Citrus Sinensis ID: 022585

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-----
Protein Sequence
MLMCCGGRVLAGLYPAKKPLIPYNYHGGNSRFRRLNSNWRCRASEPESSSFAPSIDAESADKNAAGFCIIEGPETVQDFAKMELQEIHDNIRSRRNKIFLHMEEVRRLRIQQRIKNAELGISKEEQDNELPSFPSFIPFLPPLSAANLKVYYATCFSLIAGVILFGGLLAPSLELKLGIGGTSYADFIQSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGYLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKVGWTPNEIF
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHcccccHHHHHHHHHccccccccccccEEEcccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccEEEccccccc
Secondary Structure Prediction (SSPRO)
ccEHEccHEEEEEcccccccccccccccccHHHHccHcHHHcccccccccccccccccccccccccEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHEEEcccccccHHHHHHHccccHHHcccccHEEEcccHHHHHHHHHHHHHHHHHHHHHHHHcHHccccccEEEEEEcccccEEEEcccccccccccccccccccEccccccccccccccHHcc
Coil and Loop (DISEMBL)
mlmccggrvlaglypakkplipynyhggnsrfrrlnsnwrcrasepesssfapsidaesadknaagfciiegpetvQDFAKMELQEIHDNIRSRRNKIFLHMEEVRRLRIQQRIKNAElgiskeeqdnelpsfpsfipflpplsaaNLKVYYATCFSLIAGVILFGgllapslelklgiggtsyADFIQsvhlpmqlsqvdpivasfsgGAVGVISALMIVEVNNVKQQEQKRCKyclgtgylacarcsntgslvliepvstvnggdqplsapktercsncsgsgkvgwtpneif
Flexible Loop (DISEMBL)
MLMCCGGRVLAGLYPAKKPLIPYNYHGGNSRFRRLNSNWRCRASepesssfapsiDAESADKNAAGFCIIEGPETVQDFAKMELQEIHDNIRSRRNKIFLHMEEVRRLRIQQRIKNAELGISKEEQDNELPSFPSFIPFLPPLSAANLKVYYATCFSLIAGVILFGGLLAPSLELKLGIGGTSYADFIQSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGYLACARCSNTGSLVLIEPVStvnggdqplsapktercsncsgsgkvgwtpneif
Low Complexity Region (SEG)
MLMCCGGRVLAGLYPAKKPLIPYNYHGGNSRFRRLNSNWRCRasepesssfapsIDAESADKNAAGFCIIEGPETVQDFAKMELQEIHDNIRSRRNKIFLHMEEVRRLRIQQRIKNAELGISKEEQDNElpsfpsfipflpplsAANLKVYYATCFSLIAGVILFGGLLAPSLELKLGIGGTSYADFIQSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGYLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKVGWTPNEIF
Disordered region (IsUnstruct)
**MCCGGRVLAGLYPAKKPLIPYNYHGGNSRFRRLNSNWRC**********************AAGFCIIEGPETVQDFAKMELQEIHDNIRSRRNKIFLHMEEVRRLRIQQRIK*****************FPSFIPFLPPLSAANLKVYYATCFSLIAGVILFGGLLAPSLELKLGIGGTSYADFIQSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGYLACARCSNTGSLVLIEPVST*********************************
Disordered Region (DISOPRED)
****C*GRVLAGLYPAKKPLIPY*****************************************AGFCIIEGPETVQDFAKMELQEIHDNIRSRRNKIFLHMEEVRRLRIQ************************FIPFLPPLSAANLKVYYATCFSLIAGVILFGGLLAPSLELKLGIGGTSYADFIQSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEV*****Q*QKRCKYCLGTGYLACARCSNTGSLVLIEP********QPLSAPKTERCSNCSGSGKVGWTPN*I*
Disordered Region (DISEMBL)
MLMCCGGRVLAGLYPAKKPLIPYNYHGGNSRFRRLNSNWRC*************IDAESADKNAAGFCIIEGPETVQDFAKMELQEIHDNIRSRRNKIFLHMEEVRRLRIQQRIKNAELGISKEEQDNELPSFPSFIPFLPPLSAANLKVYYATCFSLIAGVILFGGLLAPSLELKLGIGGTSYADFIQSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGYLACARCSNTGSLVLIEPVSTVNGGDQPLS************SGKVGWTPNEIF
Disordered Region (DISPRO)
MLMCCGGRVLAGLYPAKKPLIPYNYHGGNSRFRRLN*NW*CR*********************AAGFCIIEGPETVQDFAKMELQEIHDNIRSRRNKIFLHMEEVRRLRIQQRIKNAE************PSFPSFIPFLPPLSAANLKVYYATCFSLIAGVILFGGLLAPSLELKLGIGGTSYADFIQSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGYLACARCSNTGSLVLIEPVSTVNG*DQPLSAPKTERCSNCSGSGKVGWTPN**F
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLMCCGGRVLAGLYPAKKPLIPYNYHGGNSRFRRLNSNWRCRASEPESSSFAPSIDAESADKNAAGFCIIEGPETVQDFAKMELQEIHDNIRSRRNKIFLHMEEVRRLRIQQRIKNAELGISKEEQDNELPSFPSFIPFLPPLSAANLKVYYATCFSLIAGVILFGGLLAPSLELKLGIGGTSYADFIQSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGYLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKVGWTPNEIF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	295
224114611	316	predicted protein [Populus trichocarpa]	0.962	0.898	0.767	1e-125
359490129	307	PREDICTED: uncharacterized protein LOC10	0.945	0.908	0.788	1e-125
225454961	312	PREDICTED: uncharacterized protein LOC10	0.962	0.910	0.806	1e-122
449451844	326	PREDICTED: uncharacterized protein LOC10	0.949	0.858	0.75	1e-122
255539933	313	conserved hypothetical protein [Ricinus	0.942	0.888	0.781	1e-121
345841545	311	orange protein [Nicotiana tabacum]	0.962	0.913	0.753	1e-120
297793723	307	hypothetical protein ARALYDRAFT_496333 [	0.938	0.902	0.784	1e-120
356544872	301	PREDICTED: uncharacterized protein LOC10	0.928	0.910	0.781	1e-120
359302816	317	orange protein [Nicotiana tabacum]	0.962	0.895	0.738	1e-118
363807516	293	uncharacterized protein LOC100780032 [Gl	0.874	0.880	0.806	1e-118

>gi|224114611|ref|XP_002332323.1| predicted protein [Populus trichocarpa] gi|222832570|gb|EEE71047.1| predicted protein [Populus trichocarpa]

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 225/293 (76%), Positives = 251/293 (85%), Gaps = 9/293 (3%)

Query: 3   MCCGGRVLAGLYPAKKPLIPYNY---HGGNSRF-----RRLNSNWRCRASEPESSSFAPS 54
           M C  RVL    P K PL  ++        SRF      +LN  W+  ASE +SSSFA S
Sbjct: 1   MACLSRVLTVSCPVK-PLYGFSACSSQNWRSRFADASNHKLNLRWKAMASESDSSSFAAS 59

Query: 55  IDAESADKNAAGFCIIEGPETVQDFAKMELQEIHDNIRSRRNKIFLHMEEVRRLRIQQRI 114
           +D++S D+NA GFCIIEGPETVQDFAKMEL EI DNIRSRRNKIFLHMEEVRRLRIQQRI
Sbjct: 60  VDSDSPDRNATGFCIIEGPETVQDFAKMELLEIQDNIRSRRNKIFLHMEEVRRLRIQQRI 119

Query: 115 KNAELGISKEEQDNELPSFPSFIPFLPPLSAANLKVYYATCFSLIAGVILFGGLLAPSLE 174
           KNAELGIS E ++NELP+FPSFIPFLPPLSA NL++YYATCFSLIAG+I+FGGLLAP+LE
Sbjct: 120 KNAELGISNESEENELPNFPSFIPFLPPLSAENLRLYYATCFSLIAGIIIFGGLLAPALE 179

Query: 175 LKLGIGGTSYADFIQSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRC 234
           LKLG+GGTSY DFI+++HLPMQLSQVDPIVASFSGGAVGVISALM+VE+NNVKQQE KRC
Sbjct: 180 LKLGLGGTSYPDFIRTMHLPMQLSQVDPIVASFSGGAVGVISALMVVEINNVKQQEHKRC 239

Query: 235 KYCLGTGYLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV 287
           KYCLGTGYLACARCSNTG+LVLIEPVST++G DQPLS PKTERCSNCSGSGKV
Sbjct: 240 KYCLGTGYLACARCSNTGALVLIEPVSTISGADQPLSRPKTERCSNCSGSGKV 292

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359490129|ref|XP_002280857.2| PREDICTED: uncharacterized protein LOC100261377 [Vitis vinifera] gi|297744972|emb|CBI38564.3| unnamed protein product [Vitis vinifera]

 Score =  452 bits (1163), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 228/289 (78%), Positives = 252/289 (87%), Gaps = 10/289 (3%)

Query: 3   MCCGGRVLAGLYPAKKPLIPYNYHGGNSRFR--RLNSN--WRCRASEPESSSFAPSIDAE 58
           M   GR+LA  Y    P   Y Y   NSRF   +L S+  WR   S PE+S+FAPS+D+E
Sbjct: 1   MVYTGRILAVSY---SPTTSYRY--SNSRFHQGKLKSDLKWRAMVSGPEASAFAPSVDSE 55

Query: 59  SADKNAAGFCIIEGPETVQDFAKMELQEIHDNIRSRRNKIFLHMEEVRRLRIQQRIKNAE 118
           SADKN  GFCIIEGPETVQDFAKMELQEI DNIRSRRNKIFLHMEEVRRLRIQQRIKNAE
Sbjct: 56  SADKNDTGFCIIEGPETVQDFAKMELQEIQDNIRSRRNKIFLHMEEVRRLRIQQRIKNAE 115

Query: 119 LGISKEEQDNELPSFPSFIPFLPPLSAANLKVYYATCFSLIAGVILFGGLLAPSLELKLG 178
           LGI KE Q+NEL +FPSFIPFLPPLS+ANLK+YYA CFSL+AG+I+FGGLLAP+LELKLG
Sbjct: 116 LGILKE-QENELQNFPSFIPFLPPLSSANLKLYYAACFSLLAGIIIFGGLLAPTLELKLG 174

Query: 179 IGGTSYADFIQSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCL 238
           +GGTSY DFI+SVHLPMQLSQVDPIVASFSGGAVGVIS+LMIVE+NNVKQQE+KRCKYCL
Sbjct: 175 LGGTSYEDFIRSVHLPMQLSQVDPIVASFSGGAVGVISSLMIVEINNVKQQEKKRCKYCL 234

Query: 239 GTGYLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV 287
           GTGYLACARCS++G+LVL EPVSTVNGG QPLS PKTERCSNCSG+GKV
Sbjct: 235 GTGYLACARCSSSGALVLSEPVSTVNGGRQPLSPPKTERCSNCSGAGKV 283

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225454961|ref|XP_002280630.1| PREDICTED: uncharacterized protein LOC100266582 [Vitis vinifera]

 Score =  443 bits (1139), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 233/289 (80%), Positives = 256/289 (88%), Gaps = 5/289 (1%)

Query: 3   MCCGGRVLAGLYPAKKPLIPYNYHGGNSRFRR--LNSN--WRCRASEPESSSFAPSIDAE 58
           M C GR+LA  Y         NY   NSRF +  L SN  WR  ASEPE+SSFA S+D++
Sbjct: 1   MVCTGRILAVSYSPTTSF-HRNYRYSNSRFLQGNLKSNLKWRSMASEPEASSFASSVDSD 59

Query: 59  SADKNAAGFCIIEGPETVQDFAKMELQEIHDNIRSRRNKIFLHMEEVRRLRIQQRIKNAE 118
           S+DKN+ GFCIIEGPETVQDFAKMELQEI DNIRSRRNKIFLHMEEVRRLRIQQRIK+AE
Sbjct: 60  SSDKNSTGFCIIEGPETVQDFAKMELQEIQDNIRSRRNKIFLHMEEVRRLRIQQRIKSAE 119

Query: 119 LGISKEEQDNELPSFPSFIPFLPPLSAANLKVYYATCFSLIAGVILFGGLLAPSLELKLG 178
           LGI KEEQ+NELP+FPSFIPFLPPLS+ANLK+YYATCFSLIAG+I+FGGLLAP+LELKLG
Sbjct: 120 LGILKEEQENELPNFPSFIPFLPPLSSANLKLYYATCFSLIAGIIIFGGLLAPTLELKLG 179

Query: 179 IGGTSYADFIQSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCL 238
           +GGTSY DFI+SVHLPMQLSQVDPIVASFSGGAVGVISALM+VE+NNVKQQE KRCKYCL
Sbjct: 180 LGGTSYEDFIRSVHLPMQLSQVDPIVASFSGGAVGVISALMVVEINNVKQQENKRCKYCL 239

Query: 239 GTGYLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV 287
           GTGYLACARCS+TG+LVLIEPVSTVN G QPLS PKTERCSNCSG+GKV
Sbjct: 240 GTGYLACARCSSTGALVLIEPVSTVNSGSQPLSPPKTERCSNCSGAGKV 288

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451844|ref|XP_004143670.1| PREDICTED: uncharacterized protein LOC101219412 [Cucumis sativus] gi|449488619|ref|XP_004158115.1| PREDICTED: uncharacterized protein LOC101232024 [Cucumis sativus]

 Score =  442 bits (1138), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 225/300 (75%), Positives = 253/300 (84%), Gaps = 20/300 (6%)

Query: 8   RVLAGLYPAKKPLIPYNYHGGN-------SRF------RRLNSNWRCRA-------SEPE 47
           RVL   YP    + P+++           SRF      ++L+S WR R+       S   
Sbjct: 3   RVLVASYPINHLIRPHSFRIDYCWSTCFISRFNSGKERQKLSSRWRWRSMASDSTDSSSS 62

Query: 48  SSSFAPSIDAESADKNAAGFCIIEGPETVQDFAKMELQEIHDNIRSRRNKIFLHMEEVRR 107
           SSSFAPS++++ +DK +A FCIIEGPETVQDFAKMELQEI +NIRSRRNKIFLHMEEVRR
Sbjct: 63  SSSFAPSVESDPSDKTSASFCIIEGPETVQDFAKMELQEIQENIRSRRNKIFLHMEEVRR 122

Query: 108 LRIQQRIKNAELGISKEEQDNELPSFPSFIPFLPPLSAANLKVYYATCFSLIAGVILFGG 167
           LRIQQRIKNAELGISKEE++NELP+FPSFIPFLPPLS+ANLK+YY TC+SLIAG+ILFGG
Sbjct: 123 LRIQQRIKNAELGISKEERENELPNFPSFIPFLPPLSSANLKLYYVTCYSLIAGIILFGG 182

Query: 168 LLAPSLELKLGIGGTSYADFIQSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVK 227
           LLAP+LELKLG+GGTSY DFI+SVHLPMQLSQVDPIVASFSGGAVGVISALM+VEVNNVK
Sbjct: 183 LLAPTLELKLGLGGTSYEDFIRSVHLPMQLSQVDPIVASFSGGAVGVISALMVVEVNNVK 242

Query: 228 QQEQKRCKYCLGTGYLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV 287
           QQE KRCKYCLGTGYLACARCSNTG+LVLIEPVST+NG DQPLS PKTERC NCSGSGKV
Sbjct: 243 QQEHKRCKYCLGTGYLACARCSNTGALVLIEPVSTLNGEDQPLSLPKTERCQNCSGSGKV 302

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539933|ref|XP_002511031.1| conserved hypothetical protein [Ricinus communis] gi|223550146|gb|EEF51633.1| conserved hypothetical protein [Ricinus communis]

 Score =  439 bits (1130), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 225/288 (78%), Positives = 251/288 (87%), Gaps = 10/288 (3%)

Query: 7   GRVLAGLYPAKKPL---IPYNYHGGNSRF----RRLNSNWRCRASEPESSSFAPSIDAES 59
           GR LA  YP K PL   + +N H    RF    R+L S WR  ASE ++SS +    +  
Sbjct: 5   GRALAVSYPVK-PLCLHVLHNPHHSTGRFIDVNRKLISKWRSMASELDASSPS--SSSFD 61

Query: 60  ADKNAAGFCIIEGPETVQDFAKMELQEIHDNIRSRRNKIFLHMEEVRRLRIQQRIKNAEL 119
           +DKNAAGFCIIEGPETVQDFAKMELQEI DNIRSRRNKIFLHMEEVRRLRIQQRIKNAEL
Sbjct: 62  SDKNAAGFCIIEGPETVQDFAKMELQEIQDNIRSRRNKIFLHMEEVRRLRIQQRIKNAEL 121

