Citrus Sinensis ID: 022592

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290----
Protein Sequence
MKEGESRKRKRRRRHNSNSKPQDQESYQSKSTAKTTAKKHKQDTVKNNEQQYEHHQTSAAASAKRPKPSSFLDKMRARLSGGHFRMLNEKLYTCTGKEALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVKNKVFSFDLVSNDPSVIACDMSNTPLNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSKDFSNKMFIMFYFKKKEKQNSKSKEIQWPELKPCLYKRR
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHcccccccccHHHHHHHccccHHHcccccccccccHHHHHccccccccccccccccHHHHHHHHHHccccHHHHHHHcccccHHHHHHHHHHccHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccccEEEEEcccHHHHHHHcccEEEEEEccccccccccccccccccccccEEEEEEEHHcccccHHHHHHHHHHHccccccEEEEEEEcccccccccccHHHHHHHHHHccccEEEEEccccEEEEEEEEEcccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHcccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcHcHHHHHHHHHccccHHHHHHHHHHcHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccEEEEEccccHHHHHHHccccEEEEEcccccccEEEEEccccccccccccEEEEEHHHccccHHHHHHHHHHHHccccEEEEEEEEEccccccccccHHHHHHHHHHcccEEEEEcccccEEEEEEEEEccccccccccccccccccEEEccc
Coil and Loop (DISEMBL)
mkegesrkrkrrrrhnsnskpqdqesyqskSTAKTTAKKHKQDTVKNNEQQYEHHQtsaaasakrpkpssfLDKMRARLsgghfrmlneklytCTGKEALdyfnenpalfdmYHSGYqeqmshwpelpVNIIVKWLkdhspslviadfgcgdarLAKSVKNKVFsfdlvsndpsviacdmsntplnsssVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVksrfdpntggadpnkfSKAVCdlgfapvskdfsnKMFIMFYFKKkekqnskskeiqwpelkpclykrr
Flexible Loop (DISEMBL)
mkegesrkrkrrrrhnsnskpqdqesyqskstakttakkHKQDTVKNNEQQYEHhqtsaaasakrpkpssFLDKMRARLsgghfrmlNEKLYTCTGKEALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVKNKVFSFDLVSNDPSVIACDMSNTPLNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSKDFSNKMFIMFYFKkkekqnskskeiqwpelkpclykrr
Low Complexity Region (SEG)
MKEGESrkrkrrrrHNSNSKPQDQESYQskstakttakkHKQDTVKNNEQQYEHHQTsaaasakrpkpssFLDKMRARLSGGHFRMLNEKLYTCTGKEALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVKNKVFSFDLVSNDPSVIACDMSNTPLNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSKDFSNKMFIMFYFkkkekqnskskeIQWPELKPCLYKRR
Disordered region (IsUnstruct)
*******************************************************************************SGGHFRMLNEKLYTCTGKEALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVKNKVFSFDLVSNDPSVIAC**************AVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFD********NKFSKAVCDLGFAPVSKDFSNKMFIMFYFK*************************
Disordered Region (DISOPRED)
*******************************************************************************SGGHFRMLNEKLYTCTGKEALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVKNKVFSFDLVSNDPSVIACDMSNTPLNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSKDFSNKMFIMFYFK***************ELKPCLYKRR
Disordered Region (DISEMBL)
*********************************************************************SFLDKMRARLSGGHFRMLNEKLYTCTGKEALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVKNKVFSFDLVSNDPSVIACDMSNTPLNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSKDFSNKMFIMFYFKK*********EIQWPELKPCLYKRR
Disordered Region (DISPRO)
*******************************************************************PSSFLDKMRARLSGGHFRMLNEKLYTCTGKEALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVKNKVFSFDLVSNDPSVIACDMSNTPLNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSKDFSNKMFIMFYFKKKEKQNSKSKEIQWPELKPCLYKR*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKEGESRKRKRRRRHNSNSKPQDQESYQSKSTAKTTAKKHKQDTVKNNEQQYEHHQTSAAASAKRPKPSSFLDKMRARLSGGHFRMLNEKLYTCTGKEALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVKNKVFSFDLVSNDPSVIACDMSNTPLNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSKDFSNKMFIMFYFKKKEKQNSKSKEIQWPELKPCLYKRR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	294	2.2.26 [Sep-21-2011]
Q84JC0	287	Ribosomal RNA-processing	yes	no	0.908	0.930	0.701	1e-109
O43159	456	Ribosomal RNA-processing	yes	no	0.731	0.471	0.495	4e-56
Q9DB85	457	Ribosomal RNA-processing	no	no	0.731	0.470	0.490	1e-54
Q5U4F0	457	Ribosomal RNA-processing	yes	no	0.731	0.470	0.486	2e-54
Q10257	318	Ribosomal RNA-processing	yes	no	0.775	0.716	0.439	8e-52
O44410	343	Ribosomal RNA-processing	yes	no	0.761	0.653	0.427	2e-50
A8XI07	332	Ribosomal RNA-processing	N/A	no	0.717	0.635	0.429	9e-49
Q54CP1	390	Ribosomal RNA-processing	yes	no	0.755	0.569	0.407	2e-47
Q7K2B0	358	Ribosomal RNA-processing	yes	no	0.775	0.636	0.404	4e-45
P38961	392	Ribosomal RNA-processing	yes	no	0.965	0.724	0.318	9e-41

>sp|Q84JC0|RRP8_ARATH Ribosomal RNA-processing protein 8 OS=Arabidopsis thaliana GN=At5g40530 PE=2 SV=1

 Score =  396 bits (1017), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 193/275 (70%), Positives = 221/275 (80%), Gaps = 8/275 (2%)

Query: 20  KPQDQESYQSKSTAKTTAKKHKQDTVKNNEQQYEHHQTSAAASAKRPKPSSFLDKMRARL 79
           KP  +E  ++  T K   +K  Q   KN     + H  S+A S KRPKPS+FLD +R RL
Sbjct: 21  KPSKEEPIET--TPKNQNEKKNQRDTKN-----QQHGGSSAPS-KRPKPSNFLDALRERL 72

Query: 80  SGGHFRMLNEKLYTCTGKEALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIVKWLKDH 139
           SGG FRMLNEKLYTC+GKEALDYF E+P +FDMYH+GYQ+QMS+WPELPVN I+ WL  +
Sbjct: 73  SGGQFRMLNEKLYTCSGKEALDYFKEDPQMFDMYHTGYQQQMSNWPELPVNSIINWLLSN 132

Query: 140 SPSLVIADFGCGDARLAKSVKNKVFSFDLVSNDPSVIACDMSNTPLNSSSVDVAVFCLSL 199
           S SLV+ADFGCGDAR+AKSVKNKVFSFDLVS +PSVIACDMSNT L SSSVDVAVFCLSL
Sbjct: 133 SSSLVVADFGCGDARIAKSVKNKVFSFDLVSKNPSVIACDMSNTSLESSSVDVAVFCLSL 192

Query: 200 MGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSKDFS 259
           MG N+ +Y++EA RVL+PSG LLIAEVKSRFDPN GGADP  F KAVCDLGF  V KDFS
Sbjct: 193 MGTNYSSYIKEAHRVLRPSGMLLIAEVKSRFDPNNGGADPKDFVKAVCDLGFTSVLKDFS 252

Query: 260 NKMFIMFYFKKKEKQNSKSKEIQWPELKPCLYKRR 294
           NKMFI+F+FKKKE+ NS  K I+WPELK CLYKRR
Sbjct: 253 NKMFILFHFKKKEQMNSNQKIIKWPELKACLYKRR 287

Probable methyltransferase required to silence rDNA.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: -

>sp|O43159|RRP8_HUMAN Ribosomal RNA-processing protein 8 OS=Homo sapiens GN=RRP8 PE=1 SV=2

 Score =  218 bits (555), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 110/222 (49%), Positives = 137/222 (61%), Gaps = 7/222 (3%)

Query: 74  KMRARLSGGHFRMLNEKLYTCTGKEALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIV 133
           +M  RL G  FR LNE+LY+     A   F E+P  F +YH G+Q Q+  WP  PV+ I 
Sbjct: 241 RMAQRLDGARFRYLNEQLYSGPSSAAQRLFQEDPEAFLLYHRGFQSQVKKWPLQPVDRIA 300

Query: 134 KWLKDHSPSLVIADFGCGDARLAKSVKNKVFSFDLVSNDPSVIACDMSNTPLNSSSVDVA 193
           + L+    SLV+ADFGCGD RLA S++N V  FDL S DP V  CDM+  PL   SVDVA
Sbjct: 301 RDLRQRPASLVVADFGCGDCRLASSIRNPVHCFDLASLDPRVTVCDMAQVPLEDESVDVA 360

Query: 194 VFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAP 253
           VFCLSLMG N  ++L+EA RVLKP G L +AEV SRF+      D   F +AV  LGF  
Sbjct: 361 VFCLSLMGTNIRDFLEEANRVLKPGGLLKVAEVSSRFE------DVRTFLRAVTKLGFKI 414

Query: 254 VSKDFSNKMFIMFYFKKKEKQNSKSK-EIQWPELKPCLYKRR 294
           VSKD +N  F +F F+K        K ++   +L+PCLYKRR
Sbjct: 415 VSKDLTNSHFFLFDFQKTGPPLVGPKAQLSGLQLQPCLYKRR 456

Essential component of the eNoSC (energy-dependent nucleolar silencing) complex, a complex that mediates silencing of rDNA in response to intracellular energy status and acts by recruiting histone-modifying enzymes. The eNoSC complex is able to sense the energy status of cell: upon glucose starvation, elevation of NAD(+)/NADP(+) ratio activates SIRT1, leading to histone H3 deacetylation followed by dimethylation of H3 at 'Lys-9' (H3K9me2) by SUV39H1 and the formation of silent chromatin in the rDNA locus. In the complex, RRP8 binds to H3K9me2 and probably acts as a methyltransferase. Its substrates are however unknown.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9DB85|RRP8_MOUSE Ribosomal RNA-processing protein 8 OS=Mus musculus GN=Rrp8 PE=1 SV=1

 Score =  213 bits (542), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 109/222 (49%), Positives = 134/222 (60%), Gaps = 7/222 (3%)

Query: 74  KMRARLSGGHFRMLNEKLYTCTGKEALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIV 133
           +M  RL G  FR LNE+LY+     A   F E+P  F +YH G+Q Q+  WP  PV+ I 
Sbjct: 242 RMTQRLDGARFRYLNEQLYSGPSSAARRLFQEDPEAFLLYHRGFQRQVKKWPLHPVDRIA 301

Query: 134 KWLKDHSPSLVIADFGCGDARLAKSVKNKVFSFDLVSNDPSVIACDMSNTPLNSSSVDVA 193
           K L+    SLV+ADFGCGD RLA SV+N V  FDL S DP V  CDM+  PL   SVDVA
Sbjct: 302 KDLRQKPASLVVADFGCGDCRLASSVRNPVHCFDLASLDPRVTVCDMAQVPLEDESVDVA 361

Query: 194 VFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAP 253
           VFCLSLMG N  ++L+EA RVLK  G L +AEV SRF+      D   F  AV  LGF  
Sbjct: 362 VFCLSLMGTNIRDFLEEANRVLKTGGLLKVAEVSSRFE------DIRTFLGAVTKLGFKI 415

Query: 254 VSKDFSNKMFIMFYFKKKEKQNSKSK-EIQWPELKPCLYKRR 294
           + KD +N  F +F F+K        K ++   +L+PCLYKRR
Sbjct: 416 IYKDLTNSHFFLFDFEKTGPPRVGPKAQLSGLKLQPCLYKRR 457

Essential component of the eNoSC (energy-dependent nucleolar silencing) complex, a complex that mediates silencing of rDNA in response to intracellular energy status and acts by recruiting histone-modifying enzymes. The eNoSC complex is able to sense the energy status of cell: upon glucose starvation, elevation of NAD(+)/NADP(+) ratio activates SIRT1, leading to histone H3 deacetylation followed by dimethylation of H3 at 'Lys-9' (H3K9me2) by SUV39H1 and the formation of silent chromatin in the rDNA locus. In the complex, RRP8 binds to H3K9me2 and probably acts as a methyltransferase. Its substrates are however unknown.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q5U4F0|RRP8_RAT Ribosomal RNA-processing protein 8 OS=Rattus norvegicus GN=Rrp8 PE=2 SV=1

 Score =  213 bits (541), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 108/222 (48%), Positives = 134/222 (60%), Gaps = 7/222 (3%)

Query: 74  KMRARLSGGHFRMLNEKLYTCTGKEALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIV 133
           +M  RL G  FR LNE+LY+     A   F E+P  F +YH G+Q Q+  WP  PV+ I 
Sbjct: 242 RMTQRLDGARFRYLNEQLYSGPSSAAQCLFQEDPEAFLLYHRGFQRQVKKWPLHPVDRIA 301

Query: 134 KWLKDHSPSLVIADFGCGDARLAKSVKNKVFSFDLVSNDPSVIACDMSNTPLNSSSVDVA 193
           K L+    SLV+ADFGCGD RLA SV+N V  FDL + DP V  CDM+  PL   SVDVA
Sbjct: 302 KDLRQKPASLVVADFGCGDCRLASSVRNPVHCFDLAALDPRVTVCDMAQVPLEDESVDVA 361

Query: 194 VFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAP 253
           VFCLSLMG N  ++L+EA RVLKP G L +AEV SRF+      D   F  AV  LGF  
Sbjct: 362 VFCLSLMGTNIRDFLEEANRVLKPGGLLKVAEVSSRFE------DIRTFLGAVTKLGFKV 415

Query: 254 VSKDFSNKMFIMFYFKKKEKQNSKSK-EIQWPELKPCLYKRR 294
           + KD +N  F +F F+K        K ++   +L+PCLYK R
Sbjct: 416 IYKDLTNSHFFLFDFEKTGPPRVGPKAQLSGLKLQPCLYKHR 457

Essential component of the eNoSC (energy-dependent nucleolar silencing) complex, a complex that mediates silencing of rDNA in response to intracellular energy status and acts by recruiting histone-modifying enzymes. The eNoSC complex is able to sense the energy status of cell: upon glucose starvation, elevation of NAD(+)/NADP(+) ratio activates SIRT1, leading to histone H3 deacetylation followed by dimethylation of H3 at 'Lys-9' (H3K9me2) by SUV39H1 and the formation of silent chromatin in the rDNA locus. In the complex, RRP8 binds to H3K9me2 and probably acts as a methyltransferase. Its substrates are however unknown.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q10257|RRP8_SCHPO Ribosomal RNA-processing protein 8 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rrp8 PE=3 SV=1

 Score =  204 bits (518), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 108/246 (43%), Positives = 156/246 (63%), Gaps = 18/246 (7%)

Query: 61  ASAKRPKPSSFLDKMRARLSGGHFRMLNEKLYTCTGKEALDYFNENPALFDMYHSGYQEQ 120
             AK  K +S   KM+ +L G +FR +NE+LYT    +A+  F ENP LFD+YH+G++ Q
Sbjct: 79  GDAKHTKLTSLQQKMKDKLDGANFRWINEQLYTTESDKAVQMFKENPDLFDIYHAGFRYQ 138

Query: 121 MSHWPELPVNIIVKWLK---DHSPS-----LVIADFGCGDARLAKSVKN----KVFSFDL 168
           +  WPE PV+I ++ LK   +HS +     +VIAD GCG+A++A + +     +V SFDL
Sbjct: 139 VEGWPENPVDIFIQHLKIRFEHSNAKKKNNIVIADLGCGEAKIASTFRKSRSLQVHSFDL 198

Query: 169 VSNDPSVIACDMSNTPLNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVKS 228
           V+ +  V+ACD++N P+   +VD+AVFCLSLMG N+ ++L+EA R+LK  G L +AE+KS
Sbjct: 199 VAPNEHVVACDIANVPMADETVDIAVFCLSLMGTNWQSFLKEAYRILKVGGLLWVAEIKS 258

Query: 229 RFDPNTGGADPNKFSKAVCDLGFAPVSKDFSNKMFIMFYFKKKEKQNSKSKEIQWPELKP 288
           RF   +G      F+K +  LGF   S    NKMF +F FKK    + K +E+  P L  
Sbjct: 259 RFSDKSGEV----FAKELPKLGFETKSIQLQNKMFTLFEFKKVP-VHGKCEELP-PILSA 312

Query: 289 CLYKRR 294
           C+YKRR
Sbjct: 313 CIYKRR 318

Probable methyltransferase involved in rRNA processing. Required for efficient pre-rRNA cleavage at site A2.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|O44410|RRP8_CAEEL Ribosomal RNA-processing protein 8 OS=Caenorhabditis elegans GN=T07A9.8 PE=3 SV=1

 Score =  199 bits (506), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 100/234 (42%), Positives = 143/234 (61%), Gaps = 10/234 (4%)

Query: 63  AKRPKPSSFLDKMRARLSGGHFRMLNEKLYTCTGKEALDYFNENPALFDMYHSGYQEQMS 122
           A  P+ +  + + + RL  G FR LNEKLYTCTG EA D+F E+P  FD+YH G+ +Q+ 
Sbjct: 118 AAAPEEADPIAEAKKRLDAGRFRFLNEKLYTCTGSEAFDFFKEDPTAFDLYHKGFADQVK 177

Query: 123 HWPELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSV--KNKVFSFDLVSNDPSVIACDM 180
            WP  P+  I++WL+       + D GCG+A++A++V  K+K+ SFDLV+ +  V +CDM
Sbjct: 178 KWPNHPLREIIRWLQSKPDQQSVFDLGCGEAKIAEAVGEKHKIRSFDLVAVNDRVESCDM 237

Query: 181 SNTPLNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPN 240
           S  P   SS D+ ++CLSLMG N  ++++EA+RVLK  G L IAEV SRF          
Sbjct: 238 SKLPAEDSSADIVIYCLSLMGTNLYDFIREARRVLKIGGILKIAEVTSRF------VSIK 291

Query: 241 KFSKAVCDLGFAPVSKDFSNKMFIMFYFKKKEKQNSKSKEIQWPELKPCLYKRR 294
           +F +A+  +GF    +      F+M  FKK EK   + K     +LKPCLYK+R
Sbjct: 292 QFCEAITKMGFEQSHRRELTDYFMMMEFKKVEK--VEQKRPYGLKLKPCLYKKR 343

Probable methyltransferase required to silence rDNA.

Caenorhabditis elegans (taxid: 6239)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|A8XI07|RRP8_CAEBR Ribosomal RNA-processing protein 8 OS=Caenorhabditis briggsae GN=CBG13492 PE=3 SV=1

 Score =  194 bits (492), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 95/221 (42%), Positives = 136/221 (61%), Gaps = 10/221 (4%)

Query: 76  RARLSGGHFRMLNEKLYTCTGKEALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIVKW 135
           + RL  G FRMLNEKLYTCTG EA D+F E+   FD+YH G+ +Q+  WP  P+  I++W
Sbjct: 120 KKRLDAGRFRMLNEKLYTCTGSEAFDFFKEDRTAFDLYHRGFADQVKKWPNHPLREIIRW 179

Query: 136 LKDHSPSLVIADFGCGDARLAKSV--KNKVFSFDLVSNDPSVIACDMSNTPLNSSSVDVA 193
           L+       + D GCG+A++A++V  K+ + SFDLV+ +  V +CDMS  P    S DV 
Sbjct: 180 LQAKPDKQAVFDLGCGEAKIAEAVGEKHTIRSFDLVAVNDRVESCDMSKLPAEDGSADVV 239

Query: 194 VFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAP 253
           +FCLSLMG N  ++++EA+RVL+  G L I EV SRF          +F +A+  +GF  
Sbjct: 240 IFCLSLMGTNLYDFIKEARRVLRTGGVLKIGEVTSRF------VSIKQFCEAINKMGFET 293

Query: 254 VSKDFSNKMFIMFYFKKKEKQNSKSKEIQWPELKPCLYKRR 294
            ++      F+MF F+K +K   + K     +LKPCLYK+R
Sbjct: 294 TNRRQLTDYFMMFDFRKIDK--VEQKRPYGLKLKPCLYKKR 332

Probable methyltransferase required to silence rDNA.

Caenorhabditis briggsae (taxid: 6238)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q54CP1|RRP8_DICDI Ribosomal RNA-processing protein 8 OS=Dictyostelium discoideum GN=rrp8 PE=3 SV=1

 Score =  189 bits (480), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 99/243 (40%), Positives = 144/243 (59%), Gaps = 21/243 (8%)

Query: 67  KPSSFLDKMRARLSGGHFRMLNEKLYTCTGKEALDYFNENPALFDMYHSGYQEQMSHWPE 126
           K +   ++M  +L G  FR LNE LYT   KEA   F+E+ +LFD YHSG++ Q+  WP 
Sbjct: 154 KTTDLQNEMSEKLKGSRFRWLNETLYTTHSKEAFKEFSEDRSLFDQYHSGFKSQVESWPI 213

Query: 127 LPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVKNK--VFSFDLVSNDPSVIACDMSNTP 184
            P+++I+  L        IAD GCG+A+LA+ +++K  + SFDLV+ +  V ACD+SN P
Sbjct: 214 NPLDLIIDDLSSIKQRKRIADLGCGEAKLAERLQHKHTIQSFDLVAVNERVTACDISNLP 273

Query: 185 LNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSK 244
           L + S+D+AVFCLSLMG NF +++ EA+RVL   G L IAE++SR        D N F+ 
Sbjct: 274 LKNESIDIAVFCLSLMGTNFIDFIIEAERVLVKGGLLKIAEIESRI------TDINAFTN 327

Query: 245 AVCDLGFAPVSKDFSNKMFIMFYFKKKEKQNSK-------------SKEIQWPELKPCLY 291
            +   GF  + K+  N+ F +F F K +K++ +              +    P LKPCLY
Sbjct: 328 EIQQHGFNLIKKNEQNQYFTLFEFSKLQKKDQQFMRSLKQYQKLKKQQATNEPVLKPCLY 387

Query: 292 KRR 294
           K+R
Sbjct: 388 KKR 390

Probable methyltransferase required to silence rDNA.

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q7K2B0|RRP8_DROME Ribosomal RNA-processing protein 8 OS=Drosophila melanogaster GN=CG7137 PE=1 SV=1

 Score =  181 bits (460), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 95/235 (40%), Positives = 148/235 (62%), Gaps = 7/235 (2%)

Query: 60  AASAKRPKPSSFLDKMRARLSGGHFRMLNEKLYTCTGKEALDYFNENPALFDMYHSGYQE 119
           A S+  P  +S   K+++ L GG FR +NE+LY+ T ++A   F ++ + F+ YH+GY++
Sbjct: 131 ATSSTTPAANSLASKLQSELLGGRFRYINEQLYSTTSRKAEALFRKDSSAFEAYHAGYRQ 190

Query: 120 QMSHWPELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVKNKVFSFDLVSNDPSVIACD 179
           Q+  WP  P+N I+K +K    + +I DFGCG+ +LA+SV NKV+S DLV+    +IAC+
Sbjct: 191 QVEKWPINPLNRIIKTIKKIPKTAIIGDFGCGEGKLAQSVPNKVYSMDLVAARSDIIACN 250

Query: 180 MSNTPLNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADP 239
           +++TPL + ++DVAV+CLSLMG +   +  EA RVLK  G + IAE++SRF       D 
Sbjct: 251 ITDTPLQARTLDVAVYCLSLMGTDLNEFFLEANRVLKLHGTVYIAEIQSRFQ------DV 304

Query: 240 NKFSKAVCDLGFAPVSKDFSNKMFIMFYFKKKEKQNSKSKEIQWPELKPCLYKRR 294
            +F + +   GF    KD +   F  F FKK  +   K+ +++   LKPCLY++R
Sbjct: 305 REFVRCLNACGFDLNKKDVAVNYFYFFQFKKM-RHVPKNTKMKAFSLKPCLYRKR 358

Probable methyltransferase required to silence rDNA.

Drosophila melanogaster (taxid: 7227)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|P38961|RRP8_YEAST Ribosomal RNA-processing protein 8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RRP8 PE=1 SV=2

 Score =  167 bits (423), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 114/358 (31%), Positives = 166/358 (46%), Gaps = 74/358 (20%)

Query: 6   SRKRKRRRRHNSNSKPQDQESYQSKSTAKTTAKKHKQDTVKNNEQQYEHHQTSAAASAKR 65
           +R++K +    +  K Q ++     S AK   KK+++ + +N   +   H   A     +
Sbjct: 40  TREQKLKEETEAELKEQVEDIPSEGSVAKDIPKKNQEKSDQNETSKKRKHDEEAPLMQVK 99

Query: 66  P---KPSS-----FLDKMRARLSGGHFRMLNEKLYTCTGKEALDYFNENPALFDMYHSGY 117
               KP+         KM A+L+G  FR +NE+LYT +  EAL    E P LFD YH G+
Sbjct: 100 ENIEKPTKKQLTPLQQKMMAKLTGSRFRWINEQLYTISSDEALKLIKEQPQLFDEYHDGF 159

Query: 118 QEQMSHWPELPVNIIVKWLK----------------DHSPSLVIADFGCGDARLAKSVKN 161
           + Q+  WPE PV++ V  ++                  S  +VIAD GCG+A+LA  + N
Sbjct: 160 RSQVQAWPENPVDVFVDQIRYRCMKPVNAPGGLPGLKDSKEIVIADMGCGEAQLALEINN 219

Query: 162 -----------------KVFSFDLVSNDPSVIACDMSNTPLNSSSVDVAVFCLSLMGINF 204
                            KV SFDL   +  +   D+ N PL   S  + VFCL+LMG NF
Sbjct: 220 FFKNYNKKAKKYLKRRHKVHSFDLKKANERITVADIRNVPLPDESCTIVVFCLALMGTNF 279

Query: 205 PNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSKDFSNKMFI 264
            ++++EA R+L P G L IAE+KSRF    G    N+F  A+  +GF        NKMF 
Sbjct: 280 LDFIKEAYRILAPRGELWIAEIKSRFSDGKG----NEFVDALKLMGFFHKKTFDENKMFT 335

Query: 265 MFYF---------KKKEKQNSKSKEI-------------------QWPELKPCLYKRR 294
            F F         ++++K   + K I                   +W  LKPC+YKRR
Sbjct: 336 RFEFFKPPAEIIEERRQKLERRQKFIEVETEKEELEKKRRKIAEGKWL-LKPCIYKRR 392

Probable methyltransferase involved in rRNA processing. Required for efficient pre-rRNA cleavage at site A2. Also involved in telomere length regulation and maintenance.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	294
225452314	263	PREDICTED: ribosomal RNA-processing prot	0.863	0.965	0.771	1e-116
147767094	237	hypothetical protein VITISV_009442 [Viti	0.765	0.949	0.84	1e-113
296087596	220	unnamed protein product [Vitis vinifera]	0.748	1.0	0.836	1e-110
449450068	283	PREDICTED: ribosomal RNA-processing prot	0.768	0.798	0.778	1e-108
449522642	283	PREDICTED: ribosomal RNA-processing prot	0.768	0.798	0.778	1e-108
30693618	287	ribosomal RNA-processing protein 8 [Arab	0.908	0.930	0.701	1e-108
224055577	220	predicted protein [Populus trichocarpa]	0.748	1.0	0.813	1e-108
356558835	262	PREDICTED: ribosomal RNA-processing prot	0.846	0.950	0.734	1e-107
357451211	253	Ribosomal RNA-processing protein [Medica	0.789	0.916	0.762	1e-107
297805624	295	hypothetical protein ARALYDRAFT_330455 [	0.965	0.962	0.64	1e-106

>gi|225452314|ref|XP_002272751.1| PREDICTED: ribosomal RNA-processing protein 8 [Vitis vinifera]

 Score =  423 bits (1087), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 196/254 (77%), Positives = 217/254 (85%)

Query: 41  KQDTVKNNEQQYEHHQTSAAASAKRPKPSSFLDKMRARLSGGHFRMLNEKLYTCTGKEAL 100
           K+ T +N E Q +  +       K    SSFLDKMRARLSGGHFRM+NEKLYTCTG EAL
Sbjct: 10  KRRTPQNGESQTKKKRKHEKVDGKSKSSSSFLDKMRARLSGGHFRMINEKLYTCTGSEAL 69

Query: 101 DYFNENPALFDMYHSGYQEQMSHWPELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK 160
            YF E+PALF++YH GYQEQMSHWP+ PVNII+KWLKDHSPSL++ADFGCGDARLA++VK
Sbjct: 70  SYFEEDPALFNVYHVGYQEQMSHWPQQPVNIIIKWLKDHSPSLIVADFGCGDARLARNVK 129

Query: 161 NKVFSFDLVSNDPSVIACDMSNTPLNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGW 220
           NKVFSFDLVS+DPSVI CDMSNTPL SSS+DVAVFCLSLMG NF +YLQEA RVLKP GW
Sbjct: 130 NKVFSFDLVSSDPSVIVCDMSNTPLESSSIDVAVFCLSLMGTNFSSYLQEAHRVLKPCGW 189

Query: 221 LLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSKDFSNKMFIMFYFKKKEKQNSKSKE 280
           LLIAEVKSRFDP+ GGADPN+FSKA+C LGF   SKDFSNKMFI+ YFKKKEKQNSK KE
Sbjct: 190 LLIAEVKSRFDPSNGGADPNRFSKAICKLGFTLESKDFSNKMFILLYFKKKEKQNSKVKE 249

Query: 281 IQWPELKPCLYKRR 294
           I WPELKPCLYKRR
Sbjct: 250 IDWPELKPCLYKRR 263

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147767094|emb|CAN65396.1| hypothetical protein VITISV_009442 [Vitis vinifera]

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 189/225 (84%), Positives = 207/225 (92%)

Query: 70  SFLDKMRARLSGGHFRMLNEKLYTCTGKEALDYFNENPALFDMYHSGYQEQMSHWPELPV 129
           SFLDKMRARLSGGHFRM+NEKLYTCTG EAL YF E+PALF++YH+GYQEQMSHWP+ PV
Sbjct: 13  SFLDKMRARLSGGHFRMINEKLYTCTGSEALSYFEEDPALFNVYHAGYQEQMSHWPQQPV 72

Query: 130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVKNKVFSFDLVSNDPSVIACDMSNTPLNSSS 189
           NII+KWLKDHSPSL++ADFGCGDARLA++VKNKVFSFDLVS+DPSVI CDMSNTPL SSS
Sbjct: 73  NIIIKWLKDHSPSLIVADFGCGDARLARNVKNKVFSFDLVSSDPSVIVCDMSNTPLESSS 132

Query: 190 VDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDL 249
           +DVAVFCLSLMG NF +YLQEA RVLKP GWLLIAEVKSRFDP+ GGADPN+FSKA+C L
Sbjct: 133 IDVAVFCLSLMGTNFSSYLQEAHRVLKPCGWLLIAEVKSRFDPSNGGADPNRFSKAICKL 192

Query: 250 GFAPVSKDFSNKMFIMFYFKKKEKQNSKSKEIQWPELKPCLYKRR 294
           GF   SKDFSNKMFI+ YFKKKEKQNSK KEI WPELKPCLYKRR
Sbjct: 193 GFTLESKDFSNKMFILLYFKKKEKQNSKVKEIDWPELKPCLYKRR 237

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087596|emb|CBI34852.3| unnamed protein product [Vitis vinifera]

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 184/220 (83%), Positives = 201/220 (91%)

Query: 75  MRARLSGGHFRMLNEKLYTCTGKEALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIVK 134
           MRARLSGGHFRM+NEKLYTCTG EAL YF E+PALF++YH GYQEQMSHWP+ PVNII+K
Sbjct: 1   MRARLSGGHFRMINEKLYTCTGSEALSYFEEDPALFNVYHVGYQEQMSHWPQQPVNIIIK 60

Query: 135 WLKDHSPSLVIADFGCGDARLAKSVKNKVFSFDLVSNDPSVIACDMSNTPLNSSSVDVAV 194
           WLKDHSPSL++ADFGCGDARLA++VKNKVFSFDLVS+DPSVI CDMSNTPL SSS+DVAV
Sbjct: 61  WLKDHSPSLIVADFGCGDARLARNVKNKVFSFDLVSSDPSVIVCDMSNTPLESSSIDVAV 120

Query: 195 FCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPV 254
           FCLSLMG NF +YLQEA RVLKP GWLLIAEVKSRFDP+ GGADPN+FSKA+C LGF   
Sbjct: 121 FCLSLMGTNFSSYLQEAHRVLKPCGWLLIAEVKSRFDPSNGGADPNRFSKAICKLGFTLE 180

Query: 255 SKDFSNKMFIMFYFKKKEKQNSKSKEIQWPELKPCLYKRR 294
           SKDFSNKMFI+ YFKKKEKQNSK KEI WPELKPCLYKRR
Sbjct: 181 SKDFSNKMFILLYFKKKEKQNSKVKEIDWPELKPCLYKRR 220

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450068|ref|XP_004142786.1| PREDICTED: ribosomal RNA-processing protein 8-like [Cucumis sativus]

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 176/226 (77%), Positives = 206/226 (91%)

Query: 69  SSFLDKMRARLSGGHFRMLNEKLYTCTGKEALDYFNENPALFDMYHSGYQEQMSHWPELP 128
           SSFLDKMRARLSGGHFRMLNEKLYTCTG+EAL+YF E+  LFD+YH+GYQEQM+HWPELP
Sbjct: 58  SSFLDKMRARLSGGHFRMLNEKLYTCTGEEALNYFKEDKVLFDVYHTGYQEQMTHWPELP 117

Query: 129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVKNKVFSFDLVSNDPSVIACDMSNTPLNSS 188
           VN+I+KWLK+H PS ++ADFGCGDARL+K+VKNKVFSFDLVS DPSVIACDMSNTPL+S+
Sbjct: 118 VNLIIKWLKEHDPSFIVADFGCGDARLSKNVKNKVFSFDLVSKDPSVIACDMSNTPLDSA 177

Query: 189 SVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCD 248
           SVDVAVFCLSLMG+N+ +YL EA+RVLKP GWLLI+EVKSRFDP+ GGADP KF KAVC+
Sbjct: 178 SVDVAVFCLSLMGVNYASYLAEARRVLKPRGWLLISEVKSRFDPSNGGADPKKFIKAVCE 237

Query: 249 LGFAPVSKDFSNKMFIMFYFKKKEKQNSKSKEIQWPELKPCLYKRR 294
           LGF    KDFSNKMFI+ YFKKK+++ S+ K+I WP+LKPC+YKRR
Sbjct: 238 LGFVSALKDFSNKMFILLYFKKKDEKTSEGKDIDWPQLKPCMYKRR 283

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449522642|ref|XP_004168335.1| PREDICTED: ribosomal RNA-processing protein 8-like [Cucumis sativus]

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 176/226 (77%), Positives = 206/226 (91%)

Query: 69  SSFLDKMRARLSGGHFRMLNEKLYTCTGKEALDYFNENPALFDMYHSGYQEQMSHWPELP 128
           SSFLDKMRARLSGGHFRMLNEKLYTCTG+EAL+YF E+  LFD+YH+GYQEQM+HWPELP
Sbjct: 58  SSFLDKMRARLSGGHFRMLNEKLYTCTGEEALNYFKEDKVLFDVYHTGYQEQMTHWPELP 117

Query: 129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVKNKVFSFDLVSNDPSVIACDMSNTPLNSS 188
           VN+I+KWLK+H PS ++ADFGCGDARL+K+VKNKVFSFDLVS DPSVIACDMSNTPL+S+
Sbjct: 118 VNLIIKWLKEHDPSFIVADFGCGDARLSKNVKNKVFSFDLVSKDPSVIACDMSNTPLDSA 177

Query: 189 SVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCD 248
           SVDVAVFCLSLMG+N+ +YL EA+RVLKP GWLLI+EVKSRFDP+ GGADP KF KAVC+
Sbjct: 178 SVDVAVFCLSLMGVNYASYLAEARRVLKPRGWLLISEVKSRFDPSNGGADPKKFIKAVCE 237

Query: 249 LGFAPVSKDFSNKMFIMFYFKKKEKQNSKSKEIQWPELKPCLYKRR 294
           LGF    KDFSNKMFI+ YFKKK+++ S+ K+I WP+LKPC+YKRR
Sbjct: 238 LGFVSALKDFSNKMFILLYFKKKDEKTSEGKDIDWPQLKPCMYKRR 283

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30693618|ref|NP_198869.2| ribosomal RNA-processing protein 8 [Arabidopsis thaliana] gi|75146626|sp|Q84JC0.1|RRP8_ARATH RecName: Full=Ribosomal RNA-processing protein 8 gi|27754615|gb|AAO22753.1| unknown protein [Arabidopsis thaliana] gi|28394063|gb|AAO42439.1| unknown protein [Arabidopsis thaliana] gi|332007177|gb|AED94560.1| ribosomal RNA-processing protein 8 [Arabidopsis thaliana]

 Score =  396 bits (1017), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 193/275 (70%), Positives = 221/275 (80%), Gaps = 8/275 (2%)

Query: 20  KPQDQESYQSKSTAKTTAKKHKQDTVKNNEQQYEHHQTSAAASAKRPKPSSFLDKMRARL 79
           KP  +E  ++  T K   +K  Q   KN     + H  S+A S KRPKPS+FLD +R RL
Sbjct: 21  KPSKEEPIET--TPKNQNEKKNQRDTKN-----QQHGGSSAPS-KRPKPSNFLDALRERL 72

Query: 80  SGGHFRMLNEKLYTCTGKEALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIVKWLKDH 139
           SGG FRMLNEKLYTC+GKEALDYF E+P +FDMYH+GYQ+QMS+WPELPVN I+ WL  +
Sbjct: 73  SGGQFRMLNEKLYTCSGKEALDYFKEDPQMFDMYHTGYQQQMSNWPELPVNSIINWLLSN 132

Query: 140 SPSLVIADFGCGDARLAKSVKNKVFSFDLVSNDPSVIACDMSNTPLNSSSVDVAVFCLSL 199
           S SLV+ADFGCGDAR+AKSVKNKVFSFDLVS +PSVIACDMSNT L SSSVDVAVFCLSL
Sbjct: 133 SSSLVVADFGCGDARIAKSVKNKVFSFDLVSKNPSVIACDMSNTSLESSSVDVAVFCLSL 192

Query: 200 MGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSKDFS 259
           MG N+ +Y++EA RVL+PSG LLIAEVKSRFDPN GGADP  F KAVCDLGF  V KDFS
Sbjct: 193 MGTNYSSYIKEAHRVLRPSGMLLIAEVKSRFDPNNGGADPKDFVKAVCDLGFTSVLKDFS 252

Query: 260 NKMFIMFYFKKKEKQNSKSKEIQWPELKPCLYKRR 294
           NKMFI+F+FKKKE+ NS  K I+WPELK CLYKRR
Sbjct: 253 NKMFILFHFKKKEQMNSNQKIIKWPELKACLYKRR 287

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224055577|ref|XP_002298548.1| predicted protein [Populus trichocarpa] gi|222845806|gb|EEE83353.1| predicted protein [Populus trichocarpa]

 Score =  396 bits (1017), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 179/220 (81%), Positives = 199/220 (90%)

Query: 75  MRARLSGGHFRMLNEKLYTCTGKEALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIVK 134
           MRARLSGGHFRM+NEKLYTCTG EALDYF E+P+LFDMYH+GYQEQMSHWPE PVNII++
Sbjct: 1   MRARLSGGHFRMINEKLYTCTGDEALDYFKEDPSLFDMYHTGYQEQMSHWPEQPVNIIIQ 60

Query: 135 WLKDHSPSLVIADFGCGDARLAKSVKNKVFSFDLVSNDPSVIACDMSNTPLNSSSVDVAV 194
           WLK  S SLV+ADFGCGDARLAK+VKNKVFSFDLVSNDPSVIACDMSNTPL++SS+DVAV
Sbjct: 61  WLKARSSSLVVADFGCGDARLAKNVKNKVFSFDLVSNDPSVIACDMSNTPLDASSIDVAV 120

Query: 195 FCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPV 254
           FCLSLMG NFP+YL+EA RVLKPSGWLLIAEVKSR DPNTGGADP  FSK++ DLGF   
Sbjct: 121 FCLSLMGTNFPSYLEEAHRVLKPSGWLLIAEVKSRLDPNTGGADPKMFSKSISDLGFTST 180

Query: 255 SKDFSNKMFIMFYFKKKEKQNSKSKEIQWPELKPCLYKRR 294
            KDFSNKMF++ YF+KKEK+ S  K I+WPELKPCLYKRR
Sbjct: 181 LKDFSNKMFVLLYFQKKEKETSTRKGIEWPELKPCLYKRR 220

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356558835|ref|XP_003547708.1| PREDICTED: ribosomal RNA-processing protein 8-like [Glycine max]

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 185/252 (73%), Positives = 212/252 (84%), Gaps = 3/252 (1%)

Query: 46  KNNEQQYEHHQTSAAASAKRPK---PSSFLDKMRARLSGGHFRMLNEKLYTCTGKEALDY 102
           +N     E   T  + SAKR K   PSSFL+KMRARLSGGHFRM+NEKLYTCTGKEALDY
Sbjct: 11  RNKHGGKEEQPTLPSPSAKRTKLKEPSSFLEKMRARLSGGHFRMINEKLYTCTGKEALDY 70

Query: 103 FNENPALFDMYHSGYQEQMSHWPELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVKNK 162
           F E P+LFD+YH+GY+ QMS+WPE PVN+I+KWLK  SPS  +ADFGCG+A +AKSVKN+
Sbjct: 71  FKEEPSLFDVYHAGYKTQMSNWPEQPVNVIIKWLKKQSPSFAVADFGCGEALIAKSVKNE 130

Query: 163 VFSFDLVSNDPSVIACDMSNTPLNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLL 222
           VFS DLVSNDP+VIAC+M+NTPL+SSSVDVAVFCLSLMG N+ +YL+E+ RVLKP GWLL
Sbjct: 131 VFSLDLVSNDPNVIACNMANTPLDSSSVDVAVFCLSLMGTNYQSYLKESYRVLKPGGWLL 190

Query: 223 IAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSKDFSNKMFIMFYFKKKEKQNSKSKEIQ 282
           IAEVKSRFDPNTGGADP KFS A+  LGF  V +DFSNKMFI+FYF KKEKQ SK KEI+
Sbjct: 191 IAEVKSRFDPNTGGADPEKFSNAISKLGFNSVKQDFSNKMFILFYFTKKEKQISKQKEIE 250

Query: 283 WPELKPCLYKRR 294
           WP LKPCLYKRR
Sbjct: 251 WPMLKPCLYKRR 262

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357451211|ref|XP_003595882.1| Ribosomal RNA-processing protein [Medicago truncatula] gi|355484930|gb|AES66133.1| Ribosomal RNA-processing protein [Medicago truncatula]

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 177/232 (76%), Positives = 203/232 (87%)

Query: 63  AKRPKPSSFLDKMRARLSGGHFRMLNEKLYTCTGKEALDYFNENPALFDMYHSGYQEQMS 122
           A   KPSSFL+KMRARLSGGHFRM+NEKLYTCTGKEAL+YF E+ +LF++YH+GY+ QMS
Sbjct: 22  ASNAKPSSFLEKMRARLSGGHFRMINEKLYTCTGKEALNYFREDSSLFNLYHAGYKTQMS 81

Query: 123 HWPELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVKNKVFSFDLVSNDPSVIACDMSN 182
           +WPE PVN+I+KWLK  SPS ++ADFGCG+AR+AKSVKN VFS DLVS+DP VIACDM+N
Sbjct: 82  NWPEQPVNVIIKWLKKQSPSFIVADFGCGEARIAKSVKNTVFSLDLVSSDPDVIACDMAN 141

Query: 183 TPLNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKF 242
           TPL S+S DVAVFCLSLMG N+  YL+EA RVLKP GWLLIAEVKSRFDPNTGGADP KF
Sbjct: 142 TPLGSASADVAVFCLSLMGTNYQTYLEEACRVLKPGGWLLIAEVKSRFDPNTGGADPEKF 201

Query: 243 SKAVCDLGFAPVSKDFSNKMFIMFYFKKKEKQNSKSKEIQWPELKPCLYKRR 294
           S A+ +LGF  V +DFSNKMFI+FYF KKEKQNSK KEI+WP LKPCLYKRR
Sbjct: 202 SNAISELGFNSVKRDFSNKMFILFYFTKKEKQNSKRKEIEWPSLKPCLYKRR 253

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297805624|ref|XP_002870696.1| hypothetical protein ARALYDRAFT_330455 [Arabidopsis lyrata subsp. lyrata] gi|297316532|gb|EFH46955.1| hypothetical protein ARALYDRAFT_330455 [Arabidopsis lyrata subsp. lyrata]

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 192/300 (64%), Positives = 229/300 (76%), Gaps = 16/300 (5%)

Query: 3   EGESRKRKRRRRHNSNSKPQDQESYQSKSTAKTTAKKHKQDTVKNNEQQYEHHQTSAAAS 62
           E  +  + R+R+   N KP  +E  ++ +      KK ++DT      + + H  S +AS
Sbjct: 4   EESTTSKNRKRKRQRNPKPSKEELIET-TPKNQNNKKSQRDT------KVQQHGGS-SAS 55

Query: 63  AKRPKPSSFLDKMRARLSGGHFRMLNEKLYTCTGKEALDYFNENPALFDMYHSGYQEQMS 122
           +KRPK S+FLD +R RLSGG FRMLNEKLYTC+GKEALDYF E+P +FDMYH+GYQ+QMS
Sbjct: 56  SKRPKSSNFLDALRERLSGGQFRMLNEKLYTCSGKEALDYFKEDPEMFDMYHTGYQQQMS 115

Query: 123 HWPELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVKNKVFSFDLVSNDPSVIACDMSN 182
           +WPELPVN I+ WL   S SLV+ADFGCGDAR+AKSVKNKVFSFDLVS +PSVIACDMSN
Sbjct: 116 NWPELPVNSIINWLLSKSSSLVVADFGCGDARIAKSVKNKVFSFDLVSKNPSVIACDMSN 175

Query: 183 TPLNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKF 242
           T L SSSVDV VFCLSLMG N+ +Y++EA RVL+PSG LLIAEVKSRFDPN GGADP  F
Sbjct: 176 TSLESSSVDVTVFCLSLMGTNYSSYIKEAHRVLRPSGMLLIAEVKSRFDPNNGGADPKDF 235

Query: 243 SKAVCDLGFAPV--------SKDFSNKMFIMFYFKKKEKQNSKSKEIQWPELKPCLYKRR 294
            KAVCDLGF  V        ++DFSNKMFI+F+FKKKE+ NS  K I+WPELK CLYKRR
Sbjct: 236 VKAVCDLGFTSVLKKLIWFFAQDFSNKMFILFHFKKKEQVNSNQKIIKWPELKACLYKRR 295

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	294
TAIR|locus:2168763	301	AT5G40530 [Arabidopsis thalian	0.765	0.747	0.663	5.8e-82
UNIPROTKB|O43159	456	RRP8 "Ribosomal RNA-processing	0.731	0.471	0.486	8.5e-49
UNIPROTKB|E1BJI1	457	RRP8 "Uncharacterized protein"	0.731	0.470	0.477	2.9e-48
UNIPROTKB|I3LPL4	459	RRP8 "Uncharacterized protein"	0.731	0.468	0.481	3.7e-48
UNIPROTKB|E2QUX8	664	RRP8 "Uncharacterized protein"	0.731	0.323	0.477	2.6e-47
MGI|MGI:1914251	457	Rrp8 "ribosomal RNA processing	0.731	0.470	0.481	8.8e-47
RGD|1308302	457	Rrp8 "ribosomal RNA processing	0.731	0.470	0.477	8.8e-47
POMBASE|SPAC56F8.09	318	rrp8 "rRNA methyltransferase R	0.731	0.676	0.437	3.9e-44
ZFIN|ZDB-GENE-030131-8898	533	wu:fk33d07 "wu:fk33d07" [Danio	0.727	0.401	0.447	3.9e-44
WB|WBGene00020296	343	T07A9.8 [Caenorhabditis elegan	0.717	0.615	0.420	5.7e-43

TAIR|locus:2168763 AT5G40530 [Arabidopsis thaliana (taxid:3702)]

 Score = 782 (280.3 bits), Expect = 5.8e-82, Sum P(2) = 5.8e-82
 Identities = 152/229 (66%), Positives = 176/229 (76%)

Query:    41 KQDTVKNNEQQYEHHQTXXXXXXXXXXX-XXFLDKMRARLSGGHFRMLNEKLYTCTGKEA 99
             K    K N++  ++ Q               FLD +R RLSGG FRMLNEKLYTC+GKEA
Sbjct:    33 KNQNEKKNQRDTKNQQHGGSSAPSKRPKPSNFLDALRERLSGGQFRMLNEKLYTCSGKEA 92

Query:   100 LDYFNENPALFDMYHSGYQEQMSHWPELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSV 159
             LDYF E+P +FDMYH+GYQ+QMS+WPELPVN I+ WL  +S SLV+ADFGCGDAR+AKSV
Sbjct:    93 LDYFKEDPQMFDMYHTGYQQQMSNWPELPVNSIINWLLSNSSSLVVADFGCGDARIAKSV 152

Query:   160 KNKVFSFDLVSNDPSVIACDMSNTPLNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPSG 219
             KNKVFSFDLVS +PSVIACDMSNT L SSSVDVAVFCLSLMG N+ +Y++EA RVL+PSG
Sbjct:   153 KNKVFSFDLVSKNPSVIACDMSNTSLESSSVDVAVFCLSLMGTNYSSYIKEAHRVLRPSG 212

Query:   220 WLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSKDFSNKMFIMFYF 268
              LLIAEVKSRFDPN GGADP  F KAVCDLGF  V K  S   F++ +F
Sbjct:   213 MLLIAEVKSRFDPNNGGADPKDFVKAVCDLGFTSVLKVQS---FLLLFF 258

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

UNIPROTKB|O43159 RRP8 "Ribosomal RNA-processing protein 8" [Homo sapiens (taxid:9606)]

 Score = 509 (184.2 bits), Expect = 8.5e-49, P = 8.5e-49
 Identities = 108/222 (48%), Positives = 133/222 (59%)

Query:    74 KMRARLSGGHFRMLNEKLYTCTGKEALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIV 133
             +M  RL G  FR LNE+LY+     A   F E+P  F +YH G+Q Q+  WP  PV+ I 
Sbjct:   241 RMAQRLDGARFRYLNEQLYSGPSSAAQRLFQEDPEAFLLYHRGFQSQVKKWPLQPVDRIA 300

Query:   134 KWLKDHSPSLVIADFGCGDARLAKSVKNKVFSFDLVSNDPSVIACDMSNTPLNSSSVDVA 193
             + L+    SLV+ADFGCGD RLA S++N V  FDL S DP V  CDM+  PL   SVDVA
Sbjct:   301 RDLRQRPASLVVADFGCGDCRLASSIRNPVHCFDLASLDPRVTVCDMAQVPLEDESVDVA 360

Query:   194 VFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAP 253
             VFCLSLMG N  ++L+EA RVLKP G L +AEV SRF+      D   F +AV  LGF  
Sbjct:   361 VFCLSLMGTNIRDFLEEANRVLKPGGLLKVAEVSSRFE------DVRTFLRAVTKLGFKI 414

Query:   254 VSKDFSNKMFIMFYFXXXXXXXXX-XXXIQWPELKPCLYKRR 294
             VSKD +N  F +F F             +   +L+PCLYKRR
Sbjct:   415 VSKDLTNSHFFLFDFQKTGPPLVGPKAQLSGLQLQPCLYKRR 456

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0016568 "chromatin modification" evidence=IEA

GO:0005730 "nucleolus" evidence=IDA

GO:0000183 "chromatin silencing at rDNA" evidence=IDA

GO:0033553 "rDNA heterochromatin" evidence=IDA

GO:0035064 "methylated histone residue binding" evidence=IDA

GO:0005677 "chromatin silencing complex" evidence=IDA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=TAS

GO:0072332 "intrinsic apoptotic signaling pathway by p53 class mediator" evidence=IMP

GO:0071158 "positive regulation of cell cycle arrest" evidence=IMP

GO:0046015 "regulation of transcription by glucose" evidence=IMP

GO:0042149 "cellular response to glucose starvation" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|E1BJI1 RRP8 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 504 (182.5 bits), Expect = 2.9e-48, P = 2.9e-48
 Identities = 106/222 (47%), Positives = 132/222 (59%)

Query:    74 KMRARLSGGHFRMLNEKLYTCTGKEALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIV 133
             +M  RL G  FR LNE+LY+     A   F E+P  F +YH G+Q Q+  WP  PV+ I 
Sbjct:   242 RMAQRLDGARFRYLNEQLYSGPSSAAQRLFQEDPEAFLLYHRGFQNQVKKWPLQPVDRIA 301

Query:   134 KWLKDHSPSLVIADFGCGDARLAKSVKNKVFSFDLVSNDPSVIACDMSNTPLNSSSVDVA 193
             + L+    SLV+ADFGCGD RLA S++N V  FDL S DP V  CDM+  PL   S+DVA
Sbjct:   302 RDLRQRPASLVVADFGCGDCRLASSIRNPVHCFDLASLDPRVTVCDMAQVPLEDESIDVA 361

Query:   194 VFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAP 253
             VFCLSLMG N  ++L+EA RVLKP G L +AEV SRF+      D   F  AV  LGF  
Sbjct:   362 VFCLSLMGTNIRDFLEEANRVLKPGGLLKVAEVSSRFE------DVRTFLGAVTKLGFKV 415

Query:   254 VSKDFSNKMFIMFYFXXXXXXXXX-XXXIQWPELKPCLYKRR 294
             +SKD +N  F +F F             +   +L+PCLYKRR
Sbjct:   416 ISKDLTNSHFFLFDFEKTGPPRVGPTTQLSGLKLQPCLYKRR 457

GO:0072332 "intrinsic apoptotic signaling pathway by p53 class mediator" evidence=IEA

GO:0071158 "positive regulation of cell cycle arrest" evidence=IEA

GO:0046015 "regulation of transcription by glucose" evidence=IEA

GO:0042149 "cellular response to glucose starvation" evidence=IEA

GO:0035064 "methylated histone residue binding" evidence=IEA

GO:0033553 "rDNA heterochromatin" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005677 "chromatin silencing complex" evidence=IEA

GO:0000183 "chromatin silencing at rDNA" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

UNIPROTKB|I3LPL4 RRP8 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 503 (182.1 bits), Expect = 3.7e-48, P = 3.7e-48
 Identities = 107/222 (48%), Positives = 133/222 (59%)

Query:    74 KMRARLSGGHFRMLNEKLYTCTGKEALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIV 133
             +M  RL G  FR LNE+LY+     A   F E+P  F +YH G+Q Q+  WP  PV+ I 
Sbjct:   244 RMAQRLDGARFRYLNEQLYSQPSHAAQRLFQEDPEAFLLYHRGFQSQVRKWPLQPVDRIA 303

Query:   134 KWLKDHSPSLVIADFGCGDARLAKSVKNKVFSFDLVSNDPSVIACDMSNTPLNSSSVDVA 193
             + L+    SLV+ADFGCGD RLA S++N V  FDL S DP V  CDM+  PL  +SVDVA
Sbjct:   304 RDLRQRPASLVVADFGCGDCRLASSIRNPVHCFDLASLDPRVTVCDMAQVPLEDASVDVA 363

Query:   194 VFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAP 253
             VFCLSLMG N  ++L+EA RVLKP G L +AEV SRF+      D   F  AV  LGF  
Sbjct:   364 VFCLSLMGTNIRDFLEEANRVLKPGGLLKVAEVSSRFE------DVRTFLGAVAKLGFKV 417

Query:   254 VSKDFSNKMFIMFYFXXXXXXXXX-XXXIQWPELKPCLYKRR 294
             +SKD +N  F +F F             +   +L+PCLYKRR
Sbjct:   418 ISKDLTNSHFFLFDFQKTGPPRVGPKAQLAGLKLQPCLYKRR 459

GO:0072332 "intrinsic apoptotic signaling pathway by p53 class mediator" evidence=IEA

GO:0071158 "positive regulation of cell cycle arrest" evidence=IEA

GO:0046015 "regulation of transcription by glucose" evidence=IEA

GO:0042149 "cellular response to glucose starvation" evidence=IEA

GO:0035064 "methylated histone residue binding" evidence=IEA

GO:0033553 "rDNA heterochromatin" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005677 "chromatin silencing complex" evidence=IEA

GO:0000183 "chromatin silencing at rDNA" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

UNIPROTKB|E2QUX8 RRP8 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 495 (179.3 bits), Expect = 2.6e-47, P = 2.6e-47
 Identities = 106/222 (47%), Positives = 131/222 (59%)

Query:    74 KMRARLSGGHFRMLNEKLYTCTGKEALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIV 133
             +M  RL G  FR LNE+LY+     A   F E+P  F +YH G+Q Q+  WP  PV+ I 
Sbjct:   449 RMAQRLDGARFRYLNEQLYSKPSSAAQRLFQEDPEAFLLYHRGFQSQVKKWPLQPVDRIA 508

Query:   134 KWLKDHSPSLVIADFGCGDARLAKSVKNKVFSFDLVSNDPSVIACDMSNTPLNSSSVDVA 193
             + L+    SLV+ADFGCGD RLA S++N V  FDL S DP V  CDM+  PL   SVDVA
Sbjct:   509 RDLRQRPASLVVADFGCGDCRLASSIRNTVHCFDLASLDPRVTVCDMAQVPLEDESVDVA 568

Query:   194 VFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAP 253
             VFCLSLMG N  ++L+EA RVLK  G L +AEV SRF+      D   F  AV  LGF  
Sbjct:   569 VFCLSLMGTNIRDFLEEANRVLKQGGLLKVAEVSSRFE------DVRTFLGAVTKLGFKV 622

Query:   254 VSKDFSNKMFIMFYFXXXXXXXXX-XXXIQWPELKPCLYKRR 294
             +SKD +N  F +F F             +   +L+PCLYKRR
Sbjct:   623 ISKDLTNSHFFLFDFEKTGPPRVGPKAQLTGLKLQPCLYKRR 664

GO:0072332 "intrinsic apoptotic signaling pathway by p53 class mediator" evidence=IEA

GO:0071158 "positive regulation of cell cycle arrest" evidence=IEA

GO:0046015 "regulation of transcription by glucose" evidence=IEA

GO:0042149 "cellular response to glucose starvation" evidence=IEA

GO:0035064 "methylated histone residue binding" evidence=IEA

GO:0033553 "rDNA heterochromatin" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005677 "chromatin silencing complex" evidence=IEA

GO:0000183 "chromatin silencing at rDNA" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

MGI|MGI:1914251 Rrp8 "ribosomal RNA processing 8, methyltransferase, homolog (yeast)" [Mus musculus (taxid:10090)]

 Score = 490 (177.5 bits), Expect = 8.8e-47, P = 8.8e-47
 Identities = 107/222 (48%), Positives = 130/222 (58%)

Query:    74 KMRARLSGGHFRMLNEKLYTCTGKEALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIV 133
             +M  RL G  FR LNE+LY+     A   F E+P  F +YH G+Q Q+  WP  PV+ I 
Sbjct:   242 RMTQRLDGARFRYLNEQLYSGPSSAARRLFQEDPEAFLLYHRGFQRQVKKWPLHPVDRIA 301

Query:   134 KWLKDHSPSLVIADFGCGDARLAKSVKNKVFSFDLVSNDPSVIACDMSNTPLNSSSVDVA 193
             K L+    SLV+ADFGCGD RLA SV+N V  FDL S DP V  CDM+  PL   SVDVA
Sbjct:   302 KDLRQKPASLVVADFGCGDCRLASSVRNPVHCFDLASLDPRVTVCDMAQVPLEDESVDVA 361

Query:   194 VFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAP 253
             VFCLSLMG N  ++L+EA RVLK  G L +AEV SRF+      D   F  AV  LGF  
Sbjct:   362 VFCLSLMGTNIRDFLEEANRVLKTGGLLKVAEVSSRFE------DIRTFLGAVTKLGFKI 415

Query:   254 VSKDFSNKMFIMFYFXXXXXXXXX-XXXIQWPELKPCLYKRR 294
             + KD +N  F +F F             +   +L+PCLYKRR
Sbjct:   416 IYKDLTNSHFFLFDFEKTGPPRVGPKAQLSGLKLQPCLYKRR 457

GO:0000183 "chromatin silencing at rDNA" evidence=ISO

GO:0005634 "nucleus" evidence=IEA

GO:0005677 "chromatin silencing complex" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0016568 "chromatin modification" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

GO:0033553 "rDNA heterochromatin" evidence=ISO

GO:0035064 "methylated histone residue binding" evidence=ISO

GO:0042149 "cellular response to glucose starvation" evidence=ISO

GO:0046015 "regulation of transcription by glucose" evidence=ISO

GO:0071158 "positive regulation of cell cycle arrest" evidence=ISO

GO:0072332 "intrinsic apoptotic signaling pathway by p53 class mediator" evidence=ISO

RGD|1308302 Rrp8 "ribosomal RNA processing 8, methyltransferase, homolog (yeast)" [Rattus norvegicus (taxid:10116)]

 Score = 490 (177.5 bits), Expect = 8.8e-47, P = 8.8e-47
 Identities = 106/222 (47%), Positives = 130/222 (58%)

Query:    74 KMRARLSGGHFRMLNEKLYTCTGKEALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIV 133
             +M  RL G  FR LNE+LY+     A   F E+P  F +YH G+Q Q+  WP  PV+ I 
Sbjct:   242 RMTQRLDGARFRYLNEQLYSGPSSAAQCLFQEDPEAFLLYHRGFQRQVKKWPLHPVDRIA 301

Query:   134 KWLKDHSPSLVIADFGCGDARLAKSVKNKVFSFDLVSNDPSVIACDMSNTPLNSSSVDVA 193
             K L+    SLV+ADFGCGD RLA SV+N V  FDL + DP V  CDM+  PL   SVDVA
Sbjct:   302 KDLRQKPASLVVADFGCGDCRLASSVRNPVHCFDLAALDPRVTVCDMAQVPLEDESVDVA 361

Query:   194 VFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAP 253
             VFCLSLMG N  ++L+EA RVLKP G L +AEV SRF+      D   F  AV  LGF  
Sbjct:   362 VFCLSLMGTNIRDFLEEANRVLKPGGLLKVAEVSSRFE------DIRTFLGAVTKLGFKV 415

Query:   254 VSKDFSNKMFIMFYFXXXXXXXXX-XXXIQWPELKPCLYKRR 294
             + KD +N  F +F F             +   +L+PCLYK R
Sbjct:   416 IYKDLTNSHFFLFDFEKTGPPRVGPKAQLSGLKLQPCLYKHR 457

GO:0000183 "chromatin silencing at rDNA" evidence=ISO;ISS

GO:0005634 "nucleus" evidence=ISO

GO:0005677 "chromatin silencing complex" evidence=ISO;ISS

GO:0005730 "nucleolus" evidence=ISO;ISS

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0005886 "plasma membrane" evidence=IEA;ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0016568 "chromatin modification" evidence=IEA

GO:0033553 "rDNA heterochromatin" evidence=ISO;ISS

GO:0035064 "methylated histone residue binding" evidence=ISO;ISS

GO:0042149 "cellular response to glucose starvation" evidence=IEA;ISO

GO:0046015 "regulation of transcription by glucose" evidence=IEA;ISO

GO:0071158 "positive regulation of cell cycle arrest" evidence=IEA;ISO

GO:0072332 "intrinsic apoptotic signaling pathway by p53 class mediator" evidence=IEA;ISO

POMBASE|SPAC56F8.09 rrp8 "rRNA methyltransferase Rrp8 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 465 (168.7 bits), Expect = 3.9e-44, P = 3.9e-44
 Identities = 102/233 (43%), Positives = 144/233 (61%)

Query:    74 KMRARLSGGHFRMLNEKLYTCTGKEALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIV 133
             KM+ +L G +FR +NE+LYT    +A+  F ENP LFD+YH+G++ Q+  WPE PV+I +
Sbjct:    92 KMKDKLDGANFRWINEQLYTTESDKAVQMFKENPDLFDIYHAGFRYQVEGWPENPVDIFI 151

Query:   134 KWLK---DHSPS-----LVIADFGCGDARLA----KSVKNKVFSFDLVSNDPSVIACDMS 181
             + LK   +HS +     +VIAD GCG+A++A    KS   +V SFDLV+ +  V+ACD++
Sbjct:   152 QHLKIRFEHSNAKKKNNIVIADLGCGEAKIASTFRKSRSLQVHSFDLVAPNEHVVACDIA 211

Query:   182 NTPLNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNK 241
             N P+   +VD+AVFCLSLMG N+ ++L+EA R+LK  G L +AE+KSRF   +G      
Sbjct:   212 NVPMADETVDIAVFCLSLMGTNWQSFLKEAYRILKVGGLLWVAEIKSRFSDKSGEV---- 267

Query:   242 FSKAVCDLGFAPVSKDFSNKMFIMFYFXXXXXXXXXXXXIQWPELKPCLYKRR 294
             F+K +  LGF   S    NKMF +F F               P L  C+YKRR
Sbjct:   268 FAKELPKLGFETKSIQLQNKMFTLFEFKKVPVHGKCEELP--PILSACIYKRR 318

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=ISO;IDA

GO:0006364 "rRNA processing" evidence=ISO

GO:0008168 "methyltransferase activity" evidence=ISO

ZFIN|ZDB-GENE-030131-8898 wu:fk33d07 "wu:fk33d07" [Danio rerio (taxid:7955)]

 Score = 465 (168.7 bits), Expect = 3.9e-44, P = 3.9e-44
 Identities = 99/221 (44%), Positives = 129/221 (58%)

Query:    74 KMRARLSGGHFRMLNEKLYTCTGKEALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIV 133
             KM  +L    FR +NE+LYT T   A   F ++P    +YH GY  Q+ HWP  PV+ I+
Sbjct:   320 KMEKQLEAARFRFINEQLYTSTSAAAKRMFQQDPDAITIYHKGYTTQVQHWPTNPVDSII 379

Query:   134 KWLKDHSPSLVIADFGCGDARLAKSVKNKVFSFDLVSNDPSVIACDMSNTPLNSSSVDVA 193
              ++     SLV+ADFGCGD ++A+SVKNKV SFDL        ACDM+  PL  S+V++A
Sbjct:   380 SYICQKPASLVVADFGCGDCKIARSVKNKVHSFDLAPVCELATACDMAKVPLGDSTVNIA 439

Query:   194 VFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAP 253
             VFCLSLMG N  ++L EA RVL   G L IAEV SRF+ N      + F +A+ ++GF  
Sbjct:   440 VFCLSLMGTNLGDFLAEANRVLVMGGVLKIAEVASRFE-NV-----HSFVRALSNMGFKI 493

Query:   254 VSKDFSNKMFIMFYFXXXXXXXXXXXXIQWPELKPCLYKRR 294
             V+KD  N  F  F F                +LKPCLYK+R
Sbjct:   494 VNKDTENSHFFSFEFIKTRKAPENAKKFGL-QLKPCLYKKR 533

GO:0008168 "methyltransferase activity" evidence=IEA

WB|WBGene00020296 T07A9.8 [Caenorhabditis elegans (taxid:6239)]

 Score = 454 (164.9 bits), Expect = 5.7e-43, P = 5.7e-43
 Identities = 93/221 (42%), Positives = 131/221 (59%)

Query:    76 RARLSGGHFRMLNEKLYTCTGKEALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIVKW 135
             + RL  G FR LNEKLYTCTG EA D+F E+P  FD+YH G+ +Q+  WP  P+  I++W
Sbjct:   131 KKRLDAGRFRFLNEKLYTCTGSEAFDFFKEDPTAFDLYHKGFADQVKKWPNHPLREIIRW 190

Query:   136 LKDHSPSLVIADFGCGDARLAKSV--KNKVFSFDLVSNDPSVIACDMSNTPLNSSSVDVA 193
             L+       + D GCG+A++A++V  K+K+ SFDLV+ +  V +CDMS  P   SS D+ 
Sbjct:   191 LQSKPDQQSVFDLGCGEAKIAEAVGEKHKIRSFDLVAVNDRVESCDMSKLPAEDSSADIV 250

Query:   194 VFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAP 253
             ++CLSLMG N  ++++EA+RVLK  G L IAEV SRF          +F +A+  +GF  
Sbjct:   251 IYCLSLMGTNLYDFIREARRVLKIGGILKIAEVTSRF------VSIKQFCEAITKMGFEQ 304

Query:   254 VSKDFSNKMFIMFYFXXXXXXXXXXXXIQWPELKPCLYKRR 294
               +      F+M  F                +LKPCLYK+R
Sbjct:   305 SHRRELTDYFMMMEFKKVEKVEQKRPY--GLKLKPCLYKKR 343

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0008340 "determination of adult lifespan" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q84JC0	RRP8_ARATH	2, ., 1, ., 1, ., -	0.7018	0.9081	0.9303	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	0.691
4th Layer	2.1.1.145	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00020651001	SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (263 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00033408001	SubName- Full=Chromosome chr19 scaffold_66, whole genome shotgun sequence; (430 aa)				•			•		0.757
	GSVIVG00021307001	SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (586 aa)				•	•		•		0.717
	GSVIVG00021672001	SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (315 aa)				•					0.667
	GSVIVG00005498001	SubName- Full=Putative uncharacterized protein (Chromosome chr13 scaffold_152, whole genome sho [...] (293 aa)				•					0.659
	GSVIVG00024485001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (175 aa)				•			•		0.650
	GSVIVG00007719001	SubName- Full=Chromosome chr3 scaffold_199, whole genome shotgun sequence; (387 aa)				•			•		0.649
	26N20_60	SubName- Full=Chromosome chr8 scaffold_68, whole genome shotgun sequence; (229 aa)				•	•				0.636
	GSVIVG00038090001	SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (182 aa)				•					0.630
	GSVIVG00028481001	SubName- Full=Chromosome chr7 scaffold_44, whole genome shotgun sequence; (316 aa)				•					0.630
	GSVIVG00025475001	SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (188 aa)				•	•		•		0.626

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	294
pfam05148	219	pfam05148, Methyltransf_8, Hypothetical methyltran	1e-85
pfam08241	92	pfam08241, Methyltransf_11, Methyltransferase doma	5e-09
COG2226	238	COG2226, UbiE, Methylase involved in ubiquinone/me	2e-05
pfam13489	154	pfam13489, Methyltransf_23, Methyltransferase doma	6e-05
COG0500	257	COG0500, SmtA, SAM-dependent methyltransferases [S	1e-04
cd02440	107	cd02440, AdoMet_MTases, S-adenosylmethionine-depen	3e-04
pfam12847	104	pfam12847, Methyltransf_18, Methyltransferase doma	0.001

>gnl|CDD|203179 pfam05148, Methyltransf_8, Hypothetical methyltransferase

 Score =  255 bits (653), Expect = 1e-85
 Identities = 106/223 (47%), Positives = 136/223 (60%), Gaps = 10/223 (4%)

Query: 74  KMRARLSGGHFRMLNEKLYTCTGKEALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIV 133
           KM+ RL GG FRMLNEKLYT  G  A D F E+P  FD+YH G+  Q+  WP  P+++I+
Sbjct: 5   KMKKRLDGGRFRMLNEKLYTGKGSRAGDLFKEDPDAFDLYHEGFNLQVKKWPVNPLDVII 64

Query: 134 KWLKDHSPSLVIADFGCGDARLAKSVKN--KVFSFDLVSNDPSVIACDMSNTPLNSSSVD 191
           + LK    + VIAD GCG+AR+A   +    V SFDLV+ +  VI CDM+  PL   SVD
Sbjct: 65  RKLKRRPGNGVIADLGCGEARIAFRKREFENVHSFDLVAVNKRVIPCDMARVPLEDESVD 124

Query: 192 VAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGF 251
           VAVFCLSLMG N  ++L+EA R+LK  G L IAEV+SRF           F +A   LGF
Sbjct: 125 VAVFCLSLMGTNIADFLKEANRILKNGGLLKIAEVRSRF------PSVGLFERAFTKLGF 178

Query: 252 APVSKDFSNKMFIMFYFKKKEKQNSKSKEIQWPELKPCLYKRR 294
                D SN  F++F F+K  +     K +   +L PCLYK+R
Sbjct: 179 EVEHVDLSNAQFVLFEFQKTSRV--GPKRLLGLKLVPCLYKKR 219

This family consists of several uncharacterized eukaryotic proteins which are related to methyltransferases pfam01209. Length = 219

>gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain

 Score = 52.3 bits (126), Expect = 5e-09
 Identities = 28/91 (30%), Positives = 35/91 (38%), Gaps = 14/91 (15%)

Query: 147 DFGCGDAR----LAKSVKNKVFSFDLVSN---------DPSVIACDMSNTPLNSSSVDVA 193
           D GCG       LA+    +V   DL                +  D  + P    S DV 
Sbjct: 2   DVGCGTGLLAEALARRGGARVTGVDLSPEMLALARKRAPRKFVVGDAEDLPFPDESFDVV 61

Query: 194 VFCLSLMGINFPN-YLQEAQRVLKPSGWLLI 223
           V  L L  +  P   L+E  RVLKP G L+I
Sbjct: 62  VSSLVLHHLPDPERALREIARVLKPGGKLVI 92

Members of this family are SAM dependent methyltransferases. Length = 92

>gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 28/116 (24%), Positives = 40/116 (34%), Gaps = 26/116 (22%)

Query: 133 VKWLKDHSPSLVIADFGCGDARLAKSVKNKVFSFDLVSNDPSV----------------- 175
           +  L    P   + D  CG   +A  +   V + ++V  D S                  
Sbjct: 44  ISLL-GIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQN 102

Query: 176 ---IACDMSNTPLNSSSVDVAVFCLSLMGINFPNY---LQEAQRVLKPSGWLLIAE 225
              +  D  N P   +S D       L   N  +    L+E  RVLKP G LL+ E
Sbjct: 103 VEFVVGDAENLPFPDNSFDAVTISFGLR--NVTDIDKALKEMYRVLKPGGRLLVLE 156

Length = 238

>gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain

 Score = 42.1 bits (99), Expect = 6e-05
 Identities = 25/115 (21%), Positives = 44/115 (38%), Gaps = 10/115 (8%)

Query: 117 YQEQMSHWPELPVNIIVKWLKDHSPSLVIADFGCG---DARLAKSVKNKVFSFDLVSNDP 173
           Y+ Q   +    +  ++  LK     L   D GCG     RL +     V   D      
Sbjct: 1   YRRQRERFLARLLARLLPRLKPGGRVL---DIGCGTGILLRLLRERGFDVTGVDPSPAAV 57

Query: 174 SVIACDMSNTPLNSS-SVDVAVFCLSLMG--INFPNYLQEAQRVLKPSGWLLIAE 225
            + +   +  P   +   D+ +    ++    + P  LQ+ + +LKP G LLI+ 
Sbjct: 58  LIFSLFDAPDPAVLAGKYDL-ITAFEVLEHLPDPPALLQQLRELLKPGGVLLIST 111

This family appears to be a methyltransferase domain. Length = 154

>gnl|CDD|223574 COG0500, SmtA, SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

 Score = 42.2 bits (96), Expect = 1e-04
 Identities = 34/160 (21%), Positives = 56/160 (35%), Gaps = 29/160 (18%)

Query: 90  KLYTCTGKEALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIVKWLKDHSPSLVIADFG 149
            L        L+ ++    L D +    +E +     L        L+     L + D G
Sbjct: 3   LLSAELLSRILELYDRLAELLDAFLLLAEELLDLLLVLR------LLRLLPGGLGVLDIG 56

Query: 150 CGDARLAKSVKNKVFSFDLVSNDPS--------------------VIACDMSNTPL---N 186
           CG  RLA   +       +V  D S                     +  D     L   +
Sbjct: 57  CGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFED 116

Query: 187 SSSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEV 226
           S+S D+ +  L L  +     L+E  RVLKP G L+++++
Sbjct: 117 SASFDLVISLLVLHLLPPAKALRELLRVLKPGGRLVLSDL 156

Length = 257

>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

 Score = 39.0 bits (91), Expect = 3e-04
 Identities = 24/101 (23%), Positives = 42/101 (41%), Gaps = 22/101 (21%)

Query: 145 IADFGCGD----ARLAKSVKNKVFSFDL---------------VSNDPSVIACDMSNTPL 185
           + D GCG       LA     +V   D+               ++++  V+  D    P 
Sbjct: 2   VLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPP 61

Query: 186 NS-SSVDVAVFCLSLMGI--NFPNYLQEAQRVLKPSGWLLI 223
            +  S DV +    L  +  +   +L+EA+R+LKP G L++
Sbjct: 62  EADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVL 102

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107

>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain

 Score = 37.7 bits (88), Expect = 0.001
 Identities = 22/106 (20%), Positives = 31/106 (29%), Gaps = 22/106 (20%)

Query: 141 PSLVIADFGCGDARLAKSVKNKVFSFDLVSNDPS--------------------VIACDM 180
           P   + D GCG   LA  +        +   D S                     +  D 
Sbjct: 1   PGARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAKLALGPRITFVQGDA 60

Query: 181 SNTPLNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEV 226
            +        D AVF     G +    L     +LKP G L++  V
Sbjct: 61  PDALDLLEGFD-AVFI-GGGGGDLLELLDALASLLKPGGRLVLNAV 104

Protein in this family function as methyltransferases. Length = 104

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	294
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	100.0
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	100.0
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.86
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.83
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.81
PLN02244	340	tocopherol O-methyltransferase	99.75
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.73
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	99.73
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.72
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.7
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.69
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.69
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.68
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.68
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.67
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.67
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.65
PLN02490	340	MPBQ/MSBQ methyltransferase	99.65
PLN02336	475	phosphoethanolamine N-methyltransferase	99.64
PRK05785	226	hypothetical protein; Provisional	99.63
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.63
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.62
PRK11207	197	tellurite resistance protein TehB; Provisional	99.6
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.58
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	99.58
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.58
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.57
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.56
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.56
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.55
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.55
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.55
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.54
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.54
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	99.52
PRK08317	241	hypothetical protein; Provisional	99.52
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.51
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.49
PRK12335	287	tellurite resistance protein TehB; Provisional	99.49
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.49
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	99.49
PRK06202	232	hypothetical protein; Provisional	99.49
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.46
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.46
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.45
PLN02336	475	phosphoethanolamine N-methyltransferase	99.45
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.44
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	99.44
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	99.44
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	99.44
PRK04266	226	fibrillarin; Provisional	99.43
KOG4300	252	consensus Predicted methyltransferase [General fun	99.42
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.41
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.41
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.4
PRK06922	677	hypothetical protein; Provisional	99.4
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.38
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.38
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.38
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.37
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.37
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.36
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	99.35
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.35
PTZ00146	293	fibrillarin; Provisional	99.34
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.32
PLN02585	315	magnesium protoporphyrin IX methyltransferase	99.31
KOG2361	264	consensus Predicted methyltransferase [General fun	99.29
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	99.28
PRK14968	188	putative methyltransferase; Provisional	99.27
PLN03075	296	nicotianamine synthase; Provisional	99.27
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.26
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.26
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.26
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.25
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.22
KOG3010	261	consensus Methyltransferase [General function pred	99.22
TIGR03438	301	probable methyltransferase. This model represents	99.21
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.21
PLN02232	160	ubiquinone biosynthesis methyltransferase	99.21
TIGR00438	188	rrmJ cell division protein FtsJ.	99.2
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.2
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.18
PRK14967	223	putative methyltransferase; Provisional	99.18
PRK13256	226	thiopurine S-methyltransferase; Reviewed	99.18
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.17
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	99.17
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.17
KOG1271	227	consensus Methyltransferases [General function pre	99.17
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.16
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.15
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.14
COG4123	248	Predicted O-methyltransferase [General function pr	99.14
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.13
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.13
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.11
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.1
COG4976	287	Predicted methyltransferase (contains TPR repeat)	99.1
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.09
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	99.09
PHA03411	279	putative methyltransferase; Provisional	99.08
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.07
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.06
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	99.05
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	99.05
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.03
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.03
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.02
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.01
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.01
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	99.0
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	99.0
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	99.0
KOG1331	293	consensus Predicted methyltransferase [General fun	98.98
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	98.97
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	98.96
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	98.9
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	98.9
PRK14901	434	16S rRNA methyltransferase B; Provisional	98.9
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.89
KOG2940	325	consensus Predicted methyltransferase [General fun	98.86
PRK07402	196	precorrin-6B methylase; Provisional	98.86
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	98.84
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	98.82
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	98.82
PRK14904	445	16S rRNA methyltransferase B; Provisional	98.81
PRK10901	427	16S rRNA methyltransferase B; Provisional	98.79
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	98.79
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	98.78
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	98.77
PRK14902	444	16S rRNA methyltransferase B; Provisional	98.76
PRK14903	431	16S rRNA methyltransferase B; Provisional	98.76
COG2890	280	HemK Methylase of polypeptide chain release factor	98.72
PHA03412	241	putative methyltransferase; Provisional	98.72
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	98.72
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	98.71
PRK04457	262	spermidine synthase; Provisional	98.7
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	98.7
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	98.69
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	98.69
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	98.68
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	98.66
PRK00811	283	spermidine synthase; Provisional	98.63
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	98.6
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	98.6
PRK01581	374	speE spermidine synthase; Validated	98.59
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	98.59
PLN02672	1082	methionine S-methyltransferase	98.57
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	98.56
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.55
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	98.55
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	98.53
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	98.53
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.53
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.51
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	98.51
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	98.49
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	98.48
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	98.47
PRK03612	521	spermidine synthase; Provisional	98.46
COG2521	287	Predicted archaeal methyltransferase [General func	98.43
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	98.43
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	98.38
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	98.38
PLN02366	308	spermidine synthase	98.36
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	98.36
COG1041	347	Predicted DNA modification methylase [DNA replicat	98.34
KOG2899	288	consensus Predicted methyltransferase [General fun	98.33
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	98.32
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	98.29
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	98.26
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	98.26
KOG2904	328	consensus Predicted methyltransferase [General fun	98.22
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	98.21
PLN02476	278	O-methyltransferase	98.21
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.17
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	98.16
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.15
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.14
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	98.12
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	98.1
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	98.07
COG4122	219	Predicted O-methyltransferase [General function pr	98.07
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	98.05
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	98.05
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	98.05
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.02
PLN02589	247	caffeoyl-CoA O-methyltransferase	98.0
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	97.96
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	97.94
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	97.92
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	97.92
KOG2798	369	consensus Putative trehalase [Carbohydrate transpo	97.9
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	97.89
PRK04148	134	hypothetical protein; Provisional	97.87
PLN02823	336	spermine synthase	97.87
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	97.87
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	97.86
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	97.86
COG4798	238	Predicted methyltransferase [General function pred	97.84
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	97.83
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	97.72
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	97.72
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	97.71
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	97.68
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	97.67
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	97.63
COG4627	185	Uncharacterized protein conserved in bacteria [Fun	97.63
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	97.62
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	97.61
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	97.6
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	97.59
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	97.59
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	97.59
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	97.58
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	97.56
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	97.52
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	97.51
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	97.49
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	97.49
PRK00536	262	speE spermidine synthase; Provisional	97.42
KOG2352	482	consensus Predicted spermine/spermidine synthase [	97.39
COG2520	341	Predicted methyltransferase [General function pred	97.38
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	97.33
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	97.31
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	97.3
PF03492	334	Methyltransf_7: SAM dependent carboxyl methyltrans	97.25
PLN02668	386	indole-3-acetate carboxyl methyltransferase	97.24
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	97.2
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	97.13
COG0742	187	N6-adenine-specific methylase [DNA replication, re	97.1
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	97.07
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	97.06
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	97.04
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	96.91
COG2265	432	TrmA SAM-dependent methyltransferases related to t	96.89
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	96.86
COG2384	226	Predicted SAM-dependent methyltransferase [General	96.86
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	96.86
COG4076	252	Predicted RNA methylase [General function predicti	96.86
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	96.84
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	96.83
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	96.73
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	96.66
KOG3201	201	consensus Uncharacterized conserved protein [Funct	96.62
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	96.56
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	96.56
COG4262	508	Predicted spermidine synthase with an N-terminal m	96.49
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	96.48
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	96.44
COG3897	218	Predicted methyltransferase [General function pred	96.43
KOG1099	294	consensus SAM-dependent methyltransferase/cell div	95.99
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	95.91
KOG0822	649	consensus Protein kinase inhibitor [Cell cycle con	95.68
KOG3115	249	consensus Methyltransferase-like protein [General	95.57
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	95.53
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	95.48
PF13679	141	Methyltransf_32: Methyltransferase domain	95.36
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	95.31
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	95.09
PRK13699	227	putative methylase; Provisional	95.07
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	94.84
PF05430	124	Methyltransf_30: S-adenosyl-L-methionine-dependent	94.83
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	94.74
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	94.48
KOG2793	248	consensus Putative N2,N2-dimethylguanosine tRNA me	94.42
KOG2730	263	consensus Methylase [General function prediction o	94.14
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	94.03
KOG1596	317	consensus Fibrillarin and related nucleolar RNA-bi	93.82
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	93.68
KOG2920	282	consensus Predicted methyltransferase [General fun	93.67
PF03269	177	DUF268: Caenorhabditis protein of unknown function	93.58
KOG4058	199	consensus Uncharacterized conserved protein [Funct	93.45
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	93.23
PF06859	110	Bin3: Bicoid-interacting protein 3 (Bin3); InterPr	93.01
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	92.8
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	91.99
COG4301	321	Uncharacterized conserved protein [Function unknow	91.82
PRK11524	284	putative methyltransferase; Provisional	91.5
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	91.3
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	91.06
KOG1098	780	consensus Putative SAM-dependent rRNA methyltransf	91.04
PRK10742	250	putative methyltransferase; Provisional	90.22
COG0286	489	HsdM Type I restriction-modification system methyl	90.14
PRK10458	467	DNA cytosine methylase; Provisional	89.62
PTZ00357	1072	methyltransferase; Provisional	89.31
TIGR00027	260	mthyl_TIGR00027 methyltransferase, putative, TIGR0	89.31
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	89.15
PF11312	315	DUF3115: Protein of unknown function (DUF3115); In	89.11
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	88.8
PF11253	127	DUF3052: Protein of unknown function (DUF3052); In	85.02
COG0270	328	Dcm Site-specific DNA methylase [DNA replication,	84.87
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	84.74
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	84.13
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	83.62
KOG2198	375	consensus tRNA cytosine-5-methylases and related e	83.48
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	83.39
PF10354	166	DUF2431: Domain of unknown function (DUF2431); Int	82.92
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	82.73
PF03686	127	UPF0146: Uncharacterised protein family (UPF0146);	81.57
PF12692	160	Methyltransf_17: S-adenosyl-L-methionine methyltra	81.27

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=100.00  E-value=2.5e-46  Score=320.58  Aligned_cols=284  Identities=45%  Similarity=0.800  Sum_probs=232.9

Q ss_pred             CcchhhHHHhhhcccCCCCCCchhhhhhhhhhh---------hhhhccccc--cccccccccccccccccccCCCCCCch
Q 022592            2 KEGESRKRKRRRRHNSNSKPQDQESYQSKSTAK---------TTAKKHKQD--TVKNNEQQYEHHQTSAAASAKRPKPSS   70 (294)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~k~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~   70 (294)
                      ++++++|.|+|+++++|.+.+......+.....         +.+...|.+  ..+.+ .+.|...-...........++
T Consensus        31 k~~~~kKkkKRkk~~rkl~~~k~A~~~e~v~~~p~g~~ak~~~~~n~~kk~r~~~kkk-k~~p~~~a~~~~~t~~~~~~~  109 (325)
T KOG3045|consen   31 KTKEEKKKKKRKKGERKLKAKKAAELKENVEEPPLGSEAKSSPKENSKKKRRNETKKK-KEKPPEKAGAAAETEKTEATD  109 (325)
T ss_pred             ccchhhhhhhhhhHHHhhhhhhhhhhhcCccCCCCcccCCCCCcccchhhccCccccc-ccCChhhhccccchhhhcccC
Confidence            467888999999998888877765554433221         111111111  11111 112211111111112235788


Q ss_pred             HHHHHHccccccccceeccccccCCcHHHHHHHhcChhhHHHHHHhHHhhhccCCCcHHHHHHHHhhccCCCCEEEEEcC
Q 022592           71 FLDKMRARLSGGHFRMLNEKLYTCTGKEALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIVKWLKDHSPSLVIADFGC  150 (294)
Q Consensus        71 ~~~~m~~~l~~~~fr~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~VLDiGc  150 (294)
                      ++..|..+|.|++||++|+++|++.+..++++|.+++..|+.||.+|..+...||.+|++.+++.|...+....|.|+||
T Consensus       110 l~~km~~rL~ggrFR~lNEqLYt~~s~~A~~lfkedp~afdlYH~gfr~QV~kWP~nPld~ii~~ik~r~~~~vIaD~GC  189 (325)
T KOG3045|consen  110 LQAKMKKRLDGGRFRYLNEQLYTGTSSEAFDLFKEDPTAFDLYHAGFRSQVKKWPENPLDVIIRKIKRRPKNIVIADFGC  189 (325)
T ss_pred             HHHHHHHhhcccceehhhhhhccCCcHHHHHHHhcCcHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhCcCceEEEeccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999998877779999999


Q ss_pred             cccHHHHHhccceEEEeccCCCCcEEEccCCCCCCCCCCccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEeecCCC
Q 022592          151 GDARLAKSVKNKVFSFDLVSNDPSVIACDMSNTPLNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRF  230 (294)
Q Consensus       151 G~G~~~~~l~~~v~gvD~s~~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e~~~~~  230 (294)
                      |.+.++......|+.+|+...+-+++.||+.++|++++++|++|+|.+|+.+|+..++.|++|+|+|||.++|+|+.++|
T Consensus       190 GEakiA~~~~~kV~SfDL~a~~~~V~~cDm~~vPl~d~svDvaV~CLSLMgtn~~df~kEa~RiLk~gG~l~IAEv~SRf  269 (325)
T KOG3045|consen  190 GEAKIASSERHKVHSFDLVAVNERVIACDMRNVPLEDESVDVAVFCLSLMGTNLADFIKEANRILKPGGLLYIAEVKSRF  269 (325)
T ss_pred             chhhhhhccccceeeeeeecCCCceeeccccCCcCccCcccEEEeeHhhhcccHHHHHHHHHHHhccCceEEEEehhhhc
Confidence            99999987778999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCHHHHHHHHHHCCCeEEEEeccCCeEEEEEEEECCccccccccCCCCcccccccccC
Q 022592          231 DPNTGGADPNKFSKAVCDLGFAPVSKDFSNKMFIMFYFKKKEKQNSKSKEIQWPELKPCLYKRR  294 (294)
Q Consensus       231 ~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~f~~i~~~k~~~~~~~~~~~~~~~~~~~~~~~~  294 (294)
                      .      +...|...|...||.+.+.+..+.+|++++|.|...  .+.+.-.-..|+||+||||
T Consensus       270 ~------dv~~f~r~l~~lGF~~~~~d~~n~~F~lfefkK~~~--~k~~k~~~~~l~pclyKkR  325 (325)
T KOG3045|consen  270 S------DVKGFVRALTKLGFDVKHKDVSNKYFTLFEFKKTPK--PKAPKPRILKLKPCLYKKR  325 (325)
T ss_pred             c------cHHHHHHHHHHcCCeeeehhhhcceEEEEEEecCCc--ccccccchhhccchhhccC
Confidence            6      567899999999999999999999999999999874  2222111235899999998

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=100.00  E-value=8.3e-46  Score=311.53  Aligned_cols=216  Identities=59%  Similarity=1.014  Sum_probs=164.3

Q ss_pred             HHHHHHccccccccceeccccccCCcHHHHHHHhcChhhHHHHHHhHHhhhccCCCcHHHHHHHHhhccCCCCEEEEEcC
Q 022592           71 FLDKMRARLSGGHFRMLNEKLYTCTGKEALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIVKWLKDHSPSLVIADFGC  150 (294)
Q Consensus        71 ~~~~m~~~l~~~~fr~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~VLDiGc  150 (294)
                      +++.|+.+|.|++||++|+++|++.++++.++|.++++.|+.||+||+.+...||.+|++.++++|...++...|.|+||
T Consensus         2 L~~~m~~kL~gsrFR~lNE~LYT~~s~~A~~lf~~dP~~F~~YH~Gfr~Qv~~WP~nPvd~iI~~l~~~~~~~viaD~GC   81 (219)
T PF05148_consen    2 LQEKMREKLSGSRFRWLNEQLYTTSSEEALKLFQEDPELFDIYHEGFRQQVKKWPVNPVDVIIEWLKKRPKSLVIADFGC   81 (219)
T ss_dssp             ------HHHHHHHHHHHHHHHHHS-HHHHHHHHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHHHHHCTS-TTS-EEEES-
T ss_pred             hHHHHHHHcccCchHHHHHhHhcCCHHHHHHHHHhCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCEEEEECCC
Confidence            67899999999999999999999999999999999999999999999999999999999999999998866779999999


Q ss_pred             cccHHHHHhcc--ceEEEeccCCCCcEEEccCCCCCCCCCCccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEeecC
Q 022592          151 GDARLAKSVKN--KVFSFDLVSNDPSVIACDMSNTPLNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVKS  228 (294)
Q Consensus       151 G~G~~~~~l~~--~v~gvD~s~~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e~~~  228 (294)
                      |.+.++..+..  .|+.+|+...+..++.||+.++|++++++|++|+|.+|+.+|+..++.|+.|+|||||.|+|+|+.+
T Consensus        82 GdA~la~~~~~~~~V~SfDLva~n~~Vtacdia~vPL~~~svDv~VfcLSLMGTn~~~fi~EA~RvLK~~G~L~IAEV~S  161 (219)
T PF05148_consen   82 GDAKLAKAVPNKHKVHSFDLVAPNPRVTACDIANVPLEDESVDVAVFCLSLMGTNWPDFIREANRVLKPGGILKIAEVKS  161 (219)
T ss_dssp             TT-HHHHH--S---EEEEESS-SSTTEEES-TTS-S--TT-EEEEEEES---SS-HHHHHHHHHHHEEEEEEEEEEEEGG
T ss_pred             chHHHHHhcccCceEEEeeccCCCCCEEEecCccCcCCCCceeEEEEEhhhhCCCcHHHHHHHHheeccCcEEEEEEecc
Confidence            99999998874  5999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHCCCeEEEEeccCCeEEEEEEEECCccccccccCCCCcccccccccC
Q 022592          229 RFDPNTGGADPNKFSKAVCDLGFAPVSKDFSNKMFIMFYFKKKEKQNSKSKEIQWPELKPCLYKRR  294 (294)
Q Consensus       229 ~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~f~~i~~~k~~~~~~~~~~~~~~~~~~~~~~~~  294 (294)
                      +|.      +.+.+.+.++..||++...+.++.+|+++.|+|.+....+ ... |..|+||+||||
T Consensus       162 Rf~------~~~~F~~~~~~~GF~~~~~d~~n~~F~~f~F~K~~~~~~~-~~~-~~~LkPClYKkR  219 (219)
T PF05148_consen  162 RFE------NVKQFIKALKKLGFKLKSKDESNKHFVLFEFKKIRKKEPK-KKP-GLKLKPCLYKKR  219 (219)
T ss_dssp             G-S-------HHHHHHHHHCTTEEEEEEE--STTEEEEEEEE-SSS-TT-----GG----------
T ss_pred             cCc------CHHHHHHHHHHCCCeEEecccCCCeEEEEEEEEcCccccc-ccC-CcccccCCccCC
Confidence            997      6799999999999999999999999999999998855442 333 889999999998

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.86  E-value=1.3e-20  Score=164.56  Aligned_cols=155  Identities=21%  Similarity=0.351  Sum_probs=118.1

Q ss_pred             HHHHHHHhcChhhHHHHHHhHHhhhccCCCcHHHHHHHHhhccCCCCEEEEEcCcccHHHHHhc-----cceEEEeccC-
Q 022592           97 KEALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS-  170 (294)
Q Consensus        97 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~-  170 (294)
                      +.....|+..+..||....-++-   +.....-+.++..+... ++.+|||||||||.++..++     .+|+|+|+|+ 
T Consensus        11 ~~v~~vF~~ia~~YD~~n~~~S~---g~~~~Wr~~~i~~~~~~-~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~   86 (238)
T COG2226          11 EKVQKVFDKVAKKYDLMNDLMSF---GLHRLWRRALISLLGIK-PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISES   86 (238)
T ss_pred             HHHHHHHHhhHHHHHhhcccccC---cchHHHHHHHHHhhCCC-CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHH
Confidence            45556777777777775532211   11111123345555444 78899999999999999887     3899999998 


Q ss_pred             --------------CCCcEEEccCCCCCCCCCCccEEEEcccccCC-CHHHHHHHHHHhcCcCcEEEEEeecCCCCCCC-
Q 022592          171 --------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGI-NFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNT-  234 (294)
Q Consensus       171 --------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~-~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~-  234 (294)
                                    .+++|+.+|++++||++++||+|+++++|+++ +++.+|+|++|+|||||.+++.|+.....+.. 
T Consensus        87 ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~  166 (238)
T COG2226          87 MLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLR  166 (238)
T ss_pred             HHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCCCchhhH
Confidence                          23789999999999999999999999999994 99999999999999999999998654211100 


Q ss_pred             -------------------C---------------CCCHHHHHHHHHHCCCeEEE
Q 022592          235 -------------------G---------------GADPNKFSKAVCDLGFAPVS  255 (294)
Q Consensus       235 -------------------~---------------~~~~~~~~~~l~~~Gf~~~~  255 (294)
                                         .               ..+.+++..+++++||..+.
T Consensus       167 ~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p~~~~l~~~~~~~gf~~i~  221 (238)
T COG2226         167 KAYILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFPDQEELKQMIEKAGFEEVR  221 (238)
T ss_pred             HHHHHHHHHhHhhhhceeeecChHHHHHHHHHHHhCCCHHHHHHHHHhcCceEEe
Confidence                               0               05788999999999999877

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.83  E-value=1.2e-20  Score=165.60  Aligned_cols=153  Identities=22%  Similarity=0.348  Sum_probs=73.3

Q ss_pred             HHHHHHhcChhhHHHHHHhHHhh-hccCCCcHHHHHHHHhhccCCCCEEEEEcCcccHHHHHhc------cceEEEeccC
Q 022592           98 EALDYFNENPALFDMYHSGYQEQ-MSHWPELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS  170 (294)
Q Consensus        98 ~~~~~~~~~~~~~d~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~  170 (294)
                      .....|+..+..||....-..-. ...|..    .+++.+... ++.+|||+|||||.++..++      ..|+|+|+|+
T Consensus         8 ~v~~~Fd~ia~~YD~~n~~ls~g~~~~wr~----~~~~~~~~~-~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~   82 (233)
T PF01209_consen    8 YVRKMFDRIAPRYDRMNDLLSFGQDRRWRR----KLIKLLGLR-PGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISP   82 (233)
T ss_dssp             -----------------------------S----HHHHHHT---S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-H
T ss_pred             HHHHHHHHHHHHhCCCccccCCcHHHHHHH----HHHhccCCC-CCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCH
Confidence            34467777777777755432211 123333    344444333 67799999999999988775      3789999998


Q ss_pred             ---------------CCCcEEEccCCCCCCCCCCccEEEEcccccC-CCHHHHHHHHHHhcCcCcEEEEEeecCC-----
Q 022592          171 ---------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMG-INFPNYLQEAQRVLKPSGWLLIAEVKSR-----  229 (294)
Q Consensus       171 ---------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~-~~~~~~l~el~r~LkpgG~l~i~e~~~~-----  229 (294)
                                     .+++++++|++++|+++++||+|+++++|++ .|+..+++|++|+|||||.++|.|+...     
T Consensus        83 ~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~  162 (233)
T PF01209_consen   83 GMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSKPRNPLL  162 (233)
T ss_dssp             HHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-SSHHH
T ss_pred             HHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccCCCCchh
Confidence                           3788999999999999999999999999998 5999999999999999999999985531     


Q ss_pred             ----------CCCCC-------------------CCCCHHHHHHHHHHCCCeEEE
Q 022592          230 ----------FDPNT-------------------GGADPNKFSKAVCDLGFAPVS  255 (294)
Q Consensus       230 ----------~~~~~-------------------~~~~~~~~~~~l~~~Gf~~~~  255 (294)
                                +.|..                   ...+.+++.++|+++||+.+.
T Consensus       163 ~~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~f~~~~~~~~~l~~~Gf~~v~  217 (233)
T PF01209_consen  163 RALYKFYFKYILPLIGRLLSGDREAYRYLPESIRRFPSPEELKELLEEAGFKNVE  217 (233)
T ss_dssp             HHHHHH-------------------------------------------------
T ss_pred             hceeeeeeccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                      01100                   014778999999999998766

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.81  E-value=1.2e-18  Score=155.89  Aligned_cols=166  Identities=20%  Similarity=0.266  Sum_probs=118.4

Q ss_pred             HHHHHHhcChhhHHHHHHhHHhhhccCCCcHHHHH-HHHhhccCCCCEEEEEcCcccHHHHHhc------cceEEEeccC
Q 022592           98 EALDYFNENPALFDMYHSGYQEQMSHWPELPVNII-VKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS  170 (294)
Q Consensus        98 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~  170 (294)
                      ...+.|+..+..||.....+...    ....+..+ +..+. ..++.+|||||||+|.++..++      ..|+|+|+|+
T Consensus        34 ~v~~~f~~~A~~YD~~~~~~s~g----~~~~~r~~~~~~~~-~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~  108 (261)
T PLN02233         34 ERQALFNRIAPVYDNLNDLLSLG----QHRIWKRMAVSWSG-AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSS  108 (261)
T ss_pred             HHHHHHHHhhhHHHHhhhhhcCC----hhHHHHHHHHHHhC-CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCH
Confidence            34467777777777643211000    01122322 33333 3367799999999999887765      2799999997


Q ss_pred             C------------------CCcEEEccCCCCCCCCCCccEEEEcccccCC-CHHHHHHHHHHhcCcCcEEEEEeecCCCC
Q 022592          171 N------------------DPSVIACDMSNTPLNSSSVDVAVFCLSLMGI-NFPNYLQEAQRVLKPSGWLLIAEVKSRFD  231 (294)
Q Consensus       171 ~------------------~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~-~~~~~l~el~r~LkpgG~l~i~e~~~~~~  231 (294)
                      .                  ++.++++|+.++|+++++||+|+++++++|. ++..+++++.|+|||||.+++.++.....
T Consensus       109 ~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~  188 (261)
T PLN02233        109 EQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKSTQ  188 (261)
T ss_pred             HHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCCCCc
Confidence            1                  4678999999999999999999999999985 89999999999999999999998654211


Q ss_pred             C----------------------C-----------CCCCCHHHHHHHHHHCCCeEEEEe-ccCCeEEEEEE
Q 022592          232 P----------------------N-----------TGGADPNKFSKAVCDLGFAPVSKD-FSNKMFIMFYF  268 (294)
Q Consensus       232 ~----------------------~-----------~~~~~~~~~~~~l~~~Gf~~~~~~-~~~~~f~~i~~  268 (294)
                      +                      .           ...++.+++.++|+++||+++... ......++++.
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~~f~s~~el~~ll~~aGF~~~~~~~~~~g~~~~~~~  259 (261)
T PLN02233        189 PFTTSMQEWMIDNVVVPVATGYGLAKEYEYLKSSINEYLTGEELEKLALEAGFSSAKHYEISGGLMGNLVA  259 (261)
T ss_pred             HHHHHHHHHHHhhhhhHHHHHhCChHHHHHHHHHHHhcCCHHHHHHHHHHCCCCEEEEEEcCCCeeEEEEE
Confidence            0                      0           112588999999999999987743 34444444444

>PLN02244 tocopherol O-methyltransferase

Probab=99.75  E-value=4e-17  Score=151.32  Aligned_cols=119  Identities=21%  Similarity=0.267  Sum_probs=98.2

Q ss_pred             CCCEEEEEcCcccHHHHHhc----cceEEEeccC----------------CCCcEEEccCCCCCCCCCCccEEEEccccc
Q 022592          141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLM  200 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~----------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~  200 (294)
                      ++.+|||||||+|.++..++    ..|+|+|+|+                .++.++++|+.++|+++++||+|++..+++
T Consensus       118 ~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~~  197 (340)
T PLN02244        118 RPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESGE  197 (340)
T ss_pred             CCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCchh
Confidence            56799999999999988776    3899999997                257899999999999999999999999999


Q ss_pred             CC-CHHHHHHHHHHhcCcCcEEEEEeecCCCC-CC--------------------C-CCCCHHHHHHHHHHCCCeEEEEe
Q 022592          201 GI-NFPNYLQEAQRVLKPSGWLLIAEVKSRFD-PN--------------------T-GGADPNKFSKAVCDLGFAPVSKD  257 (294)
Q Consensus       201 ~~-~~~~~l~el~r~LkpgG~l~i~e~~~~~~-~~--------------------~-~~~~~~~~~~~l~~~Gf~~~~~~  257 (294)
                      |. +...+++++.|+|+|||.|+++++..... +.                    . ...+.+++..+++++||.++...
T Consensus       198 h~~d~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~aGf~~v~~~  277 (340)
T PLN02244        198 HMPDKRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESLGLQDIKTE  277 (340)
T ss_pred             ccCCHHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHCCCCeeEee
Confidence            95 89999999999999999999987543211 10                    0 01378899999999999998855


Q ss_pred             cc
Q 022592          258 FS  259 (294)
Q Consensus       258 ~~  259 (294)
                      ..
T Consensus       278 d~  279 (340)
T PLN02244        278 DW  279 (340)
T ss_pred             eC
Confidence            43

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.73  E-value=1.4e-16  Score=139.66  Aligned_cols=169  Identities=17%  Similarity=0.217  Sum_probs=119.4

Q ss_pred             HHHHHHhcChhhHHHHHHhHHhhhccCCCcHHHHHHHHhhccCCCCEEEEEcCcccHHHHHhc------cceEEEeccC-
Q 022592           98 EALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS-  170 (294)
Q Consensus        98 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~-  170 (294)
                      ....+|+..+..||.....+.   ..........++..+... ++.+|||+|||+|.++..++      ..|+|+|+++ 
T Consensus         6 ~~~~~f~~~a~~yd~~~~~~~---~~~~~~~~~~~l~~l~~~-~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~   81 (231)
T TIGR02752         6 RVHKVFEKIYKKYDRMNSVIS---FQRHKKWRKDTMKRMNVQ-AGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSEN   81 (231)
T ss_pred             HHHHHHHHhhhHHhHHHHHhc---CCchHHHHHHHHHhcCCC-CCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHH
Confidence            344567666777776432210   001111123455555433 56799999999999887765      3789999986 


Q ss_pred             --------------CCCcEEEccCCCCCCCCCCccEEEEcccccC-CCHHHHHHHHHHhcCcCcEEEEEeecCCCC----
Q 022592          171 --------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMG-INFPNYLQEAQRVLKPSGWLLIAEVKSRFD----  231 (294)
Q Consensus       171 --------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~-~~~~~~l~el~r~LkpgG~l~i~e~~~~~~----  231 (294)
                                    .++.++.+|+..+++++++||+|++..++++ .++..++.++.++|+|||.+++.+......    
T Consensus        82 ~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~  161 (231)
T TIGR02752        82 MLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQPTIPGFK  161 (231)
T ss_pred             HHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEECCCCCChHHH
Confidence                          2567889999998888899999999999988 488999999999999999999876432110    


Q ss_pred             -----------CC-------------------CCCCCHHHHHHHHHHCCCeEEEEe-ccCCeEEEEEEEE
Q 022592          232 -----------PN-------------------TGGADPNKFSKAVCDLGFAPVSKD-FSNKMFIMFYFKK  270 (294)
Q Consensus       232 -----------~~-------------------~~~~~~~~~~~~l~~~Gf~~~~~~-~~~~~f~~i~~~k  270 (294)
                                 +.                   ...++.+++..+|+++||.++++. ......++++.+|
T Consensus       162 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~g~~~~~~~~~  231 (231)
T TIGR02752       162 QLYFFYFKYIMPLFGKLFAKSYKEYSWLQESTRDFPGMDELAEMFQEAGFKDVEVKSYTGGVAAMHMGFK  231 (231)
T ss_pred             HHHHHHHcChhHHhhHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCeeEEEEcccceEEEEEEEC
Confidence                       00                   011467889999999999988744 3446666666654

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=99.73  E-value=5.2e-17  Score=140.27  Aligned_cols=163  Identities=20%  Similarity=0.279  Sum_probs=119.4

Q ss_pred             HHHHHhcChhhHHHHHHhHHhhhccCCCcHHHHHHHHhhccCCCCEEEEEcCcccHHHHHhc-----------cceEEEe
Q 022592           99 ALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK-----------NKVFSFD  167 (294)
Q Consensus        99 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~-----------~~v~gvD  167 (294)
                      ....|...+..||.....+.-   +-.+-.-+.++..+... .++++||++||||..+..+.           .+|+++|
T Consensus        62 V~~vF~~vA~~YD~mND~mSl---GiHRlWKd~~v~~L~p~-~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~D  137 (296)
T KOG1540|consen   62 VHHVFESVAKKYDIMNDAMSL---GIHRLWKDMFVSKLGPG-KGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLD  137 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHhhc---chhHHHHHHhhhccCCC-CCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEe
Confidence            345666666667665543321   11111124455666554 66899999999999887764           3799999


Q ss_pred             ccC------------------CCCcEEEccCCCCCCCCCCccEEEEcccccC-CCHHHHHHHHHHhcCcCcEEEEEeecC
Q 022592          168 LVS------------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMG-INFPNYLQEAQRVLKPSGWLLIAEVKS  228 (294)
Q Consensus       168 ~s~------------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~-~~~~~~l~el~r~LkpgG~l~i~e~~~  228 (294)
                      +++                  ..+.|+++|++.+||++++||+.++.+.|.. ++++++|+|++|+|||||++.+.++..
T Consensus       138 inp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFsk  217 (296)
T KOG1540|consen  138 INPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSK  217 (296)
T ss_pred             CCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEccc
Confidence            998                  2378999999999999999999999999997 699999999999999999999998654


Q ss_pred             CCCC---------------C-------------------CCCCCHHHHHHHHHHCCCeEEEEeccCCeEEEE
Q 022592          229 RFDP---------------N-------------------TGGADPNKFSKAVCDLGFAPVSKDFSNKMFIMF  266 (294)
Q Consensus       229 ~~~~---------------~-------------------~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~f~~i  266 (294)
                      ...+               .                   ....+.+++..+++++||..+. .+.+..|.++
T Consensus       218 v~~~~l~~fy~~ysf~VlpvlG~~iagd~~sYqYLveSI~rfp~qe~f~~miedaGF~~~~-~ye~lt~Gv~  288 (296)
T KOG1540|consen  218 VENEPLKWFYDQYSFDVLPVLGEIIAGDRKSYQYLVESIRRFPPQEEFASMIEDAGFSSVN-GYENLTFGVV  288 (296)
T ss_pred             cccHHHHHHHHhhhhhhhchhhHhhhhhHhhhhhHHhhhhcCCCHHHHHHHHHHcCCcccc-ccccceeeee
Confidence            2210               0                   0114778999999999998886 3444455433

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.72  E-value=6.5e-17  Score=148.15  Aligned_cols=116  Identities=14%  Similarity=0.222  Sum_probs=97.7

Q ss_pred             CCCEEEEEcCcccHHHHHhc---cceEEEeccC----------------CCCcEEEccCCCCCCCCCCccEEEEcccccC
Q 022592          141 PSLVIADFGCGDARLAKSVK---NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMG  201 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~----------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~  201 (294)
                      ++.+|||||||+|.++..++   ..|+|+|+++                .++.++++|++++++++++||+|++..+|+|
T Consensus       131 ~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLeH  210 (322)
T PLN02396        131 EGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIEH  210 (322)
T ss_pred             CCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHHh
Confidence            45689999999999988887   3899999996                1567889999888888889999999999999


Q ss_pred             C-CHHHHHHHHHHhcCcCcEEEEEeecCCC----------------CCC-----CCCCCHHHHHHHHHHCCCeEEEE
Q 022592          202 I-NFPNYLQEAQRVLKPSGWLLIAEVKSRF----------------DPN-----TGGADPNKFSKAVCDLGFAPVSK  256 (294)
Q Consensus       202 ~-~~~~~l~el~r~LkpgG~l~i~e~~~~~----------------~~~-----~~~~~~~~~~~~l~~~Gf~~~~~  256 (294)
                      . ++..++.++.++|||||.+++..++...                .+.     ...++++++..+|+++||+++++
T Consensus       211 v~d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~~  287 (322)
T PLN02396        211 VANPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVKEM  287 (322)
T ss_pred             cCCHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEEE
Confidence            5 9999999999999999999998755421                111     12368999999999999999874

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.70  E-value=1.2e-16  Score=142.99  Aligned_cols=131  Identities=15%  Similarity=0.169  Sum_probs=104.1

Q ss_pred             HHHHHHHhhccCCCCEEEEEcCcccHHHHHhc----cceEEEeccC-------------CCCcEEEccCCCCCCCCCCcc
Q 022592          129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS-------------NDPSVIACDMSNTPLNSSSVD  191 (294)
Q Consensus       129 ~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~-------------~~~~~~~~d~~~lp~~~~~fD  191 (294)
                      ...++..+... ++.+|||||||+|..+..++    ..|+|+|+|+             .++.+..+|+...|+++++||
T Consensus        41 ~~~~l~~l~l~-~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~FD  119 (263)
T PTZ00098         41 TTKILSDIELN-ENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTFD  119 (263)
T ss_pred             HHHHHHhCCCC-CCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCeE
Confidence            45566666444 67799999999999887775    3899999997             257788999999899899999


Q ss_pred             EEEEcccccCC---CHHHHHHHHHHhcCcCcEEEEEeecCCCCC-------------CCCCCCHHHHHHHHHHCCCeEEE
Q 022592          192 VAVFCLSLMGI---NFPNYLQEAQRVLKPSGWLLIAEVKSRFDP-------------NTGGADPNKFSKAVCDLGFAPVS  255 (294)
Q Consensus       192 ~Vi~~~~l~~~---~~~~~l~el~r~LkpgG~l~i~e~~~~~~~-------------~~~~~~~~~~~~~l~~~Gf~~~~  255 (294)
                      +|++..+++|.   ++..++++++++|+|||.|++.++......             .....+.+++..+|+++||.++.
T Consensus       120 ~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~  199 (263)
T PTZ00098        120 MIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKAYIKKRKYTLIPIQEYGDLIKSCNFQNVV  199 (263)
T ss_pred             EEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCeee
Confidence            99999888884   678999999999999999999876432110             11225889999999999999988


Q ss_pred             EeccC
Q 022592          256 KDFSN  260 (294)
Q Consensus       256 ~~~~~  260 (294)
                      .....
T Consensus       200 ~~d~~  204 (263)
T PTZ00098        200 AKDIS  204 (263)
T ss_pred             EEeCc
Confidence            55433

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.69  E-value=3.1e-16  Score=144.19  Aligned_cols=128  Identities=15%  Similarity=0.132  Sum_probs=100.6

Q ss_pred             HHHHHHhhccCCCCEEEEEcCcccHHHHHhc----cceEEEeccC----------------CCCcEEEccCCCCCCCCCC
Q 022592          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSS  189 (294)
Q Consensus       130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~----------------~~~~~~~~d~~~lp~~~~~  189 (294)
                      ..++..+... .+.+|||||||+|.++..++    ..|+|+|+|+                .++.++.+|++++|+ +++
T Consensus       112 ~~l~~~l~~l-~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~  189 (322)
T PRK15068        112 DRVLPHLSPL-KGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKA  189 (322)
T ss_pred             HHHHHhhCCC-CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCC
Confidence            4455666544 56799999999999988776    3699999987                146788999999998 788


Q ss_pred             ccEEEEcccccCC-CHHHHHHHHHHhcCcCcEEEEEeecCCC------CCCC---------CCCCHHHHHHHHHHCCCeE
Q 022592          190 VDVAVFCLSLMGI-NFPNYLQEAQRVLKPSGWLLIAEVKSRF------DPNT---------GGADPNKFSKAVCDLGFAP  253 (294)
Q Consensus       190 fD~Vi~~~~l~~~-~~~~~l~el~r~LkpgG~l~i~e~~~~~------~~~~---------~~~~~~~~~~~l~~~Gf~~  253 (294)
                      ||+|++..+++|. ++..++.+++++|+|||.+++..+....      .+..         ...+..++..+|+++||++
T Consensus       190 FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~aGF~~  269 (322)
T PRK15068        190 FDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERAGFKD  269 (322)
T ss_pred             cCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHHHHcCCce
Confidence            9999999999994 8999999999999999999986532110      0100         0137889999999999999


Q ss_pred             EEEecc
Q 022592          254 VSKDFS  259 (294)
Q Consensus       254 ~~~~~~  259 (294)
                      +.+...
T Consensus       270 i~~~~~  275 (322)
T PRK15068        270 VRIVDV  275 (322)
T ss_pred             EEEEeC
Confidence            886543

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.69  E-value=4.7e-16  Score=138.58  Aligned_cols=125  Identities=21%  Similarity=0.260  Sum_probs=97.7

Q ss_pred             HHHHHhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccC----------------CCCcEEEccCCCCC-CCCCCc
Q 022592          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS----------------NDPSVIACDMSNTP-LNSSSV  190 (294)
Q Consensus       131 ~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~----------------~~~~~~~~d~~~lp-~~~~~f  190 (294)
                      .+++.+.  ..+.+|||||||+|.++..++   ..|+|+|+|+                .++.++++|+.+++ +.+++|
T Consensus        36 ~~l~~l~--~~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~f  113 (255)
T PRK11036         36 RLLAELP--PRPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPV  113 (255)
T ss_pred             HHHHhcC--CCCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCC
Confidence            3444444  245699999999999998887   4899999997                24678888887764 567899


Q ss_pred             cEEEEcccccCC-CHHHHHHHHHHhcCcCcEEEEEeecCCC-------------------------CCCCCCCCHHHHHH
Q 022592          191 DVAVFCLSLMGI-NFPNYLQEAQRVLKPSGWLLIAEVKSRF-------------------------DPNTGGADPNKFSK  244 (294)
Q Consensus       191 D~Vi~~~~l~~~-~~~~~l~el~r~LkpgG~l~i~e~~~~~-------------------------~~~~~~~~~~~~~~  244 (294)
                      |+|++..+++|. ++..++.++.++|+|||.+++..++...                         ......++++++..
T Consensus       114 D~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~  193 (255)
T PRK11036        114 DLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDPEQVYQ  193 (255)
T ss_pred             CEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCCCCCCHHHHHH
Confidence            999999999995 8999999999999999999987543210                         00112368899999


Q ss_pred             HHHHCCCeEEEEe
Q 022592          245 AVCDLGFAPVSKD  257 (294)
Q Consensus       245 ~l~~~Gf~~~~~~  257 (294)
                      +|+++||+++...
T Consensus       194 ~l~~aGf~~~~~~  206 (255)
T PRK11036        194 WLEEAGWQIMGKT  206 (255)
T ss_pred             HHHHCCCeEeeee
Confidence            9999999998744

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.68  E-value=2e-16  Score=130.08  Aligned_cols=124  Identities=21%  Similarity=0.393  Sum_probs=97.7

Q ss_pred             HHHHhhc-cCCCCEEEEEcCcccHHHHHhc---cceEEEeccCC-----CCcEEEccCCCCCCCCCCccEEEEcccccCC
Q 022592          132 IVKWLKD-HSPSLVIADFGCGDARLAKSVK---NKVFSFDLVSN-----DPSVIACDMSNTPLNSSSVDVAVFCLSLMGI  202 (294)
Q Consensus       132 ~~~~l~~-~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~~-----~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~  202 (294)
                      ++..+.. ..++.+|||||||+|.++..++   .+++|+|+++.     .......+....+.++++||+|+++.+|+|.
T Consensus        12 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~   91 (161)
T PF13489_consen   12 LLERLLPRLKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEKRNVVFDNFDAQDPPFPDGSFDLIICNDVLEHL   91 (161)
T ss_dssp             HHHHHHTCTTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHHTTSEEEEEECHTHHCHSSSEEEEEEESSGGGS
T ss_pred             HHHHHhcccCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhhhhhhhhhhhhhhhhccccchhhHhhHHHHhhc
Confidence            3443432 3467899999999999999887   38999999984     3444444455566678899999999999996


Q ss_pred             -CHHHHHHHHHHhcCcCcEEEEEeecCC---------C-C-----CCCCCCCHHHHHHHHHHCCCeEEE
Q 022592          203 -NFPNYLQEAQRVLKPSGWLLIAEVKSR---------F-D-----PNTGGADPNKFSKAVCDLGFAPVS  255 (294)
Q Consensus       203 -~~~~~l~el~r~LkpgG~l~i~e~~~~---------~-~-----~~~~~~~~~~~~~~l~~~Gf~~~~  255 (294)
                       ++..+++++.++|+|||++++.+....         + .     .....++.+++..+++++||++++
T Consensus        92 ~d~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv~  160 (161)
T PF13489_consen   92 PDPEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIVE  160 (161)
T ss_dssp             SHHHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred             ccHHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEEE
Confidence             899999999999999999999986532         1 1     112337999999999999999985

...

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.68  E-value=1e-15  Score=135.97  Aligned_cols=146  Identities=18%  Similarity=0.268  Sum_probs=108.0

Q ss_pred             HHHHHhcChhhHHHHHHhHHhhhccCCCcHHHHHHHHhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccCC----
Q 022592           99 ALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVSN----  171 (294)
Q Consensus        99 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~~----  171 (294)
                      ....|+..+..|+.+....        ......+++.+... +..+|||+|||+|.++..++   ..|+|+|+|+.    
T Consensus         9 i~~~F~~aa~~Y~~~~~~q--------~~~a~~l~~~l~~~-~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~   79 (251)
T PRK10258          9 IAAAFGRAAAHYEQHAELQ--------RQSADALLAMLPQR-KFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQ   79 (251)
T ss_pred             HHHHHHHHHHhHhHHHHHH--------HHHHHHHHHhcCcc-CCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHH
Confidence            3345555556665532211        11224455666543 45689999999999988776   48999999982    


Q ss_pred             ------CCcEEEccCCCCCCCCCCccEEEEcccccCC-CHHHHHHHHHHhcCcCcEEEEEeecCCC--------------
Q 022592          172 ------DPSVIACDMSNTPLNSSSVDVAVFCLSLMGI-NFPNYLQEAQRVLKPSGWLLIAEVKSRF--------------  230 (294)
Q Consensus       172 ------~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~-~~~~~l~el~r~LkpgG~l~i~e~~~~~--------------  230 (294)
                            ...++++|++.+|+++++||+|+++.+++|. ++..++.++.++|+|||.++++.+....              
T Consensus        80 a~~~~~~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~el~~~~~~~~~~  159 (251)
T PRK10258         80 ARQKDAADHYLAGDIESLPLATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQGSLPELHQAWQAVDER  159 (251)
T ss_pred             HHhhCCCCCEEEcCcccCcCCCCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCCCchHHHHHHHHHhccC
Confidence                  3468899999999999999999999999984 8999999999999999999998654321              


Q ss_pred             CCCCCCCCHHHHHHHHHHCCCeE
Q 022592          231 DPNTGGADPNKFSKAVCDLGFAP  253 (294)
Q Consensus       231 ~~~~~~~~~~~~~~~l~~~Gf~~  253 (294)
                      ......++.+++..++...|+..
T Consensus       160 ~~~~~~~~~~~l~~~l~~~~~~~  182 (251)
T PRK10258        160 PHANRFLPPDAIEQALNGWRYQH  182 (251)
T ss_pred             CccccCCCHHHHHHHHHhCCcee
Confidence            11223468899999999888754

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.67  E-value=1.6e-15  Score=135.21  Aligned_cols=125  Identities=14%  Similarity=0.235  Sum_probs=98.1

Q ss_pred             HHHHHHHhhccCCCCEEEEEcCcccHHHHHhc-----cceEEEeccC--------CCCcEEEccCCCCCCCCCCccEEEE
Q 022592          129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS--------NDPSVIACDMSNTPLNSSSVDVAVF  195 (294)
Q Consensus       129 ~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~--------~~~~~~~~d~~~lp~~~~~fD~Vi~  195 (294)
                      ...+++.+... ++.+|||||||+|.++..++     ..|+|+|+|+        .++.++.+|+..++ ++++||+|++
T Consensus        18 ~~~ll~~l~~~-~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~-~~~~fD~v~~   95 (255)
T PRK14103         18 FYDLLARVGAE-RARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARERGVDARTGDVRDWK-PKPDTDVVVS   95 (255)
T ss_pred             HHHHHHhCCCC-CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhcCCcEEEcChhhCC-CCCCceEEEE
Confidence            34566666544 56799999999999998886     3799999998        46789999998775 5678999999


Q ss_pred             cccccCC-CHHHHHHHHHHhcCcCcEEEEEeecC----------------CCCC---------CCCCCCHHHHHHHHHHC
Q 022592          196 CLSLMGI-NFPNYLQEAQRVLKPSGWLLIAEVKS----------------RFDP---------NTGGADPNKFSKAVCDL  249 (294)
Q Consensus       196 ~~~l~~~-~~~~~l~el~r~LkpgG~l~i~e~~~----------------~~~~---------~~~~~~~~~~~~~l~~~  249 (294)
                      +.++||. ++..++.+++++|+|||.+++.....                .+..         .....+.+.+..+|+++
T Consensus        96 ~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~a  175 (255)
T PRK14103         96 NAALQWVPEHADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGYAELLTDA  175 (255)
T ss_pred             ehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCcCCCCHHHHHHHHHhC
Confidence            9999995 88999999999999999999863211                0110         01124789999999999


Q ss_pred             CCeEEE
Q 022592          250 GFAPVS  255 (294)
Q Consensus       250 Gf~~~~  255 (294)
                      ||.+..
T Consensus       176 Gf~v~~  181 (255)
T PRK14103        176 GCKVDA  181 (255)
T ss_pred             CCeEEE
Confidence            998654

>TIGR00452 methyltransferase, putative

Probab=99.67  E-value=1.1e-15  Score=139.48  Aligned_cols=127  Identities=13%  Similarity=0.085  Sum_probs=96.9

Q ss_pred             HHHHHHhhccCCCCEEEEEcCcccHHHHHhc----cceEEEeccC----------------CCCcEEEccCCCCCCCCCC
Q 022592          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSS  189 (294)
Q Consensus       130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~----------------~~~~~~~~d~~~lp~~~~~  189 (294)
                      ..++..+... ++.+|||||||+|.++..++    ..|+|+|+|+                .++.+..++++++|.. .+
T Consensus       111 ~~~l~~l~~~-~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~-~~  188 (314)
T TIGR00452       111 DRVLPHLSPL-KGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL-YA  188 (314)
T ss_pred             HHHHHhcCCC-CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC-CC
Confidence            3455555444 56799999999999877665    3699999987                1345677888888764 47


Q ss_pred             ccEEEEcccccCC-CHHHHHHHHHHhcCcCcEEEEEeecC--CCC----CC---------CCCCCHHHHHHHHHHCCCeE
Q 022592          190 VDVAVFCLSLMGI-NFPNYLQEAQRVLKPSGWLLIAEVKS--RFD----PN---------TGGADPNKFSKAVCDLGFAP  253 (294)
Q Consensus       190 fD~Vi~~~~l~~~-~~~~~l~el~r~LkpgG~l~i~e~~~--~~~----~~---------~~~~~~~~~~~~l~~~Gf~~  253 (294)
                      ||+|++..+|+|. ++..++.+++++|+|||.|++.++.-  ...    +.         ...++..++..+|+++||+.
T Consensus       189 FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~aGF~~  268 (314)
T TIGR00452       189 FDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVGFEN  268 (314)
T ss_pred             cCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHHHHHHCCCeE
Confidence            9999999999995 89999999999999999999865321  110    00         01248899999999999999


Q ss_pred             EEEec
Q 022592          254 VSKDF  258 (294)
Q Consensus       254 ~~~~~  258 (294)
                      +++..
T Consensus       269 V~i~~  273 (314)
T TIGR00452       269 FRILD  273 (314)
T ss_pred             EEEEe
Confidence            88544

Known examples to date are restricted to the proteobacteria.

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.65  E-value=1.3e-14  Score=127.12  Aligned_cols=169  Identities=21%  Similarity=0.349  Sum_probs=119.8

Q ss_pred             HHHHHHhcChhhHHHHHHhHHhhhccCCCcHHHHHHHHhhccCCCCEEEEEcCcccHHHHHhc------cceEEEeccC-
Q 022592           98 EALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS-  170 (294)
Q Consensus        98 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~-  170 (294)
                      ....+|+..+..|+.++...   ...........++..+... ++.+|||+|||+|.++..++      ..++++|+++ 
T Consensus        12 ~~~~~~~~~~~~y~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~   87 (239)
T PRK00216         12 KVAEMFDSIAPKYDLMNDLL---SFGLHRVWRRKTIKWLGVR-PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEG   87 (239)
T ss_pred             HHHHHHHHhhhhHHHHHHHH---hcCCcHHHHHHHHHHhCCC-CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHH
Confidence            34456666666665433211   0111222234455555444 56799999999999887664      4789999986 


Q ss_pred             ---------------CCCcEEEccCCCCCCCCCCccEEEEcccccCC-CHHHHHHHHHHhcCcCcEEEEEeecCCCCC--
Q 022592          171 ---------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGI-NFPNYLQEAQRVLKPSGWLLIAEVKSRFDP--  232 (294)
Q Consensus       171 ---------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~-~~~~~l~el~r~LkpgG~l~i~e~~~~~~~--  232 (294)
                                     .++.+..+|+...+++.++||+|++..++++. ++..++..+.++|+|||.+++.++......  
T Consensus        88 ~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~  167 (239)
T PRK00216         88 MLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEFSKPTNPPL  167 (239)
T ss_pred             HHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEecCCCchHH
Confidence                           24678889998888777899999999999884 889999999999999999999875432110  


Q ss_pred             --------------------C------------CCCCCHHHHHHHHHHCCCeEEEEec-cCCeEEEEEEEE
Q 022592          233 --------------------N------------TGGADPNKFSKAVCDLGFAPVSKDF-SNKMFIMFYFKK  270 (294)
Q Consensus       233 --------------------~------------~~~~~~~~~~~~l~~~Gf~~~~~~~-~~~~f~~i~~~k  270 (294)
                                          .            ...++.+++..+|+++||.++.... ....+.++.++|
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~  238 (239)
T PRK00216        168 KKAYDFYLFKVLPLIGKLISKNAEAYSYLAESIRAFPDQEELAAMLEEAGFERVRYRNLTGGIVALHVGYK  238 (239)
T ss_pred             HHHHHHHHHhhhHHHHHHHcCCcHHHHHHHHHHHhCCCHHHHHHHHHhCCCceeeeeeeecCcEEEEEEec
Confidence                                0            1124678899999999999988554 556677777765

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.65  E-value=1.4e-15  Score=140.06  Aligned_cols=129  Identities=18%  Similarity=0.116  Sum_probs=99.8

Q ss_pred             HHHHhhccCCCCEEEEEcCcccHHHHHhc-----cceEEEeccC------------CCCcEEEccCCCCCCCCCCccEEE
Q 022592          132 IVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS------------NDPSVIACDMSNTPLNSSSVDVAV  194 (294)
Q Consensus       132 ~~~~l~~~~~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~------------~~~~~~~~d~~~lp~~~~~fD~Vi  194 (294)
                      +++.+....++.+|||||||+|.++..++     ..|+++|+|+            .++.++.+|++++++++++||+|+
T Consensus       104 ~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVI  183 (340)
T PLN02490        104 ALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYV  183 (340)
T ss_pred             HHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEE
Confidence            44443332356799999999999877664     3799999986            367889999999999889999999


Q ss_pred             EcccccC-CCHHHHHHHHHHhcCcCcEEEEEeecC-CC-----CC--CCCCCCHHHHHHHHHHCCCeEEEEeccC
Q 022592          195 FCLSLMG-INFPNYLQEAQRVLKPSGWLLIAEVKS-RF-----DP--NTGGADPNKFSKAVCDLGFAPVSKDFSN  260 (294)
Q Consensus       195 ~~~~l~~-~~~~~~l~el~r~LkpgG~l~i~e~~~-~~-----~~--~~~~~~~~~~~~~l~~~Gf~~~~~~~~~  260 (294)
                      ++.++++ .++..+++++.++|+|||.+++.+... .+     ..  .....+.+++.++|+++||+.+......
T Consensus       184 s~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~~i~  258 (340)
T PLN02490        184 SAGSIEYWPDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKLKRIG  258 (340)
T ss_pred             EcChhhhCCCHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEEEEcC
Confidence            9999998 488999999999999999998875321 10     00  0112478999999999999988855433

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.64  E-value=1.4e-15  Score=147.05  Aligned_cols=129  Identities=21%  Similarity=0.236  Sum_probs=102.7

Q ss_pred             HHHHHHHhhccCCCCEEEEEcCcccHHHHHhc----cceEEEeccC--------------CCCcEEEccCCCCCCCCCCc
Q 022592          129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS--------------NDPSVIACDMSNTPLNSSSV  190 (294)
Q Consensus       129 ~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~--------------~~~~~~~~d~~~lp~~~~~f  190 (294)
                      .+.+++.+.. .++.+|||||||+|.++..++    ..|+|+|+|+              .++.+..+|+...++++++|
T Consensus       255 te~l~~~~~~-~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~f  333 (475)
T PLN02336        255 TKEFVDKLDL-KPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSF  333 (475)
T ss_pred             HHHHHHhcCC-CCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCE
Confidence            3445665543 356799999999998877665    3799999996              25678899999988888899


Q ss_pred             cEEEEcccccCC-CHHHHHHHHHHhcCcCcEEEEEeecCCCCC------------CCCCCCHHHHHHHHHHCCCeEEEEe
Q 022592          191 DVAVFCLSLMGI-NFPNYLQEAQRVLKPSGWLLIAEVKSRFDP------------NTGGADPNKFSKAVCDLGFAPVSKD  257 (294)
Q Consensus       191 D~Vi~~~~l~~~-~~~~~l~el~r~LkpgG~l~i~e~~~~~~~------------~~~~~~~~~~~~~l~~~Gf~~~~~~  257 (294)
                      |+|++..+++|. ++..++.+++++|+|||.+++.++......            .....+..++.++++++||.++...
T Consensus       334 D~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~aGF~~i~~~  413 (475)
T PLN02336        334 DVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAEYIKQRGYDLHDVQAYGQMLKDAGFDDVIAE  413 (475)
T ss_pred             EEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeeeeee
Confidence            999999999995 899999999999999999999875432110            1122578899999999999998754


Q ss_pred             c
Q 022592          258 F  258 (294)
Q Consensus       258 ~  258 (294)
                      .
T Consensus       414 d  414 (475)
T PLN02336        414 D  414 (475)
T ss_pred             c
Confidence            3

>PRK05785 hypothetical protein; Provisional

Probab=99.63  E-value=4.1e-15  Score=130.25  Aligned_cols=169  Identities=14%  Similarity=0.104  Sum_probs=110.6

Q ss_pred             HHHHHHHhcChhhHHHHHHhHHhhhccCCCcHHHHHHHHhhcc-CCCCEEEEEcCcccHHHHHhc----cceEEEeccCC
Q 022592           97 KEALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIVKWLKDH-SPSLVIADFGCGDARLAKSVK----NKVFSFDLVSN  171 (294)
Q Consensus        97 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~~  171 (294)
                      +...+.|+..+..||.......   ..-.......++..+... .++.+|||||||+|.++..++    ..|+|+|+|+.
T Consensus         9 ~~v~~~f~~iA~~YD~~n~~~s---~g~~~~wr~~~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~   85 (226)
T PRK05785          9 EELQEAYNKIPKAYDRANRFIS---FNQDVRWRAELVKTILKYCGRPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAEN   85 (226)
T ss_pred             HHHHHHHHhhhHHHHHhhhhcc---CCCcHHHHHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHH
Confidence            3445677777777776442211   000111112234444321 245799999999999988776    37899999983


Q ss_pred             -------CCcEEEccCCCCCCCCCCccEEEEcccccCC-CHHHHHHHHHHhcCcCcEEEEEeecCC--------------
Q 022592          172 -------DPSVIACDMSNTPLNSSSVDVAVFCLSLMGI-NFPNYLQEAQRVLKPSGWLLIAEVKSR--------------  229 (294)
Q Consensus       172 -------~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~-~~~~~l~el~r~LkpgG~l~i~e~~~~--------------  229 (294)
                             ...++++|++.+|+++++||+|+++++++|. ++..+++++.|+|||.+  .+.++...              
T Consensus        86 Ml~~a~~~~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp~~--~ile~~~p~~~~~~~~~~~y~~  163 (226)
T PRK05785         86 MLKMNLVADDKVVGSFEALPFRDKSFDVVMSSFALHASDNIEKVIAEFTRVSRKQV--GFIAMGKPDNVIKRKYLSFYLR  163 (226)
T ss_pred             HHHHHHhccceEEechhhCCCCCCCEEEEEecChhhccCCHHHHHHHHHHHhcCce--EEEEeCCCCcHHHHHHHHHHHH
Confidence                   3457889999999999999999999999984 99999999999999942  23332210              


Q ss_pred             ---------CCCCCC-----------CCCHHHHHHHHHHCCCe-EEEEeccCCeEEEEEEEEC
Q 022592          230 ---------FDPNTG-----------GADPNKFSKAVCDLGFA-PVSKDFSNKMFIMFYFKKK  271 (294)
Q Consensus       230 ---------~~~~~~-----------~~~~~~~~~~l~~~Gf~-~~~~~~~~~~f~~i~~~k~  271 (294)
                               +.....           ..+.+++.++++++| . +.........-.+++.+|.
T Consensus       164 ~~~P~~~~~~~~~~~~Y~yl~~si~~f~~~~~~~~~~~~~~-~~~~~~~~~~G~~~~~~~~k~  225 (226)
T PRK05785        164 YIMPYIACLAGAKCRDYKYIYYIYERLPTNSFHREIFEKYA-DIKVYEERGLGLVYFVVGSSR  225 (226)
T ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHCCCHHHHHHHHHHHh-CceEEEEccccEEEEEEEeeC
Confidence                     000000           047789999999964 3 3334455555666666653

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.63  E-value=4.7e-16  Score=116.30  Aligned_cols=78  Identities=32%  Similarity=0.472  Sum_probs=67.6

Q ss_pred             EEEcCcccHHHHHhcc----ceEEEeccC------------CCCcEEEccCCCCCCCCCCccEEEEcccccCC-CHHHHH
Q 022592          146 ADFGCGDARLAKSVKN----KVFSFDLVS------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGI-NFPNYL  208 (294)
Q Consensus       146 LDiGcG~G~~~~~l~~----~v~gvD~s~------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~-~~~~~l  208 (294)
                      ||+|||+|..+..++.    .++++|+++            ..+.+..+|+..+|+++++||+|++..+++|. ++..++
T Consensus         1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~~~~~l   80 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLEDPEAAL   80 (95)
T ss_dssp             EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGSSHHHHHH
T ss_pred             CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeeccCHHHHH
Confidence            8999999999998874    699999998            24459999999999999999999999999996 899999


Q ss_pred             HHHHHhcCcCcEEEE
Q 022592          209 QEAQRVLKPSGWLLI  223 (294)
Q Consensus       209 ~el~r~LkpgG~l~i  223 (294)
                      +++.|+|||||+++|
T Consensus        81 ~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   81 REIYRVLKPGGRLVI   95 (95)
T ss_dssp             HHHHHHEEEEEEEEE
T ss_pred             HHHHHHcCcCeEEeC
Confidence            999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.62  E-value=6.4e-16  Score=137.17  Aligned_cols=130  Identities=21%  Similarity=0.233  Sum_probs=102.4

Q ss_pred             CCCEEEEEcCcccHHHHHhc-------cceEEEeccC----------------CCCcEEEccCCCCCCCCCCccEEEEcc
Q 022592          141 PSLVIADFGCGDARLAKSVK-------NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSVDVAVFCL  197 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~-------~~v~gvD~s~----------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~  197 (294)
                      ++.+|||||||+|..+..++       .+++|+|+|+                .++.++.+|+..+|++  .+|+|+++.
T Consensus        56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~~~  133 (247)
T PRK15451         56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLNF  133 (247)
T ss_pred             CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEehhh
Confidence            56799999999999876553       3799999997                2578899999888764  489999999


Q ss_pred             cccCCC---HHHHHHHHHHhcCcCcEEEEEeecCCCCC---------------------------------CCCCCCHHH
Q 022592          198 SLMGIN---FPNYLQEAQRVLKPSGWLLIAEVKSRFDP---------------------------------NTGGADPNK  241 (294)
Q Consensus       198 ~l~~~~---~~~~l~el~r~LkpgG~l~i~e~~~~~~~---------------------------------~~~~~~~~~  241 (294)
                      +++|.+   ...++++++++|+|||.|++.+......+                                 .....+.++
T Consensus       134 ~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~~~~  213 (247)
T PRK15451        134 TLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVET  213 (247)
T ss_pred             HHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCCHHH
Confidence            999864   46899999999999999999873321100                                 011148889


Q ss_pred             HHHHHHHCCCeEEEEeccCCeEEEEEEEECC
Q 022592          242 FSKAVCDLGFAPVSKDFSNKMFIMFYFKKKE  272 (294)
Q Consensus       242 ~~~~l~~~Gf~~~~~~~~~~~f~~i~~~k~~  272 (294)
                      ..++|+++||..+...+..-.|..++++|.+
T Consensus       214 ~~~~L~~aGF~~v~~~~~~~~f~~~~a~k~~  244 (247)
T PRK15451        214 HKARLHKAGFEHSELWFQCFNFGSLVALKAE  244 (247)
T ss_pred             HHHHHHHcCchhHHHHHHHHhHHHHhheecc
Confidence            9999999999998877777778778887754

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.60  E-value=1.8e-14  Score=123.63  Aligned_cols=124  Identities=19%  Similarity=0.282  Sum_probs=94.1

Q ss_pred             HHHHHHhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccC---------------CCCcEEEccCCCCCCCCCCcc
Q 022592          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVD  191 (294)
Q Consensus       130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~---------------~~~~~~~~d~~~lp~~~~~fD  191 (294)
                      ..+++.+... ++.+|||+|||+|.++..++   ..|+|+|+|+               .++.+.+.|+..++++ ++||
T Consensus        20 ~~l~~~l~~~-~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD   97 (197)
T PRK11207         20 SEVLEAVKVV-KPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFD-GEYD   97 (197)
T ss_pred             HHHHHhcccC-CCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcC-CCcC
Confidence            4566666554 45799999999999999887   3799999997               2467788888877764 5799


Q ss_pred             EEEEcccccCC---CHHHHHHHHHHhcCcCcEEEEEeecCCC-CC----CCCCCCHHHHHHHHHHCCCeEEEEe
Q 022592          192 VAVFCLSLMGI---NFPNYLQEAQRVLKPSGWLLIAEVKSRF-DP----NTGGADPNKFSKAVCDLGFAPVSKD  257 (294)
Q Consensus       192 ~Vi~~~~l~~~---~~~~~l~el~r~LkpgG~l~i~e~~~~~-~~----~~~~~~~~~~~~~l~~~Gf~~~~~~  257 (294)
                      +|+++.+++|.   +...++.++.++|+|||.+++....... .+    ....++.+++.+.++  ||+++...
T Consensus        98 ~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~--~~~~~~~~  169 (197)
T PRK11207         98 FILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYE--GWEMVKYN  169 (197)
T ss_pred             EEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCCCCCCCCccCHHHHHHHhC--CCeEEEee
Confidence            99999999885   4579999999999999997665432211 11    112368888988887  89887753

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.58  E-value=6.7e-14  Score=121.32  Aligned_cols=128  Identities=25%  Similarity=0.357  Sum_probs=99.7

Q ss_pred             HHHHHhhccCCCCEEEEEcCcccHHHHHhc------cceEEEeccC-------------CCCcEEEccCCCCCCCCCCcc
Q 022592          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS-------------NDPSVIACDMSNTPLNSSSVD  191 (294)
Q Consensus       131 ~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~-------------~~~~~~~~d~~~lp~~~~~fD  191 (294)
                      .++..+... ++.+|||+|||+|.++..++      ..++++|+++             .++.+..+|+.+.+++.++||
T Consensus        30 ~~~~~~~~~-~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D  108 (223)
T TIGR01934        30 RAVKLIGVF-KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFD  108 (223)
T ss_pred             HHHHHhccC-CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEE
Confidence            344444443 66799999999999888775      2799999986             257888999998888778999


Q ss_pred             EEEEcccccCC-CHHHHHHHHHHhcCcCcEEEEEeecCCCCC-----------------------C-----------CCC
Q 022592          192 VAVFCLSLMGI-NFPNYLQEAQRVLKPSGWLLIAEVKSRFDP-----------------------N-----------TGG  236 (294)
Q Consensus       192 ~Vi~~~~l~~~-~~~~~l~el~r~LkpgG~l~i~e~~~~~~~-----------------------~-----------~~~  236 (294)
                      +|+++.++++. ++..+++++.++|+|||.+++.++......                       .           ...
T Consensus       109 ~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (223)
T TIGR01934       109 AVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFSKPANALLKKFYKFYLKNVLPSIGGLISKNAEAYTYLPESIRAF  188 (223)
T ss_pred             EEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhcCCchhhHHHHHHHHhC
Confidence            99999999884 889999999999999999999875432110                       0           012


Q ss_pred             CCHHHHHHHHHHCCCeEEEEecc
Q 022592          237 ADPNKFSKAVCDLGFAPVSKDFS  259 (294)
Q Consensus       237 ~~~~~~~~~l~~~Gf~~~~~~~~  259 (294)
                      ++..++..+|+++||+++.....
T Consensus       189 ~~~~~~~~~l~~aGf~~~~~~~~  211 (223)
T TIGR01934       189 PSQEELAAMLKEAGFEEVRYRSL  211 (223)
T ss_pred             CCHHHHHHHHHHcCCccceeeee
Confidence            46788999999999998775443

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.58  E-value=2e-14  Score=128.30  Aligned_cols=127  Identities=16%  Similarity=0.187  Sum_probs=98.5

Q ss_pred             HHHHHHHHhhccCCCCEEEEEcCcccHHHHHhc----cceEEEeccC--------------CC--CcEEEccCCCCCCCC
Q 022592          128 PVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS--------------ND--PSVIACDMSNTPLNS  187 (294)
Q Consensus       128 ~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~--------------~~--~~~~~~d~~~lp~~~  187 (294)
                      .++++...+... .+.+|||||||+|+++..++    ..|+|+|++.              ..  +.++...++++|. .
T Consensus       103 KW~rl~p~l~~L-~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~  180 (315)
T PF08003_consen  103 KWDRLLPHLPDL-KGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-L  180 (315)
T ss_pred             hHHHHHhhhCCc-CCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-c
Confidence            456778888655 77899999999999998776    4799999987              11  2223246677787 7