Query: 120 GISKEEQDNELPSFPSFIPFLPPLSAANLKVYYATCFSLIAGVILFGGLLAPSLELKLGI 179
           GI +EEQ+NELP+FPSFIPFLPPLSAANL++YYATCFSLIAG+I+FGGLLAP+LELKLG+
Sbjct: 122 GILQEEQENELPNFPSFIPFLPPLSAANLRLYYATCFSLIAGIIIFGGLLAPALELKLGL 181

Query: 180 GGTSYADFIQSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLG 239
           GGTSY DFI++VHLPMQLSQVDPIVASFSGGAVGVISALM+VE+NNVKQQE KRCKYCLG
Sbjct: 182 GGTSYEDFIRNVHLPMQLSQVDPIVASFSGGAVGVISALMVVEINNVKQQEHKRCKYCLG 241

Query: 240 TGYLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV 287
           TGYLACARCS+TG+LVL+EPVSTV+ GDQPL  PKTERCSNCSG+GKV
Sbjct: 242 TGYLACARCSSTGALVLVEPVSTVSSGDQPLPVPKTERCSNCSGAGKV 289

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|345841545|gb|AEO17754.1| orange protein [Nicotiana tabacum]

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 217/288 (75%), Positives = 244/288 (84%), Gaps = 4/288 (1%)

Query: 3   MCCGGRVLAGLYPAKKPLIPYN---YHGGNSRFRRLNSNWRCRASEPESSSFAPSIDAES 59
           M C GR+L  L  +  P         H  N R    N  WR  AS+ ++S+F  S D+ES
Sbjct: 1   MVCSGRILC-LSCSTTPFCSSTSRYLHRRNLRNNTNNIKWRSMASDADASAFTTSFDSES 59

Query: 60  ADKNAAGFCIIEGPETVQDFAKMELQEIHDNIRSRRNKIFLHMEEVRRLRIQQRIKNAEL 119
           +DK A GFCIIEGPETV+DFAKMELQEI DNIRSRRNKIFLHMEEVRRLRIQQR+K+AEL
Sbjct: 60  SDKTAPGFCIIEGPETVEDFAKMELQEIRDNIRSRRNKIFLHMEEVRRLRIQQRLKSAEL 119

Query: 120 GISKEEQDNELPSFPSFIPFLPPLSAANLKVYYATCFSLIAGVILFGGLLAPSLELKLGI 179
           GI  +EQ+NELP+FPSFIPFLPPL++ANLK YYATCFSLIAG++LFGGLLAP+LELKLG+
Sbjct: 120 GILTDEQENELPNFPSFIPFLPPLTSANLKQYYATCFSLIAGIMLFGGLLAPTLELKLGL 179

Query: 180 GGTSYADFIQSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLG 239
           GGTSYADFIQS+HLPMQLSQVDPIVASFSGGAVGVISALM+VE+NNVKQQE KRCKYCLG
Sbjct: 180 GGTSYADFIQSMHLPMQLSQVDPIVASFSGGAVGVISALMVVEINNVKQQEHKRCKYCLG 239

Query: 240 TGYLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV 287
           TGYLACARCS+TG+LVLIEPVST NG D+PLS P TERC NCSG+GKV
Sbjct: 240 TGYLACARCSSTGALVLIEPVSTFNGADKPLSPPNTERCPNCSGAGKV 287

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297793723|ref|XP_002864746.1| hypothetical protein ARALYDRAFT_496333 [Arabidopsis lyrata subsp. lyrata] gi|297310581|gb|EFH41005.1| hypothetical protein ARALYDRAFT_496333 [Arabidopsis lyrata subsp. lyrata]

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 222/283 (78%), Positives = 243/283 (85%), Gaps = 6/283 (2%)

Query: 7   GRVLAGLYPAKKPLIPYNYHGGNSRFRRLNS-NWRCRASEPESSSFAPSIDAES-ADKNA 64
           GR+L+  YP       ++ +  +S  RR  S  WR  A +PESS     +D+ES ADK A
Sbjct: 5   GRILSVSYPPDPYTPRFSQYKLSSSLRRTRSLRWRFTALDPESSP----LDSESSADKFA 60

Query: 65  AGFCIIEGPETVQDFAKMELQEIHDNIRSRRNKIFLHMEEVRRLRIQQRIKNAELGISKE 124
           AGFCIIEGPETVQDFAKM+LQEI DNIRSRRNKIFLHMEEVRRLRIQQRIKN ELGI  E
Sbjct: 61  AGFCIIEGPETVQDFAKMQLQEIQDNIRSRRNKIFLHMEEVRRLRIQQRIKNTELGIINE 120

Query: 125 EQDNELPSFPSFIPFLPPLSAANLKVYYATCFSLIAGVILFGGLLAPSLELKLGIGGTSY 184
           EQ++ELP+FPSFIPFLPPLSAANLKVYYATCFSLIAG+ILFGGLLAP+LELKLGIGGTSY
Sbjct: 121 EQEHELPNFPSFIPFLPPLSAANLKVYYATCFSLIAGIILFGGLLAPTLELKLGIGGTSY 180

Query: 185 ADFIQSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGYLA 244
           ADFIQS+HLPMQLSQVDPIVASFSGGAVGVISALM+VEVNNVKQQE KRCKYCLGTGYLA
Sbjct: 181 ADFIQSLHLPMQLSQVDPIVASFSGGAVGVISALMVVEVNNVKQQEHKRCKYCLGTGYLA 240

Query: 245 CARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV 287
           CARCS+TG+LVL EPVS V G +  LS PKTERCSNCSG+GKV
Sbjct: 241 CARCSSTGALVLTEPVSAVAGVNHSLSPPKTERCSNCSGAGKV 283

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544872|ref|XP_003540871.1| PREDICTED: uncharacterized protein LOC100780118 [Glycine max]

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 225/288 (78%), Positives = 245/288 (85%), Gaps = 14/288 (4%)

Query: 3   MCCGGRVLAGL--YPAKKPLIPYNYHGGNSRFRRLNSNWRCRASEPESSSFAPSIDAESA 60
           M C GR   G+  YP K      +Y     R       W   A++   SSFAPS+D+   
Sbjct: 1   MLCLGR-FGGVSHYPIKSGWSRRDYTNNRPR-------WCLMAAQESDSSFAPSLDS--- 49

Query: 61  DKNA-AGFCIIEGPETVQDFAKMELQEIHDNIRSRRNKIFLHMEEVRRLRIQQRIKNAEL 119
           DK A AGFCIIEGPETVQDFAKMELQEI DNIRSRRNKIFLHMEEVRRLRIQQRIK+AEL
Sbjct: 50  DKTASAGFCIIEGPETVQDFAKMELQEIQDNIRSRRNKIFLHMEEVRRLRIQQRIKSAEL 109

Query: 120 GISKEEQDNELPSFPSFIPFLPPLSAANLKVYYATCFSLIAGVILFGGLLAPSLELKLGI 179
           GI  EEQ+NELP+FPSFIPFLPPL++ANLK YYATCFSLIAG+ILFGGLLAPSLELKLG+
Sbjct: 110 GILNEEQENELPNFPSFIPFLPPLTSANLKQYYATCFSLIAGIILFGGLLAPSLELKLGL 169

Query: 180 GGTSYADFIQSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLG 239
           GGTSYADFI+S+HLPMQLSQVDPIVASFSGGAVGVISALM+VE+NNVKQQEQKRCKYCLG
Sbjct: 170 GGTSYADFIESLHLPMQLSQVDPIVASFSGGAVGVISALMVVEINNVKQQEQKRCKYCLG 229

Query: 240 TGYLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV 287
           TGYLACARCS+TG+LVLIEPVSTV GGD+PLS PKTERCSNCSGSGKV
Sbjct: 230 TGYLACARCSSTGALVLIEPVSTVKGGDKPLSPPKTERCSNCSGSGKV 277

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359302816|gb|AEV23056.1| orange protein [Nicotiana tabacum]

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 217/294 (73%), Positives = 244/294 (82%), Gaps = 10/294 (3%)

Query: 3   MCCGGRVLAGLYPAKKPLIPYN---YHGGNSRFRRLNSNWRCRASEPESSSFAPSIDAES 59
           M C GR+L  L  +  P         H  N R    N  WR  AS+ ++S+F  S D+ES
Sbjct: 1   MVCSGRILC-LSCSTTPFCSSTSRYLHRRNLRNNTNNIKWRSMASDADASAFTTSFDSES 59

Query: 60  ADKNAAGFCIIEGPETVQDFAKMELQEIHDNIRSRRNKIFLHMEE------VRRLRIQQR 113
           +DK A GFCIIEGPETV+DFAKMELQEI DNIRSRRNKIFLHMEE      VRRLRIQQR
Sbjct: 60  SDKTAPGFCIIEGPETVEDFAKMELQEIRDNIRSRRNKIFLHMEEACFSPYVRRLRIQQR 119

Query: 114 IKNAELGISKEEQDNELPSFPSFIPFLPPLSAANLKVYYATCFSLIAGVILFGGLLAPSL 173
           +K+AELGI  +EQ+NELP+FPSFIPFLPPL++ANLK YYATCFSLIAG++LFGGLLAP+L
Sbjct: 120 LKSAELGILTDEQENELPNFPSFIPFLPPLTSANLKQYYATCFSLIAGIMLFGGLLAPTL 179

Query: 174 ELKLGIGGTSYADFIQSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKR 233
           ELKLG+GGTSYADFIQS+HLPMQLSQVDPIVASFSGGAVGVISALM+VE+NNVKQQE KR
Sbjct: 180 ELKLGLGGTSYADFIQSMHLPMQLSQVDPIVASFSGGAVGVISALMVVEINNVKQQEHKR 239

Query: 234 CKYCLGTGYLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV 287
           CKYCLGTGYLACARCS+TG+LVLIEPVST NG D+PLS P TERC NCSG+GKV
Sbjct: 240 CKYCLGTGYLACARCSSTGALVLIEPVSTFNGADKPLSPPNTERCPNCSGAGKV 293

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807516|ref|NP_001241887.1| uncharacterized protein LOC100780032 [Glycine max] gi|255639096|gb|ACU19848.1| unknown [Glycine max]

 Score =  430 bits (1105), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 217/269 (80%), Positives = 235/269 (87%), Gaps = 11/269 (4%)

Query: 21  IPYNYHGGNSRFRRLNS-NWRCRASEPESSSFAPSIDAESADKNA-AGFCIIEGPETVQD 78
           + Y +     R   +N   WR  A E      +PS+D+   DK A AGFCIIEGPETVQD
Sbjct: 10  VSYGWSWNRRRDNTINRPRWRLMAQE------SPSLDS---DKTATAGFCIIEGPETVQD 60

Query: 79  FAKMELQEIHDNIRSRRNKIFLHMEEVRRLRIQQRIKNAELGISKEEQDNELPSFPSFIP 138
           FAKMELQEI DNIRSRRNKIFLHMEEVRRLRIQQRIKNAELGI  EEQ+NELP+FPSFIP
Sbjct: 61  FAKMELQEIQDNIRSRRNKIFLHMEEVRRLRIQQRIKNAELGILSEEQENELPNFPSFIP 120

Query: 139 FLPPLSAANLKVYYATCFSLIAGVILFGGLLAPSLELKLGIGGTSYADFIQSVHLPMQLS 198
           FLPPL++ANLK YYATCFSLIAG+ILFGGLLAPSLELKLG+GGTSYADFI+SVHLPMQLS
Sbjct: 121 FLPPLTSANLKQYYATCFSLIAGIILFGGLLAPSLELKLGLGGTSYADFIESVHLPMQLS 180

Query: 199 QVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGYLACARCSNTGSLVLIE 258
           QVDPIVASFSGGAVGVISALM+VE+NNVKQQ QKRCKYCLGTGYLACARCS+TG+LVLIE
Sbjct: 181 QVDPIVASFSGGAVGVISALMVVEINNVKQQGQKRCKYCLGTGYLACARCSSTGALVLIE 240

Query: 259 PVSTVNGGDQPLSAPKTERCSNCSGSGKV 287
           PVSTV GGD+PLS PKTERCSNCSGSGKV
Sbjct: 241 PVSTVKGGDKPLSPPKTERCSNCSGSGKV 269

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	295
TAIR|locus:2151556	307	AT5G61670 "AT5G61670" [Arabido	0.938	0.902	0.713	3.1e-99
TAIR|locus:2152845	315	AT5G06130 [Arabidopsis thalian	0.776	0.726	0.608	8.9e-70

TAIR|locus:2151556 AT5G61670 "AT5G61670" [Arabidopsis thaliana (taxid:3702)]

 Score = 985 (351.8 bits), Expect = 3.1e-99, P = 3.1e-99
 Identities = 202/283 (71%), Positives = 221/283 (78%)

Query:     7 GRVLAGLYPAKKPLIPYNYHGGNSRFRR-LNSNWRCRXXXXXXXXXXXXIDAES-ADKNA 64
             GR+L+  YP      PY +     +    L  N R R            +D+ES ADK A
Sbjct:     5 GRILSVSYPPD----PYTWRFSQYKLSSSLGRNRRLRWRFTALDPESSSLDSESSADKFA 60

Query:    65 AGFCIIEGPETVQDFAKMELQEIHDNIRSRRNKIFLHMEEVRRLRIQQRIKNAELGISKE 124
             +GFCIIEGPETVQDFAKM+LQEI DNIRSRRNKIFLHMEEVRRLRIQQRIKN ELGI  E
Sbjct:    61 SGFCIIEGPETVQDFAKMQLQEIQDNIRSRRNKIFLHMEEVRRLRIQQRIKNTELGIINE 120

Query:   125 EQDNEXXXXXXXXXXXXXXXAANLKVYYATCFSLIAGVILFGGLLAPSLELKLGIGGTSY 184
             EQ++E               AANLKVYYATCFSLIAG+ILFGGLLAP+LELKLGIGGTSY
Sbjct:   121 EQEHELPNFPSFIPFLPPLTAANLKVYYATCFSLIAGIILFGGLLAPTLELKLGIGGTSY 180

Query:   185 ADFIQSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGYLA 244
             ADFIQS+HLPMQLSQVDPIVASFSGGAVGVISALM+VEVNNVKQQE KRCKYCLGTGYLA
Sbjct:   181 ADFIQSLHLPMQLSQVDPIVASFSGGAVGVISALMVVEVNNVKQQEHKRCKYCLGTGYLA 240

Query:   245 CARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV 287
             CARCS+TG+LVL EPVS + GG+  LS PKTERCSNCSG+GKV
Sbjct:   241 CARCSSTGALVLTEPVSAIAGGNHSLSPPKTERCSNCSGAGKV 283

GO:0009536 "plastid" evidence=ISS

GO:0009661 "chromoplast organization" evidence=ISS

GO:0016120 "carotene biosynthetic process" evidence=ISS

TAIR|locus:2152845 AT5G06130 [Arabidopsis thaliana (taxid:3702)]

 Score = 707 (253.9 bits), Expect = 8.9e-70, P = 8.9e-70
 Identities = 140/230 (60%), Positives = 170/230 (73%)

Query:    59 SADKNAAGFCIIEGPETVQDFAKMELQEIHDNIRSRRNKIFLHMEEVRRLRIQQRIKNAE 118
             S D     FCIIEG ETVQDF +M+LQEI DNIRSRRNKIFL MEEVRRLR+QQRIK+ +
Sbjct:    62 SGDTVPNNFCIIEGSETVQDFVQMQLQEIQDNIRSRRNKIFLLMEEVRRLRVQQRIKSVK 121

Query:   119 -LGISKEEQDNEXXXXXXXXXXXXXXXAANLKVYYATCFSLIAGVILFGGLLAPSLELKL 177
              +    E +  E                  LK  Y+T  +LI+G+I FGGL+AP+LELK+
Sbjct:   122 AINEDSELEATEMPEITSSIPFLPNVTPKTLKQLYSTSVALISGIIFFGGLIAPNLELKV 181

Query:   178 GIGGTSYADFIQSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYC 237
             G+GGTSY DFI+S+HLP+QLSQVDPIVASFSGGAVGVIS LM++EVNNVKQQE+KRCKYC
Sbjct:   182 GLGGTSYEDFIRSLHLPLQLSQVDPIVASFSGGAVGVISTLMLIEVNNVKQQEKKRCKYC 241

Query:   238 LGTGYLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV 287
             LGTGYL CARCS +G  + I+P++     +Q +    T+RC NCSG+GKV
Sbjct:   242 LGTGYLPCARCSASGVCLSIDPITRPRATNQLMQVATTKRCLNCSGAGKV 291


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.137   0.412    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      295       268   0.00096  114 3  11 22  0.47    33
                                                     32  0.39    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  606 (64 KB)
  Total size of DFA:  196 KB (2111 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.35u 0.34s 20.69t   Elapsed:  00:00:02
  Total cpu time:  20.35u 0.34s 20.69t   Elapsed:  00:00:02
  Start:  Fri May 10 06:53:38 2013   End:  Fri May 10 06:53:40 2013