Q ss_pred             CCccEEEEcccccC-CCHHHHHHHHHHhcCcCcEEEEEeecC------CCCCCCCC---------CCHHHHHHHHHHCCC
Q 022592          188 SSVDVAVFCLSLMG-INFPNYLQEAQRVLKPSGWLLIAEVKS------RFDPNTGG---------ADPNKFSKAVCDLGF  251 (294)
Q Consensus       188 ~~fD~Vi~~~~l~~-~~~~~~l~el~r~LkpgG~l~i~e~~~------~~~~~~~~---------~~~~~~~~~l~~~Gf  251 (294)
                      +.||+|+|..+|+| .+|...|.++...|+|||.|++-.+.-      ...|...+         .+...+..+|+++||
T Consensus       181 ~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~gF  260 (315)
T PF08003_consen  181 GAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLERAGF  260 (315)
T ss_pred             CCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHHHHcCC
Confidence            88999999999999 599999999999999999999853221      01111111         489999999999999


Q ss_pred             eEEEE
Q 022592          252 APVSK  256 (294)
Q Consensus       252 ~~~~~  256 (294)
                      ..+++
T Consensus       261 ~~v~~  265 (315)
T PF08003_consen  261 KDVRC  265 (315)
T ss_pred             ceEEE
Confidence            98884

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.58  E-value=3.1e-14  Score=128.00  Aligned_cols=118  Identities=22%  Similarity=0.324  Sum_probs=95.1

Q ss_pred             CCCCEEEEEcCcccHHHHHhc------cceEEEeccC---------------CCCcEEEccCCCCCCCCCCccEEEEccc
Q 022592          140 SPSLVIADFGCGDARLAKSVK------NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVDVAVFCLS  198 (294)
Q Consensus       140 ~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~---------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~  198 (294)
                      .++.+|||||||+|.++..++      .+|+|+|+++               .++.++.+|++.+|+++++||+|++..+
T Consensus        76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~v  155 (272)
T PRK11873         76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNCV  155 (272)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcCc
Confidence            367899999999998765443      2699999987               3567888999999998889999999999


Q ss_pred             ccCC-CHHHHHHHHHHhcCcCcEEEEEeecCCCC--------------CCCCCCCHHHHHHHHHHCCCeEEEEe
Q 022592          199 LMGI-NFPNYLQEAQRVLKPSGWLLIAEVKSRFD--------------PNTGGADPNKFSKAVCDLGFAPVSKD  257 (294)
Q Consensus       199 l~~~-~~~~~l~el~r~LkpgG~l~i~e~~~~~~--------------~~~~~~~~~~~~~~l~~~Gf~~~~~~  257 (294)
                      ++|. +...+++++.++|+|||.|++.++...-.              .....++..++..+|+++||..+.+.
T Consensus       156 ~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~v~i~  229 (272)
T PRK11873        156 INLSPDKERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVDITIQ  229 (272)
T ss_pred             ccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCceEEE
Confidence            9885 88899999999999999999987542110              01122577899999999999987653

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.57  E-value=1.7e-15  Score=130.66  Aligned_cols=115  Identities=17%  Similarity=0.332  Sum_probs=92.3

Q ss_pred             CCCEEEEEcCcccHHHHHhc---cceEEEeccCCC--------------CcEEEccCCCCCCCCCCccEEEEcccccCC-
Q 022592          141 PSLVIADFGCGDARLAKSVK---NKVFSFDLVSND--------------PSVIACDMSNTPLNSSSVDVAVFCLSLMGI-  202 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~~~--------------~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~-  202 (294)
                      ++.+|||||||-|.++..++   ..|+|+|+++..              +.+....++++....++||+|+|..+|+|. 
T Consensus        59 ~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv~  138 (243)
T COG2227          59 PGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHVP  138 (243)
T ss_pred             CCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHccC
Confidence            67899999999999999998   499999999842              335555666655555899999999999995 


Q ss_pred             CHHHHHHHHHHhcCcCcEEEEEeecCCCC----------------CCC-----CCCCHHHHHHHHHHCCCeEEE
Q 022592          203 NFPNYLQEAQRVLKPSGWLLIAEVKSRFD----------------PNT-----GGADPNKFSKAVCDLGFAPVS  255 (294)
Q Consensus       203 ~~~~~l~el~r~LkpgG~l~i~e~~~~~~----------------~~~-----~~~~~~~~~~~l~~~Gf~~~~  255 (294)
                      ++..+++.+.+++||||.++++.++..+.                |..     -...++++..++..+|+.+..
T Consensus       139 dp~~~~~~c~~lvkP~G~lf~STinrt~ka~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~~~~~~  212 (243)
T COG2227         139 DPESFLRACAKLVKPGGILFLSTINRTLKAYLLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGANLKIID  212 (243)
T ss_pred             CHHHHHHHHHHHcCCCcEEEEeccccCHHHHHHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccCCceEEe
Confidence            99999999999999999999998765321                110     015778888888888988876

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.56  E-value=3e-14  Score=124.25  Aligned_cols=118  Identities=14%  Similarity=0.196  Sum_probs=93.3

Q ss_pred             EEEEEcCcccHHHHHhc-----cceEEEeccC----------------CCCcEEEccCCCCCCCCCCccEEEEcccccCC
Q 022592          144 VIADFGCGDARLAKSVK-----NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGI  202 (294)
Q Consensus       144 ~VLDiGcG~G~~~~~l~-----~~v~gvD~s~----------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~  202 (294)
                      +|||||||+|.++..++     ..|+|+|+|+                .++.++.+|+...|++ ++||+|++..+++|.
T Consensus         2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~~~   80 (224)
T smart00828        2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIHHI   80 (224)
T ss_pred             eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHHhC
Confidence            69999999999888775     3689999986                2457888898766664 589999999999995


Q ss_pred             -CHHHHHHHHHHhcCcCcEEEEEeecCCCCC-------CCCCCCHHHHHHHHHHCCCeEEEEeccCCe
Q 022592          203 -NFPNYLQEAQRVLKPSGWLLIAEVKSRFDP-------NTGGADPNKFSKAVCDLGFAPVSKDFSNKM  262 (294)
Q Consensus       203 -~~~~~l~el~r~LkpgG~l~i~e~~~~~~~-------~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~  262 (294)
                       ++..+++++.++|+|||.+++.++......       .....+..++..++.++||.++.......+
T Consensus        81 ~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~~~~~~  148 (224)
T smart00828       81 KDKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEGVDASLE  148 (224)
T ss_pred             CCHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEEeEECcHh
Confidence             889999999999999999999886432111       011257889999999999999885543333

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.56  E-value=6.5e-14  Score=122.53  Aligned_cols=114  Identities=23%  Similarity=0.345  Sum_probs=93.0

Q ss_pred             CCEEEEEcCcccHHHHHhc-----cceEEEeccC-----------CCCcEEEccCCCCCCCCCCccEEEEcccccCC-CH
Q 022592          142 SLVIADFGCGDARLAKSVK-----NKVFSFDLVS-----------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGI-NF  204 (294)
Q Consensus       142 ~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~-----------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~-~~  204 (294)
                      ..+|||||||+|.++..++     ..++++|+++           .++.++.+|+...++++++||+|++..+++|. ++
T Consensus        35 ~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~~~  114 (240)
T TIGR02072        35 PASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDDL  114 (240)
T ss_pred             CCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhccCH
Confidence            4689999999999888776     2679999987           25688999999999888999999999999996 89


Q ss_pred             HHHHHHHHHhcCcCcEEEEEeecCCCC---------CCCCCCCHHHHHHHHHHCCCeEEEE
Q 022592          205 PNYLQEAQRVLKPSGWLLIAEVKSRFD---------PNTGGADPNKFSKAVCDLGFAPVSK  256 (294)
Q Consensus       205 ~~~l~el~r~LkpgG~l~i~e~~~~~~---------~~~~~~~~~~~~~~l~~~Gf~~~~~  256 (294)
                      ..++.++.++|+|||.+++.++.....         ......+.+.+.+++..+ |..+..
T Consensus       115 ~~~l~~~~~~L~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-f~~~~~  174 (240)
T TIGR02072       115 SQALSELARVLKPGGLLAFSTFGPGTLHELRQSFGQHGLRYLSLDELKALLKNS-FELLTL  174 (240)
T ss_pred             HHHHHHHHHHcCCCcEEEEEeCCccCHHHHHHHHHHhccCCCCHHHHHHHHHHh-cCCcEE
Confidence            999999999999999999986543211         112335778899999888 876653

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.55  E-value=8.2e-14  Score=119.34  Aligned_cols=128  Identities=16%  Similarity=0.218  Sum_probs=94.8

Q ss_pred             cHHHHHHHHhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccCC--------------CCcEEEccCCCCCCCCCC
Q 022592          127 LPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVSN--------------DPSVIACDMSNTPLNSSS  189 (294)
Q Consensus       127 ~~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~~--------------~~~~~~~d~~~lp~~~~~  189 (294)
                      .....++..+... ++.+|||+|||+|.++..++   ..|+|+|+|+.              ++.+..+|+...+++ ++
T Consensus        17 ~~~~~l~~~~~~~-~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~   94 (195)
T TIGR00477        17 TTHSAVREAVKTV-APCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALN-ED   94 (195)
T ss_pred             CchHHHHHHhccC-CCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhcccc-CC
Confidence            3345566666555 44699999999999999887   38999999971              345667777666654 57


Q ss_pred             ccEEEEcccccCC---CHHHHHHHHHHhcCcCcEEEEEeecCCC----C-CCCCCCCHHHHHHHHHHCCCeEEEEec
Q 022592          190 VDVAVFCLSLMGI---NFPNYLQEAQRVLKPSGWLLIAEVKSRF----D-PNTGGADPNKFSKAVCDLGFAPVSKDF  258 (294)
Q Consensus       190 fD~Vi~~~~l~~~---~~~~~l~el~r~LkpgG~l~i~e~~~~~----~-~~~~~~~~~~~~~~l~~~Gf~~~~~~~  258 (294)
                      ||+|+++.+++|.   +...+++++.++|+|||++++.++...-    . +....++.+++..++.  +|++.....
T Consensus        95 fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~~~~~~~el~~~f~--~~~~~~~~e  169 (195)
T TIGR00477        95 YDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCHMPFSFTFKEDELRQYYA--DWELLKYNE  169 (195)
T ss_pred             CCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCCCCcCccCCHHHHHHHhC--CCeEEEeec
Confidence            9999999999885   3568999999999999997776543211    1 1122478899999886  688887553

Part of a tellurite-reducing operon tehA and tehB

>TIGR00740 methyltransferase, putative

Probab=99.55  E-value=4.2e-15  Score=131.16  Aligned_cols=127  Identities=16%  Similarity=0.206  Sum_probs=96.3

Q ss_pred             CCCEEEEEcCcccHHHHHhc-------cceEEEeccC----------------CCCcEEEccCCCCCCCCCCccEEEEcc
Q 022592          141 PSLVIADFGCGDARLAKSVK-------NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSVDVAVFCL  197 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~-------~~v~gvD~s~----------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~  197 (294)
                      ++.+|||||||+|.++..++       .+++|+|+|+                .++.++.+|+..++++  .+|+|++..
T Consensus        53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~~  130 (239)
T TIGR00740        53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILNF  130 (239)
T ss_pred             CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeeec
Confidence            56799999999999887664       2699999986                2467899999988875  489999999


Q ss_pred             cccCC---CHHHHHHHHHHhcCcCcEEEEEeecCCC---------------------C------------CCCCCCCHHH
Q 022592          198 SLMGI---NFPNYLQEAQRVLKPSGWLLIAEVKSRF---------------------D------------PNTGGADPNK  241 (294)
Q Consensus       198 ~l~~~---~~~~~l~el~r~LkpgG~l~i~e~~~~~---------------------~------------~~~~~~~~~~  241 (294)
                      +++|.   ++..+++++.++|+|||.+++.+.....                     .            .....++.++
T Consensus       131 ~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~  210 (239)
T TIGR00740       131 TLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEISQKRTALENVMRTDSIET  210 (239)
T ss_pred             chhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCCCHHH
Confidence            99985   3578999999999999999998742210                     0            0112368899


Q ss_pred             HHHHHHHCCCeEEEEeccCCeEEEEEEE
Q 022592          242 FSKAVCDLGFAPVSKDFSNKMFIMFYFK  269 (294)
Q Consensus       242 ~~~~l~~~Gf~~~~~~~~~~~f~~i~~~  269 (294)
                      +..+++++||..+........|..++.+
T Consensus       211 ~~~~l~~aGF~~~~~~~~~~~~~~~~~~  238 (239)
T TIGR00740       211 HKARLKNVGFSHVELWFQCFNFGSLVAV  238 (239)
T ss_pred             HHHHHHHcCCchHHHHHHHHhHhHHhee
Confidence            9999999999876654444444444443

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.55  E-value=1.3e-13  Score=122.96  Aligned_cols=125  Identities=13%  Similarity=0.203  Sum_probs=94.5

Q ss_pred             HHHHHHHhhccCCCCEEEEEcCcccHHHHHhc-----cceEEEeccC----------CCCcEEEccCCCCCCCCCCccEE
Q 022592          129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS----------NDPSVIACDMSNTPLNSSSVDVA  193 (294)
Q Consensus       129 ~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~----------~~~~~~~~d~~~lp~~~~~fD~V  193 (294)
                      ...++..+... ++.+|||||||+|.++..++     ..|+|+|+|+          .++.++.+|+..++ +.++||+|
T Consensus        20 ~~~ll~~~~~~-~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v   97 (258)
T PRK01683         20 ARDLLARVPLE-NPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQ-PPQALDLI   97 (258)
T ss_pred             HHHHHhhCCCc-CCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccC-CCCCccEE
Confidence            34566665443 56799999999999988776     3799999997          36778899998765 45689999


Q ss_pred             EEcccccCC-CHHHHHHHHHHhcCcCcEEEEEeecCC----------------CC-----CC---CCCCCHHHHHHHHHH
Q 022592          194 VFCLSLMGI-NFPNYLQEAQRVLKPSGWLLIAEVKSR----------------FD-----PN---TGGADPNKFSKAVCD  248 (294)
Q Consensus       194 i~~~~l~~~-~~~~~l~el~r~LkpgG~l~i~e~~~~----------------~~-----~~---~~~~~~~~~~~~l~~  248 (294)
                      +++.+++|. +...++.++.++|+|||.+++......                +.     ..   ....+...+...+.+
T Consensus        98 ~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~~  177 (258)
T PRK01683         98 FANASLQWLPDHLELFPRLVSLLAPGGVLAVQMPDNLDEPSHVLMREVAENGPWEQNLPDRGARRAPLPPPHAYYDALAP  177 (258)
T ss_pred             EEccChhhCCCHHHHHHHHHHhcCCCcEEEEECCCCCCCHHHHHHHHHHccCchHHHhccccccCcCCCCHHHHHHHHHh
Confidence            999999995 888999999999999999988531110                00     00   112466788999999


Q ss_pred             CCCeEEE
Q 022592          249 LGFAPVS  255 (294)
Q Consensus       249 ~Gf~~~~  255 (294)
                      +|+.+..
T Consensus       178 ~g~~v~~  184 (258)
T PRK01683        178 AACRVDI  184 (258)
T ss_pred             CCCceee
Confidence            9987543

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.54  E-value=2.6e-14  Score=128.36  Aligned_cols=125  Identities=22%  Similarity=0.297  Sum_probs=88.6

Q ss_pred             HHHHHHhhccCCCCEEEEEcCcccHHHHHhc----cceEEEeccC----------------CCCcEEEccCCCCCCCCCC
Q 022592          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSS  189 (294)
Q Consensus       130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~----------------~~~~~~~~d~~~lp~~~~~  189 (294)
                      +.+++.+... ++.+|||||||.|.++..++    .+|+|+++|.                +.+.+..+|..+++.   +
T Consensus        52 ~~~~~~~~l~-~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~---~  127 (273)
T PF02353_consen   52 DLLCEKLGLK-PGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPG---K  127 (273)
T ss_dssp             HHHHTTTT---TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG------S
T ss_pred             HHHHHHhCCC-CCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCC---C
Confidence            3445555443 88899999999999999987    3899999997                356788888877654   8


Q ss_pred             ccEEEEcccccCC---CHHHHHHHHHHhcCcCcEEEEEeecC------------------CCCCCCCCCCHHHHHHHHHH
Q 022592          190 VDVAVFCLSLMGI---NFPNYLQEAQRVLKPSGWLLIAEVKS------------------RFDPNTGGADPNKFSKAVCD  248 (294)
Q Consensus       190 fD~Vi~~~~l~~~---~~~~~l~el~r~LkpgG~l~i~e~~~------------------~~~~~~~~~~~~~~~~~l~~  248 (294)
                      ||.|++..+++|.   +...+++.+.++|+|||.+++-.+..                  .+.|...-.+..++...+++
T Consensus       128 fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~i~kyiFPgg~lps~~~~~~~~~~  207 (273)
T PF02353_consen  128 FDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRSSSDFIRKYIFPGGYLPSLSEILRAAED  207 (273)
T ss_dssp             -SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTCCCHHHHHHTSTTS---BHHHHHHHHHH
T ss_pred             CCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccchhhcCCCceEEEEeeCCCCCCCCHHHHHHHHhc
Confidence            9999999999996   67899999999999999999864331                  11222223578899999999


Q ss_pred             CCCeEEEEec
Q 022592          249 LGFAPVSKDF  258 (294)
Q Consensus       249 ~Gf~~~~~~~  258 (294)
                      .||++.....
T Consensus       208 ~~l~v~~~~~  217 (273)
T PF02353_consen  208 AGLEVEDVEN  217 (273)
T ss_dssp             TT-EEEEEEE
T ss_pred             CCEEEEEEEE
Confidence            9999988654

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.54  E-value=1.4e-14  Score=130.32  Aligned_cols=81  Identities=20%  Similarity=0.439  Sum_probs=67.7

Q ss_pred             CCCEEEEEcCcccHHHHHhcc--------ceEEEeccC----------CCCcEEEccCCCCCCCCCCccEEEEcccccCC
Q 022592          141 PSLVIADFGCGDARLAKSVKN--------KVFSFDLVS----------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGI  202 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~~--------~v~gvD~s~----------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~  202 (294)
                      ...+|||||||+|.++..++.        .++|+|+|+          .++.+.++|+.++|+++++||+|++.++    
T Consensus        85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~----  160 (272)
T PRK11088         85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA----  160 (272)
T ss_pred             CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC----
Confidence            346899999999998887651        579999997          4678999999999999999999998765    


Q ss_pred             CHHHHHHHHHHhcCcCcEEEEEeec
Q 022592          203 NFPNYLQEAQRVLKPSGWLLIAEVK  227 (294)
Q Consensus       203 ~~~~~l~el~r~LkpgG~l~i~e~~  227 (294)
                        ...+.++.|+|+|||.|+++...
T Consensus       161 --~~~~~e~~rvLkpgG~li~~~p~  183 (272)
T PRK11088        161 --PCKAEELARVVKPGGIVITVTPG  183 (272)
T ss_pred             --CCCHHHHHhhccCCCEEEEEeCC
Confidence              23568999999999999997543

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=99.52  E-value=1.1e-14  Score=126.57  Aligned_cols=111  Identities=19%  Similarity=0.292  Sum_probs=88.1

Q ss_pred             CCEEEEEcCcccHHHHHhc---cceEEEeccCC---------------------CCcEEEccCCCCCCCCCCccEEEEcc
Q 022592          142 SLVIADFGCGDARLAKSVK---NKVFSFDLVSN---------------------DPSVIACDMSNTPLNSSSVDVAVFCL  197 (294)
Q Consensus       142 ~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~~---------------------~~~~~~~d~~~lp~~~~~fD~Vi~~~  197 (294)
                      +.+|||+|||.|.++..|+   +.|+|+|+++.                     .+.+.+.|++...   +.||+|+|+.
T Consensus        90 g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVvcse  166 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVVCSE  166 (282)
T ss_pred             CceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---cccceeeeHH
Confidence            4689999999999999998   59999999982                     1334444555443   4599999999


Q ss_pred             cccCC-CHHHHHHHHHHhcCcCcEEEEEeecCCCCCCC---------------------CCCCHHHHHHHHHHCCCeEEE
Q 022592          198 SLMGI-NFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNT---------------------GGADPNKFSKAVCDLGFAPVS  255 (294)
Q Consensus       198 ~l~~~-~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~---------------------~~~~~~~~~~~l~~~Gf~~~~  255 (294)
                      +++|. |+..++..+.++|+|||.++|+++........                     ...++.++..++...|+.+..
T Consensus       167 vleHV~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~~~~v~~  246 (282)
T KOG1270|consen  167 VLEHVKDPQEFLNCLSALLKPNGRLFITTINRTILSFAGTIFLAEIVLRIVPKGTHTWEKFINPEELTSILNANGAQVND  246 (282)
T ss_pred             HHHHHhCHHHHHHHHHHHhCCCCceEeeehhhhHHHhhccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHhcCcchhh
Confidence            99996 99999999999999999999997665321111                     115889999999999998766

>PRK08317 hypothetical protein; Provisional

Probab=99.52  E-value=2.2e-13  Score=118.98  Aligned_cols=125  Identities=18%  Similarity=0.265  Sum_probs=96.5

Q ss_pred             HHHHhhccCCCCEEEEEcCcccHHHHHhc------cceEEEeccC--------------CCCcEEEccCCCCCCCCCCcc
Q 022592          132 IVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS--------------NDPSVIACDMSNTPLNSSSVD  191 (294)
Q Consensus       132 ~~~~l~~~~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~--------------~~~~~~~~d~~~lp~~~~~fD  191 (294)
                      ++..+... ++.+|||+|||+|.++..++      ..++|+|+++              .++.+..+|+...++++++||
T Consensus        11 ~~~~~~~~-~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D   89 (241)
T PRK08317         11 TFELLAVQ-PGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFD   89 (241)
T ss_pred             HHHHcCCC-CCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCce
Confidence            34444433 66799999999999888775      3789999986              246788889988888888999


Q ss_pred             EEEEcccccC-CCHHHHHHHHHHhcCcCcEEEEEeecCC---CCC----------------CCCCCCHHHHHHHHHHCCC
Q 022592          192 VAVFCLSLMG-INFPNYLQEAQRVLKPSGWLLIAEVKSR---FDP----------------NTGGADPNKFSKAVCDLGF  251 (294)
Q Consensus       192 ~Vi~~~~l~~-~~~~~~l~el~r~LkpgG~l~i~e~~~~---~~~----------------~~~~~~~~~~~~~l~~~Gf  251 (294)
                      +|++..+++| .++..++.++.++|+|||.+++.+....   +.+                .........+..+|+++||
T Consensus        90 ~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf  169 (241)
T PRK08317         90 AVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWSDHFADPWLGRRLPGLFREAGL  169 (241)
T ss_pred             EEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHcCC
Confidence            9999999998 4999999999999999999999864311   111                0111345678899999999


Q ss_pred             eEEEEe
Q 022592          252 APVSKD  257 (294)
Q Consensus       252 ~~~~~~  257 (294)
                      .++...
T Consensus       170 ~~~~~~  175 (241)
T PRK08317        170 TDIEVE  175 (241)
T ss_pred             CceeEE
Confidence            887643

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.51  E-value=1.3e-13  Score=122.81  Aligned_cols=126  Identities=18%  Similarity=0.279  Sum_probs=100.0

Q ss_pred             HHHHHHhhccCCCCEEEEEcCcccHHHHHhc----cceEEEeccC----------------CCCcEEEccCCCCCCCCCC
Q 022592          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSS  189 (294)
Q Consensus       130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~----------------~~~~~~~~d~~~lp~~~~~  189 (294)
                      +.+++.+... ||.+|||||||.|.++..++    .+|+|+++|+                .++++...|..+++   +.
T Consensus        62 ~~~~~kl~L~-~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~---e~  137 (283)
T COG2230          62 DLILEKLGLK-PGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE---EP  137 (283)
T ss_pred             HHHHHhcCCC-CCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc---cc
Confidence            4456666555 89999999999999999888    3899999998                26677777777765   34


Q ss_pred             ccEEEEcccccCC---CHHHHHHHHHHhcCcCcEEEEEeecCCCCCC--------------CCCCCHHHHHHHHHHCCCe
Q 022592          190 VDVAVFCLSLMGI---NFPNYLQEAQRVLKPSGWLLIAEVKSRFDPN--------------TGGADPNKFSKAVCDLGFA  252 (294)
Q Consensus       190 fD~Vi~~~~l~~~---~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~--------------~~~~~~~~~~~~l~~~Gf~  252 (294)
                      ||-|++..+++|+   +.+.++..+.++|+|||.+++-.+.....+.              ..-.+...+....+++||.
T Consensus       138 fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~~~~~~i~~yiFPgG~lPs~~~i~~~~~~~~~~  217 (283)
T COG2230         138 FDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFRRFPDFIDKYIFPGGELPSISEILELASEAGFV  217 (283)
T ss_pred             cceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccccchHHHHHhCCCCCcCCCHHHHHHHHHhcCcE
Confidence            9999999999995   6899999999999999999997665433221              1124778899999999999


Q ss_pred             EEEEecc
Q 022592          253 PVSKDFS  259 (294)
Q Consensus       253 ~~~~~~~  259 (294)
                      +......
T Consensus       218 v~~~~~~  224 (283)
T COG2230         218 VLDVESL  224 (283)
T ss_pred             EehHhhh
Confidence            9875443

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.49  E-value=4.5e-13  Score=116.21  Aligned_cols=139  Identities=12%  Similarity=0.096  Sum_probs=97.7

Q ss_pred             HHhhhccCCC-cHHHHHHHHhhcc--CCCCEEEEEcCcccHHHHHhcc---ceEEEeccCC-------------------
Q 022592          117 YQEQMSHWPE-LPVNIIVKWLKDH--SPSLVIADFGCGDARLAKSVKN---KVFSFDLVSN-------------------  171 (294)
Q Consensus       117 ~~~~~~~~~~-~~~~~~~~~l~~~--~~~~~VLDiGcG~G~~~~~l~~---~v~gvD~s~~-------------------  171 (294)
                      |......|.. .+-..+.+++...  +++.+|||+|||.|..+..|+.   .|+|+|+|+.                   
T Consensus         7 y~~~~~~w~~~~p~~~l~~~~~~l~~~~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~   86 (213)
T TIGR03840         7 WQEGQIGFHQSEVNPLLVKHWPALGLPAGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPTVTQQG   86 (213)
T ss_pred             HhcCCCCCccCCCCHHHHHHHHhhCCCCCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcceeccc
Confidence            3444456642 3334455554432  3567999999999999999983   8999999982                   


Q ss_pred             --------CCcEEEccCCCCCCC-CCCccEEEEcccccCCC---HHHHHHHHHHhcCcCcEEEEEeecCCCCC---CCCC
Q 022592          172 --------DPSVIACDMSNTPLN-SSSVDVAVFCLSLMGIN---FPNYLQEAQRVLKPSGWLLIAEVKSRFDP---NTGG  236 (294)
Q Consensus       172 --------~~~~~~~d~~~lp~~-~~~fD~Vi~~~~l~~~~---~~~~l~el~r~LkpgG~l~i~e~~~~~~~---~~~~  236 (294)
                              ++.++++|+.+++.. .+.||+|+-..+++|.+   +..++..+.++|+|||.+++..+......   .-..
T Consensus        87 ~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~~gpp~~  166 (213)
T TIGR03840        87 EFTRYRAGNIEIFCGDFFALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEMAGPPFS  166 (213)
T ss_pred             cceeeecCceEEEEccCCCCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCCCCcCCC
Confidence                    256789999887643 35799999998888863   45799999999999998777654321111   1123


Q ss_pred             CCHHHHHHHHHHCCCeEEEE
Q 022592          237 ADPNKFSKAVCDLGFAPVSK  256 (294)
Q Consensus       237 ~~~~~~~~~l~~~Gf~~~~~  256 (294)
                      ++.+++.+++.. +|.+...
T Consensus       167 ~~~~eL~~~f~~-~~~i~~~  185 (213)
T TIGR03840       167 VSPAEVEALYGG-HYEIELL  185 (213)
T ss_pred             CCHHHHHHHhcC-CceEEEE
Confidence            688999888863 5666653

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.49  E-value=4.3e-13  Score=121.63  Aligned_cols=114  Identities=17%  Similarity=0.211  Sum_probs=87.6

Q ss_pred             CCCEEEEEcCcccHHHHHhc---cceEEEeccCC--------------CCcEEEccCCCCCCCCCCccEEEEcccccCC-
Q 022592          141 PSLVIADFGCGDARLAKSVK---NKVFSFDLVSN--------------DPSVIACDMSNTPLNSSSVDVAVFCLSLMGI-  202 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~~--------------~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~-  202 (294)
                      ++.+|||||||+|.++..++   ..|+|+|+|+.              ++.+...|+...++ +++||+|++..+++|. 
T Consensus       120 ~~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~l~  198 (287)
T PRK12335        120 KPGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASI-QEEYDFILSTVVLMFLN  198 (287)
T ss_pred             CCCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccc-cCCccEEEEcchhhhCC
Confidence            34599999999999998887   38999999972              45677778877665 6789999999999985 


Q ss_pred             --CHHHHHHHHHHhcCcCcEEEEEeecCC-CC----CCCCCCCHHHHHHHHHHCCCeEEEEe
Q 022592          203 --NFPNYLQEAQRVLKPSGWLLIAEVKSR-FD----PNTGGADPNKFSKAVCDLGFAPVSKD  257 (294)
Q Consensus       203 --~~~~~l~el~r~LkpgG~l~i~e~~~~-~~----~~~~~~~~~~~~~~l~~~Gf~~~~~~  257 (294)
                        +...+++++.++|+|||+++++..... ..    +....++..++.+.+.  +|+++...
T Consensus       199 ~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~~p~~~~~~~~el~~~~~--~~~i~~~~  258 (287)
T PRK12335        199 RERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCPMPFSFTFKEGELKDYYQ--DWEIVKYN  258 (287)
T ss_pred             HHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCCCCCCcccCHHHHHHHhC--CCEEEEEe
Confidence              456899999999999999777543221 11    1123378899999887  49888753

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.49  E-value=8.6e-14  Score=114.29  Aligned_cols=86  Identities=27%  Similarity=0.475  Sum_probs=75.1

Q ss_pred             CCCEEEEEcCcccHHHHHhc------cceEEEeccC---------------CCCcEEEccCCCCC--CCCCCccEEEEcc
Q 022592          141 PSLVIADFGCGDARLAKSVK------NKVFSFDLVS---------------NDPSVIACDMSNTP--LNSSSVDVAVFCL  197 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~---------------~~~~~~~~d~~~lp--~~~~~fD~Vi~~~  197 (294)
                      .+.+|||+|||+|.++..++      .+++|+|+|+               .+++++++|+.+++  ++ +.||+|++..
T Consensus         3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~~   81 (152)
T PF13847_consen    3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISNG   81 (152)
T ss_dssp             TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEES
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEcC
Confidence            45799999999999988777      3799999998               46899999999977  55 7899999999


Q ss_pred             cccCC-CHHHHHHHHHHhcCcCcEEEEEeec
Q 022592          198 SLMGI-NFPNYLQEAQRVLKPSGWLLIAEVK  227 (294)
Q Consensus       198 ~l~~~-~~~~~l~el~r~LkpgG~l~i~e~~  227 (294)
                      +++|. ++..++.++.++|++||.+++.+..
T Consensus        82 ~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~  112 (152)
T PF13847_consen   82 VLHHFPDPEKVLKNIIRLLKPGGILIISDPN  112 (152)
T ss_dssp             TGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             chhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence            99885 7789999999999999999998766

...

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=99.49  E-value=3.5e-13  Score=113.20  Aligned_cols=122  Identities=23%  Similarity=0.438  Sum_probs=95.7

Q ss_pred             HHHHHHhhccCCCCEEEEEcCcccHHHHHhcc----ceEEEeccC--------CCCcEEEccCCC-C-CCCCCCccEEEE
Q 022592          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVKN----KVFSFDLVS--------NDPSVIACDMSN-T-PLNSSSVDVAVF  195 (294)
Q Consensus       130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~~----~v~gvD~s~--------~~~~~~~~d~~~-l-p~~~~~fD~Vi~  195 (294)
                      +.+.+++.   |+.+|||+|||.|.++..|..    .++|+|+++        ..+.++++|+.. + .+++++||.||+
T Consensus         5 ~~I~~~I~---pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIl   81 (193)
T PF07021_consen    5 QIIAEWIE---PGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVIL   81 (193)
T ss_pred             HHHHHHcC---CCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEeh
Confidence            45666665   778999999999999999973    689999998        467899999975 4 488999999999


Q ss_pred             cccccCC-CHHHHHHHHHHhcCcCcEEEEEeecC-------------------------CC-CCCCCCCCHHHHHHHHHH
Q 022592          196 CLSLMGI-NFPNYLQEAQRVLKPSGWLLIAEVKS-------------------------RF-DPNTGGADPNKFSKAVCD  248 (294)
Q Consensus       196 ~~~l~~~-~~~~~l~el~r~LkpgG~l~i~e~~~-------------------------~~-~~~~~~~~~~~~~~~l~~  248 (294)
                      +.+|++. +|..+|+|+.|+   |...+++ +.+                         ++ .|+...+|..+|+.+.++
T Consensus        82 sqtLQ~~~~P~~vL~EmlRV---gr~~IVs-FPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~  157 (193)
T PF07021_consen   82 SQTLQAVRRPDEVLEEMLRV---GRRAIVS-FPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRE  157 (193)
T ss_pred             HhHHHhHhHHHHHHHHHHHh---cCeEEEE-ecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHH
Confidence            9999995 889999999877   4345554 111                         11 233444799999999999


Q ss_pred             CCCeEEEEec
Q 022592          249 LGFAPVSKDF  258 (294)
Q Consensus       249 ~Gf~~~~~~~  258 (294)
                      .|+++++...
T Consensus       158 ~~i~I~~~~~  167 (193)
T PF07021_consen  158 LGIRIEERVF  167 (193)
T ss_pred             CCCEEEEEEE
Confidence            9999988543

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PRK06202 hypothetical protein; Provisional

Probab=99.49  E-value=7.9e-13  Score=116.14  Aligned_cols=113  Identities=15%  Similarity=0.201  Sum_probs=86.2

Q ss_pred             CCCEEEEEcCcccHHHHHhc---------cceEEEeccC------------CCCcEEEccCCCCCCCCCCccEEEEcccc
Q 022592          141 PSLVIADFGCGDARLAKSVK---------NKVFSFDLVS------------NDPSVIACDMSNTPLNSSSVDVAVFCLSL  199 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~---------~~v~gvD~s~------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l  199 (294)
                      ++.+|||||||+|.++..++         ..|+|+|+|+            .++.+...+...++.++++||+|+++.++
T Consensus        60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~l  139 (232)
T PRK06202         60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHFL  139 (232)
T ss_pred             CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCee
Confidence            55699999999999877664         2799999998            24567777777777777899999999999


Q ss_pred             cCC-C--HHHHHHHHHHhcCcCcEEEEEeecCC------------------CCCC------CCCCCHHHHHHHHHHCCCe
Q 022592          200 MGI-N--FPNYLQEAQRVLKPSGWLLIAEVKSR------------------FDPN------TGGADPNKFSKAVCDLGFA  252 (294)
Q Consensus       200 ~~~-~--~~~~l~el~r~LkpgG~l~i~e~~~~------------------~~~~------~~~~~~~~~~~~l~~~Gf~  252 (294)
                      ||. +  ...+++++.++++  |.+++.++...                  +...      ...++.+++.+++++ ||+
T Consensus       140 hh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~~~~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~~ll~~-Gf~  216 (232)
T PRK06202        140 HHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRLAYALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELAALAPQ-GWR  216 (232)
T ss_pred             ecCChHHHHHHHHHHHHhcC--eeEEEeccccCHHHHHHHHHHHHHhccCceeeccchHHHHhhcCHHHHHHHhhC-CCe
Confidence            996 3  3579999999998  56666554421                  1111      123799999999999 999


Q ss_pred             EEEE
Q 022592          253 PVSK  256 (294)
Q Consensus       253 ~~~~  256 (294)
                      +...
T Consensus       217 ~~~~  220 (232)
T PRK06202        217 VERQ  220 (232)
T ss_pred             EEec
Confidence            8763

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.46  E-value=6.1e-13  Score=115.82  Aligned_cols=128  Identities=16%  Similarity=0.228  Sum_probs=94.5

Q ss_pred             HHHHHHhhc-cCCCCEEEEEcCcccHHHHHhc---cceEEEeccC----------------CCCcEEEccCCCCCCCCCC
Q 022592          130 NIIVKWLKD-HSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSS  189 (294)
Q Consensus       130 ~~~~~~l~~-~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~----------------~~~~~~~~d~~~lp~~~~~  189 (294)
                      ..+++++.. ..++.+|||||||+|.++..++   ..|+|+|+|+                .++.+.++|+..++   ++
T Consensus        43 ~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~  119 (219)
T TIGR02021        43 RKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC---GE  119 (219)
T ss_pred             HHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC---CC
Confidence            345666653 2356799999999999998887   4899999997                15678888988765   78


Q ss_pred             ccEEEEcccccCC---CHHHHHHHHHHhcCcCcEEEEEeecC----------CCC-----CCCCCCCHHHHHHHHHHCCC
Q 022592          190 VDVAVFCLSLMGI---NFPNYLQEAQRVLKPSGWLLIAEVKS----------RFD-----PNTGGADPNKFSKAVCDLGF  251 (294)
Q Consensus       190 fD~Vi~~~~l~~~---~~~~~l~el~r~LkpgG~l~i~e~~~----------~~~-----~~~~~~~~~~~~~~l~~~Gf  251 (294)
                      ||+|++..+++|.   +...++.++.+++++++.+.+.....          .+.     .....++.+++.++++++||
T Consensus       120 fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf  199 (219)
T TIGR02021       120 FDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFAPKTAWLAFLKMIGELFPGSSRATSAYLHPMTDLERALGELGW  199 (219)
T ss_pred             cCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHhhCcCcccccceEEecHHHHHHHHHHcCc
Confidence            9999999999885   35678999999998776666542110          111     11122588999999999999


Q ss_pred             eEEEEeccC
Q 022592          252 APVSKDFSN  260 (294)
Q Consensus       252 ~~~~~~~~~  260 (294)
                      +++......
T Consensus       200 ~v~~~~~~~  208 (219)
T TIGR02021       200 KIVREGLVS  208 (219)
T ss_pred             eeeeeeccc
Confidence            999865443

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.46  E-value=1.8e-12  Score=110.21  Aligned_cols=102  Identities=16%  Similarity=0.149  Sum_probs=83.9

Q ss_pred             CCCEEEEEcCcccHHHHHhc-----cceEEEeccC---------------CCCcEEEccCCCCCCCCCCccEEEEccccc
Q 022592          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLM  200 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~---------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~  200 (294)
                      ++.+|||||||+|..+..++     .+|+++|+++               .+++++.+|+.+++. .++||+|++...  
T Consensus        45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~~--  121 (187)
T PRK00107         45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRAV--  121 (187)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEccc--
Confidence            46799999999999888765     3899999997               257889999988776 778999998642  


Q ss_pred             CCCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEE
Q 022592          201 GINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVS  255 (294)
Q Consensus       201 ~~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~  255 (294)
                       .++..++++++++|+|||.+++....         .....+..+.+..|+.+..
T Consensus       122 -~~~~~~l~~~~~~LkpGG~lv~~~~~---------~~~~~l~~~~~~~~~~~~~  166 (187)
T PRK00107        122 -ASLSDLVELCLPLLKPGGRFLALKGR---------DPEEEIAELPKALGGKVEE  166 (187)
T ss_pred             -cCHHHHHHHHHHhcCCCeEEEEEeCC---------ChHHHHHHHHHhcCceEee
Confidence             47789999999999999999997532         1346788888888998766

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.45  E-value=1.2e-13  Score=107.02  Aligned_cols=84  Identities=24%  Similarity=0.435  Sum_probs=68.8

Q ss_pred             CCCEEEEEcCcccHHHHHhc-----cceEEEeccC----------------CCCcEEEccC-CCCCCCCCCccEEEEcc-
Q 022592          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS----------------NDPSVIACDM-SNTPLNSSSVDVAVFCL-  197 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~----------------~~~~~~~~d~-~~lp~~~~~fD~Vi~~~-  197 (294)
                      |+.+|||||||+|.++..++     .+|+|+|+|+                +++.++.+|+ ..... .+.||+|++.. 
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~~~   79 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDF-LEPFDLVICSGF   79 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTT-SSCEEEEEECSG
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCccc-CCCCCEEEECCC
Confidence            46799999999999988886     3899999997                5788999999 33333 35699999999 


Q ss_pred             cccC-C---CHHHHHHHHHHhcCcCcEEEEEe
Q 022592          198 SLMG-I---NFPNYLQEAQRVLKPSGWLLIAE  225 (294)
Q Consensus       198 ~l~~-~---~~~~~l~el~r~LkpgG~l~i~e  225 (294)
                      ++++ .   +...+++.+.+.|+|||+|++.+
T Consensus        80 ~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~  111 (112)
T PF12847_consen   80 TLHFLLPLDERRRVLERIRRLLKPGGRLVINT  111 (112)
T ss_dssp             SGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence            5554 2   45789999999999999999864

...

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.45  E-value=6.8e-13  Score=128.41  Aligned_cols=126  Identities=17%  Similarity=0.250  Sum_probs=97.3

Q ss_pred             HHHHHHHhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccC-------------CCCcEEEccCC--CCCCCCCCc
Q 022592          129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS-------------NDPSVIACDMS--NTPLNSSSV  190 (294)
Q Consensus       129 ~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~-------------~~~~~~~~d~~--~lp~~~~~f  190 (294)
                      ...++..+... ++.+|||||||+|.++..++   ..|+|+|+++             .++.++++|+.  .+++++++|
T Consensus        26 ~~~il~~l~~~-~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~f  104 (475)
T PLN02336         26 RPEILSLLPPY-EGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGSV  104 (475)
T ss_pred             hhHHHhhcCcc-CCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCCE
Confidence            34566666543 45699999999999999887   4799999987             25678888986  467788899


Q ss_pred             cEEEEcccccCCC---HHHHHHHHHHhcCcCcEEEEEeecCCCC-------CCCCCCCHHHHHHHHHHCCCeEEE
Q 022592          191 DVAVFCLSLMGIN---FPNYLQEAQRVLKPSGWLLIAEVKSRFD-------PNTGGADPNKFSKAVCDLGFAPVS  255 (294)
Q Consensus       191 D~Vi~~~~l~~~~---~~~~l~el~r~LkpgG~l~i~e~~~~~~-------~~~~~~~~~~~~~~l~~~Gf~~~~  255 (294)
                      |+|++..+++|..   ...++.++.++|+|||.+++.|......       ..........+..++.++||....
T Consensus       105 D~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~  179 (475)
T PLN02336        105 DLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKRKNNPTHYREPRFYTKVFKECHTRDED  179 (475)
T ss_pred             EEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccccCCCCeecChHHHHHHHHHheeccCC
Confidence            9999999999953   5689999999999999999987432111       011123577889999999997764

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.44  E-value=5.2e-12  Score=106.57  Aligned_cols=127  Identities=15%  Similarity=0.207  Sum_probs=93.2

Q ss_pred             HHHHhhccCCCCEEEEEcCcccHHHHHhcc---ceEEEeccCC--------------CCcEEEccCCCCCCCCCCccEEE
Q 022592          132 IVKWLKDHSPSLVIADFGCGDARLAKSVKN---KVFSFDLVSN--------------DPSVIACDMSNTPLNSSSVDVAV  194 (294)
Q Consensus       132 ~~~~l~~~~~~~~VLDiGcG~G~~~~~l~~---~v~gvD~s~~--------------~~~~~~~d~~~lp~~~~~fD~Vi  194 (294)
                      +...+... ++.+|||+|||+|.++..++.   .|+++|+++.              ++.++.+|+...+  .++||+|+
T Consensus        11 l~~~l~~~-~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~~~fD~Vi   87 (179)
T TIGR00537        11 LEANLREL-KPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV--RGKFDVIL   87 (179)
T ss_pred             HHHHHHhc-CCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc--CCcccEEE
Confidence            44444444 456899999999999888873   6999999982              3567778876644  35899999


Q ss_pred             EcccccCCC----------------------HHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCe
Q 022592          195 FCLSLMGIN----------------------FPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFA  252 (294)
Q Consensus       195 ~~~~l~~~~----------------------~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~  252 (294)
                      ++..+++.+                      ...++.++.++|+|||.+++......        ...++...|++.||.
T Consensus        88 ~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~--------~~~~~~~~l~~~gf~  159 (179)
T TIGR00537        88 FNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN--------GEPDTFDKLDERGFR  159 (179)
T ss_pred             ECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC--------ChHHHHHHHHhCCCe
Confidence            998776531                      24679999999999999999763221        257889999999999


Q ss_pred             EEEEeccCCeEEEEEEE
Q 022592          253 PVSKDFSNKMFIMFYFK  269 (294)
Q Consensus       253 ~~~~~~~~~~f~~i~~~  269 (294)
                      ..........+.-+...
T Consensus       160 ~~~~~~~~~~~~~~~~~  176 (179)
T TIGR00537       160 YEIVAERGLFFEELFAI  176 (179)
T ss_pred             EEEEEEeecCceEEEEE
Confidence            88865554444444433

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=99.44  E-value=2e-12  Score=110.51  Aligned_cols=126  Identities=18%  Similarity=0.320  Sum_probs=91.4

Q ss_pred             HHHHHHhhccCCCCEEEEEcCcccHHHHHhc----cceEEEeccC--------CCCcEEEccCCC-C-CCCCCCccEEEE
Q 022592          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS--------NDPSVIACDMSN-T-PLNSSSVDVAVF  195 (294)
Q Consensus       130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~--------~~~~~~~~d~~~-l-p~~~~~fD~Vi~  195 (294)
                      +.+.+.+.   ++.+|||||||+|.++..++    ..++|+|+++        .++.++.+|+.. + ++++++||+|++
T Consensus         5 ~~i~~~i~---~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~~~~~~~~d~~~~l~~~~~~sfD~Vi~   81 (194)
T TIGR02081         5 ESILNLIP---PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVARGVNVIQGDLDEGLEAFPDKSFDYVIL   81 (194)
T ss_pred             HHHHHhcC---CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHcCCeEEEEEhhhcccccCCCCcCEEEE
Confidence            44555553   55799999999999988775    2679999987        357788899875 4 477789999999


Q ss_pred             cccccCC-CHHHHHHHHHHhcCcCcEEEEEee----------cC------------CCC-CCCCCCCHHHHHHHHHHCCC
Q 022592          196 CLSLMGI-NFPNYLQEAQRVLKPSGWLLIAEV----------KS------------RFD-PNTGGADPNKFSKAVCDLGF  251 (294)
Q Consensus       196 ~~~l~~~-~~~~~l~el~r~LkpgG~l~i~e~----------~~------------~~~-~~~~~~~~~~~~~~l~~~Gf  251 (294)
                      +.+++|. ++..+++++.|+++++ .+.+..+          ..            .+. +....++.+++.++++++||
T Consensus        82 ~~~l~~~~d~~~~l~e~~r~~~~~-ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~Gf  160 (194)
T TIGR02081        82 SQTLQATRNPEEILDEMLRVGRHA-IVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELNL  160 (194)
T ss_pred             hhHhHcCcCHHHHHHHHHHhCCeE-EEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCCC
Confidence            9999995 8899999998887653 1111100          00            000 11224689999999999999


Q ss_pred             eEEEEecc
Q 022592          252 APVSKDFS  259 (294)
Q Consensus       252 ~~~~~~~~  259 (294)
                      +++.....
T Consensus       161 ~v~~~~~~  168 (194)
T TIGR02081       161 RILDRAAF  168 (194)
T ss_pred             EEEEEEEe
Confidence            99885543

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=99.44  E-value=2.4e-12  Score=112.91  Aligned_cols=117  Identities=14%  Similarity=0.239  Sum_probs=90.5

Q ss_pred             CCCEEEEEcCcccHHHHHhc---cceEEEeccCC--------------CCcEEEccCCCCC-CCCCCccEEEEcccccCC
Q 022592          141 PSLVIADFGCGDARLAKSVK---NKVFSFDLVSN--------------DPSVIACDMSNTP-LNSSSVDVAVFCLSLMGI  202 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~~--------------~~~~~~~d~~~lp-~~~~~fD~Vi~~~~l~~~  202 (294)
                      ++.+|||||||+|.++..+.   ..++++|+++.              .+.+..+|+...+ ...+.||+|++..+++|.
T Consensus        48 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~~  127 (233)
T PRK05134         48 FGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEHV  127 (233)
T ss_pred             CCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhhcc
Confidence            56799999999999887775   47999999872              2456666666554 345789999999999985


Q ss_pred             -CHHHHHHHHHHhcCcCcEEEEEeecCCCC---------------------CCCCCCCHHHHHHHHHHCCCeEEEEe
Q 022592          203 -NFPNYLQEAQRVLKPSGWLLIAEVKSRFD---------------------PNTGGADPNKFSKAVCDLGFAPVSKD  257 (294)
Q Consensus       203 -~~~~~l~el~r~LkpgG~l~i~e~~~~~~---------------------~~~~~~~~~~~~~~l~~~Gf~~~~~~  257 (294)
                       ++..++..+.++|+|||.+++..+.....                     .....++.+++.++++++||+++...
T Consensus       128 ~~~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~v~~~  204 (233)
T PRK05134        128 PDPASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGLEVQDIT  204 (233)
T ss_pred             CCHHHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCCeEeeee
Confidence             88899999999999999999875432110                     01123588899999999999998753

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=99.44  E-value=2.2e-12  Score=111.68  Aligned_cols=115  Identities=16%  Similarity=0.229  Sum_probs=83.9

Q ss_pred             HHHHhhccCCCCEEEEEcCcccHHHHHhc------cceEEEeccC----CCCcEEEccCCCCC--------CCCCCccEE
Q 022592          132 IVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----NDPSVIACDMSNTP--------LNSSSVDVA  193 (294)
Q Consensus       132 ~~~~l~~~~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~----~~~~~~~~d~~~lp--------~~~~~fD~V  193 (294)
                      +...+....++.+|||||||+|.++..++      ..|+|+|+++    +++.++++|+.+.+        +.+++||+|
T Consensus        42 ~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V  121 (209)
T PRK11188         42 IQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMDPIVGVDFLQGDFRDELVLKALLERVGDSKVQVV  121 (209)
T ss_pred             HHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccccCCCCcEEEecCCCChHHHHHHHHHhCCCCCCEE
Confidence            34444433467799999999999988775      3799999987    46889999998853        667889999


Q ss_pred             EEcccccCC-CH-----------HHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEE
Q 022592          194 VFCLSLMGI-NF-----------PNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVS  255 (294)
Q Consensus       194 i~~~~l~~~-~~-----------~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~  255 (294)
                      ++..+.++. ++           ..++.++.++|+|||.|++..+...        ...++...+.. +|..++
T Consensus       122 ~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~--------~~~~~l~~l~~-~f~~v~  186 (209)
T PRK11188        122 MSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGE--------GFDEYLREIRS-LFTKVK  186 (209)
T ss_pred             ecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCc--------CHHHHHHHHHh-CceEEE
Confidence            998877653 21           3589999999999999999765431        22444443333 676666

>PRK04266 fibrillarin; Provisional

Probab=99.43  E-value=4.4e-12  Score=110.93  Aligned_cols=127  Identities=15%  Similarity=0.156  Sum_probs=85.9

Q ss_pred             CCCCEEEEEcCcccHHHHHhcc-----ceEEEeccC-------------CCCcEEEccCCCC----CCCCCCccEEEEcc
Q 022592          140 SPSLVIADFGCGDARLAKSVKN-----KVFSFDLVS-------------NDPSVIACDMSNT----PLNSSSVDVAVFCL  197 (294)
Q Consensus       140 ~~~~~VLDiGcG~G~~~~~l~~-----~v~gvD~s~-------------~~~~~~~~d~~~l----p~~~~~fD~Vi~~~  197 (294)
                      .++.+|||+|||+|.++..++.     .|+|+|+++             .++.++.+|+...    ++ .++||+|++..
T Consensus        71 ~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l-~~~~D~i~~d~  149 (226)
T PRK04266         71 KKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHV-VEKVDVIYQDV  149 (226)
T ss_pred             CCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhc-cccCCEEEECC
Confidence            3678999999999999888862     699999997             3678888888652    22 25699998643


Q ss_pred             cccCC-CHHHHHHHHHHhcCcCcEEEEE-eecCCCCCCCC-CCCHHHHHHHHHHCCCeEEEEeccCCe---EEEEEEEE
Q 022592          198 SLMGI-NFPNYLQEAQRVLKPSGWLLIA-EVKSRFDPNTG-GADPNKFSKAVCDLGFAPVSKDFSNKM---FIMFYFKK  270 (294)
Q Consensus       198 ~l~~~-~~~~~l~el~r~LkpgG~l~i~-e~~~~~~~~~~-~~~~~~~~~~l~~~Gf~~~~~~~~~~~---f~~i~~~k  270 (294)
                      .  .. ....++.++.++|||||.++|+ .+. ..+.... .....+..+.++++||+++.......+   ++++++++
T Consensus       150 ~--~p~~~~~~L~~~~r~LKpGG~lvI~v~~~-~~d~~~~~~~~~~~~~~~l~~aGF~~i~~~~l~p~~~~h~~~v~~~  225 (226)
T PRK04266        150 A--QPNQAEIAIDNAEFFLKDGGYLLLAIKAR-SIDVTKDPKEIFKEEIRKLEEGGFEILEVVDLEPYHKDHAAVVARK  225 (226)
T ss_pred             C--ChhHHHHHHHHHHHhcCCCcEEEEEEecc-cccCcCCHHHHHHHHHHHHHHcCCeEEEEEcCCCCcCCeEEEEEEc
Confidence            2  11 1235689999999999999994 221 1111000 011234569999999999986554333   56666654

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=99.42  E-value=4.2e-13  Score=112.85  Aligned_cols=91  Identities=26%  Similarity=0.351  Sum_probs=77.4

Q ss_pred             HhhccCCCCEEEEEcCcccHHHHHhc----cceEEEeccC---------------CCCc-EEEccCCCCC-CCCCCccEE
Q 022592          135 WLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS---------------NDPS-VIACDMSNTP-LNSSSVDVA  193 (294)
Q Consensus       135 ~l~~~~~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~---------------~~~~-~~~~d~~~lp-~~~~~fD~V  193 (294)
                      ++... ....||+||||||..-.+..    ..|+++|+++               .++. |++++.+++| +++++||.|
T Consensus        71 ~~gk~-~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtV  149 (252)
T KOG4300|consen   71 FLGKS-GKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTV  149 (252)
T ss_pred             Hhccc-CccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeE
Confidence            44433 33478999999999887775    4899999998               2444 8899999998 899999999


Q ss_pred             EEcccccC-CCHHHHHHHHHHhcCcCcEEEEEee
Q 022592          194 VFCLSLMG-INFPNYLQEAQRVLKPSGWLLIAEV  226 (294)
Q Consensus       194 i~~~~l~~-~~~~~~l~el~r~LkpgG~l~i~e~  226 (294)
                      |+.++|.- .++.+.|+++.|+|+|||++++.|.
T Consensus       150 V~TlvLCSve~~~k~L~e~~rlLRpgG~iifiEH  183 (252)
T KOG4300|consen  150 VCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFIEH  183 (252)
T ss_pred             EEEEEEeccCCHHHHHHHHHHhcCCCcEEEEEec
Confidence            99999985 6999999999999999999999873

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.41  E-value=5e-12  Score=115.61  Aligned_cols=121  Identities=20%  Similarity=0.284  Sum_probs=90.0

Q ss_pred             HHHHhhccCCCCEEEEEcCcccHHHHHhc-----cceEEEeccC---------------CCCcEEEccCCCCCCCCCCcc
Q 022592          132 IVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVD  191 (294)
Q Consensus       132 ~~~~l~~~~~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~---------------~~~~~~~~d~~~lp~~~~~fD  191 (294)
                      +++.+.. .+..+|||||||+|.++..++     .+++++|+..               ++++++.+|+...+++.  +|
T Consensus       141 l~~~~~~-~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~--~D  217 (306)
T TIGR02716       141 LLEEAKL-DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE--AD  217 (306)
T ss_pred             HHHHcCC-CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCCC--CC
Confidence            4444433 255799999999999998876     2688999743               35778999998766653  69


Q ss_pred             EEEEcccccCCCH---HHHHHHHHHhcCcCcEEEEEeecCCC--CCC-----------------CCCCCHHHHHHHHHHC
Q 022592          192 VAVFCLSLMGINF---PNYLQEAQRVLKPSGWLLIAEVKSRF--DPN-----------------TGGADPNKFSKAVCDL  249 (294)
Q Consensus       192 ~Vi~~~~l~~~~~---~~~l~el~r~LkpgG~l~i~e~~~~~--~~~-----------------~~~~~~~~~~~~l~~~  249 (294)
                      +|+++.++|+.+.   ..++++++++|+|||.++|.|+...-  .+.                 ......+++.++|+++
T Consensus       218 ~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ll~~a  297 (306)
T TIGR02716       218 AVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILESL  297 (306)
T ss_pred             EEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCchhhHHHHHHHHcccccccccCCCHHHHHHHHHHc
Confidence            9999999987543   47899999999999999999863211  110                 0112468899999999


Q ss_pred             CCeEEE
Q 022592          250 GFAPVS  255 (294)
Q Consensus       250 Gf~~~~  255 (294)
                      ||+.+.
T Consensus       298 Gf~~v~  303 (306)
T TIGR02716       298 GYKDVT  303 (306)
T ss_pred             CCCeeE
Confidence            998775

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.41  E-value=7e-12  Score=108.11  Aligned_cols=94  Identities=18%  Similarity=0.293  Sum_probs=74.6

Q ss_pred             HHHHhhccCCCCEEEEEcCcccHHHHHhc-----cceEEEeccC----------CCCcEEEccCCCCCCCCCCccEEEEc
Q 022592          132 IVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS----------NDPSVIACDMSNTPLNSSSVDVAVFC  196 (294)
Q Consensus       132 ~~~~l~~~~~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~----------~~~~~~~~d~~~lp~~~~~fD~Vi~~  196 (294)
                      +...+...+++.+|||||||+|.++..++     ..++|+|+|+          .++.+..+|+.. |+++++||+|++.
T Consensus        34 ~~~~l~~~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~-~~~~~sfD~V~~~  112 (204)
T TIGR03587        34 FARALNRLPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFD-PFKDNFFDLVLTK  112 (204)
T ss_pred             HHHHHHhcCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccC-CCCCCCEEEEEEC
Confidence            33334334456789999999999888775     3699999998          356788899888 8889999999999


Q ss_pred             ccccCCC---HHHHHHHHHHhcCcCcEEEEEeecC
Q 022592          197 LSLMGIN---FPNYLQEAQRVLKPSGWLLIAEVKS  228 (294)
Q Consensus       197 ~~l~~~~---~~~~l~el~r~LkpgG~l~i~e~~~  228 (294)
                      .+|+|.+   ...+++++.|++  ++.++|.++..
T Consensus       113 ~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~  145 (204)
T TIGR03587       113 GVLIHINPDNLPTAYRELYRCS--NRYILIAEYYN  145 (204)
T ss_pred             ChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEeeC
Confidence            9999964   467888888887  57888888654

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.40  E-value=5.8e-12  Score=110.08  Aligned_cols=126  Identities=19%  Similarity=0.244  Sum_probs=87.0

Q ss_pred             HHHHHHhhc--cCCCCEEEEEcCcccHHHHHhc---cceEEEeccC----------------CCCcEEEccCCCCCCCCC
Q 022592          130 NIIVKWLKD--HSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS----------------NDPSVIACDMSNTPLNSS  188 (294)
Q Consensus       130 ~~~~~~l~~--~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~----------------~~~~~~~~d~~~lp~~~~  188 (294)
                      ..++.++..  ..++.+|||||||+|.++..++   ..|+|+|+|+                .++.+..+|+   +..++
T Consensus        50 ~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~---~~~~~  126 (230)
T PRK07580         50 DTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDL---ESLLG  126 (230)
T ss_pred             HHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCc---hhccC
Confidence            345566654  3356799999999999988886   3799999986                1466777774   33467


Q ss_pred             CccEEEEcccccCC---CHHHHHHHHHHhcCcCcEEEEEeec----------CCCC-----CCCCCCCHHHHHHHHHHCC
Q 022592          189 SVDVAVFCLSLMGI---NFPNYLQEAQRVLKPSGWLLIAEVK----------SRFD-----PNTGGADPNKFSKAVCDLG  250 (294)
Q Consensus       189 ~fD~Vi~~~~l~~~---~~~~~l~el~r~LkpgG~l~i~e~~----------~~~~-----~~~~~~~~~~~~~~l~~~G  250 (294)
                      +||+|++..+++|.   +...++..+.+.+++++.+.+....          ..+.     .....++..++.++++.+|
T Consensus       127 ~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~G  206 (230)
T PRK07580        127 RFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSLIFTFAPYTPLLALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAG  206 (230)
T ss_pred             CcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEEEECCccHHHHHHHHhccccCCccCCCCccccCHHHHHHHHHHCC
Confidence            89999999999874   3457788888877554444332110          0110     1112357889999999999


Q ss_pred             CeEEEEec
Q 022592          251 FAPVSKDF  258 (294)
Q Consensus       251 f~~~~~~~  258 (294)
                      |++.....
T Consensus       207 f~~~~~~~  214 (230)
T PRK07580        207 FKVVRTER  214 (230)
T ss_pred             CceEeeee
Confidence            99988544

>PRK06922 hypothetical protein; Provisional

Probab=99.40  E-value=1.5e-12  Score=127.43  Aligned_cols=122  Identities=26%  Similarity=0.415  Sum_probs=86.6

Q ss_pred             HHHHHhcChhhHHHHHHh--HHhhhccCCCcHHHHHHHHhhccCCCCEEEEEcCcccHHHHHhc-----cceEEEeccCC
Q 022592           99 ALDYFNENPALFDMYHSG--YQEQMSHWPELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVSN  171 (294)
Q Consensus        99 ~~~~~~~~~~~~d~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~~  171 (294)
                      .+++|...++.++.+...  |......+    ...... +....++.+|||||||+|.++..++     ..|+|+|+|+.
T Consensus       379 ~fd~fg~r~D~~dRf~~~~~yle~m~~~----~~~k~~-i~d~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~  453 (677)
T PRK06922        379 LFDFFGLRKDAYDRFHNEEVYLEHMNSS----ADDKRI-ILDYIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISEN  453 (677)
T ss_pred             HHHHhccChhhHhHHHhHHHHHHhcccc----HHHHHH-HhhhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHH
Confidence            345666666667665532  22222221    111112 2222256799999999999887765     38999999982


Q ss_pred             --------------CCcEEEccCCCCC--CCCCCccEEEEcccccCC--------------CHHHHHHHHHHhcCcCcEE
Q 022592          172 --------------DPSVIACDMSNTP--LNSSSVDVAVFCLSLMGI--------------NFPNYLQEAQRVLKPSGWL  221 (294)
Q Consensus       172 --------------~~~~~~~d~~~lp--~~~~~fD~Vi~~~~l~~~--------------~~~~~l~el~r~LkpgG~l  221 (294)
                                    ++.++++|+.++|  +++++||+|+++.++|+.              +...++++++++|||||.+
T Consensus       454 MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrL  533 (677)
T PRK06922        454 VIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRI  533 (677)
T ss_pred             HHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEE
Confidence                          3466888998887  788999999999988852              3468999999999999999


Q ss_pred             EEEe
Q 022592          222 LIAE  225 (294)
Q Consensus       222 ~i~e  225 (294)
                      ++.+
T Consensus       534 II~D  537 (677)
T PRK06922        534 IIRD  537 (677)
T ss_pred             EEEe
Confidence            9986

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.38  E-value=4.2e-12  Score=119.44  Aligned_cols=122  Identities=21%  Similarity=0.283  Sum_probs=88.9

Q ss_pred             HHHHhhccCCCCEEEEEcCcccHHHHHhc----cceEEEeccCC------------CCcEEEccCCCCCCCCCCccEEEE
Q 022592          132 IVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVSN------------DPSVIACDMSNTPLNSSSVDVAVF  195 (294)
Q Consensus       132 ~~~~l~~~~~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~~------------~~~~~~~d~~~lp~~~~~fD~Vi~  195 (294)
                      +++.+... ++.+|||||||+|.++..++    ..|+|+|+|+.            .+.+..+|...+   +++||+|++
T Consensus       159 l~~~l~l~-~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l---~~~fD~Ivs  234 (383)
T PRK11705        159 ICRKLQLK-PGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDL---NGQFDRIVS  234 (383)
T ss_pred             HHHHhCCC-CCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhc---CCCCCEEEE
Confidence            44444333 67799999999999988776    37999999982            345666666554   468999999


Q ss_pred             cccccCC---CHHHHHHHHHHhcCcCcEEEEEeecCCCC-------------CCCCCCCHHHHHHHHHHCCCeEEEEec
Q 022592          196 CLSLMGI---NFPNYLQEAQRVLKPSGWLLIAEVKSRFD-------------PNTGGADPNKFSKAVCDLGFAPVSKDF  258 (294)
Q Consensus       196 ~~~l~~~---~~~~~l~el~r~LkpgG~l~i~e~~~~~~-------------~~~~~~~~~~~~~~l~~~Gf~~~~~~~  258 (294)
                      ..+++|.   ++..+++++.++|+|||.+++..+.....             |.....+..++..+++ .||.+..+..
T Consensus       235 ~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~~~~~~i~~yifp~g~lps~~~i~~~~~-~~~~v~d~~~  312 (383)
T PRK11705        235 VGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDTNVDPWINKYIFPNGCLPSVRQIAQASE-GLFVMEDWHN  312 (383)
T ss_pred             eCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCCCCCCCceeeecCCCcCCCHHHHHHHHH-CCcEEEEEec
Confidence            9999985   45789999999999999999976532211             1111246778777766 5898887543

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.38  E-value=8.7e-12  Score=105.56  Aligned_cols=105  Identities=16%  Similarity=0.183  Sum_probs=79.8

Q ss_pred             CCCEEEEEcCcccHHHHHhc-----cceEEEeccC---------------CCCcEEEccCCCCCCCCCCccEEEEccccc
Q 022592          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLM  200 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~---------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~  200 (294)
                      ++.+|||||||+|.++..++     .+|+|+|+++               .++.++.+|+.+++ ..++||+|++.. + 
T Consensus        42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~-~-  118 (181)
T TIGR00138        42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA-L-  118 (181)
T ss_pred             CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc-ccCCccEEEehh-h-
Confidence            46799999999999877765     3799999997               25788999998874 357899999875 2 


Q ss_pred             CCCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHH---CCCeEEEEec
Q 022592          201 GINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCD---LGFAPVSKDF  258 (294)
Q Consensus       201 ~~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~---~Gf~~~~~~~  258 (294)
                       .+...++..+.++|+|||.+++..-         .....++..+.++   .||+.+....
T Consensus       119 -~~~~~~~~~~~~~LkpgG~lvi~~~---------~~~~~~~~~~~e~~~~~~~~~~~~~~  169 (181)
T TIGR00138       119 -ASLNVLLELTLNLLKVGGYFLAYKG---------KKYLDEIEEAKRKCQVLGVEPLEVPP  169 (181)
T ss_pred             -hCHHHHHHHHHHhcCCCCEEEEEcC---------CCcHHHHHHHHHhhhhcCceEeeccc
Confidence             3567788899999999999998631         1133555555555   7999888543

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.38  E-value=1.1e-12  Score=112.97  Aligned_cols=106  Identities=14%  Similarity=0.122  Sum_probs=83.1

Q ss_pred             CCCEEEEEcCcccHHHHHhc-----cceEEEeccC---------------CCCcEEEccC-CCCC--CCCCCccEEEEcc
Q 022592          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDM-SNTP--LNSSSVDVAVFCL  197 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~---------------~~~~~~~~d~-~~lp--~~~~~fD~Vi~~~  197 (294)
                      ++.+|||||||+|.++..++     ..|+|+|+|+               .++.++++|+ ..++  +++++||+|++.+
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~  119 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF  119 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence            45689999999999988775     3799999997               3577899998 6666  7778999999876


Q ss_pred             cccCC---------CHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEE
Q 022592          198 SLMGI---------NFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPV  254 (294)
Q Consensus       198 ~l~~~---------~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~  254 (294)
                      ...+.         ....+++++.++|+|||.|+++.....        ....+.+.++..||.+.
T Consensus       120 ~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~--------~~~~~~~~~~~~g~~~~  177 (202)
T PRK00121        120 PDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEG--------YAEYMLEVLSAEGGFLV  177 (202)
T ss_pred             CCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHH--------HHHHHHHHHHhCccccc
Confidence            65431         247899999999999999999742221        23577888899998665

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.37  E-value=1.1e-11  Score=107.84  Aligned_cols=146  Identities=12%  Similarity=0.103  Sum_probs=98.3

Q ss_pred             hhhHHHHHHhHHhhhccCC-CcHHHHHHHHhhcc--CCCCEEEEEcCcccHHHHHhcc---ceEEEeccCC---------
Q 022592          107 PALFDMYHSGYQEQMSHWP-ELPVNIIVKWLKDH--SPSLVIADFGCGDARLAKSVKN---KVFSFDLVSN---------  171 (294)
Q Consensus       107 ~~~~d~~~~~~~~~~~~~~-~~~~~~~~~~l~~~--~~~~~VLDiGcG~G~~~~~l~~---~v~gvD~s~~---------  171 (294)
                      ++.|+.   .|......|. ..+-..+.+++...  +++.+|||+|||.|..+..|+.   .|+|+|+|+.         
T Consensus         3 ~~~Wd~---rw~~~~~~~~~~~p~~~L~~~~~~~~~~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~~~   79 (218)
T PRK13255          3 PDFWHE---KWAENQIGFHQEEVNPLLQKYWPALALPAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFAEN   79 (218)
T ss_pred             HhHHHH---HHcCCCCCCCCCCCCHHHHHHHHhhCCCCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHHHc
Confidence            344555   2333334564 44444455555321  3557999999999999999983   8999999972         


Q ss_pred             ------------------CCcEEEccCCCCCCC-CCCccEEEEcccccCCC---HHHHHHHHHHhcCcCcEEEEEeec-C
Q 022592          172 ------------------DPSVIACDMSNTPLN-SSSVDVAVFCLSLMGIN---FPNYLQEAQRVLKPSGWLLIAEVK-S  228 (294)
Q Consensus       172 ------------------~~~~~~~d~~~lp~~-~~~fD~Vi~~~~l~~~~---~~~~l~el~r~LkpgG~l~i~e~~-~  228 (294)
                                        ++.+.++|+.+++.. .+.||+|+-..+++|.+   +..++..+.++|+|||.++++... .
T Consensus        80 ~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~  159 (218)
T PRK13255         80 GLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYP  159 (218)
T ss_pred             CCCccccccccccccccCceEEEECcccCCCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeC
Confidence                              245678899887543 25799999999988863   568999999999999975553322 1


Q ss_pred             CCCCCC--CCCCHHHHHHHHHHCCCeEEEE
Q 022592          229 RFDPNT--GGADPNKFSKAVCDLGFAPVSK  256 (294)
Q Consensus       229 ~~~~~~--~~~~~~~~~~~l~~~Gf~~~~~  256 (294)
                      ......  ..++.+++.+++.. +|.+...
T Consensus       160 ~~~~~gPp~~~~~~el~~~~~~-~~~i~~~  188 (218)
T PRK13255        160 QEELAGPPFSVSDEEVEALYAG-CFEIELL  188 (218)
T ss_pred             CccCCCCCCCCCHHHHHHHhcC-CceEEEe
Confidence            111111  13688999998863 3766653

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.37  E-value=9e-13  Score=100.12  Aligned_cols=76  Identities=25%  Similarity=0.375  Sum_probs=48.0

Q ss_pred             EEEcCcccHHHHHhc-----cceEEEeccCCCC---------------cEEEccCCCCC--CCCCCccEEEEcccccCC-
Q 022592          146 ADFGCGDARLAKSVK-----NKVFSFDLVSNDP---------------SVIACDMSNTP--LNSSSVDVAVFCLSLMGI-  202 (294)
Q Consensus       146 LDiGcG~G~~~~~l~-----~~v~gvD~s~~~~---------------~~~~~d~~~lp--~~~~~fD~Vi~~~~l~~~-  202 (294)
                      ||||||+|.++..+.     .+++|+|+|+..+               .....+..+..  ...++||+|+++.++||. 
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~   80 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE   80 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence            799999999888775     3789999999433               12222222221  112589999999999996 


Q ss_pred             CHHHHHHHHHHhcCcCcEE
Q 022592          203 NFPNYLQEAQRVLKPSGWL  221 (294)
Q Consensus       203 ~~~~~l~el~r~LkpgG~l  221 (294)
                      ++..+++.+.++|+|||+|
T Consensus        81 ~~~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   81 DIEAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             -HHHHHHHHTTT-TSS-EE
T ss_pred             hHHHHHHHHHHHcCCCCCC
Confidence            8999999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.36  E-value=3.4e-12  Score=108.28  Aligned_cols=121  Identities=17%  Similarity=0.217  Sum_probs=85.5

Q ss_pred             HHHHhhccCCCCEEEEEcCcccHHHHHhcc---ceEEEeccC--------------CCCcEEEccCCCCCCCCCCccEEE
Q 022592          132 IVKWLKDHSPSLVIADFGCGDARLAKSVKN---KVFSFDLVS--------------NDPSVIACDMSNTPLNSSSVDVAV  194 (294)
Q Consensus       132 ~~~~l~~~~~~~~VLDiGcG~G~~~~~l~~---~v~gvD~s~--------------~~~~~~~~d~~~lp~~~~~fD~Vi  194 (294)
                      +++.+... +..++||+|||.|+.+.+|+.   .|+++|.|+              -.+...+.|+....++ +.||+|+
T Consensus        22 v~~a~~~~-~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~I~   99 (192)
T PF03848_consen   22 VLEAVPLL-KPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFP-EEYDFIV   99 (192)
T ss_dssp             HHHHCTTS--SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-T-TTEEEEE
T ss_pred             HHHHHhhc-CCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhcccc-CCcCEEE
Confidence            44444444 456999999999999999983   899999998              1466788899887775 6799999


Q ss_pred             EcccccCC---CHHHHHHHHHHhcCcCcEEEEEeecCCCCCCC-----CCCCHHHHHHHHHHCCCeEEEE
Q 022592          195 FCLSLMGI---NFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNT-----GGADPNKFSKAVCDLGFAPVSK  256 (294)
Q Consensus       195 ~~~~l~~~---~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~-----~~~~~~~~~~~l~~~Gf~~~~~  256 (294)
                      +..+++|.   ..+.+++.+...++|||++++..+........     -.+...++...+.  ||+++.-
T Consensus       100 st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p~~~~~~f~~~~~EL~~~y~--dW~il~y  167 (192)
T PF03848_consen  100 STVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFMETPDYPCPSPFPFLLKPGELREYYA--DWEILKY  167 (192)
T ss_dssp             EESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS--SS--S--B-TTHHHHHTT--TSEEEEE
T ss_pred             EEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEecccCCCCCCCCCCcccCHHHHHHHhC--CCeEEEE
Confidence            99899885   35678999999999999999865433211111     1135566776666  7988773

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=99.35  E-value=9.1e-12  Score=108.46  Aligned_cols=117  Identities=17%  Similarity=0.281  Sum_probs=91.2

Q ss_pred             CCCEEEEEcCcccHHHHHhc---cceEEEeccCC---------------CCcEEEccCCCCCCC-CCCccEEEEcccccC
Q 022592          141 PSLVIADFGCGDARLAKSVK---NKVFSFDLVSN---------------DPSVIACDMSNTPLN-SSSVDVAVFCLSLMG  201 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~~---------------~~~~~~~d~~~lp~~-~~~fD~Vi~~~~l~~  201 (294)
                      .+.+|||+|||+|.++..++   ..++++|+++.               ++.+...|+...+.. .++||+|++..+++|
T Consensus        45 ~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~~  124 (224)
T TIGR01983        45 FGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLEH  124 (224)
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHHHh
Confidence            46799999999999888775   47999999861               366777777766544 378999999999998


Q ss_pred             C-CHHHHHHHHHHhcCcCcEEEEEeecCCC----------------CCC-----CCCCCHHHHHHHHHHCCCeEEEEe
Q 022592          202 I-NFPNYLQEAQRVLKPSGWLLIAEVKSRF----------------DPN-----TGGADPNKFSKAVCDLGFAPVSKD  257 (294)
Q Consensus       202 ~-~~~~~l~el~r~LkpgG~l~i~e~~~~~----------------~~~-----~~~~~~~~~~~~l~~~Gf~~~~~~  257 (294)
                      . ++..++.++.++|+|||.+++.......                .+.     ...++..++.++++++||++++..
T Consensus       125 ~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~i~~~~  202 (224)
T TIGR01983       125 VPDPQAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESAGLRVKDVK  202 (224)
T ss_pred             CCCHHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHcCCeeeeee
Confidence            5 8899999999999999999987643211                000     112477899999999999998854

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.35  E-value=7.9e-12  Score=105.32  Aligned_cols=130  Identities=14%  Similarity=0.210  Sum_probs=88.0

Q ss_pred             CCCEEEEEcCcccHHHHHhc---cceEEEeccC-------------CCCcEEEccCCCCCCCCCCccEEEEcccccCCC-
Q 022592          141 PSLVIADFGCGDARLAKSVK---NKVFSFDLVS-------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGIN-  203 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~-------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~~-  203 (294)
                      .-.++||+|||.|.++..|+   ..++++|+|+             +++.+++.|+... .|+++||+|+++.++++.+ 
T Consensus        43 ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~-~P~~~FDLIV~SEVlYYL~~  121 (201)
T PF05401_consen   43 RYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAGLPHVEWIQADVPEF-WPEGRFDLIVLSEVLYYLDD  121 (201)
T ss_dssp             SEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT----SS-EEEEEEES-GGGSSS
T ss_pred             ccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCC-CCCCCeeEEEEehHhHcCCC
Confidence            34589999999999999998   4899999997             5789999999775 3678999999999999863 


Q ss_pred             ---HHHHHHHHHHhcCcCcEEEEEeecCCC-CCCCCCCCHHHHHHHHHHCCCeEEE-----EeccCCeEEEEEEEECC
Q 022592          204 ---FPNYLQEAQRVLKPSGWLLIAEVKSRF-DPNTGGADPNKFSKAVCDLGFAPVS-----KDFSNKMFIMFYFKKKE  272 (294)
Q Consensus       204 ---~~~~l~el~r~LkpgG~l~i~e~~~~~-~~~~~~~~~~~~~~~l~~~Gf~~~~-----~~~~~~~f~~i~~~k~~  272 (294)
                         ...++..+...|.|||.|++..+.... ......+..+++..+|.+. |..++     -...+..-.+.-|++..
T Consensus       122 ~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (201)
T PF05401_consen  122 AEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEH-LTEVERVECRGGSPNEDCLLARFRNPV  198 (201)
T ss_dssp             HHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHH-SEEEEEEEEE-SSTTSEEEEEEEE--S
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHH-hhheeEEEEcCCCCCCceEeeeecCCc
Confidence               347899999999999999998765421 1111235778899988875 44444     12345666666676653

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PTZ00146 fibrillarin; Provisional

Probab=99.34  E-value=6e-11  Score=106.59  Aligned_cols=128  Identities=16%  Similarity=0.135  Sum_probs=87.9

Q ss_pred             CCCCEEEEEcCcccHHHHHhc------cceEEEeccC-------------CCCcEEEccCCC---CCCCCCCccEEEEcc
Q 022592          140 SPSLVIADFGCGDARLAKSVK------NKVFSFDLVS-------------NDPSVIACDMSN---TPLNSSSVDVAVFCL  197 (294)
Q Consensus       140 ~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~-------------~~~~~~~~d~~~---lp~~~~~fD~Vi~~~  197 (294)
                      .++.+|||+|||+|.++..++      ..|+++|+++             .++.++.+|+..   .++..++||+|++..
T Consensus       131 kpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dv  210 (293)
T PTZ00146        131 KPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFADV  210 (293)
T ss_pred             CCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEEeC
Confidence            367899999999999988887      3699999986             377888889854   222345799999876


Q ss_pred             cccCCCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHH----HHHHHHCCCeEEEEec---cCCeEEEEEEEE
Q 022592          198 SLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKF----SKAVCDLGFAPVSKDF---SNKMFIMFYFKK  270 (294)
Q Consensus       198 ~l~~~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~----~~~l~~~Gf~~~~~~~---~~~~f~~i~~~k  270 (294)
                      . +..+...++.++.++|||||.|+|. +.....  ....+++++    .+.|+++||++++...   -...+.+++.+.
T Consensus       211 a-~pdq~~il~~na~r~LKpGG~~vI~-ika~~i--d~g~~pe~~f~~ev~~L~~~GF~~~e~v~L~Py~~~h~~v~~~~  286 (293)
T PTZ00146        211 A-QPDQARIVALNAQYFLKNGGHFIIS-IKANCI--DSTAKPEVVFASEVQKLKKEGLKPKEQLTLEPFERDHAVVIGVY  286 (293)
T ss_pred             C-CcchHHHHHHHHHHhccCCCEEEEE-Eecccc--ccCCCHHHHHHHHHHHHHHcCCceEEEEecCCccCCcEEEEEEE
Confidence            4 2224446667899999999999994 332221  223344554    4789999999777332   233344455444


Q ss_pred             C
Q 022592          271 K  271 (294)
Q Consensus       271 ~  271 (294)
                      .
T Consensus       287 ~  287 (293)
T PTZ00146        287 R  287 (293)
T ss_pred             c
Confidence            3

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.32  E-value=1.2e-12  Score=99.98  Aligned_cols=75  Identities=27%  Similarity=0.597  Sum_probs=61.9

Q ss_pred             EEEEcCcccHHHHHhc--------cceEEEeccC--------------CCCcEEEccCCCCCCCCCCccEEEEc-ccccC
Q 022592          145 IADFGCGDARLAKSVK--------NKVFSFDLVS--------------NDPSVIACDMSNTPLNSSSVDVAVFC-LSLMG  201 (294)
Q Consensus       145 VLDiGcG~G~~~~~l~--------~~v~gvD~s~--------------~~~~~~~~d~~~lp~~~~~fD~Vi~~-~~l~~  201 (294)
                      |||+|||+|..+..+.        ..++|+|+|+              ..++++++|+.++++.+++||+|+++ .+++|
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~   80 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH   80 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence            7999999999887765        4789999997              36789999999999888999999995 44888


Q ss_pred             CC---HHHHHHHHHHhcCcCc
Q 022592          202 IN---FPNYLQEAQRVLKPSG  219 (294)
Q Consensus       202 ~~---~~~~l~el~r~LkpgG  219 (294)
                      .+   ...+++++.++|+|||
T Consensus        81 ~~~~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   81 LSPEELEALLRRIARLLRPGG  101 (101)
T ss_dssp             SSHHHHHHHHHHHHHTEEEEE
T ss_pred             CCHHHHHHHHHHHHHHhCCCC
Confidence            64   5689999999999998

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=99.31  E-value=2.4e-11  Score=111.24  Aligned_cols=132  Identities=18%  Similarity=0.282  Sum_probs=87.4

Q ss_pred             HHHHHHHhhcc--CCCCEEEEEcCcccHHHHHhc---cceEEEeccCC--------------------CCcEEEccCCCC
Q 022592          129 VNIIVKWLKDH--SPSLVIADFGCGDARLAKSVK---NKVFSFDLVSN--------------------DPSVIACDMSNT  183 (294)
Q Consensus       129 ~~~~~~~l~~~--~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~~--------------------~~~~~~~d~~~l  183 (294)
                      ++.++.++...  .++.+|||||||+|.++..++   ..|+|+|+|+.                    ++.+...|+..+
T Consensus       130 v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l  209 (315)
T PLN02585        130 VEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL  209 (315)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc
Confidence            34566666542  256799999999999998887   37999999982                    234566666543


Q ss_pred             CCCCCCccEEEEcccccCCCH---HHHHHHHHHhcCcCcEEEEEeecC-----------CCC-CCC----CCCCHHHHHH
Q 022592          184 PLNSSSVDVAVFCLSLMGINF---PNYLQEAQRVLKPSGWLLIAEVKS-----------RFD-PNT----GGADPNKFSK  244 (294)
Q Consensus       184 p~~~~~fD~Vi~~~~l~~~~~---~~~l~el~r~LkpgG~l~i~e~~~-----------~~~-~~~----~~~~~~~~~~  244 (294)
                         +++||+|++..+++|...   ..+++.+.+ +.+||.++......           .+. +..    ..++.+++..
T Consensus       210 ---~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~liIs~~p~~~~~~~l~~~g~~~~g~~~~~r~y~~s~eel~~  285 (315)
T PLN02585        210 ---SGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRLIISFAPKTLYYDILKRIGELFPGPSKATRAYLHAEADVER  285 (315)
T ss_pred             ---CCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEEEEEeCCcchHHHHHHHHHhhcCCCCcCceeeeCCHHHHHH
Confidence               578999999999988532   345666654 45555544321110           111 110    1137899999


Q ss_pred             HHHHCCCeEEEEeccCCeEE
Q 022592          245 AVCDLGFAPVSKDFSNKMFI  264 (294)
Q Consensus       245 ~l~~~Gf~~~~~~~~~~~f~  264 (294)
                      +|+++||++.........||
T Consensus       286 lL~~AGf~v~~~~~~~~~~y  305 (315)
T PLN02585        286 ALKKAGWKVARREMTATQFY  305 (315)
T ss_pred             HHHHCCCEEEEEEEeeccee
Confidence            99999999988666555554

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=99.29  E-value=1.9e-11  Score=105.27  Aligned_cols=115  Identities=22%  Similarity=0.394  Sum_probs=86.8

Q ss_pred             EEEEEcCcccHHHHHhc-------cceEEEeccCC--------------CCcEEEccCCC----CCCCCCCccEEEEccc
Q 022592          144 VIADFGCGDARLAKSVK-------NKVFSFDLVSN--------------DPSVIACDMSN----TPLNSSSVDVAVFCLS  198 (294)
Q Consensus       144 ~VLDiGcG~G~~~~~l~-------~~v~gvD~s~~--------------~~~~~~~d~~~----lp~~~~~fD~Vi~~~~  198 (294)
                      +||+||||.|.....+.       -.|+++|.|+.              ++...+.|+..    -|...+++|+|++.++
T Consensus        74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFv  153 (264)
T KOG2361|consen   74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFV  153 (264)
T ss_pred             hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEEE
Confidence            79999999998766554       17899999982              33445556543    3566789999999999


Q ss_pred             ccCC---CHHHHHHHHHHhcCcCcEEEEEeecC----------------CCC-CCCC----CCCHHHHHHHHHHCCCeEE
Q 022592          199 LMGI---NFPNYLQEAQRVLKPSGWLLIAEVKS----------------RFD-PNTG----GADPNKFSKAVCDLGFAPV  254 (294)
Q Consensus       199 l~~~---~~~~~l~el~r~LkpgG~l~i~e~~~----------------~~~-~~~~----~~~~~~~~~~l~~~Gf~~~  254 (294)
                      |...   ....++..+.++|||||.|++-|...                .++ ..++    .++.+++..+++++||..+
T Consensus       154 LSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~agf~~~  233 (264)
T KOG2361|consen  154 LSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKGQCISENFYVRGDGTRAYFFTEEELDELFTKAGFEEV  233 (264)
T ss_pred             EeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccCCceeecceEEccCCceeeeccHHHHHHHHHhcccchh
Confidence            9875   35689999999999999999986432                111 1111    2689999999999999988


Q ss_pred             EEec
Q 022592          255 SKDF  258 (294)
Q Consensus       255 ~~~~  258 (294)
                      ..+.
T Consensus       234 ~~~~  237 (264)
T KOG2361|consen  234 QLEV  237 (264)
T ss_pred             cccc
Confidence            7543

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=99.28  E-value=2.1e-11  Score=109.21  Aligned_cols=85  Identities=18%  Similarity=0.251  Sum_probs=69.1

Q ss_pred             CCCEEEEEcCcccH----HHHHhc----------cceEEEeccCC-----------------------------------
Q 022592          141 PSLVIADFGCGDAR----LAKSVK----------NKVFSFDLVSN-----------------------------------  171 (294)
Q Consensus       141 ~~~~VLDiGcG~G~----~~~~l~----------~~v~gvD~s~~-----------------------------------  171 (294)
                      ++.+|||+|||+|.    ++..++          ..|+|+|+|+.                                   
T Consensus        99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~  178 (264)
T smart00138       99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR  178 (264)
T ss_pred             CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence            34699999999996    333332          26999999971                                   


Q ss_pred             -------CCcEEEccCCCCCCCCCCccEEEEcccccCCC---HHHHHHHHHHhcCcCcEEEEEe
Q 022592          172 -------DPSVIACDMSNTPLNSSSVDVAVFCLSLMGIN---FPNYLQEAQRVLKPSGWLLIAE  225 (294)
Q Consensus       172 -------~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~~---~~~~l~el~r~LkpgG~l~i~e  225 (294)
                             ++.|.+.|+.+.+++.++||+|+|..+|+|++   ...++++++++|+|||+|++..
T Consensus       179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~  242 (264)
T smart00138      179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH  242 (264)
T ss_pred             EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence                   35678889988887788999999999999974   3479999999999999999964

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PRK14968 putative methyltransferase; Provisional

Probab=99.27  E-value=2.2e-10  Score=96.78  Aligned_cols=116  Identities=22%  Similarity=0.352  Sum_probs=84.8

Q ss_pred             HHHHhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccCC---------------C--CcEEEccCCCCCCCCCCcc
Q 022592          132 IVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVSN---------------D--PSVIACDMSNTPLNSSSVD  191 (294)
Q Consensus       132 ~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~~---------------~--~~~~~~d~~~lp~~~~~fD  191 (294)
                      ++..+... ++.+|||+|||+|.++..++   ..++|+|+|+.               +  +.++.+|+.+ ++.+.+||
T Consensus        15 l~~~~~~~-~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~d   92 (188)
T PRK14968         15 LAENAVDK-KGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE-PFRGDKFD   92 (188)
T ss_pred             HHHhhhcc-CCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc-cccccCce
Confidence            44444333 56789999999999988886   48999999971               1  6677888765 33455899


Q ss_pred             EEEEcccccCC----------------------CHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHC
Q 022592          192 VAVFCLSLMGI----------------------NFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDL  249 (294)
Q Consensus       192 ~Vi~~~~l~~~----------------------~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~  249 (294)
                      +|+++..+.+.                      ....+++++.++|+|||.+++....  .      ...+.+..++.++
T Consensus        93 ~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~--~------~~~~~l~~~~~~~  164 (188)
T PRK14968         93 VILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSS--L------TGEDEVLEYLEKL  164 (188)
T ss_pred             EEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcc--c------CCHHHHHHHHHHC
Confidence            99987654321                      1356899999999999998876311  1      2347889999999


Q ss_pred             CCeEEEEe
Q 022592          250 GFAPVSKD  257 (294)
Q Consensus       250 Gf~~~~~~  257 (294)
                      ||.+....
T Consensus       165 g~~~~~~~  172 (188)
T PRK14968        165 GFEAEVVA  172 (188)
T ss_pred             CCeeeeee
Confidence            99887643

>PLN03075 nicotianamine synthase; Provisional

Probab=99.27  E-value=1.1e-10  Score=105.11  Aligned_cols=132  Identities=15%  Similarity=0.174  Sum_probs=88.6

Q ss_pred             HHHhhccCCCCEEEEEcCcccHHHHHhc-------cceEEEeccC-----------------CCCcEEEccCCCCCCCCC
Q 022592          133 VKWLKDHSPSLVIADFGCGDARLAKSVK-------NKVFSFDLVS-----------------NDPSVIACDMSNTPLNSS  188 (294)
Q Consensus       133 ~~~l~~~~~~~~VLDiGcG~G~~~~~l~-------~~v~gvD~s~-----------------~~~~~~~~d~~~lp~~~~  188 (294)
                      +..+... +..+|||||||.|.++..+.       ..++|+|+++                 +++.|..+|+.+++...+
T Consensus       116 L~~~~~~-~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~  194 (296)
T PLN03075        116 LSQHVNG-VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLK  194 (296)
T ss_pred             HHHhhcC-CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccC
Confidence            3333333 45699999999885533321       3699999997                 358899999987653356


Q ss_pred             CccEEEEcccccCC---CHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEEe--ccCCeE
Q 022592          189 SVDVAVFCLSLMGI---NFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSKD--FSNKMF  263 (294)
Q Consensus       189 ~fD~Vi~~~~l~~~---~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~--~~~~~f  263 (294)
                      .||+|++. +++++   ++.++++.+.+.|+|||.+++..-...-.-..+..++++..      ||++..+.  .....-
T Consensus       195 ~FDlVF~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~~G~r~~LYp~v~~~~~~------gf~~~~~~~P~~~v~N  267 (296)
T PLN03075        195 EYDVVFLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRSAHGARAFLYPVVDPCDLR------GFEVLSVFHPTDEVIN  267 (296)
T ss_pred             CcCEEEEe-cccccccccHHHHHHHHHHhcCCCcEEEEecccchHhhcCCCCChhhCC------CeEEEEEECCCCCcee
Confidence            79999999 77764   78899999999999999999964211110001112233322      99987733  233456


Q ss_pred             EEEEEEECC
Q 022592          264 IMFYFKKKE  272 (294)
Q Consensus       264 ~~i~~~k~~  272 (294)
                      +++++||..
T Consensus       268 svi~~r~~~  276 (296)
T PLN03075        268 SVIIARKPG  276 (296)
T ss_pred             eEEEEEeec
Confidence            777778864

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.26  E-value=3.4e-11  Score=107.12  Aligned_cols=119  Identities=21%  Similarity=0.280  Sum_probs=81.9

Q ss_pred             CCCEEEEEcCcccHHHHHhc----cceEEEeccCCCCcEEE-------c-cCCCCCCCCCCccEEEEcccccCCCHHHHH
Q 022592          141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVSNDPSVIA-------C-DMSNTPLNSSSVDVAVFCLSLMGINFPNYL  208 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~~~~~~~~-------~-d~~~lp~~~~~fD~Vi~~~~l~~~~~~~~l  208 (294)
                      ++.+|||+|||+|.++..++    ..|+|+|+++..+....       . +...++..+.+||+|+++...  .....++
T Consensus       119 ~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~~fD~Vvani~~--~~~~~l~  196 (250)
T PRK00517        119 PGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDLKADVIVANILA--NPLLELA  196 (250)
T ss_pred             CCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCCCcCEEEEcCcH--HHHHHHH
Confidence            56799999999999887765    25999999983221100       0 111122222379999986432  2345788


Q ss_pred             HHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEEeccCCeEEEEEEEE
Q 022592          209 QEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSKDFSNKMFIMFYFKK  270 (294)
Q Consensus       209 ~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~f~~i~~~k  270 (294)
                      .++.++|+|||.++++.+..        ...+.+...+++.||.+....... .+..+.++|
T Consensus       197 ~~~~~~LkpgG~lilsgi~~--------~~~~~v~~~l~~~Gf~~~~~~~~~-~W~~~~~~~  249 (250)
T PRK00517        197 PDLARLLKPGGRLILSGILE--------EQADEVLEAYEEAGFTLDEVLERG-EWVALVGKK  249 (250)
T ss_pred             HHHHHhcCCCcEEEEEECcH--------hhHHHHHHHHHHCCCEEEEEEEeC-CEEEEEEEe
Confidence            99999999999999986532        134788899999999998866544 455555554

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.26  E-value=1.4e-11  Score=105.33  Aligned_cols=107  Identities=16%  Similarity=0.256  Sum_probs=79.8

Q ss_pred             CCCEEEEEcCcccHHHHHhc-----cceEEEeccC---------------CCCcEEEccCCCCC---CCCCCccEEEEcc
Q 022592          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSNTP---LNSSSVDVAVFCL  197 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~---------------~~~~~~~~d~~~lp---~~~~~fD~Vi~~~  197 (294)
                      ...+|||||||+|.++..++     ..|+|+|++.               .++.++.+|+..++   ++++++|.|++.+
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~   95 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF   95 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence            34589999999999998887     3799999987               36788999987643   4567899999887


Q ss_pred             cccCCC---------HHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCC-CeEEE
Q 022592          198 SLMGIN---------FPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLG-FAPVS  255 (294)
Q Consensus       198 ~l~~~~---------~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~G-f~~~~  255 (294)
                      ...|..         ...++.++.++|+|||.|++..-...        ..+.+.+.+...| |+...
T Consensus        96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~--------~~~~~~~~~~~~~~f~~~~  155 (194)
T TIGR00091        96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEP--------LFEDMLKVLSENDLFENTS  155 (194)
T ss_pred             CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHH--------HHHHHHHHHHhCCCeEecc
Confidence            655421         25799999999999999988642221        1245566676666 76654

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.26  E-value=5.6e-11  Score=106.88  Aligned_cols=118  Identities=22%  Similarity=0.320  Sum_probs=86.0

Q ss_pred             CCCEEEEEcCcccHHHHHhc----cceEEEeccC------------CCCc----EEEccCCCCCCCCCCccEEEEccccc
Q 022592          141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVS------------NDPS----VIACDMSNTPLNSSSVDVAVFCLSLM  200 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~------------~~~~----~~~~d~~~lp~~~~~fD~Vi~~~~l~  200 (294)
                      ++.+|||+|||+|.++...+    ..|+|+|+.+            +.+.    ....+....+ ..+.||+|+++- |-
T Consensus       162 ~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~-~~~~~DvIVANI-LA  239 (300)
T COG2264         162 KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVP-ENGPFDVIVANI-LA  239 (300)
T ss_pred             CCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhc-ccCcccEEEehh-hH
Confidence            67799999999999998876    4799999988            2333    1122222222 235899999873 21


Q ss_pred             CCCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEEeccCCeEEEEEEEE
Q 022592          201 GINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSKDFSNKMFIMFYFKK  270 (294)
Q Consensus       201 ~~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~f~~i~~~k  270 (294)
                       --...+...+.+.|+|||+++++.+....        .+.+.+.++++||.++..... .-+..+.++|
T Consensus       240 -~vl~~La~~~~~~lkpgg~lIlSGIl~~q--------~~~V~~a~~~~gf~v~~~~~~-~eW~~i~~kr  299 (300)
T COG2264         240 -EVLVELAPDIKRLLKPGGRLILSGILEDQ--------AESVAEAYEQAGFEVVEVLER-EEWVAIVGKR  299 (300)
T ss_pred             -HHHHHHHHHHHHHcCCCceEEEEeehHhH--------HHHHHHHHHhCCCeEeEEEec-CCEEEEEEEc
Confidence             12347788999999999999999765433        377889999999999987665 5677777765

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.25  E-value=8.1e-11  Score=99.96  Aligned_cols=111  Identities=14%  Similarity=0.158  Sum_probs=81.9

Q ss_pred             HHHHhhccCCCCEEEEEcCcccHHHHHhc-----cceEEEeccC---------------CCCcEEEccCCCCCCCCCCcc
Q 022592          132 IVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVD  191 (294)
Q Consensus       132 ~~~~l~~~~~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~---------------~~~~~~~~d~~~lp~~~~~fD  191 (294)
                      ++..+... ++.+|||||||+|.++..++     .+|+++|+++               .++.++.+|+. .++ .++||
T Consensus        23 ~~~~l~~~-~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~-~~~-~~~~D   99 (187)
T PRK08287         23 ALSKLELH-RAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAP-IEL-PGKAD   99 (187)
T ss_pred             HHHhcCCC-CCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCch-hhc-CcCCC
Confidence            33444433 66799999999999988775     3799999997               24566777764 233 35799


Q ss_pred             EEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEE
Q 022592          192 VAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVS  255 (294)
Q Consensus       192 ~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~  255 (294)
                      +|++.....  ....++..+.++|+|||.+++..+.        ..+..++..++++.||..+.
T Consensus       100 ~v~~~~~~~--~~~~~l~~~~~~Lk~gG~lv~~~~~--------~~~~~~~~~~l~~~g~~~~~  153 (187)
T PRK08287        100 AIFIGGSGG--NLTAIIDWSLAHLHPGGRLVLTFIL--------LENLHSALAHLEKCGVSELD  153 (187)
T ss_pred             EEEECCCcc--CHHHHHHHHHHhcCCCeEEEEEEec--------HhhHHHHHHHHHHCCCCcce
Confidence            999876543  4567899999999999999886432        12447888999999997655

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.22  E-value=1.6e-10  Score=108.09  Aligned_cols=129  Identities=16%  Similarity=0.198  Sum_probs=91.5

Q ss_pred             HHHHHHhhccCCCCEEEEEcCcccHHHHHhc-----cceEEEeccCC------------------CCcEEEccCCCCCCC
Q 022592          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVSN------------------DPSVIACDMSNTPLN  186 (294)
Q Consensus       130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~~------------------~~~~~~~d~~~lp~~  186 (294)
                      +.+++.+... ...+|||+|||+|.++..++     .+|+++|+|+.                  +++++..|+... ++
T Consensus       218 rllL~~lp~~-~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-~~  295 (378)
T PRK15001        218 RFFMQHLPEN-LEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-VE  295 (378)
T ss_pred             HHHHHhCCcc-cCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc-CC
Confidence            4466776544 34599999999999998876     37999999961                  346666776442 23


Q ss_pred             CCCccEEEEcccccCC---C---HHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEEeccC
Q 022592          187 SSSVDVAVFCLSLMGI---N---FPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSKDFSN  260 (294)
Q Consensus       187 ~~~fD~Vi~~~~l~~~---~---~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~  260 (294)
                      .++||+|+++..+|..   .   ...++..+.++|+|||.|+++.  ..+         ..+...|++ .|..++....+
T Consensus       296 ~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~--nr~---------l~y~~~L~~-~fg~~~~va~~  363 (378)
T PRK15001        296 PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA--NRH---------LDYFHKLKK-IFGNCTTIATN  363 (378)
T ss_pred             CCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE--ecC---------cCHHHHHHH-HcCCceEEccC
Confidence            4689999998887742   1   3478999999999999999973  222         123344444 35556666778


Q ss_pred             CeEEEEEEEECC
Q 022592          261 KMFIMFYFKKKE  272 (294)
Q Consensus       261 ~~f~~i~~~k~~  272 (294)
                      ..|.++.++|..
T Consensus       364 ~kf~vl~a~k~~  375 (378)
T PRK15001        364 NKFVVLKAVKLG  375 (378)
T ss_pred             CCEEEEEEEeCC
Confidence            889999988843

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=99.22  E-value=3.3e-11  Score=103.88  Aligned_cols=81  Identities=21%  Similarity=0.317  Sum_probs=62.5

Q ss_pred             EEEEEcCcccHHHHHhc---cceEEEeccCC---------CCcE-------EEccCCCCCCCCCCccEEEEcccccCCCH
Q 022592          144 VIADFGCGDARLAKSVK---NKVFSFDLVSN---------DPSV-------IACDMSNTPLNSSSVDVAVFCLSLMGINF  204 (294)
Q Consensus       144 ~VLDiGcG~G~~~~~l~---~~v~gvD~s~~---------~~~~-------~~~d~~~lp~~~~~fD~Vi~~~~l~~~~~  204 (294)
                      .++|+|||+|..++.++   .+|+|+|+|+.         ++.+       ...++..+--.++++|+|++...+||+|.
T Consensus        36 ~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWFdl  115 (261)
T KOG3010|consen   36 LAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHWFDL  115 (261)
T ss_pred             eEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHhhch
Confidence            79999999997777776   58999999982         2222       22223333333899999999999999999


Q ss_pred             HHHHHHHHHhcCcCcEEEEE
Q 022592          205 PNYLQEAQRVLKPSGWLLIA  224 (294)
Q Consensus       205 ~~~l~el~r~LkpgG~l~i~  224 (294)
                      ..+.++++|+||+.|-++.+
T Consensus       116 e~fy~~~~rvLRk~Gg~iav  135 (261)
T KOG3010|consen  116 ERFYKEAYRVLRKDGGLIAV  135 (261)
T ss_pred             HHHHHHHHHHcCCCCCEEEE
Confidence            99999999999997744444

>TIGR03438 probable methyltransferase

Probab=99.21  E-value=3.2e-10  Score=103.56  Aligned_cols=83  Identities=17%  Similarity=0.273  Sum_probs=59.9

Q ss_pred             CCCEEEEEcCcccHHHHHhc------cceEEEeccCC--------------C--CcEEEccCCC-CCCCCCC----ccEE
Q 022592          141 PSLVIADFGCGDARLAKSVK------NKVFSFDLVSN--------------D--PSVIACDMSN-TPLNSSS----VDVA  193 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~~--------------~--~~~~~~d~~~-lp~~~~~----fD~V  193 (294)
                      ++..|||+|||+|..+..++      ..|+++|+|+.              .  +.++++|+.+ ++++...    ..++
T Consensus        63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~  142 (301)
T TIGR03438        63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGF  142 (301)
T ss_pred             CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEE
Confidence            45689999999999877664      36999999982              2  3457889876 4443332    2344


Q ss_pred             EEcccccCCC---HHHHHHHHHHhcCcCcEEEE
Q 022592          194 VFCLSLMGIN---FPNYLQEAQRVLKPSGWLLI  223 (294)
Q Consensus       194 i~~~~l~~~~---~~~~l~el~r~LkpgG~l~i  223 (294)
                      ++..++++.+   ...++++++++|+|||.|++
T Consensus       143 ~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~li  175 (301)
T TIGR03438       143 FPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLI  175 (301)
T ss_pred             EecccccCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence            4445666654   45789999999999999996

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.21  E-value=1.1e-10  Score=91.50  Aligned_cols=90  Identities=17%  Similarity=0.242  Sum_probs=67.5

Q ss_pred             HHHHhhccCCCCEEEEEcCcccHHHHHhc-----cceEEEeccC---------------CCCcEEEccCCC-CCCCCCCc
Q 022592          132 IVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSN-TPLNSSSV  190 (294)
Q Consensus       132 ~~~~l~~~~~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~---------------~~~~~~~~d~~~-lp~~~~~f  190 (294)
                      ++..+... ++.+|||+|||+|.++..++     ..|+++|+++               .++.++.+|+.. ++....+|
T Consensus        11 ~~~~~~~~-~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (124)
T TIGR02469        11 TLSKLRLR-PGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEP   89 (124)
T ss_pred             HHHHcCCC-CCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCC
Confidence            44444332 45699999999999988776     2799999987               245677777654 33334689


Q ss_pred             cEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEE
Q 022592          191 DVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIA  224 (294)
Q Consensus       191 D~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~  224 (294)
                      |+|++.....  ....+++++.++|+|||.+++.
T Consensus        90 D~v~~~~~~~--~~~~~l~~~~~~Lk~gG~li~~  121 (124)
T TIGR02469        90 DRVFIGGSGG--LLQEILEAIWRRLRPGGRIVLN  121 (124)
T ss_pred             CEEEECCcch--hHHHHHHHHHHHcCCCCEEEEE
Confidence            9999876543  3468999999999999999985

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=99.21  E-value=4.1e-11  Score=99.41  Aligned_cols=85  Identities=18%  Similarity=0.242  Sum_probs=70.8

Q ss_pred             CCcEEEccCCCCCCCCCCccEEEEcccccC-CCHHHHHHHHHHhcCcCcEEEEEeecCCCC---------------C---
Q 022592          172 DPSVIACDMSNTPLNSSSVDVAVFCLSLMG-INFPNYLQEAQRVLKPSGWLLIAEVKSRFD---------------P---  232 (294)
Q Consensus       172 ~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~-~~~~~~l~el~r~LkpgG~l~i~e~~~~~~---------------~---  232 (294)
                      ++.++++|+.++|+++++||+|++.+++++ .++..++++++|+|||||.+++.++.....               .   
T Consensus        27 ~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  106 (160)
T PLN02232         27 CIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSILDFNKSNQSVTTFMQGWMIDNVVVPVA  106 (160)
T ss_pred             ceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEEECCCCChHHHHHHHHHHccchHhhhh
Confidence            578999999999999999999999999998 589999999999999999999998653210               0   


Q ss_pred             ----C-----------CCCCCHHHHHHHHHHCCCeEEEE
Q 022592          233 ----N-----------TGGADPNKFSKAVCDLGFAPVSK  256 (294)
Q Consensus       233 ----~-----------~~~~~~~~~~~~l~~~Gf~~~~~  256 (294)
                          .           ....+.+++.++|+++||+.+..
T Consensus       107 ~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~  145 (160)
T PLN02232        107 TVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACH  145 (160)
T ss_pred             HHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceE
Confidence                0           01148889999999999987763

>TIGR00438 rrmJ cell division protein FtsJ

Probab=99.20  E-value=3.8e-10  Score=95.93  Aligned_cols=114  Identities=20%  Similarity=0.295  Sum_probs=79.2

Q ss_pred             HHHhhccCCCCEEEEEcCcccHHHHHhc------cceEEEeccC----CCCcEEEccCCCCC--------CCCCCccEEE
Q 022592          133 VKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----NDPSVIACDMSNTP--------LNSSSVDVAV  194 (294)
Q Consensus       133 ~~~l~~~~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~----~~~~~~~~d~~~lp--------~~~~~fD~Vi  194 (294)
                      .+.+....++.+|||+|||+|.++..++      .+++++|+++    .++.++.+|+.+.+        ++.++||+|+
T Consensus        24 ~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~  103 (188)
T TIGR00438        24 NQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMKPIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVM  103 (188)
T ss_pred             HHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccccCCCceEEEeeCCChhHHHHHHHHhCCCCccEEE
Confidence            3333333477899999999999887664      2599999998    36778888887643        4566899999


Q ss_pred             Eccccc----C-CC-------HHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEE
Q 022592          195 FCLSLM----G-IN-------FPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVS  255 (294)
Q Consensus       195 ~~~~l~----~-~~-------~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~  255 (294)
                      +..+.+    + .+       ...++..+.++|+|||.+++..+..        ....++...++.. |..+.
T Consensus       104 ~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~--------~~~~~~l~~l~~~-~~~~~  167 (188)
T TIGR00438       104 SDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQG--------EEIDEYLNELRKL-FEKVK  167 (188)
T ss_pred             cCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccC--------ccHHHHHHHHHhh-hceEE
Confidence            865422    1 11       3678999999999999999853221        2335666666653 64443

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.20  E-value=8.7e-11  Score=101.37  Aligned_cols=89  Identities=20%  Similarity=0.296  Sum_probs=68.4

Q ss_pred             HHHHHHhhccCCCCEEEEEcCcccHHHHHhc------cceEEEeccC----------------CCCcEEEccCCCCCCCC
Q 022592          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----------------NDPSVIACDMSNTPLNS  187 (294)
Q Consensus       130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~----------------~~~~~~~~d~~~lp~~~  187 (294)
                      ..+++.+... ++.+|||||||+|..+..++      .+|+++|+++                .++.++.+|+.......
T Consensus        62 ~~~~~~l~~~-~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~  140 (205)
T PRK13944         62 AMMCELIEPR-PGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKH  140 (205)
T ss_pred             HHHHHhcCCC-CCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccC
Confidence            4455555433 66799999999999887664      3799999997                13678888987754456


Q ss_pred             CCccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEE
Q 022592          188 SSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIA  224 (294)
Q Consensus       188 ~~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~  224 (294)
                      .+||+|++..++++..     .++.++|+|||+|++.
T Consensus       141 ~~fD~Ii~~~~~~~~~-----~~l~~~L~~gG~lvi~  172 (205)
T PRK13944        141 APFDAIIVTAAASTIP-----SALVRQLKDGGVLVIP  172 (205)
T ss_pred             CCccEEEEccCcchhh-----HHHHHhcCcCcEEEEE
Confidence            7899999998876542     4788999999999885

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.18  E-value=1.9e-10  Score=104.14  Aligned_cols=125  Identities=21%  Similarity=0.328  Sum_probs=84.7

Q ss_pred             HHHHhhcc-CCCCEEEEEcCcccHHHHHhc----cceEEEeccCC------------C--CcEEEccCCCCCCCCCCccE
Q 022592          132 IVKWLKDH-SPSLVIADFGCGDARLAKSVK----NKVFSFDLVSN------------D--PSVIACDMSNTPLNSSSVDV  192 (294)
Q Consensus       132 ~~~~l~~~-~~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~~------------~--~~~~~~d~~~lp~~~~~fD~  192 (294)
                      .++.|... .++.+|||+|||+|.++...+    ..|+|+|+.+.            +  ..+......+  ...+.||+
T Consensus       151 cl~~l~~~~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~~~--~~~~~~dl  228 (295)
T PF06325_consen  151 CLELLEKYVKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSLSED--LVEGKFDL  228 (295)
T ss_dssp             HHHHHHHHSSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCTSC--TCCS-EEE
T ss_pred             HHHHHHHhccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEecc--cccccCCE
Confidence            34444432 356799999999999988775    48999999981            1  1333322222  23488999


Q ss_pred             EEEcccccCCCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEEeccCCeEEEEEEEE
Q 022592          193 AVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSKDFSNKMFIMFYFKK  270 (294)
Q Consensus       193 Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~f~~i~~~k  270 (294)
                      |+++-..  .-....+..+.++|+|||.|+++.+...-        .+.+.+.+++ ||.+...... ..|..+.++|
T Consensus       229 vvANI~~--~vL~~l~~~~~~~l~~~G~lIlSGIl~~~--------~~~v~~a~~~-g~~~~~~~~~-~~W~~l~~~K  294 (295)
T PF06325_consen  229 VVANILA--DVLLELAPDIASLLKPGGYLILSGILEEQ--------EDEVIEAYKQ-GFELVEEREE-GEWVALVFKK  294 (295)
T ss_dssp             EEEES-H--HHHHHHHHHCHHHEEEEEEEEEEEEEGGG--------HHHHHHHHHT-TEEEEEEEEE-TTEEEEEEEE
T ss_pred             EEECCCH--HHHHHHHHHHHHhhCCCCEEEEccccHHH--------HHHHHHHHHC-CCEEEEEEEE-CCEEEEEEEe
Confidence            9987432  12346677788999999999999765433        3788888977 9999887654 4566666665

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PRK14967 putative methyltransferase; Provisional

Probab=99.18  E-value=5.2e-10  Score=97.74  Aligned_cols=106  Identities=19%  Similarity=0.254  Sum_probs=75.8

Q ss_pred             CCCEEEEEcCcccHHHHHhc----cceEEEeccCC--------------CCcEEEccCCCCCCCCCCccEEEEcccccCC
Q 022592          141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVSN--------------DPSVIACDMSNTPLNSSSVDVAVFCLSLMGI  202 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~~--------------~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~  202 (294)
                      ++.+|||+|||+|.++..++    .+++++|+++.              ++.++.+|+... +++++||+|+++..+...
T Consensus        36 ~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~-~~~~~fD~Vi~npPy~~~  114 (223)
T PRK14967         36 PGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARA-VEFRPFDVVVSNPPYVPA  114 (223)
T ss_pred             CCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhh-ccCCCeeEEEECCCCCCC
Confidence            56799999999999988775    27999999971              345677787653 456789999997543321


Q ss_pred             -C---------------------HHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEE
Q 022592          203 -N---------------------FPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVS  255 (294)
Q Consensus       203 -~---------------------~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~  255 (294)
                       .                     ...++.++.++|+|||.++++....        ....++...++..||.+..
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~--------~~~~~~~~~l~~~g~~~~~  181 (223)
T PRK14967        115 PPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSEL--------SGVERTLTRLSEAGLDAEV  181 (223)
T ss_pred             CcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecc--------cCHHHHHHHHHHCCCCeEE
Confidence             1                     3467888999999999999853211        1335666777777776544

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=99.18  E-value=7.2e-10  Score=96.60  Aligned_cols=139  Identities=15%  Similarity=0.086  Sum_probs=98.5

Q ss_pred             hHHhhhccCCCcHH-HHHHHHhhcc--CCCCEEEEEcCcccHHHHHhcc---ceEEEeccC-------------------
Q 022592          116 GYQEQMSHWPELPV-NIIVKWLKDH--SPSLVIADFGCGDARLAKSVKN---KVFSFDLVS-------------------  170 (294)
Q Consensus       116 ~~~~~~~~~~~~~~-~~~~~~l~~~--~~~~~VLDiGcG~G~~~~~l~~---~v~gvD~s~-------------------  170 (294)
                      .|......|..... ..+.+++...  .++.+||+.|||.|..+.+|+.   .|+|+|+|+                   
T Consensus        15 rw~~~~~~f~~~~pnp~L~~~~~~l~~~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~   94 (226)
T PRK13256         15 RWQNDDVGFCQESPNEFLVKHFSKLNINDSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHG   94 (226)
T ss_pred             HHhcCCCCCccCCCCHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcceecc
Confidence            34444566744322 3344555433  2457999999999999999983   899999997                   


Q ss_pred             --------CCCcEEEccCCCCCCC---CCCccEEEEcccccCC---CHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCC
Q 022592          171 --------NDPSVIACDMSNTPLN---SSSVDVAVFCLSLMGI---NFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGG  236 (294)
Q Consensus       171 --------~~~~~~~~d~~~lp~~---~~~fD~Vi~~~~l~~~---~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~  236 (294)
                              .++.+.++|+.+++..   .+.||+|+-..+|.+.   .+.+.++.+.++|+|||.++++.+.-......+.
T Consensus        95 ~~~~~~~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~~~~~~GPP  174 (226)
T PRK13256         95 NDYKLYKGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEHDKKSQTPP  174 (226)
T ss_pred             cccceeccCceEEEEccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEecCCCCCCCC
Confidence                    1567889999988642   2679999999999885   3568999999999999999998764322222222


Q ss_pred             --CCHHHHHHHHHHCCCeEEE
Q 022592          237 --ADPNKFSKAVCDLGFAPVS  255 (294)
Q Consensus       237 --~~~~~~~~~l~~~Gf~~~~  255 (294)
                        .+.+++..++.. +|.+..
T Consensus       175 f~v~~~e~~~lf~~-~~~i~~  194 (226)
T PRK13256        175 YSVTQAELIKNFSA-KIKFEL  194 (226)
T ss_pred             CcCCHHHHHHhccC-CceEEE
Confidence              467888888764 455544

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.17  E-value=1.9e-10  Score=106.34  Aligned_cols=107  Identities=23%  Similarity=0.200  Sum_probs=83.1

Q ss_pred             cCCCCEEEEEcCcccHHHHHhc---cceEEEeccC---------------CCCcEEEccCCCCCCCCCCccEEEEccccc
Q 022592          139 HSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLM  200 (294)
Q Consensus       139 ~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~---------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~  200 (294)
                      ..++..|||+|||+|.++..++   ..++|+|+++               .++.+..+|+.++|+++++||+|++...+.
T Consensus       180 ~~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPPyg  259 (329)
T TIGR01177       180 VTEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPPYG  259 (329)
T ss_pred             CCCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCCCc
Confidence            3467799999999999877664   5899999987               235788999999998888999999975432


Q ss_pred             C------C---C-HHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEEe
Q 022592          201 G------I---N-FPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSKD  257 (294)
Q Consensus       201 ~------~---~-~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~  257 (294)
                      .      .   + ...++.++.++|+|||++++....           ...+..+++++|| ++...
T Consensus       260 ~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~-----------~~~~~~~~~~~g~-i~~~~  314 (329)
T TIGR01177       260 RSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPT-----------RIDLESLAEDAFR-VVKRF  314 (329)
T ss_pred             CcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcC-----------CCCHHHHHhhcCc-chhee
Confidence            1      1   1 468999999999999999886422           1355677999999 76633

This family is found exclusively in the Archaea.

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=99.17  E-value=1.5e-10  Score=100.68  Aligned_cols=141  Identities=18%  Similarity=0.215  Sum_probs=93.4

Q ss_pred             hHHhhhccCCCcH-HHHHHHHhhc--cCCCCEEEEEcCcccHHHHHhcc---ceEEEeccC-------------------
Q 022592          116 GYQEQMSHWPELP-VNIIVKWLKD--HSPSLVIADFGCGDARLAKSVKN---KVFSFDLVS-------------------  170 (294)
Q Consensus       116 ~~~~~~~~~~~~~-~~~~~~~l~~--~~~~~~VLDiGcG~G~~~~~l~~---~v~gvD~s~-------------------  170 (294)
                      .|......|.... -..+.+++..  ..++.+||..|||.|..+..|+.   .|+|+|+|+                   
T Consensus         9 ~w~~~~~~w~~~~~~p~L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~   88 (218)
T PF05724_consen    9 RWQEGQTPWDQGEPNPALVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLEPTVTSV   88 (218)
T ss_dssp             HHHTT--TT--TTSTHHHHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTEEECTTC
T ss_pred             HHhcCCCCCCCCCCCHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccCCCcccc
Confidence            3444456676532 2233444443  23566999999999999999983   899999997                   


Q ss_pred             --------CCCcEEEccCCCCCCCC-CCccEEEEcccccCC---CHHHHHHHHHHhcCcCcEEEEEeecCCCCCC-CCC-
Q 022592          171 --------NDPSVIACDMSNTPLNS-SSVDVAVFCLSLMGI---NFPNYLQEAQRVLKPSGWLLIAEVKSRFDPN-TGG-  236 (294)
Q Consensus       171 --------~~~~~~~~d~~~lp~~~-~~fD~Vi~~~~l~~~---~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~-~~~-  236 (294)
                              .++.+.++|+..++... ++||+|+=...|...   .+.+..+.+.++|+|||.++++.+.-..... .+. 
T Consensus        89 ~~~~~~~~~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf  168 (218)
T PF05724_consen   89 GGFKRYQAGRITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPF  168 (218)
T ss_dssp             TTEEEETTSSEEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS-
T ss_pred             cceeeecCCceEEEEcccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCC
Confidence                    13567899999877543 579999988888764   5679999999999999995544333221111 122 


Q ss_pred             -CCHHHHHHHHHHCCCeEEEEe
Q 022592          237 -ADPNKFSKAVCDLGFAPVSKD  257 (294)
Q Consensus       237 -~~~~~~~~~l~~~Gf~~~~~~  257 (294)
                       .+.+++.+++. .+|++....
T Consensus       169 ~v~~~ev~~l~~-~~f~i~~l~  189 (218)
T PF05724_consen  169 SVTEEEVRELFG-PGFEIEELE  189 (218)
T ss_dssp             ---HHHHHHHHT-TTEEEEEEE
T ss_pred             CCCHHHHHHHhc-CCcEEEEEe
Confidence             57788999888 789887743

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.17  E-value=1.8e-10  Score=96.51  Aligned_cols=94  Identities=22%  Similarity=0.444  Sum_probs=71.8

Q ss_pred             HHHHHHhhccCCCCEEEEEcCcccHHHHHhcc-----ceEEEeccC---------------CCCcEEEccCCCCCCCCCC
Q 022592          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVKN-----KVFSFDLVS---------------NDPSVIACDMSNTPLNSSS  189 (294)
Q Consensus       130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~~-----~v~gvD~s~---------------~~~~~~~~d~~~lp~~~~~  189 (294)
                      ..+++.+... +..+|||+|||+|.++..++.     .|+++|+++               .++.++.+|+... +++++
T Consensus        21 ~lL~~~l~~~-~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~-~~~~~   98 (170)
T PF05175_consen   21 RLLLDNLPKH-KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEA-LPDGK   98 (170)
T ss_dssp             HHHHHHHHHH-TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTT-CCTTC
T ss_pred             HHHHHHHhhc-cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCcccccccccccccc-ccccc
Confidence            4466667665 567999999999999988872     699999998               2367888888653 23688


Q ss_pred             ccEEEEcccccCC-C-----HHHHHHHHHHhcCcCcEEEEEe
Q 022592          190 VDVAVFCLSLMGI-N-----FPNYLQEAQRVLKPSGWLLIAE  225 (294)
Q Consensus       190 fD~Vi~~~~l~~~-~-----~~~~l~el~r~LkpgG~l~i~e  225 (294)
                      ||+|+++..++.. +     ...++.++.++|+|||.|+++.
T Consensus        99 fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~  140 (170)
T PF05175_consen   99 FDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVI  140 (170)
T ss_dssp             EEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEe
Confidence            9999999887753 2     4688999999999999998753

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=99.17  E-value=5.6e-10  Score=92.42  Aligned_cols=104  Identities=19%  Similarity=0.328  Sum_probs=84.7

Q ss_pred             CEEEEEcCcccHHHHHhc-----cceEEEeccC----------------CCCcEEEccCCCCCCCCCCccEEEEcccccC
Q 022592          143 LVIADFGCGDARLAKSVK-----NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMG  201 (294)
Q Consensus       143 ~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~----------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~  201 (294)
                      .+|||+|||+|.++..|+     ...+|+|.|+                +.+.|.+.|+....+..++||+|.--.++-.
T Consensus        69 ~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DA  148 (227)
T KOG1271|consen   69 DRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDA  148 (227)
T ss_pred             cceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceee
Confidence            389999999999999998     3589999998                2388999999987777888999987666543


Q ss_pred             C----C-----HHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEE
Q 022592          202 I----N-----FPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVS  255 (294)
Q Consensus       202 ~----~-----~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~  255 (294)
                      .    +     +...+..+.++|+|||+++|...+         ++.+++.+.++..||....
T Consensus       149 isLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN---------~T~dELv~~f~~~~f~~~~  202 (227)
T KOG1271|consen  149 ISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCN---------FTKDELVEEFENFNFEYLS  202 (227)
T ss_pred             eecCCCCcccceeeehhhHhhccCCCcEEEEEecC---------ccHHHHHHHHhcCCeEEEE
Confidence            1    1     235678889999999999997644         4679999999999998766

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.16  E-value=3.7e-10  Score=99.86  Aligned_cols=105  Identities=24%  Similarity=0.407  Sum_probs=80.0

Q ss_pred             CCEEEEEcCcccHHHHHhc-----cceEEEeccC---------------CCCcEEEccCCCCCCCCCCccEEEEcccccC
Q 022592          142 SLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMG  201 (294)
Q Consensus       142 ~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~---------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~  201 (294)
                      +.+|||+|||+|.++..++     ..++|+|+++               .++.++.+|+.. ++++++||+|+++..+..
T Consensus        88 ~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~  166 (251)
T TIGR03534        88 PLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFE-PLPGGKFDLIVSNPPYIP  166 (251)
T ss_pred             CCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhc-cCcCCceeEEEECCCCCc
Confidence            4589999999999988876     2789999987               247788889876 456788999998654331


Q ss_pred             C---------------------------CHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEE
Q 022592          202 I---------------------------NFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPV  254 (294)
Q Consensus       202 ~---------------------------~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~  254 (294)
                      .                           ....++..+.++|+|||.+++.. .        ....+.+.++++++||..+
T Consensus       167 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~-~--------~~~~~~~~~~l~~~gf~~v  237 (251)
T TIGR03534       167 EADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI-G--------YDQGEAVRALFEAAGFADV  237 (251)
T ss_pred             hhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE-C--------ccHHHHHHHHHHhCCCCce
Confidence            0                           02367889999999999998842 1        1245788999999999876


Q ss_pred             EE
Q 022592          255 SK  256 (294)
Q Consensus       255 ~~  256 (294)
                      ..
T Consensus       238 ~~  239 (251)
T TIGR03534       238 ET  239 (251)
T ss_pred             EE
Confidence            64

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.15  E-value=5.9e-11  Score=100.72  Aligned_cols=127  Identities=15%  Similarity=0.195  Sum_probs=98.1

Q ss_pred             cHHHHHHHHhhccCCCCEEEEEcCcccHHHHHhc-----cceEEEeccC----------CCCcEEEccCCCCCCCCCCcc
Q 022592          127 LPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS----------NDPSVIACDMSNTPLNSSSVD  191 (294)
Q Consensus       127 ~~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~----------~~~~~~~~d~~~lp~~~~~fD  191 (294)
                      .+...++..+... ....|.|+|||+|..+..|+     +.++|+|-|+          .++.|..+|+.+.. +....|
T Consensus        17 RPa~dLla~Vp~~-~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~-p~~~~d   94 (257)
T COG4106          17 RPARDLLARVPLE-RPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWK-PEQPTD   94 (257)
T ss_pred             CcHHHHHhhCCcc-ccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcC-CCCccc
Confidence            3456677777766 44589999999999999887     4899999887          57889999998865 457799


Q ss_pred             EEEEcccccC-CCHHHHHHHHHHhcCcCcEEEEEeecCC----------------CCC--------CCCCCCHHHHHHHH
Q 022592          192 VAVFCLSLMG-INFPNYLQEAQRVLKPSGWLLIAEVKSR----------------FDP--------NTGGADPNKFSKAV  246 (294)
Q Consensus       192 ~Vi~~~~l~~-~~~~~~l~el~r~LkpgG~l~i~e~~~~----------------~~~--------~~~~~~~~~~~~~l  246 (294)
                      +++++.+|+| .+-...+..+...|.|||+|.+--..+.                |..        ...-.++..+.++|
T Consensus        95 llfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a~Yy~lL  174 (257)
T COG4106          95 LLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRGLTRAPLPSPAAYYELL  174 (257)
T ss_pred             hhhhhhhhhhccccHHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhhCccccccCCCCCHHHHHHHh
Confidence            9999999999 4888999999999999999998521110                110        01115778888888


Q ss_pred             HHCCCeEEE
Q 022592          247 CDLGFAPVS  255 (294)
Q Consensus       247 ~~~Gf~~~~  255 (294)
                      ...+.++..
T Consensus       175 a~~~~rvDi  183 (257)
T COG4106         175 APLACRVDI  183 (257)
T ss_pred             Ccccceeee
Confidence            888776654

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.14  E-value=2.4e-10  Score=99.19  Aligned_cols=89  Identities=19%  Similarity=0.219  Sum_probs=69.3

Q ss_pred             HHHHHHhhccCCCCEEEEEcCcccHHHHHhc------cceEEEeccC---------------CCCcEEEccCCCCCCCCC
Q 022592          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS---------------NDPSVIACDMSNTPLNSS  188 (294)
Q Consensus       130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~---------------~~~~~~~~d~~~lp~~~~  188 (294)
                      ..+++.+... ++.+|||||||+|.++..++      .+|+++|+++               .++.++.+|....+.+.+
T Consensus        66 ~~~~~~l~~~-~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~  144 (212)
T PRK13942         66 AIMCELLDLK-EGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENA  144 (212)
T ss_pred             HHHHHHcCCC-CcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCC
Confidence            4455555443 67899999999999887665      3899999996               367889999877665678


Q ss_pred             CccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEE
Q 022592          189 SVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIA  224 (294)
Q Consensus       189 ~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~  224 (294)
                      +||+|++..++.+.     ...+.+.|+|||.|++.
T Consensus       145 ~fD~I~~~~~~~~~-----~~~l~~~LkpgG~lvi~  175 (212)
T PRK13942        145 PYDRIYVTAAGPDI-----PKPLIEQLKDGGIMVIP  175 (212)
T ss_pred             CcCEEEECCCcccc-----hHHHHHhhCCCcEEEEE
Confidence            89999988765432     34677899999999885

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.14  E-value=8.4e-10  Score=96.87  Aligned_cols=132  Identities=16%  Similarity=0.229  Sum_probs=99.0

Q ss_pred             HHHHhhccCCCCEEEEEcCcccHHHHHhc-----cceEEEeccC----------------CCCcEEEccCCCCC--CCCC
Q 022592          132 IVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS----------------NDPSVIACDMSNTP--LNSS  188 (294)
Q Consensus       132 ~~~~l~~~~~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~----------------~~~~~~~~d~~~lp--~~~~  188 (294)
                      ++......+...+|||+|||+|.++..++     ..++|||+.+                +++++++.|+.++.  ....
T Consensus        35 LL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~  114 (248)
T COG4123          35 LLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFA  114 (248)
T ss_pred             HHHhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhccccc
Confidence            33333333346799999999999999997     3789999987                57889999998754  3345


Q ss_pred             CccEEEEcccccCC-------------------CHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHC
Q 022592          189 SVDVAVFCLSLMGI-------------------NFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDL  249 (294)
Q Consensus       189 ~fD~Vi~~~~l~~~-------------------~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~  249 (294)
                      +||+|+|+.-++-.                   +...+++.+..+|||||.+.++--.         -...++..++.+.
T Consensus       115 ~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~---------erl~ei~~~l~~~  185 (248)
T COG4123         115 SFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRP---------ERLAEIIELLKSY  185 (248)
T ss_pred             ccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecH---------HHHHHHHHHHHhc
Confidence            79999998776531                   3568899999999999999997421         1346789999999


Q ss_pred             CCeEEEEec------cCCeEEEEEEEECC
Q 022592          250 GFAPVSKDF------SNKMFIMFYFKKKE  272 (294)
Q Consensus       250 Gf~~~~~~~------~~~~f~~i~~~k~~  272 (294)
                      +|....+.+      ......++.++|..
T Consensus       186 ~~~~k~i~~V~p~~~k~A~~vLv~~~k~~  214 (248)
T COG4123         186 NLEPKRIQFVYPKIGKAANRVLVEAIKGG  214 (248)
T ss_pred             CCCceEEEEecCCCCCcceEEEEEEecCC
Confidence            998877433      35567777777764

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.13  E-value=6.9e-10  Score=95.19  Aligned_cols=105  Identities=17%  Similarity=0.271  Sum_probs=77.7

Q ss_pred             CCCCEEEEEcCcccHHHHHhc------cceEEEeccC----------------CCCcEEEccCCCC-CCCCCCccEEEEc
Q 022592          140 SPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----------------NDPSVIACDMSNT-PLNSSSVDVAVFC  196 (294)
Q Consensus       140 ~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~----------------~~~~~~~~d~~~l-p~~~~~fD~Vi~~  196 (294)
                      .++.+|||+|||+|.++..++      .+|+++|+++                .++.++.+|+.+. +...+.||+|++.
T Consensus        39 ~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~  118 (198)
T PRK00377         39 RKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIG  118 (198)
T ss_pred             CCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEEC
Confidence            367799999999999887653      3799999986                2456777787653 3334679999985


Q ss_pred             ccccCCCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEE
Q 022592          197 LSLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPV  254 (294)
Q Consensus       197 ~~l~~~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~  254 (294)
                      ..  ..++..++.++.++|+|||.+++....  .      .+..+....|++.||...
T Consensus       119 ~~--~~~~~~~l~~~~~~LkpgG~lv~~~~~--~------~~~~~~~~~l~~~g~~~~  166 (198)
T PRK00377        119 GG--SEKLKEIISASWEIIKKGGRIVIDAIL--L------ETVNNALSALENIGFNLE  166 (198)
T ss_pred             CC--cccHHHHHHHHHHHcCCCcEEEEEeec--H------HHHHHHHHHHHHcCCCeE
Confidence            42  246788999999999999999874321  1      134677888999998543

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.13  E-value=3.6e-10  Score=102.54  Aligned_cols=104  Identities=20%  Similarity=0.284  Sum_probs=75.1

Q ss_pred             CCCEEEEEcCcccHHHHHhc----cceEEEeccCC----------------CCcEEEccCCCCCCCCCCccEEEEccccc
Q 022592          141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVSN----------------DPSVIACDMSNTPLNSSSVDVAVFCLSLM  200 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~~----------------~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~  200 (294)
                      ++.+|||+|||+|.++..++    ..|+|+|+++.                .+.+...+.  .+..+++||+|+++....
T Consensus       159 ~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~--~~~~~~~fDlVvan~~~~  236 (288)
T TIGR00406       159 KDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYL--EQPIEGKADVIVANILAE  236 (288)
T ss_pred             CCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccc--ccccCCCceEEEEecCHH
Confidence            56799999999999887765    37999999972                223333332  233457899999875432


Q ss_pred             CCCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEEe
Q 022592          201 GINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSKD  257 (294)
Q Consensus       201 ~~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~  257 (294)
                        ....++.++.++|+|||.++++.+...        ..+++.+.+++. |.++...
T Consensus       237 --~l~~ll~~~~~~LkpgG~li~sgi~~~--------~~~~v~~~~~~~-f~~~~~~  282 (288)
T TIGR00406       237 --VIKELYPQFSRLVKPGGWLILSGILET--------QAQSVCDAYEQG-FTVVEIR  282 (288)
T ss_pred             --HHHHHHHHHHHHcCCCcEEEEEeCcHh--------HHHHHHHHHHcc-CceeeEe
Confidence              345788999999999999999875321        346788888776 8777643

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.11  E-value=4.6e-10  Score=97.53  Aligned_cols=89  Identities=17%  Similarity=0.183  Sum_probs=68.5

Q ss_pred             HHHHHHhhccCCCCEEEEEcCcccHHHHHhc---c---ceEEEeccC---------------CCCcEEEccCCCCCCCCC
Q 022592          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK---N---KVFSFDLVS---------------NDPSVIACDMSNTPLNSS  188 (294)
Q Consensus       130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~---~v~gvD~s~---------------~~~~~~~~d~~~lp~~~~  188 (294)
                      ..+++.+... ++.+|||||||+|.++..++   .   .|+++|+++               .++.++.+|+........
T Consensus        67 ~~~~~~l~~~-~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~  145 (215)
T TIGR00080        67 AMMTELLELK-PGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLA  145 (215)
T ss_pred             HHHHHHhCCC-CcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccC
Confidence            4456666544 67899999999999988776   2   399999987               367888899876544456


Q ss_pred             CccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEE
Q 022592          189 SVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIA  224 (294)
Q Consensus       189 ~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~  224 (294)
                      +||+|++.....+     ....+.+.|+|||+|++.
T Consensus       146 ~fD~Ii~~~~~~~-----~~~~~~~~L~~gG~lv~~  176 (215)
T TIGR00080       146 PYDRIYVTAAGPK-----IPEALIDQLKEGGILVMP  176 (215)
T ss_pred             CCCEEEEcCCccc-----ccHHHHHhcCcCcEEEEE
Confidence            8999998766543     345678899999999885

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.10  E-value=9.5e-10  Score=101.97  Aligned_cols=128  Identities=18%  Similarity=0.230  Sum_probs=88.9

Q ss_pred             HHHHHHhhccCCCCEEEEEcCcccHHHHHhc-----cceEEEeccC------------C--CCcEEEccCCCCCCCCCCc
Q 022592          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS------------N--DPSVIACDMSNTPLNSSSV  190 (294)
Q Consensus       130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~------------~--~~~~~~~d~~~lp~~~~~f  190 (294)
                      ..+++.+... ...+|||+|||+|.++..++     ..|+++|+++            .  ...++..|+...  ..+.|
T Consensus       186 ~lLl~~l~~~-~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~--~~~~f  262 (342)
T PRK09489        186 QLLLSTLTPH-TKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSD--IKGRF  262 (342)
T ss_pred             HHHHHhcccc-CCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccc--cCCCc
Confidence            4556666544 34589999999999988776     2799999996            1  234666676542  25789


Q ss_pred             cEEEEcccccC-C-----CHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEEeccCCeEE
Q 022592          191 DVAVFCLSLMG-I-----NFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSKDFSNKMFI  264 (294)
Q Consensus       191 D~Vi~~~~l~~-~-----~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~f~  264 (294)
                      |+|+++..+|+ .     ....++.++.++|+|||.|+++.  ..+.+      .+   ..+++. |..+++-..+..|.
T Consensus       263 DlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVa--n~~l~------y~---~~l~~~-Fg~~~~la~~~~f~  330 (342)
T PRK09489        263 DMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVA--NAFLP------YP---DLLDET-FGSHEVLAQTGRFK  330 (342)
T ss_pred             cEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEE--eCCCC------hH---HHHHHH-cCCeEEEEeCCCEE
Confidence            99999998886 1     34689999999999999999964  22221      12   223322 44455555677888


Q ss_pred             EEEEEECC
Q 022592          265 MFYFKKKE  272 (294)
Q Consensus       265 ~i~~~k~~  272 (294)
                      ++.++|.+
T Consensus       331 v~~a~~~~  338 (342)
T PRK09489        331 VYRAIMTR  338 (342)
T ss_pred             EEEEEccC
Confidence            88887654

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=99.10  E-value=8.3e-11  Score=100.60  Aligned_cols=118  Identities=15%  Similarity=0.257  Sum_probs=85.3

Q ss_pred             CCCEEEEEcCcccHHHHHhc---cceEEEeccCCCC----------cEEEccCCC-CC-CCCCCccEEEEcccccCC-CH
Q 022592          141 PSLVIADFGCGDARLAKSVK---NKVFSFDLVSNDP----------SVIACDMSN-TP-LNSSSVDVAVFCLSLMGI-NF  204 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~~~~----------~~~~~d~~~-lp-~~~~~fD~Vi~~~~l~~~-~~  204 (294)
                      +..++||+|||||..+..+.   ...+|||+|.+.+          .+.++++.. ++ ...+.||+|++..||.+. +.
T Consensus       125 ~F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~L  204 (287)
T COG4976         125 PFRRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADVLPYLGAL  204 (287)
T ss_pred             ccceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhhHHHhhcch
Confidence            35689999999999887775   5899999998432          233334332 22 345789999999999986 88


Q ss_pred             HHHHHHHHHhcCcCcEEEEEee--cCC--C--CCCCCC-CCHHHHHHHHHHCCCeEEEEec
Q 022592          205 PNYLQEAQRVLKPSGWLLIAEV--KSR--F--DPNTGG-ADPNKFSKAVCDLGFAPVSKDF  258 (294)
Q Consensus       205 ~~~l~el~r~LkpgG~l~i~e~--~~~--~--~~~~~~-~~~~~~~~~l~~~Gf~~~~~~~  258 (294)
                      ..++..+...|+|||.|.++.-  ..+  |  .|...+ .+..-+..++...||+++....
T Consensus       205 e~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~  265 (287)
T COG4976         205 EGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAIED  265 (287)
T ss_pred             hhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEeec
Confidence            9999999999999999999721  111  1  111111 2445678999999999988654

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.09  E-value=3.2e-09  Score=96.12  Aligned_cols=115  Identities=20%  Similarity=0.226  Sum_probs=84.2

Q ss_pred             CCCEEEEEcCcccHHHHHhc-----cceEEEeccC----------------CCCcEEEccCCCCCCCCCCccEEEEcccc
Q 022592          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSVDVAVFCLSL  199 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~----------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l  199 (294)
                      +..+|||+|||+|.++..++     ..|+|+|+|+                .++.++.+|+.. ++++++||+|+++...
T Consensus       121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPPy  199 (284)
T TIGR03533       121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPPY  199 (284)
T ss_pred             CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhh-ccCCCCccEEEECCCC
Confidence            34689999999999988886     2799999997                246788888754 2345689999986321


Q ss_pred             c-------------CC-------------CHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeE
Q 022592          200 M-------------GI-------------NFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAP  253 (294)
Q Consensus       200 ~-------------~~-------------~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~  253 (294)
                      .             |.             ....++..+.++|+|||++++ ++.         .+.+.+..++.+.||.-
T Consensus       200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~-e~g---------~~~~~v~~~~~~~~~~~  269 (284)
T TIGR03533       200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVV-EVG---------NSMEALEEAYPDVPFTW  269 (284)
T ss_pred             CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEE-EEC---------cCHHHHHHHHHhCCCce
Confidence            1             10             024678899999999999886 332         23468889999999988


Q ss_pred             EEEeccCCeEEEE
Q 022592          254 VSKDFSNKMFIMF  266 (294)
Q Consensus       254 ~~~~~~~~~f~~i  266 (294)
                      ...+.....|+.+
T Consensus       270 ~~~~~~~~~~~~~  282 (284)
T TIGR03533       270 LEFENGGDGVFLL  282 (284)
T ss_pred             eeecCCCcEEEEE
Confidence            7766666655554

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=99.09  E-value=1.2e-09  Score=93.12  Aligned_cols=127  Identities=19%  Similarity=0.181  Sum_probs=89.9

Q ss_pred             EEEEEcCcccHHHHHhccceE-----EEeccC---------------CCC-cEEEccCCCCC--C------CCCCccEEE
Q 022592          144 VIADFGCGDARLAKSVKNKVF-----SFDLVS---------------NDP-SVIACDMSNTP--L------NSSSVDVAV  194 (294)
Q Consensus       144 ~VLDiGcG~G~~~~~l~~~v~-----gvD~s~---------------~~~-~~~~~d~~~lp--~------~~~~fD~Vi  194 (294)
                      +|||||||||..+.+++...-     -.|+..               +++ .-+..|+...+  .      ..++||+|+
T Consensus        28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~  107 (204)
T PF06080_consen   28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIF  107 (204)
T ss_pred             eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceee
Confidence            599999999999988874221     112221               111 12344554432  2      245899999


Q ss_pred             EcccccCCC---HHHHHHHHHHhcCcCcEEEEEeecC------------------CCCCCCCCCCHHHHHHHHHHCCCeE
Q 022592          195 FCLSLMGIN---FPNYLQEAQRVLKPSGWLLIAEVKS------------------RFDPNTGGADPNKFSKAVCDLGFAP  253 (294)
Q Consensus       195 ~~~~l~~~~---~~~~l~el~r~LkpgG~l~i~e~~~------------------~~~~~~~~~~~~~~~~~l~~~Gf~~  253 (294)
                      +..++|...   ...+++.+.++|+|||.|+++....                  ..++..+..+.+++..+..++|+..
T Consensus       108 ~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~GL~l  187 (204)
T PF06080_consen  108 CINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHGLEL  187 (204)
T ss_pred             ehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCCCcc
Confidence            999999754   4588999999999999999984221                  1233344468999999999999999


Q ss_pred             EEEeccCCeEEEEEEEE
Q 022592          254 VSKDFSNKMFIMFYFKK  270 (294)
Q Consensus       254 ~~~~~~~~~f~~i~~~k  270 (294)
                      +........-.+++|+|
T Consensus       188 ~~~~~MPANN~~Lvfrk  204 (204)
T PF06080_consen  188 EEDIDMPANNLLLVFRK  204 (204)
T ss_pred             CcccccCCCCeEEEEeC
Confidence            88777777777888875

The function of this family is unknown.