GO:0005739 "mitochondrion" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_2320012 hypothetical protein (317 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	295
PRK14298	377	PRK14298, PRK14298, chaperone protein DnaJ; Provis	0.004

>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional

 Score = 37.9 bits (88), Expect = 0.004
 Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 4/58 (6%)

Query: 230 EQKRCKYCLGTGYLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV 287
             KRC  C GTG +   R +  G  V     ST +G  Q + +P    C  CSG+GKV
Sbjct: 157 SPKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVIESP----CPVCSGTGKV 210

Length = 377

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	295
PLN03165	111	chaperone protein dnaJ-related; Provisional	99.28
PF00684	66	DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR0	98.1
KOG2813	406	consensus Predicted molecular chaperone, contains	98.04
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	97.69
PRK14301	373	chaperone protein DnaJ; Provisional	97.59
PRK14282	369	chaperone protein DnaJ; Provisional	97.59
PRK14296	372	chaperone protein DnaJ; Provisional	97.57
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	97.57
PRK10767	371	chaperone protein DnaJ; Provisional	97.55
PRK14285	365	chaperone protein DnaJ; Provisional	97.53
PRK14286	372	chaperone protein DnaJ; Provisional	97.53
PRK14284	391	chaperone protein DnaJ; Provisional	97.5
PTZ00037	421	DnaJ_C chaperone protein; Provisional	97.49
PRK14279	392	chaperone protein DnaJ; Provisional	97.47
PRK14276	380	chaperone protein DnaJ; Provisional	97.46
PRK14278	378	chaperone protein DnaJ; Provisional	97.46
PRK14287	371	chaperone protein DnaJ; Provisional	97.45
PRK14297	380	chaperone protein DnaJ; Provisional	97.44
PRK14280	376	chaperone protein DnaJ; Provisional	97.44
PRK14294	366	chaperone protein DnaJ; Provisional	97.42
PRK14295	389	chaperone protein DnaJ; Provisional	97.42
PRK14298	377	chaperone protein DnaJ; Provisional	97.4
PRK14300	372	chaperone protein DnaJ; Provisional	97.39
PRK14293	374	chaperone protein DnaJ; Provisional	97.38
PRK14291	382	chaperone protein DnaJ; Provisional	97.33
PRK14283	378	chaperone protein DnaJ; Provisional	97.31
PRK14288	369	chaperone protein DnaJ; Provisional	97.29
PRK14281	397	chaperone protein DnaJ; Provisional	97.26
PRK14277	386	chaperone protein DnaJ; Provisional	97.24
PRK14289	386	chaperone protein DnaJ; Provisional	97.23
PF00684	66	DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR0	97.05
PRK14292	371	chaperone protein DnaJ; Provisional	97.03
KOG2813	406	consensus Predicted molecular chaperone, contains	97.0
PRK14290	365	chaperone protein DnaJ; Provisional	96.97
COG1107	715	Archaea-specific RecJ-like exonuclease, contains D	96.79
PRK14300	372	chaperone protein DnaJ; Provisional	96.72
PRK14284	391	chaperone protein DnaJ; Provisional	96.69
PRK14296	372	chaperone protein DnaJ; Provisional	96.64
PRK10767	371	chaperone protein DnaJ; Provisional	96.6
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	96.59
PRK14278	378	chaperone protein DnaJ; Provisional	96.58
KOG2824	281	consensus Glutaredoxin-related protein [Posttransl	96.54
PRK14288	369	chaperone protein DnaJ; Provisional	96.51
PRK14285	365	chaperone protein DnaJ; Provisional	96.5
PRK14286	372	chaperone protein DnaJ; Provisional	96.48
COG1107	715	Archaea-specific RecJ-like exonuclease, contains D	96.44
PRK14280	376	chaperone protein DnaJ; Provisional	96.42
PRK14301	373	chaperone protein DnaJ; Provisional	96.42
PRK14282	369	chaperone protein DnaJ; Provisional	96.42
PRK14279	392	chaperone protein DnaJ; Provisional	96.39
cd03031	147	GRX_GRX_like Glutaredoxin (GRX) family, GRX-like d	96.35
PRK14297	380	chaperone protein DnaJ; Provisional	96.28
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	96.15
PRK14277	386	chaperone protein DnaJ; Provisional	96.14
PTZ00037	421	DnaJ_C chaperone protein; Provisional	96.14
PRK14295	389	chaperone protein DnaJ; Provisional	96.13
PRK14294	366	chaperone protein DnaJ; Provisional	96.11
PRK14293	374	chaperone protein DnaJ; Provisional	96.08
PRK14281	397	chaperone protein DnaJ; Provisional	96.06
PRK14291	382	chaperone protein DnaJ; Provisional	96.04
PRK14283	378	chaperone protein DnaJ; Provisional	95.9
PRK14292	371	chaperone protein DnaJ; Provisional	95.87
PRK14287	371	chaperone protein DnaJ; Provisional	95.8
TIGR02642	186	phage_xxxx uncharacterized phage protein. This unc	95.24
PLN03165	111	chaperone protein dnaJ-related; Provisional	95.13
PRK14276	380	chaperone protein DnaJ; Provisional	94.79
TIGR02642	186	phage_xxxx uncharacterized phage protein. This unc	94.59
KOG0712	337	consensus Molecular chaperone (DnaJ superfamily) [	94.56
PRK14298	377	chaperone protein DnaJ; Provisional	94.14
PRK14289	386	chaperone protein DnaJ; Provisional	92.98
PRK14290	365	chaperone protein DnaJ; Provisional	89.0
KOG0712	337	consensus Molecular chaperone (DnaJ superfamily) [	86.34

>PLN03165 chaperone protein dnaJ-related; Provisional

Probab=99.28  E-value=9.1e-13  Score=109.20  Aligned_cols=80  Identities=30%  Similarity=0.608  Sum_probs=65.7

Q ss_pred             ceecccCcchhhhhHhhhHh--hhcc-ccccccccccccccceecCccccCCceeeeeccccccCCCCCCCCCCCceeCC
Q 022585          203 IVASFSGGAVGVISALMIVE--VNNV-KQQEQKRCKYCLGTGYLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCS  279 (295)
Q Consensus       203 iVAsfsGGAVGVisal~vvE--iNNv-kqQekkRC~YC~GTGyL~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCp  279 (295)
                      |.|+..|-||| |+.++++|  ++|. |+++...|..|+|+|+..|..|+|+|.+....      +.    ......+|+
T Consensus        11 ~~~~~~~~~~~-~~~~~~~~~q~~~~~~~~~~v~C~~C~GsG~~~C~~C~G~G~v~~~~------~g----~~q~~~~C~   79 (111)
T PLN03165         11 ISVGVVSIAVG-IGIPVFYETQIDNAAKRENTQPCFPCSGTGAQVCRFCVGSGNVTVEL------GG----GEKEVSKCI   79 (111)
T ss_pred             hhhhhhhhhhc-cCCcEEEEEeeehhhhhccCCCCCCCCCCCCcCCCCCcCcCeEEEEe------CC----cEEEEEECC
Confidence            55688888999 88877766  6666 99999999999999999999999999886432      10    013577999


Q ss_pred             CCCCCcccccccCc
Q 022585          280 NCSGSGKVGWTPNE  293 (295)
Q Consensus       280 nCsGaGKVmCpTC~  293 (295)
                      +|.|.|++.|+.|.
T Consensus        80 ~C~G~Gk~~C~~C~   93 (111)
T PLN03165         80 NCDGAGSLTCTTCQ   93 (111)
T ss_pred             CCCCcceeeCCCCC
Confidence            99999999999995

>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation

Probab=98.10  E-value=2.5e-06  Score=63.70  Aligned_cols=53  Identities=26%  Similarity=0.600  Sum_probs=36.8

Q ss_pred             cccccccce------ecCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCcccc----cccCc
Q 022585          234 CKYCLGTGY------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKVG----WTPNE  293 (295)
Q Consensus       234 C~YC~GTGy------L~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKVm----CpTC~  293 (295)
                      |..|+|+|.      ..|..|+|+|.+.....  ...     .......+|+.|.|+|++.    |++|.
T Consensus         1 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~--~~~-----~~~~~~~~C~~C~G~G~~i~~~~C~~C~   63 (66)
T PF00684_consen    1 CPKCNGTGAKPGKKPKTCPQCNGSGQVTRRQQ--TPG-----GVFQMQQTCPKCGGTGKIIEKDPCKTCK   63 (66)
T ss_dssp             -CCCTTTSB-STTT-EE-TTSSSSSEEEEEEE--SSS-----TTEEEEEE-TTTSSSSEE-TSSB-SSST
T ss_pred             CCcCCCcccCCCCCCcCCcCCCCeeEEEEEEe--CCC-----eEEEEEEECCCCcceeeEECCCCCCCCC
Confidence            889999998      78999999999876542  111     1124677899999999996    88885

DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.

>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]

Probab=98.04  E-value=2.2e-06  Score=83.30  Aligned_cols=105  Identities=26%  Similarity=0.410  Sum_probs=59.2

Q ss_pred             HHHHhcCccccccccCccee-cccC-------cchhh----hhHhhhHhhhcc----ccccccccccccccceecCcccc
Q 022585          186 DFIQSVHLPMQLSQVDPIVA-SFSG-------GAVGV----ISALMIVEVNNV----KQQEQKRCKYCLGTGYLACARCS  249 (295)
Q Consensus       186 dfi~s~hlp~qlsqvDpiVA-sfsG-------GAVGV----isal~vvEiNNv----kqQekkRC~YC~GTGyL~CArCs  249 (295)
                      .||.++.   -++|..|.-| +|=|       +.-|.    =+.-|+++...-    +-.-.+.|.-|+|.|...|..|+
T Consensus       129 tfveer~---~~~q~~PfT~~~~dG~~hg~~prlw~~d~~~~gp~mf~~~~~~~~vphs~~v~~ch~c~gRG~~vc~gc~  205 (406)
T KOG2813|consen  129 TFVEERP---GSSQINPFTACNSDGTIHGFHPRLWGTDKCSRGPGMFSGVAHPAVVPHSMIVTFCHACLGRGAMVCHGCS  205 (406)
T ss_pred             eeecccc---ccceecccccCCcCCcccccCccccccccccCCCCcccccccceeccchHhhhhhhcccCCCceeccCcC
Confidence            4554443   5677777666 2222       22220    045566654330    11234679999999999999999


Q ss_pred             CCcee----eeeccccccCCCCCCCC----------CCCceeCCCCCCCcccccccCc
Q 022585          250 NTGSL----VLIEPVSTVNGGDQPLS----------APKTERCSNCSGSGKVGWTPNE  293 (295)
Q Consensus       250 GSG~i----~~~e~~S~~~Gs~~pl~----------~~~t~RCpnCsGaGKVmCpTC~  293 (295)
                      |+|.-    ...-.++.|.|-..+..          -.+..+|++|+|.|+..|+||.
T Consensus       206 g~G~~~y~~~~~m~c~sc~G~~~~k~gt~~~C~~C~G~G~~~C~tC~grG~k~C~TC~  263 (406)
T KOG2813|consen  206 GSGSNSYGIGTPMHCMSCTGVPPPKIGTHDLCYMCHGRGIKECHTCKGRGKKPCTTCS  263 (406)
T ss_pred             CCCccccccCcceecccccCCCCCCCCccchhhhccCCCcccCCcccCCCCccccccc
Confidence            99942    11123333333111100          0156678888888888888884

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=97.69  E-value=2.3e-05  Score=76.63  Aligned_cols=61  Identities=20%  Similarity=0.538  Sum_probs=45.0

Q ss_pred             hcccccccccccccccc------ceecCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCcccc---cccCc
Q 022585          224 NNVKQQEQKRCKYCLGT------GYLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKVG---WTPNE  293 (295)
Q Consensus       224 NNvkqQekkRC~YC~GT------GyL~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKVm---CpTC~  293 (295)
                      .+++-.....|..|+|+      .-..|.+|+|+|.+......    |.     ....++|+.|.|+|++-   |++|.
T Consensus       135 ~~i~~~~~~~C~~C~GsGak~gt~~~tC~tC~G~G~v~~~~~~----g~-----~~~~~~C~~C~G~G~~i~~pC~~C~  204 (371)
T COG0484         135 KEIRVTRSVTCSTCHGSGAKPGTDPKTCPTCNGSGQVRTVQRT----GF-----FSFQQTCPTCNGTGKIIKDPCGKCK  204 (371)
T ss_pred             eeEecceeeECCcCCCCCCCCCCCCCcCCCCCCcCeEEEEEee----eE-----EEEEEECCCCccceeECCCCCCCCC
Confidence            44555678899999999      56799999999987654322    10     12566899999999874   88884

>PRK14301 chaperone protein DnaJ; Provisional

Probab=97.59  E-value=4e-05  Score=73.67  Aligned_cols=59  Identities=22%  Similarity=0.503  Sum_probs=43.1

Q ss_pred             hccccccccccccccccce------ecCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc---ccccCc
Q 022585          224 NNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---GWTPNE  293 (295)
Q Consensus       224 NNvkqQekkRC~YC~GTGy------L~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV---mCpTC~  293 (295)
                      .+++-.....|..|+|+|.      ..|..|+|+|.+....      |-     .....+|+.|.|+|++   .|++|.
T Consensus       137 k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~------G~-----~~~~~~C~~C~G~G~~~~~~C~~C~  204 (373)
T PRK14301        137 VTLRIPKNVTCDDCGGSGAAPGTSPETCRHCGGSGQVRQSQ------GF-----FQIAVPCPVCRGEGRVITHPCPKCK  204 (373)
T ss_pred             EEEEeeecccCCCCCCcccCCCCCCcccCCccCeeEEEEEe------ee-----EEEEEeCCCCCceeeecCCCCCCCC
Confidence            3455567889999999996      5799999999875432      11     1236688888888875   577774

>PRK14282 chaperone protein DnaJ; Provisional

Probab=97.59  E-value=4.3e-05  Score=73.13  Aligned_cols=63  Identities=25%  Similarity=0.490  Sum_probs=43.6

Q ss_pred             hccccccccccccccccce------ecCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc---ccccCc
Q 022585          224 NNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---GWTPNE  293 (295)
Q Consensus       224 NNvkqQekkRC~YC~GTGy------L~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV---mCpTC~  293 (295)
                      .+++-.....|..|+|+|.      ..|..|+|+|.+........  |-     .....+|+.|.|+|++   .|++|.
T Consensus       145 ~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~--G~-----~~~~~~C~~C~G~G~~~~~~C~~C~  216 (369)
T PRK14282        145 IPVEYDRYETCPHCGGTGVEPGSGYVTCPKCHGTGRIREERRSFF--GV-----FVSERTCERCGGTGKIPGEYCHECG  216 (369)
T ss_pred             EEEEeeecccCCCCCccCCCCCCCCcCCCCCCCcCEEEEEEEccC--cc-----eEEEEECCCCCCcceeCCCCCCCCC
Confidence            4455567789999999996      47999999998754432111  10     1235589999998866   577774

>PRK14296 chaperone protein DnaJ; Provisional

Probab=97.57  E-value=3.7e-05  Score=73.93  Aligned_cols=63  Identities=21%  Similarity=0.583  Sum_probs=44.1

Q ss_pred             hccccccccccccccccce------ecCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc---ccccCc
Q 022585          224 NNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---GWTPNE  293 (295)
Q Consensus       224 NNvkqQekkRC~YC~GTGy------L~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV---mCpTC~  293 (295)
                      .+++-.....|..|+|+|.      ..|..|+|+|.+.......       +...+...+|+.|.|+|++   .|++|.
T Consensus       142 ~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~g-------~~~~q~~~~C~~C~G~G~~~~~~C~~C~  213 (372)
T PRK14296        142 KIIELDLLTNCSKCFGSGAESNSDIHICNNCHGTGEVLVQKNMG-------FFQFQQSAKCNVCNGAGKIIKNKCKNCK  213 (372)
T ss_pred             EEEEEeeeeccCCCCCCccCCCCCCccCCCCCCCceEEEEEecc-------ceEEEEEecCCCcCCcceeecccccCCC
Confidence            3455567789999999996      4699999999886543211       0111235689999999876   488885

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=97.57  E-value=5.1e-05  Score=71.80  Aligned_cols=63  Identities=24%  Similarity=0.586  Sum_probs=44.7