>PHA03411 putative methyltransferase; Provisional

Probab=99.08  E-value=1.5e-09  Score=96.60  Aligned_cols=112  Identities=18%  Similarity=0.199  Sum_probs=84.3

Q ss_pred             CCCEEEEEcCcccHHHHHhc-----cceEEEeccC----------CCCcEEEccCCCCCCCCCCccEEEEcccccCCC--
Q 022592          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS----------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGIN--  203 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~----------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~~--  203 (294)
                      ...+|||+|||+|.++..++     ..|+|+|+++          .++.++.+|+..... ..+||+|+++..+.+.+  
T Consensus        64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~-~~kFDlIIsNPPF~~l~~~  142 (279)
T PHA03411         64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFES-NEKFDVVISNPPFGKINTT  142 (279)
T ss_pred             cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcc-cCCCcEEEEcCCccccCch
Confidence            34689999999999877663     3799999998          357789999987653 46899999988887621  


Q ss_pred             -------------------HHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEE
Q 022592          204 -------------------FPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVS  255 (294)
Q Consensus       204 -------------------~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~  255 (294)
                                         ...++.....+|+|+|.+++.--...+  .....+.+++.++|+++||....
T Consensus       143 d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~--y~~sl~~~~y~~~l~~~g~~~~~  211 (279)
T PHA03411        143 DTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPY--YDGTMKSNKYLKWSKQTGLVTYA  211 (279)
T ss_pred             hhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEecccc--ccccCCHHHHHHHHHhcCcEecC
Confidence                               235667778899999977775211111  13346889999999999997644

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.07  E-value=7e-10  Score=103.56  Aligned_cols=94  Identities=20%  Similarity=0.290  Sum_probs=74.1

Q ss_pred             HHHHHhhccCCCCEEEEEcCcccHHHHHhc-----cceEEEeccC---------------CCCcEEEccCCCC--CCCCC
Q 022592          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSNT--PLNSS  188 (294)
Q Consensus       131 ~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~---------------~~~~~~~~d~~~l--p~~~~  188 (294)
                      .+++.+... .+..+||||||+|.++..++     ..++|+|++.               .++.++.+|+..+  .++++
T Consensus       113 ~~~~~~~~~-~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~  191 (390)
T PRK14121        113 NFLDFISKN-QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSN  191 (390)
T ss_pred             HHHHHhcCC-CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCC
Confidence            455555543 45689999999999999887     3799999986               4778899998654  57789


Q ss_pred             CccEEEEcccccCC-C------HHHHHHHHHHhcCcCcEEEEEe
Q 022592          189 SVDVAVFCLSLMGI-N------FPNYLQEAQRVLKPSGWLLIAE  225 (294)
Q Consensus       189 ~fD~Vi~~~~l~~~-~------~~~~l~el~r~LkpgG~l~i~e  225 (294)
                      ++|.|++.+...|. .      ...++.++.|+|+|||.+.+..
T Consensus       192 s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~T  235 (390)
T PRK14121        192 SVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRT  235 (390)
T ss_pred             ceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEE
Confidence            99999987665553 1      1589999999999999999963

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.06  E-value=4.1e-09  Score=95.45  Aligned_cols=103  Identities=20%  Similarity=0.341  Sum_probs=74.3

Q ss_pred             CEEEEEcCcccHHHHHhc-----cceEEEeccC----------------CCCcEEEccCCCCCCCCCCccEEEEccc---
Q 022592          143 LVIADFGCGDARLAKSVK-----NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSVDVAVFCLS---  198 (294)
Q Consensus       143 ~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~----------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~---  198 (294)
                      .+|||+|||+|.++..++     ..|+|+|+|+                .++.++.+|+.. +++..+||+|+++..   
T Consensus       116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi~  194 (284)
T TIGR00536       116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYID  194 (284)
T ss_pred             CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc-cCcCCCccEEEECCCCCC
Confidence            589999999999988776     3799999998                137788888865 344458999998631   


Q ss_pred             ----------ccCC-------------CHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHH-HCCCeEE
Q 022592          199 ----------LMGI-------------NFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVC-DLGFAPV  254 (294)
Q Consensus       199 ----------l~~~-------------~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~-~~Gf~~~  254 (294)
                                +.|.             ....++..+.++|+|||++++ ++...        ..+.+.+++. ..||..+
T Consensus       195 ~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~-e~g~~--------q~~~~~~~~~~~~~~~~~  265 (284)
T TIGR00536       195 EEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVC-EIGNW--------QQKSLKELLRIKFTWYDV  265 (284)
T ss_pred             cchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEE-EECcc--------HHHHHHHHHHhcCCCcee
Confidence                      2221             134678899999999999877 33221        2357777777 4688654


Q ss_pred             E
Q 022592          255 S  255 (294)
Q Consensus       255 ~  255 (294)
                      .
T Consensus       266 ~  266 (284)
T TIGR00536       266 E  266 (284)
T ss_pred             E
Confidence            4

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=99.05  E-value=1.3e-09  Score=92.85  Aligned_cols=117  Identities=17%  Similarity=0.260  Sum_probs=84.4

Q ss_pred             HHHHHHhhccC-CCCEEEEEcCcccHHHHHhc---cceEEEeccCCC----------CcEEEccC-CCCCCCCCCccEEE
Q 022592          130 NIIVKWLKDHS-PSLVIADFGCGDARLAKSVK---NKVFSFDLVSND----------PSVIACDM-SNTPLNSSSVDVAV  194 (294)
Q Consensus       130 ~~~~~~l~~~~-~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~~~----------~~~~~~d~-~~lp~~~~~fD~Vi  194 (294)
                      ++.++.+.... ...-|||||||+|..+..+.   ...+|+|+|+..          -.++.+|+ +.+||..++||.||
T Consensus        38 eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~I  117 (270)
T KOG1541|consen   38 ERALELLALPGPKSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVI  117 (270)
T ss_pred             HHHHHHhhCCCCCCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEE
Confidence            45566655432 24579999999999998887   367899999831          25778888 45999999999999


Q ss_pred             EcccccCC--------CH----HHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCe
Q 022592          195 FCLSLMGI--------NF----PNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFA  252 (294)
Q Consensus       195 ~~~~l~~~--------~~----~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~  252 (294)
                      +..++.|.        ++    ..|+..++.+|++|+..++--     .+... -..+-+......+||.
T Consensus       118 SISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Qf-----Ypen~-~q~d~i~~~a~~aGF~  181 (270)
T KOG1541|consen  118 SISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQF-----YPENE-AQIDMIMQQAMKAGFG  181 (270)
T ss_pred             EeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEe-----cccch-HHHHHHHHHHHhhccC
Confidence            99998872        22    367888999999999998842     22111 1334555666778874

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=99.05  E-value=4.6e-10  Score=96.22  Aligned_cols=161  Identities=19%  Similarity=0.258  Sum_probs=97.9

Q ss_pred             HHHHHHHhcChhhHHHHHHhHHhhhccCCCcHHHHHHHHhhcc-----CCCCEEEEEcCcccHHHHHhc----cceEEEe
Q 022592           97 KEALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIVKWLKDH-----SPSLVIADFGCGDARLAKSVK----NKVFSFD  167 (294)
Q Consensus        97 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~VLDiGcG~G~~~~~l~----~~v~gvD  167 (294)
                      ..+.+||+..+..-+-+..+|..... -+......++..+...     ....+.||.|||-|+.+..+.    ..|-.+|
T Consensus         7 ~~a~~YW~~v~atvdGMLGG~~~is~-~Di~gS~~FL~~l~~~~~~~~~~~~~alDcGAGIGRVTk~lLl~~f~~VDlVE   85 (218)
T PF05891_consen    7 EKAKEYWENVPATVDGMLGGFGHISR-IDIQGSRNFLKKLKRGRKPGKPKFNRALDCGAGIGRVTKGLLLPVFDEVDLVE   85 (218)
T ss_dssp             HHHHHHHHTS-SSHHHHTTT-GGGHH-HHHHHHHHHHHCCCT---------SEEEEET-TTTHHHHHTCCCC-SEEEEEE
T ss_pred             HHHHHHHcCCCCCccccccCCCCCCh-HHHHHHHHHHHHHHhhcccCCCCcceEEecccccchhHHHHHHHhcCEeEEec
Confidence            45566777666666666656642211 0011123344444332     134589999999999998775    3666677


Q ss_pred             ccCC--------------C-CcEEEccCCCCCCCCCCccEEEEcccccCC---CHHHHHHHHHHhcCcCcEEEEEeecC-
Q 022592          168 LVSN--------------D-PSVIACDMSNTPLNSSSVDVAVFCLSLMGI---NFPNYLQEAQRVLKPSGWLLIAEVKS-  228 (294)
Q Consensus       168 ~s~~--------------~-~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~---~~~~~l~el~r~LkpgG~l~i~e~~~-  228 (294)
                      +++.              . ..+.++.+.+...+...||+|++.+++.|.   +...+|..+...|+|||.++|=|=.. 
T Consensus        86 p~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~  165 (218)
T PF05891_consen   86 PVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSS  165 (218)
T ss_dssp             S-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEES
T ss_pred             cCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCC
Confidence            6651              1 245666666655445789999999999994   67799999999999999999965221 


Q ss_pred             ----CCCCCCCC--CCHHHHHHHHHHCCCeEEEEec
Q 022592          229 ----RFDPNTGG--ADPNKFSKAVCDLGFAPVSKDF  258 (294)
Q Consensus       229 ----~~~~~~~~--~~~~~~~~~l~~~Gf~~~~~~~  258 (294)
                          .++..+..  .+.+.+..++++||++++....
T Consensus       166 ~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~  201 (218)
T PF05891_consen  166 SGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEEK  201 (218)
T ss_dssp             SSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEEE
T ss_pred             CCCcccCCccCeeecCHHHHHHHHHHcCCEEEEecc
Confidence                12222222  4678999999999999998544

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.03  E-value=8.4e-09  Score=97.06  Aligned_cols=122  Identities=18%  Similarity=0.192  Sum_probs=84.1

Q ss_pred             CCcHHHHHHHHhhcc-CCCCEEEEEcCcccHHHHHhc-----cceEEEeccC--------------CCCcEEEccCCCCC
Q 022592          125 PELPVNIIVKWLKDH-SPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS--------------NDPSVIACDMSNTP  184 (294)
Q Consensus       125 ~~~~~~~~~~~l~~~-~~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~--------------~~~~~~~~d~~~lp  184 (294)
                      |+...+.+++.+... .++.+|||+|||+|.++..++     ..|+|+|+|+              .++.++.+|+....
T Consensus       234 PRpeTE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~  313 (423)
T PRK14966        234 PRPETEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTD  313 (423)
T ss_pred             CCccHHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccc
Confidence            333344455544322 245689999999999988765     3799999998              24678889986543


Q ss_pred             CC-CCCccEEEEcccccCC----------------------C----HHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCC
Q 022592          185 LN-SSSVDVAVFCLSLMGI----------------------N----FPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGA  237 (294)
Q Consensus       185 ~~-~~~fD~Vi~~~~l~~~----------------------~----~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~  237 (294)
                      ++ .++||+|+++......                      +    ...++..+.+.|+|||.+++ ++..        .
T Consensus       314 l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lil-EiG~--------~  384 (423)
T PRK14966        314 MPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLL-EHGF--------D  384 (423)
T ss_pred             cccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEE-EECc--------c
Confidence            32 4579999997643210                      1    23667777889999999876 3321        1


Q ss_pred             CHHHHHHHHHHCCCeEEE
Q 022592          238 DPNKFSKAVCDLGFAPVS  255 (294)
Q Consensus       238 ~~~~~~~~l~~~Gf~~~~  255 (294)
                      ..+.+.+++++.||..+.
T Consensus       385 Q~e~V~~ll~~~Gf~~v~  402 (423)
T PRK14966        385 QGAAVRGVLAENGFSGVE  402 (423)
T ss_pred             HHHHHHHHHHHCCCcEEE
Confidence            347899999999997665

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.03  E-value=5.7e-09  Score=93.67  Aligned_cols=106  Identities=23%  Similarity=0.384  Sum_probs=77.9

Q ss_pred             CCCEEEEEcCcccHHHHHhc-----cceEEEeccC---------------CCCcEEEccCCCCCCCCCCccEEEEccccc
Q 022592          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLM  200 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~---------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~  200 (294)
                      ++.+|||+|||+|.++..++     ..++|+|+++               .++.++.+|+... ++.++||+|+++....
T Consensus       108 ~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~-~~~~~fD~Iv~npPy~  186 (275)
T PRK09328        108 EPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEP-LPGGRFDLIVSNPPYI  186 (275)
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCc-CCCCceeEEEECCCcC
Confidence            55689999999999888776     3799999997               2567888887542 3357899999864332


Q ss_pred             CC---------------------------CHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeE
Q 022592          201 GI---------------------------NFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAP  253 (294)
Q Consensus       201 ~~---------------------------~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~  253 (294)
                      ..                           ....++.++.++|+|||.+++. ...        ...+.+..++.+.||..
T Consensus       187 ~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e-~g~--------~~~~~~~~~l~~~gf~~  257 (275)
T PRK09328        187 PEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLE-IGY--------DQGEAVRALLAAAGFAD  257 (275)
T ss_pred             CcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEE-ECc--------hHHHHHHHHHHhCCCce
Confidence            10                           1246788888999999999883 211        13467889999999976


Q ss_pred             EEE
Q 022592          254 VSK  256 (294)
Q Consensus       254 ~~~  256 (294)
                      +..
T Consensus       258 v~~  260 (275)
T PRK09328        258 VET  260 (275)
T ss_pred             eEE
Confidence            553

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.02  E-value=2.6e-10  Score=88.92  Aligned_cols=84  Identities=25%  Similarity=0.378  Sum_probs=67.3

Q ss_pred             CCEEEEEcCcccHHHHHhc----cceEEEeccC----------------CCCcEEEccCCCCC--CCCCCccEEEEcccc
Q 022592          142 SLVIADFGCGDARLAKSVK----NKVFSFDLVS----------------NDPSVIACDMSNTP--LNSSSVDVAVFCLSL  199 (294)
Q Consensus       142 ~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~----------------~~~~~~~~d~~~lp--~~~~~fD~Vi~~~~l  199 (294)
                      +.+|||+|||+|.++..++    ..++|+|+++                .++.++++|+....  +++++||+|+++..+
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~   80 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY   80 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred             CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence            3589999999999888775    5899999998                35789999998765  778999999998887


Q ss_pred             cCC---------CHHHHHHHHHHhcCcCcEEEEEe
Q 022592          200 MGI---------NFPNYLQEAQRVLKPSGWLLIAE  225 (294)
Q Consensus       200 ~~~---------~~~~~l~el~r~LkpgG~l~i~e  225 (294)
                      ...         ....+++++.++|+|||.++++.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~  115 (117)
T PF13659_consen   81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT  115 (117)
T ss_dssp             TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence            641         13588999999999999999863

...

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.01  E-value=7.4e-09  Score=92.14  Aligned_cols=108  Identities=19%  Similarity=0.294  Sum_probs=77.7

Q ss_pred             CCEEEEEcCcccHHHHHhc-----cceEEEeccC------------CCCcEEEccCCCC-CC-CCCCccEEEEcccccC-
Q 022592          142 SLVIADFGCGDARLAKSVK-----NKVFSFDLVS------------NDPSVIACDMSNT-PL-NSSSVDVAVFCLSLMG-  201 (294)
Q Consensus       142 ~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~------------~~~~~~~~d~~~l-p~-~~~~fD~Vi~~~~l~~-  201 (294)
                      ..+|||+|||+|.++..++     ..|+|+|+++            .+..++.+|+.+. +- ..+.||+|+++.-... 
T Consensus        87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~  166 (251)
T TIGR03704        87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVPT  166 (251)
T ss_pred             CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCCc
Confidence            3589999999999988775     2799999998            2356888888652 21 1357999998764321 


Q ss_pred             -----C-----------------C----HHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEE
Q 022592          202 -----I-----------------N----FPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVS  255 (294)
Q Consensus       202 -----~-----------------~----~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~  255 (294)
                           .                 +    ...++..+.++|+|||++++.- ...        ....+..++++.||....
T Consensus       167 ~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~-~~~--------~~~~v~~~l~~~g~~~~~  237 (251)
T TIGR03704       167 DAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVET-SER--------QAPLAVEAFARAGLIARV  237 (251)
T ss_pred             hhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE-Ccc--------hHHHHHHHHHHCCCCcee
Confidence                 0                 1    2367778889999999999753 211        236788999999997766


Q ss_pred             Eec
Q 022592          256 KDF  258 (294)
Q Consensus       256 ~~~  258 (294)
                      ...
T Consensus       238 ~~~  240 (251)
T TIGR03704       238 ASS  240 (251)
T ss_pred             eEc
Confidence            544

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.01  E-value=6.6e-09  Score=86.99  Aligned_cols=114  Identities=20%  Similarity=0.219  Sum_probs=85.9

Q ss_pred             HHHHhhccCCCCEEEEEcCcccHHHHHhc-----cceEEEeccC---------------CCCcEEEccCCCCCCCCCCcc
Q 022592          132 IVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVD  191 (294)
Q Consensus       132 ~~~~l~~~~~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~---------------~~~~~~~~d~~~lp~~~~~fD  191 (294)
                      .+..|... ++.+++|||||+|..+..++     .+|+++|-.+               +++.++.+++...-....++|
T Consensus        26 ~ls~L~~~-~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~d  104 (187)
T COG2242          26 TLSKLRPR-PGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPD  104 (187)
T ss_pred             HHHhhCCC-CCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCC
Confidence            45555555 77899999999999998876     4899999766               577888888865321222799


Q ss_pred             EEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCC-eEEEEe
Q 022592          192 VAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGF-APVSKD  257 (294)
Q Consensus       192 ~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf-~~~~~~  257 (294)
                      .|+...+   -+.+.+++.+...|+|||.+++--+.-        -+.....+.+++.|+ +++.+.
T Consensus       105 aiFIGGg---~~i~~ile~~~~~l~~ggrlV~naitl--------E~~~~a~~~~~~~g~~ei~~v~  160 (187)
T COG2242         105 AIFIGGG---GNIEEILEAAWERLKPGGRLVANAITL--------ETLAKALEALEQLGGREIVQVQ  160 (187)
T ss_pred             EEEECCC---CCHHHHHHHHHHHcCcCCeEEEEeecH--------HHHHHHHHHHHHcCCceEEEEE
Confidence            9998776   577899999999999999999953221        133556788999999 666643

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=99.00  E-value=4.5e-09  Score=92.24  Aligned_cols=115  Identities=19%  Similarity=0.248  Sum_probs=84.1

Q ss_pred             CCEEEEEcCcccHHHHHhc---cceEEEeccCC------CCcEEEccCCCCCCCCCCccEEEEcccccC-CCHHHHHHHH
Q 022592          142 SLVIADFGCGDARLAKSVK---NKVFSFDLVSN------DPSVIACDMSNTPLNSSSVDVAVFCLSLMG-INFPNYLQEA  211 (294)
Q Consensus       142 ~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~~------~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~-~~~~~~l~el  211 (294)
                      ..++||||+|.|..+..++   .+|++.++|..      .-.|.+.+..+..-.+.+||+|.|..+|-. .+|...|+.|
T Consensus        95 ~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~rL~~kg~~vl~~~~w~~~~~~fDvIscLNvLDRc~~P~~LL~~i  174 (265)
T PF05219_consen   95 DKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRWRLSKKGFTVLDIDDWQQTDFKFDVISCLNVLDRCDRPLTLLRDI  174 (265)
T ss_pred             CCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHHHHHhCCCeEEehhhhhccCCceEEEeehhhhhccCCHHHHHHHH
Confidence            4579999999999999887   58999999982      222334444444444568999999999986 6899999999


Q ss_pred             HHhcCcCcEEEEEeecCC----------CCCCC-----CCC----CHHHHHHHHHHCCCeEEEE
Q 022592          212 QRVLKPSGWLLIAEVKSR----------FDPNT-----GGA----DPNKFSKAVCDLGFAPVSK  256 (294)
Q Consensus       212 ~r~LkpgG~l~i~e~~~~----------~~~~~-----~~~----~~~~~~~~l~~~Gf~~~~~  256 (294)
                      ++.|+|+|.++++-+.+.          ..+..     .+.    ..+.+.+.++.+||+++..
T Consensus       175 ~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g~~~E~~v~~l~~v~~p~GF~v~~~  238 (265)
T PF05219_consen  175 RRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKGATFEEQVSSLVNVFEPAGFEVERW  238 (265)
T ss_pred             HHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence            999999999999743221          11110     011    3345558899999999883

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=99.00  E-value=5.6e-09  Score=89.31  Aligned_cols=129  Identities=26%  Similarity=0.337  Sum_probs=100.5

Q ss_pred             CEEEEEcCcccHHHHHhc--cceEEEeccCCCCcEEEccCCCCCCC---CCCccEEEEcccccCC-C---HHHHHHHHHH
Q 022592          143 LVIADFGCGDARLAKSVK--NKVFSFDLVSNDPSVIACDMSNTPLN---SSSVDVAVFCLSLMGI-N---FPNYLQEAQR  213 (294)
Q Consensus       143 ~~VLDiGcG~G~~~~~l~--~~v~gvD~s~~~~~~~~~d~~~lp~~---~~~fD~Vi~~~~l~~~-~---~~~~l~el~r  213 (294)
                      .++|||||=+........  -.|+.+|+.+....+..+|+.+.|+|   .+.||+|+++.+|.++ +   +...+..+.+
T Consensus        53 lrlLEVGals~~N~~s~~~~fdvt~IDLns~~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~  132 (219)
T PF11968_consen   53 LRLLEVGALSTDNACSTSGWFDVTRIDLNSQHPGILQQDFMERPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHK  132 (219)
T ss_pred             ceEEeecccCCCCcccccCceeeEEeecCCCCCCceeeccccCCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHH
Confidence            589999998665443322  25999999999999999999998875   6789999999999994 3   4589999999


Q ss_pred             hcCcCcE-----EEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEEeccCCeEEEEEEEECCc
Q 022592          214 VLKPSGW-----LLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSKDFSNKMFIMFYFKKKEK  273 (294)
Q Consensus       214 ~LkpgG~-----l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~f~~i~~~k~~~  273 (294)
                      .|+|+|.     |+++-..+- .....+++.+.+..+|+..||..+...... ....+.|++...
T Consensus       133 fL~~~g~~~~~~LFlVlP~~C-v~NSRy~~~~~l~~im~~LGf~~~~~~~~~-Kl~y~l~r~~~~  195 (219)
T PF11968_consen  133 FLKPPGLSLFPSLFLVLPLPC-VTNSRYMTEERLREIMESLGFTRVKYKKSK-KLAYWLFRKSGK  195 (219)
T ss_pred             HhCCCCccCcceEEEEeCchH-hhcccccCHHHHHHHHHhCCcEEEEEEecC-eEEEEEEeecCC
Confidence            9999999     888754332 234445788999999999999999875544 444556666543

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=99.00  E-value=2.5e-09  Score=92.63  Aligned_cols=89  Identities=19%  Similarity=0.179  Sum_probs=65.9

Q ss_pred             HHHHHhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccC---------------CCCcEEEccCCCCCCCCCCccE
Q 022592          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVDV  192 (294)
Q Consensus       131 ~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~---------------~~~~~~~~d~~~lp~~~~~fD~  192 (294)
                      .++..+... ++.+|||||||+|.++..++   ..|+++|+++               .++.+..+|........++||+
T Consensus        69 ~l~~~l~~~-~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  147 (212)
T PRK00312         69 RMTELLELK-PGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDR  147 (212)
T ss_pred             HHHHhcCCC-CCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCE
Confidence            344444433 66799999999999877665   4799999987               2467888887653333478999


Q ss_pred             EEEcccccCCCHHHHHHHHHHhcCcCcEEEEEe
Q 022592          193 AVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAE  225 (294)
Q Consensus       193 Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e  225 (294)
                      |++...+++.     ...+.+.|+|||.+++.-
T Consensus       148 I~~~~~~~~~-----~~~l~~~L~~gG~lv~~~  175 (212)
T PRK00312        148 ILVTAAAPEI-----PRALLEQLKEGGILVAPV  175 (212)
T ss_pred             EEEccCchhh-----hHHHHHhcCCCcEEEEEE
Confidence            9998765433     456789999999999863

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=98.98  E-value=1.1e-09  Score=96.87  Aligned_cols=100  Identities=23%  Similarity=0.340  Sum_probs=82.3

Q ss_pred             cHHHHHHHHhhccCCCCEEEEEcCcccHHHHHhc-cceEEEeccC--------CCC-cEEEccCCCCCCCCCCccEEEEc
Q 022592          127 LPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK-NKVFSFDLVS--------NDP-SVIACDMSNTPLNSSSVDVAVFC  196 (294)
Q Consensus       127 ~~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~-~~v~gvD~s~--------~~~-~~~~~d~~~lp~~~~~fD~Vi~~  196 (294)
                      .+|....+++...+.+..++|+|||.|.++..-. ..++|+|++.        .+. ....+|+..+|+.+.+||.+++.
T Consensus        31 ~~Wp~v~qfl~~~~~gsv~~d~gCGngky~~~~p~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~lsi  110 (293)
T KOG1331|consen   31 APWPMVRQFLDSQPTGSVGLDVGCGNGKYLGVNPLCLIIGCDLCTGLLGGAKRSGGDNVCRADALKLPFREESFDAALSI  110 (293)
T ss_pred             CccHHHHHHHhccCCcceeeecccCCcccCcCCCcceeeecchhhhhccccccCCCceeehhhhhcCCCCCCccccchhh
Confidence            3455577777777678899999999998776543 3688999887        344 68899999999999999999999


Q ss_pred             ccccCC----CHHHHHHHHHHhcCcCcEEEEEee
Q 022592          197 LSLMGI----NFPNYLQEAQRVLKPSGWLLIAEV  226 (294)
Q Consensus       197 ~~l~~~----~~~~~l~el~r~LkpgG~l~i~e~  226 (294)
                      .++||.    -...+++++.|+|+|||...|.-|
T Consensus       111 avihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvw  144 (293)
T KOG1331|consen  111 AVIHHLSTRERRERALEELLRVLRPGGNALVYVW  144 (293)
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEe
Confidence            999994    245899999999999999888643

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.97  E-value=1.9e-08  Score=92.00  Aligned_cols=103  Identities=21%  Similarity=0.213  Sum_probs=75.4

Q ss_pred             CEEEEEcCcccHHHHHhc-----cceEEEeccC----------------CCCcEEEccCCCCCCCCCCccEEEEcccc--
Q 022592          143 LVIADFGCGDARLAKSVK-----NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSVDVAVFCLSL--  199 (294)
Q Consensus       143 ~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~----------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l--  199 (294)
                      .+|||+|||+|.++..++     ..|+|+|+|+                .++.++.+|+.. +++.++||+|+++...  
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsNPPyi~  213 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFA-ALPGRRYDLIVSNPPYVD  213 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhh-hCCCCCccEEEECCCCCC
Confidence            589999999999988876     3799999997                247788899754 2345689999987321  


Q ss_pred             -----------cCC-------------CHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEE
Q 022592          200 -----------MGI-------------NFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVS  255 (294)
Q Consensus       200 -----------~~~-------------~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~  255 (294)
                                 .|.             ....++.++.++|+|||.+++ ++..         +...+..++.+.||....
T Consensus       214 ~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~-E~g~---------~~~~~~~~~~~~~~~~~~  283 (307)
T PRK11805        214 AEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVV-EVGN---------SRVHLEEAYPDVPFTWLE  283 (307)
T ss_pred             ccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEE-EECc---------CHHHHHHHHhhCCCEEEE
Confidence                       110             024678999999999999987 4332         235688888888876654


Q ss_pred             E
Q 022592          256 K  256 (294)
Q Consensus       256 ~  256 (294)
                      .
T Consensus       284 ~  284 (307)
T PRK11805        284 F  284 (307)
T ss_pred             e
Confidence            4

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=98.96  E-value=1.1e-08  Score=91.84  Aligned_cols=127  Identities=23%  Similarity=0.311  Sum_probs=86.4

Q ss_pred             HHHHHHHhhccCCCCEEEEEcCcccHHHHHhc-----cceEEEeccC---------------CCCcEEEccCCCCCCCCC
Q 022592          129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSNTPLNSS  188 (294)
Q Consensus       129 ~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~---------------~~~~~~~~d~~~lp~~~~  188 (294)
                      .+.+++.+... .+.+|||+|||.|.++..++     ..++.+|++.               .+..+...|+.. +..+ 
T Consensus       147 S~lLl~~l~~~-~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~-~v~~-  223 (300)
T COG2813         147 SRLLLETLPPD-LGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYE-PVEG-  223 (300)
T ss_pred             HHHHHHhCCcc-CCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccc-cccc-
Confidence            45577777766 34499999999999999887     3889999886               122345555544 3333 


Q ss_pred             CccEEEEcccccC---CC---HHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEEeccCCe
Q 022592          189 SVDVAVFCLSLMG---IN---FPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSKDFSNKM  262 (294)
Q Consensus       189 ~fD~Vi~~~~l~~---~~---~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~  262 (294)
                      +||+|+|+.-+|-   ..   -.+++.++.+.|++||.|+|+--  .+-         .+...|++. |..++.-..+.-
T Consensus       224 kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan--~~l---------~y~~~L~~~-Fg~v~~la~~~g  291 (300)
T COG2813         224 KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN--RHL---------PYEKKLKEL-FGNVEVLAKNGG  291 (300)
T ss_pred             cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc--CCC---------ChHHHHHHh-cCCEEEEEeCCC
Confidence            8999999999985   22   23899999999999999999742  221         122334332 444454455666


Q ss_pred             EEEEEEEE
Q 022592          263 FIMFYFKK  270 (294)
Q Consensus       263 f~~i~~~k  270 (294)
                      |.++..+|
T Consensus       292 f~Vl~a~k  299 (300)
T COG2813         292 FKVLRAKK  299 (300)
T ss_pred             EEEEEEec
Confidence            77776654

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=98.90  E-value=6e-09  Score=77.53  Aligned_cols=81  Identities=30%  Similarity=0.545  Sum_probs=66.8

Q ss_pred             EEEEEcCcccHHHHHhc----cceEEEeccC---------------CCCcEEEccCCCCCC-CCCCccEEEEcccccC-C
Q 022592          144 VIADFGCGDARLAKSVK----NKVFSFDLVS---------------NDPSVIACDMSNTPL-NSSSVDVAVFCLSLMG-I  202 (294)
Q Consensus       144 ~VLDiGcG~G~~~~~l~----~~v~gvD~s~---------------~~~~~~~~d~~~lp~-~~~~fD~Vi~~~~l~~-~  202 (294)
                      +|||+|||.|.++..+.    ..++++|+++               ..+.++.+|+.+... ..++||+|++..++++ .
T Consensus         1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~   80 (107)
T cd02440           1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHLV   80 (107)
T ss_pred             CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeehh
Confidence            48999999999887776    3889999986               245677788877553 4578999999999987 4


Q ss_pred             -CHHHHHHHHHHhcCcCcEEEEE
Q 022592          203 -NFPNYLQEAQRVLKPSGWLLIA  224 (294)
Q Consensus       203 -~~~~~l~el~r~LkpgG~l~i~  224 (294)
                       ....++..+.+.|+|||.+++.
T Consensus        81 ~~~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          81 EDLARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             hHHHHHHHHHHHHcCCCCEEEEE
Confidence             6779999999999999999875

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.90  E-value=1.2e-08  Score=89.95  Aligned_cols=84  Identities=27%  Similarity=0.371  Sum_probs=69.0

Q ss_pred             CCCEEEEEcCcccHHHHHhc-----cceEEEeccC--------CCCcEEEccCCCCCCCCCCccEEEEcccccCC---CH
Q 022592          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS--------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGI---NF  204 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~--------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~---~~  204 (294)
                      ...+|||||+|+|.++..++     -+++.+|+-.        +++.++.+|+. -++|.  +|+|++.++||+.   +.
T Consensus       100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~~~rv~~~~gd~f-~~~P~--~D~~~l~~vLh~~~d~~~  176 (241)
T PF00891_consen  100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKEADRVEFVPGDFF-DPLPV--ADVYLLRHVLHDWSDEDC  176 (241)
T ss_dssp             TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHHTTTEEEEES-TT-TCCSS--ESEEEEESSGGGS-HHHH
T ss_pred             CccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhccccccccccccccHH-hhhcc--ccceeeehhhhhcchHHH
Confidence            44689999999999998887     2788899864        68999999998 66665  9999999999975   34


Q ss_pred             HHHHHHHHHhcCcC--cEEEEEeec
Q 022592          205 PNYLQEAQRVLKPS--GWLLIAEVK  227 (294)
Q Consensus       205 ~~~l~el~r~Lkpg--G~l~i~e~~  227 (294)
                      ..+|+.+++.|+||  |.|+|.|..
T Consensus       177 ~~iL~~~~~al~pg~~g~llI~e~~  201 (241)
T PF00891_consen  177 VKILRNAAAALKPGKDGRLLIIEMV  201 (241)
T ss_dssp             HHHHHHHHHHSEECTTEEEEEEEEE
T ss_pred             HHHHHHHHHHhCCCCCCeEEEEeec
Confidence            58899999999999  999999854

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=98.90  E-value=3e-08  Score=95.09  Aligned_cols=110  Identities=15%  Similarity=0.183  Sum_probs=78.9

Q ss_pred             CCCCEEEEEcCcccHHHHHhc------cceEEEeccC---------------CCCcEEEccCCCCC----CCCCCccEEE
Q 022592          140 SPSLVIADFGCGDARLAKSVK------NKVFSFDLVS---------------NDPSVIACDMSNTP----LNSSSVDVAV  194 (294)
Q Consensus       140 ~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~---------------~~~~~~~~d~~~lp----~~~~~fD~Vi  194 (294)
                      .++.+|||+|||+|..+..++      ..|+++|+++               .++.++.+|+..++    +..++||.|+
T Consensus       251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl  330 (434)
T PRK14901        251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRIL  330 (434)
T ss_pred             CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEEE
Confidence            367899999999999877665      3799999997               25678888988765    4467899999


Q ss_pred             Ecc------cccC-CC----------------HHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHC-C
Q 022592          195 FCL------SLMG-IN----------------FPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDL-G  250 (294)
Q Consensus       195 ~~~------~l~~-~~----------------~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~-G  250 (294)
                      +..      ++.+ .+                ...++.++.++|||||.|++++..-...     -+.+.+..++++. +
T Consensus       331 ~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~-----Ene~~v~~~l~~~~~  405 (434)
T PRK14901        331 LDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPA-----ENEAQIEQFLARHPD  405 (434)
T ss_pred             EeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChh-----hHHHHHHHHHHhCCC
Confidence            642      3322 22                2477999999999999999875331111     1345677778776 5


Q ss_pred             CeEE
Q 022592          251 FAPV  254 (294)
Q Consensus       251 f~~~  254 (294)
                      |++.
T Consensus       406 ~~~~  409 (434)
T PRK14901        406 WKLE  409 (434)
T ss_pred             cEec
Confidence            7654

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.89  E-value=2.5e-08  Score=97.24  Aligned_cols=104  Identities=19%  Similarity=0.279  Sum_probs=75.3

Q ss_pred             CCEEEEEcCcccHHHHHhc-----cceEEEeccC----------------CCCcEEEccCCCCCCCCCCccEEEEccccc
Q 022592          142 SLVIADFGCGDARLAKSVK-----NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLM  200 (294)
Q Consensus       142 ~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~----------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~  200 (294)
                      ..+|||+|||+|.++..++     ..|+|+|+|+                .++.++.+|+.. +++.++||+|+++....
T Consensus       139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPPYi  217 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE-NIEKQKFDFIVSNPPYI  217 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhh-hCcCCCccEEEECCCCC
Confidence            3589999999999988775     3799999997                246678888754 23456899999854221


Q ss_pred             --------------C---------CC----HHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeE
Q 022592          201 --------------G---------IN----FPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAP  253 (294)
Q Consensus       201 --------------~---------~~----~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~  253 (294)
                                    |         .+    ...++..+.++|+|||.+++ ++..        ...+.+..++.+.||..
T Consensus       218 ~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~l-Eig~--------~q~~~v~~~~~~~g~~~  288 (506)
T PRK01544        218 SHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIIL-EIGF--------KQEEAVTQIFLDHGYNI  288 (506)
T ss_pred             CchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEE-EECC--------chHHHHHHHHHhcCCCc
Confidence                          1         01    23567788899999999877 4321        23478889999999986


Q ss_pred             EE
Q 022592          254 VS  255 (294)
Q Consensus       254 ~~  255 (294)
                      +.
T Consensus       289 ~~  290 (506)
T PRK01544        289 ES  290 (506)
T ss_pred             eE
Confidence            55

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=98.86  E-value=5.4e-09  Score=89.62  Aligned_cols=117  Identities=19%  Similarity=0.319  Sum_probs=91.7

Q ss_pred             CCEEEEEcCcccHHHHHhc----cceEEEeccCC-------------CCcEEEccCCCCCCCCCCccEEEEcccccCC-C
Q 022592          142 SLVIADFGCGDARLAKSVK----NKVFSFDLVSN-------------DPSVIACDMSNTPLNSSSVDVAVFCLSLMGI-N  203 (294)
Q Consensus       142 ~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~~-------------~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~-~  203 (294)
                      ...++|||||-|.+...+.    .+++-+|.|..             ...+.++|-+.++|.++++|+|+++.++||. +
T Consensus        73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW~Nd  152 (325)
T KOG2940|consen   73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHWTND  152 (325)
T ss_pred             CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhhhhcc
Confidence            3479999999999999887    37788998861             2346788999999999999999999999996 8


Q ss_pred             HHHHHHHHHHhcCcCcEEEEEeec-------------------CCCCCCCCCC-CHHHHHHHHHHCCCeEEEEec
Q 022592          204 FPNYLQEAQRVLKPSGWLLIAEVK-------------------SRFDPNTGGA-DPNKFSKAVCDLGFAPVSKDF  258 (294)
Q Consensus       204 ~~~~l~el~r~LkpgG~l~i~e~~-------------------~~~~~~~~~~-~~~~~~~~l~~~Gf~~~~~~~  258 (294)
                      .+..+..+...|||.|.++-+-+.                   .-+.|+...+ ...++-.+|..+||....++.
T Consensus       153 LPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slqLAelER~GGiSphiSPf~qvrDiG~LL~rAGF~m~tvDt  227 (325)
T KOG2940|consen  153 LPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQLAELEREGGISPHISPFTQVRDIGNLLTRAGFSMLTVDT  227 (325)
T ss_pred             CchHHHHHHHhcCCCccchhHHhccccHHHHHHHhhHHHHHhccCCCCCcChhhhhhhhhhHHhhcCcccceecc
Confidence            899999999999999998875221                   1223333333 345788999999998876543

>PRK07402 precorrin-6B methylase; Provisional

Probab=98.86  E-value=1.9e-08  Score=86.00  Aligned_cols=91  Identities=20%  Similarity=0.277  Sum_probs=65.2

Q ss_pred             HHHHhhccCCCCEEEEEcCcccHHHHHhc-----cceEEEeccC---------------CCCcEEEccCCC-CCCCCCCc
Q 022592          132 IVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSN-TPLNSSSV  190 (294)
Q Consensus       132 ~~~~l~~~~~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~---------------~~~~~~~~d~~~-lp~~~~~f  190 (294)
                      ++..+.. .++.+|||+|||+|.++..++     ..|+++|+++               .+++++.+|+.. ++.....+
T Consensus        32 l~~~l~~-~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~  110 (196)
T PRK07402         32 LISQLRL-EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAP  110 (196)
T ss_pred             HHHhcCC-CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCC
Confidence            4555543 366799999999999987775     4799999987               246777787754 22212335


Q ss_pred             cEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEee
Q 022592          191 DVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEV  226 (294)
Q Consensus       191 D~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e~  226 (294)
                      |.|++..   ..+...+++++.++|+|||.+++...
T Consensus       111 d~v~~~~---~~~~~~~l~~~~~~LkpgG~li~~~~  143 (196)
T PRK07402        111 DRVCIEG---GRPIKEILQAVWQYLKPGGRLVATAS  143 (196)
T ss_pred             CEEEEEC---CcCHHHHHHHHHHhcCCCeEEEEEee
Confidence            7665432   13568999999999999999999753

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=98.84  E-value=3.4e-09  Score=100.42  Aligned_cols=123  Identities=18%  Similarity=0.221  Sum_probs=81.5

Q ss_pred             EEEEEcCcccHHHHHhcc-ceEEEeccC-----CCCcEE--------Ecc--CCCCCCCCCCccEEEEcccccC--CCHH
Q 022592          144 VIADFGCGDARLAKSVKN-KVFSFDLVS-----NDPSVI--------ACD--MSNTPLNSSSVDVAVFCLSLMG--INFP  205 (294)
Q Consensus       144 ~VLDiGcG~G~~~~~l~~-~v~gvD~s~-----~~~~~~--------~~d--~~~lp~~~~~fD~Vi~~~~l~~--~~~~  205 (294)
                      .+||||||.|.|+..|.. .|+.+-+.+     .+++|.        .+-  ...+||++++||+|.|+..+..  .+-.
T Consensus       120 ~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g  199 (506)
T PF03141_consen  120 TALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPNDG  199 (506)
T ss_pred             EEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcCcchhhhhhccccccCCccchhhhhcccccccchhccc
Confidence            589999999999999884 565554444     233332        112  2458999999999999888874  2445


Q ss_pred             HHHHHHHHhcCcCcEEEEEeecCC-CCCCCCCCCHHHHHHHHHHCCCeEEEEeccCCeEEEEEEEEC
Q 022592          206 NYLQEAQRVLKPSGWLLIAEVKSR-FDPNTGGADPNKFSKAVCDLGFAPVSKDFSNKMFIMFYFKKK  271 (294)
Q Consensus       206 ~~l~el~r~LkpgG~l~i~e~~~~-~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~f~~i~~~k~  271 (294)
                      .+|-++.|+|+|||+++++...-. -......-....+.++.+...|+.+.....     +.+++|.
T Consensus       200 ~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~~~~~~~l~~~lCW~~va~~~~-----~aIwqKp  261 (506)
T PF03141_consen  200 FLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEEWNAMEDLAKSLCWKKVAEKGD-----TAIWQKP  261 (506)
T ss_pred             ceeehhhhhhccCceEEecCCcccccchHHHHHHHHHHHHHHHHHHHHHheeeCC-----EEEEecc
Confidence            688899999999999999743222 000000112346677788888887764332     5556664

; GO: 0008168 methyltransferase activity

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=98.82  E-value=7.7e-09  Score=89.38  Aligned_cols=90  Identities=20%  Similarity=0.238  Sum_probs=65.5

Q ss_pred             HHHHHHHhhccCCCCEEEEEcCcccHHHHHhc------cceEEEeccC---------------CCCcEEEccCCCCCCCC
Q 022592          129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS---------------NDPSVIACDMSNTPLNS  187 (294)
Q Consensus       129 ~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~---------------~~~~~~~~d~~~lp~~~  187 (294)
                      +..+++.+... ++.+|||||||+|+++..++      ..|+++|..+               .++.++.+|........
T Consensus        61 ~a~~l~~L~l~-pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~  139 (209)
T PF01135_consen   61 VARMLEALDLK-PGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEE  139 (209)
T ss_dssp             HHHHHHHTTC--TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG
T ss_pred             HHHHHHHHhcC-CCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccC
Confidence            35567777655 88899999999999988776      2588999887               37789999987644456


Q ss_pred             CCccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEE
Q 022592          188 SSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIA  224 (294)
Q Consensus       188 ~~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~  224 (294)
                      +.||.|++..+....     =..+.+.|++||+|++.
T Consensus       140 apfD~I~v~~a~~~i-----p~~l~~qL~~gGrLV~p  171 (209)
T PF01135_consen  140 APFDRIIVTAAVPEI-----PEALLEQLKPGGRLVAP  171 (209)
T ss_dssp             -SEEEEEESSBBSS-------HHHHHTEEEEEEEEEE
T ss_pred             CCcCEEEEeeccchH-----HHHHHHhcCCCcEEEEE
Confidence            789999998876422     23477789999999995

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.82  E-value=1.5e-08  Score=86.66  Aligned_cols=92  Identities=20%  Similarity=0.233  Sum_probs=72.2

Q ss_pred             HHHHHHHHhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccC---------------CCCcEEEccCCCCCCCCCC
Q 022592          128 PVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSS  189 (294)
Q Consensus       128 ~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~---------------~~~~~~~~d~~~lp~~~~~  189 (294)
                      .+..+++.|... ++.+|||||||+|+.+..++   .+|+.+|..+               .++.+.++|-..-.-+.+.
T Consensus        60 ~vA~m~~~L~~~-~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~aP  138 (209)
T COG2518          60 MVARMLQLLELK-PGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEAP  138 (209)
T ss_pred             HHHHHHHHhCCC-CCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCCC
Confidence            356677777766 77899999999999888776   5899999876               4788999998775555688


Q ss_pred             ccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEe
Q 022592          190 VDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAE  225 (294)
Q Consensus       190 fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e  225 (294)
                      ||.|+...+....     =..+.+.|+|||++++-.
T Consensus       139 yD~I~Vtaaa~~v-----P~~Ll~QL~~gGrlv~Pv  169 (209)
T COG2518         139 YDRIIVTAAAPEV-----PEALLDQLKPGGRLVIPV  169 (209)
T ss_pred             cCEEEEeeccCCC-----CHHHHHhcccCCEEEEEE
Confidence            9999987764322     134677899999999964

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=98.81  E-value=1.1e-07  Score=91.56  Aligned_cols=117  Identities=15%  Similarity=0.156  Sum_probs=78.4

Q ss_pred             HHHHhhccCCCCEEEEEcCcccHHHHHhc------cceEEEeccC---------------CCCcEEEccCCCCCCCCCCc
Q 022592          132 IVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSV  190 (294)
Q Consensus       132 ~~~~l~~~~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~---------------~~~~~~~~d~~~lp~~~~~f  190 (294)
                      +...+....++.+|||+|||+|..+..++      ..|+++|+++               .++.++.+|+..++ ++++|
T Consensus       241 l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-~~~~f  319 (445)
T PRK14904        241 LACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS-PEEQP  319 (445)
T ss_pred             HHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc-cCCCC
Confidence            33333333467799999999998766554      3799999998               24678888987765 45789


Q ss_pred             cEEEEcc------ccc-C------CC----------HHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHH
Q 022592          191 DVAVFCL------SLM-G------IN----------FPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVC  247 (294)
Q Consensus       191 D~Vi~~~------~l~-~------~~----------~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~  247 (294)
                      |+|++..      ++. +      .+          ...++.++.++|+|||.|+++...-...     -+...+..+|+
T Consensus       320 D~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~-----Ene~~v~~~l~  394 (445)
T PRK14904        320 DAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPE-----ENELQIEAFLQ  394 (445)
T ss_pred             CEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChh-----hHHHHHHHHHH
Confidence            9999621      111 1      11          1358999999999999999976432211     12345667777


Q ss_pred             HC-CCeEE
Q 022592          248 DL-GFAPV  254 (294)
Q Consensus       248 ~~-Gf~~~  254 (294)
                      .. +|...
T Consensus       395 ~~~~~~~~  402 (445)
T PRK14904        395 RHPEFSAE  402 (445)
T ss_pred             hCCCCEEe
Confidence            66 46544

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=98.79  E-value=8.3e-08  Score=91.84  Aligned_cols=116  Identities=14%  Similarity=0.131  Sum_probs=79.2

Q ss_pred             HHhhccCCCCEEEEEcCcccHHHHHhc-----cceEEEeccCC--------------CCcEEEccCCCCC--CCCCCccE
Q 022592          134 KWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVSN--------------DPSVIACDMSNTP--LNSSSVDV  192 (294)
Q Consensus       134 ~~l~~~~~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~~--------------~~~~~~~d~~~lp--~~~~~fD~  192 (294)
                      ..+.. .++.+|||+|||+|..+..++     ..|+++|+++.              ++.++.+|+..++  ++.++||.
T Consensus       238 ~~l~~-~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~  316 (427)
T PRK10901        238 TLLAP-QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDR  316 (427)
T ss_pred             HHcCC-CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCE
Confidence            34433 367899999999999887765     37999999982              3467888987654  34578999


Q ss_pred             EEEccccc------------C-CC----------HHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHC
Q 022592          193 AVFCLSLM------------G-IN----------FPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDL  249 (294)
Q Consensus       193 Vi~~~~l~------------~-~~----------~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~  249 (294)
                      |++.....            | ..          ...++..+.++|+|||.++++...-...     -+.+.+...+++.
T Consensus       317 Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~-----Ene~~v~~~l~~~  391 (427)
T PRK10901        317 ILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPE-----ENEQQIKAFLARH  391 (427)
T ss_pred             EEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChh-----hCHHHHHHHHHhC
Confidence            99533211            1 01          1368999999999999999876422111     2345667777765


Q ss_pred             -CCeEEE
Q 022592          250 -GFAPVS  255 (294)
Q Consensus       250 -Gf~~~~  255 (294)
                       +|+++.
T Consensus       392 ~~~~~~~  398 (427)
T PRK10901        392 PDAELLD  398 (427)
T ss_pred             CCCEEec
Confidence             576544

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.79  E-value=2.7e-08  Score=91.42  Aligned_cols=88  Identities=14%  Similarity=0.188  Sum_probs=65.3

Q ss_pred             HHHHHhhccCCCCEEEEEcCcccHHHHHhcc------ceEEEeccC---------------CCCcEEEccCCCCCCCCCC
Q 022592          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVKN------KVFSFDLVS---------------NDPSVIACDMSNTPLNSSS  189 (294)
Q Consensus       131 ~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~~------~v~gvD~s~---------------~~~~~~~~d~~~lp~~~~~  189 (294)
                      .+++.+... ++.+|||||||+|.++..++.      .|+++|+++               .++.++.+|+...+...++
T Consensus        71 ~ll~~L~i~-~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~  149 (322)
T PRK13943         71 LFMEWVGLD-KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAP  149 (322)
T ss_pred             HHHHhcCCC-CCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCC
Confidence            344444333 667999999999999887762      589999997               2567888888766555578


Q ss_pred             ccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEE
Q 022592          190 VDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIA  224 (294)
Q Consensus       190 fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~  224 (294)
                      ||+|++...+.+     ....+.+.|+|||.+++.
T Consensus       150 fD~Ii~~~g~~~-----ip~~~~~~LkpgG~Lvv~  179 (322)
T PRK13943        150 YDVIFVTVGVDE-----VPETWFTQLKEGGRVIVP  179 (322)
T ss_pred             ccEEEECCchHH-----hHHHHHHhcCCCCEEEEE
Confidence            999998766543     234577899999998884

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=98.78  E-value=1.8e-07  Score=83.48  Aligned_cols=117  Identities=20%  Similarity=0.212  Sum_probs=85.2

Q ss_pred             CCEEEEEcCcccHHHHHhcc---ceEEEeccC------------------------------------------------
Q 022592          142 SLVIADFGCGDARLAKSVKN---KVFSFDLVS------------------------------------------------  170 (294)
Q Consensus       142 ~~~VLDiGcG~G~~~~~l~~---~v~gvD~s~------------------------------------------------  170 (294)
                      ..+||--|||-|+++..++.   .+.|.+.|-                                                
T Consensus        57 ~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv~p  136 (270)
T PF07942_consen   57 KIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDVDP  136 (270)
T ss_pred             ccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCcCc
Confidence            46899999999999999984   566766663                                                


Q ss_pred             -------CCCcEEEccCCCCCCCC---CCccEEEEcccccC-CCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCC-----
Q 022592          171 -------NDPSVIACDMSNTPLNS---SSVDVAVFCLSLMG-INFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNT-----  234 (294)
Q Consensus       171 -------~~~~~~~~d~~~lp~~~---~~fD~Vi~~~~l~~-~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~-----  234 (294)
                             .++.+..+|+..+..++   ++||+|+.++-+-- .|....|..|.++|||||..+=....-......     
T Consensus       137 ~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~~~~~~  216 (270)
T PF07942_consen  137 SSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGGYWINFGPLLYHFEPMSIPNE  216 (270)
T ss_pred             ccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCCEEEecCCccccCCCCCCCCC
Confidence                   13445667776654444   78999999866654 478899999999999999555443221111111     


Q ss_pred             --CCCCHHHHHHHHHHCCCeEEEEec
Q 022592          235 --GGADPNKFSKAVCDLGFAPVSKDF  258 (294)
Q Consensus       235 --~~~~~~~~~~~l~~~Gf~~~~~~~  258 (294)
                        -.++.+++..+++..||+++....
T Consensus       217 ~sveLs~eEi~~l~~~~GF~~~~~~~  242 (270)
T PF07942_consen  217 MSVELSLEEIKELIEKLGFEIEKEES  242 (270)
T ss_pred             cccCCCHHHHHHHHHHCCCEEEEEEE
Confidence              347999999999999999987444

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.77  E-value=3.7e-08  Score=87.29  Aligned_cols=117  Identities=19%  Similarity=0.294  Sum_probs=77.6

Q ss_pred             CCCEEEEEcCcccHHHHHhc----cceEEEeccCC-------------------------------------------CC
Q 022592          141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVSN-------------------------------------------DP  173 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~~-------------------------------------------~~  173 (294)
                      .+.++||||||+-.+-..-+    ..++..|.++.                                           .+
T Consensus        56 ~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~V  135 (256)
T PF01234_consen   56 KGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRAV  135 (256)
T ss_dssp             -EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHHE
T ss_pred             CCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHhh
Confidence            35589999999966532222    36778887751                                           01


Q ss_pred             -cEEEccCCCC-CCCC-----CCccEEEEcccccC--CC---HHHHHHHHHHhcCcCcEEEEEeecCCCCCCC-------
Q 022592          174 -SVIACDMSNT-PLNS-----SSVDVAVFCLSLMG--IN---FPNYLQEAQRVLKPSGWLLIAEVKSRFDPNT-------  234 (294)
Q Consensus       174 -~~~~~d~~~l-p~~~-----~~fD~Vi~~~~l~~--~~---~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~-------  234 (294)
                       .++.||+... |+..     ..||+|++++.|+.  .+   ...+++.+.++|||||.|+++.+.....-..       
T Consensus       136 k~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F~~  215 (256)
T PF01234_consen  136 KQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHKFPC  215 (256)
T ss_dssp             EEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEEEE-
T ss_pred             ceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEeccc
Confidence             3678899763 3332     25999999999996  23   5688999999999999999986544221111       


Q ss_pred             CCCCHHHHHHHHHHCCCeEEEEe
Q 022592          235 GGADPNKFSKAVCDLGFAPVSKD  257 (294)
Q Consensus       235 ~~~~~~~~~~~l~~~Gf~~~~~~  257 (294)
                      -.++.+.+.+.|+++||.+....
T Consensus       216 l~l~ee~v~~al~~aG~~i~~~~  238 (256)
T PF01234_consen  216 LPLNEEFVREALEEAGFDIEDLE  238 (256)
T ss_dssp             --B-HHHHHHHHHHTTEEEEEEE
T ss_pred             ccCCHHHHHHHHHHcCCEEEecc
Confidence            12588999999999999998865

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=98.76  E-value=1.5e-07  Score=90.54  Aligned_cols=110  Identities=14%  Similarity=0.133  Sum_probs=75.6

Q ss_pred             CCCCEEEEEcCcccHHHHHhc------cceEEEeccC---------------CCCcEEEccCCCCC--CCCCCccEEEEc
Q 022592          140 SPSLVIADFGCGDARLAKSVK------NKVFSFDLVS---------------NDPSVIACDMSNTP--LNSSSVDVAVFC  196 (294)
Q Consensus       140 ~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~---------------~~~~~~~~d~~~lp--~~~~~fD~Vi~~  196 (294)
                      .++.+|||+|||+|..+..++      ..|+++|+++               .++.++.+|+..++  ++ ++||+|++.
T Consensus       249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl~D  327 (444)
T PRK14902        249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFA-EKFDKILVD  327 (444)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhc-ccCCEEEEc
Confidence            366799999999999887665      3799999987               24678888987653  33 679999975


Q ss_pred             ccccC-------C------C----------HHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCC-Ce
Q 022592          197 LSLMG-------I------N----------FPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLG-FA  252 (294)
Q Consensus       197 ~~l~~-------~------~----------~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~G-f~  252 (294)
                      .....       .      .          ...++..+.++|+|||.|+++...-....     +...+..++++.+ |+
T Consensus       328 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~E-----ne~vv~~~l~~~~~~~  402 (444)
T PRK14902        328 APCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEE-----NEEVIEAFLEEHPEFE  402 (444)
T ss_pred             CCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhh-----hHHHHHHHHHhCCCcE
Confidence            43111       1      1          13579999999999999997643221111     2345566777663 76


Q ss_pred             EEE
Q 022592          253 PVS  255 (294)
Q Consensus       253 ~~~  255 (294)
                      ++.
T Consensus       403 ~~~  405 (444)
T PRK14902        403 LVP  405 (444)
T ss_pred             Eec
Confidence            655

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=98.76  E-value=7.7e-08  Score=92.06  Aligned_cols=119  Identities=13%  Similarity=0.183  Sum_probs=79.1

Q ss_pred             HHHHhhccCCCCEEEEEcCcccHHHHHhc------cceEEEeccC---------------CCCcEEEccCCCCC-CCCCC
Q 022592          132 IVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS---------------NDPSVIACDMSNTP-LNSSS  189 (294)
Q Consensus       132 ~~~~l~~~~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~---------------~~~~~~~~d~~~lp-~~~~~  189 (294)
                      ++..+....++.+|||+|||+|..+..++      ..|+++|+++               .++.++.+|+..++ +..++
T Consensus       228 ~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~  307 (431)
T PRK14903        228 IVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDT  307 (431)
T ss_pred             HHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhcc
Confidence            33333333467899999999998776554      4799999998               24567888887765 44678


Q ss_pred             ccEEEEcccccC-----CC------------------HHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHH
Q 022592          190 VDVAVFCLSLMG-----IN------------------FPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAV  246 (294)
Q Consensus       190 fD~Vi~~~~l~~-----~~------------------~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l  246 (294)
                      ||.|++......     .+                  ..+.|..+.++|+|||.++++...-...     -+.+.+..+|
T Consensus       308 fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~e-----Ene~vv~~fl  382 (431)
T PRK14903        308 FDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKE-----ENTEVVKRFV  382 (431)
T ss_pred             CCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChh-----hCHHHHHHHH
Confidence            999996332211     11                  1356889999999999999986542211     1335556666


Q ss_pred             HHC-CCeEEE
Q 022592          247 CDL-GFAPVS  255 (294)
Q Consensus       247 ~~~-Gf~~~~  255 (294)
                      ++. +|.++.
T Consensus       383 ~~~~~~~~~~  392 (431)
T PRK14903        383 YEQKDAEVID  392 (431)
T ss_pred             HhCCCcEEec
Confidence            654 565443

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=98.72  E-value=5e-07  Score=81.66  Aligned_cols=115  Identities=23%  Similarity=0.307  Sum_probs=76.4

Q ss_pred             EEEEEcCcccHHHHHhc-----cceEEEeccCC------------C---CcEEEccCCCCCCCCCCccEEEEcccccCC-
Q 022592          144 VIADFGCGDARLAKSVK-----NKVFSFDLVSN------------D---PSVIACDMSNTPLNSSSVDVAVFCLSLMGI-  202 (294)
Q Consensus       144 ~VLDiGcG~G~~~~~l~-----~~v~gvD~s~~------------~---~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~-  202 (294)
                      +|||||||+|..+..++     ..|+|+|+|+.            +   +.++.+|... ++ .++||+|+++.-.--. 
T Consensus       113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~-~~-~~~fDlIVsNPPYip~~  190 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFE-PL-RGKFDLIVSNPPYIPAE  190 (280)
T ss_pred             cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeeccc-cc-CCceeEEEeCCCCCCCc
Confidence            79999999999999887     28999999981            2   2344445433 12 2389999987654210 


Q ss_pred             -----------C--------------HHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCC-CeEEE-
Q 022592          203 -----------N--------------FPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLG-FAPVS-  255 (294)
Q Consensus       203 -----------~--------------~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~G-f~~~~-  255 (294)
                                 +              ...++.++.+.|+|||.+++- ...        -..+.+.+++.+.| |..+. 
T Consensus       191 ~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le-~g~--------~q~~~v~~~~~~~~~~~~v~~  261 (280)
T COG2890         191 DPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILE-IGL--------TQGEAVKALFEDTGFFEIVET  261 (280)
T ss_pred             ccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEE-ECC--------CcHHHHHHHHHhcCCceEEEE
Confidence                       1              236788899999998888874 221        13478999999999 65444 


Q ss_pred             EeccCCeEEEEEEE
Q 022592          256 KDFSNKMFIMFYFK  269 (294)
Q Consensus       256 ~~~~~~~f~~i~~~  269 (294)
                      .........++.++
T Consensus       262 ~~d~~g~~rv~~~~  275 (280)
T COG2890         262 LKDLFGRDRVVLAK  275 (280)
T ss_pred             EecCCCceEEEEEE
Confidence            22333344444443

>PHA03412 putative methyltransferase; Provisional

Probab=98.72  E-value=1.5e-07  Score=82.18  Aligned_cols=112  Identities=14%  Similarity=0.163  Sum_probs=77.9

Q ss_pred             CCCEEEEEcCcccHHHHHhc--------cceEEEeccC----------CCCcEEEccCCCCCCCCCCccEEEEcccccCC
Q 022592          141 PSLVIADFGCGDARLAKSVK--------NKVFSFDLVS----------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGI  202 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~--------~~v~gvD~s~----------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~  202 (294)
                      .+.+|||+|||+|.++..++        ..|+++|+++          .++.++.+|+...++ +++||+||++.-+.-.
T Consensus        49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~-~~~FDlIIsNPPY~~~  127 (241)
T PHA03412         49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEF-DTLFDMAISNPPFGKI  127 (241)
T ss_pred             CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccc-cCCccEEEECCCCCCc
Confidence            35699999999999988664        2699999998          357889999987665 5689999998877621


Q ss_pred             ---C----------HHHHHHHHHHhcCcCcEEEEE-eecCCCCCC------CCCCCHHHHHHHHHHCCCeEE
Q 022592          203 ---N----------FPNYLQEAQRVLKPSGWLLIA-EVKSRFDPN------TGGADPNKFSKAVCDLGFAPV  254 (294)
Q Consensus       203 ---~----------~~~~l~el~r~LkpgG~l~i~-e~~~~~~~~------~~~~~~~~~~~~l~~~Gf~~~  254 (294)
                         +          ...++..+.+++++|+. ++- .+...-.+.      ....+...+.+++++.|+...
T Consensus       128 ~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-ILP~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (241)
T PHA03412        128 KTSDFKGKYTGAEFEYKVIERASQIARQGTF-IIPQMSANFRYSGTHYFRQDESTTSSKCKKFLDETGLEMN  198 (241)
T ss_pred             cccccCCcccccHHHHHHHHHHHHHcCCCEE-EeCcccccCcccCccceeeccCcccHHHHHHHHhcCeeec
Confidence               1          34688888886676664 331 222211111      222466788899999887553

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=98.72  E-value=5.2e-08  Score=87.35  Aligned_cols=87  Identities=13%  Similarity=0.144  Sum_probs=64.9

Q ss_pred             CCCCEEEEEcCcccHHHHHhc------cceEEEeccC---------------CCCcEEEccCCCCCCCCCCccEEEEccc
Q 022592          140 SPSLVIADFGCGDARLAKSVK------NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVDVAVFCLS  198 (294)
Q Consensus       140 ~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~---------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~  198 (294)
                      .++.+|||+|||+|..+..++      ..|+++|+++               .++.++..|+..++...+.||.|++...
T Consensus        70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~P  149 (264)
T TIGR00446        70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDAP  149 (264)
T ss_pred             CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcCC
Confidence            367899999999999887664      3799999997               2456778887766655567999996432


Q ss_pred             cc------C-CC----------------HHHHHHHHHHhcCcCcEEEEEee
Q 022592          199 LM------G-IN----------------FPNYLQEAQRVLKPSGWLLIAEV  226 (294)
Q Consensus       199 l~------~-~~----------------~~~~l~el~r~LkpgG~l~i~e~  226 (294)
                      ..      + .+                ...+|..+.++|+|||+|+.+..
T Consensus       150 csg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstc  200 (264)
T TIGR00446       150 CSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTC  200 (264)
T ss_pred             CCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence            11      1 00                13589999999999999988753

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=98.71  E-value=9.1e-08  Score=79.94  Aligned_cols=92  Identities=16%  Similarity=0.119  Sum_probs=65.3

Q ss_pred             HHHHHHhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccC-------------CCCcEEEccCCCCCCCCCCccEE
Q 022592          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS-------------NDPSVIACDMSNTPLNSSSVDVA  193 (294)
Q Consensus       130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~-------------~~~~~~~~d~~~lp~~~~~fD~V  193 (294)
                      +.+++.+... ++..|||||||+|.++..++   .+++++|+++             .++.++.+|+..+++++.+||.|
T Consensus         3 ~~i~~~~~~~-~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d~v   81 (169)
T smart00650        3 DKIVRAANLR-PGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPYKV   81 (169)
T ss_pred             HHHHHhcCCC-CcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCCEE
Confidence            3455555443 56799999999999999887   4799999997             25789999999988877779999


Q ss_pred             EEcccccCCCHHHHHHHHHHh--cCcCcEEEEE
Q 022592          194 VFCLSLMGINFPNYLQEAQRV--LKPSGWLLIA  224 (294)
Q Consensus       194 i~~~~l~~~~~~~~l~el~r~--LkpgG~l~i~  224 (294)
                      +++..++..  ...+..+.+.  +.++|.+++-
T Consensus        82 i~n~Py~~~--~~~i~~~l~~~~~~~~~~l~~q  112 (169)
T smart00650       82 VGNLPYNIS--TPILFKLLEEPPAFRDAVLMVQ  112 (169)
T ss_pred             EECCCcccH--HHHHHHHHhcCCCcceEEEEEE
Confidence            987655432  2333333332  3466666553

>PRK04457 spermidine synthase; Provisional

Probab=98.70  E-value=6.8e-08  Score=86.51  Aligned_cols=84  Identities=18%  Similarity=0.276  Sum_probs=63.5

Q ss_pred             CCCEEEEEcCcccHHHHHhc-----cceEEEeccC----------------CCCcEEEccCCC-CCCCCCCccEEEEccc
Q 022592          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS----------------NDPSVIACDMSN-TPLNSSSVDVAVFCLS  198 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~----------------~~~~~~~~d~~~-lp~~~~~fD~Vi~~~~  198 (294)
                      +..+|||||||+|.++..++     .+++++|+++                +++.++.+|+.. +.-..++||+|++.. 
T Consensus        66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~-  144 (262)
T PRK04457         66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG-  144 (262)
T ss_pred             CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC-
Confidence            45689999999999998775     3789999976                356778888754 222236799999753 


Q ss_pred             ccC------CCHHHHHHHHHHhcCcCcEEEEEe
Q 022592          199 LMG------INFPNYLQEAQRVLKPSGWLLIAE  225 (294)
Q Consensus       199 l~~------~~~~~~l~el~r~LkpgG~l~i~e  225 (294)
                      +..      .....+++++.++|+|||++++--
T Consensus       145 ~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~  177 (262)
T PRK04457        145 FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNL  177 (262)
T ss_pred             CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEc
Confidence            221      123699999999999999999853

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=98.70  E-value=2.7e-08  Score=91.76  Aligned_cols=85  Identities=21%  Similarity=0.378  Sum_probs=60.0

Q ss_pred             CCCEEEEEcCcccHHHHHhc----cceEEEeccCC-------------------------CCcEEEccCCCCC----CCC
Q 022592          141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVSN-------------------------DPSVIACDMSNTP----LNS  187 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~~-------------------------~~~~~~~d~~~lp----~~~  187 (294)
                      ++..|||||||-|..+.-..    ..++|+|++..                         ...++.+|.....    +++
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~  141 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP  141 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred             CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence            56799999999887655443    58999999971                         1235677765421    233


Q ss_pred             --CCccEEEEcccccC-C-C---HHHHHHHHHHhcCcCcEEEEEe
Q 022592          188 --SSVDVAVFCLSLMG-I-N---FPNYLQEAQRVLKPSGWLLIAE  225 (294)
Q Consensus       188 --~~fD~Vi~~~~l~~-~-~---~~~~l~el~r~LkpgG~l~i~e  225 (294)
                        ..||+|-|.++||+ + +   ...+|..+...|+|||+++.+.
T Consensus       142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~  186 (331)
T PF03291_consen  142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTT  186 (331)
T ss_dssp             TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence              58999999999998 2 2   4578999999999999999973

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=98.69  E-value=3.5e-07  Score=87.98  Aligned_cols=109  Identities=14%  Similarity=0.312  Sum_probs=75.5

Q ss_pred             HHHHhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccC---------------CCCcEEEccCCC----CCCCCCC
Q 022592          132 IVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS---------------NDPSVIACDMSN----TPLNSSS  189 (294)
Q Consensus       132 ~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~---------------~~~~~~~~d~~~----lp~~~~~  189 (294)
                      +++.+... ++.+|||+|||+|.++..++   ..|+|+|+|+               .++.++.+|+.+    .++.+++
T Consensus       289 vl~~l~~~-~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~  367 (443)
T PRK13168        289 ALEWLDPQ-PGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGG  367 (443)
T ss_pred             HHHHhcCC-CCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCC
Confidence            44444333 56799999999999998887   4899999998               257889999864    2344568


Q ss_pred             ccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHH---HHHHHCCCeEEEE
Q 022592          190 VDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFS---KAVCDLGFAPVSK  256 (294)
Q Consensus       190 fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~---~~l~~~Gf~~~~~  256 (294)
                      ||+|++...-.  .....+..+.+ ++|+++++++-            ++.++.   ..|.+.||++..+
T Consensus       368 fD~Vi~dPPr~--g~~~~~~~l~~-~~~~~ivyvSC------------np~tlaRDl~~L~~~gY~l~~i  422 (443)
T PRK13168        368 FDKVLLDPPRA--GAAEVMQALAK-LGPKRIVYVSC------------NPATLARDAGVLVEAGYRLKRA  422 (443)
T ss_pred             CCEEEECcCCc--ChHHHHHHHHh-cCCCeEEEEEe------------ChHHhhccHHHHhhCCcEEEEE
Confidence            99998764422  23456665555 68998888863            222221   3456789999883

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.69  E-value=4.5e-08  Score=83.76  Aligned_cols=84  Identities=17%  Similarity=0.260  Sum_probs=56.4

Q ss_pred             CCCEEEEEcCcccH--HHH--Hhc-------c---ceEEEeccC------------------------------------
Q 022592          141 PSLVIADFGCGDAR--LAK--SVK-------N---KVFSFDLVS------------------------------------  170 (294)
Q Consensus       141 ~~~~VLDiGcG~G~--~~~--~l~-------~---~v~gvD~s~------------------------------------  170 (294)
                      ...+|+..||++|.  ++.  .+.       .   +++|.|+|+                                    
T Consensus        31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~  110 (196)
T PF01739_consen   31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY  110 (196)
T ss_dssp             S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred             CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence            34689999999997  222  221       1   789999997                                    


Q ss_pred             -------CCCcEEEccCCCCCCCCCCccEEEEcccccCCCH---HHHHHHHHHhcCcCcEEEEE
Q 022592          171 -------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGINF---PNYLQEAQRVLKPSGWLLIA  224 (294)
Q Consensus       171 -------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~~~---~~~l~el~r~LkpgG~l~i~  224 (294)
                             .++.|...|+.+.+.+.+.||+|+|..+|.+++.   ..+++.+++.|+|||+|++.
T Consensus       111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG  174 (196)
T PF01739_consen  111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLG  174 (196)
T ss_dssp             TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-
T ss_pred             eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence                   3567888899884445678999999999999754   58999999999999999996

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=98.68  E-value=1.8e-07  Score=89.56  Aligned_cols=115  Identities=13%  Similarity=0.157  Sum_probs=75.5

Q ss_pred             HHHHhhccCCCCEEEEEcCcccHHHHHhc-----cceEEEeccCC------------CC--cE--EEccCCCCCC--CCC
Q 022592          132 IVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVSN------------DP--SV--IACDMSNTPL--NSS  188 (294)
Q Consensus       132 ~~~~l~~~~~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~~------------~~--~~--~~~d~~~lp~--~~~  188 (294)
                      +...+... ++.+|||+|||+|..+..++     ..|+++|+++.            .+  .+  ..+|....+.  +.+
T Consensus       230 ~~~~L~~~-~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~  308 (426)
T TIGR00563       230 VATWLAPQ-NEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENE  308 (426)
T ss_pred             HHHHhCCC-CCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccccccccc
Confidence            33444433 67899999999998777665     48999999982            12  22  4456554443  467


Q ss_pred             CccEEEEc------ccccC-CC----------------HHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHH
Q 022592          189 SVDVAVFC------LSLMG-IN----------------FPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKA  245 (294)
Q Consensus       189 ~fD~Vi~~------~~l~~-~~----------------~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~  245 (294)
                      +||.|++.      .++.+ .+                ...+|.++.++|||||.|++++..-...     -+...+..+
T Consensus       309 ~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~-----Ene~~v~~~  383 (426)
T TIGR00563       309 QFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPE-----ENSEQIKAF  383 (426)
T ss_pred             ccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChh-----hCHHHHHHH
Confidence            89999963      22332 12                2478999999999999999986432211     134556677


Q ss_pred             HHHC-CCe
Q 022592          246 VCDL-GFA  252 (294)
Q Consensus       246 l~~~-Gf~  252 (294)
                      +++. +|.
T Consensus       384 l~~~~~~~  391 (426)
T TIGR00563       384 LQEHPDFP  391 (426)
T ss_pred             HHhCCCCe
Confidence            7765 354

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=98.66  E-value=4.5e-07  Score=81.53  Aligned_cols=98  Identities=16%  Similarity=0.210  Sum_probs=75.3

Q ss_pred             CCCEEEEEcCcccHHHHHhc----cceEEEeccCC---------------------CCcEEEccCCC------CCCCCCC
Q 022592          141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVSN---------------------DPSVIACDMSN------TPLNSSS  189 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~~---------------------~~~~~~~d~~~------lp~~~~~  189 (294)
                      ++..++|+|||-|..+.-.-    ..++|+||+..                     .+.|+.+|...      +++++.+
T Consensus       117 ~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~  196 (389)
T KOG1975|consen  117 RGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPR  196 (389)
T ss_pred             cccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCC
Confidence            56789999999998665442    48999999972                     24688888754      4455666


Q ss_pred             ccEEEEcccccC-C----CHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHC
Q 022592          190 VDVAVFCLSLMG-I----NFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDL  249 (294)
Q Consensus       190 fD~Vi~~~~l~~-~----~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~  249 (294)
                      ||+|-|.+++|+ +    ..+.+|+.+.++|+|||+++-+-           .+.+.+..-|+..
T Consensus       197 fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTi-----------Pdsd~Ii~rlr~~  250 (389)
T KOG1975|consen  197 FDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTI-----------PDSDVIIKRLRAG  250 (389)
T ss_pred             cceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEec-----------CcHHHHHHHHHhc
Confidence            999999999997 2    35678999999999999998863           2456677777765

>PRK00811 spermidine synthase; Provisional

Probab=98.63  E-value=1.1e-07  Score=86.16  Aligned_cols=84  Identities=15%  Similarity=0.141  Sum_probs=63.3

Q ss_pred             CCCEEEEEcCcccHHHHHhc-----cceEEEeccC--------------------CCCcEEEccCCC-CCCCCCCccEEE
Q 022592          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS--------------------NDPSVIACDMSN-TPLNSSSVDVAV  194 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~--------------------~~~~~~~~d~~~-lp~~~~~fD~Vi  194 (294)
                      ...+||+||||+|..+..+.     .+|+++|+++                    +++.++.+|+.. +....++||+|+
T Consensus        76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi  155 (283)
T PRK00811         76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVII  155 (283)
T ss_pred             CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEE
Confidence            44689999999999988775     3789999987                    245677888755 233467899999


Q ss_pred             EcccccCC-----CHHHHHHHHHHhcCcCcEEEEE
Q 022592          195 FCLSLMGI-----NFPNYLQEAQRVLKPSGWLLIA  224 (294)
Q Consensus       195 ~~~~l~~~-----~~~~~l~el~r~LkpgG~l~i~  224 (294)
                      +...-.+.     -...+++.+.++|+|||.+++-
T Consensus       156 ~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~  190 (283)
T PRK00811        156 VDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ  190 (283)
T ss_pred             ECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence            86543331     1257889999999999998873

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.60  E-value=1.7e-06  Score=71.87  Aligned_cols=120  Identities=17%  Similarity=0.324  Sum_probs=88.1

Q ss_pred             CCEEEEEcCcccHHHHHhcc------ceEEEeccC--------------CCCcEEEccCCCCCCCCCCccEEEEcccccC
Q 022592          142 SLVIADFGCGDARLAKSVKN------KVFSFDLVS--------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMG  201 (294)
Q Consensus       142 ~~~VLDiGcG~G~~~~~l~~------~v~gvD~s~--------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~  201 (294)
                      ...+||||||+|..+..|+.      .+.++|+++              ..+..+++|+...- ..++.|+++++....-
T Consensus        44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l-~~~~VDvLvfNPPYVp  122 (209)
T KOG3191|consen   44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGL-RNESVDVLVFNPPYVP  122 (209)
T ss_pred             ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhh-ccCCccEEEECCCcCc
Confidence            35799999999998888862      467899998              24567888876532 2388999998766543


Q ss_pred             C------------------C----HHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEE---E
Q 022592          202 I------------------N----FPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVS---K  256 (294)
Q Consensus       202 ~------------------~----~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~---~  256 (294)
                      .                  +    .+.++..+-.+|.|.|++++..+..+.        ++++.++++..||....   .
T Consensus       123 t~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~--------p~ei~k~l~~~g~~~~~~~~R  194 (209)
T KOG3191|consen  123 TSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANK--------PKEILKILEKKGYGVRIAMQR  194 (209)
T ss_pred             CCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcC--------HHHHHHHHhhcccceeEEEEE
Confidence            1                  1    235667777889999999998766544        48899999999997765   3


Q ss_pred             eccCCeEEEEEEEE
Q 022592          257 DFSNKMFIMFYFKK  270 (294)
Q Consensus       257 ~~~~~~f~~i~~~k  270 (294)
                      .....+.+++.|.+
T Consensus       195 k~~~E~l~ilkf~r  208 (209)
T KOG3191|consen  195 KAGGETLSILKFTR  208 (209)
T ss_pred             ecCCceEEEEEEEe
Confidence            45666777777754

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=98.60  E-value=9e-08  Score=81.97  Aligned_cols=82  Identities=22%  Similarity=0.336  Sum_probs=62.5

Q ss_pred             EEEEEcCcccHHHHHhc-----cceEEEeccC---------------CCCcEEEccCCC-CC--CCCCCccEEEEccccc
Q 022592          144 VIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSN-TP--LNSSSVDVAVFCLSLM  200 (294)
Q Consensus       144 ~VLDiGcG~G~~~~~l~-----~~v~gvD~s~---------------~~~~~~~~d~~~-lp--~~~~~fD~Vi~~~~l~  200 (294)
                      .+||||||.|.++..++     ..++|+|+..               .|+.++.+|+.. ++  ++++++|.|+..+.=-
T Consensus        20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPDP   99 (195)
T PF02390_consen   20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPDP   99 (195)
T ss_dssp             EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES---
T ss_pred             eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCCC
Confidence            89999999999999887     3799999987               588999999877 22  5578999998776654


Q ss_pred             CC---------CHHHHHHHHHHhcCcCcEEEEEe
Q 022592          201 GI---------NFPNYLQEAQRVLKPSGWLLIAE  225 (294)
Q Consensus       201 ~~---------~~~~~l~el~r~LkpgG~l~i~e  225 (294)
                      |.         --..++..+.++|+|||.|.+..
T Consensus       100 WpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T  133 (195)
T PF02390_consen  100 WPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT  133 (195)
T ss_dssp             --SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence            42         13589999999999999999864

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>PRK01581 speE spermidine synthase; Validated

Probab=98.59  E-value=3.6e-07  Score=84.62  Aligned_cols=126  Identities=16%  Similarity=0.083  Sum_probs=81.6

Q ss_pred             CCCEEEEEcCcccHHHHHhc-----cceEEEeccC----------------------CCCcEEEccCCC-CCCCCCCccE
Q 022592          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS----------------------NDPSVIACDMSN-TPLNSSSVDV  192 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~----------------------~~~~~~~~d~~~-lp~~~~~fD~  192 (294)
                      ...+||+||||+|..+..+.     .+|++||+++                      +++.++.+|+.. ++...+.||+
T Consensus       150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDV  229 (374)
T PRK01581        150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDV  229 (374)
T ss_pred             CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccE
Confidence            34599999999999877665     3789999987                      244556666654 3334568999


Q ss_pred             EEEcccccC------CCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEEec---c-CCe
Q 022592          193 AVFCLSLMG------INFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSKDF---S-NKM  262 (294)
Q Consensus       193 Vi~~~~l~~------~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~---~-~~~  262 (294)
                      |++...-..      .--..+++.+.+.|+|||++++..-.....    ......+.+.++++||.+.....   . ...
T Consensus       230 IIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~----~~~~~~i~~tL~~af~~v~~y~t~vPsyg~~  305 (374)
T PRK01581        230 IIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPADA----PLVYWSIGNTIEHAGLTVKSYHTIVPSFGTD  305 (374)
T ss_pred             EEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChhhh----HHHHHHHHHHHHHhCCceEEEEEecCCCCCc
Confidence            998743211      112578999999999999988753111111    00113467889999998776221   1 122


Q ss_pred             EEEEEEEE
Q 022592          263 FIMFYFKK  270 (294)
Q Consensus       263 f~~i~~~k  270 (294)
                      |.+.++.+
T Consensus       306 WgF~~as~  313 (374)
T PRK01581        306 WGFHIAAN  313 (374)
T ss_pred             eEEEEEeC
Confidence            55666655

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=98.59  E-value=4.3e-07  Score=82.82  Aligned_cols=125  Identities=18%  Similarity=0.240  Sum_probs=91.7

Q ss_pred             CEEEEEcCcccHHHHHhc---cceEEEeccC-----------CCCcEEEccCCCCCCCCCCccEEEEcccccCC---CHH
Q 022592          143 LVIADFGCGDARLAKSVK---NKVFSFDLVS-----------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGI---NFP  205 (294)
Q Consensus       143 ~~VLDiGcG~G~~~~~l~---~~v~gvD~s~-----------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~---~~~  205 (294)
                      ...+|+|.|.|..+..+.   ..+-++++..           +.+..+.+|...- .|.  -|+|++.++|||.   +..
T Consensus       179 ~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~-~P~--~daI~mkWiLhdwtDedcv  255 (342)
T KOG3178|consen  179 NVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLAPGVEHVAGDMFQD-TPK--GDAIWMKWILHDWTDEDCV  255 (342)
T ss_pred             ceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhcCCcceeccccccc-CCC--cCeEEEEeecccCChHHHH
Confidence            578999999999988776   3455555433           2356677777654 333  3799999999983   677


Q ss_pred             HHHHHHHHhcCcCcEEEEEeec-CC---CCCCCCC------------------CCHHHHHHHHHHCCCeEEEEeccCCeE
Q 022592          206 NYLQEAQRVLKPSGWLLIAEVK-SR---FDPNTGG------------------ADPNKFSKAVCDLGFAPVSKDFSNKMF  263 (294)
Q Consensus       206 ~~l~el~r~LkpgG~l~i~e~~-~~---~~~~~~~------------------~~~~~~~~~l~~~Gf~~~~~~~~~~~f  263 (294)
                      ++|+.++..|+|||.+++.|.. +.   ++.....                  .+..++..++.++||.+...-.....+
T Consensus       256 kiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gkert~~e~q~l~~~~gF~~~~~~~~~~~~  335 (342)
T KOG3178|consen  256 KILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKERTLKEFQALLPEEGFPVCMVALTAYSY  335 (342)
T ss_pred             HHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHHHhccceeccHHHHHhcchhhcCceeEEEeccCcc
Confidence            9999999999999999999852 21   1110111                  478899999999999998877777777


Q ss_pred             EEEEEEE
Q 022592          264 IMFYFKK  270 (294)
Q Consensus       264 ~~i~~~k  270 (294)
                      .+|.+.|
T Consensus       336 ~~Ie~~k  342 (342)
T KOG3178|consen  336 SVIEFHK  342 (342)
T ss_pred             chheeCC
Confidence            7776654

>PLN02672 methionine S-methyltransferase

Probab=98.57  E-value=6.3e-07  Score=93.36  Aligned_cols=122  Identities=19%  Similarity=0.289  Sum_probs=82.8

Q ss_pred             CcHHHHHHHHhhccC----CCCEEEEEcCcccHHHHHhc-----cceEEEeccC------------C-------------
Q 022592          126 ELPVNIIVKWLKDHS----PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS------------N-------------  171 (294)
Q Consensus       126 ~~~~~~~~~~l~~~~----~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~------------~-------------  171 (294)
                      +...+.+++.+...+    .+.+|||+|||+|.++..++     ..|+|+|+|+            .             
T Consensus        99 RpeTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~  178 (1082)
T PLN02672         99 EDWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGE  178 (1082)
T ss_pred             chhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccc
Confidence            333444555443321    23589999999999998876     3799999997            1             


Q ss_pred             ------CCcEEEccCCCCCCC-CCCccEEEEcccccC-----------------------------------CC----HH
Q 022592          172 ------DPSVIACDMSNTPLN-SSSVDVAVFCLSLMG-----------------------------------IN----FP  205 (294)
Q Consensus       172 ------~~~~~~~d~~~lp~~-~~~fD~Vi~~~~l~~-----------------------------------~~----~~  205 (294)
                            ++.++.+|+...... ...||+||++-...-                                   .|    ..
T Consensus       179 ~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr  258 (1082)
T PLN02672        179 GKTLLDRVEFYESDLLGYCRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIA  258 (1082)
T ss_pred             cccccccEEEEECchhhhccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHH
Confidence                  257788888653321 236999998755310                                   00    14


Q ss_pred             HHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHH-HHHHHCCCeEEEE
Q 022592          206 NYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFS-KAVCDLGFAPVSK  256 (294)
Q Consensus       206 ~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~-~~l~~~Gf~~~~~  256 (294)
                      .++.++.++|+|||.+++ |+....        .+.+. .++++.||..+.+
T Consensus       259 ~i~~~a~~~L~pgG~l~l-EiG~~q--------~~~v~~~l~~~~gf~~~~~  301 (1082)
T PLN02672        259 RAVEEGISVIKPMGIMIF-NMGGRP--------GQAVCERLFERRGFRITKL  301 (1082)
T ss_pred             HHHHHHHHhccCCCEEEE-EECccH--------HHHHHHHHHHHCCCCeeEE
Confidence            677888899999998876 554322        36777 6999999988763

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=98.56  E-value=6.9e-08  Score=87.90  Aligned_cols=83  Identities=22%  Similarity=0.250  Sum_probs=67.3

Q ss_pred             CCCEEEEEcCcccHHHHHhc----cceEEEeccC---------------CCCcEEEccCCCCCCCCCCccEEEEcccccC
Q 022592          141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMG  201 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~---------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~  201 (294)
                      .+..|||||||+|.++...+    .+|+|||.|.               .-++++.+.++++.+|.+++|+|++-+.-++
T Consensus        60 ~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy~  139 (346)
T KOG1499|consen   60 KDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGYF  139 (346)
T ss_pred             CCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhhHH
Confidence            56799999999999988776    4999999987               3467888888887777789999998766554


Q ss_pred             ----CCHHHHHHHHHHhcCcCcEEEE
Q 022592          202 ----INFPNYLQEAQRVLKPSGWLLI  223 (294)
Q Consensus       202 ----~~~~~~l~el~r~LkpgG~l~i  223 (294)
                          .-...+|-.--+.|+|||.++=
T Consensus       140 Ll~EsMldsVl~ARdkwL~~~G~i~P  165 (346)
T KOG1499|consen  140 LLYESMLDSVLYARDKWLKEGGLIYP  165 (346)
T ss_pred             HHHhhhhhhhhhhhhhccCCCceEcc
Confidence                2456777777799999998765

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.55  E-value=3.5e-07  Score=80.02  Aligned_cols=121  Identities=17%  Similarity=0.230  Sum_probs=74.9

Q ss_pred             HHHHHHhhccCCCCEEEEEcCcccHHHHHhc----cceEEEeccCC--------CCc---EEEccCCCCC-----CCCCC
Q 022592          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVSN--------DPS---VIACDMSNTP-----LNSSS  189 (294)
Q Consensus       130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~~--------~~~---~~~~d~~~lp-----~~~~~  189 (294)
                      ..++..+.....+..|||+|||+|.++..++    ..|+|+|+++.        +..   +...|+..+.     ..-..
T Consensus        64 ~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~~~  143 (228)
T TIGR00478        64 KEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDFAT  143 (228)
T ss_pred             HHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCcee
Confidence            3345554433366789999999999998885    47999999982        221   3334554322     11235


Q ss_pred             ccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEeecCCCCCC-----CCC---------CCHHHHHHHHHHCCCeEEE
Q 022592          190 VDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPN-----TGG---------ADPNKFSKAVCDLGFAPVS  255 (294)
Q Consensus       190 fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~-----~~~---------~~~~~~~~~l~~~Gf~~~~  255 (294)
                      ||+++++..       ..+..+.++|+| |.+++. +.+.|.-.     ..+         .....+...+.+.||.+..
T Consensus       144 ~DvsfiS~~-------~~l~~i~~~l~~-~~~~~L-~KPqFE~~~~~~~~~giv~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (228)
T TIGR00478       144 FDVSFISLI-------SILPELDLLLNP-NDLTLL-FKPQFEAGREKKNKKGVVRDKEAIALALHKVIDKGESPDFQEKK  214 (228)
T ss_pred             eeEEEeehH-------hHHHHHHHHhCc-CeEEEE-cChHhhhcHhhcCcCCeecCHHHHHHHHHHHHHHHHcCCCeEee
Confidence            676666544       368889999999 776664 23333211     111         2345666777888998877


Q ss_pred             Eecc
Q 022592          256 KDFS  259 (294)
Q Consensus       256 ~~~~  259 (294)
                      ...+
T Consensus       215 ~~~s  218 (228)
T TIGR00478       215 IIFS  218 (228)
T ss_pred             EEEC
Confidence            5544

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=98.55  E-value=1.7e-07  Score=82.61  Aligned_cols=94  Identities=11%  Similarity=0.141  Sum_probs=68.3

Q ss_pred             HHHHHHhhccCCCCEEEEEcCcccHHHHHhc------cceEEEeccC----------------CCCcEEEccCCCC-C--
Q 022592          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----------------NDPSVIACDMSNT-P--  184 (294)
Q Consensus       130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~----------------~~~~~~~~d~~~l-p--  184 (294)
                      ..++..+....+..+|||||||+|..+..++      .+|+++|+++                +++.++.+|+.+. +  
T Consensus        57 g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l  136 (234)
T PLN02781         57 GLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQL  136 (234)
T ss_pred             HHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHH
Confidence            3455555554456799999999998666554      3899999997                3567888888653 2  


Q ss_pred             ---CCCCCccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEe
Q 022592          185 ---LNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAE  225 (294)
Q Consensus       185 ---~~~~~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e  225 (294)
                         .+.++||+|++...  ......++..+.++|+|||.+++-.
T Consensus       137 ~~~~~~~~fD~VfiDa~--k~~y~~~~~~~~~ll~~GG~ii~dn  178 (234)
T PLN02781        137 LNNDPKPEFDFAFVDAD--KPNYVHFHEQLLKLVKVGGIIAFDN  178 (234)
T ss_pred             HhCCCCCCCCEEEECCC--HHHHHHHHHHHHHhcCCCeEEEEEc
Confidence               12468999987532  1345688999999999999988854

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=98.53  E-value=7.1e-07  Score=78.16  Aligned_cols=112  Identities=19%  Similarity=0.257  Sum_probs=84.5

Q ss_pred             HHHHHHhhccCCCCEEEEEcCcccHHHHHhc------cceEEEeccC----------------CCCcEEEccCCCCCCCC
Q 022592          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----------------NDPSVIACDMSNTPLNS  187 (294)
Q Consensus       130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~----------------~~~~~~~~d~~~lp~~~  187 (294)
                      ..++..+.-. |+.+|||.|.|+|.++.+|+      ++|+.+|+-+                +++.+..+|+.+.-+++
T Consensus        84 ~~I~~~~gi~-pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~  162 (256)
T COG2519          84 GYIVARLGIS-PGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEE  162 (256)
T ss_pred             HHHHHHcCCC-CCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccccc
Confidence            3455555554 88999999999999999887      4899999876                34777788888866655


Q ss_pred             CCccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEE
Q 022592          188 SSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVS  255 (294)
Q Consensus       188 ~~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~  255 (294)
                       .||+|+..    -.+|-.++..+..+|+|||.+++...  .+.      ........|++.||...+
T Consensus       163 -~vDav~LD----mp~PW~~le~~~~~Lkpgg~~~~y~P--~ve------Qv~kt~~~l~~~g~~~ie  217 (256)
T COG2519         163 -DVDAVFLD----LPDPWNVLEHVSDALKPGGVVVVYSP--TVE------QVEKTVEALRERGFVDIE  217 (256)
T ss_pred             -ccCEEEEc----CCChHHHHHHHHHHhCCCcEEEEEcC--CHH------HHHHHHHHHHhcCccchh
Confidence             79998854    34889999999999999999999642  111      124445667788886655

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=98.53  E-value=4.5e-07  Score=81.96  Aligned_cols=83  Identities=14%  Similarity=0.171  Sum_probs=63.2

Q ss_pred             CCEEEEEcCcccH--HH--HHhc---------cceEEEeccC--------------------------------------
Q 022592          142 SLVIADFGCGDAR--LA--KSVK---------NKVFSFDLVS--------------------------------------  170 (294)
Q Consensus       142 ~~~VLDiGcG~G~--~~--~~l~---------~~v~gvD~s~--------------------------------------  170 (294)
                      ..+|+..||++|.  ++  ..+.         -+|+|+|+|.                                      
T Consensus       116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~  195 (287)
T PRK10611        116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL  195 (287)
T ss_pred             CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence            4699999999996  22  2221         1589999997                                      


Q ss_pred             --------CCCcEEEccCCCCCCC-CCCccEEEEcccccCCC---HHHHHHHHHHhcCcCcEEEEE
Q 022592          171 --------NDPSVIACDMSNTPLN-SSSVDVAVFCLSLMGIN---FPNYLQEAQRVLKPSGWLLIA  224 (294)
Q Consensus       171 --------~~~~~~~~d~~~lp~~-~~~fD~Vi~~~~l~~~~---~~~~l~el~r~LkpgG~l~i~  224 (294)
                              ..+.|...|+.+.+++ .+.||+|+|..+|.|++   ...+++.+.+.|+|||+|++.
T Consensus       196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG  261 (287)
T PRK10611        196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAG  261 (287)
T ss_pred             EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence                    1234566677664433 57899999999999864   568999999999999998885

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.53  E-value=5e-07  Score=86.61  Aligned_cols=116  Identities=26%  Similarity=0.383  Sum_probs=76.3

Q ss_pred             cHHHHHHHhcChhhHHHHHHhHHhhhccCCCcHHHHHHHHhhccC---CCCEEEEEcCcccHHHHHhc---------cce
Q 022592           96 GKEALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIVKWLKDHS---PSLVIADFGCGDARLAKSVK---------NKV  163 (294)
Q Consensus        96 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~VLDiGcG~G~~~~~l~---------~~v  163 (294)
                      .....+.|..++-.|+.|.+....           .+.+......   .+..|||||||+|.++...+         .+|
T Consensus       149 ~s~tYe~fE~D~vKY~~Ye~AI~~-----------al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~V  217 (448)
T PF05185_consen  149 ESQTYEVFEKDPVKYDQYERAIEE-----------ALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKV  217 (448)
T ss_dssp             -HHHHHHHCC-HHHHHHHHHHHHH-----------HHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEE
T ss_pred             ccccHhhHhcCHHHHHHHHHHHHH-----------HHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEE
Confidence            344567888888888888764322           2233333221   24689999999999875432         389


Q ss_pred             EEEeccC----------------CCCcEEEccCCCCCCCCCCccEEEEcccccC---CCHHHHHHHHHHhcCcCcEEEE
Q 022592          164 FSFDLVS----------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMG---INFPNYLQEAQRVLKPSGWLLI  223 (294)
Q Consensus       164 ~gvD~s~----------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~---~~~~~~l~el~r~LkpgG~l~i  223 (294)
                      ++|+-++                +.++++.+|++++..+. .+|+||+-..=.+   .-..+.|..+.|.|+|||+++=
T Consensus       218 yAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpe-kvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~IP  295 (448)
T PF05185_consen  218 YAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPE-KVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMIP  295 (448)
T ss_dssp             EEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS--EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEES
T ss_pred             EEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCC-ceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEeC
Confidence            9999887                47889999999988754 7999997433222   2345788999999999987764

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.51  E-value=4.6e-07  Score=91.81  Aligned_cols=108  Identities=13%  Similarity=0.161  Sum_probs=77.3

Q ss_pred             CCCEEEEEcCcccHHHHHhc----cceEEEeccC-----------------CCCcEEEccCCCCC-CCCCCccEEEEccc
Q 022592          141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVS-----------------NDPSVIACDMSNTP-LNSSSVDVAVFCLS  198 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~-----------------~~~~~~~~d~~~lp-~~~~~fD~Vi~~~~  198 (294)
                      .+.+|||+|||+|.++..++    ..|+++|+|+                 .++.++.+|+.+.. -..++||+|++..-
T Consensus       538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP  617 (702)
T PRK11783        538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPP  617 (702)
T ss_pred             CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCC
Confidence            46799999999999998887    2699999997                 14678888876521 11468999998643


Q ss_pred             ccC------------CCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEEe
Q 022592          199 LMG------------INFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSKD  257 (294)
Q Consensus       199 l~~------------~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~  257 (294)
                      ...            .+...++..+.++|+|||.+++..-...+       +  ...+++.++|+.+..+.
T Consensus       618 ~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~-------~--~~~~~~~~~g~~~~~i~  679 (702)
T PRK11783        618 TFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGF-------K--MDEEGLAKLGLKAEEIT  679 (702)
T ss_pred             CCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccC-------C--hhHHHHHhCCCeEEEEe
Confidence            211            13457888899999999999886422211       1  22677888998876643

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=98.51  E-value=4.8e-07  Score=77.67  Aligned_cols=93  Identities=9%  Similarity=0.093  Sum_probs=63.6

Q ss_pred             HHHHhhccCCCCEEEEEcCcccHHHHH-hc---cceEEEeccC---------------CCCcEEEccCCC-CCCCCCCcc
Q 022592          132 IVKWLKDHSPSLVIADFGCGDARLAKS-VK---NKVFSFDLVS---------------NDPSVIACDMSN-TPLNSSSVD  191 (294)
Q Consensus       132 ~~~~l~~~~~~~~VLDiGcG~G~~~~~-l~---~~v~gvD~s~---------------~~~~~~~~d~~~-lp~~~~~fD  191 (294)
                      ++..+.....+.+|||+|||+|.++.. ++   ..|+++|.++               .++.++.+|+.. ++....+||
T Consensus        44 l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fD  123 (199)
T PRK10909         44 LFNWLAPVIVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHN  123 (199)
T ss_pred             HHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCce
Confidence            455554323567999999999999875 33   4899999987               246788888765 222245699


Q ss_pred             EEEEcccccCCCHHHHHHHHHH--hcCcCcEEEEE
Q 022592          192 VAVFCLSLMGINFPNYLQEAQR--VLKPSGWLLIA  224 (294)
Q Consensus       192 ~Vi~~~~l~~~~~~~~l~el~r--~LkpgG~l~i~  224 (294)
                      +|++...+..--...++..+..  +|.|+|++++.
T Consensus       124 lV~~DPPy~~g~~~~~l~~l~~~~~l~~~~iv~ve  158 (199)
T PRK10909        124 VVFVDPPFRKGLLEETINLLEDNGWLADEALIYVE  158 (199)
T ss_pred             EEEECCCCCCChHHHHHHHHHHCCCcCCCcEEEEE
Confidence            9999877543233445555554  47898877775

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=98.49  E-value=3.5e-06  Score=75.16  Aligned_cols=139  Identities=14%  Similarity=0.204  Sum_probs=95.9

Q ss_pred             HHHHhhccCCCCEEEEEcCcccHHHHHhc-------cceEEEeccCC---------------CC-cEEEccCCCC---CC
Q 022592          132 IVKWLKDHSPSLVIADFGCGDARLAKSVK-------NKVFSFDLVSN---------------DP-SVIACDMSNT---PL  185 (294)
Q Consensus       132 ~~~~l~~~~~~~~VLDiGcG~G~~~~~l~-------~~v~gvD~s~~---------------~~-~~~~~d~~~l---p~  185 (294)
                      .+..|.......+||||.||.|.+.....       ..+...|.|+.               ++ .|..+|+.+.   .-
T Consensus       126 ai~~L~~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~  205 (311)
T PF12147_consen  126 AIARLREQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAA  205 (311)
T ss_pred             HHHHHHhcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhc
Confidence            33444433355699999999999877664       26788899982               33 7888888762   21


Q ss_pred             CCCCccEEEEcccccCC-C---HHHHHHHHHHhcCcCcEEEEEe--ecCCC-------CCCCC-------CCCHHHHHHH
Q 022592          186 NSSSVDVAVFCLSLMGI-N---FPNYLQEAQRVLKPSGWLLIAE--VKSRF-------DPNTG-------GADPNKFSKA  245 (294)
Q Consensus       186 ~~~~fD~Vi~~~~l~~~-~---~~~~l~el~r~LkpgG~l~i~e--~~~~~-------~~~~~-------~~~~~~~~~~  245 (294)
                      -+...++++.+..++.+ |   ....+..+.+++.|||+|+.+.  |++..       ..+..       ..+..++..+
T Consensus       206 l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRrRsq~EmD~L  285 (311)
T PF12147_consen  206 LDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRRRSQAEMDQL  285 (311)
T ss_pred             cCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEecCHHHHHHH
Confidence            13457999999999875 3   3457889999999999999975  44321       11111       1488999999


Q ss_pred             HHHCCCeEEEEe-ccCCeEEEEEEEE
Q 022592          246 VCDLGFAPVSKD-FSNKMFIMFYFKK  270 (294)
Q Consensus       246 l~~~Gf~~~~~~-~~~~~f~~i~~~k  270 (294)
                      ++.+||+.+.+. ....-|++-.++|
T Consensus       286 v~~aGF~K~~q~ID~~GIFTVSlA~r  311 (311)
T PF12147_consen  286 VEAAGFEKIDQRIDEWGIFTVSLARR  311 (311)
T ss_pred             HHHcCCchhhheeccCCceEEEeecC
Confidence            999999877632 2344566666543

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=98.48  E-value=1.9e-06  Score=79.29  Aligned_cols=115  Identities=10%  Similarity=0.111  Sum_probs=72.7

Q ss_pred             CCCEEEEEcCcccHHHHHhc---cceEEEeccC---------------CCCcEEEccCCCCCC-CCCCccEEEEcccccC
Q 022592          141 PSLVIADFGCGDARLAKSVK---NKVFSFDLVS---------------NDPSVIACDMSNTPL-NSSSVDVAVFCLSLMG  201 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~---------------~~~~~~~~d~~~lp~-~~~~fD~Vi~~~~l~~  201 (294)
                      ++.+|||+|||+|.++..++   ..|+|+|+++               .+++++.+|+..+.. ..+.||+|++...-. 
T Consensus       173 ~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr~-  251 (315)
T PRK03522        173 PPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPPRR-  251 (315)
T ss_pred             CCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCCCC-
Confidence            45799999999999999887   4899999997               257899999876532 235799999874421 


Q ss_pred             CCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEEe-----ccCCeEEEEEE
Q 022592          202 INFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSKD-----FSNKMFIMFYF  268 (294)
Q Consensus       202 ~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~-----~~~~~f~~i~~  268 (294)
                       .....+.++...+.|++.++++.-...+        ..++.. |  .||++....     ....|..++..
T Consensus       252 -G~~~~~~~~l~~~~~~~ivyvsc~p~t~--------~rd~~~-l--~~y~~~~~~~~DmFP~T~HvE~v~~  311 (315)
T PRK03522        252 -GIGKELCDYLSQMAPRFILYSSCNAQTM--------AKDLAH-L--PGYRIERVQLFDMFPHTAHYEVLTL  311 (315)
T ss_pred             -CccHHHHHHHHHcCCCeEEEEECCcccc--------hhHHhh-c--cCcEEEEEEEeccCCCCCeEEEEEE
Confidence             1122333334447788777775322111        123333 3  589888733     34444444443

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=98.47  E-value=7.2e-07  Score=84.36  Aligned_cols=102  Identities=18%  Similarity=0.165  Sum_probs=71.3

Q ss_pred             CCCEEEEEcCcccHHHHHhc----cceEEEeccC---------------C--CCcEEEccCCCCC--C--CCCCccEEEE
Q 022592          141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVS---------------N--DPSVIACDMSNTP--L--NSSSVDVAVF  195 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~---------------~--~~~~~~~d~~~lp--~--~~~~fD~Vi~  195 (294)
                      ++.+|||+|||+|.++..++    ..|+++|+|+               .  ++.++.+|+.+..  +  ..++||+|++
T Consensus       220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVil  299 (396)
T PRK15128        220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM  299 (396)
T ss_pred             CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEE
Confidence            56799999999999887644    3899999997               1  4568888886632  1  2458999998


Q ss_pred             cccccCC----------CHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHC
Q 022592          196 CLSLMGI----------NFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDL  249 (294)
Q Consensus       196 ~~~l~~~----------~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~  249 (294)
                      .......          +...++..+.++|+|||.|+.......       .+.+.+.+++.++
T Consensus       300 DPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~-------~~~~~f~~~v~~a  356 (396)
T PRK15128        300 DPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGL-------MTSDLFQKIIADA  356 (396)
T ss_pred             CCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCc-------CCHHHHHHHHHHH
Confidence            7554322          234556678899999999998653222       2456666655443

>PRK03612 spermidine synthase; Provisional

Probab=98.46  E-value=6.8e-07  Score=87.61  Aligned_cols=109  Identities=19%  Similarity=0.178  Sum_probs=75.9

Q ss_pred             CCCEEEEEcCcccHHHHHhc-----cceEEEeccC----------------------CCCcEEEccCCC-CCCCCCCccE
Q 022592          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS----------------------NDPSVIACDMSN-TPLNSSSVDV  192 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~----------------------~~~~~~~~d~~~-lp~~~~~fD~  192 (294)
                      ...+|||||||+|..+..+.     .+++++|+++                      ++++++.+|... +....++||+
T Consensus       297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDv  376 (521)
T PRK03612        297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDV  376 (521)
T ss_pred             CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCE
Confidence            44689999999999888765     3789999976                      245667777765 2223468999


Q ss_pred             EEEcccccCC------CHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeE
Q 022592          193 AVFCLSLMGI------NFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAP  253 (294)
Q Consensus       193 Vi~~~~l~~~------~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~  253 (294)
                      |++.......      -..++++.+.++|+|||.+++......+.    .-...++.+.+++.||.+
T Consensus       377 Ii~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~----~~~~~~i~~~l~~~gf~v  439 (521)
T PRK03612        377 IIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFA----PKAFWSIEATLEAAGLAT  439 (521)
T ss_pred             EEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccc----hHHHHHHHHHHHHcCCEE
Confidence            9998554321      12468999999999999988853221111    112356788899999933

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=98.43  E-value=3.3e-06  Score=72.94  Aligned_cols=129  Identities=18%  Similarity=0.166  Sum_probs=87.4

Q ss_pred             cHHHHHHHHhhcc--CCCCEEEEEcCcccHHHHHhc---c-ceEEEeccC-----------------CCCcEEEccCCCC
Q 022592          127 LPVNIIVKWLKDH--SPSLVIADFGCGDARLAKSVK---N-KVFSFDLVS-----------------NDPSVIACDMSNT  183 (294)
Q Consensus       127 ~~~~~~~~~l~~~--~~~~~VLDiGcG~G~~~~~l~---~-~v~gvD~s~-----------------~~~~~~~~d~~~l  183 (294)
                      +|+...+..+..-  ..+.+|||.+.|-|+.+....   + .|+.++-.+                 ..+.++.+|+.++
T Consensus       118 dP~~Dt~~Kv~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~  197 (287)
T COG2521         118 DPLEDTLAKVELVKVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEV  197 (287)
T ss_pred             CcHHHHHhhhheeccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHH
Confidence            4455555554433  247899999999999988775   2 666666544                 2567888888663


Q ss_pred             --CCCCCCccEEEEccc---ccC-CCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCC-CHHHHHHHHHHCCCeEEEE
Q 022592          184 --PLNSSSVDVAVFCLS---LMG-INFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGA-DPNKFSKAVCDLGFAPVSK  256 (294)
Q Consensus       184 --p~~~~~fD~Vi~~~~---l~~-~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~-~~~~~~~~l~~~Gf~~~~~  256 (294)
                        .|+|++||+|+....   +.. .--.++.+|++|+|+|||.++-+.=++  .....+. -...+.+.|+++||.++..
T Consensus       198 V~~~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~P--g~ryrG~d~~~gVa~RLr~vGF~~v~~  275 (287)
T COG2521         198 VKDFDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNP--GKRYRGLDLPKGVAERLRRVGFEVVKK  275 (287)
T ss_pred             HhcCCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCC--CcccccCChhHHHHHHHHhcCceeeee
Confidence              478999999986322   111 123589999999999999999864221  1111122 2367899999999998774


Q ss_pred             e
Q 022592          257 D  257 (294)
Q Consensus       257 ~  257 (294)
                      .
T Consensus       276 ~  276 (287)
T COG2521         276 V  276 (287)
T ss_pred             e
Confidence            3

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=98.43  E-value=1e-06  Score=78.00  Aligned_cols=113  Identities=19%  Similarity=0.340  Sum_probs=78.9

Q ss_pred             HHHHHhhccCCCCEEEEEcCcccHHHHHhc------cceEEEeccC----------------CCCcEEEccCCCCCCC--
Q 022592          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----------------NDPSVIACDMSNTPLN--  186 (294)
Q Consensus       131 ~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~----------------~~~~~~~~d~~~lp~~--  186 (294)
                      .++..+.-. |+.+|||.|.|+|.++..|+      ++|+.+|+.+                .++.+...|+....+.  
T Consensus        31 ~I~~~l~i~-pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~  109 (247)
T PF08704_consen   31 YILMRLDIR-PGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEE  109 (247)
T ss_dssp             HHHHHTT---TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT
T ss_pred             HHHHHcCCC-CCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccccccc
Confidence            355555554 89999999999999998887      4899999886                4678889998654442  


Q ss_pred             -CCCccEEEEcccccCCCHHHHHHHHHHhc-CcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEE
Q 022592          187 -SSSVDVAVFCLSLMGINFPNYLQEAQRVL-KPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSK  256 (294)
Q Consensus       187 -~~~fD~Vi~~~~l~~~~~~~~l~el~r~L-kpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~  256 (294)
                       +..+|.|+...    .+|-.+|..+.++| +|||.+.+..  +...      ........|++.||..+++
T Consensus       110 ~~~~~DavfLDl----p~Pw~~i~~~~~~L~~~gG~i~~fs--P~ie------Qv~~~~~~L~~~gf~~i~~  169 (247)
T PF08704_consen  110 LESDFDAVFLDL----PDPWEAIPHAKRALKKPGGRICCFS--PCIE------QVQKTVEALREHGFTDIET  169 (247)
T ss_dssp             -TTSEEEEEEES----SSGGGGHHHHHHHE-EEEEEEEEEE--SSHH------HHHHHHHHHHHTTEEEEEE
T ss_pred             ccCcccEEEEeC----CCHHHHHHHHHHHHhcCCceEEEEC--CCHH------HHHHHHHHHHHCCCeeeEE
Confidence             35799988643    47889999999999 8999999863  1111      1234457788899987763

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>TIGR00417 speE spermidine synthase

Probab=98.38  E-value=1.2e-06  Score=78.72  Aligned_cols=83  Identities=13%  Similarity=0.108  Sum_probs=59.7

Q ss_pred             CCEEEEEcCcccHHHHHhc-----cceEEEeccCC-------------------CCcEEEccCCC-CCCCCCCccEEEEc
Q 022592          142 SLVIADFGCGDARLAKSVK-----NKVFSFDLVSN-------------------DPSVIACDMSN-TPLNSSSVDVAVFC  196 (294)
Q Consensus       142 ~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~~-------------------~~~~~~~d~~~-lp~~~~~fD~Vi~~  196 (294)
                      +.+||+||||+|.++..+.     ..++++|+++.                   +++++.+|... +.-..++||+|++.
T Consensus        73 p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~D  152 (270)
T TIGR00417        73 PKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIVD  152 (270)
T ss_pred             CCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEEe
Confidence            3499999999999887764     36899998861                   34455555433 22224689999987


Q ss_pred             ccccC-C--C--HHHHHHHHHHhcCcCcEEEEE
Q 022592          197 LSLMG-I--N--FPNYLQEAQRVLKPSGWLLIA  224 (294)
Q Consensus       197 ~~l~~-~--~--~~~~l~el~r~LkpgG~l~i~  224 (294)
                      ..... .  +  ...+++.+.++|+|||.+++.
T Consensus       153 ~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~  185 (270)
T TIGR00417       153 STDPVGPAETLFTKEFYELLKKALNEDGIFVAQ  185 (270)
T ss_pred             CCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence            65322 1  1  468899999999999999985

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.38  E-value=1.3e-05  Score=68.60  Aligned_cols=107  Identities=21%  Similarity=0.304  Sum_probs=78.5

Q ss_pred             CCCCEEEEEcCcccHHHHHhc------cceEEEeccC----CCCcEEEccCCCCC--------CCCCCccEEEEccccc-
Q 022592          140 SPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----NDPSVIACDMSNTP--------LNSSSVDVAVFCLSLM-  200 (294)
Q Consensus       140 ~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~----~~~~~~~~d~~~lp--------~~~~~fD~Vi~~~~l~-  200 (294)
                      .++..|+|||+-+|.|++.++      ..|+|+|+-+    +++.++.+|+...+        +....+|+|++-.+-. 
T Consensus        44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~sD~ap~~  123 (205)
T COG0293          44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPIPGVIFLQGDITDEDTLEKLLEALGGAPVDVVLSDMAPNT  123 (205)
T ss_pred             cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccCCCceEEeeeccCccHHHHHHHHcCCCCcceEEecCCCCc
Confidence            567899999999999999886      2499999988    67899999997744        3345579999755441 


Q ss_pred             ---C-CC-------HHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEE
Q 022592          201 ---G-IN-------FPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVS  255 (294)
Q Consensus       201 ---~-~~-------~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~  255 (294)
                         + .|       ...++.-+..+|+|||.+++-.+...-        .+.+.+.+++ .|+.+.
T Consensus       124 ~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~--------~~~~l~~~~~-~F~~v~  180 (205)
T COG0293         124 SGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGED--------FEDLLKALRR-LFRKVK  180 (205)
T ss_pred             CCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCC--------HHHHHHHHHH-hhceeE
Confidence               1 12       234566677899999999998766433        3666666665 466666

>PLN02366 spermidine synthase

Probab=98.36  E-value=1.6e-06  Score=79.35  Aligned_cols=127  Identities=10%  Similarity=0.043  Sum_probs=79.4

Q ss_pred             CCCEEEEEcCcccHHHHHhc-----cceEEEeccC-------------------CCCcEEEccCCCC-C-CCCCCccEEE
Q 022592          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS-------------------NDPSVIACDMSNT-P-LNSSSVDVAV  194 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~-------------------~~~~~~~~d~~~l-p-~~~~~fD~Vi  194 (294)
                      ...+||+||||.|..+..++     .+|+.+|+.+                   +++.++.+|.... . .+.+.||+|+
T Consensus        91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi  170 (308)
T PLN02366         91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAII  170 (308)
T ss_pred             CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEE
Confidence            45689999999999988886     2678888776                   2567788886432 1 2356899999


Q ss_pred             EcccccCC-----CHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEE------eccCCeE
Q 022592          195 FCLSLMGI-----NFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSK------DFSNKMF  263 (294)
Q Consensus       195 ~~~~l~~~-----~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~------~~~~~~f  263 (294)
                      +...-.+.     --..+++.+.++|+|||.+++-. .+.+..   ......+.+.+.+.....+..      .+....+
T Consensus       171 ~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~-~s~~~~---~~~~~~i~~tl~~~F~~~v~~~~~~vPsy~~g~w  246 (308)
T PLN02366        171 VDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA-ESMWLH---MDLIEDLIAICRETFKGSVNYAWTTVPTYPSGVI  246 (308)
T ss_pred             EcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc-CCcccc---hHHHHHHHHHHHHHCCCceeEEEecCCCcCCCce
Confidence            86544321     13478999999999999987632 111111   112244556666664344432      1222446


Q ss_pred             EEEEEEEC
Q 022592          264 IMFYFKKK  271 (294)
Q Consensus       264 ~~i~~~k~  271 (294)
                      .+.++.+.
T Consensus       247 ~f~~as~~  254 (308)
T PLN02366        247 GFVLCSKE  254 (308)
T ss_pred             EEEEEECC
Confidence            66666553

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=98.36  E-value=3.8e-06  Score=80.49  Aligned_cols=107  Identities=17%  Similarity=0.257  Sum_probs=72.5

Q ss_pred             CCCEEEEEcCcccHHHHHhc---cceEEEeccC---------------CCCcEEEccCCCC----CCCCCCccEEEEccc
Q 022592          141 PSLVIADFGCGDARLAKSVK---NKVFSFDLVS---------------NDPSVIACDMSNT----PLNSSSVDVAVFCLS  198 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~---------------~~~~~~~~d~~~l----p~~~~~fD~Vi~~~~  198 (294)
                      ++.+|||+|||+|.++..++   ..|+|+|+++               .++.++.+|+...    ++.+.+||+|++...
T Consensus       292 ~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dPP  371 (431)
T TIGR00479       292 GEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLDPP  371 (431)
T ss_pred             CCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEECcC
Confidence            45699999999999999887   4899999997               3678899998652    233567999997543


Q ss_pred             ccCCCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEEec
Q 022592          199 LMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSKDF  258 (294)
Q Consensus       199 l~~~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  258 (294)
                      =.. -...+++.+.+ ++|++.++++-     ++    -+...-...|...||++..+..
T Consensus       372 r~G-~~~~~l~~l~~-l~~~~ivyvsc-----~p----~tlard~~~l~~~gy~~~~~~~  420 (431)
T TIGR00479       372 RKG-CAAEVLRTIIE-LKPERIVYVSC-----NP----ATLARDLEFLCKEGYGITWVQP  420 (431)
T ss_pred             CCC-CCHHHHHHHHh-cCCCEEEEEcC-----CH----HHHHHHHHHHHHCCeeEEEEEE
Confidence            111 12456665554 88988777742     11    1222334567788998877443

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=98.34  E-value=8.5e-06  Score=74.68  Aligned_cols=115  Identities=23%  Similarity=0.306  Sum_probs=85.3

Q ss_pred             HHHHHHHhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccCC---------------CCcEE-EccCCCCCCCCCC
Q 022592          129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVSN---------------DPSVI-ACDMSNTPLNSSS  189 (294)
Q Consensus       129 ~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~~---------------~~~~~-~~d~~~lp~~~~~  189 (294)
                      +.+++-.|....++..|||-=||||.++..+.   ..++|.|+...               ...+. .+|+..+|+++.+
T Consensus       185 lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~  264 (347)
T COG1041         185 LARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNS  264 (347)
T ss_pred             HHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCc
Confidence            44555555655678899999999999988775   59999999871               22233 3499999999989


Q ss_pred             ccEEEEcccccC------CC----HHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEE
Q 022592          190 VDVAVFCLSLMG------IN----FPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSK  256 (294)
Q Consensus       190 fD~Vi~~~~l~~------~~----~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~  256 (294)
                      +|.|++-...--      ..    ...+++.+.++|++||++++.-..             .....+...||.++..
T Consensus       265 vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~-------------~~~~~~~~~~f~v~~~  328 (347)
T COG1041         265 VDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAPR-------------DPRHELEELGFKVLGR  328 (347)
T ss_pred             cceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecCC-------------cchhhHhhcCceEEEE
Confidence            999997655432      11    468999999999999999986431             1123477889999873

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=98.33  E-value=1.2e-06  Score=75.96  Aligned_cols=112  Identities=15%  Similarity=0.270  Sum_probs=73.0

Q ss_pred             CCCEEEEEcCcccHHHHHhc-----cceEEEeccCC--------------------------------------------
Q 022592          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVSN--------------------------------------------  171 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~~--------------------------------------------  171 (294)
                      .+..+|||||.+|.++..++     ..|.|+||.+.                                            
T Consensus        58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~  137 (288)
T KOG2899|consen   58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF  137 (288)
T ss_pred             CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence            44689999999999999887     47899999861                                            


Q ss_pred             ------CCc-------EEEccCCCCCCCCCCccEEEEcccccC--CC-----HHHHHHHHHHhcCcCcEEEEEeecCC--
Q 022592          172 ------DPS-------VIACDMSNTPLNSSSVDVAVFCLSLMG--IN-----FPNYLQEAQRVLKPSGWLLIAEVKSR--  229 (294)
Q Consensus       172 ------~~~-------~~~~d~~~lp~~~~~fD~Vi~~~~l~~--~~-----~~~~l~el~r~LkpgG~l~i~e~~~~--  229 (294)
                            ++.       +...|+.  .+....||+|+|--+-.|  .+     ...+++.++++|.|||+|++- ...+  
T Consensus       138 t~~~p~n~~f~~~n~vle~~dfl--~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE-PQpWks  214 (288)
T KOG2899|consen  138 TTDFPDNVWFQKENYVLESDDFL--DMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE-PQPWKS  214 (288)
T ss_pred             cccCCcchhcccccEEEecchhh--hhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc-CCchHH
Confidence                  000       0111111  223457999887655554  22     468999999999999999984 2211  


Q ss_pred             ----------C--CCCCCCCCHHHHHHHHHHC--CCeEEE
Q 022592          230 ----------F--DPNTGGADPNKFSKAVCDL--GFAPVS  255 (294)
Q Consensus       230 ----------~--~~~~~~~~~~~~~~~l~~~--Gf~~~~  255 (294)
                                +  ......+.++.+..++.+.  ||+-++
T Consensus       215 Y~kaar~~e~~~~ny~~i~lkp~~f~~~l~q~~vgle~~e  254 (288)
T KOG2899|consen  215 YKKAARRSEKLAANYFKIFLKPEDFEDWLNQIVVGLESVE  254 (288)
T ss_pred             HHHHHHHHHHhhcCccceecCHHHHHhhhhhhhhheeeec
Confidence                      0  1111125778888888776  565544

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=98.32  E-value=4.9e-06  Score=74.38  Aligned_cols=83  Identities=14%  Similarity=0.178  Sum_probs=64.4

Q ss_pred             CCEEEEEcCcccH--HHHHh--c----------cceEEEeccC-------------------------------------
Q 022592          142 SLVIADFGCGDAR--LAKSV--K----------NKVFSFDLVS-------------------------------------  170 (294)
Q Consensus       142 ~~~VLDiGcG~G~--~~~~l--~----------~~v~gvD~s~-------------------------------------  170 (294)
                      ..+|+-+||+||.  ++.++  .          -.++|.|++.                                     
T Consensus        97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y  176 (268)
T COG1352          97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY  176 (268)
T ss_pred             ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence            5689999999996  33322  1          1678999986                                     


Q ss_pred             -------CCCcEEEccCCCCCCCCCCccEEEEcccccCCC---HHHHHHHHHHhcCcCcEEEEE
Q 022592          171 -------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGIN---FPNYLQEAQRVLKPSGWLLIA  224 (294)
Q Consensus       171 -------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~~---~~~~l~el~r~LkpgG~l~i~  224 (294)
                             ..+.|...|+..-++..+.||+|+|..||.++|   ...++..++..|+|||.|++.
T Consensus       177 ~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG  240 (268)
T COG1352         177 RVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLG  240 (268)
T ss_pred             EEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEc
Confidence                   144566777766553456799999999999875   458999999999999999996

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.29  E-value=1.7e-05  Score=66.62  Aligned_cols=101  Identities=17%  Similarity=0.233  Sum_probs=72.3

Q ss_pred             CCCCEEEEEcCcccHHHHHhc----cceEEEeccC--------------CCCcEEEccCCCCCCCCCCccEEEEcccccC
Q 022592          140 SPSLVIADFGCGDARLAKSVK----NKVFSFDLVS--------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMG  201 (294)
Q Consensus       140 ~~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~--------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~  201 (294)
                      ..+..|+|+|||||.++...+    ..|+|+|+.+              .++.++++|+....   ..+|.|+++..+--
T Consensus        44 l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~---~~~dtvimNPPFG~  120 (198)
T COG2263          44 LEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFR---GKFDTVIMNPPFGS  120 (198)
T ss_pred             cCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcC---CccceEEECCCCcc
Confidence            356689999999999887665    5899999987              26789999998875   45889898877653


Q ss_pred             ----CCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEE
Q 022592          202 ----INFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSK  256 (294)
Q Consensus       202 ----~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~  256 (294)
                          .| ..++..+.+..     =+++.++..-       +.+-+.+....+|+.++..
T Consensus       121 ~~rhaD-r~Fl~~Ale~s-----~vVYsiH~a~-------~~~f~~~~~~~~G~~v~~~  166 (198)
T COG2263         121 QRRHAD-RPFLLKALEIS-----DVVYSIHKAG-------SRDFVEKFAADLGGTVTHI  166 (198)
T ss_pred             ccccCC-HHHHHHHHHhh-----heEEEeeccc-------cHHHHHHHHHhcCCeEEEE
Confidence                23 34555555543     1333333322       5678889999999988874

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=98.26  E-value=1.7e-05  Score=74.65  Aligned_cols=83  Identities=16%  Similarity=0.173  Sum_probs=59.4

Q ss_pred             CCCEEEEEcCcccHHHHHhc---cceEEEeccC---------------CCCcEEEccCCCCCC-CCCCccEEEEcccccC
Q 022592          141 PSLVIADFGCGDARLAKSVK---NKVFSFDLVS---------------NDPSVIACDMSNTPL-NSSSVDVAVFCLSLMG  201 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~---------------~~~~~~~~d~~~lp~-~~~~fD~Vi~~~~l~~  201 (294)
                      ++.+|||+|||+|.++..++   ..|+|+|+++               .++.++.+|+..... ...+||+|++...-..
T Consensus       233 ~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~G  312 (374)
T TIGR02085       233 PVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPRRG  312 (374)
T ss_pred             CCCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCCCC
Confidence            45689999999999998887   4799999997               256788888865321 1245999998755332


Q ss_pred             CCHHHHHHHHHHhcCcCcEEEEEe
Q 022592          202 INFPNYLQEAQRVLKPSGWLLIAE  225 (294)
Q Consensus       202 ~~~~~~l~el~r~LkpgG~l~i~e  225 (294)
                      .+ ..++..+. .++|++.++++-
T Consensus       313 ~~-~~~l~~l~-~~~p~~ivyvsc  334 (374)
T TIGR02085       313 IG-KELCDYLS-QMAPKFILYSSC  334 (374)
T ss_pred             Cc-HHHHHHHH-hcCCCeEEEEEe
Confidence            22 34555554 479998888863

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=98.26  E-value=9.2e-07  Score=82.37  Aligned_cols=89  Identities=21%  Similarity=0.335  Sum_probs=77.2

Q ss_pred             CCCCEEEEEcCcccHHHHHhc----cceEEEeccC----------------CCCcEEEccCCCCCCCCCCccEEEEcccc
Q 022592          140 SPSLVIADFGCGDARLAKSVK----NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSVDVAVFCLSL  199 (294)
Q Consensus       140 ~~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~----------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l  199 (294)
                      .++..++|+|||.|....++.    ..++|+|.++                ....++.+|+...|++++.||.+.+..+.
T Consensus       109 ~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~  188 (364)
T KOG1269|consen  109 FPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVV  188 (364)
T ss_pred             cccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeec
Confidence            456689999999999888776    4889999887                23456889999999999999999999999


Q ss_pred             cC-CCHHHHHHHHHHhcCcCcEEEEEeecC
Q 022592          200 MG-INFPNYLQEAQRVLKPSGWLLIAEVKS  228 (294)
Q Consensus       200 ~~-~~~~~~l~el~r~LkpgG~l~i~e~~~  228 (294)
                      .| .+...++.|++|+++|||.+++.++..
T Consensus       189 ~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i~  218 (364)
T KOG1269|consen  189 CHAPDLEKVYAEIYRVLKPGGLFIVKEWIK  218 (364)
T ss_pred             ccCCcHHHHHHHHhcccCCCceEEeHHHHH
Confidence            99 589999999999999999999986543

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=98.22  E-value=1e-05  Score=71.53  Aligned_cols=85  Identities=24%  Similarity=0.321  Sum_probs=60.7

Q ss_pred             CCCEEEEEcCcccHHHHHhc-----cceEEEeccC----------------CCCcEEEccCC-----CCCCCCCCccEEE
Q 022592          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS----------------NDPSVIACDMS-----NTPLNSSSVDVAV  194 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~----------------~~~~~~~~d~~-----~lp~~~~~fD~Vi  194 (294)
                      .+..|||+|||+|..+..++     ..|+++|.|+                .++.++..+++     ..+...+.+|+++
T Consensus       148 ~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllv  227 (328)
T KOG2904|consen  148 KHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLV  227 (328)
T ss_pred             ccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEe
Confidence            34579999999999988876     3899999998                23444433332     2445678999999


Q ss_pred             EcccccCC-C--------------------------HHHHHHHHHHhcCcCcEEEEEe
Q 022592          195 FCLSLMGI-N--------------------------FPNYLQEAQRVLKPSGWLLIAE  225 (294)
Q Consensus       195 ~~~~l~~~-~--------------------------~~~~l~el~r~LkpgG~l~i~e  225 (294)
                      ++...-.. |                          ...++.-+.|+|+|||.+++.-
T Consensus       228 sNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~  285 (328)
T KOG2904|consen  228 SNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLEL  285 (328)
T ss_pred             cCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEe
Confidence            87655321 1                          2356777889999999998853

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=98.21  E-value=3.6e-06  Score=73.56  Aligned_cols=83  Identities=17%  Similarity=0.266  Sum_probs=67.1

Q ss_pred             CEEEEEcCcccHHHHHhcc-----ceEEEeccC---------------CCCcEEEccCCCC---CCCCCCccEEEEcccc
Q 022592          143 LVIADFGCGDARLAKSVKN-----KVFSFDLVS---------------NDPSVIACDMSNT---PLNSSSVDVAVFCLSL  199 (294)
Q Consensus       143 ~~VLDiGcG~G~~~~~l~~-----~v~gvD~s~---------------~~~~~~~~d~~~l---p~~~~~fD~Vi~~~~l  199 (294)
                      ..+||||||.|.++..+|.     .++|+++..               .|+.+++.|+..+   -+++++.|-|..++.=
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD  129 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD  129 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCC
Confidence            4899999999999998882     789999886               2778888888653   2456699999988776


Q ss_pred             cCC---------CHHHHHHHHHHhcCcCcEEEEEe
Q 022592          200 MGI---------NFPNYLQEAQRVLKPSGWLLIAE  225 (294)
Q Consensus       200 ~~~---------~~~~~l~el~r~LkpgG~l~i~e  225 (294)
                      -|.         -...++..+.++|+|||.|.+..
T Consensus       130 PWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT  164 (227)
T COG0220         130 PWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT  164 (227)
T ss_pred             CCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence            553         13589999999999999999974

>PLN02476 O-methyltransferase

Probab=98.21  E-value=5.9e-06  Score=74.28  Aligned_cols=95  Identities=12%  Similarity=0.097  Sum_probs=71.0

Q ss_pred             HHHHHHHhhccCCCCEEEEEcCcccHHHHHhc------cceEEEeccC----------------CCCcEEEccCCC-CC-
Q 022592          129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----------------NDPSVIACDMSN-TP-  184 (294)
Q Consensus       129 ~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~----------------~~~~~~~~d~~~-lp-  184 (294)
                      ...++..+.......+|||||+|+|..+.+++      ..++.+|.++                +++.++.+|+.+ ++ 
T Consensus       106 ~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~  185 (278)
T PLN02476        106 QAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKS  185 (278)
T ss_pred             HHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHH
Confidence            34456666555456799999999999888776      2689999987                367788888754 22 


Q ss_pred             C----CCCCccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEe
Q 022592          185 L----NSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAE  225 (294)
Q Consensus       185 ~----~~~~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e  225 (294)
                      +    ..++||+|+....  -.+...++..+.++|+|||.+++-.
T Consensus       186 l~~~~~~~~FD~VFIDa~--K~~Y~~y~e~~l~lL~~GGvIV~DN  228 (278)
T PLN02476        186 MIQNGEGSSYDFAFVDAD--KRMYQDYFELLLQLVRVGGVIVMDN  228 (278)
T ss_pred             HHhcccCCCCCEEEECCC--HHHHHHHHHHHHHhcCCCcEEEEec
Confidence            1    1368999987643  2356788999999999999988854

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=98.17  E-value=1e-05  Score=72.30  Aligned_cols=70  Identities=21%  Similarity=0.314  Sum_probs=54.4

Q ss_pred             HHHHHHHhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccC-------------CCCcEEEccCCCCCCCCCCccE
Q 022592          129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS-------------NDPSVIACDMSNTPLNSSSVDV  192 (294)
Q Consensus       129 ~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~-------------~~~~~~~~d~~~lp~~~~~fD~  192 (294)
                      ++.+++.+... ++..|||||||+|.++..++   ..|+|+|+++             .++.++.+|+..++++  .||.
T Consensus        18 ~~~iv~~~~~~-~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~--~~d~   94 (258)
T PRK14896         18 VDRIVEYAEDT-DGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLP--EFNK   94 (258)
T ss_pred             HHHHHHhcCCC-CcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCch--hceE
Confidence            34455555433 56799999999999998887   4799999986             3578899999888765  4899


Q ss_pred             EEEcccccC
Q 022592          193 AVFCLSLMG  201 (294)
Q Consensus       193 Vi~~~~l~~  201 (294)
                      |+++..++.
T Consensus        95 Vv~NlPy~i  103 (258)
T PRK14896         95 VVSNLPYQI  103 (258)
T ss_pred             EEEcCCccc
Confidence            999877554

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=98.16  E-value=6.2e-06  Score=69.24  Aligned_cols=86  Identities=23%  Similarity=0.256  Sum_probs=54.6

Q ss_pred             CCCCEEEEEcCcccHHHHHhc-----cceEEEeccC-----------------CCCcEEEccCCC-C---CCCCCCccEE
Q 022592          140 SPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS-----------------NDPSVIACDMSN-T---PLNSSSVDVA  193 (294)
Q Consensus       140 ~~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~-----------------~~~~~~~~d~~~-l---p~~~~~fD~V  193 (294)
                      ..+.+|||||||+|..+..++     ..|+..|..+                 .++.+...|-.+ .   .+...+||+|
T Consensus        44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~I  123 (173)
T PF10294_consen   44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDVI  123 (173)
T ss_dssp             TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSEE
T ss_pred             cCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCEE
Confidence            356799999999998776654     4789999876                 122333333222 1   1234579999


Q ss_pred             EEcccccCC-CHHHHHHHHHHhcCcCcEEEEEe
Q 022592          194 VFCLSLMGI-NFPNYLQEAQRVLKPSGWLLIAE  225 (294)
Q Consensus       194 i~~~~l~~~-~~~~~l~el~r~LkpgG~l~i~e  225 (294)
                      +.+.+++.. ....++..+.++|+|+|.++++.
T Consensus       124 lasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~  156 (173)
T PF10294_consen  124 LASDVLYDEELFEPLVRTLKRLLKPNGKVLLAY  156 (173)
T ss_dssp             EEES--S-GGGHHHHHHHHHHHBTT-TTEEEEE
T ss_pred             EEecccchHHHHHHHHHHHHHHhCCCCEEEEEe
Confidence            999999984 67789999999999999866654

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=98.15  E-value=4.6e-06  Score=75.09  Aligned_cols=70  Identities=19%  Similarity=0.200  Sum_probs=53.0

Q ss_pred             HHHHHHHhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccC------------CCCcEEEccCCCCCCCCCCccEE
Q 022592          129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS------------NDPSVIACDMSNTPLNSSSVDVA  193 (294)
Q Consensus       129 ~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~------------~~~~~~~~d~~~lp~~~~~fD~V  193 (294)
                      .+.+++.+... ++.+|||||||+|.++..++   .+|+|+|+++            .+++++.+|+..+++++-.+|.|
T Consensus        31 ~~~i~~~l~~~-~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~v  109 (272)
T PRK00274         31 LDKIVDAAGPQ-PGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQPLKV  109 (272)
T ss_pred             HHHHHHhcCCC-CcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcCcceE
Confidence            34455555433 56799999999999998887   3799999998            36788999999887654335888


Q ss_pred             EEcccc
Q 022592          194 VFCLSL  199 (294)
Q Consensus       194 i~~~~l  199 (294)
                      +++...
T Consensus       110 v~NlPY  115 (272)
T PRK00274        110 VANLPY  115 (272)
T ss_pred             EEeCCc
Confidence            887553

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.14  E-value=6e-06  Score=80.62  Aligned_cols=106  Identities=15%  Similarity=0.097  Sum_probs=75.8

Q ss_pred             CCCEEEEEcCcccHHHHHhc-----cceEEEeccC---------------CCCcEEEccCCCC--CCCCCCccEEEEccc
Q 022592          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSNT--PLNSSSVDVAVFCLS  198 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~---------------~~~~~~~~d~~~l--p~~~~~fD~Vi~~~~  198 (294)
                      ....+||||||.|.++..++     ..++|+|+..               .|+.++..|+..+  -++++++|.|+..+.
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FP  426 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFP  426 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECC
Confidence            34589999999999999887     3789999987               3566676666432  267889999998877


Q ss_pred             ccCC---------CHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCC-CeEE
Q 022592          199 LMGI---------NFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLG-FAPV  254 (294)
Q Consensus       199 l~~~---------~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~G-f~~~  254 (294)
                      --|+         --..++..+.++|+|||.+.+..-...+        .+.+...+.+.+ |+..
T Consensus       427 DPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~y--------~~~~~~~~~~~~~f~~~  484 (506)
T PRK01544        427 DPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIENY--------FYEAIELIQQNGNFEII  484 (506)
T ss_pred             CCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHHH--------HHHHHHHHHhCCCeEec
Confidence            6653         1358999999999999999986421111        133455566665 6654

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=98.12  E-value=3.4e-06  Score=72.75  Aligned_cols=92  Identities=16%  Similarity=0.254  Sum_probs=67.4

Q ss_pred             HHHHhhccCCCCEEEEEcCcccHHHHHhc------cceEEEeccC----------------CCCcEEEccCCC-CC----
Q 022592          132 IVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----------------NDPSVIACDMSN-TP----  184 (294)
Q Consensus       132 ~~~~l~~~~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~----------------~~~~~~~~d~~~-lp----  184 (294)
                      ++..+.......+||||||++|+-+.+++      .+++.+|+++                ++++++.+|+.+ ++    
T Consensus        36 lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~  115 (205)
T PF01596_consen   36 LLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELAN  115 (205)
T ss_dssp             HHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHH
T ss_pred             HHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHh
Confidence            44444433245699999999999888886      3899999987                367888888754 22    


Q ss_pred             -CCCCCccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEe
Q 022592          185 -LNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAE  225 (294)
Q Consensus       185 -~~~~~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e  225 (294)
                       ...++||+|+....  -.+....+..+.++|+|||.+++-.
T Consensus       116 ~~~~~~fD~VFiDa~--K~~y~~y~~~~~~ll~~ggvii~DN  155 (205)
T PF01596_consen  116 DGEEGQFDFVFIDAD--KRNYLEYFEKALPLLRPGGVIIADN  155 (205)
T ss_dssp             TTTTTSEEEEEEEST--GGGHHHHHHHHHHHEEEEEEEEEET
T ss_pred             ccCCCceeEEEEccc--ccchhhHHHHHhhhccCCeEEEEcc
Confidence             11357999997653  2366788889999999999999964

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=98.10  E-value=2.1e-05  Score=61.69  Aligned_cols=84  Identities=29%  Similarity=0.475  Sum_probs=63.3

Q ss_pred             EEEEcCcccHH--HHHhcc---ceEEEeccCC--------C-------CcEEEccCCC--CCCCC-CCccEEEEcccccC
Q 022592          145 IADFGCGDARL--AKSVKN---KVFSFDLVSN--------D-------PSVIACDMSN--TPLNS-SSVDVAVFCLSLMG  201 (294)
Q Consensus       145 VLDiGcG~G~~--~~~l~~---~v~gvD~s~~--------~-------~~~~~~d~~~--lp~~~-~~fD~Vi~~~~l~~  201 (294)
                      ++|+|||+|..  ...+..   .++|+|++..        .       +.+...|...  +++.. ..||++.+...+++
T Consensus        52 ~ld~~~g~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  131 (257)
T COG0500          52 VLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVISLLVLHL  131 (257)
T ss_pred             eEEecCCcCHHHHHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEEeeeeehhc
Confidence            99999999984  444433   6888999871        1       3677777776  77776 48999944444445


Q ss_pred             CCHHHHHHHHHHhcCcCcEEEEEeecC
Q 022592          202 INFPNYLQEAQRVLKPSGWLLIAEVKS  228 (294)
Q Consensus       202 ~~~~~~l~el~r~LkpgG~l~i~e~~~  228 (294)
                      .+....+.++.++|+|+|.+++.....
T Consensus       132 ~~~~~~~~~~~~~l~~~g~~~~~~~~~  158 (257)
T COG0500         132 LPPAKALRELLRVLKPGGRLVLSDLLR  158 (257)
T ss_pred             CCHHHHHHHHHHhcCCCcEEEEEeccC
Confidence            567899999999999999999986543

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=98.07  E-value=1.2e-06  Score=74.27  Aligned_cols=114  Identities=17%  Similarity=0.229  Sum_probs=77.9

Q ss_pred             CCEEEEEcCcccHHHHHhc---cceEEEeccCC---CC---cEEEccCCCCCCCCCCccEEEEccccc-CCCHHHHHHHH
Q 022592          142 SLVIADFGCGDARLAKSVK---NKVFSFDLVSN---DP---SVIACDMSNTPLNSSSVDVAVFCLSLM-GINFPNYLQEA  211 (294)
Q Consensus       142 ~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~~---~~---~~~~~d~~~lp~~~~~fD~Vi~~~~l~-~~~~~~~l~el  211 (294)
                      +.++||+|+|.|..+..++   .+|++.++|..   +.   .+-+..+.+..-.+-+||+|.|...|. +.++-+.++.+
T Consensus       113 ~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~kk~ynVl~~~ew~~t~~k~dli~clNlLDRc~~p~kLL~Di  192 (288)
T KOG3987|consen  113 PVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKKKNYNVLTEIEWLQTDVKLDLILCLNLLDRCFDPFKLLEDI  192 (288)
T ss_pred             CeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHHhhcCCceeeehhhhhcCceeehHHHHHHHHhhcChHHHHHHH
Confidence            3589999999999999887   47889998872   11   111111222222345699999988887 47999999999


Q ss_pred             HHhcCc-CcEEEEEeecC---------CCCCCCC-------CC----CHHHHHHHHHHCCCeEEE
Q 022592          212 QRVLKP-SGWLLIAEVKS---------RFDPNTG-------GA----DPNKFSKAVCDLGFAPVS  255 (294)
Q Consensus       212 ~r~Lkp-gG~l~i~e~~~---------~~~~~~~-------~~----~~~~~~~~l~~~Gf~~~~  255 (294)
                      ..+|+| +|.++++-+.+         ...+..+       +.    ....+.++|+++||.+..
T Consensus       193 ~~vl~psngrvivaLVLP~~hYVE~N~~g~~~rPdn~Le~~Gr~~ee~v~~~~e~lr~~g~~vea  257 (288)
T KOG3987|consen  193 HLVLAPSNGRVIVALVLPYMHYVETNTSGLPLRPDNLLENNGRSFEEEVARFMELLRNCGYRVEA  257 (288)
T ss_pred             HHHhccCCCcEEEEEEecccceeecCCCCCcCCchHHHHhcCccHHHHHHHHHHHHHhcCchhhh
Confidence            999999 89988863322         1111111       11    233566889999998876

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=98.07  E-value=2.6e-05  Score=67.65  Aligned_cols=97  Identities=18%  Similarity=0.275  Sum_probs=71.5

Q ss_pred             HHHHHHHhhccCCCCEEEEEcCcccHHHHHhc------cceEEEeccC----------------CCCcEEE-ccCCC-CC
Q 022592          129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----------------NDPSVIA-CDMSN-TP  184 (294)
Q Consensus       129 ~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~----------------~~~~~~~-~d~~~-lp  184 (294)
                      .-.++..+.......+|||||.+.|+-+.+++      .+++.+|+++                +.+.++. +|..+ +.
T Consensus        47 ~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~  126 (219)
T COG4122          47 TGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLS  126 (219)
T ss_pred             HHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHH
Confidence            34456666655566799999999999988887      3789999988                2455666 46543 22


Q ss_pred             -CCCCCccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEeec
Q 022592          185 -LNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVK  227 (294)
Q Consensus       185 -~~~~~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e~~  227 (294)
                       ...++||+|+.-..  -.+.+.++..+.++|+|||.+++-.+.
T Consensus       127 ~~~~~~fDliFIDad--K~~yp~~le~~~~lLr~GGliv~DNvl  168 (219)
T COG4122         127 RLLDGSFDLVFIDAD--KADYPEYLERALPLLRPGGLIVADNVL  168 (219)
T ss_pred             hccCCCccEEEEeCC--hhhCHHHHHHHHHHhCCCcEEEEeecc
Confidence             45689999986422  136789999999999999999996543

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.05  E-value=1.2e-05  Score=68.52  Aligned_cols=89  Identities=22%  Similarity=0.322  Sum_probs=65.9

Q ss_pred             HHHHhhc-cCCCCEEEEEcCcccHHHHHhc----c---ceEEEeccC-------------------------CCCcEEEc
Q 022592          132 IVKWLKD-HSPSLVIADFGCGDARLAKSVK----N---KVFSFDLVS-------------------------NDPSVIAC  178 (294)
Q Consensus       132 ~~~~l~~-~~~~~~VLDiGcG~G~~~~~l~----~---~v~gvD~s~-------------------------~~~~~~~~  178 (294)
                      ++++|.. ..|+.+.||+|.|+|+++..++    +   .++|+|.-+                         .++.++++
T Consensus        72 ~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvG  151 (237)
T KOG1661|consen   72 ALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVG  151 (237)
T ss_pred             HHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeC
Confidence            4555542 2488999999999999876554    1   347777554                         25568889


Q ss_pred             cCCCCCCCCCCccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEe
Q 022592          179 DMSNTPLNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAE  225 (294)
Q Consensus       179 d~~~lp~~~~~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e  225 (294)
                      |.....-+..+||.|.+...-     ....+++...|+|||.++|--
T Consensus       152 Dgr~g~~e~a~YDaIhvGAaa-----~~~pq~l~dqL~~gGrllip~  193 (237)
T KOG1661|consen  152 DGRKGYAEQAPYDAIHVGAAA-----SELPQELLDQLKPGGRLLIPV  193 (237)
T ss_pred             CccccCCccCCcceEEEccCc-----cccHHHHHHhhccCCeEEEee
Confidence            998877778899999886442     456677888899999999953

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=98.05  E-value=6.7e-06  Score=74.46  Aligned_cols=83  Identities=22%  Similarity=0.274  Sum_probs=61.9