Q ss_pred             hccccccccccccccccce------ecCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc---ccccCc
Q 022585          224 NNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---GWTPNE  293 (295)
Q Consensus       224 NNvkqQekkRC~YC~GTGy------L~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV---mCpTC~  293 (295)
                      .+++-.....|..|+|+|.      ..|..|+|+|.+.......-  |-     .....+|++|.|.|++   .|+.|.
T Consensus       136 ~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~--g~-----~~~~~~C~~C~G~G~~~~~~C~~C~  207 (354)
T TIGR02349       136 KEIEIPRKESCETCHGTGAKPGTDPKTCPTCGGTGQVRRQQGTPF--GF-----FQQQQTCPTCGGEGKIIKEPCSTCK  207 (354)
T ss_pred             EEEEeecCCcCCCCCCCCCCCCCCCccCCCCCCeeEEEEEEeccC--Cc-----eEEEEecCCCCCcceecCCCCCCCC
Confidence            4555667889999999994      57999999998765432110  00     1235689999999976   588885

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PRK10767 chaperone protein DnaJ; Provisional

Probab=97.55  E-value=5.6e-05  Score=72.21  Aligned_cols=59  Identities=22%  Similarity=0.583  Sum_probs=42.7

Q ss_pred             hcccccccccccccccccee------cCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc---ccccCc
Q 022585          224 NNVKQQEQKRCKYCLGTGYL------ACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---GWTPNE  293 (295)
Q Consensus       224 NNvkqQekkRC~YC~GTGyL------~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV---mCpTC~  293 (295)
                      .+++-.....|..|+|+|..      .|..|+|+|.+....      |-     .....+|+.|.|.|++   .|++|.
T Consensus       135 ~~v~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~------g~-----~~~~~~C~~C~G~G~~~~~~C~~C~  202 (371)
T PRK10767        135 KEIRIPTLVTCDTCHGSGAKPGTSPKTCPTCHGAGQVRMQQ------GF-----FTVQQTCPTCHGRGKIIKDPCKKCH  202 (371)
T ss_pred             EEEeeeecccCCCCCCcccCCCCCCccCCCCCCeeEEEEee------ce-----EEEEEeCCCCCCceeECCCCCCCCC
Confidence            44555678899999999964      799999999875432      11     1234578888888876   687775

>PRK14285 chaperone protein DnaJ; Provisional

Probab=97.53  E-value=6e-05  Score=72.28  Aligned_cols=59  Identities=27%  Similarity=0.570  Sum_probs=42.8

Q ss_pred             hccccccccccccccccce------ecCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc---ccccCc
Q 022585          224 NNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---GWTPNE  293 (295)
Q Consensus       224 NNvkqQekkRC~YC~GTGy------L~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV---mCpTC~  293 (295)
                      .+++-.....|..|+|+|.      ..|..|+|+|.+...      .|-     .....+|+.|.|.|++   .|++|.
T Consensus       139 ~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~------~G~-----~~~~~~C~~C~G~G~~~~~~C~~C~  206 (365)
T PRK14285        139 NNINITRNMLCESCLGKKSEKGTSPSICNMCNGSGRVMQG------GGF-----FRVTTTCPKCYGNGKIISNPCKSCK  206 (365)
T ss_pred             EEEEeeecccCCCCCCcccCCCCCCccCCCccCceeEEec------Cce-----eEEeeecCCCCCcccccCCCCCCCC
Confidence            4566667889999999995      579999999987531      111     1246678888888866   577774

>PRK14286 chaperone protein DnaJ; Provisional

Probab=97.53  E-value=5.6e-05  Score=72.63  Aligned_cols=59  Identities=22%  Similarity=0.532  Sum_probs=42.0

Q ss_pred             hccccccccccccccccce------ecCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc---ccccCc
Q 022585          224 NNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---GWTPNE  293 (295)
Q Consensus       224 NNvkqQekkRC~YC~GTGy------L~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV---mCpTC~  293 (295)
                      .+++-.....|..|+|+|.      ..|..|+|+|.+....      |-     .....+|+.|.|+|++   .|++|.
T Consensus       143 k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~------G~-----~~~~~~C~~C~G~G~~~~~~C~~C~  210 (372)
T PRK14286        143 YKIEIPRLESCVDCNGSGASKGSSPTTCPDCGGSGQIRRTQ------GF-----FSVATTCPTCRGKGTVISNPCKTCG  210 (372)
T ss_pred             EEEEeeccccCCCCcCCCcCCCCCCccCCCCcCeEEEEEEe------ce-----EEEEEeCCCCCceeeEecccCCCCC
Confidence            3455567889999999996      6899999999875432      11     1235578888888864   577774

>PRK14284 chaperone protein DnaJ; Provisional

Probab=97.50  E-value=7e-05  Score=72.34  Aligned_cols=59  Identities=27%  Similarity=0.607  Sum_probs=41.6

Q ss_pred             hccccccccccccccccce------ecCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc---ccccCc
Q 022585          224 NNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---GWTPNE  293 (295)
Q Consensus       224 NNvkqQekkRC~YC~GTGy------L~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV---mCpTC~  293 (295)
                      .+++-.....|..|+|+|.      ..|..|+|+|.+....      |-     .....+|+.|.|+|++   .|++|.
T Consensus       151 ~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~------G~-----~~~~~~C~~C~G~G~~~~~~C~~C~  218 (391)
T PRK14284        151 KELLVSGYKSCDACSGSGANSSQGIKVCDRCKGSGQVVQSR------GF-----FSMASTCPECGGEGRVITDPCSVCR  218 (391)
T ss_pred             EEEEEeeeccCCCCcccccCCCCCCeecCccCCeeEEEEEe------ce-----EEEEEECCCCCCCCcccCCcCCCCC
Confidence            3455567889999999996      4699999999875322      10     1235578888888865   577774

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=97.49  E-value=6.4e-05  Score=73.93  Aligned_cols=63  Identities=22%  Similarity=0.539  Sum_probs=44.2

Q ss_pred             hccccccccccccccccce-----ecCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc-----ccccCc
Q 022585          224 NNVKQQEQKRCKYCLGTGY-----LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV-----GWTPNE  293 (295)
Q Consensus       224 NNvkqQekkRC~YC~GTGy-----L~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV-----mCpTC~  293 (295)
                      .+++-.....|..|+|+|.     ..|..|+|+|..+......       +.......+|+.|.|+|++     .|++|.
T Consensus       143 ~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~g-------~~~~q~~~~C~~C~G~G~~i~~~~~C~~C~  215 (421)
T PTZ00037        143 RKLAINKDVICANCEGHGGPKDAFVDCKLCNGQGIRVQIRQMG-------SMIHQTQSTCNSCNGQGKIIPESKKCKNCS  215 (421)
T ss_pred             eEEEeeccccccccCCCCCCCCCCccCCCCCCCCeEEEEEeec-------ceeeEEEEeCCCCCCcceeccccccCCcCC
Confidence            3445557789999999996     4799999999864432211       0111246689999999986     499885

>PRK14279 chaperone protein DnaJ; Provisional

Probab=97.47  E-value=7.7e-05  Score=72.26  Aligned_cols=59  Identities=22%  Similarity=0.582  Sum_probs=42.7

Q ss_pred             hccccccccccccccccce------ecCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc---ccccCc
Q 022585          224 NNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---GWTPNE  293 (295)
Q Consensus       224 NNvkqQekkRC~YC~GTGy------L~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV---mCpTC~  293 (295)
                      .+++-.....|..|+|+|.      ..|..|+|+|.++...      +.     .....+|+.|.|+|++   .|++|.
T Consensus       166 ~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~------g~-----~~~~~~C~~C~G~G~~i~~~C~~C~  233 (392)
T PRK14279        166 MPLRLTSPAPCTTCHGSGARPGTSPKVCPTCNGSGVISRNQ------GA-----FGFSEPCTDCRGTGSIIEDPCEECK  233 (392)
T ss_pred             EEEeeeccccCCCCccccccCCCCCCCCCCCcceEEEEEEe------cc-----eEEEEecCCCCceeEEeCCcCCCCC
Confidence            3455567889999999997      5699999999876432      10     0235678888888864   577774

>PRK14276 chaperone protein DnaJ; Provisional

Probab=97.46  E-value=7.5e-05  Score=71.87  Aligned_cols=63  Identities=22%  Similarity=0.570  Sum_probs=42.4

Q ss_pred             hccccccccccccccccce------ecCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc---ccccCc
Q 022585          224 NNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---GWTPNE  293 (295)
Q Consensus       224 NNvkqQekkRC~YC~GTGy------L~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV---mCpTC~  293 (295)
                      .+++-.....|..|+|+|.      ..|..|+|+|.+........  |-     .....+|+.|.|+|++   .|+.|.
T Consensus       139 ~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~--G~-----~~~~~~C~~C~G~G~~~~~~C~~C~  210 (380)
T PRK14276        139 KEVSYNREATCHTCNGSGAKPGTSPVTCGKCHGSGVITVDTQTPL--GM-----MRRQVTCDVCHGTGKEIKEPCQTCH  210 (380)
T ss_pred             EEEEeeccccCCCCcCcccCCCCCCccCCCCCCeeEEEEEEecCC--ce-----EEEEEECCCCCCCCccccCCCCCCC
Confidence            4455567889999999996      57999999998754321110  00     0125578888888865   477774

>PRK14278 chaperone protein DnaJ; Provisional

Probab=97.46  E-value=7.5e-05  Score=71.92  Aligned_cols=63  Identities=22%  Similarity=0.536  Sum_probs=42.3

Q ss_pred             hccccccccccccccccce------ecCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc---ccccCc
Q 022585          224 NNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---GWTPNE  293 (295)
Q Consensus       224 NNvkqQekkRC~YC~GTGy------L~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV---mCpTC~  293 (295)
                      .+++-.....|..|+|+|.      ..|..|+|+|.+........  |.     .....+|+.|.|+|++   .|+.|.
T Consensus       132 ~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~--g~-----~~~~~~C~~C~G~G~~~~~~C~~C~  203 (378)
T PRK14278        132 KQVTVDTAVLCDRCHGKGTAGDSKPVTCDTCGGRGEVQTVQRSFL--GQ-----VMTSRPCPTCRGVGEVIPDPCHECA  203 (378)
T ss_pred             EEEEEEeeccCCCCcCccCCCCCCceecCCccCceEEEEEEeccc--ee-----EEEEEECCCCCccceeeCCCCCCCC
Confidence            3445567889999999995      57999999998754322110  00     1134578888888865   477774

>PRK14287 chaperone protein DnaJ; Provisional

Probab=97.45  E-value=7.1e-05  Score=71.94  Aligned_cols=63  Identities=22%  Similarity=0.598  Sum_probs=43.0

Q ss_pred             hccccccccccccccccce------ecCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc---ccccCc
Q 022585          224 NNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---GWTPNE  293 (295)
Q Consensus       224 NNvkqQekkRC~YC~GTGy------L~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV---mCpTC~  293 (295)
                      .+++-.....|..|+|+|.      ..|..|+|+|.+........  |-     .....+|+.|.|.|++   .|++|.
T Consensus       131 ~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~--G~-----~~~~~~C~~C~G~G~~~~~~C~~C~  202 (371)
T PRK14287        131 TEIEIPREETCGTCHGSGAKPGTKPETCSHCGGSGQLNVEQNTPF--GR-----VVNRRVCHHCEGTGKIIKQKCATCG  202 (371)
T ss_pred             EEEEEeeeccCCCCCCcccCCCCCCcccCCCCCEEEEEEEEecCC--ce-----EEEEEeCCCCCCCCccccccCCCCC
Confidence            4555567889999999995      56999999998754321111  00     0124578888888876   577774

>PRK14297 chaperone protein DnaJ; Provisional

Probab=97.44  E-value=8.8e-05  Score=71.29  Aligned_cols=63  Identities=29%  Similarity=0.635  Sum_probs=44.1

Q ss_pred             hccccccccccccccccce------ecCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc---ccccCc
Q 022585          224 NNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---GWTPNE  293 (295)
Q Consensus       224 NNvkqQekkRC~YC~GTGy------L~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV---mCpTC~  293 (295)
                      .+++-.....|..|+|+|.      ..|..|+|+|.+........  |.     .....+|+.|.|.|++   .|++|.
T Consensus       141 ~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~--G~-----~~~~~~C~~C~G~G~~~~~~C~~C~  212 (380)
T PRK14297        141 KEISVTRNENCETCNGTGAKPGTSPKTCDKCGGTGQIRVQRNTPL--GS-----FVSTTTCDKCGGSGKVIEDPCNKCH  212 (380)
T ss_pred             EEEEeeeeccCCCcccccccCCCcCccCCCccCeEEEEEEEEcCC--ce-----eEEEEeCCCCCCCceEcCCCCCCCC
Confidence            3455567889999999996      57999999998764432111  10     1236688888888866   688875

>PRK14280 chaperone protein DnaJ; Provisional

Probab=97.44  E-value=8e-05  Score=71.60  Aligned_cols=63  Identities=19%  Similarity=0.598  Sum_probs=41.9

Q ss_pred             hccccccccccccccccce------ecCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc---ccccCc
Q 022585          224 NNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---GWTPNE  293 (295)
Q Consensus       224 NNvkqQekkRC~YC~GTGy------L~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV---mCpTC~  293 (295)
                      .+++-.....|..|+|+|.      ..|..|+|+|.+........  |-     .....+|+.|.|.|++   .|++|.
T Consensus       136 ~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~--g~-----~~~~~~C~~C~G~G~~~~~~C~~C~  207 (376)
T PRK14280        136 KEIEIPKEETCDTCHGSGAKPGTSKETCSHCGGSGQVSVEQNTPF--GR-----VVNRQTCPHCNGTGQEIKEKCPTCH  207 (376)
T ss_pred             eEEEEeeeccCCCCCCcccCCCCCCccCCCCCCEEEEEEEeecCC--ce-----EEEEEEcCCCCCCCceecCCCCCCC
Confidence            4555667889999999995      57999999998754321110  00     0134578888888865   477774

>PRK14294 chaperone protein DnaJ; Provisional

Probab=97.42  E-value=9.7e-05  Score=70.70  Aligned_cols=59  Identities=25%  Similarity=0.628  Sum_probs=42.9

Q ss_pred             hccccccccccccccccce------ecCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc---ccccCc
Q 022585          224 NNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---GWTPNE  293 (295)
Q Consensus       224 NNvkqQekkRC~YC~GTGy------L~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV---mCpTC~  293 (295)
                      .+++-.....|..|+|+|.      ..|..|+|+|.+....      |-     .....+|+.|.|.|++   .|++|.
T Consensus       137 ~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~------G~-----~~~~~~C~~C~G~G~~~~~~C~~C~  204 (366)
T PRK14294        137 KEIRIQKLETCEECHGSGCEPGTSPTTCPQCGGSGQVTQSQ------GF-----FSIRTTCPRCRGMGKVIVSPCKTCH  204 (366)
T ss_pred             EEEEeeecccCCCCCCccccCCCCcccCCCcCCeEEEEEEe------ee-----EEEEeeCCCCCCcCeecCcCCCCCC
Confidence            4555667889999999996      4799999999875321      11     1235678888888866   677774

>PRK14295 chaperone protein DnaJ; Provisional

Probab=97.42  E-value=8.8e-05  Score=71.81  Aligned_cols=59  Identities=31%  Similarity=0.615  Sum_probs=44.0

Q ss_pred             hccccccccccccccccce------ecCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc---ccccCc
Q 022585          224 NNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---GWTPNE  293 (295)
Q Consensus       224 NNvkqQekkRC~YC~GTGy------L~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV---mCpTC~  293 (295)
                      ..++-.....|..|+|+|.      ..|..|.|+|.+....      |.     .....+|+.|.|+|++   .|++|.
T Consensus       159 k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~------g~-----~~~~~~C~~C~G~G~~~~~~C~~C~  226 (389)
T PRK14295        159 VPLRLTSQAPCPACSGTGAKNGTTPRVCPTCSGTGQVSRNS------GG-----FSLSEPCPDCKGRGLIADDPCLVCK  226 (389)
T ss_pred             EEEEeeccccCCCCcccccCCCCCCcCCCCCCCEeEEEEEe------cc-----eEEEEecCCCcceeEEeccCCCCCC
Confidence            3555567889999999996      6799999999876432      11     1245689999999976   488885

>PRK14298 chaperone protein DnaJ; Provisional

Probab=97.40  E-value=0.00013  Score=70.34  Aligned_cols=63  Identities=29%  Similarity=0.589  Sum_probs=42.2

Q ss_pred             hccccccccccccccccce------ecCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc---ccccCc
Q 022585          224 NNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---GWTPNE  293 (295)
Q Consensus       224 NNvkqQekkRC~YC~GTGy------L~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV---mCpTC~  293 (295)
                      .+++-.....|..|+|+|.      ..|..|+|+|.+......  ..+.     .....+|+.|.|+|++   .|++|.
T Consensus       134 ~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~--~~g~-----~~~~~~C~~C~G~G~~~~~~C~~C~  205 (377)
T PRK14298        134 KDIDVPRAERCSTCSGTGAKPGTSPKRCPTCGGTGQVTTTRST--PLGQ-----FVTTTTCSTCHGRGQVIESPCPVCS  205 (377)
T ss_pred             EEEEEEeeccCCCCCCCcccCCCCCCcCCCCCCccEEEEEEec--Ccee-----EEEEEeCCCCCCCCcccCCCCCCCC
Confidence            3455567789999999997      679999999987644321  1110     1245567777777754   477664