Q ss_pred             CCCEEEEEcCcccHHHHHhc----cceEEEeccC---------------CCCcEEEccCCCCCCCCCCccEEEEcccccC
Q 022592          141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMG  201 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~---------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~  201 (294)
                      .+..|||+|||+|.++...+    .+|++++.|.               +++.++.+.++++.+| +..|+||+-..-.-
T Consensus       177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviISEPMG~m  255 (517)
T KOG1500|consen  177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIELP-EKVDVIISEPMGYM  255 (517)
T ss_pred             CCcEEEEecCCccHHHHHHHHhCcceEEEEehhHHHHHHHHHHhcCCccceEEEccCccccccCc-hhccEEEeccchhh
Confidence            56789999999999887665    4899999887               5778889999998886 56999997433222


Q ss_pred             -CCH--HHHHHHHHHhcCcCcEEEEE
Q 022592          202 -INF--PNYLQEAQRVLKPSGWLLIA  224 (294)
Q Consensus       202 -~~~--~~~l~el~r~LkpgG~l~i~  224 (294)
                       .+.  .+..-.+.+.|+|.|.++-.
T Consensus       256 L~NERMLEsYl~Ark~l~P~GkMfPT  281 (517)
T KOG1500|consen  256 LVNERMLESYLHARKWLKPNGKMFPT  281 (517)
T ss_pred             hhhHHHHHHHHHHHhhcCCCCcccCc
Confidence             221  23333456999999988753

>TIGR00095 RNA methyltransferase, RsmD family

Probab=98.05  E-value=2.8e-05  Score=66.27  Aligned_cols=83  Identities=11%  Similarity=0.104  Sum_probs=56.8

Q ss_pred             CCCEEEEEcCcccHHHHHhc----cceEEEeccC----------------CCCcEEEccCCCC-C-C-CCC-CccEEEEc
Q 022592          141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVS----------------NDPSVIACDMSNT-P-L-NSS-SVDVAVFC  196 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~----------------~~~~~~~~d~~~l-p-~-~~~-~fD~Vi~~  196 (294)
                      .+.+|||++||+|.++..++    ..|+++|.+.                .++.++.+|+... . + ... .||+|+..
T Consensus        49 ~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~D  128 (189)
T TIGR00095        49 QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLD  128 (189)
T ss_pred             CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEEC
Confidence            56799999999999988886    3799999987                2456788888442 2 1 122 47888876


Q ss_pred             ccccCCCHHHHHHHHH--HhcCcCcEEEE
Q 022592          197 LSLMGINFPNYLQEAQ--RVLKPSGWLLI  223 (294)
Q Consensus       197 ~~l~~~~~~~~l~el~--r~LkpgG~l~i  223 (294)
                      ..+........+..+.  .+|+++|.+++
T Consensus       129 PPy~~~~~~~~l~~l~~~~~l~~~~iiv~  157 (189)
T TIGR00095       129 PPFFNGALQALLELCENNWILEDTVLIVV  157 (189)
T ss_pred             cCCCCCcHHHHHHHHHHCCCCCCCeEEEE
Confidence            6654433445555444  36778886665

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.02  E-value=2.6e-05  Score=69.46  Aligned_cols=68  Identities=21%  Similarity=0.194  Sum_probs=50.9

Q ss_pred             HHHHHHHhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccC-------------CCCcEEEccCCCCCCCCCCcc-
Q 022592          129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS-------------NDPSVIACDMSNTPLNSSSVD-  191 (294)
Q Consensus       129 ~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~-------------~~~~~~~~d~~~lp~~~~~fD-  191 (294)
                      ...+++.+... ++.+|||||||+|.++..++   ..|+++|+++             .++.++.+|+..++++  .+| 
T Consensus        18 ~~~i~~~~~~~-~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~--~~d~   94 (253)
T TIGR00755        18 IQKIVEAANVL-EGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLP--DFPK   94 (253)
T ss_pred             HHHHHHhcCCC-CcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChh--HcCC
Confidence            34456555443 56799999999999999887   4799999987             3567889999888865  466 


Q ss_pred             --EEEEcccc
Q 022592          192 --VAVFCLSL  199 (294)
Q Consensus       192 --~Vi~~~~l  199 (294)
                        +|+++..+
T Consensus        95 ~~~vvsNlPy  104 (253)
T TIGR00755        95 QLKVVSNLPY  104 (253)
T ss_pred             cceEEEcCCh
Confidence              77766543

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=98.00  E-value=1.5e-05  Score=70.64  Aligned_cols=95  Identities=11%  Similarity=0.069  Sum_probs=69.2

Q ss_pred             HHHHHHHhhccCCCCEEEEEcCcccHHHHHhc------cceEEEeccC----------------CCCcEEEccCCC-CC-
Q 022592          129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----------------NDPSVIACDMSN-TP-  184 (294)
Q Consensus       129 ~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~----------------~~~~~~~~d~~~-lp-  184 (294)
                      ...++..+.......+|||||+++|+-+.+++      .+++.+|.++                ++++++.+|+.+ ++ 
T Consensus        67 ~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~  146 (247)
T PLN02589         67 EGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQ  146 (247)
T ss_pred             HHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHH
Confidence            34455555554355699999999999887775      3799999987                467788887755 22 


Q ss_pred             C-----CCCCccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEe
Q 022592          185 L-----NSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAE  225 (294)
Q Consensus       185 ~-----~~~~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e  225 (294)
                      +     ..++||+|+.-..  .......+..+.++|+|||.+++-.
T Consensus       147 l~~~~~~~~~fD~iFiDad--K~~Y~~y~~~~l~ll~~GGviv~DN  190 (247)
T PLN02589        147 MIEDGKYHGTFDFIFVDAD--KDNYINYHKRLIDLVKVGGVIGYDN  190 (247)
T ss_pred             HHhccccCCcccEEEecCC--HHHhHHHHHHHHHhcCCCeEEEEcC
Confidence            1     1368999987644  2356788888899999999988743

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=97.96  E-value=1.3e-05  Score=67.59  Aligned_cols=106  Identities=20%  Similarity=0.241  Sum_probs=65.5

Q ss_pred             CCCEEEEEcCcccHHHHHhc------cceEEEeccCC----CCcEEEccCCCCC--------C--CCCCccEEEEccccc
Q 022592          141 PSLVIADFGCGDARLAKSVK------NKVFSFDLVSN----DPSVIACDMSNTP--------L--NSSSVDVAVFCLSLM  200 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~~----~~~~~~~d~~~lp--------~--~~~~fD~Vi~~~~l~  200 (294)
                      .+.+|||+||++|.|+..+.      ..|+|+|+.+.    .+.++.+|+.+..        +  ....||+|++..+..
T Consensus        23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~dlv~~D~~~~  102 (181)
T PF01728_consen   23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPLQNVSFIQGDITNPENIKDIRKLLPESGEKFDLVLSDMAPN  102 (181)
T ss_dssp             TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-TTEEBTTGGGEEEEHSHHGGGSHGTTTCSESEEEE-----
T ss_pred             cccEEEEcCCcccceeeeeeecccccceEEEEeccccccccceeeeecccchhhHHHhhhhhccccccCcceeccccccC
Confidence            34799999999999998886      37899999974    4455555653311        1  126899999987544


Q ss_pred             CC-----C-------HHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEE
Q 022592          201 GI-----N-------FPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVS  255 (294)
Q Consensus       201 ~~-----~-------~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~  255 (294)
                      ..     +       ....+.-+...|+|||.+++--+....       . ..+...+.. .|+.+.
T Consensus       103 ~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~-------~-~~~~~~l~~-~F~~v~  160 (181)
T PF01728_consen  103 VSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPE-------I-EELIYLLKR-CFSKVK  160 (181)
T ss_dssp             --SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTT-------S-HHHHHHHHH-HHHHEE
T ss_pred             CCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCcc-------H-HHHHHHHHh-CCeEEE
Confidence            31     2       124455666789999999886554211       2 466666665 565544

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=97.94  E-value=0.00059  Score=62.76  Aligned_cols=84  Identities=17%  Similarity=0.260  Sum_probs=55.4

Q ss_pred             CCCEEEEEcCcccHHHHHhc---------cceEEEeccC---------------CCCcE--EEccCCC----CCC--CCC
Q 022592          141 PSLVIADFGCGDARLAKSVK---------NKVFSFDLVS---------------NDPSV--IACDMSN----TPL--NSS  188 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~---------~~v~gvD~s~---------------~~~~~--~~~d~~~----lp~--~~~  188 (294)
                      ++..|+|+|||+|.=+..|.         ..++++|+|.               +.+.+  +++|..+    ++-  ...
T Consensus        76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~  155 (319)
T TIGR03439        76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRS  155 (319)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccC
Confidence            55689999999998544332         2588999997               12333  5566544    221  123


Q ss_pred             CccEEEEcc-cccCCCHH---HHHHHHHH-hcCcCcEEEEE
Q 022592          189 SVDVAVFCL-SLMGINFP---NYLQEAQR-VLKPSGWLLIA  224 (294)
Q Consensus       189 ~fD~Vi~~~-~l~~~~~~---~~l~el~r-~LkpgG~l~i~  224 (294)
                      ...+|++.. ++..+++.   .+|+.+.+ .|.|||.|+|.
T Consensus       156 ~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG  196 (319)
T TIGR03439       156 RPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIG  196 (319)
T ss_pred             CccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEe
Confidence            356766655 45555544   67888899 99999999995

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=97.92  E-value=7.3e-05  Score=61.55  Aligned_cols=96  Identities=14%  Similarity=0.159  Sum_probs=74.9

Q ss_pred             HHHHHhhccCCCCEEEEEcCcccHHHHHhc------cceEEEeccC----------CCCcEEEccCCCCC-----CCCCC
Q 022592          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----------NDPSVIACDMSNTP-----LNSSS  189 (294)
Q Consensus       131 ~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~----------~~~~~~~~d~~~lp-----~~~~~  189 (294)
                      .+...+... .+.-|||+|.|+|-++..+.      ..+++++.|+          +.+.++.+|+.++.     ..+..
T Consensus        39 ~M~s~I~pe-sglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~gq~  117 (194)
T COG3963          39 KMASVIDPE-SGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHKGQF  117 (194)
T ss_pred             HHHhccCcc-cCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcCCCe
Confidence            344444443 56689999999999999886      3788999887          46778888887754     45677


Q ss_pred             ccEEEEcccccCCC---HHHHHHHHHHhcCcCcEEEEEeec
Q 022592          190 VDVAVFCLSLMGIN---FPNYLQEAQRVLKPSGWLLIAEVK  227 (294)
Q Consensus       190 fD~Vi~~~~l~~~~---~~~~l~el~r~LkpgG~l~i~e~~  227 (294)
                      ||.|+|+.-+-.+.   ..+.++.+...|.+||.++.....
T Consensus       118 ~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYg  158 (194)
T COG3963         118 FDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYG  158 (194)
T ss_pred             eeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence            99999998887653   347899999999999999987654

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=97.92  E-value=0.00011  Score=70.29  Aligned_cols=139  Identities=17%  Similarity=0.223  Sum_probs=92.1

Q ss_pred             HHHhcChhhHHHHHHhHHhhhccCCCcHHHHHHHHhhccCCCCEEEEEcCcccHHHHHhcc-ceEEEeccCC---C-Cc-
Q 022592          101 DYFNENPALFDMYHSGYQEQMSHWPELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVKN-KVFSFDLVSN---D-PS-  174 (294)
Q Consensus       101 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~~-~v~gvD~s~~---~-~~-  174 (294)
                      +.|.++...|......|.....           ..+. ...-..|+|..+|.|.|+.+|.. .|+.+...+.   + .. 
T Consensus       337 e~F~~Dt~~Wk~~V~~Y~~l~~-----------~~i~-~~~iRNVMDMnAg~GGFAAAL~~~~VWVMNVVP~~~~ntL~v  404 (506)
T PF03141_consen  337 EEFKEDTKHWKKRVSHYKKLLG-----------LAIK-WGRIRNVMDMNAGYGGFAAALIDDPVWVMNVVPVSGPNTLPV  404 (506)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhc-----------cccc-ccceeeeeeecccccHHHHHhccCCceEEEecccCCCCcchh
Confidence            4566777777776655543221           0111 11123699999999999999984 4555554441   1 11 


Q ss_pred             --------EEEccCCCCCCCCCCccEEEEcccccC----CCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHH
Q 022592          175 --------VIACDMSNTPLNSSSVDVAVFCLSLMG----INFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKF  242 (294)
Q Consensus       175 --------~~~~d~~~lp~~~~~fD~Vi~~~~l~~----~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~  242 (294)
                              ....=.+.++.-+.+||+|.+...+..    .+...++-|+.|+|+|||.++|-|-..         ....+
T Consensus       405 IydRGLIG~yhDWCE~fsTYPRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~~~---------vl~~v  475 (506)
T PF03141_consen  405 IYDRGLIGVYHDWCEAFSTYPRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDTVD---------VLEKV  475 (506)
T ss_pred             hhhcccchhccchhhccCCCCcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEeccHH---------HHHHH
Confidence                    111112345555789999999988875    377899999999999999999976321         33678


Q ss_pred             HHHHHHCCCeEEEEeccC
Q 022592          243 SKAVCDLGFAPVSKDFSN  260 (294)
Q Consensus       243 ~~~l~~~Gf~~~~~~~~~  260 (294)
                      ..++....|+....+...
T Consensus       476 ~~i~~~lrW~~~~~d~e~  493 (506)
T PF03141_consen  476 KKIAKSLRWEVRIHDTED  493 (506)
T ss_pred             HHHHHhCcceEEEEecCC
Confidence            888999999887765544

; GO: 0008168 methyltransferase activity

>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]

Probab=97.90  E-value=0.00011  Score=66.14  Aligned_cols=70  Identities=19%  Similarity=0.244  Sum_probs=52.0

Q ss_pred             CCccEEEEcccccC-CCHHHHHHHHHHhcCcCcEEEEEeecCCCCCC--------CCCCCHHHHHHHHHHCCCeEEEEe
Q 022592          188 SSVDVAVFCLSLMG-INFPNYLQEAQRVLKPSGWLLIAEVKSRFDPN--------TGGADPNKFSKAVCDLGFAPVSKD  257 (294)
Q Consensus       188 ~~fD~Vi~~~~l~~-~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~--------~~~~~~~~~~~~l~~~Gf~~~~~~  257 (294)
                      ++||+|+.++-+-- .+....|..+..+|+|||+.+-....-.....        .-.++.+++..+++..||+++...
T Consensus       258 ~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~g~~~~~siEls~edl~~v~~~~GF~~~ke~  336 (369)
T KOG2798|consen  258 GSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWINLGPLLYHFEDTHGVENEMSIELSLEDLKRVASHRGFEVEKER  336 (369)
T ss_pred             CccceEEEEEEeechHHHHHHHHHHHHhccCCcEEEeccceeeeccCCCCCcccccccccHHHHHHHHHhcCcEEEEee
Confidence            57999998866654 47889999999999999988765321111111        123688999999999999998744

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=97.89  E-value=5.4e-05  Score=63.89  Aligned_cols=111  Identities=23%  Similarity=0.288  Sum_probs=73.4

Q ss_pred             hhccCCCCEEEEEcCcccHHHHHhc---c--c---------eEEEeccC----------------CCCcEEEccCCCCCC
Q 022592          136 LKDHSPSLVIADFGCGDARLAKSVK---N--K---------VFSFDLVS----------------NDPSVIACDMSNTPL  185 (294)
Q Consensus       136 l~~~~~~~~VLDiGcG~G~~~~~l~---~--~---------v~gvD~s~----------------~~~~~~~~d~~~lp~  185 (294)
                      +....++..|||--||+|.++...+   .  .         ++|+|+++                ..+.+...|+..+++
T Consensus        23 la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~  102 (179)
T PF01170_consen   23 LAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPL  102 (179)
T ss_dssp             HTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGG
T ss_pred             HhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhccc
Confidence            3333467799999999999987664   2  3         67999987                245688889999998


Q ss_pred             CCCCccEEEEcccccCC-C--------HHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEE
Q 022592          186 NSSSVDVAVFCLSLMGI-N--------FPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSK  256 (294)
Q Consensus       186 ~~~~fD~Vi~~~~l~~~-~--------~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~  256 (294)
                      .++++|+|+++.-.-.- .        ...+++++.++|++...+++..             ...+.+.+...++.....
T Consensus       103 ~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~~-------------~~~~~~~~~~~~~~~~~~  169 (179)
T PF01170_consen  103 PDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTTS-------------NRELEKALGLKGWRKRKL  169 (179)
T ss_dssp             TTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEES-------------CCCHHHHHTSTTSEEEEE
T ss_pred             ccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEEC-------------CHHHHHHhcchhhceEEE
Confidence            78899999998776541 1        2467899999999943333332             135667777778877765


Q ss_pred             ecc
Q 022592          257 DFS  259 (294)
Q Consensus       257 ~~~  259 (294)
                      ...
T Consensus       170 ~~~  172 (179)
T PF01170_consen  170 YNG  172 (179)
T ss_dssp             EET
T ss_pred             EEe
Confidence            443

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>PRK04148 hypothetical protein; Provisional

Probab=97.87  E-value=8e-05  Score=59.61  Aligned_cols=83  Identities=17%  Similarity=0.119  Sum_probs=57.4

Q ss_pred             CCCEEEEEcCcccH-HHHHhc---cceEEEeccCC--------CCcEEEccCCCCCCC-CCCccEEEEcccccCCCHHHH
Q 022592          141 PSLVIADFGCGDAR-LAKSVK---NKVFSFDLVSN--------DPSVIACDMSNTPLN-SSSVDVAVFCLSLMGINFPNY  207 (294)
Q Consensus       141 ~~~~VLDiGcG~G~-~~~~l~---~~v~gvD~s~~--------~~~~~~~d~~~lp~~-~~~fD~Vi~~~~l~~~~~~~~  207 (294)
                      .+.+|||||||+|. ++..|+   ..|+++|+++.        .++++.+|+.+..+. -..+|+|.+...     +.+.
T Consensus        16 ~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirp-----p~el   90 (134)
T PRK04148         16 KNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRP-----PRDL   90 (134)
T ss_pred             cCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCC-----CHHH
Confidence            44689999999996 777776   48999999984        457899999876543 356899887643     3344


Q ss_pred             HHHHHHhcCc-CcEEEEEeecC
Q 022592          208 LQEAQRVLKP-SGWLLIAEVKS  228 (294)
Q Consensus       208 l~el~r~Lkp-gG~l~i~e~~~  228 (294)
                      ..-+.++.+. |.-++|..+..
T Consensus        91 ~~~~~~la~~~~~~~~i~~l~~  112 (134)
T PRK04148         91 QPFILELAKKINVPLIIKPLSG  112 (134)
T ss_pred             HHHHHHHHHHcCCCEEEEcCCC
Confidence            4444444433 55677765443

>PLN02823 spermine synthase

Probab=97.87  E-value=4.7e-05  Score=70.50  Aligned_cols=82  Identities=18%  Similarity=0.204  Sum_probs=59.6

Q ss_pred             CCEEEEEcCcccHHHHHhc-----cceEEEeccC-------------------CCCcEEEccCCC-CCCCCCCccEEEEc
Q 022592          142 SLVIADFGCGDARLAKSVK-----NKVFSFDLVS-------------------NDPSVIACDMSN-TPLNSSSVDVAVFC  196 (294)
Q Consensus       142 ~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~-------------------~~~~~~~~d~~~-lp~~~~~fD~Vi~~  196 (294)
                      ..+||.||+|.|..+..+.     .+++.||+.+                   ++++++.+|... +....++||+|++.
T Consensus       104 pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~D  183 (336)
T PLN02823        104 PKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIGD  183 (336)
T ss_pred             CCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEec
Confidence            4589999999999888765     3688999887                   355677777755 33345789999987


Q ss_pred             ccccC-------CCHHHHHH-HHHHhcCcCcEEEE
Q 022592          197 LSLMG-------INFPNYLQ-EAQRVLKPSGWLLI  223 (294)
Q Consensus       197 ~~l~~-------~~~~~~l~-el~r~LkpgG~l~i  223 (294)
                      ..-..       .--..+++ .+.+.|+|||++++
T Consensus       184 ~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~  218 (336)
T PLN02823        184 LADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVT  218 (336)
T ss_pred             CCCccccCcchhhccHHHHHHHHHHhcCCCcEEEE
Confidence            42111       11246777 89999999999876

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=97.87  E-value=0.00021  Score=65.75  Aligned_cols=115  Identities=11%  Similarity=0.090  Sum_probs=68.1

Q ss_pred             CCCEEEEEcCcccHHHHHhc-----cceEEEeccC------------C-----CCcEEE-ccCCCCC----CCCCCccEE
Q 022592          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS------------N-----DPSVIA-CDMSNTP----LNSSSVDVA  193 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~------------~-----~~~~~~-~d~~~lp----~~~~~fD~V  193 (294)
                      ...+|||||||+|.+...++     ..++|+|+++            .     ++.+.. .|...+.    .+.+.||+|
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli  193 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT  193 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence            34689999999997766554     3799999987            1     233332 2322221    245689999


Q ss_pred             EEcccccCCC------HHHHHHH----------------HHHhcCcCcEEEEEeec-----------CCCCCCCC-CCCH
Q 022592          194 VFCLSLMGIN------FPNYLQE----------------AQRVLKPSGWLLIAEVK-----------SRFDPNTG-GADP  239 (294)
Q Consensus       194 i~~~~l~~~~------~~~~l~e----------------l~r~LkpgG~l~i~e~~-----------~~~~~~~~-~~~~  239 (294)
                      +|+.-++-..      -..-.+.                ..+++-+||.+-++.-.           .+|....+ .-+.
T Consensus       194 vcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi~eS~~~~~~~gwftsmv~kk~~l  273 (321)
T PRK11727        194 LCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMIEESKAFAKQVLWFTSLVSKKENL  273 (321)
T ss_pred             EeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHhhHHHHHHHhhCcEEEEEeeccCCH
Confidence            9998887521      1111222                23556678877665200           01111111 1378


Q ss_pred             HHHHHHHHHCCCeEEE
Q 022592          240 NKFSKAVCDLGFAPVS  255 (294)
Q Consensus       240 ~~~~~~l~~~Gf~~~~  255 (294)
                      ..+.+.|++.|...+.
T Consensus       274 ~~l~~~L~~~~~~~~~  289 (321)
T PRK11727        274 PPLYRALKKVGAVEVK  289 (321)
T ss_pred             HHHHHHHHHcCCceEE
Confidence            8999999999984433

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=97.86  E-value=2.8e-05  Score=65.92  Aligned_cols=103  Identities=23%  Similarity=0.246  Sum_probs=73.1

Q ss_pred             EEEEEcCcccHHHHHhc-----cceEEEeccC---------------CCCcEEEccCCCCCCCCCCccEEEEcccccCCC
Q 022592          144 VIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGIN  203 (294)
Q Consensus       144 ~VLDiGcG~G~~~~~l~-----~~v~gvD~s~---------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~~  203 (294)
                      +++|||+|.|.=+..++     .+++.+|...               .|+.++.+.+++ +.....||+|++..+   .+
T Consensus        51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~aRAv---~~  126 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-PEYRESFDVVTARAV---AP  126 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEEESS---SS
T ss_pred             eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-cccCCCccEEEeehh---cC
Confidence            79999999998555554     3799999876               578899998888 555688999999876   35


Q ss_pred             HHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEE
Q 022592          204 FPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSK  256 (294)
Q Consensus       204 ~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~  256 (294)
                      ...++.-+...|++||.+++.-= ....     -..++....+...|.+...+
T Consensus       127 l~~l~~~~~~~l~~~G~~l~~KG-~~~~-----~El~~~~~~~~~~~~~~~~v  173 (184)
T PF02527_consen  127 LDKLLELARPLLKPGGRLLAYKG-PDAE-----EELEEAKKAWKKLGLKVLSV  173 (184)
T ss_dssp             HHHHHHHHGGGEEEEEEEEEEES-S--H-----HHHHTHHHHHHCCCEEEEEE
T ss_pred             HHHHHHHHHHhcCCCCEEEEEcC-CChH-----HHHHHHHhHHHHhCCEEeee
Confidence            67888889999999999998631 1110     01234455666677766653

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=97.86  E-value=3.2e-05  Score=70.42  Aligned_cols=71  Identities=21%  Similarity=0.253  Sum_probs=53.4

Q ss_pred             HHHHHHhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccC----------------CCCcEEEccCCCCCCCCCCc
Q 022592          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSV  190 (294)
Q Consensus       130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~----------------~~~~~~~~d~~~lp~~~~~f  190 (294)
                      ..+++.+... ++..|||||||+|.++..++   ..|+++|+++                .++.++.+|+...+++  .|
T Consensus        26 ~~Iv~~~~~~-~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~--~~  102 (294)
T PTZ00338         26 DKIVEKAAIK-PTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFP--YF  102 (294)
T ss_pred             HHHHHhcCCC-CcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhccc--cc
Confidence            4455554433 66799999999999988886   4799999986                2577899999876653  58


Q ss_pred             cEEEEcccccCCC
Q 022592          191 DVAVFCLSLMGIN  203 (294)
Q Consensus       191 D~Vi~~~~l~~~~  203 (294)
                      |+|+++...+...
T Consensus       103 d~VvaNlPY~Ist  115 (294)
T PTZ00338        103 DVCVANVPYQISS  115 (294)
T ss_pred             CEEEecCCcccCc
Confidence            9999876665543

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=97.84  E-value=0.00013  Score=61.58  Aligned_cols=115  Identities=16%  Similarity=0.211  Sum_probs=79.0

Q ss_pred             CCCEEEEEcCcccHHHHHhc------cceEEEeccC---------------------CCCcEEEccCCCCCCCCCCccEE
Q 022592          141 PSLVIADFGCGDARLAKSVK------NKVFSFDLVS---------------------NDPSVIACDMSNTPLNSSSVDVA  193 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~---------------------~~~~~~~~d~~~lp~~~~~fD~V  193 (294)
                      ++.+|+|+=-|.|+|+..++      ..|+++-..+                     .|.+.+..++..++ +.+..|++
T Consensus        48 pg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~-~pq~~d~~  126 (238)
T COG4798          48 PGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG-APQKLDLV  126 (238)
T ss_pred             CCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC-CCCccccc
Confidence            78899999999999999887      3666654333                     23344444444444 44556776


Q ss_pred             EEccccc--C------CCHHHHHHHHHHhcCcCcEEEEEeecCCCCC------CCCCCCHHHHHHHHHHCCCeEEEE
Q 022592          194 VFCLSLM--G------INFPNYLQEAQRVLKPSGWLLIAEVKSRFDP------NTGGADPNKFSKAVCDLGFAPVSK  256 (294)
Q Consensus       194 i~~~~l~--~------~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~------~~~~~~~~~~~~~l~~~Gf~~~~~  256 (294)
                      +.....|  |      -....+.+++++.|||||.+++.|....-..      ....++...+....+.+||.....
T Consensus       127 ~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~~~~ri~~a~V~a~veaaGFkl~ae  203 (238)
T COG4798         127 PTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDTITLHRIDPAVVIAEVEAAGFKLEAE  203 (238)
T ss_pred             ccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhhhhhcccChHHHHHHHHhhcceeeee
Confidence            6533332  2      1356889999999999999999875433211      223468889999999999988763

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=97.83  E-value=5e-05  Score=71.59  Aligned_cols=80  Identities=18%  Similarity=0.088  Sum_probs=60.7

Q ss_pred             CCEEEEEcCcccHHHHHhc-----cceEEEeccC---------------CCCcEEEccCCCCCCCCCCccEEEEcccccC
Q 022592          142 SLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMG  201 (294)
Q Consensus       142 ~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~---------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~  201 (294)
                      +.+|||++||+|.++..++     ..|+++|+++               .++.+..+|+..+......||+|++...   
T Consensus        58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP~---  134 (382)
T PRK04338         58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDPF---  134 (382)
T ss_pred             CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECCC---
Confidence            3589999999999998875     2799999997               2344777787553211456999998642   


Q ss_pred             CCHHHHHHHHHHhcCcCcEEEEE
Q 022592          202 INFPNYLQEAQRVLKPSGWLLIA  224 (294)
Q Consensus       202 ~~~~~~l~el~r~LkpgG~l~i~  224 (294)
                      -.+..++..+.+.+++||+++++
T Consensus       135 Gs~~~~l~~al~~~~~~gilyvS  157 (382)
T PRK04338        135 GSPAPFLDSAIRSVKRGGLLCVT  157 (382)
T ss_pred             CCcHHHHHHHHHHhcCCCEEEEE
Confidence            24467888888889999999997

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=97.72  E-value=0.00077  Score=62.03  Aligned_cols=76  Identities=13%  Similarity=0.033  Sum_probs=57.8

Q ss_pred             CCCCEEEEEcCcccHHHHHhc---cceEEEeccC--------CCCcEEEccCCCCCCCCCCccEEEEcccccCCCHHHHH
Q 022592          140 SPSLVIADFGCGDARLAKSVK---NKVFSFDLVS--------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGINFPNYL  208 (294)
Q Consensus       140 ~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~--------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~~~~~~l  208 (294)
                      .++..+|||||++|.++..+.   ..|++||..+        .++..+..|......+.+.+|+++|..+   ..|..+.
T Consensus       210 ~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmv---e~P~rva  286 (357)
T PRK11760        210 APGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGPMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMV---EKPARVA  286 (357)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechhcCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEecc---cCHHHHH
Confidence            467899999999999999887   4899999876        4566666665443222567999998766   3567788


Q ss_pred             HHHHHhcCcC
Q 022592          209 QEAQRVLKPS  218 (294)
Q Consensus       209 ~el~r~Lkpg  218 (294)
                      .-+..+|..|
T Consensus       287 ~lm~~Wl~~g  296 (357)
T PRK11760        287 ELMAQWLVNG  296 (357)
T ss_pred             HHHHHHHhcC
Confidence            8888888776

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.72  E-value=0.00067  Score=59.09  Aligned_cols=127  Identities=17%  Similarity=0.178  Sum_probs=85.8

Q ss_pred             HHHHHHhhccCCCCEEEEEcCcccHHHHHhc----cceEEEeccCCCCc-----------EEEccCCCCCCC--CCCccE
Q 022592          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVSNDPS-----------VIACDMSNTPLN--SSSVDV  192 (294)
Q Consensus       130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~~~~~-----------~~~~d~~~lp~~--~~~fD~  192 (294)
                      ..+++...-..++..+||||+-||.|+..+.    ..|+|+|....+.+           +...|+..+...  .+..|+
T Consensus        68 ~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~~~~d~  147 (245)
T COG1189          68 EKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFTEKPDL  147 (245)
T ss_pred             HHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcccCCCe
Confidence            3355555555678899999999999988775    48999999874332           223344443211  236788


Q ss_pred             EEEcccccCCCHHHHHHHHHHhcCcCcEEEEEeecCCCC------C--------CCCCCCHHHHHHHHHHCCCeEEEEec
Q 022592          193 AVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFD------P--------NTGGADPNKFSKAVCDLGFAPVSKDF  258 (294)
Q Consensus       193 Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e~~~~~~------~--------~~~~~~~~~~~~~l~~~Gf~~~~~~~  258 (294)
                      |++.-+  +.+...+|..+..+|+|+|.++.. +.+.|.      .        .........+.+++...||.+.....
T Consensus       148 ~v~DvS--FISL~~iLp~l~~l~~~~~~~v~L-vKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~gl~~  224 (245)
T COG1189         148 IVIDVS--FISLKLILPALLLLLKDGGDLVLL-VKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVKGLIK  224 (245)
T ss_pred             EEEEee--hhhHHHHHHHHHHhcCCCceEEEE-ecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEeeeEc
Confidence            888654  357788999999999999988875 222221      1        01112456788889999999988555


Q ss_pred             c
Q 022592          259 S  259 (294)
Q Consensus       259 ~  259 (294)
                      +
T Consensus       225 S  225 (245)
T COG1189         225 S  225 (245)
T ss_pred             c
Confidence            3

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=97.71  E-value=0.00019  Score=69.37  Aligned_cols=86  Identities=10%  Similarity=0.123  Sum_probs=61.2

Q ss_pred             CCCCEEEEEcCcccHHHHHhc------cceEEEeccC---------------CCCcEEEccCCCCC-CCCCCccEEEEcc
Q 022592          140 SPSLVIADFGCGDARLAKSVK------NKVFSFDLVS---------------NDPSVIACDMSNTP-LNSSSVDVAVFCL  197 (294)
Q Consensus       140 ~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~---------------~~~~~~~~d~~~lp-~~~~~fD~Vi~~~  197 (294)
                      .++.+|||++||+|.=+..++      ..++++|++.               .++.+...|...++ ...+.||.|+...
T Consensus       112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvDa  191 (470)
T PRK11933        112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLDA  191 (470)
T ss_pred             CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEcC
Confidence            477899999999998666654      3799999997               34556667776542 2235799999432


Q ss_pred             ccc----C-CCH------------------HHHHHHHHHhcCcCcEEEEEe
Q 022592          198 SLM----G-INF------------------PNYLQEAQRVLKPSGWLLIAE  225 (294)
Q Consensus       198 ~l~----~-~~~------------------~~~l~el~r~LkpgG~l~i~e  225 (294)
                      .-.    . -++                  ...|..+.++|||||.|+.+.
T Consensus       192 PCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYST  242 (470)
T PRK11933        192 PCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYST  242 (470)
T ss_pred             CCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEC
Confidence            221    1 111                  467889999999999998874

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=97.68  E-value=4.3e-05  Score=65.85  Aligned_cols=93  Identities=19%  Similarity=0.239  Sum_probs=55.6

Q ss_pred             HHHHHHhhccCCCCEEEEEcCcccHHHHHhc-----cceEEEeccC------------------------CCCcEEEccC
Q 022592          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS------------------------NDPSVIACDM  180 (294)
Q Consensus       130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~------------------------~~~~~~~~d~  180 (294)
                      ..+++.+... ++...+|||||.|......+     ...+|+++.+                        ..+.+..+|+
T Consensus        32 ~~il~~~~l~-~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdf  110 (205)
T PF08123_consen   32 SKILDELNLT-PDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDF  110 (205)
T ss_dssp             HHHHHHTT---TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-T
T ss_pred             HHHHHHhCCC-CCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCc
Confidence            3455555443 67799999999999876665     3689999987                        2345667777


Q ss_pred             CCCCCCC---CCccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEE
Q 022592          181 SNTPLNS---SSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLI  223 (294)
Q Consensus       181 ~~lp~~~---~~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i  223 (294)
                      .+.++..   ...|+|+++......+....|.++...||+|..++.
T Consensus       111 l~~~~~~~~~s~AdvVf~Nn~~F~~~l~~~L~~~~~~lk~G~~IIs  156 (205)
T PF08123_consen  111 LDPDFVKDIWSDADVVFVNNTCFDPDLNLALAELLLELKPGARIIS  156 (205)
T ss_dssp             TTHHHHHHHGHC-SEEEE--TTT-HHHHHHHHHHHTTS-TT-EEEE
T ss_pred             cccHhHhhhhcCCCEEEEeccccCHHHHHHHHHHHhcCCCCCEEEE
Confidence            6543211   346999988776544566777888888998877654

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.67  E-value=7.8e-05  Score=68.06  Aligned_cols=84  Identities=18%  Similarity=0.216  Sum_probs=53.9

Q ss_pred             CEEEEEcCcccHHHHHhc------cceEEEeccC---------------CCCcEEEccC----CCCCCCCCCccEEEEcc
Q 022592          143 LVIADFGCGDARLAKSVK------NKVFSFDLVS---------------NDPSVIACDM----SNTPLNSSSVDVAVFCL  197 (294)
Q Consensus       143 ~~VLDiGcG~G~~~~~l~------~~v~gvD~s~---------------~~~~~~~~d~----~~lp~~~~~fD~Vi~~~  197 (294)
                      .+|||+|.|+|..+.++.      ..++.++.|+               ....+-..|+    ..+|. ...|++|+...
T Consensus       115 qsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~-ad~ytl~i~~~  193 (484)
T COG5459         115 QSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPA-ADLYTLAIVLD  193 (484)
T ss_pred             chhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCc-cceeehhhhhh
Confidence            479999999998766654      2344444444               1222222333    33332 34577777666


Q ss_pred             cccCC----CHHHHHHHHHHhcCcCcEEEEEeec
Q 022592          198 SLMGI----NFPNYLQEAQRVLKPSGWLLIAEVK  227 (294)
Q Consensus       198 ~l~~~----~~~~~l~el~r~LkpgG~l~i~e~~  227 (294)
                      -|-+.    .....++.+..++.|||.|+|+|-.
T Consensus       194 eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErG  227 (484)
T COG5459         194 ELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERG  227 (484)
T ss_pred             hhccccCcchHHHHHHHHHHhccCCCeEEEEeCC
Confidence            66553    3456899999999999999999843

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=97.63  E-value=0.0012  Score=55.55  Aligned_cols=107  Identities=18%  Similarity=0.238  Sum_probs=71.6

Q ss_pred             CCCCEEEEEcCcccHHHHHhc------cceEEEeccC----CCCcEEEc-cCCCC--------CCCCCCccEEEEccccc
Q 022592          140 SPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----NDPSVIAC-DMSNT--------PLNSSSVDVAVFCLSLM  200 (294)
Q Consensus       140 ~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~----~~~~~~~~-d~~~l--------p~~~~~fD~Vi~~~~l~  200 (294)
                      .|+.+|||+||.+|.|++...      +.|.|||+-.    +.+.++.+ |+.+.        .+++-..|+|++...-.
T Consensus        68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~VdvVlSDMapn  147 (232)
T KOG4589|consen   68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEPPEGATIIQGNDVTDPETYRKIFEALPNRPVDVVLSDMAPN  147 (232)
T ss_pred             CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccCCCCcccccccccCCHHHHHHHHHhCCCCcccEEEeccCCC
Confidence            578899999999999998775      3789999875    45556665 66552        15677899999765533


Q ss_pred             CC-----CH-------HHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEE
Q 022592          201 GI-----NF-------PNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVS  255 (294)
Q Consensus       201 ~~-----~~-------~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~  255 (294)
                      .+     |-       ..++.-....++|+|.+++--|...-        ...+...|.. -|+.++
T Consensus       148 aTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e--------~~~l~r~l~~-~f~~Vk  205 (232)
T KOG4589|consen  148 ATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSE--------EALLQRRLQA-VFTNVK  205 (232)
T ss_pred             CcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCc--------hHHHHHHHHH-HhhhcE
Confidence            21     21       23455556778999999997655432        2445555544 355554

>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.63  E-value=2.7e-05  Score=63.18  Aligned_cols=78  Identities=22%  Similarity=0.265  Sum_probs=53.7

Q ss_pred             EEEEEcCcccHHHHHhccceEEEeccC-CCCcEEEccCCCCCCCCCCccEEEEcccccCC---CHHHHHHHHHHhcCcCc
Q 022592          144 VIADFGCGDARLAKSVKNKVFSFDLVS-NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGI---NFPNYLQEAQRVLKPSG  219 (294)
Q Consensus       144 ~VLDiGcG~G~~~~~l~~~v~gvD~s~-~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~---~~~~~l~el~r~LkpgG  219 (294)
                      -.+-||||.=.+.--    =.-+|.-. ..+.+++-.....+|.++++|+|++.++++|.   .-..+++++.|+|||||
T Consensus         5 ~kv~ig~G~~r~npg----Wi~~d~ed~~~vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G   80 (185)
T COG4627           5 EKVKIGAGGKRVNPG----WIITDVEDRPEVDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGG   80 (185)
T ss_pred             eEEEEeccccccCCC----ceeeehhcccccchhhhhhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCc
Confidence            467899996333210    01223222 12333333334578999999999999999995   55689999999999999


Q ss_pred             EEEEEe
Q 022592          220 WLLIAE  225 (294)
Q Consensus       220 ~l~i~e  225 (294)
                      +|-|+-
T Consensus        81 ~LriAv   86 (185)
T COG4627          81 KLRIAV   86 (185)
T ss_pred             EEEEEc
Confidence            999973

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=97.62  E-value=3.8e-05  Score=65.12  Aligned_cols=95  Identities=14%  Similarity=0.143  Sum_probs=64.3

Q ss_pred             HHHHHHhhcc-CCCCEEEEEcCcccHHHHHhc----cceEEEeccC----------------CCCcEEEccCCC-CC---
Q 022592          130 NIIVKWLKDH-SPSLVIADFGCGDARLAKSVK----NKVFSFDLVS----------------NDPSVIACDMSN-TP---  184 (294)
Q Consensus       130 ~~~~~~l~~~-~~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~----------------~~~~~~~~d~~~-lp---  184 (294)
                      +.+...|... ..+.++||+-||+|.++....    ..|+.||.+.                ..+.++..|+.. ++   
T Consensus        30 ealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~  109 (183)
T PF03602_consen   30 EALFNILQPRNLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLA  109 (183)
T ss_dssp             HHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHH
T ss_pred             HHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhc
Confidence            3355555543 477899999999999988665    4899999987                235667777543 21   


Q ss_pred             CCCCCccEEEEcccccCCC-HHHHHHHHH--HhcCcCcEEEEE
Q 022592          185 LNSSSVDVAVFCLSLMGIN-FPNYLQEAQ--RVLKPSGWLLIA  224 (294)
Q Consensus       185 ~~~~~fD~Vi~~~~l~~~~-~~~~l~el~--r~LkpgG~l~i~  224 (294)
                      .....||+|++........ ...++..+.  .+|+++|.+++-
T Consensus       110 ~~~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E  152 (183)
T PF03602_consen  110 KKGEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIIIE  152 (183)
T ss_dssp             HCTS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEE
T ss_pred             ccCCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEEE
Confidence            2467899999987766655 377888887  789999987774

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.61  E-value=7.2e-05  Score=60.15  Aligned_cols=61  Identities=23%  Similarity=0.415  Sum_probs=50.7

Q ss_pred             CCCEEEEEcCcccHHHHHhc----cceEEEeccC--------------CCCcEEEccCCCCCCCCCCccEEEEcccccC
Q 022592          141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVS--------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMG  201 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~--------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~  201 (294)
                      .+.+++|+|||.|.+.....    ..|.|+|+.+              -++.+++||+.++-+..+.||.++.+.-+--
T Consensus        48 Egkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNppFGT  126 (185)
T KOG3420|consen   48 EGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPPFGT  126 (185)
T ss_pred             cCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCCCCc
Confidence            57789999999999886554    5899999998              2567899999988877788999998877753

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.60  E-value=0.00028  Score=63.59  Aligned_cols=106  Identities=12%  Similarity=0.087  Sum_probs=62.8

Q ss_pred             CCEEEEEcCcccHHHHHhc------cceEEEeccCCCCc----------E-----EEccCC--CCCCCCCCccEEEEccc
Q 022592          142 SLVIADFGCGDARLAKSVK------NKVFSFDLVSNDPS----------V-----IACDMS--NTPLNSSSVDVAVFCLS  198 (294)
Q Consensus       142 ~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~~~~~----------~-----~~~d~~--~lp~~~~~fD~Vi~~~~  198 (294)
                      ..+|||+|||+|..+-++.      ..++++|.|+....          -     ...++.  ..++  ...|+|+++++
T Consensus        34 P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~DLvi~s~~  111 (274)
T PF09243_consen   34 PRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPF--PPDDLVIASYV  111 (274)
T ss_pred             CceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccC--CCCcEEEEehh
Confidence            3589999999998655443      37889999872110          0     001111  1122  23499999999


Q ss_pred             ccCC---CHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEE
Q 022592          199 LMGI---NFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVS  255 (294)
Q Consensus       199 l~~~---~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~  255 (294)
                      |...   ....+++.+.+.+.+  .|+|+|.....+    .-...+..+.|.+.|+.++.
T Consensus       112 L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~G----f~~i~~aR~~l~~~~~~v~A  165 (274)
T PF09243_consen  112 LNELPSAARAELVRSLWNKTAP--VLVLVEPGTPAG----FRRIAEARDQLLEKGAHVVA  165 (274)
T ss_pred             hhcCCchHHHHHHHHHHHhccC--cEEEEcCCChHH----HHHHHHHHHHHhhCCCceEC
Confidence            9874   355677777777766  888887432211    01223444555555655554

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=97.59  E-value=0.00035  Score=65.80  Aligned_cols=93  Identities=15%  Similarity=0.174  Sum_probs=69.9

Q ss_pred             hhccCCCCEEEEEcCcccHHHHHhc----cceEEEeccC-----------------CCCcEEEccCCCCC----CCCCCc
Q 022592          136 LKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS-----------------NDPSVIACDMSNTP----LNSSSV  190 (294)
Q Consensus       136 l~~~~~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~-----------------~~~~~~~~d~~~lp----~~~~~f  190 (294)
                      +.....+.+|||+=|=||.++.+.+    .+|++||+|.                 ..+.++++|+...-    -...+|
T Consensus       212 l~~~~~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~f  291 (393)
T COG1092         212 LGELAAGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKF  291 (393)
T ss_pred             HhhhccCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcc
Confidence            3333357899999999999998887    3999999997                 24578899886632    223589


Q ss_pred             cEEEEcccccC----------CCHHHHHHHHHHhcCcCcEEEEEeecC
Q 022592          191 DVAVFCLSLMG----------INFPNYLQEAQRVLKPSGWLLIAEVKS  228 (294)
Q Consensus       191 D~Vi~~~~l~~----------~~~~~~l~el~r~LkpgG~l~i~e~~~  228 (294)
                      |+||+...-..          -+....+..+.++|+|||.++++.-..
T Consensus       292 DlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~  339 (393)
T COG1092         292 DLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR  339 (393)
T ss_pred             cEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence            99998544332          145688999999999999999986443

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=97.59  E-value=0.001  Score=57.42  Aligned_cols=118  Identities=14%  Similarity=0.166  Sum_probs=73.6

Q ss_pred             EEEEcCcccHHHHHhc-----cceEEEeccC----------------CCCcEEEccCCC-CCCCCCCccEEEEcccccCC
Q 022592          145 IADFGCGDARLAKSVK-----NKVFSFDLVS----------------NDPSVIACDMSN-TPLNSSSVDVAVFCLSLMGI  202 (294)
Q Consensus       145 VLDiGcG~G~~~~~l~-----~~v~gvD~s~----------------~~~~~~~~d~~~-lp~~~~~fD~Vi~~~~l~~~  202 (294)
                      |+||||--|++..+|.     ..++++|+++                +++++..+|-.. ++. .+..|.|+.+.+=- .
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~-~e~~d~ivIAGMGG-~   78 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKP-GEDVDTIVIAGMGG-E   78 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--G-GG---EEEEEEE-H-H
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCC-CCCCCEEEEecCCH-H
Confidence            6899999999999997     3799999997                467788888543 432 23378888665411 1


Q ss_pred             CHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEE---EeccCCeEEEEEEEECCcc
Q 022592          203 NFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVS---KDFSNKMFIMFYFKKKEKQ  274 (294)
Q Consensus       203 ~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~---~~~~~~~f~~i~~~k~~~~  274 (294)
                      -....|.+....+.....|++....          ....+..+|.+.||.++.   +......|.++.+.+....
T Consensus        79 lI~~ILe~~~~~~~~~~~lILqP~~----------~~~~LR~~L~~~gf~I~~E~lv~e~~~~YeIi~~~~~~~~  143 (205)
T PF04816_consen   79 LIIEILEAGPEKLSSAKRLILQPNT----------HAYELRRWLYENGFEIIDEDLVEENGRFYEIIVAERGEEK  143 (205)
T ss_dssp             HHHHHHHHTGGGGTT--EEEEEESS-----------HHHHHHHHHHTTEEEEEEEEEEETTEEEEEEEEEESSS-
T ss_pred             HHHHHHHhhHHHhccCCeEEEeCCC----------ChHHHHHHHHHCCCEEEEeEEEeECCEEEEEEEEEeCCCC
Confidence            2235555555666655566664321          458899999999999988   3344555666666665543

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=97.59  E-value=0.00082  Score=63.04  Aligned_cols=78  Identities=14%  Similarity=0.187  Sum_probs=53.0

Q ss_pred             CEEEEEcCcccHHHHHhc---cceEEEeccC---------------CCCcEEEccCCCC-C-CC--------------CC
Q 022592          143 LVIADFGCGDARLAKSVK---NKVFSFDLVS---------------NDPSVIACDMSNT-P-LN--------------SS  188 (294)
Q Consensus       143 ~~VLDiGcG~G~~~~~l~---~~v~gvD~s~---------------~~~~~~~~d~~~l-p-~~--------------~~  188 (294)
                      .+|||++||+|.++..++   ..|+|+|+++               .++.++.+|+... + +.              ..
T Consensus       208 ~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~  287 (362)
T PRK05031        208 GDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLKSY  287 (362)
T ss_pred             CeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccccCC
Confidence            479999999999999887   4799999997               2567888888652 1 10              12


Q ss_pred             CccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEE
Q 022592          189 SVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIA  224 (294)
Q Consensus       189 ~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~  224 (294)
                      .||+|+....-.. -...++..+.+   |+++++++
T Consensus       288 ~~D~v~lDPPR~G-~~~~~l~~l~~---~~~ivyvS  319 (362)
T PRK05031        288 NFSTIFVDPPRAG-LDDETLKLVQA---YERILYIS  319 (362)
T ss_pred             CCCEEEECCCCCC-CcHHHHHHHHc---cCCEEEEE
Confidence            5899987654211 12344454443   67777775

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=97.58  E-value=0.00086  Score=62.70  Aligned_cols=78  Identities=12%  Similarity=0.142  Sum_probs=52.2

Q ss_pred             CEEEEEcCcccHHHHHhc---cceEEEeccC---------------CCCcEEEccCCCCCC-----------C-----CC
Q 022592          143 LVIADFGCGDARLAKSVK---NKVFSFDLVS---------------NDPSVIACDMSNTPL-----------N-----SS  188 (294)
Q Consensus       143 ~~VLDiGcG~G~~~~~l~---~~v~gvD~s~---------------~~~~~~~~d~~~lp~-----------~-----~~  188 (294)
                      .+|||+|||+|.++..++   ..|+|+|+++               .++.++.+|+..+.-           .     ..
T Consensus       199 ~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  278 (353)
T TIGR02143       199 GDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLKSY  278 (353)
T ss_pred             CcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhccccccccccccccC
Confidence            479999999999999887   4799999997               256788888765211           0     11


Q ss_pred             CccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEE
Q 022592          189 SVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIA  224 (294)
Q Consensus       189 ~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~  224 (294)
                      .||+|+.... ..--...++..+.   +|+++++|+
T Consensus       279 ~~d~v~lDPP-R~G~~~~~l~~l~---~~~~ivYvs  310 (353)
T TIGR02143       279 NCSTIFVDPP-RAGLDPDTCKLVQ---AYERILYIS  310 (353)
T ss_pred             CCCEEEECCC-CCCCcHHHHHHHH---cCCcEEEEE
Confidence            3788887544 1111234445444   477877775

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=97.56  E-value=0.00015  Score=62.29  Aligned_cols=78  Identities=23%  Similarity=0.313  Sum_probs=55.3

Q ss_pred             CCCEEEEEcCcccHHHHHhc-----cceEEEeccC----------------CCCcEEEccCCCCCCCCCCccEEEEcccc
Q 022592          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSVDVAVFCLSL  199 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~----------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l  199 (294)
                      ++..|||+-||-|.++..++     ..|+++|+++                ..+..+.+|+..++. .+.+|-|++...-
T Consensus       101 ~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~lp~  179 (200)
T PF02475_consen  101 PGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGKFDRVIMNLPE  179 (200)
T ss_dssp             TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-EEEEEE--TS
T ss_pred             cceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEECChH
Confidence            67799999999999988876     3799999997                356788999988765 7889999886531


Q ss_pred             cCCCHHHHHHHHHHhcCcCcEEE
Q 022592          200 MGINFPNYLQEAQRVLKPSGWLL  222 (294)
Q Consensus       200 ~~~~~~~~l~el~r~LkpgG~l~  222 (294)
                         .-..+|..+.+++++||++-
T Consensus       180 ---~~~~fl~~~~~~~~~~g~ih  199 (200)
T PF02475_consen  180 ---SSLEFLDAALSLLKEGGIIH  199 (200)
T ss_dssp             ---SGGGGHHHHHHHEEEEEEEE
T ss_pred             ---HHHHHHHHHHHHhcCCcEEE
Confidence               22468888999999999874

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=97.52  E-value=0.00044  Score=62.43  Aligned_cols=82  Identities=16%  Similarity=0.162  Sum_probs=61.8

Q ss_pred             CEEEEEcCcccHHHHHhc-----cceEEEeccC-------------------CCCcEEEccCCC-CCCCCCCccEEEEcc
Q 022592          143 LVIADFGCGDARLAKSVK-----NKVFSFDLVS-------------------NDPSVIACDMSN-TPLNSSSVDVAVFCL  197 (294)
Q Consensus       143 ~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~-------------------~~~~~~~~d~~~-lp~~~~~fD~Vi~~~  197 (294)
                      .+||-||.|.|..++.+.     .+++.||+.+                   +++.++..|... +.-...+||+|++..
T Consensus        78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~  157 (282)
T COG0421          78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDS  157 (282)
T ss_pred             CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcC
Confidence            599999999999999887     4788999876                   355666777654 222234799999765


Q ss_pred             ccc-CC----CHHHHHHHHHHhcCcCcEEEEE
Q 022592          198 SLM-GI----NFPNYLQEAQRVLKPSGWLLIA  224 (294)
Q Consensus       198 ~l~-~~----~~~~~l~el~r~LkpgG~l~i~  224 (294)
                      .=. ..    --..+++.+.++|+++|+++.-
T Consensus       158 tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q  189 (282)
T COG0421         158 TDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ  189 (282)
T ss_pred             CCCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence            433 11    2368999999999999999885

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=97.51  E-value=0.00065  Score=58.79  Aligned_cols=105  Identities=16%  Similarity=0.113  Sum_probs=73.2

Q ss_pred             CCEEEEEcCcccHHHHHhc-----cceEEEeccC---------------CCCcEEEccCCCCCCCCCCccEEEEcccccC
Q 022592          142 SLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMG  201 (294)
Q Consensus       142 ~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~---------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~  201 (294)
                      +.+++|||+|.|.=+.-++     ..|+-+|...               +|++++.+.++++.-....||+|++..+   
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAv---  144 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAV---  144 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehc---
Confidence            4699999999998555443     3688888766               5788888888877632111999998766   


Q ss_pred             CCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEE
Q 022592          202 INFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVS  255 (294)
Q Consensus       202 ~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~  255 (294)
                      .+....+.-+..++++||.+++.-+....+      -..+........|+.+..
T Consensus       145 a~L~~l~e~~~pllk~~g~~~~~k~~~~~~------e~~e~~~a~~~~~~~~~~  192 (215)
T COG0357         145 ASLNVLLELCLPLLKVGGGFLAYKGLAGKD------ELPEAEKAILPLGGQVEK  192 (215)
T ss_pred             cchHHHHHHHHHhcccCCcchhhhHHhhhh------hHHHHHHHHHhhcCcEEE
Confidence            244566677788999999887643221111      225667778888888777

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=97.49  E-value=0.00085  Score=58.03  Aligned_cols=115  Identities=18%  Similarity=0.206  Sum_probs=73.6

Q ss_pred             CCCCEEEEEcCcccHHHHHhc------cceEEEeccC-------------CCCcEEEccCCCCC---CCCCCccEEEEcc
Q 022592          140 SPSLVIADFGCGDARLAKSVK------NKVFSFDLVS-------------NDPSVIACDMSNTP---LNSSSVDVAVFCL  197 (294)
Q Consensus       140 ~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~-------------~~~~~~~~d~~~lp---~~~~~fD~Vi~~~  197 (294)
                      .++.+||-+|+++|.....++      +.|++|+.|+             .|+--+.+|+....   .--+.+|+|++.-
T Consensus        72 k~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~DV  151 (229)
T PF01269_consen   72 KPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYRMLVEMVDVIFQDV  151 (229)
T ss_dssp             -TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGTTTS--EEEEEEE-
T ss_pred             CCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhhcccccccEEEecC
Confidence            377899999999999887776      3899999998             57777888886522   1134799988653


Q ss_pred             cccCCCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCC-CCCHHHHHHHHHHCCCeEEE
Q 022592          198 SLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTG-GADPNKFSKAVCDLGFAPVS  255 (294)
Q Consensus       198 ~l~~~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~-~~~~~~~~~~l~~~Gf~~~~  255 (294)
                      + +.....-++..+...||+||.++++--.+..+.... .-.-.+-.+.|++.||++.+
T Consensus       152 a-Qp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~e  209 (229)
T PF01269_consen  152 A-QPDQARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPLE  209 (229)
T ss_dssp             S-STTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEEE
T ss_pred             C-ChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChhe
Confidence            3 223345667778889999999999743222211100 00112334667888999977

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=97.49  E-value=0.00018  Score=65.91  Aligned_cols=144  Identities=17%  Similarity=0.233  Sum_probs=82.2

Q ss_pred             CCcHHHHHHHHhhccCCCCEEEEEcCcccHHHHHhc------------cceEEEeccC-----------------CCCcE
Q 022592          125 PELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK------------NKVFSFDLVS-----------------NDPSV  175 (294)
Q Consensus       125 ~~~~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~------------~~v~gvD~s~-----------------~~~~~  175 (294)
                      |...++.++..+... ++.+|+|.+||+|.++..+.            ..++|+|+.+                 ....+
T Consensus        31 P~~i~~l~~~~~~~~-~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i  109 (311)
T PF02384_consen   31 PREIVDLMVKLLNPK-KGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINI  109 (311)
T ss_dssp             -HHHHHHHHHHHTT--TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEE
T ss_pred             HHHHHHHHHhhhhcc-ccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccc
Confidence            334455566666443 56689999999999876553            3689999987                 12346


Q ss_pred             EEccCCCCCCC--CCCccEEEEcccccCC---------C-------------HHHHHHHHHHhcCcCcEEEEEeecCCCC
Q 022592          176 IACDMSNTPLN--SSSVDVAVFCLSLMGI---------N-------------FPNYLQEAQRVLKPSGWLLIAEVKSRFD  231 (294)
Q Consensus       176 ~~~d~~~lp~~--~~~fD~Vi~~~~l~~~---------~-------------~~~~l~el~r~LkpgG~l~i~e~~~~~~  231 (294)
                      ..+|....+..  ...||+|+++..+...         +             ...++..+.+.|++||.+.++-..+...
T Consensus       110 ~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~~L~  189 (311)
T PF02384_consen  110 IQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNGFLF  189 (311)
T ss_dssp             EES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHHHHH
T ss_pred             cccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecchhhh
Confidence            77777654433  4689999987655311         0             1258899999999999988775443321


Q ss_pred             CCCCCCCHHHHHHHHHHCCC-eE-EEE-----eccCCeEEEEEEEECC
Q 022592          232 PNTGGADPNKFSKAVCDLGF-AP-VSK-----DFSNKMFIMFYFKKKE  272 (294)
Q Consensus       232 ~~~~~~~~~~~~~~l~~~Gf-~~-~~~-----~~~~~~f~~i~~~k~~  272 (294)
                      ..   -....+.+.|-+.++ +. +..     ........++++.|..
T Consensus       190 ~~---~~~~~iR~~ll~~~~i~aVI~Lp~~~F~~t~v~t~ilil~k~~  234 (311)
T PF02384_consen  190 SS---SSEKKIRKYLLENGYIEAVISLPSNLFKPTGVPTSILILNKKK  234 (311)
T ss_dssp             GS---THHHHHHHHHHHHEEEEEEEE--TTSSSSSSS-EEEEEEEESS
T ss_pred             cc---chHHHHHHHHHhhchhhEEeecccceecccCcCceEEEEeecc
Confidence            10   012466655544443 22 221     1133445788888865

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>PRK00536 speE spermidine synthase; Provisional

Probab=97.42  E-value=0.00079  Score=60.15  Aligned_cols=103  Identities=13%  Similarity=0.033  Sum_probs=67.8

Q ss_pred             CCCEEEEEcCcccHHHHHhcc---ceEEEeccC-------------------CCCcEEEccCCCCCCCCCCccEEEEccc
Q 022592          141 PSLVIADFGCGDARLAKSVKN---KVFSFDLVS-------------------NDPSVIACDMSNTPLNSSSVDVAVFCLS  198 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~~---~v~gvD~s~-------------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~  198 (294)
                      ...+||=||.|.|..++.+..   +|+.||+.+                   ++++++.. +.  ....++||+||.-..
T Consensus        72 ~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~--~~~~~~fDVIIvDs~  148 (262)
T PRK00536         72 ELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LL--DLDIKKYDLIICLQE  148 (262)
T ss_pred             CCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hh--hccCCcCCEEEEcCC
Confidence            446999999999999998873   789999876                   23344331 11  112368999998643


Q ss_pred             ccCCCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEE
Q 022592          199 LMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVS  255 (294)
Q Consensus       199 l~~~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~  255 (294)
                          ....+.+.+.++|+|||.++.-.-...+.+    -....+.+.+++ .|..+.
T Consensus       149 ----~~~~fy~~~~~~L~~~Gi~v~Qs~sp~~~~----~~~~~i~~~l~~-~F~~v~  196 (262)
T PRK00536        149 ----PDIHKIDGLKRMLKEDGVFISVAKHPLLEH----VSMQNALKNMGD-FFSIAM  196 (262)
T ss_pred             ----CChHHHHHHHHhcCCCcEEEECCCCcccCH----HHHHHHHHHHHh-hCCceE
Confidence                347888999999999999988421111110    012344455555 688666

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=97.39  E-value=0.00042  Score=66.05  Aligned_cols=83  Identities=24%  Similarity=0.436  Sum_probs=70.3

Q ss_pred             EEEEEcCcccHHHHHhc----cceEEEeccC--------------CCCcEEEccCCCCCCCCCCccEEEEcccccCC--C
Q 022592          144 VIADFGCGDARLAKSVK----NKVFSFDLVS--------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGI--N  203 (294)
Q Consensus       144 ~VLDiGcG~G~~~~~l~----~~v~gvD~s~--------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~--~  203 (294)
                      ++|-+|||.-.+...+.    ..++.+|+|+              ....+...|+..+.|++++||+|+.-..+.+.  +
T Consensus        51 ~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~~d  130 (482)
T KOG2352|consen   51 KILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALFED  130 (482)
T ss_pred             eeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCccccccCC
Confidence            89999999999888776    4789999998              23467889999999999999999999999873  1


Q ss_pred             ---------HHHHHHHHHHhcCcCcEEEEEee
Q 022592          204 ---------FPNYLQEAQRVLKPSGWLLIAEV  226 (294)
Q Consensus       204 ---------~~~~l~el~r~LkpgG~l~i~e~  226 (294)
                               ....+.++.|+|+|||+++.+.+
T Consensus       131 e~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl  162 (482)
T KOG2352|consen  131 EDALLNTAHVSNMLDEVSRVLAPGGKYISVTL  162 (482)
T ss_pred             chhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence                     23567899999999999888765

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=97.38  E-value=0.0027  Score=58.73  Aligned_cols=109  Identities=17%  Similarity=0.177  Sum_probs=82.4

Q ss_pred             CCCEEEEEcCcccHHHHHhc----cceEEEeccC----------------CCCcEEEccCCCCCCCCCCccEEEEccccc
Q 022592          141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLM  200 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~----------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~  200 (294)
                      +|.+|||+=||-|.++..++    ..|+++|+++                ..+..+.+|+..++..-+.+|-|++.+.- 
T Consensus       188 ~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p~-  266 (341)
T COG2520         188 EGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLPK-  266 (341)
T ss_pred             CCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCCC-
Confidence            57899999999999999887    2599999998                23668899998877655789999987552 


Q ss_pred             CCCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEE
Q 022592          201 GINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPV  254 (294)
Q Consensus       201 ~~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~  254 (294)
                        +-..++..+.+.+++||.+.+.++........  .....+.....+.|+++.
T Consensus       267 --~a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~~--~~~~~i~~~~~~~~~~~~  316 (341)
T COG2520         267 --SAHEFLPLALELLKDGGIIHYYEFVPEDDIEE--RPEKRIKSAARKGGYKVE  316 (341)
T ss_pred             --cchhhHHHHHHHhhcCcEEEEEeccchhhccc--chHHHHHHHHhhccCcce
Confidence              44678888899999999999988665443211  244667777777776433

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=97.33  E-value=0.00054  Score=60.91  Aligned_cols=74  Identities=18%  Similarity=0.124  Sum_probs=58.0

Q ss_pred             cHHHHHHHHhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccC-------------CCCcEEEccCCCCCCCCC-C
Q 022592          127 LPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS-------------NDPSVIACDMSNTPLNSS-S  189 (294)
Q Consensus       127 ~~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~-------------~~~~~~~~d~~~lp~~~~-~  189 (294)
                      +.++.+++..... ++..|||||+|.|.++..|+   ..|+++++.+             .++.++.+|+....++.- .
T Consensus        17 ~v~~kIv~~a~~~-~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~~   95 (259)
T COG0030          17 NVIDKIVEAANIS-PGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPSLAQ   95 (259)
T ss_pred             HHHHHHHHhcCCC-CCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchhhcC
Confidence            3456667766655 46799999999999999997   4899999876             468899999999888653 5


Q ss_pred             ccEEEEcccccC
Q 022592          190 VDVAVFCLSLMG  201 (294)
Q Consensus       190 fD~Vi~~~~l~~  201 (294)
                      ++.|+++.-..-
T Consensus        96 ~~~vVaNlPY~I  107 (259)
T COG0030          96 PYKVVANLPYNI  107 (259)
T ss_pred             CCEEEEcCCCcc
Confidence            788888765543

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=97.31  E-value=0.0014  Score=58.18  Aligned_cols=110  Identities=15%  Similarity=0.106  Sum_probs=72.6

Q ss_pred             CCCEEEEEcCcccHHHHHhc-----cceEEEeccC-------------------CCCcEEEccCCC-CCCCCC-CccEEE
Q 022592          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS-------------------NDPSVIACDMSN-TPLNSS-SVDVAV  194 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~-------------------~~~~~~~~d~~~-lp~~~~-~fD~Vi  194 (294)
                      ...+||=||.|.|..+..+.     ..++.||+.+                   +++.++.+|... +.-..+ .||+|+
T Consensus        76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi  155 (246)
T PF01564_consen   76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVII  155 (246)
T ss_dssp             ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEE
T ss_pred             CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEE
Confidence            45699999999999999886     3789999887                   366788888754 222233 899999


Q ss_pred             EcccccC-CC----HHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEE
Q 022592          195 FCLSLMG-IN----FPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPV  254 (294)
Q Consensus       195 ~~~~l~~-~~----~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~  254 (294)
                      ....-.. ..    -..+++.+.++|+|||++++-.-.....    ......+...+++....+.
T Consensus       156 ~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~----~~~~~~i~~tl~~~F~~v~  216 (246)
T PF01564_consen  156 VDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFLH----PELFKSILKTLRSVFPQVK  216 (246)
T ss_dssp             EESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTTT----HHHHHHHHHHHHTTSSEEE
T ss_pred             EeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCcccc----hHHHHHHHHHHHHhCCceE
Confidence            8554422 11    2589999999999999998854221111    1122445566777766443

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=97.30  E-value=0.00054  Score=61.97  Aligned_cols=103  Identities=17%  Similarity=0.256  Sum_probs=69.3

Q ss_pred             CCCEEEEEcCcccHHHHHhc----cceEEEeccC-----------------CCCcEEEccCCCC-C--CCCCCccEEEEc
Q 022592          141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVS-----------------NDPSVIACDMSNT-P--LNSSSVDVAVFC  196 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~-----------------~~~~~~~~d~~~l-p--~~~~~fD~Vi~~  196 (294)
                      .+.+|||+=|=||.++...+    .+|++||.|.                 ..+.++..|+... .  -..+.||+||+.
T Consensus       123 ~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlD  202 (286)
T PF10672_consen  123 KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILD  202 (286)
T ss_dssp             TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE-
T ss_pred             CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEEC
Confidence            56799999999999988765    3799999997                 3557888888652 1  124689999985


Q ss_pred             ccccC---C----CHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCC
Q 022592          197 LSLMG---I----NFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLG  250 (294)
Q Consensus       197 ~~l~~---~----~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~G  250 (294)
                      ..-.-   .    +....+..+.++|+|||.|+++.-...       ++.+.+.+++.+++
T Consensus       203 PPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~-------i~~~~l~~~~~~~a  256 (286)
T PF10672_consen  203 PPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSHH-------ISPDFLLEAVAEAA  256 (286)
T ss_dssp             -SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--TT-------S-HHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCcc-------cCHHHHHHHHHHhC
Confidence            44321   1    456788899999999999987653322       35577777776655

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine

Probab=97.25  E-value=0.0032  Score=58.37  Aligned_cols=86  Identities=24%  Similarity=0.357  Sum_probs=52.2

Q ss_pred             CCCEEEEEcCcccHHHHHhc--------------c-------ceEEEeccCC-------------------CCcE---EE
Q 022592          141 PSLVIADFGCGDARLAKSVK--------------N-------KVFSFDLVSN-------------------DPSV---IA  177 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~--------------~-------~v~gvD~s~~-------------------~~~~---~~  177 (294)
                      ...+|+|+||.+|..+..+.              .       .|+.-|+-.+                   ..-|   +.
T Consensus        16 ~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gvp   95 (334)
T PF03492_consen   16 KPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGVP   95 (334)
T ss_dssp             TEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEEE
T ss_pred             CceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEecC
Confidence            34589999999999776553              1       4566777652                   1112   23


Q ss_pred             ccCCCCCCCCCCccEEEEcccccCC--------C--------------------------------HHHHHHHHHHhcCc
Q 022592          178 CDMSNTPLNSSSVDVAVFCLSLMGI--------N--------------------------------FPNYLQEAQRVLKP  217 (294)
Q Consensus       178 ~d~~~lp~~~~~fD~Vi~~~~l~~~--------~--------------------------------~~~~l~el~r~Lkp  217 (294)
                      +.+..--+|+++.|+++++.+|||.        +                                +..+|+.=++-|+|
T Consensus        96 gSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~  175 (334)
T PF03492_consen   96 GSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEELVP  175 (334)
T ss_dssp             S-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHEEE
T ss_pred             chhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhheecc
Confidence            4555555789999999999999982        1                                11355556678999


Q ss_pred             CcEEEEEee
Q 022592          218 SGWLLIAEV  226 (294)
Q Consensus       218 gG~l~i~e~  226 (294)
                      ||.++++-+
T Consensus       176 GG~mvl~~~  184 (334)
T PF03492_consen  176 GGRMVLTFL  184 (334)
T ss_dssp             EEEEEEEEE
T ss_pred             CcEEEEEEe
Confidence            999999743

Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.