>PRK14300 chaperone protein DnaJ; Provisional

Probab=97.39  E-value=0.00011  Score=70.63  Aligned_cols=59  Identities=24%  Similarity=0.610  Sum_probs=40.4

Q ss_pred             hccccccccccccccccce------ecCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc---ccccCc
Q 022585          224 NNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---GWTPNE  293 (295)
Q Consensus       224 NNvkqQekkRC~YC~GTGy------L~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV---mCpTC~  293 (295)
                      .+++-.....|..|+|+|.      ..|..|+|+|.+...-      |-     .....+|+.|.|.|++   .|++|.
T Consensus       138 k~i~~~r~~~C~~C~G~g~~~~~~~~~C~~C~G~G~~~~~~------g~-----~~~~~~C~~C~G~G~~~~~~C~~C~  205 (372)
T PRK14300        138 KNISFSSEVKCDTCHGSGSEKGETVTTCDACSGVGATRMQQ------GF-----FTIEQACHKCQGNGQIIKNPCKKCH  205 (372)
T ss_pred             EEEEeeeccccCCCCCcccCCCCCCccCCCccCeEEEEEee------ce-----EEEEEeCCCCCccceEeCCCCCCCC
Confidence            3444457789999999995      6799999999875321      10     0134467777777755   577774

>PRK14293 chaperone protein DnaJ; Provisional

Probab=97.38  E-value=0.00011  Score=70.61  Aligned_cols=63  Identities=21%  Similarity=0.576  Sum_probs=43.7

Q ss_pred             hcccccccccccccccccee------cCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc---ccccCc
Q 022585          224 NNVKQQEQKRCKYCLGTGYL------ACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---GWTPNE  293 (295)
Q Consensus       224 NNvkqQekkRC~YC~GTGyL------~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV---mCpTC~  293 (295)
                      .+++-.....|..|+|+|+.      .|..|.|+|.+........  |.     .....+|+.|.|.|++   .|++|.
T Consensus       136 k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~--g~-----~~~~~~C~~C~G~G~~~~~~C~~C~  207 (374)
T PRK14293        136 KEIRIPHLETCETCRGSGAKPGTGPTTCSTCGGAGQVRRATRTPF--GS-----FTQVSECPTCNGTGQVIEDPCDACG  207 (374)
T ss_pred             EEEEeeccccCCCCCCcCCCCCCCCeeCCCCCCcceEEEEEecCc--ce-----EEEEeeCCCCCcceeEeccCCCCCC
Confidence            45555678899999999974      5999999998754321100  00     1124689999999988   677774

>PRK14291 chaperone protein DnaJ; Provisional

Probab=97.33  E-value=0.00014  Score=69.98  Aligned_cols=59  Identities=24%  Similarity=0.537  Sum_probs=41.9

Q ss_pred             hccccccccccccccccce------ecCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCcc--cccccCc
Q 022585          224 NNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGK--VGWTPNE  293 (295)
Q Consensus       224 NNvkqQekkRC~YC~GTGy------L~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGK--VmCpTC~  293 (295)
                      .+++-.....|..|+|+|.      ..|..|+|+|.+...-      +-     .....+|+.|.|+|.  -.|++|.
T Consensus       149 ~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~------g~-----~~~~~~C~~C~G~G~~~~~C~~C~  215 (382)
T PRK14291        149 VSLEVPRYVPCEACGGTGYDPGSGEKVCPTCGGSGEIYQRG------GF-----FRISQTCPTCGGEGVLREPCSKCN  215 (382)
T ss_pred             EEEEEeeeccCCCCccccCCCCCCCccCCCCCCceEEEEec------ce-----EEEEecCCCCCCceEEccCCCCCC
Confidence            3455567889999999994      6799999999875431      10     123567888888883  3677775

>PRK14283 chaperone protein DnaJ; Provisional

Probab=97.31  E-value=0.00015  Score=69.75  Aligned_cols=63  Identities=22%  Similarity=0.558  Sum_probs=43.6

Q ss_pred             hccccccccccccccccce------ecCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc---ccccCc
Q 022585          224 NNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---GWTPNE  293 (295)
Q Consensus       224 NNvkqQekkRC~YC~GTGy------L~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV---mCpTC~  293 (295)
                      .+++-.....|..|+|+|.      ..|..|.|+|.+..........       .....+|+.|.|.|+.   .|.+|.
T Consensus       139 ~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~-------~~~~~~C~~C~G~G~~~~~~C~~C~  210 (378)
T PRK14283        139 KDIKVRHTKKCPVCNGSRAEPGSEVKTCPTCGGTGQVKQVRNTILGQ-------MMNVTTCPDCQGEGKIVEKPCSNCH  210 (378)
T ss_pred             eEEEeeeeccCCCCCccccCCCCCCccCCCcCCccEEEEEEeccCce-------EEEEEECCCCCccceecCCCCCCCC
Confidence            3455556789999999986      4699999999986443221110       0134588888888876   788885

>PRK14288 chaperone protein DnaJ; Provisional

Probab=97.29  E-value=0.00018  Score=69.18  Aligned_cols=59  Identities=29%  Similarity=0.637  Sum_probs=41.4

Q ss_pred             hccccccccccccccccce-----ecCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc---ccccCc
Q 022585          224 NNVKQQEQKRCKYCLGTGY-----LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---GWTPNE  293 (295)
Q Consensus       224 NNvkqQekkRC~YC~GTGy-----L~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV---mCpTC~  293 (295)
                      .+++-+....|..|+|+|.     ..|..|+|+|.+....      |.     ......|+.|.|+|++   .|++|.
T Consensus       133 ~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~------g~-----~~~~~~C~~C~G~G~~~~~~C~~C~  199 (369)
T PRK14288        133 KTIKVQYQSVCESCDGTGAKDKALETCKQCNGQGQVFMRQ------GF-----MSFAQTCGACQGKGKIIKTPCQACK  199 (369)
T ss_pred             EEEEEEeeccCCCCCCcccCCCCCcCCCCCCCCcEEEEEe------ce-----EEEEEecCCCCCCceEccccCccCC
Confidence            4455566779999999995     4699999999875432      11     1234578888888854   577774

>PRK14281 chaperone protein DnaJ; Provisional

Probab=97.26  E-value=0.00018  Score=69.79  Aligned_cols=63  Identities=25%  Similarity=0.502  Sum_probs=42.4

Q ss_pred             hccccccccccccccccce-----ecCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc---ccccCc
Q 022585          224 NNVKQQEQKRCKYCLGTGY-----LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---GWTPNE  293 (295)
Q Consensus       224 NNvkqQekkRC~YC~GTGy-----L~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV---mCpTC~  293 (295)
                      .+++-.....|..|+|+|.     ..|..|.|+|.++.........       .....+|+.|.|.|++   .|++|.
T Consensus       156 ~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~-------~~~~~~C~~C~G~G~~~~~~C~~C~  226 (397)
T PRK14281        156 KTLKIKKQVPCKECNGTGSKTGATETCPTCHGSGEVRQASKTMFGQ-------FVNITACPTCGGEGRVVKDRCPACY  226 (397)
T ss_pred             EEEEEEeeecCCCCCCcccCCCCCccCCCCCCCcEEEEEEecccce-------EEEEEecCCCcceeeeeCCCCCCCC
Confidence            4455567789999999996     4699999999875433211110       1134578888888864   577774

>PRK14277 chaperone protein DnaJ; Provisional

Probab=97.24  E-value=0.00018  Score=69.36  Aligned_cols=63  Identities=22%  Similarity=0.585  Sum_probs=41.9

Q ss_pred             hccccccccccccccccce------ecCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc---ccccCc
Q 022585          224 NNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---GWTPNE  293 (295)
Q Consensus       224 NNvkqQekkRC~YC~GTGy------L~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV---mCpTC~  293 (295)
                      .+++-.....|..|+|+|.      ..|..|.|+|.+........  |-     .....+|+.|.|+|++   .|++|.
T Consensus       148 ~~v~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~--G~-----~~~~~~C~~C~G~G~~~~~~C~~C~  219 (386)
T PRK14277        148 KEIEVERFEKCDVCKGSGAKPGSKPVTCPVCHGTGQVRTRQNTPF--GR-----IVNIRTCDRCHGEGKIITDPCNKCG  219 (386)
T ss_pred             EEEEEEeeccCCCCCCCCcCCCCCCccCCCCCCEEEEEEEEeccC--ce-----EEEEEECCCCCcceeeccCCCCCCC
Confidence            4455567889999999996      56999999998754321110  00     0123578888888865   477774

>PRK14289 chaperone protein DnaJ; Provisional

Probab=97.23  E-value=0.00024  Score=68.40  Aligned_cols=63  Identities=25%  Similarity=0.585  Sum_probs=41.6

Q ss_pred             hccccccccccccccccce------ecCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc---ccccCc
Q 022585          224 NNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---GWTPNE  293 (295)
Q Consensus       224 NNvkqQekkRC~YC~GTGy------L~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV---mCpTC~  293 (295)
                      .+++-.....|..|+|+|.      ..|..|+|+|.+........  |-     ......|+.|.|.|.+   .|++|.
T Consensus       147 ~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~--G~-----~~~~~~C~~C~G~G~~~~~~C~~C~  218 (386)
T PRK14289        147 KKFKVKKYVPCSHCHGTGAEGNNGSETCPTCKGSGSVTRVQNTIL--GT-----MQTQSTCPTCNGEGKIIKKKCKKCG  218 (386)
T ss_pred             EEEEEEeecccCCCCCCCCCCCCCCCcCCCCcCeEEEEEEEeccc--ce-----EEEEEecCCCCccccccCcCCCCCC
Confidence            4555567889999999996      57999999998865432111  00     0134567777777754   566664

>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation

Probab=97.05  E-value=0.00046  Score=51.53  Aligned_cols=39  Identities=36%  Similarity=1.048  Sum_probs=28.0

Q ss_pred             cccccccccccccee---------------cCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCc
Q 022585          229 QEQKRCKYCLGTGYL---------------ACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSG  285 (295)
Q Consensus       229 QekkRC~YC~GTGyL---------------~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaG  285 (295)
                      .....|+.|+|+|++               .|..|.|+|.+.                  ...+|+.|.|.|
T Consensus        13 ~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i------------------~~~~C~~C~G~g   66 (66)
T PF00684_consen   13 KKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKII------------------EKDPCKTCKGSG   66 (66)
T ss_dssp             TT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-------------------TSSB-SSSTTSS
T ss_pred             CCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEE------------------CCCCCCCCCCcC
Confidence            356789999999986               699999999872                  255899999986

DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.

>PRK14292 chaperone protein DnaJ; Provisional

Probab=97.03  E-value=0.00039  Score=66.54  Aligned_cols=62  Identities=21%  Similarity=0.504  Sum_probs=40.3

Q ss_pred             ccccccccccccccccce-------ecCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc---ccccCc
Q 022585          225 NVKQQEQKRCKYCLGTGY-------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---GWTPNE  293 (295)
Q Consensus       225 NvkqQekkRC~YC~GTGy-------L~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV---mCpTC~  293 (295)
                      +++-.....|..|+|+|.       ..|..|.|+|.+........  |-     .....+|+.|.|.|+.   .|++|.
T Consensus       133 ~v~~~r~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~~~~~--g~-----~~~~~~C~~C~G~G~~~~~~C~~C~  204 (371)
T PRK14292        133 EVEVDRLTECEHCHGSRTEPGGKPPKTCPTCRGAGAVRAQARTIF--GV-----VETQQPCPTCRGEGQIITDPCTVCR  204 (371)
T ss_pred             EEEEEeeecCCCCcccccCCCCCCCccCCCCCCccEEEEEEeccC--ce-----EEEeeecCCCcccceecCCCCCCCC
Confidence            344456678999999985       57999999998754321110  10     1124578888888765   577774

>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]

Probab=97.00  E-value=0.0003  Score=68.87  Aligned_cols=37  Identities=32%  Similarity=0.905  Sum_probs=25.5

Q ss_pred             ccccccccccccceecCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc
Q 022585          229 QEQKRCKYCLGTGYLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV  287 (295)
Q Consensus       229 QekkRC~YC~GTGyL~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV  287 (295)
                      ....+|..|+|+|...|.+|+|.|                      ..+|.+|+|+|++
T Consensus       232 gt~~~C~~C~G~G~~~C~tC~grG----------------------~k~C~TC~gtgsl  268 (406)
T KOG2813|consen  232 GTHDLCYMCHGRGIKECHTCKGRG----------------------KKPCTTCSGTGSL  268 (406)
T ss_pred             CccchhhhccCCCcccCCcccCCC----------------------CcccccccCccce
Confidence            345566666666666666666665                      4478888888876

>PRK14290 chaperone protein DnaJ; Provisional

Probab=96.97  E-value=0.00054  Score=65.60  Aligned_cols=63  Identities=24%  Similarity=0.605  Sum_probs=43.4

Q ss_pred             hccccccccccccccccce-----ecCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc---ccccCc
Q 022585          224 NNVKQQEQKRCKYCLGTGY-----LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---GWTPNE  293 (295)
Q Consensus       224 NNvkqQekkRC~YC~GTGy-----L~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV---mCpTC~  293 (295)
                      .+++-.....|..|+|+|.     ..|..|.|+|.+.....    .|-   ...+...+|+.|.|.|++   .|+.|.
T Consensus       142 ~~i~~~r~~~C~~C~G~g~~~~~~~~C~~C~G~G~~~~~~~----~g~---~~~~~~~~C~~C~G~G~~~~~~C~~C~  212 (365)
T PRK14290        142 KRIKYRRNAMCPDCSGTGAKNGKLITCPTCHGTGQQRIVRG----QGF---FRMVTVTTCRTCGGRGRIPEEKCPRCN  212 (365)
T ss_pred             EEEEeeecccCCCCccccCCCCCCccCCCCCCcCEEEEEec----cCe---EEEEEEEeCCCCCCceeEccCCCCCCC
Confidence            4566667889999999997     57999999998754321    010   000124678888888854   688884

>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]

Probab=96.79  E-value=0.00071  Score=70.31  Aligned_cols=25  Identities=36%  Similarity=0.749  Sum_probs=21.5

Q ss_pred             ccccccccccceec-----CccccCCceee
Q 022585          231 QKRCKYCLGTGYLA-----CARCSNTGSLV  255 (295)
Q Consensus       231 kkRC~YC~GTGyL~-----CArCsGSG~i~  255 (295)
                      .+.|+.|+|+||..     |..|.|+|...
T Consensus         2 ~~~C~~C~g~G~i~v~~e~c~vc~gtG~~~   31 (715)
T COG1107           2 IKKCPECGGKGKIVVGEEECPVCHGTGFSD   31 (715)
T ss_pred             CccccccCCCceEeeeeeeccccccccccc
Confidence            36799999999875     99999999873

>PRK14300 chaperone protein DnaJ; Provisional

Probab=96.72  E-value=0.0009  Score=64.38  Aligned_cols=40  Identities=30%  Similarity=0.867  Sum_probs=31.1

Q ss_pred             ccccccccccccee-----------cCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCcccc
Q 022585          230 EQKRCKYCLGTGYL-----------ACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKVG  288 (295)
Q Consensus       230 ekkRC~YC~GTGyL-----------~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKVm  288 (295)
                      ....|+.|+|+|.+           .|..|+|+|.+.                   ..+|+.|.|.|.++
T Consensus       161 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~-------------------~~~C~~C~G~g~v~  211 (372)
T PRK14300        161 TVTTCDACSGVGATRMQQGFFTIEQACHKCQGNGQII-------------------KNPCKKCHGMGRYH  211 (372)
T ss_pred             CCccCCCccCeEEEEEeeceEEEEEeCCCCCccceEe-------------------CCCCCCCCCceEEE
Confidence            35789999999976           577777777662                   34699999999863

>PRK14284 chaperone protein DnaJ; Provisional

Probab=96.69  E-value=0.00098  Score=64.50  Aligned_cols=39  Identities=36%  Similarity=0.953  Sum_probs=32.5

Q ss_pred             cccccccccccce-----------ecCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc
Q 022585          230 EQKRCKYCLGTGY-----------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV  287 (295)
Q Consensus       230 ekkRC~YC~GTGy-----------L~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV  287 (295)
                      ..+.|+.|+|+|.           ..|..|+|+|.+.                   ..+|+.|.|.|.+
T Consensus       174 ~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~-------------------~~~C~~C~G~g~v  223 (391)
T PRK14284        174 GIKVCDRCKGSGQVVQSRGFFSMASTCPECGGEGRVI-------------------TDPCSVCRGQGRI  223 (391)
T ss_pred             CCeecCccCCeeEEEEEeceEEEEEECCCCCCCCccc-------------------CCcCCCCCCccee
Confidence            4678999999998           5799999999762                   3469999999876

>PRK14296 chaperone protein DnaJ; Provisional

Probab=96.64  E-value=0.0011  Score=63.86  Aligned_cols=38  Identities=37%  Similarity=0.986  Sum_probs=31.2

Q ss_pred             cccccccccccee---------------cCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc
Q 022585          231 QKRCKYCLGTGYL---------------ACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV  287 (295)
Q Consensus       231 kkRC~YC~GTGyL---------------~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV  287 (295)
                      ...|..|+|+|.+               .|..|.|+|.+.                   ...|+.|.|.|.+
T Consensus       166 ~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~-------------------~~~C~~C~G~g~v  218 (372)
T PRK14296        166 IHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKII-------------------KNKCKNCKGKGKY  218 (372)
T ss_pred             CccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceee-------------------cccccCCCCceEE
Confidence            5679999999965               799999999773                   3469999998865

>PRK10767 chaperone protein DnaJ; Provisional

Probab=96.60  E-value=0.0014  Score=62.85  Aligned_cols=38  Identities=34%  Similarity=1.023  Sum_probs=31.1

Q ss_pred             cccccccccccee-----------cCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc
Q 022585          231 QKRCKYCLGTGYL-----------ACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV  287 (295)
Q Consensus       231 kkRC~YC~GTGyL-----------~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV  287 (295)
                      ...|+.|+|+|.+           .|..|+|+|.+.                   ..+|+.|.|.|.+
T Consensus       159 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~-------------------~~~C~~C~G~g~v  207 (371)
T PRK10767        159 PKTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKII-------------------KDPCKKCHGQGRV  207 (371)
T ss_pred             CccCCCCCCeeEEEEeeceEEEEEeCCCCCCceeEC-------------------CCCCCCCCCCceE
Confidence            4689999999976           499999999762                   3469999998876

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=96.59  E-value=0.0014  Score=64.52  Aligned_cols=39  Identities=36%  Similarity=1.026  Sum_probs=32.2

Q ss_pred             cccccccccccce-------------ecCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc
Q 022585          230 EQKRCKYCLGTGY-------------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV  287 (295)
Q Consensus       230 ekkRC~YC~GTGy-------------L~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV  287 (295)
                      ..+.|+.|+|+|.             ..|.+|+|+|.+.                   +.+|+.|.|.|.+
T Consensus       158 ~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G~~i-------------------~~pC~~C~G~G~v  209 (371)
T COG0484         158 DPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKII-------------------KDPCGKCKGKGRV  209 (371)
T ss_pred             CCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCccceeEC-------------------CCCCCCCCCCCeE
Confidence            6789999999994             5699999999772                   4588888888875

>PRK14278 chaperone protein DnaJ; Provisional

Probab=96.58  E-value=0.0013  Score=63.55  Aligned_cols=38  Identities=32%  Similarity=0.920  Sum_probs=31.0

Q ss_pred             ccccccccccce---------------ecCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc
Q 022585          231 QKRCKYCLGTGY---------------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV  287 (295)
Q Consensus       231 kkRC~YC~GTGy---------------L~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV  287 (295)
                      ...|..|+|+|.               ..|..|+|+|.+.                   ..+|+.|.|.|.+
T Consensus       156 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-------------------~~~C~~C~G~g~v  208 (378)
T PRK14278        156 PVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVI-------------------PDPCHECAGDGRV  208 (378)
T ss_pred             ceecCCccCceEEEEEEeccceeEEEEEECCCCCccceee-------------------CCCCCCCCCceeE
Confidence            468999999995               4699999999763                   2369999999876

>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.54  E-value=0.0025  Score=60.82  Aligned_cols=55  Identities=20%  Similarity=0.428  Sum_probs=45.4

Q ss_pred             cccccccccccccceecCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCcccccccCc
Q 022585          228 QQEQKRCKYCLGTGYLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKVGWTPNE  293 (295)
Q Consensus       228 qQekkRC~YC~GTGyL~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKVmCpTC~  293 (295)
                      +++.-.|..|.|-++++|..|+||-++...   ++.+        ....||+.|.=-|-|.||.|-
T Consensus       226 ~~~~~~C~~CGg~rFlpC~~C~GS~kv~~~---~~~~--------~~~~rC~~CNENGLvrCp~Cs  280 (281)
T KOG2824|consen  226 CEGGGVCESCGGARFLPCSNCHGSCKVHEE---EEDD--------GGVLRCLECNENGLVRCPVCS  280 (281)
T ss_pred             CCCCCcCCCcCCcceEecCCCCCceeeeee---ccCC--------CcEEECcccCCCCceeCCccC
Confidence            556689999999999999999999887532   2222        368899999999999999994

>PRK14288 chaperone protein DnaJ; Provisional

Probab=96.51  E-value=0.0017  Score=62.58  Aligned_cols=39  Identities=28%  Similarity=0.852  Sum_probs=31.6

Q ss_pred             ccccccccccccee-----------cCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc
Q 022585          230 EQKRCKYCLGTGYL-----------ACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV  287 (295)
Q Consensus       230 ekkRC~YC~GTGyL-----------~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV  287 (295)
                      ....|+.|+|+|.+           .|..|.|+|.+.                   ..+|+.|.|.|.+
T Consensus       155 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~-------------------~~~C~~C~G~g~v  204 (369)
T PRK14288        155 ALETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKII-------------------KTPCQACKGKTYI  204 (369)
T ss_pred             CCcCCCCCCCCcEEEEEeceEEEEEecCCCCCCceEc-------------------cccCccCCCcceE
Confidence            35789999999975           599999999762                   3469999998865

>PRK14285 chaperone protein DnaJ; Provisional

Probab=96.50  E-value=0.0016  Score=62.66  Aligned_cols=38  Identities=29%  Similarity=0.980  Sum_probs=30.6

Q ss_pred             cccccccccccee-----------cCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc
Q 022585          231 QKRCKYCLGTGYL-----------ACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV  287 (295)
Q Consensus       231 kkRC~YC~GTGyL-----------~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV  287 (295)
                      ...|..|+|+|.+           .|..|.|+|.+.                   ..+|+.|.|.|.+
T Consensus       163 ~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~-------------------~~~C~~C~G~g~v  211 (365)
T PRK14285        163 PSICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGKII-------------------SNPCKSCKGKGSL  211 (365)
T ss_pred             CccCCCccCceeEEecCceeEEeeecCCCCCccccc-------------------CCCCCCCCCCCEE
Confidence            5689999999965           788888888662                   3479999999866

>PRK14286 chaperone protein DnaJ; Provisional

Probab=96.48  E-value=0.0016  Score=62.80  Aligned_cols=39  Identities=28%  Similarity=0.873  Sum_probs=31.3

Q ss_pred             cccccccccccee-----------cCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCcccc
Q 022585          231 QKRCKYCLGTGYL-----------ACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKVG  288 (295)
Q Consensus       231 kkRC~YC~GTGyL-----------~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKVm  288 (295)
                      ...|..|+|+|.+           .|..|.|+|.+.                   ..+|+.|.|.|.+.
T Consensus       167 ~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~-------------------~~~C~~C~G~g~~~  216 (372)
T PRK14286        167 PTTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTVI-------------------SNPCKTCGGQGLQE  216 (372)
T ss_pred             CccCCCCcCeEEEEEEeceEEEEEeCCCCCceeeEe-------------------cccCCCCCCCcEEe
Confidence            4689999999965           699999999773                   33688999888764

>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]

Probab=96.44  E-value=0.0017  Score=67.61  Aligned_cols=29  Identities=28%  Similarity=0.985  Sum_probs=20.2

Q ss_pred             cccccccccccce------------------------ecCccccCCceeeeec
Q 022585          230 EQKRCKYCLGTGY------------------------LACARCSNTGSLVLIE  258 (295)
Q Consensus       230 ekkRC~YC~GTGy------------------------L~CArCsGSG~i~~~e  258 (295)
                      +.+-|+-|+|+|+                        ++|..|.|+|.+++.+
T Consensus        17 ~~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~v~~   69 (715)
T COG1107          17 GEEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVTVYD   69 (715)
T ss_pred             eeeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEEEEe
Confidence            4556888888774                        3678888888775433

>PRK14280 chaperone protein DnaJ; Provisional

Probab=96.42  E-value=0.0019  Score=62.20  Aligned_cols=39  Identities=38%  Similarity=1.020  Sum_probs=30.8

Q ss_pred             ccccccccccccee---------------cCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc
Q 022585          230 EQKRCKYCLGTGYL---------------ACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV  287 (295)
Q Consensus       230 ekkRC~YC~GTGyL---------------~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV  287 (295)
                      ....|..|+|+|.+               .|..|+|+|.+.                   ..+|+.|.|.|.+
T Consensus       159 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-------------------~~~C~~C~G~g~v  212 (376)
T PRK14280        159 SKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEI-------------------KEKCPTCHGKGKV  212 (376)
T ss_pred             CCccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCcee-------------------cCCCCCCCCceEE
Confidence            35689999999964               699999999762                   3469999998876

>PRK14301 chaperone protein DnaJ; Provisional

Probab=96.42  E-value=0.0018  Score=62.39  Aligned_cols=38  Identities=37%  Similarity=0.970  Sum_probs=30.4

Q ss_pred             cccccccccccee-----------cCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc
Q 022585          231 QKRCKYCLGTGYL-----------ACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV  287 (295)
Q Consensus       231 kkRC~YC~GTGyL-----------~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV  287 (295)
                      ...|+.|+|+|.+           .|..|+|+|.+.                   ..+|+.|.|.|.+
T Consensus       161 ~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~-------------------~~~C~~C~G~g~v  209 (373)
T PRK14301        161 PETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRVI-------------------THPCPKCKGSGIV  209 (373)
T ss_pred             CcccCCccCeeEEEEEeeeEEEEEeCCCCCceeeec-------------------CCCCCCCCCCcee
Confidence            4679999999964           699999999762                   3469999998865

>PRK14282 chaperone protein DnaJ; Provisional

Probab=96.42  E-value=0.0023  Score=61.49  Aligned_cols=40  Identities=40%  Similarity=0.958  Sum_probs=31.4

Q ss_pred             ccccccccccccee---------------cCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCcccc
Q 022585          230 EQKRCKYCLGTGYL---------------ACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKVG  288 (295)
Q Consensus       230 ekkRC~YC~GTGyL---------------~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKVm  288 (295)
                      ..+.|+.|+|+|.+               .|..|+|+|.+.                   ..+|+.|.|.|.+.
T Consensus       168 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-------------------~~~C~~C~G~g~v~  222 (369)
T PRK14282        168 GYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIP-------------------GEYCHECGGSGRIR  222 (369)
T ss_pred             CCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeC-------------------CCCCCCCCCceeEE
Confidence            35789999999975               588888888762                   34699999988664

>PRK14279 chaperone protein DnaJ; Provisional

Probab=96.39  E-value=0.002  Score=62.61  Aligned_cols=39  Identities=36%  Similarity=0.982  Sum_probs=31.7

Q ss_pred             ccccccccccccee-----------cCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc
Q 022585          230 EQKRCKYCLGTGYL-----------ACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV  287 (295)
Q Consensus       230 ekkRC~YC~GTGyL-----------~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV  287 (295)
                      ....|..|+|+|.+           .|..|.|+|.+.                   ..+|..|.|.|.+
T Consensus       189 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~i-------------------~~~C~~C~G~g~v  238 (392)
T PRK14279        189 SPKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSII-------------------EDPCEECKGTGVT  238 (392)
T ss_pred             CCCCCCCCcceEEEEEEecceEEEEecCCCCceeEEe-------------------CCcCCCCCCCeEE
Confidence            35789999999975           699999999873                   3469999998865

>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs

Probab=96.35  E-value=0.0044  Score=53.48  Aligned_cols=51  Identities=22%  Similarity=0.520  Sum_probs=40.4

Q ss_pred             ccccccccccccceecCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccccc
Q 022585          229 QEQKRCKYCLGTGYLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKVGW  289 (295)
Q Consensus       229 QekkRC~YC~GTGyL~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKVmC  289 (295)
                      +....|..|.|.++++|..|+||-++...+..  .        .....||+.|.=-|-+.|
T Consensus        97 ~~~~~C~~Cgg~rfv~C~~C~Gs~k~~~~~~~--~--------~~~~~rC~~Cnengl~~c  147 (147)
T cd03031          97 AGGGVCEGCGGARFVPCSECNGSCKVFAENAT--A--------AGGFLRCPECNENGLVRC  147 (147)
T ss_pred             cCCCCCCCCCCcCeEECCCCCCcceEEeccCc--c--------cccEEECCCCCccccccC
Confidence            34567999999999999999999988643311  0        135789999999999888

This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.

>PRK14297 chaperone protein DnaJ; Provisional

Probab=96.28  E-value=0.0026  Score=61.26  Aligned_cols=38  Identities=39%  Similarity=1.074  Sum_probs=29.6

Q ss_pred             cccccccccccee---------------cCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc
Q 022585          231 QKRCKYCLGTGYL---------------ACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV  287 (295)
Q Consensus       231 kkRC~YC~GTGyL---------------~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV  287 (295)
                      ...|+.|+|+|++               .|..|.|+|.+.                   ..+|+.|.|.|.+
T Consensus       165 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-------------------~~~C~~C~G~g~v  217 (380)
T PRK14297        165 PKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVI-------------------EDPCNKCHGKGKV  217 (380)
T ss_pred             CccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEc-------------------CCCCCCCCCCeEE
Confidence            5679999999965               588888888662                   3469999988854

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=96.15  E-value=0.0037  Score=59.31  Aligned_cols=39  Identities=41%  Similarity=0.984  Sum_probs=30.9

Q ss_pred             ccccccccccce---------------ecCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCcccc
Q 022585          231 QKRCKYCLGTGY---------------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKVG  288 (295)
Q Consensus       231 kkRC~YC~GTGy---------------L~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKVm  288 (295)
                      ...|..|+|+|.               ..|..|.|+|.+.                   ...|+.|.|.|.+.
T Consensus       160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-------------------~~~C~~C~G~g~v~  213 (354)
T TIGR02349       160 PKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKII-------------------KEPCSTCKGKGRVK  213 (354)
T ss_pred             CccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceec-------------------CCCCCCCCCCcEec
Confidence            678999999995               4699999999763                   23699999988764

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PRK14277 chaperone protein DnaJ; Provisional

Probab=96.14  E-value=0.0035  Score=60.64  Aligned_cols=39  Identities=36%  Similarity=1.066  Sum_probs=30.9

Q ss_pred             ccccccccccccee---------------cCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc
Q 022585          230 EQKRCKYCLGTGYL---------------ACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV  287 (295)
Q Consensus       230 ekkRC~YC~GTGyL---------------~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV  287 (295)
                      ....|..|+|+|.+               .|..|.|+|...                   ..+|+.|.|.|.+
T Consensus       171 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-------------------~~~C~~C~G~g~v  224 (386)
T PRK14277        171 KPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKII-------------------TDPCNKCGGTGRI  224 (386)
T ss_pred             CCccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeec-------------------cCCCCCCCCCcEE
Confidence            35789999999975               599999999762                   3368888888865

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=96.14  E-value=0.0038  Score=61.68  Aligned_cols=42  Identities=33%  Similarity=0.858  Sum_probs=32.9

Q ss_pred             cccccccccccce---------------ecCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCcccc
Q 022585          230 EQKRCKYCLGTGY---------------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKVG  288 (295)
Q Consensus       230 ekkRC~YC~GTGy---------------L~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKVm  288 (295)
                      ....|+.|+|+|.               ..|..|+|+|.+..                 ...+|+.|.|.|.+.
T Consensus       165 ~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~-----------------~~~~C~~C~G~g~v~  221 (421)
T PTZ00037        165 AFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIP-----------------ESKKCKNCSGKGVKK  221 (421)
T ss_pred             CCccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceecc-----------------ccccCCcCCCcceee
Confidence            3567999999995               37999999998732                 245799999998764

>PRK14295 chaperone protein DnaJ; Provisional

Probab=96.13  E-value=0.0031  Score=61.21  Aligned_cols=38  Identities=34%  Similarity=0.876  Sum_probs=30.9

Q ss_pred             ccccccccccce-----------ecCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc
Q 022585          231 QKRCKYCLGTGY-----------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV  287 (295)
Q Consensus       231 kkRC~YC~GTGy-----------L~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV  287 (295)
                      ...|..|+|+|.           ..|..|.|+|.+.                   ..+|+.|.|.|.+
T Consensus       183 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~-------------------~~~C~~C~G~g~~  231 (389)
T PRK14295        183 PRVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLIA-------------------DDPCLVCKGSGRA  231 (389)
T ss_pred             CcCCCCCCCEeEEEEEecceEEEEecCCCcceeEEe-------------------ccCCCCCCCCceE
Confidence            578999999996           4799999999763                   3468889888865

>PRK14294 chaperone protein DnaJ; Provisional

Probab=96.11  E-value=0.0036  Score=60.05  Aligned_cols=38  Identities=34%  Similarity=0.989  Sum_probs=30.4

Q ss_pred             cccccccccccee-----------cCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc
Q 022585          231 QKRCKYCLGTGYL-----------ACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV  287 (295)
Q Consensus       231 kkRC~YC~GTGyL-----------~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV  287 (295)
                      ...|..|+|+|.+           .|..|.|+|.+.                   ...|+.|.|.|.+
T Consensus       161 ~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~-------------------~~~C~~C~G~g~v  209 (366)
T PRK14294        161 PTTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGKVI-------------------VSPCKTCHGQGRV  209 (366)
T ss_pred             cccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCeec-------------------CcCCCCCCCceEe
Confidence            5689999999964           699999999762                   3368999988865

>PRK14293 chaperone protein DnaJ; Provisional

Probab=96.08  E-value=0.0038  Score=60.10  Aligned_cols=38  Identities=32%  Similarity=0.914  Sum_probs=29.5

Q ss_pred             cccccccccccee---------------cCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc
Q 022585          231 QKRCKYCLGTGYL---------------ACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV  287 (295)
Q Consensus       231 kkRC~YC~GTGyL---------------~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV  287 (295)
                      ...|+.|+|+|.+               .|..|.|.|.+.                   ..+|..|.|.|.+
T Consensus       160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-------------------~~~C~~C~G~g~v  212 (374)
T PRK14293        160 PTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVI-------------------EDPCDACGGQGVK  212 (374)
T ss_pred             CeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEe-------------------ccCCCCCCCCccc
Confidence            4679999999964               599999999762                   3368888888765

>PRK14281 chaperone protein DnaJ; Provisional

Probab=96.06  E-value=0.0039  Score=60.64  Aligned_cols=40  Identities=35%  Similarity=0.904  Sum_probs=31.6

Q ss_pred             ccccccccccccee---------------cCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCcccc
Q 022585          230 EQKRCKYCLGTGYL---------------ACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKVG  288 (295)
Q Consensus       230 ekkRC~YC~GTGyL---------------~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKVm  288 (295)
                      ....|..|+|+|.+               .|..|.|+|.+.                   ..+|+.|.|.|.+.
T Consensus       178 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-------------------~~~C~~C~G~g~v~  232 (397)
T PRK14281        178 ATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVV-------------------KDRCPACYGEGIKQ  232 (397)
T ss_pred             CCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeee-------------------CCCCCCCCCCccEe
Confidence            35789999999953               699999999773                   33699999988763

>PRK14291 chaperone protein DnaJ; Provisional

Probab=96.04  E-value=0.0045  Score=59.84  Aligned_cols=38  Identities=42%  Similarity=0.970  Sum_probs=29.8

Q ss_pred             ccccccccccccee-----------cCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc
Q 022585          230 EQKRCKYCLGTGYL-----------ACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV  287 (295)
Q Consensus       230 ekkRC~YC~GTGyL-----------~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV  287 (295)
                      ....|+.|+|+|.+           .|..|.|+|.+                    ...|+.|.|.|.+
T Consensus       172 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~--------------------~~~C~~C~G~g~v  220 (382)
T PRK14291        172 GEKVCPTCGGSGEIYQRGGFFRISQTCPTCGGEGVL--------------------REPCSKCNGRGLV  220 (382)
T ss_pred             CCccCCCCCCceEEEEecceEEEEecCCCCCCceEE--------------------ccCCCCCCCCceE
Confidence            36789999999965           79999999943                    2368888888865

>PRK14283 chaperone protein DnaJ; Provisional

Probab=95.90  E-value=0.0056  Score=59.01  Aligned_cols=39  Identities=46%  Similarity=1.008  Sum_probs=29.0

Q ss_pred             ccccccccccccee---------------cCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc
Q 022585          230 EQKRCKYCLGTGYL---------------ACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV  287 (295)
Q Consensus       230 ekkRC~YC~GTGyL---------------~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV  287 (295)
                      ....|..|+|+|.+               .|..|.|+|...                   ..+|.+|.|.|.+
T Consensus       162 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-------------------~~~C~~C~G~g~v  215 (378)
T PRK14283        162 EVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIV-------------------EKPCSNCHGKGVV  215 (378)
T ss_pred             CCccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceec-------------------CCCCCCCCCceee
Confidence            45779999999875               488888888662                   2358888887765

>PRK14292 chaperone protein DnaJ; Provisional

Probab=95.87  E-value=0.0057  Score=58.64  Aligned_cols=39  Identities=33%  Similarity=0.959  Sum_probs=31.4

Q ss_pred             ccccccccccccee---------------cCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc
Q 022585          230 EQKRCKYCLGTGYL---------------ACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV  287 (295)
Q Consensus       230 ekkRC~YC~GTGyL---------------~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV  287 (295)
                      ....|..|+|+|+.               .|..|+|+|...                   ..+|+.|.|.|.+
T Consensus       156 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-------------------~~~C~~C~G~g~v  209 (371)
T PRK14292        156 PPKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQII-------------------TDPCTVCRGRGRT  209 (371)
T ss_pred             CCccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceec-------------------CCCCCCCCCceEE
Confidence            36789999999975               499999999762                   3479999998866

>PRK14287 chaperone protein DnaJ; Provisional

Probab=95.80  E-value=0.0058  Score=58.97  Aligned_cols=40  Identities=38%  Similarity=1.020  Sum_probs=31.2

Q ss_pred             ccccccccccccee---------------cCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCcccc
Q 022585          230 EQKRCKYCLGTGYL---------------ACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKVG  288 (295)
Q Consensus       230 ekkRC~YC~GTGyL---------------~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKVm  288 (295)
                      ....|+.|+|+|++               .|..|.|+|.+.                   ..+|+.|.|.|.+.
T Consensus       154 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-------------------~~~C~~C~G~g~v~  208 (371)
T PRK14287        154 KPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKII-------------------KQKCATCGGKGKVR  208 (371)
T ss_pred             CCcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCccc-------------------cccCCCCCCeeEEe
Confidence            35789999999964               699999998762                   33699999888764

>TIGR02642 phage_xxxx uncharacterized phage protein

Probab=95.24  E-value=0.018  Score=51.99  Aligned_cols=27  Identities=33%  Similarity=0.824  Sum_probs=23.0

Q ss_pred             ccccccccccceec-----CccccCCceeeee
Q 022585          231 QKRCKYCLGTGYLA-----CARCSNTGSLVLI  257 (295)
Q Consensus       231 kkRC~YC~GTGyL~-----CArCsGSG~i~~~  257 (295)
                      ...|+.|+|+|++.     |..|+|+|++...
T Consensus        99 ~~~C~~C~G~G~~i~~~~~C~~C~G~G~v~~~  130 (186)
T TIGR02642        99 SCKCPRCRGTGLIQRRQRECDTCAGTGRFRPT  130 (186)
T ss_pred             CCcCCCCCCeeEEecCCCCCCCCCCccEEeee
Confidence            78899999999875     9999999988544

This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.

>PLN03165 chaperone protein dnaJ-related; Provisional

Probab=95.13  E-value=0.011  Score=49.62  Aligned_cols=23  Identities=35%  Similarity=0.921  Sum_probs=10.4

Q ss_pred             ccccccccccceecCccccCCce
Q 022585          231 QKRCKYCLGTGYLACARCSNTGS  253 (295)
Q Consensus       231 kkRC~YC~GTGyL~CArCsGSG~  253 (295)
                      ...|+.|+|+|+..|..|.|+|.
T Consensus        75 ~~~C~~C~G~Gk~~C~~C~G~G~   97 (111)
T PLN03165         75 VSKCINCDGAGSLTCTTCQGSGI   97 (111)
T ss_pred             EEECCCCCCcceeeCCCCCCCEE
Confidence            34444444444444444444443

>PRK14276 chaperone protein DnaJ; Provisional

Probab=94.79  E-value=0.023  Score=54.99  Aligned_cols=39  Identities=33%  Similarity=0.881  Sum_probs=29.4

Q ss_pred             ccccccccccccee---------------cCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc
Q 022585          230 EQKRCKYCLGTGYL---------------ACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV  287 (295)
Q Consensus       230 ekkRC~YC~GTGyL---------------~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV  287 (295)
                      ....|+.|+|+|.+               +|..|.|+|.+.                   +.+|+.|.|.|.+
T Consensus       162 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-------------------~~~C~~C~G~g~~  215 (380)
T PRK14276        162 SPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEI-------------------KEPCQTCHGTGHE  215 (380)
T ss_pred             CCccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCccc-------------------cCCCCCCCCceEE
Confidence            35689999999975               477777777552                   3469999998875

>TIGR02642 phage_xxxx uncharacterized phage protein

Probab=94.59  E-value=0.019  Score=51.80  Aligned_cols=30  Identities=30%  Similarity=0.840  Sum_probs=25.0

Q ss_pred             eecCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCcccc
Q 022585          242 YLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKVG  288 (295)
Q Consensus       242 yL~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKVm  288 (295)
                      ...|.+|+|+|.+..                 ...+|+.|.|+|++.
T Consensus        99 ~~~C~~C~G~G~~i~-----------------~~~~C~~C~G~G~v~  128 (186)
T TIGR02642        99 SCKCPRCRGTGLIQR-----------------RQRECDTCAGTGRFR  128 (186)
T ss_pred             CCcCCCCCCeeEEec-----------------CCCCCCCCCCccEEe
Confidence            889999999998742                 236899999999874

This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=94.56  E-value=0.033  Score=54.44  Aligned_cols=59  Identities=20%  Similarity=0.475  Sum_probs=41.0

Q ss_pred             ccccccccccccce----e-cCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc-----ccccCc
Q 022585          229 QEQKRCKYCLGTGY----L-ACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV-----GWTPNE  293 (295)
Q Consensus       229 QekkRC~YC~GTGy----L-~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV-----mCpTC~  293 (295)
                      +...-|.-|+|.|-    . .|..|.|+|..+........      +.-....+|..|.|+|..     .|++|.
T Consensus       125 ~~~~iCs~C~GsGgksg~~~~C~~C~GsGv~~~~~~~gPg------~~qs~q~~C~~C~G~G~~~~~kd~C~~C~  193 (337)
T KOG0712|consen  125 SRNFICSKCSGSGGKSGSAPKCTTCRGSGVQTRTRQMGPG------MVQSPQLVCDSCNGSGETISLKDRCKTCS  193 (337)
T ss_pred             ccCccCCcCCCCCCCCCCCCCCCCCCCCCceeEEEecccc------ccccceeEeccCCCccccccccccCcccc
Confidence            46678999999653    2 49999999987554322210      111356789999999998     999995

>PRK14298 chaperone protein DnaJ; Provisional

Probab=94.14  E-value=0.026  Score=54.75  Aligned_cols=39  Identities=44%  Similarity=1.014  Sum_probs=32.3

Q ss_pred             cccccccccccee---------------cCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCcccc
Q 022585          231 QKRCKYCLGTGYL---------------ACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKVG  288 (295)
Q Consensus       231 kkRC~YC~GTGyL---------------~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKVm  288 (295)
                      ...|+.|+|+|.+               .|..|.|+|.+.                   ..+|+.|.|.|.+.
T Consensus       158 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-------------------~~~C~~C~G~g~v~  211 (377)
T PRK14298        158 PKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVI-------------------ESPCPVCSGTGKVR  211 (377)
T ss_pred             CCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCccc-------------------CCCCCCCCCccEEE
Confidence            4789999999964               699999999762                   34699999999874

>PRK14289 chaperone protein DnaJ; Provisional

Probab=92.98  E-value=0.039  Score=53.34  Aligned_cols=41  Identities=29%  Similarity=0.899  Sum_probs=33.2

Q ss_pred             cccccccccccccee---------------cCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCcccc
Q 022585          229 QEQKRCKYCLGTGYL---------------ACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKVG  288 (295)
Q Consensus       229 QekkRC~YC~GTGyL---------------~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKVm  288 (295)
                      .....|+.|+|+|.+               .|..|.|+|.+.                   ..+|+.|.|.|.+.
T Consensus       169 ~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-------------------~~~C~~C~G~g~v~  224 (386)
T PRK14289        169 NGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKII-------------------KKKCKKCGGEGIVY  224 (386)
T ss_pred             CCCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCcccccc-------------------CcCCCCCCCCcEEe
Confidence            346789999999986               699999999662                   34799999999763

>PRK14290 chaperone protein DnaJ; Provisional

Probab=89.00  E-value=0.29  Score=47.14  Aligned_cols=39  Identities=36%  Similarity=0.926  Sum_probs=30.9

Q ss_pred             cccccccccccce---------------ecCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc
Q 022585          230 EQKRCKYCLGTGY---------------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV  287 (295)
Q Consensus       230 ekkRC~YC~GTGy---------------L~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV  287 (295)
                      ....|+.|+|+|.               ..|..|.|.|.+.                   ..+|+.|.|.|.+
T Consensus       164 ~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~-------------------~~~C~~C~G~g~v  217 (365)
T PRK14290        164 KLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIP-------------------EEKCPRCNGTGTV  217 (365)
T ss_pred             CCccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEc-------------------cCCCCCCCCceeE
Confidence            3568999999995               4799999999762                   3478899888865

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=86.34  E-value=0.75  Score=45.21  Aligned_cols=88  Identities=23%  Similarity=0.411  Sum_probs=58.4

Q ss_pred             hhHHHHHhcCccccccccCcceecccCcchhhhhHhhhHhhhccccccccccccccccceecCccccCCceeeee-cccc
Q 022585          183 SYADFIQSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGYLACARCSNTGSLVLI-EPVS  261 (295)
Q Consensus       183 sy~dfi~s~hlp~qlsqvDpiVAsfsGGAVGVisal~vvEiNNvkqQekkRC~YC~GTGyL~CArCsGSG~i~~~-e~~S  261 (295)
                      +++|+....+.|+.|+.  +.+-+-+-|.=|             +.-....|..|.|+|-..=.++.|.|..... ..|.
T Consensus       110 ~Le~~y~G~s~kl~l~~--~~iCs~C~GsGg-------------ksg~~~~C~~C~GsGv~~~~~~~gPg~~qs~q~~C~  174 (337)
T KOG0712|consen  110 TLEELYMGKSKKLFLSR--NFICSKCSGSGG-------------KSGSAPKCTTCRGSGVQTRTRQMGPGMVQSPQLVCD  174 (337)
T ss_pred             EHHHhhcCCccceeccc--CccCCcCCCCCC-------------CCCCCCCCCCCCCCCceeEEEeccccccccceeEec
Confidence            58999999999998875  344444444444             2224457888888888777777777765433 4566


Q ss_pred             ccCCCCCCCCCCCceeCCCCCCCccc
Q 022585          262 TVNGGDQPLSAPKTERCSNCSGSGKV  287 (295)
Q Consensus       262 ~~~Gs~~pl~~~~t~RCpnCsGaGKV  287 (295)
                      .|.|+..+  +....+|+.|.|++.+
T Consensus       175 ~C~G~G~~--~~~kd~C~~C~G~~~v  198 (337)
T KOG0712|consen  175 SCNGSGET--ISLKDRCKTCSGAKVV  198 (337)
T ss_pred             cCCCcccc--ccccccCcccccchhh
Confidence            66665333  2345688888888754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	295
1exk_A	79	DNAJ protein; extended beta-hairpin, CXXCXGXG, zin	98.41
2ctt_A	104	DNAJ homolog subfamily A member 3; ZING finger, be	98.34
1nlt_A	248	Protein YDJ1, mitochondrial protein import protein	97.82
1exk_A	79	DNAJ protein; extended beta-hairpin, CXXCXGXG, zin	97.66
2ctt_A	104	DNAJ homolog subfamily A member 3; ZING finger, be	97.61
1nlt_A	248	Protein YDJ1, mitochondrial protein import protein	97.17
3lcz_A	53	YCZA, inhibitor of trap, regulated by T-box (Trp)	96.08
3lcz_A	53	YCZA, inhibitor of trap, regulated by T-box (Trp)	95.9
2bx9_A	53	Anti-trap, AT, tryptophan RNA-binding attenuator p	95.9
2bx9_A	53	Anti-trap, AT, tryptophan RNA-binding attenuator p	94.18

>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1

Probab=98.41  E-value=1.5e-07  Score=69.61  Aligned_cols=58  Identities=21%  Similarity=0.606  Sum_probs=43.5

Q ss_pred             ccccccccccccccccce------ecCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc---ccccCc
Q 022585          225 NVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---GWTPNE  293 (295)
Q Consensus       225 NvkqQekkRC~YC~GTGy------L~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV---mCpTC~  293 (295)
                      .++-+....|..|+|+|+      ..|..|+|+|.+....      |.     .....+|+.|.|.|++   .|++|.
T Consensus         5 ~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~------g~-----~~~~~~C~~C~G~G~~~~~~C~~C~   71 (79)
T 1exk_A            5 EIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQ------GF-----FAVQQTCPHCQGRGTLIKDPCNKCH   71 (79)
T ss_dssp             SCCCCCEEECGGGTTTSBCSSSCCEECTTTTTSSEEEEEE------TT-----EEEEEECTTTTTSSEECSSBCGGGT
T ss_pred             EEEcccceECCCCcccccCCCccCCCCCCCcCeEEEEEEc------CC-----CEEeeECcCCCCccEECCCcCCCCC
Confidence            344557789999999996      6899999999875421      10     1235689999999988   888884

>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.34  E-value=3.2e-07  Score=71.82  Aligned_cols=58  Identities=22%  Similarity=0.538  Sum_probs=44.3

Q ss_pred             ccccccccccccccccc------eecCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc---ccccCc
Q 022585          225 NVKQQEQKRCKYCLGTG------YLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---GWTPNE  293 (295)
Q Consensus       225 NvkqQekkRC~YC~GTG------yL~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV---mCpTC~  293 (295)
                      .++-+....|..|+|+|      ...|..|+|+|.+....      |   +  .....+|+.|.|+|++   .|++|.
T Consensus        22 ~i~~~~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~~~~~~------G---~--~~~~~~C~~C~G~G~~i~~~C~~C~   88 (104)
T 2ctt_A           22 EFTVNIMDTCERCNGKGNEPGTKVQHCHYCGGSGMETINT------G---P--FVMRSTCRRCGGRGSIIISPCVVCR   88 (104)
T ss_dssp             TCCSSCCEECSSSSSSSSCTTCCCEECSSSSSSCEEEEEE------T---T--EEEEEECSSSSSSSEECSSCCSSSS
T ss_pred             EEEeeeeeECCCCcCCccCCCCCCccCCCCCCCEEEEEEe------C---C--EEEEEECCcCCCcceECCCcCCCCC
Confidence            34556778999999998      47899999999875432      1   1  1246689999999998   699884

>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1

Probab=97.82  E-value=5.6e-06  Score=73.95  Aligned_cols=62  Identities=21%  Similarity=0.484  Sum_probs=42.3

Q ss_pred             ccccccccccccccccc-----eecCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCcc-----cccccCc
Q 022585          225 NVKQQEQKRCKYCLGTG-----YLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGK-----VGWTPNE  293 (295)
Q Consensus       225 NvkqQekkRC~YC~GTG-----yL~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGK-----VmCpTC~  293 (295)
                      .++-.....|..|+|+|     ...|..|+|+|.+........       .......+|+.|.|+|+     ..|++|.
T Consensus        32 ~i~~~r~~~C~~C~G~G~~~g~~~~C~~C~G~G~~~~~~~~g~-------~~~~~~~~C~~C~G~G~~i~~~~~C~~C~  103 (248)
T 1nlt_A           32 KLALNKQILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQMGP-------MIQRFQTECDVCHGTGDIIDPKDRCKSCN  103 (248)
T ss_dssp             EEEEEEEEECTTTTTCSBSTTTCCCCTTSSSSSCEEEEEESSS-------EEEEEECSCTTCSSSSSCCCTTSBCSSST
T ss_pred             EEEeeEEEeCCCCcCccCCCCCCccCCCCCCCcEEEEEEecCc-------eEEEEEEcCCCCCCcCEEeccCCCCcccC
Confidence            44555678999999999     478999999998754321110       00024567888888884     4488884

>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1

Probab=97.66  E-value=1.6e-05  Score=58.59  Aligned_cols=39  Identities=33%  Similarity=1.019  Sum_probs=32.7

Q ss_pred             cccccccccccee-----------cCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCcccc
Q 022585          231 QKRCKYCLGTGYL-----------ACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKVG  288 (295)
Q Consensus       231 kkRC~YC~GTGyL-----------~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKVm  288 (295)
                      ...|+.|+|+|++           .|..|+|+|.+.                   ..+|+.|.|.|.+.
T Consensus        28 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~-------------------~~~C~~C~G~G~~~   77 (79)
T 1exk_A           28 PQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLI-------------------KDPCNKCHGHGRVE   77 (79)
T ss_dssp             CEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEEC-------------------SSBCGGGTTSSEEE
T ss_pred             CCCCCCCcCeEEEEEEcCCCEEeeECcCCCCccEEC-------------------CCcCCCCCCeEEEe
Confidence            4689999999975           799999999762                   34899999999863

>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.61  E-value=2.9e-05  Score=60.64  Aligned_cols=39  Identities=36%  Similarity=0.985  Sum_probs=32.6

Q ss_pred             cccccccccccee-----------cCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCcccc
Q 022585          231 QKRCKYCLGTGYL-----------ACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKVG  288 (295)
Q Consensus       231 kkRC~YC~GTGyL-----------~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKVm  288 (295)
                      ...|+.|+|+|++           .|..|+|+|.+.                   ..+|+.|.|.|.+.
T Consensus        45 ~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i-------------------~~~C~~C~G~G~v~   94 (104)
T 2ctt_A           45 VQHCHYCGGSGMETINTGPFVMRSTCRRCGGRGSII-------------------ISPCVVCRGAGQAK   94 (104)
T ss_dssp             CEECSSSSSSCEEEEEETTEEEEEECSSSSSSSEEC-------------------SSCCSSSSSCSEEC
T ss_pred             CccCCCCCCCEEEEEEeCCEEEEEECCcCCCcceEC-------------------CCcCCCCCCeeEEE
Confidence            5789999999965           799999999762                   34899999999874

>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1

Probab=97.17  E-value=0.00018  Score=64.24  Aligned_cols=41  Identities=32%  Similarity=0.836  Sum_probs=32.6

Q ss_pred             cccccccccccee---------------cCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCcccc
Q 022585          231 QKRCKYCLGTGYL---------------ACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKVG  288 (295)
Q Consensus       231 kkRC~YC~GTGyL---------------~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKVm  288 (295)
                      ...|+.|+|+|++               .|..|+|+|.+.                 ..+.+|+.|.|.|.+.
T Consensus        54 ~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i-----------------~~~~~C~~C~G~g~~~  109 (248)
T 1nlt_A           54 VKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDII-----------------DPKDRCKSCNGKKVEN  109 (248)
T ss_dssp             CCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCC-----------------CTTSBCSSSTTSCEEE
T ss_pred             CccCCCCCCCcEEEEEEecCceEEEEEEcCCCCCCcCEEe-----------------ccCCCCcccCCCceEe
Confidence            4789999999964               688888888663                 2356899999999763

>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A

Probab=96.08  E-value=0.0032  Score=45.28  Aligned_cols=28  Identities=25%  Similarity=0.757  Sum_probs=19.5

Q ss_pred             cccccccccccccce---ecCccccCCceee
Q 022585          228 QQEQKRCKYCLGTGY---LACARCSNTGSLV  255 (295)
Q Consensus       228 qQekkRC~YC~GTGy---L~CArCsGSG~i~  255 (295)
                      ||-...|+.|+|+|.   -+|..|+|+|.+.
T Consensus         6 qq~~~~C~~C~GsG~~i~~~C~~C~G~G~v~   36 (53)
T 3lcz_A            6 DDLETTCPNCNGSGREEPEPCPKCLGKGVIL   36 (53)
T ss_dssp             HHHEEECTTTTTSCEETTEECTTTTTSSEEE
T ss_pred             CceeccCcCCcccccCCCCcCCCCCCcEEEE
Confidence            344567888888888   4577777777653

>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A

Probab=95.90  E-value=0.0026  Score=45.76  Aligned_cols=28  Identities=29%  Similarity=0.713  Sum_probs=23.3

Q ss_pred             eecCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCcccc
Q 022585          242 YLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKVG  288 (295)
Q Consensus       242 yL~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKVm  288 (295)
                      ...|..|+|+|.+.                   ..+|++|.|.|.+.
T Consensus         9 ~~~C~~C~GsG~~i-------------------~~~C~~C~G~G~v~   36 (53)
T 3lcz_A            9 ETTCPNCNGSGREE-------------------PEPCPKCLGKGVIL   36 (53)
T ss_dssp             EEECTTTTTSCEET-------------------TEECTTTTTSSEEE
T ss_pred             eccCcCCcccccCC-------------------CCcCCCCCCcEEEE
Confidence            46899999999872                   35899999999874

>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*

Probab=95.90  E-value=0.0038  Score=44.89  Aligned_cols=12  Identities=42%  Similarity=1.082  Sum_probs=7.8

Q ss_pred             eeCCCCCCCccc
Q 022585          276 ERCSNCSGSGKV  287 (295)
Q Consensus       276 ~RCpnCsGaGKV  287 (295)
                      .+|++|.|.|++
T Consensus        24 ~~C~~C~G~G~v   35 (53)
T 2bx9_A           24 TPCPACSGKGVI   35 (53)
T ss_dssp             EECTTTTTSSEE
T ss_pred             CCCccCCCCccE
Confidence            367777777665

>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*

Probab=94.18  E-value=0.02  Score=41.03  Aligned_cols=26  Identities=27%  Similarity=0.741  Sum_probs=22.1

Q ss_pred             cccccccccccee---cCccccCCceeee
Q 022585          231 QKRCKYCLGTGYL---ACARCSNTGSLVL  256 (295)
Q Consensus       231 kkRC~YC~GTGyL---~CArCsGSG~i~~  256 (295)
                      ...|+.|+|+|+.   +|..|+|+|.+..
T Consensus         9 ~~~C~~C~GsG~~~~~~C~~C~G~G~v~~   37 (53)
T 2bx9_A            9 EVACPKCERAGEIEGTPCPACSGKGVILT   37 (53)
T ss_dssp             EEECTTTTTSSEETTEECTTTTTSSEEEC
T ss_pred             cccCCCCcceeccCCCCCccCCCCccEEE
Confidence            4589999999975   6999999998753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	295
d1exka_	79	Cysteine-rich domain of the chaperone protein DnaJ	98.22
d1nlta3	74	Mitochondrial protein import protein mas5 (Hsp40,	98.08
d1exka_	79	Cysteine-rich domain of the chaperone protein DnaJ	97.28
d1nlta3	74	Mitochondrial protein import protein mas5 (Hsp40,	96.95
d1m1qa_	90	Flavocytochrome c3 (respiratory fumarate reductase	95.39

>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Cysteine-rich domain of the chaperone protein DnaJ
species: Escherichia coli [TaxId: 562]

Probab=98.22  E-value=3.4e-07  Score=67.43  Aligned_cols=58  Identities=19%  Similarity=0.586  Sum_probs=43.0

Q ss_pred             ccccccccccccccccce------ecCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc---ccccCc
Q 022585          225 NVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---GWTPNE  293 (295)
Q Consensus       225 NvkqQekkRC~YC~GTGy------L~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV---mCpTC~  293 (295)
                      .++-+....|..|+|+|+      ..|..|+|+|.+.......           ....+|+.|.|+|++   .|++|.
T Consensus         5 ~i~i~~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~v~~~~g~~-----------~~~~~C~~C~G~G~~i~~~C~~C~   71 (79)
T d1exka_           5 EIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQGFF-----------AVQQTCPHCQGRGTLIKDPCNKCH   71 (79)
T ss_dssp             SCCCCCEEECGGGTTTSBCSSSCCEECTTTTTSSEEEEEETTE-----------EEEEECTTTTTSSEECSSBCGGGT
T ss_pred             EEEeeeeccCCCCcCcccCCCccceeCCCccceeEEEEecccc-----------eeeEECcccCcceeECCCCCCCCC
Confidence            445557788999999984      5699999999875432111           245679999999987   788885

>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.08  E-value=5.4e-07  Score=65.84  Aligned_cols=56  Identities=23%  Similarity=0.539  Sum_probs=40.4

Q ss_pred             ccccccccccce-----ecCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc-----ccccCc
Q 022585          231 QKRCKYCLGTGY-----LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV-----GWTPNE  293 (295)
Q Consensus       231 kkRC~YC~GTGy-----L~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV-----mCpTC~  293 (295)
                      +..|..|+|+|+     -.|..|+|+|.+........       .......+|+.|.|.|++     .|+.|.
T Consensus         2 ~v~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~g~-------~~~~~~~~C~~C~G~G~~i~~~~~C~~C~   67 (74)
T d1nlta3           2 QILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQMGP-------MIQRFQTECDVCHGTGDIIDPKDRCKSCN   67 (74)
T ss_dssp             EEECTTTTTCSBSTTTCCCCTTSSSSSCEEEEEESSS-------EEEEEECSCTTCSSSSSCCCTTSBCSSST
T ss_pred             ccCCcCCcccccCCCCCCCCCCCcceeeeeEEEEecC-------cEEEEEEECccCccceEEeCCCCCCCCCC
Confidence            467999999995     45999999998865432211       101245689999999987     588885

>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Cysteine-rich domain of the chaperone protein DnaJ
species: Escherichia coli [TaxId: 562]

Probab=97.28  E-value=4.5e-05  Score=55.77  Aligned_cols=40  Identities=33%  Similarity=1.001  Sum_probs=31.9

Q ss_pred             cccccccccccceec-----------CccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCcccc
Q 022585          230 EQKRCKYCLGTGYLA-----------CARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKVG  288 (295)
Q Consensus       230 ekkRC~YC~GTGyL~-----------CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKVm  288 (295)
                      ..+.|..|+|+|++.           |..|+|+|.+.                   ..+|+.|.|.|.|.
T Consensus        27 ~~~~C~~C~G~G~v~~~~g~~~~~~~C~~C~G~G~~i-------------------~~~C~~C~G~G~v~   77 (79)
T d1exka_          27 QPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLI-------------------KDPCNKCHGHGRVE   77 (79)
T ss_dssp             CCEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEEC-------------------SSBCGGGTTSSEEE
T ss_pred             cceeCCCccceeEEEEecccceeeEECcccCcceeEC-------------------CCCCCCCCCceEee
Confidence            356799999999774           88888888762                   23799999999873

>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.95  E-value=0.00025  Score=51.27  Aligned_cols=40  Identities=33%  Similarity=0.854  Sum_probs=29.8

Q ss_pred             cccccccccccee---------------cCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc
Q 022585          231 QKRCKYCLGTGYL---------------ACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV  287 (295)
Q Consensus       231 kkRC~YC~GTGyL---------------~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV  287 (295)
                      .+.|..|+|+|++               +|..|.|+|.+.                 ....+|+.|.|.|-+
T Consensus        18 ~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i-----------------~~~~~C~~C~G~g~v   72 (74)
T d1nlta3          18 VKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDII-----------------DPKDRCKSCNGKKVE   72 (74)
T ss_dssp             CCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCC-----------------CTTSBCSSSTTSCEE
T ss_pred             CCCCCCCcceeeeeEEEEecCcEEEEEEECccCccceEEe-----------------CCCCCCCCCCCeeEe
Confidence            4579999999964               477777777552                 234589999999854

>d1m1qa_ a.138.1.3 (A:) Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain {Shewanella oneidensis [TaxId: 70863]}

class: All alpha proteins
fold: Multiheme cytochromes
superfamily: Multiheme cytochromes
family: Di-heme elbow motif
domain: Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain
species: Shewanella oneidensis [TaxId: 70863]

Probab=95.39  E-value=0.0022  Score=46.25  Aligned_cols=53  Identities=15%  Similarity=0.213  Sum_probs=31.5

Q ss_pred             cccccccccee---------cCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc---ccccC
Q 022585          233 RCKYCLGTGYL---------ACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---GWTPN  292 (295)
Q Consensus       233 RC~YC~GTGyL---------~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV---mCpTC  292 (295)
                      .|..|||.|..         .|..|+|+|..........  +.     ...-..|.+|.|.|+.   .|.+|
T Consensus        13 ~C~~CH~~~~~~~~~~~~~~~C~~CHg~~~~~~~~~~~h--~~-----~~~c~~CH~~H~~~~~~~~~C~~C   77 (90)
T d1m1qa_          13 GCESCHKDGTPSADGAFEFAQCQSCHGKLSEMDAVHKPH--DG-----NLVCADCHAVHDMNVGQKPTCESC   77 (90)
T ss_dssp             CGGGTSGGGCCCSSSHHHHHHHHHHHCCGGGSCTTTGGG--TT-----TCCGGGTCCTTTSBTTCCCCSTTT
T ss_pred             CCCCcCCCCccccCCCCCCCcCcccCCCceeEeeccccc--cC-----ccccccCccccCCCCcCCCccccc
Confidence            69999998853         4999999997643221111  10     1233456666666653   56655