>PLN02668 indole-3-acetate carboxyl methyltransferase

Probab=97.24  E-value=0.0036  Score=58.85  Aligned_cols=42  Identities=19%  Similarity=0.339  Sum_probs=32.6

Q ss_pred             CCCCCccEEEEcccccCCC---------------------------------------HHHHHHHHHHhcCcCcEEEEEe
Q 022592          185 LNSSSVDVAVFCLSLMGIN---------------------------------------FPNYLQEAQRVLKPSGWLLIAE  225 (294)
Q Consensus       185 ~~~~~fD~Vi~~~~l~~~~---------------------------------------~~~~l~el~r~LkpgG~l~i~e  225 (294)
                      ||.++.++++++.+|||.+                                       +..+|+.=++-|.|||.++++-
T Consensus       158 fP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~~  237 (386)
T PLN02668        158 FPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLVC  237 (386)
T ss_pred             cCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEE
Confidence            7889999999999999931                                       1234555567899999999974


Q ss_pred             e
Q 022592          226 V  226 (294)
Q Consensus       226 ~  226 (294)
                      +
T Consensus       238 ~  238 (386)
T PLN02668        238 L  238 (386)
T ss_pred             e
Confidence            3

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=97.20  E-value=0.0074  Score=56.48  Aligned_cols=122  Identities=14%  Similarity=0.161  Sum_probs=77.6

Q ss_pred             HHHHHHhhccCCCCEEEEEcCcccHHHHHhc---c----ceEEEeccC---------------CCCcEEEccCCCCC---
Q 022592          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK---N----KVFSFDLVS---------------NDPSVIACDMSNTP---  184 (294)
Q Consensus       130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~----~v~gvD~s~---------------~~~~~~~~d~~~lp---  184 (294)
                      ..+...+....++.+|||+.+++|.=+.+++   .    .|+++|.+.               .++..+..|...++   
T Consensus       145 S~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~  224 (355)
T COG0144         145 SQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELL  224 (355)
T ss_pred             HHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccc
Confidence            3444444444578899999999997544443   2    369999998               34557777765443   


Q ss_pred             CCCCCccEEEEcccccC-------CC----------------HHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHH
Q 022592          185 LNSSSVDVAVFCLSLMG-------IN----------------FPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNK  241 (294)
Q Consensus       185 ~~~~~fD~Vi~~~~l~~-------~~----------------~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~  241 (294)
                      ...+.||.|+.-..-..       .+                -..+|..+.++|||||.|+.+...-...     -+.+.
T Consensus       225 ~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~e-----ENE~v  299 (355)
T COG0144         225 PGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPE-----ENEEV  299 (355)
T ss_pred             cccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchh-----cCHHH
Confidence            22235999995332211       11                1368899999999999999986432221     13355


Q ss_pred             HHHHHHHC-CCeEEEE
Q 022592          242 FSKAVCDL-GFAPVSK  256 (294)
Q Consensus       242 ~~~~l~~~-Gf~~~~~  256 (294)
                      +..+|++. +|+.+..
T Consensus       300 V~~~L~~~~~~~~~~~  315 (355)
T COG0144         300 VERFLERHPDFELEPV  315 (355)
T ss_pred             HHHHHHhCCCceeecc
Confidence            66777765 5655553

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=97.13  E-value=0.0041  Score=55.94  Aligned_cols=121  Identities=19%  Similarity=0.268  Sum_probs=65.7

Q ss_pred             CEEEEEcCcccHHHHHhc-------cceEEEeccC-----------------CCCcEEEccCCCCCCCCCCccEEEEccc
Q 022592          143 LVIADFGCGDARLAKSVK-------NKVFSFDLVS-----------------NDPSVIACDMSNTPLNSSSVDVAVFCLS  198 (294)
Q Consensus       143 ~~VLDiGcG~G~~~~~l~-------~~v~gvD~s~-----------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~  198 (294)
                      .+|+=||||+=.++..+.       ..|+++|+++                 .++.++.+|+.+.+..-..||+|+....
T Consensus       122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAal  201 (276)
T PF03059_consen  122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAAL  201 (276)
T ss_dssp             -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-TT
T ss_pred             ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhhh
Confidence            499999999876654443       2578999987                 3678899999877655567999887655


Q ss_pred             ccC--CCHHHHHHHHHHhcCcCcEEEEEe---ecCCCCCCCCCCCHHHHHHHHHHCCCeEEEEe--ccCCeEEEEEEEEC
Q 022592          199 LMG--INFPNYLQEAQRVLKPSGWLLIAE---VKSRFDPNTGGADPNKFSKAVCDLGFAPVSKD--FSNKMFIMFYFKKK  271 (294)
Q Consensus       199 l~~--~~~~~~l~el~r~LkpgG~l~i~e---~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~--~~~~~f~~i~~~k~  271 (294)
                      ..-  .+..+++..+.+.++||..+++-.   +...+++.   .+.++    +.  ||++..+.  .....-+++++||.
T Consensus       202 Vg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa~GlR~~LYp~---vd~~~----l~--gf~~~~~~hP~~~ViNSvv~~rk~  272 (276)
T PF03059_consen  202 VGMDAEPKEEILEHLAKHMAPGARLVVRSAHGLRSFLYPV---VDPED----LR--GFEVLAVVHPTDEVINSVVFARKK  272 (276)
T ss_dssp             -S----SHHHHHHHHHHHS-TTSEEEEEE--GGGGGSS-------TGG----GT--TEEEEEEE---TT---EEEEE---
T ss_pred             cccccchHHHHHHHHHhhCCCCcEEEEecchhhHHHcCCC---CChHH----CC--CeEEEEEECCCCCceeEEEEEEec
Confidence            443  377899999999999999888853   22223221   11121    22  99987633  23345677777775


Q ss_pred             C
Q 022592          272 E  272 (294)
Q Consensus       272 ~  272 (294)
                      .
T Consensus       273 ~  273 (276)
T PF03059_consen  273 Q  273 (276)
T ss_dssp             -
T ss_pred             c
Confidence            4

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=97.10  E-value=0.0021  Score=54.29  Aligned_cols=95  Identities=14%  Similarity=0.136  Sum_probs=67.3

Q ss_pred             HHHHHHhhc-cCCCCEEEEEcCcccHHHHHhc----cceEEEeccC----------------CCCcEEEccCCCC-C-CC
Q 022592          130 NIIVKWLKD-HSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS----------------NDPSVIACDMSNT-P-LN  186 (294)
Q Consensus       130 ~~~~~~l~~-~~~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~----------------~~~~~~~~d~~~l-p-~~  186 (294)
                      +.+..+|.. ...+.++||+=+|+|.++....    ..++.||.+.                .+..++..|+... + ..
T Consensus        31 EalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~  110 (187)
T COG0742          31 EALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLG  110 (187)
T ss_pred             HHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcC
Confidence            446666665 2578899999999999988775    4899999887                3455666776532 1 12


Q ss_pred             C-CCccEEEEcccccCC--CHHHHHHH--HHHhcCcCcEEEEE
Q 022592          187 S-SSVDVAVFCLSLMGI--NFPNYLQE--AQRVLKPSGWLLIA  224 (294)
Q Consensus       187 ~-~~fD~Vi~~~~l~~~--~~~~~l~e--l~r~LkpgG~l~i~  224 (294)
                      . ++||+|+...-++.-  +....+..  -..+|+|+|.+++-
T Consensus       111 ~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E  153 (187)
T COG0742         111 TREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVE  153 (187)
T ss_pred             CCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEE
Confidence            2 259999998887752  33444444  55789999998884

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=97.07  E-value=0.0068  Score=57.07  Aligned_cols=79  Identities=19%  Similarity=0.153  Sum_probs=60.5

Q ss_pred             CEEEEEcCcccHHHHHhc------cceEEEeccCC---------------CCcEEEccCCCCC-CCCCCccEEEEccccc
Q 022592          143 LVIADFGCGDARLAKSVK------NKVFSFDLVSN---------------DPSVIACDMSNTP-LNSSSVDVAVFCLSLM  200 (294)
Q Consensus       143 ~~VLDiGcG~G~~~~~l~------~~v~gvD~s~~---------------~~~~~~~d~~~lp-~~~~~fD~Vi~~~~l~  200 (294)
                      .+|||+.||+|..+..++      ..|+++|+++.               ++.++..|+..+- .....||+|.... + 
T Consensus        46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f-  123 (374)
T TIGR00308        46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F-  123 (374)
T ss_pred             CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C-
Confidence            589999999999888775      25899999982               3456677765532 1235699998755 2 


Q ss_pred             CCCHHHHHHHHHHhcCcCcEEEEE
Q 022592          201 GINFPNYLQEAQRVLKPSGWLLIA  224 (294)
Q Consensus       201 ~~~~~~~l~el~r~LkpgG~l~i~  224 (294)
                       -.+..++..+.+.+++||+|.++
T Consensus       124 -Gs~~~fld~al~~~~~~glL~vT  146 (374)
T TIGR00308       124 -GTPAPFVDSAIQASAERGLLLVT  146 (374)
T ss_pred             -CCcHHHHHHHHHhcccCCEEEEE
Confidence             34568999999999999999997

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.06  E-value=0.028  Score=47.98  Aligned_cols=112  Identities=17%  Similarity=0.189  Sum_probs=74.0

Q ss_pred             CCCCEEEEEcCcccHHHHHhc-----cceEEEeccC-------------CCCcEEEccCCCCC---CCCCCccEEEEccc
Q 022592          140 SPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS-------------NDPSVIACDMSNTP---LNSSSVDVAVFCLS  198 (294)
Q Consensus       140 ~~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~-------------~~~~~~~~d~~~lp---~~~~~fD~Vi~~~~  198 (294)
                      .++.+||-+|+.+|....+++     +.+++|+.|+             .|+--+..|+....   .--+..|+|+.. +
T Consensus        75 ~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~D-V  153 (231)
T COG1889          75 KEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYRHLVEKVDVIYQD-V  153 (231)
T ss_pred             CCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhhhhcccccEEEEe-c
Confidence            467899999999999887776     4799999998             46666677775421   113458887753 2


Q ss_pred             ccCCCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHH----HHHHHHCCCeEEE
Q 022592          199 LMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKF----SKAVCDLGFAPVS  255 (294)
Q Consensus       199 l~~~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~----~~~l~~~Gf~~~~  255 (294)
                      -.-....=+...+...|++||.++++--.+..+.   .-+++++    ..-|++.||++.+
T Consensus       154 AQp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdv---T~dp~~vf~~ev~kL~~~~f~i~e  211 (231)
T COG1889         154 AQPNQAEILADNAEFFLKKGGYVVIAIKARSIDV---TADPEEVFKDEVEKLEEGGFEILE  211 (231)
T ss_pred             CCchHHHHHHHHHHHhcccCCeEEEEEEeecccc---cCCHHHHHHHHHHHHHhcCceeeE
Confidence            1112234566788899999998888643333322   1223332    3457888999887

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=97.04  E-value=0.0072  Score=53.71  Aligned_cols=115  Identities=19%  Similarity=0.344  Sum_probs=80.5

Q ss_pred             HHHHHHHhhccCCCCEEEEEcCcccHHHHHhc------cceEEEeccC----------------CCCcEEEccCCCCCCC
Q 022592          129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----------------NDPSVIACDMSNTPLN  186 (294)
Q Consensus       129 ~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~----------------~~~~~~~~d~~~lp~~  186 (294)
                      ...++..|.-. |+.+|++-|.|+|.++.+++      ++++.+|+..                +++.+..-|+....|.
T Consensus        94 ia~I~~~L~i~-PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~  172 (314)
T KOG2915|consen   94 IAMILSMLEIR-PGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFL  172 (314)
T ss_pred             HHHHHHHhcCC-CCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCcc
Confidence            34566666655 89999999999999888876      4788899876                5778888898876554


Q ss_pred             --CCCccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEE
Q 022592          187 --SSSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVS  255 (294)
Q Consensus       187 --~~~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~  255 (294)
                        +..+|.|+...    ..|..++..++.+||.+|.-++. +.+-..      -.+.-.++|..+||-.+.
T Consensus       173 ~ks~~aDaVFLDl----PaPw~AiPha~~~lk~~g~r~cs-FSPCIE------Qvqrtce~l~~~gf~~i~  232 (314)
T KOG2915|consen  173 IKSLKADAVFLDL----PAPWEAIPHAAKILKDEGGRLCS-FSPCIE------QVQRTCEALRSLGFIEIE  232 (314)
T ss_pred             ccccccceEEEcC----CChhhhhhhhHHHhhhcCceEEe-ccHHHH------HHHHHHHHHHhCCCceEE
Confidence              45688887542    46778888888899998754432 222111      112334678888996555

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.91  E-value=0.0051  Score=53.37  Aligned_cols=82  Identities=17%  Similarity=0.232  Sum_probs=59.5

Q ss_pred             CCCEEEEEcCcccHHHHHhc------cceEEEeccC----------------CCCcEEEccCCC-CC-----CCCCCccE
Q 022592          141 PSLVIADFGCGDARLAKSVK------NKVFSFDLVS----------------NDPSVIACDMSN-TP-----LNSSSVDV  192 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~----------------~~~~~~~~d~~~-lp-----~~~~~fD~  192 (294)
                      ...++||||.=+|+-+..++      ++|+++|+..                ..+.++.++..+ ++     ...++||+
T Consensus        73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDf  152 (237)
T KOG1663|consen   73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDF  152 (237)
T ss_pred             CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeE
Confidence            45699999987777655544      5999999987                345667765533 11     34678999


Q ss_pred             EEEcccccC-CCHHHHHHHHHHhcCcCcEEEEEe
Q 022592          193 AVFCLSLMG-INFPNYLQEAQRVLKPSGWLLIAE  225 (294)
Q Consensus       193 Vi~~~~l~~-~~~~~~l~el~r~LkpgG~l~i~e  225 (294)
                      ++.-   ++ .+......++.+++|+||.|++-.
T Consensus       153 aFvD---adK~nY~~y~e~~l~Llr~GGvi~~DN  183 (237)
T KOG1663|consen  153 AFVD---ADKDNYSNYYERLLRLLRVGGVIVVDN  183 (237)
T ss_pred             EEEc---cchHHHHHHHHHHHhhcccccEEEEec
Confidence            8753   22 355688999999999999999853

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=96.89  E-value=0.016  Score=55.57  Aligned_cols=112  Identities=18%  Similarity=0.280  Sum_probs=77.0

Q ss_pred             HHHHHHhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccC---------------CCCcEEEccCCCCCCC---CC
Q 022592          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS---------------NDPSVIACDMSNTPLN---SS  188 (294)
Q Consensus       130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~---------------~~~~~~~~d~~~lp~~---~~  188 (294)
                      ..+++++... ++.+|||+=||.|.++..|+   .+|+|+|+++               .|+.|..++++.+...   ..
T Consensus       283 ~~a~~~~~~~-~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~  361 (432)
T COG2265         283 ETALEWLELA-GGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGY  361 (432)
T ss_pred             HHHHHHHhhc-CCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccC
Confidence            3455666554 55799999999999999998   4899999998               3678888988875533   24


Q ss_pred             CccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHH---HHHHHHCCCeEEEE
Q 022592          189 SVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKF---SKAVCDLGFAPVSK  256 (294)
Q Consensus       189 ~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~---~~~l~~~Gf~~~~~  256 (294)
                      .+|.|+....=-. -...+++.+.+ ++|-.+++|+-            ++.++   ...|...|+.+..+
T Consensus       362 ~~d~VvvDPPR~G-~~~~~lk~l~~-~~p~~IvYVSC------------NP~TlaRDl~~L~~~gy~i~~v  418 (432)
T COG2265         362 KPDVVVVDPPRAG-ADREVLKQLAK-LKPKRIVYVSC------------NPATLARDLAILASTGYEIERV  418 (432)
T ss_pred             CCCEEEECCCCCC-CCHHHHHHHHh-cCCCcEEEEeC------------CHHHHHHHHHHHHhCCeEEEEE
Confidence            6899886421000 11256665555 57777888863            33444   46788889877664

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=96.86  E-value=0.019  Score=51.28  Aligned_cols=125  Identities=15%  Similarity=0.220  Sum_probs=68.8

Q ss_pred             HHHHHHHhhccCCCCEEEEEcCcccH--HHHHh----c--cceEEEeccC-------------CC--CcEEEccCCCCC-
Q 022592          129 VNIIVKWLKDHSPSLVIADFGCGDAR--LAKSV----K--NKVFSFDLVS-------------ND--PSVIACDMSNTP-  184 (294)
Q Consensus       129 ~~~~~~~l~~~~~~~~VLDiGcG~G~--~~~~l----~--~~v~gvD~s~-------------~~--~~~~~~d~~~lp-  184 (294)
                      +.+.+.++.....-...||||||--.  ....+    .  .+|+-+|..+             ++  ..++.+|+.+.. 
T Consensus        56 l~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~  135 (267)
T PF04672_consen   56 LRRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEA  135 (267)
T ss_dssp             HHHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHH
T ss_pred             HHHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHH
Confidence            34566776654122469999999432  22222    2  4899999876             34  678999987732 


Q ss_pred             -C----CCCCcc-----EEEEcccccCC----CHHHHHHHHHHhcCcCcEEEEEeecCCCCCC---------------CC
Q 022592          185 -L----NSSSVD-----VAVFCLSLMGI----NFPNYLQEAQRVLKPSGWLLIAEVKSRFDPN---------------TG  235 (294)
Q Consensus       185 -~----~~~~fD-----~Vi~~~~l~~~----~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~---------------~~  235 (294)
                       +    -.+-+|     .|++..+|||.    ++..+++.+...|.||.+|+|+-......+.               ..
T Consensus       136 iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p~~~~~~~~~~~~~~~~~~  215 (267)
T PF04672_consen  136 ILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAPERAEALEAVYAQAGSPGR  215 (267)
T ss_dssp             HHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSHHHHHHHHHHHHHCCS---
T ss_pred             HhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCHHHHHHHHHHHHcCCCCce
Confidence             0    012233     66788889883    6889999999999999999998765543221               11


Q ss_pred             CCCHHHHHHHHHHCCCeEEE
Q 022592          236 GADPNKFSKAVCDLGFAPVS  255 (294)
Q Consensus       236 ~~~~~~~~~~l~~~Gf~~~~  255 (294)
                      ..+.+++..+|.  ||++++
T Consensus       216 ~Rs~~ei~~~f~--g~elve  233 (267)
T PF04672_consen  216 PRSREEIAAFFD--GLELVE  233 (267)
T ss_dssp             -B-HHHHHHCCT--TSEE-T
T ss_pred             ecCHHHHHHHcC--CCccCC
Confidence            136666666666  666654

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=96.86  E-value=0.027  Score=48.64  Aligned_cols=130  Identities=16%  Similarity=0.171  Sum_probs=84.8

Q ss_pred             HHHHHHHhhccCCCCEEEEEcCcccHHHHHhc-----cceEEEeccC----------------CCCcEEEccCCCCCCCC
Q 022592          129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS----------------NDPSVIACDMSNTPLNS  187 (294)
Q Consensus       129 ~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~----------------~~~~~~~~d~~~lp~~~  187 (294)
                      +..+..++.   .+..++||||--|++..+|.     ..+++.|+++                +.+....+|....--++
T Consensus         7 L~~va~~V~---~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~   83 (226)
T COG2384           7 LTTVANLVK---QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELE   83 (226)
T ss_pred             HHHHHHHHH---cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCcc
Confidence            344555655   34459999999999999886     3789999998                24455556653322334


Q ss_pred             CCccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEE---EeccCCeEE
Q 022592          188 SSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVS---KDFSNKMFI  264 (294)
Q Consensus       188 ~~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~---~~~~~~~f~  264 (294)
                      +.+|+|+...+ -..-....|.+-...|+-=-.+++-   +       ......+.++|...+|.+..   +......|.
T Consensus        84 d~~d~ivIAGM-GG~lI~~ILee~~~~l~~~~rlILQ---P-------n~~~~~LR~~L~~~~~~I~~E~ileE~~kiYE  152 (226)
T COG2384          84 DEIDVIVIAGM-GGTLIREILEEGKEKLKGVERLILQ---P-------NIHTYELREWLSANSYEIKAETILEEDGKIYE  152 (226)
T ss_pred             CCcCEEEEeCC-cHHHHHHHHHHhhhhhcCcceEEEC---C-------CCCHHHHHHHHHhCCceeeeeeeecccCeEEE
Confidence            57999886543 2233445666666666533244442   1       12458899999999999987   444455677


Q ss_pred             EEEEEECC
Q 022592          265 MFYFKKKE  272 (294)
Q Consensus       265 ~i~~~k~~  272 (294)
                      ++++.+..
T Consensus       153 Ilv~e~~~  160 (226)
T COG2384         153 ILVVEKSS  160 (226)
T ss_pred             EEEEecCC
Confidence            77777764

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=96.86  E-value=0.0015  Score=59.41  Aligned_cols=70  Identities=17%  Similarity=0.240  Sum_probs=51.3

Q ss_pred             HHHHHHHhhccCCCCEEEEEcCcccHHHHHhc------cceEEEeccC-------------CCCcEEEccCCCCC--CCC
Q 022592          129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS-------------NDPSVIACDMSNTP--LNS  187 (294)
Q Consensus       129 ~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~-------------~~~~~~~~d~~~lp--~~~  187 (294)
                      +..+++.+... ++..+||.+||.|.++..++      ..|+|+|.++             .++.++.+|+.++.  ++.
T Consensus         8 l~Evl~~L~~~-pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l~~   86 (296)
T PRK00050          8 LDEVVDALAIK-PDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVLAE   86 (296)
T ss_pred             HHHHHHhhCCC-CCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHHHc
Confidence            35567777655 66799999999999988776      3799999987             25778888877643  112


Q ss_pred             --CCccEEEEcccc
Q 022592          188 --SSVDVAVFCLSL  199 (294)
Q Consensus       188 --~~fD~Vi~~~~l  199 (294)
                        .++|.|++....
T Consensus        87 ~~~~vDgIl~DLGv  100 (296)
T PRK00050         87 GLGKVDGILLDLGV  100 (296)
T ss_pred             CCCccCEEEECCCc
Confidence              278999876555

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=96.86  E-value=0.0023  Score=53.88  Aligned_cols=80  Identities=15%  Similarity=0.175  Sum_probs=61.3

Q ss_pred             CCEEEEEcCcccHHHHHhc---cceEEEeccC---------------CCCcEEEccCCCCCCCCCCccEEEEcccccC--
Q 022592          142 SLVIADFGCGDARLAKSVK---NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMG--  201 (294)
Q Consensus       142 ~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~---------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~--  201 (294)
                      ...+.|+|+|+|.++...+   .+|++++..+               .+++++.+|+....|  ...|+|+|-. |.-  
T Consensus        33 ~d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvicEm-lDTaL  109 (252)
T COG4076          33 EDTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVICEM-LDTAL  109 (252)
T ss_pred             hhceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc--cccceeHHHH-hhHHh
Confidence            3589999999999887665   5899999887               367789999998887  3469887642 221  


Q ss_pred             --CCHHHHHHHHHHhcCcCcEEEEE
Q 022592          202 --INFPNYLQEAQRVLKPSGWLLIA  224 (294)
Q Consensus       202 --~~~~~~l~el~r~LkpgG~l~i~  224 (294)
                        .....+++.+...|+-.|.++-.
T Consensus       110 i~E~qVpV~n~vleFLr~d~tiiPq  134 (252)
T COG4076         110 IEEKQVPVINAVLEFLRYDPTIIPQ  134 (252)
T ss_pred             hcccccHHHHHHHHHhhcCCccccH
Confidence              24457888888899999888764

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=96.84  E-value=0.0047  Score=53.07  Aligned_cols=104  Identities=12%  Similarity=0.187  Sum_probs=71.8

Q ss_pred             hhccCCCcHHHHHHHHhhccCCCCEEEEEcCcccHHHHHhcc----ceEEEeccC--------------CCCcEEEccCC
Q 022592          120 QMSHWPELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVKN----KVFSFDLVS--------------NDPSVIACDMS  181 (294)
Q Consensus       120 ~~~~~~~~~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~~----~v~gvD~s~--------------~~~~~~~~d~~  181 (294)
                      .+..|....++.+.+.+.  ..+.+||.||-|-|.....+.+    +-+.++..+              +++..+.+--+
T Consensus        82 VMm~WEtpiMha~A~ai~--tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~We  159 (271)
T KOG1709|consen   82 VMMRWETPIMHALAEAIS--TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWE  159 (271)
T ss_pred             hhhhhhhHHHHHHHHHHh--hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchH
Confidence            355666666666565555  3577999999999998877762    445566555              34444444222


Q ss_pred             CC--CCCCCCccEEEEcccccC-CCHHHHHHHHHHhcCcCcEEEEEe
Q 022592          182 NT--PLNSSSVDVAVFCLSLMG-INFPNYLQEAQRVLKPSGWLLIAE  225 (294)
Q Consensus       182 ~l--p~~~~~fD~Vi~~~~l~~-~~~~~~l~el~r~LkpgG~l~i~e  225 (294)
                      +.  .++++.||-|+....-++ .+...+.+.+.|+|||+|++-...
T Consensus       160 Dvl~~L~d~~FDGI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~SyfN  206 (271)
T KOG1709|consen  160 DVLNTLPDKHFDGIYYDTYSELYEDLRHFHQHVVRLLKPEGVFSYFN  206 (271)
T ss_pred             hhhccccccCcceeEeechhhHHHHHHHHHHHHhhhcCCCceEEEec
Confidence            21  256888999987665555 478889999999999999988753

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=96.83  E-value=0.0084  Score=59.03  Aligned_cols=103  Identities=14%  Similarity=0.219  Sum_probs=62.3

Q ss_pred             CCEEEEEcCcccHHHHHhc-------------cceEEEeccCC---------------CCcEEEccCCCC-----CCCCC
Q 022592          142 SLVIADFGCGDARLAKSVK-------------NKVFSFDLVSN---------------DPSVIACDMSNT-----PLNSS  188 (294)
Q Consensus       142 ~~~VLDiGcG~G~~~~~l~-------------~~v~gvD~s~~---------------~~~~~~~d~~~l-----p~~~~  188 (294)
                      ..+|||.|||+|.++..++             ..++|+|+++.               .+.+...|....     .-..+
T Consensus        32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~~  111 (524)
T TIGR02987        32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYLD  111 (524)
T ss_pred             ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeecccccccccccccccC
Confidence            3589999999999887664             14688998761               122333332211     11125


Q ss_pred             CccEEEEcccccCC--C---------------------------------------------HHHHH-HHHHHhcCcCcE
Q 022592          189 SVDVAVFCLSLMGI--N---------------------------------------------FPNYL-QEAQRVLKPSGW  220 (294)
Q Consensus       189 ~fD~Vi~~~~l~~~--~---------------------------------------------~~~~l-~el~r~LkpgG~  220 (294)
                      .||+||.+.-..-.  +                                             ...++ ..+.++|+|||.
T Consensus       112 ~fD~IIgNPPy~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~~f~~~~~~lL~~~G~  191 (524)
T TIGR02987       112 LFDIVITNPPYGRLKPDKKELTNIETLEYEKYIDFLKEFDDLLSRVLPYSDPIRKYAGVGTEYSRVFEEISLEIANKNGY  191 (524)
T ss_pred             cccEEEeCCCccccCcchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcchhhhhcccCCcccHHHHHHHHHHHHhcCCCCE
Confidence            79999987665421  0                                             00133 557889999999


Q ss_pred             EEEEeecCCCCCCCCCCCHHHHHHHHHH
Q 022592          221 LLIAEVKSRFDPNTGGADPNKFSKAVCD  248 (294)
Q Consensus       221 l~i~e~~~~~~~~~~~~~~~~~~~~l~~  248 (294)
                      +.++...+....    .....+.+.+-+
T Consensus       192 ~~~I~P~s~l~~----~~~~~lR~~ll~  215 (524)
T TIGR02987       192 VSIISPASWLGD----KTGENLREYIFN  215 (524)
T ss_pred             EEEEEChHHhcC----ccHHHHHHHHHh
Confidence            998865554432    233566655443

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=96.73  E-value=0.0058  Score=62.27  Aligned_cols=84  Identities=11%  Similarity=0.045  Sum_probs=58.1

Q ss_pred             CCCEEEEEcCcccHHHHHhc-----------------------------------------------cceEEEeccC---
Q 022592          141 PSLVIADFGCGDARLAKSVK-----------------------------------------------NKVFSFDLVS---  170 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~-----------------------------------------------~~v~gvD~s~---  170 (294)
                      ++..++|.+||+|.++...+                                               ..++|+|+++   
T Consensus       190 ~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av  269 (702)
T PRK11783        190 EGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVI  269 (702)
T ss_pred             CCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHH
Confidence            46789999999999876542                                               0379999997   


Q ss_pred             -------------CCCcEEEccCCCCCCC--CCCccEEEEcccccC-C----CHHHHHHHHHHhc---CcCcEEEEE
Q 022592          171 -------------NDPSVIACDMSNTPLN--SSSVDVAVFCLSLMG-I----NFPNYLQEAQRVL---KPSGWLLIA  224 (294)
Q Consensus       171 -------------~~~~~~~~d~~~lp~~--~~~fD~Vi~~~~l~~-~----~~~~~l~el~r~L---kpgG~l~i~  224 (294)
                                   ..+.+..+|+.+++.+  .++||+|+++.-... .    +...+..++.+.|   .+|+.+++.
T Consensus       270 ~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~ll  346 (702)
T PRK11783        270 QAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNAALF  346 (702)
T ss_pred             HHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEEEE
Confidence                         2467889999887654  357999999877643 1    2233333333333   488888775

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=96.66  E-value=0.0066  Score=53.96  Aligned_cols=57  Identities=25%  Similarity=0.327  Sum_probs=46.1

Q ss_pred             CCCEEEEEcCcccHHHHHhc---cceEEEeccC----------------CCCcEEEccCCCCCCCCCCccEEEEcccc
Q 022592          141 PSLVIADFGCGDARLAKSVK---NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSVDVAVFCLSL  199 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~----------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l  199 (294)
                      +.+.|||||.|||.++..+.   ..|+++++.+                ...+++.+|+...++|  .||++|++.-.
T Consensus        58 ~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P--~fd~cVsNlPy  133 (315)
T KOG0820|consen   58 PTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLP--RFDGCVSNLPY  133 (315)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCc--ccceeeccCCc
Confidence            66799999999999998886   5899999887                3567899999876654  48999985444

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.62  E-value=0.0018  Score=53.14  Aligned_cols=107  Identities=21%  Similarity=0.286  Sum_probs=69.8

Q ss_pred             CCEEEEEcCcccHHHH-Hhc-----cceEEEeccCCCC-------------cEEEccCCC-------CCCCCCCccEEEE
Q 022592          142 SLVIADFGCGDARLAK-SVK-----NKVFSFDLVSNDP-------------SVIACDMSN-------TPLNSSSVDVAVF  195 (294)
Q Consensus       142 ~~~VLDiGcG~G~~~~-~l~-----~~v~gvD~s~~~~-------------~~~~~d~~~-------lp~~~~~fD~Vi~  195 (294)
                      +..||++|.|--.++. .++     ..|+..|-+...+             .+..|.+..       .......||+|++
T Consensus        30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIla  109 (201)
T KOG3201|consen   30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILA  109 (201)
T ss_pred             HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEe
Confidence            4579999999544443 333     2566677655111             111111110       1123458999999


Q ss_pred             cccccCC-CHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEE
Q 022592          196 CLSLMGI-NFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVS  255 (294)
Q Consensus       196 ~~~l~~~-~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~  255 (294)
                      ..-+.+. .....++.|.++|+|.|..++....       .+-+.+.|.+.....||.+..
T Consensus       110 ADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPR-------Rg~sL~kF~de~~~~gf~v~l  163 (201)
T KOG3201|consen  110 ADCLFFDEHHESLVDTIKSLLRPSGRALLFSPR-------RGQSLQKFLDEVGTVGFTVCL  163 (201)
T ss_pred             ccchhHHHHHHHHHHHHHHHhCcccceeEecCc-------ccchHHHHHHHHHhceeEEEe
Confidence            8887764 4567888999999999997775322       234788999999999998876

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=96.56  E-value=0.018  Score=50.77  Aligned_cols=133  Identities=16%  Similarity=0.221  Sum_probs=76.7

Q ss_pred             HHHHHHHhhcc-CCCCEEEEEcCcccHHHHHhc-----cceEEEeccC--------------CCCcEEEccCCCCCCCCC
Q 022592          129 VNIIVKWLKDH-SPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS--------------NDPSVIACDMSNTPLNSS  188 (294)
Q Consensus       129 ~~~~~~~l~~~-~~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~--------------~~~~~~~~d~~~lp~~~~  188 (294)
                      ++.+.+.+... ++..+|+|||||--.++....     ..++|+|+..              ....+...|+..-+ +..
T Consensus        92 Ld~fY~~if~~~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~-~~~  170 (251)
T PF07091_consen   92 LDEFYDEIFGRIPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDP-PKE  170 (251)
T ss_dssp             HHHHHHHHCCCS---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSH-TTS
T ss_pred             HHHHHHHHHhcCCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccC-CCC
Confidence            44455555443 345799999999998887654     2789999997              35567777887654 356


Q ss_pred             CccEEEEcccccCCCH---HHHHHHHHHhcCcCcEEEEEeecCCCCCCCCC---CCHHHHHHHHHHCCCeEEEEeccCCe
Q 022592          189 SVDVAVFCLSLMGINF---PNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGG---ADPNKFSKAVCDLGFAPVSKDFSNKM  262 (294)
Q Consensus       189 ~fD~Vi~~~~l~~~~~---~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~---~~~~~~~~~l~~~Gf~~~~~~~~~~~  262 (294)
                      ..|+.+..=+++-.+.   ...++-+.++=.|  .++|+...........+   .....|..++...|+.+....+.+..
T Consensus       171 ~~DlaLllK~lp~le~q~~g~g~~ll~~~~~~--~~vVSfPtrSL~gR~~gm~~~y~~~fe~~~~~~~~~~~~~~~~~El  248 (251)
T PF07091_consen  171 PADLALLLKTLPCLERQRRGAGLELLDALRSP--HVVVSFPTRSLGGRNKGMEQTYSAWFEALAAERGWIVDRLTFGNEL  248 (251)
T ss_dssp             EESEEEEET-HHHHHHHSTTHHHHHHHHSCES--EEEEEEES-------TTHHHCHHHHHHHHCCTTCEEEEEEEETTEE
T ss_pred             CcchhhHHHHHHHHHHHhcchHHHHHHHhCCC--eEEEeccccccccCccccccCHHHHHHHhcccCCceeeeeecccce
Confidence            6899998777665322   2223323332222  45555433333322222   23457788888899998888888875


Q ss_pred             EE
Q 022592          263 FI  264 (294)
Q Consensus       263 f~  264 (294)
                      ++
T Consensus       249 vy  250 (251)
T PF07091_consen  249 VY  250 (251)
T ss_dssp             EE
T ss_pred             ee
Confidence            54

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=96.56  E-value=0.0058  Score=54.67  Aligned_cols=86  Identities=16%  Similarity=0.145  Sum_probs=60.1

Q ss_pred             HHHHHHHhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccC-------------CCCcEEEccCCCCCCCC---CC
Q 022592          129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS-------------NDPSVIACDMSNTPLNS---SS  189 (294)
Q Consensus       129 ~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~-------------~~~~~~~~d~~~lp~~~---~~  189 (294)
                      .+.+++.+... ++..|||||+|+|.++..|.   ..++++|+.+             .++.++.+|+..+..+.   ..
T Consensus        19 ~~~Iv~~~~~~-~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~~~~~   97 (262)
T PF00398_consen   19 ADKIVDALDLS-EGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYDLLKNQ   97 (262)
T ss_dssp             HHHHHHHHTCG-TTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGGHCSSS
T ss_pred             HHHHHHhcCCC-CCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhhhcccceeeecchhccccHHhhcCC
Confidence            45567766654 67799999999999999887   5899999886             47889999999877654   34


Q ss_pred             ccEEEEcccccCCCHHHHHHHHHHhcCc
Q 022592          190 VDVAVFCLSLMGINFPNYLQEAQRVLKP  217 (294)
Q Consensus       190 fD~Vi~~~~l~~~~~~~~l~el~r~Lkp  217 (294)
                      ...|+++...  .--..++..+...-+.
T Consensus        98 ~~~vv~NlPy--~is~~il~~ll~~~~~  123 (262)
T PF00398_consen   98 PLLVVGNLPY--NISSPILRKLLELYRF  123 (262)
T ss_dssp             EEEEEEEETG--TGHHHHHHHHHHHGGG
T ss_pred             ceEEEEEecc--cchHHHHHHHhhcccc
Confidence            5666766443  2223455555554344

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=96.49  E-value=0.023  Score=52.56  Aligned_cols=127  Identities=13%  Similarity=0.111  Sum_probs=84.0

Q ss_pred             CCEEEEEcCcccHHHHHhc-----cceEEEeccC----------------------CCCcEEEccCCCC-CCCCCCccEE
Q 022592          142 SLVIADFGCGDARLAKSVK-----NKVFSFDLVS----------------------NDPSVIACDMSNT-PLNSSSVDVA  193 (294)
Q Consensus       142 ~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~----------------------~~~~~~~~d~~~l-p~~~~~fD~V  193 (294)
                      ..+||-+|.|.|..++.+.     .+++-+|+.+                      ++++++..|+.+. .-..+.||+|
T Consensus       290 a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~v  369 (508)
T COG4262         290 ARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVV  369 (508)
T ss_pred             cceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEE
Confidence            3589999999999999886     4889999887                      3455666666552 2234579999


Q ss_pred             EEcccccCC------CHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEE---EeccCCeEE
Q 022592          194 VFCLSLMGI------NFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVS---KDFSNKMFI  264 (294)
Q Consensus       194 i~~~~l~~~------~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~---~~~~~~~f~  264 (294)
                      |....=-..      --.++..-+.+.|+++|.+++---...+.+. ..   =.+.+-++++||.+.-   .-.....|.
T Consensus       370 IVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp~-vf---w~i~aTik~AG~~~~Pyhv~VPTFGeWG  445 (508)
T COG4262         370 IVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTPR-VF---WRIDATIKSAGYRVWPYHVHVPTFGEWG  445 (508)
T ss_pred             EEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCccCCc-ee---eeehhHHHhCcceeeeeEEecCcccccc
Confidence            875432221      1247888899999999999985322222221 11   2345678999998765   223456677


Q ss_pred             EEEEEECC
Q 022592          265 MFYFKKKE  272 (294)
Q Consensus       265 ~i~~~k~~  272 (294)
                      ++.+.+..
T Consensus       446 f~l~~~~~  453 (508)
T COG4262         446 FILAAPGD  453 (508)
T ss_pred             eeeccccc
Confidence            77776643

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=96.48  E-value=0.011  Score=55.33  Aligned_cols=51  Identities=20%  Similarity=0.421  Sum_probs=34.8

Q ss_pred             HHHHHHhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccC---------------CCCcEEEccCCC
Q 022592          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS---------------NDPSVIACDMSN  182 (294)
Q Consensus       130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~---------------~~~~~~~~d~~~  182 (294)
                      +.+++++... ++ .|||+-||.|.++..++   ..|+|+|+++               .+++|+.+++++
T Consensus       187 ~~~~~~l~~~-~~-~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~  255 (352)
T PF05958_consen  187 EQALEWLDLS-KG-DVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAED  255 (352)
T ss_dssp             HHHHHHCTT--TT-EEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHH
T ss_pred             HHHHHHhhcC-CC-cEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccc
Confidence            3455666543 33 89999999999999998   4899999987               467788776543

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=96.44  E-value=0.00072  Score=51.59  Aligned_cols=80  Identities=16%  Similarity=0.173  Sum_probs=38.3

Q ss_pred             EEEcCcccHHHHHhcc--------ceEEEeccC---------------CCCcEEEccCCCC--CCCCCCccEEEEccccc
Q 022592          146 ADFGCGDARLAKSVKN--------KVFSFDLVS---------------NDPSVIACDMSNT--PLNSSSVDVAVFCLSLM  200 (294)
Q Consensus       146 LDiGcG~G~~~~~l~~--------~v~gvD~s~---------------~~~~~~~~d~~~l--p~~~~~fD~Vi~~~~l~  200 (294)
                      ||||+..|..+..++.        +++++|..+               .+++++.++....  .++.++||+|+.-..-.
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~H~   80 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGDHS   80 (106)
T ss_dssp             --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred             CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCCCC
Confidence            6899999987776651        689999887               2455666666432  12257899988765321


Q ss_pred             CCCHHHHHHHHHHhcCcCcEEEEEe
Q 022592          201 GINFPNYLQEAQRVLKPSGWLLIAE  225 (294)
Q Consensus       201 ~~~~~~~l~el~r~LkpgG~l~i~e  225 (294)
                      +......+..+.+.|+|||.+++-+
T Consensus        81 ~~~~~~dl~~~~~~l~~ggviv~dD  105 (106)
T PF13578_consen   81 YEAVLRDLENALPRLAPGGVIVFDD  105 (106)
T ss_dssp             HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred             HHHHHHHHHHHHHHcCCCeEEEEeC
Confidence            2345677888999999999988744

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=96.43  E-value=0.0076  Score=51.08  Aligned_cols=79  Identities=13%  Similarity=0.148  Sum_probs=53.9

Q ss_pred             CCCEEEEEcCcccHHHHHhc----cceEEEeccC--------------CCCcEEEccCCCCCCCCCCccEEEEcccccC-
Q 022592          141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVS--------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMG-  201 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~--------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~-  201 (294)
                      .+.+|||+|+|+|..+...+    ..|++.|+.+              .++.++..|+-.   .+..||+|+...+++. 
T Consensus        79 rgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g---~~~~~Dl~LagDlfy~~  155 (218)
T COG3897          79 RGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG---SPPAFDLLLAGDLFYNH  155 (218)
T ss_pred             ccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccceeEEeeccccC---CCcceeEEEeeceecCc
Confidence            46799999999999777664    3677777765              133455555543   4567999999888875 


Q ss_pred             CCHHHHHHHHHHhcCcCcEEEE
Q 022592          202 INFPNYLQEAQRVLKPSGWLLI  223 (294)
Q Consensus       202 ~~~~~~l~el~r~LkpgG~l~i  223 (294)
                      ..-.+++. +.+.|+..|..++
T Consensus       156 ~~a~~l~~-~~~~l~~~g~~vl  176 (218)
T COG3897         156 TEADRLIP-WKDRLAEAGAAVL  176 (218)
T ss_pred             hHHHHHHH-HHHHHHhCCCEEE
Confidence            44456666 6666666665555

>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.99  E-value=0.015  Score=50.43  Aligned_cols=82  Identities=17%  Similarity=0.229  Sum_probs=62.2

Q ss_pred             CEEEEEcCcccHHHHHhcc--------------ceEEEeccC----CCCcEEEccCCCCC--------CCCCCccEEEEc
Q 022592          143 LVIADFGCGDARLAKSVKN--------------KVFSFDLVS----NDPSVIACDMSNTP--------LNSSSVDVAVFC  196 (294)
Q Consensus       143 ~~VLDiGcG~G~~~~~l~~--------------~v~gvD~s~----~~~~~~~~d~~~lp--------~~~~~fD~Vi~~  196 (294)
                      .+++|+.+.+|.|+..|..              .+++||+-+    +.+.-+++|+....        |..+..|+|+|.
T Consensus        43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaPI~GV~qlq~DIT~~stae~Ii~hfggekAdlVvcD  122 (294)
T KOG1099|consen   43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAPIEGVIQLQGDITSASTAEAIIEHFGGEKADLVVCD  122 (294)
T ss_pred             hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCccCceEEeecccCCHhHHHHHHHHhCCCCccEEEeC
Confidence            4799999999999988851              389999987    56677888987743        556789999997


Q ss_pred             ccccC-----CC-------HHHHHHHHHHhcCcCcEEEEE
Q 022592          197 LSLMG-----IN-------FPNYLQEAQRVLKPSGWLLIA  224 (294)
Q Consensus       197 ~~l~~-----~~-------~~~~l~el~r~LkpgG~l~i~  224 (294)
                      .+-.-     .|       ...+|.-...+|+|||.|+--
T Consensus       123 GAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaK  162 (294)
T KOG1099|consen  123 GAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAK  162 (294)
T ss_pred             CCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehh
Confidence            66432     22       235666677899999999874

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=95.91  E-value=0.0031  Score=52.26  Aligned_cols=56  Identities=20%  Similarity=0.283  Sum_probs=37.2

Q ss_pred             EEEEEcCcccHHHHHhc---cceEEEeccC----------------CCCcEEEccCCCCC--CCCCC-ccEEEEcccc
Q 022592          144 VIADFGCGDARLAKSVK---NKVFSFDLVS----------------NDPSVIACDMSNTP--LNSSS-VDVAVFCLSL  199 (294)
Q Consensus       144 ~VLDiGcG~G~~~~~l~---~~v~gvD~s~----------------~~~~~~~~d~~~lp--~~~~~-fD~Vi~~~~l  199 (294)
                      .|+|+.||.|..+..++   ..|+++|+++                +++.++.+|+.++.  +.... +|+|+++...
T Consensus         2 ~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSPPW   79 (163)
T PF09445_consen    2 TVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSPPW   79 (163)
T ss_dssp             EEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE---B
T ss_pred             EEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECCCC
Confidence            69999999999999988   4899999997                47889999987642  22222 7999976543

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]

Probab=95.68  E-value=0.033  Score=53.86  Aligned_cols=123  Identities=24%  Similarity=0.345  Sum_probs=82.0

Q ss_pred             HHHHHhcChhhHHHHHHhHHhhhccCCCcHHHHHHHHhhccCC--CCEEEEEcCcccHHHHHhc-------c--ceEEEe
Q 022592           99 ALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIVKWLKDHSP--SLVIADFGCGDARLAKSVK-------N--KVFSFD  167 (294)
Q Consensus        99 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~VLDiGcG~G~~~~~l~-------~--~v~gvD  167 (294)
                      ..+.|..++-.|+.|.+...           ..+++..+....  ..+|+=+|+|-|.+.....       .  ++++++
T Consensus       334 TYetFEkD~VKY~~Yq~Ai~-----------~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavE  402 (649)
T KOG0822|consen  334 TYETFEKDPVKYDQYQQAIL-----------KALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVE  402 (649)
T ss_pred             hhhhhhccchHHHHHHHHHH-----------HHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEe
Confidence            34567777777777765332           223333332212  3468899999998765443       1  678888


Q ss_pred             ccC---------------CCCcEEEccCCCCCCCCCCccEEEEcccccC-C--CHHHHHHHHHHhcCcCcEEEEEeecCC
Q 022592          168 LVS---------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMG-I--NFPNYLQEAQRVLKPSGWLLIAEVKSR  229 (294)
Q Consensus       168 ~s~---------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~-~--~~~~~l~el~r~LkpgG~l~i~e~~~~  229 (294)
                      -++               .++.++.+|+..++.+..+.|++|+-..-.+ .  --+++|..+.+.|||.|+.+=....+.
T Consensus       403 KNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSELLGSFGDNELSPECLDG~q~fLkpdgIsIP~sYtSy  482 (649)
T KOG0822|consen  403 KNPNAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVSELLGSFGDNELSPECLDGAQKFLKPDGISIPSSYTSY  482 (649)
T ss_pred             cCcchhhhhhhhchhhhcCeeEEEeccccccCCchhhccchHHHhhccccCccCCHHHHHHHHhhcCCCceEccchhhhh
Confidence            776               4678899999998865688999886433222 1  236899999999999998776655444


Q ss_pred             CCC
Q 022592          230 FDP  232 (294)
Q Consensus       230 ~~~  232 (294)
                      ..|
T Consensus       483 i~P  485 (649)
T KOG0822|consen  483 IAP  485 (649)
T ss_pred             hcc
Confidence            433

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=95.57  E-value=0.072  Score=45.55  Aligned_cols=82  Identities=20%  Similarity=0.311  Sum_probs=47.4

Q ss_pred             CEEEEEcCcccHHHHHhcc-----ceEEEeccC----------------------CCCcEEEccCCC-CC--CCCCCccE
Q 022592          143 LVIADFGCGDARLAKSVKN-----KVFSFDLVS----------------------NDPSVIACDMSN-TP--LNSSSVDV  192 (294)
Q Consensus       143 ~~VLDiGcG~G~~~~~l~~-----~v~gvD~s~----------------------~~~~~~~~d~~~-lp--~~~~~fD~  192 (294)
                      ..+.|||||.|.++..|+.     .+.|++|-.                      .++.+...+... +|  |..++.+-
T Consensus        62 vefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLsk  141 (249)
T KOG3115|consen   62 VEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLSK  141 (249)
T ss_pred             ceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhccccc
Confidence            4799999999999999873     567777643                      233333333321 22  12222222


Q ss_pred             EEEcccccCC---------CHHHHHHHHHHhcCcCcEEEEE
Q 022592          193 AVFCLSLMGI---------NFPNYLQEAQRVLKPSGWLLIA  224 (294)
Q Consensus       193 Vi~~~~l~~~---------~~~~~l~el~r~LkpgG~l~i~  224 (294)
                      .++.+---|+         --...+.+..-+|++||.++.+
T Consensus       142 mff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~yti  182 (249)
T KOG3115|consen  142 MFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTI  182 (249)
T ss_pred             ceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEE
Confidence            1211111111         1236788888999999999886

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=95.53  E-value=0.014  Score=47.12  Aligned_cols=98  Identities=21%  Similarity=0.294  Sum_probs=54.4

Q ss_pred             ceEEEeccC----------------CCCcEEEccCCCCC--CCCCCccEEEEcccccC-C------CH---HHHHHHHHH
Q 022592          162 KVFSFDLVS----------------NDPSVIACDMSNTP--LNSSSVDVAVFCLSLMG-I------NF---PNYLQEAQR  213 (294)
Q Consensus       162 ~v~gvD~s~----------------~~~~~~~~d~~~lp--~~~~~fD~Vi~~~~l~~-~------~~---~~~l~el~r  213 (294)
                      +|+|+|+-+                .++.++..+-+++.  ++.+.+|+|+++...-- .      .+   ..+++.+.+
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~   80 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALE   80 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHH
T ss_pred             CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHH
Confidence            478888876                35677776665544  23357999999877652 1      22   378889999


Q ss_pred             hcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEEecc
Q 022592          214 VLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSKDFS  259 (294)
Q Consensus       214 ~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~  259 (294)
                      +|+|||.+.++-...--......-...++.+.|.+..|.+....+.
T Consensus        81 lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~L~~~~~~V~~~~~~  126 (140)
T PF06962_consen   81 LLKPGGIITIVVYPGHPGGKEESEAVEEFLASLDQKEFNVLKYQFI  126 (140)
T ss_dssp             HEEEEEEEEEEE--STCHHHHHHHHHHHHHHTS-TTTEEEEEEEES
T ss_pred             hhccCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCcceEEEEEEEcc
Confidence            9999999999753211100000012234444455566777775543

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=95.48  E-value=0.14  Score=43.97  Aligned_cols=114  Identities=13%  Similarity=0.119  Sum_probs=60.8

Q ss_pred             CCCEEEEEcCcccHHHHHhc---------cceEEEeccC--------------CCCcEEEccCCCCC----C--CCCCcc
Q 022592          141 PSLVIADFGCGDARLAKSVK---------NKVFSFDLVS--------------NDPSVIACDMSNTP----L--NSSSVD  191 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~---------~~v~gvD~s~--------------~~~~~~~~d~~~lp----~--~~~~fD  191 (294)
                      ....|+|+|.-.|.-+..++         .+|+|+|+.-              ++++++.+|..+..    .  -....+
T Consensus        32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~  111 (206)
T PF04989_consen   32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPH  111 (206)
T ss_dssp             --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----S
T ss_pred             CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCC
Confidence            34599999999887665443         4899999932              47889999876532    1  111234


Q ss_pred             EEEEcccccC--CCHHHHHHHHHHhcCcCcEEEEEeecC-----C-CC--CCCC-CCCHHHHHHHHHHCC-CeEE
Q 022592          192 VAVFCLSLMG--INFPNYLQEAQRVLKPSGWLLIAEVKS-----R-FD--PNTG-GADPNKFSKAVCDLG-FAPV  254 (294)
Q Consensus       192 ~Vi~~~~l~~--~~~~~~l~el~r~LkpgG~l~i~e~~~-----~-~~--~~~~-~~~~~~~~~~l~~~G-f~~~  254 (294)
                      -++.+.--+|  .+..+.|+....++.+|+++++-|...     . +.  +... .-....+.+.|.+.. |.+.
T Consensus       112 ~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IVeDt~~~~~~~~~~~~~~w~~g~~p~~av~~fL~~~~~f~iD  186 (206)
T PF04989_consen  112 PVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIVEDTIIEDWPESWFPDRPWGPGNNPKTAVKEFLAEHPDFEID  186 (206)
T ss_dssp             SEEEEESS----SSHHHHHHHHHHT--TT-EEEETSHHHHHHHHS-------------HHHHHHHHHTTTTEEEE
T ss_pred             ceEEEECCCccHHHHHHHHHHhCccCCCCCEEEEEeccccccccccccccchhhhhHHHHHHHHHHHHCCCcEec
Confidence            3333333444  578889999999999999999965221     1 00  0011 123466777777765 5443

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=95.36  E-value=0.028  Score=45.31  Aligned_cols=31  Identities=19%  Similarity=0.503  Sum_probs=26.3

Q ss_pred             CCCCEEEEEcCcccHHHHHhcc---------ceEEEeccC
Q 022592          140 SPSLVIADFGCGDARLAKSVKN---------KVFSFDLVS  170 (294)
Q Consensus       140 ~~~~~VLDiGcG~G~~~~~l~~---------~v~gvD~s~  170 (294)
                      .+...|+|+|||.|+++..|+.         .|+|+|.++
T Consensus        24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~   63 (141)
T PF13679_consen   24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNE   63 (141)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCc
Confidence            3567999999999999887764         789999887

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=95.31  E-value=0.029  Score=50.81  Aligned_cols=111  Identities=17%  Similarity=0.220  Sum_probs=72.1

Q ss_pred             CCCCEEEEEcCcccHHHHHhc------cceEEEeccC---------------CCCcEEEccCCCC-C-CCCCCccEEEEc
Q 022592          140 SPSLVIADFGCGDARLAKSVK------NKVFSFDLVS---------------NDPSVIACDMSNT-P-LNSSSVDVAVFC  196 (294)
Q Consensus       140 ~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~---------------~~~~~~~~d~~~l-p-~~~~~fD~Vi~~  196 (294)
                      .++..|||+++|+|.=+..++      ..++++|++.               .++..+..|.... + .....||.|+..
T Consensus        84 ~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~VlvD  163 (283)
T PF01189_consen   84 QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLVD  163 (283)
T ss_dssp             TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEEE
T ss_pred             cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhcC
Confidence            377899999999998665554      4899999998               2445555666544 1 223459999953


Q ss_pred             cc------ccC-CC----------------HHHHHHHHHHhc----CcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHC
Q 022592          197 LS------LMG-IN----------------FPNYLQEAQRVL----KPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDL  249 (294)
Q Consensus       197 ~~------l~~-~~----------------~~~~l~el~r~L----kpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~  249 (294)
                      ..      +.. .+                -...|..+.+.+    +|||.++.+.-.-.-.     -+.+.+..++++.
T Consensus       164 aPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~e-----ENE~vV~~fl~~~  238 (283)
T PF01189_consen  164 APCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPE-----ENEEVVEKFLKRH  238 (283)
T ss_dssp             CSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGG-----GTHHHHHHHHHHS
T ss_pred             CCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHH-----HHHHHHHHHHHhC
Confidence            22      221 11                136789999999    9999999985321111     1335566777776


Q ss_pred             -CCeEEE
Q 022592          250 -GFAPVS  255 (294)
Q Consensus       250 -Gf~~~~  255 (294)
                       .|+++.
T Consensus       239 ~~~~l~~  245 (283)
T PF01189_consen  239 PDFELVP  245 (283)
T ss_dssp             TSEEEEC
T ss_pred             CCcEEEe
Confidence             565554

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=95.09  E-value=0.039  Score=53.16  Aligned_cols=47  Identities=11%  Similarity=0.326  Sum_probs=36.7

Q ss_pred             hhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccC---------------CCCcEEEccCCC
Q 022592          136 LKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS---------------NDPSVIACDMSN  182 (294)
Q Consensus       136 l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~---------------~~~~~~~~d~~~  182 (294)
                      ....+.+..+||+-||||.++..++   ..|+|+++++               .|..|+++-+++
T Consensus       378 ~~~l~~~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~  442 (534)
T KOG2187|consen  378 WAGLPADKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAED  442 (534)
T ss_pred             HhCCCCCcEEEEEeecCCceehhhhccccceeeeecChhhcchhhhcchhcCccceeeeecchhh
Confidence            3334466789999999999999998   4899999998               366788875544

>PRK13699 putative methylase; Provisional

Probab=95.07  E-value=0.061  Score=47.14  Aligned_cols=73  Identities=18%  Similarity=0.160  Sum_probs=49.6

Q ss_pred             cEEEccCCCC--CCCCCCccEEEEccccc----C--------C---C-HHHHHHHHHHhcCcCcEEEEEeecCCCCCCCC
Q 022592          174 SVIACDMSNT--PLNSSSVDVAVFCLSLM----G--------I---N-FPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTG  235 (294)
Q Consensus       174 ~~~~~d~~~l--p~~~~~fD~Vi~~~~l~----~--------~---~-~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~  235 (294)
                      .++.+|+.++  .++++++|+|+...-..    .        .   + ...++.+++|+|||||.+++.--.        
T Consensus         3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~--------   74 (227)
T PRK13699          3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGW--------   74 (227)
T ss_pred             eEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEecc--------
Confidence            4566777654  57789999999874332    0        0   1 247889999999999988863110        


Q ss_pred             CCCHHHHHHHHHHCCCeEEE
Q 022592          236 GADPNKFSKAVCDLGFAPVS  255 (294)
Q Consensus       236 ~~~~~~~~~~l~~~Gf~~~~  255 (294)
                       .....+..+++++||.+..
T Consensus        75 -~~~~~~~~al~~~GF~l~~   93 (227)
T PRK13699         75 -NRVDRFMAAWKNAGFSVVG   93 (227)
T ss_pred             -ccHHHHHHHHHHCCCEEee
Confidence             0135677888999998664

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=94.84  E-value=0.41  Score=43.12  Aligned_cols=110  Identities=11%  Similarity=0.107  Sum_probs=68.7

Q ss_pred             EEEEEcCcccHHHHHhc----cceEEEeccCC-------C--CcEEEccCCCCCCC--CCCccEEEEcccccC-------
Q 022592          144 VIADFGCGDARLAKSVK----NKVFSFDLVSN-------D--PSVIACDMSNTPLN--SSSVDVAVFCLSLMG-------  201 (294)
Q Consensus       144 ~VLDiGcG~G~~~~~l~----~~v~gvD~s~~-------~--~~~~~~d~~~lp~~--~~~fD~Vi~~~~l~~-------  201 (294)
                      +|+|+-||.|.+...+.    ..++++|+.+.       +  ..++.+|+.++...  ...+|+++....-..       
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~~~~~~Di~~~~~~~~~~~~D~l~~gpPCq~fS~ag~~   81 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPNKLIEGDITKIDEKDFIPDIDLLTGGFPCQPFSIAGKR   81 (275)
T ss_pred             cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCCCCccCccccCchhhcCCCCCEEEeCCCChhhhHHhhc
Confidence            68999999999866664    36789998872       1  12567788776532  356999997765442       


Q ss_pred             ---CCH-HHHHH---HHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEE
Q 022592          202 ---INF-PNYLQ---EAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVS  255 (294)
Q Consensus       202 ---~~~-~~~l~---el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~  255 (294)
                         .+. ...+.   ++.+.++|  .+++.|-...+...........+...|++.||.+..
T Consensus        82 ~~~~d~r~~L~~~~~~~i~~~~P--~~~v~ENV~g~~~~~~~~~~~~i~~~l~~~GY~~~~  140 (275)
T cd00315          82 KGFEDTRGTLFFEIIRILKEKKP--KYFLLENVKGLLTHDNGNTLKVILNTLEELGYNVYW  140 (275)
T ss_pred             CCCCCchHHHHHHHHHHHHhcCC--CEEEEEcCcchhccCchHHHHHHHHHHHhCCcEEEE
Confidence               122 22232   34444566  355656443332222223457788999999998866

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function

Probab=94.83  E-value=0.028  Score=44.49  Aligned_cols=74  Identities=16%  Similarity=0.082  Sum_probs=47.0

Q ss_pred             cEEEccCCC-CCCCCCCccEEEEcccccCCCH----HHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHH
Q 022592          174 SVIACDMSN-TPLNSSSVDVAVFCLSLMGINF----PNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCD  248 (294)
Q Consensus       174 ~~~~~d~~~-lp~~~~~fD~Vi~~~~l~~~~~----~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~  248 (294)
                      .+..+|+.. ++--...||+|+...---..++    ..++..++++++|||.+....            ....+...|.+
T Consensus        34 ~L~~gDa~~~l~~l~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~Tys------------~a~~Vr~~L~~  101 (124)
T PF05430_consen   34 TLWFGDAREMLPQLDARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLATYS------------SAGAVRRALQQ  101 (124)
T ss_dssp             EEEES-HHHHHHHB-T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEES--------------BHHHHHHHHH
T ss_pred             EEEEcHHHHHHHhCcccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEEee------------chHHHHHHHHH
Confidence            345555543 2211266888876542222344    589999999999999887743            33779999999


Q ss_pred             CCCeEEEEecc
Q 022592          249 LGFAPVSKDFS  259 (294)
Q Consensus       249 ~Gf~~~~~~~~  259 (294)
                      +||.+......
T Consensus       102 aGF~v~~~~g~  112 (124)
T PF05430_consen  102 AGFEVEKVPGF  112 (124)
T ss_dssp             CTEEEEEEE-S
T ss_pred             cCCEEEEcCCC
Confidence            99999875543

; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=94.74  E-value=0.078  Score=40.64  Aligned_cols=29  Identities=21%  Similarity=0.362  Sum_probs=23.2

Q ss_pred             CCEEEEEcCcccHHHHHhcc---ceEEEeccC
Q 022592          142 SLVIADFGCGDARLAKSVKN---KVFSFDLVS  170 (294)
Q Consensus       142 ~~~VLDiGcG~G~~~~~l~~---~v~gvD~s~  170 (294)
                      ....+|||||+|.+...|..   ..+|+|+-.
T Consensus        59 ~~~FVDlGCGNGLLV~IL~~EGy~G~GiD~R~   90 (112)
T PF07757_consen   59 FQGFVDLGCGNGLLVYILNSEGYPGWGIDARR   90 (112)
T ss_pred             CCceEEccCCchHHHHHHHhCCCCcccccccc
Confidence            44799999999999888763   567888755

; GO: 0008168 methyltransferase activity

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=94.48  E-value=0.2  Score=47.02  Aligned_cols=90  Identities=11%  Similarity=0.148  Sum_probs=63.8

Q ss_pred             HhhccCCCCEEEEEcCcccHHHHHhc--c------------------------------------------ceEEEeccC
Q 022592          135 WLKDHSPSLVIADFGCGDARLAKSVK--N------------------------------------------KVFSFDLVS  170 (294)
Q Consensus       135 ~l~~~~~~~~VLDiGcG~G~~~~~l~--~------------------------------------------~v~gvD~s~  170 (294)
                      .+....++..++|-=||+|.++...+  .                                          .++|+|+.+
T Consensus       185 ~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~  264 (381)
T COG0116         185 LLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDP  264 (381)
T ss_pred             HHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCH
Confidence            33444456689999999999987654  1                                          267999997


Q ss_pred             ----------------CCCcEEEccCCCCCCCCCCccEEEEcccccC-C-C-------HHHHHHHHHHhcCcCcEEEEE
Q 022592          171 ----------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMG-I-N-------FPNYLQEAQRVLKPSGWLLIA  224 (294)
Q Consensus       171 ----------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~-~-~-------~~~~l~el~r~LkpgG~l~i~  224 (294)
                                      +-+.|.+.|+..++-+-+.+|+|||+...-- . +       ...+.+.+.+.++-.+.++++
T Consensus       265 r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~t  343 (381)
T COG0116         265 RHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFT  343 (381)
T ss_pred             HHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEE
Confidence                            3578999999988755478999999876543 1 1       234555666777766777775

>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]

Probab=94.42  E-value=0.39  Score=42.58  Aligned_cols=83  Identities=17%  Similarity=0.247  Sum_probs=53.5

Q ss_pred             CCEEEEEcCcccHHHHHhc----cceEEEeccC----------------CCC--cEEEc-----cCCCCCCCCCC-ccEE
Q 022592          142 SLVIADFGCGDARLAKSVK----NKVFSFDLVS----------------NDP--SVIAC-----DMSNTPLNSSS-VDVA  193 (294)
Q Consensus       142 ~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~----------------~~~--~~~~~-----d~~~lp~~~~~-fD~V  193 (294)
                      ...||++|+|+|..+...+    ..|+-.|+..                .+.  .+.+.     +.....+.... +|+|
T Consensus        87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dli  166 (248)
T KOG2793|consen   87 YINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDLI  166 (248)
T ss_pred             ceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccEE
Confidence            4579999999997555443    4676667655                010  12211     11111111223 9999


Q ss_pred             EEcccccCC-CHHHHHHHHHHhcCcCcEEEEE
Q 022592          194 VFCLSLMGI-NFPNYLQEAQRVLKPSGWLLIA  224 (294)
Q Consensus       194 i~~~~l~~~-~~~~~l~el~r~LkpgG~l~i~  224 (294)
                      +++.++.+. .+..++..++..|..+|.+++.
T Consensus       167 lasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~  198 (248)
T KOG2793|consen  167 LASDVVYEEESFEGLVKTLAFLLAKDGTIFLA  198 (248)
T ss_pred             EEeeeeecCCcchhHHHHHHHHHhcCCeEEEE
Confidence            999999985 7788888899999888855554

>KOG2730 consensus Methylase [General function prediction only]

Probab=94.14  E-value=0.036  Score=47.93  Aligned_cols=78  Identities=19%  Similarity=0.227  Sum_probs=49.3

Q ss_pred             CCEEEEEcCcccHHHHHhc---cceEEEeccC----------------CCCcEEEccCCCC----CCCCCCccEEEEccc
Q 022592          142 SLVIADFGCGDARLAKSVK---NKVFSFDLVS----------------NDPSVIACDMSNT----PLNSSSVDVAVFCLS  198 (294)
Q Consensus       142 ~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~----------------~~~~~~~~d~~~l----p~~~~~fD~Vi~~~~  198 (294)
                      ...|+|.-||-|..+..++   ..|+++|+++                +++.|+++|+.++    .+...-+|+|..+..
T Consensus        95 ~~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~spp  174 (263)
T KOG2730|consen   95 AEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLSPP  174 (263)
T ss_pred             cchhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecCCC
Confidence            3478999888887766665   4889999987                4778999988653    343344666666554


Q ss_pred             ccCCC-HHHHHHHHHHhcCcCc
Q 022592          199 LMGIN-FPNYLQEAQRVLKPSG  219 (294)
Q Consensus       199 l~~~~-~~~~l~el~r~LkpgG  219 (294)
                      -...+ ...-+..+...+.|.|
T Consensus       175 wggp~y~~~~~~DL~~~~~p~~  196 (263)
T KOG2730|consen  175 WGGPSYLRADVYDLETHLKPMG  196 (263)
T ss_pred             CCCcchhhhhhhhhhhhcchhH
Confidence            44332 2233444555555543

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=94.03  E-value=0.47  Score=44.92  Aligned_cols=109  Identities=18%  Similarity=0.189  Sum_probs=69.7

Q ss_pred             CCCEEEEEcCcccHHHHHhc------cceEEEeccCC---------------CCcEEEccCCCCC---CCCCCccEEEEc
Q 022592          141 PSLVIADFGCGDARLAKSVK------NKVFSFDLVSN---------------DPSVIACDMSNTP---LNSSSVDVAVFC  196 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~~---------------~~~~~~~d~~~lp---~~~~~fD~Vi~~  196 (294)
                      ++.+|||+.+.+|.=+.+++      +.+++.|.+..               +..++..|...+|   ++. +||-|+.-
T Consensus       241 ~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fDRVLLD  319 (460)
T KOG1122|consen  241 PGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPG-SFDRVLLD  319 (460)
T ss_pred             CCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCc-ccceeeec
Confidence            67899999999997444443      47899997762               3334555555444   333 89999843


Q ss_pred             ccccC-----------CC------------HHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHC-CCe
Q 022592          197 LSLMG-----------IN------------FPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDL-GFA  252 (294)
Q Consensus       197 ~~l~~-----------~~------------~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~-Gf~  252 (294)
                      .--..           ..            ..+.|..+..++++||+|+.+...-...     -+..-+..+|.+. .++
T Consensus       320 APCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~-----ENE~vV~yaL~K~p~~k  394 (460)
T KOG1122|consen  320 APCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVE-----ENEAVVDYALKKRPEVK  394 (460)
T ss_pred             CCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecchh-----hhHHHHHHHHHhCCceE
Confidence            32221           00            2367888899999999999975432221     1334566777777 455


Q ss_pred             EEE
Q 022592          253 PVS  255 (294)
Q Consensus       253 ~~~  255 (294)
                      ++.
T Consensus       395 L~p  397 (460)
T KOG1122|consen  395 LVP  397 (460)
T ss_pred             ecc
Confidence            544

>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]

Probab=93.82  E-value=0.79  Score=40.37  Aligned_cols=114  Identities=16%  Similarity=0.129  Sum_probs=68.7

Q ss_pred             CCCCEEEEEcCcccHHHHHhc------cceEEEeccC-------------CCCcEEEccCCCCC---CCCCCccEEEEcc
Q 022592          140 SPSLVIADFGCGDARLAKSVK------NKVFSFDLVS-------------NDPSVIACDMSNTP---LNSSSVDVAVFCL  197 (294)
Q Consensus       140 ~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~-------------~~~~~~~~d~~~lp---~~~~~fD~Vi~~~  197 (294)
                      .|+.+||-+|+++|.....+.      ..|++|+.|.             .|+--+..|+....   +.-.-+|+|++.-
T Consensus       155 kpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~KYRmlVgmVDvIFaDv  234 (317)
T KOG1596|consen  155 KPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAKYRMLVGMVDVIFADV  234 (317)
T ss_pred             cCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeeccCCCchheeeeeeeEEEEeccC
Confidence            488899999999999777665      3789999998             35556666765421   2223567766542


Q ss_pred             cccCCCHH-HHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCC-HHHHHHHHHHCCCeEEE
Q 022592          198 SLMGINFP-NYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGAD-PNKFSKAVCDLGFAPVS  255 (294)
Q Consensus       198 ~l~~~~~~-~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~-~~~~~~~l~~~Gf~~~~  255 (294)
                        .+.+.. -+...+.-.|++||-++|+--.+..+.....-+ -..-.+.|++.-++..+
T Consensus       235 --aqpdq~RivaLNA~~FLk~gGhfvisikancidstv~ae~vFa~Ev~klqee~lkP~E  292 (317)
T KOG1596|consen  235 --AQPDQARIVALNAQYFLKNGGHFVISIKANCIDSTVFAEAVFAAEVKKLQEEQLKPKE  292 (317)
T ss_pred             --CCchhhhhhhhhhhhhhccCCeEEEEEecccccccccHHHHHHHHHHHHHHhccCchh
Confidence              223332 344467788999999999754433332211100 01112445665665544

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=93.68  E-value=0.67  Score=43.00  Aligned_cols=82  Identities=17%  Similarity=0.247  Sum_probs=54.7

Q ss_pred             CCCCEEEEEcCcccH--HHHHhc----cceEEEeccCC---------CCcEEEcc-CCCCCCCCCCccEEEEcccccCCC
Q 022592          140 SPSLVIADFGCGDAR--LAKSVK----NKVFSFDLVSN---------DPSVIACD-MSNTPLNSSSVDVAVFCLSLMGIN  203 (294)
Q Consensus       140 ~~~~~VLDiGcG~G~--~~~~l~----~~v~gvD~s~~---------~~~~~~~d-~~~lp~~~~~fD~Vi~~~~l~~~~  203 (294)
                      .|+..|+=+|+| |.  ++..++    .+|+++|.+++         ...++... ......-.+.+|+|+..-.     
T Consensus       165 ~pG~~V~I~G~G-GlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-----  238 (339)
T COG1064         165 KPGKWVAVVGAG-GLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-----  238 (339)
T ss_pred             CCCCEEEEECCc-HHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-----
Confidence            478899999988 65  343333    59999999984         22233322 1111111123899887644     


Q ss_pred             HHHHHHHHHHhcCcCcEEEEEeecC
Q 022592          204 FPNYLQEAQRVLKPSGWLLIAEVKS  228 (294)
Q Consensus       204 ~~~~l~el~r~LkpgG~l~i~e~~~  228 (294)
                       ...+....+.|++||.++++.+..
T Consensus       239 -~~~~~~~l~~l~~~G~~v~vG~~~  262 (339)
T COG1064         239 -PATLEPSLKALRRGGTLVLVGLPG  262 (339)
T ss_pred             -hhhHHHHHHHHhcCCEEEEECCCC
Confidence             667888889999999999987663

>KOG2920 consensus Predicted methyltransferase [General function prediction only]

Probab=93.67  E-value=0.049  Score=48.83  Aligned_cols=85  Identities=15%  Similarity=0.129  Sum_probs=49.9

Q ss_pred             CCCCEEEEEcCcccHHHHHhc----cceEEEeccCCCCcEEEccCCCC-------------------------C-CCCC-
Q 022592          140 SPSLVIADFGCGDARLAKSVK----NKVFSFDLVSNDPSVIACDMSNT-------------------------P-LNSS-  188 (294)
Q Consensus       140 ~~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~~~~~~~~~d~~~l-------------------------p-~~~~-  188 (294)
                      ..+.+|||+|||+|.-...+.    ..++..|.+..-+.+...+...+                         - ...+ 
T Consensus       115 ~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t~~  194 (282)
T KOG2920|consen  115 FSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHTER  194 (282)
T ss_pred             ecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhhccc
Confidence            356799999999998665553    25566666653221111111000                         0 0112 


Q ss_pred             -CccEEEEcccccCCCHHHH--HHHHHHhcCcCcEEEEE
Q 022592          189 -SVDVAVFCLSLMGINFPNY--LQEAQRVLKPSGWLLIA  224 (294)
Q Consensus       189 -~fD~Vi~~~~l~~~~~~~~--l~el~r~LkpgG~l~i~  224 (294)
                       .||+|.++.++.-.+..+.  ......++++.|.++++
T Consensus       195 ~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~a  233 (282)
T KOG2920|consen  195 THYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYVA  233 (282)
T ss_pred             cchhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhhhh
Confidence             6888888888776544333  44556677888888876

>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species

Probab=93.58  E-value=0.14  Score=42.29  Aligned_cols=67  Identities=19%  Similarity=0.198  Sum_probs=45.6

Q ss_pred             CCCccEEEEcccccCC---------CH---HHHHHHHHHhcCcCcEEEEEeecCCCC---CCCCCCCHHHHHHHHHHCCC
Q 022592          187 SSSVDVAVFCLSLMGI---------NF---PNYLQEAQRVLKPSGWLLIAEVKSRFD---PNTGGADPNKFSKAVCDLGF  251 (294)
Q Consensus       187 ~~~fD~Vi~~~~l~~~---------~~---~~~l~el~r~LkpgG~l~i~e~~~~~~---~~~~~~~~~~~~~~l~~~Gf  251 (294)
                      .++||++.+..+++|.         |+   ...+.++.++|||||.|++.-....-.   .....|....+..++.  ||
T Consensus        61 ~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d~i~fNahRiYg~~rL~mm~~--gf  138 (177)
T PF03269_consen   61 AGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTDAIQFNAHRIYGPIRLAMMFY--GF  138 (177)
T ss_pred             hccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCcceEEecceeecHhHHHHHhC--Cc
Confidence            4789999999999983         22   478888999999999999974332100   0111245556655555  88


Q ss_pred             eEEE
Q 022592          252 APVS  255 (294)
Q Consensus       252 ~~~~  255 (294)
                      +.+.
T Consensus       139 e~i~  142 (177)
T PF03269_consen  139 EWID  142 (177)
T ss_pred             EEEe
Confidence            8776

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.45  E-value=0.18  Score=41.05  Aligned_cols=106  Identities=15%  Similarity=0.221  Sum_probs=64.5

Q ss_pred             HHhHHhhhccCCC---cHHHHHHHHhhccCCCCEEEEEcCcccHHHHHhc----cceEEEeccC----------------
Q 022592          114 HSGYQEQMSHWPE---LPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS----------------  170 (294)
Q Consensus       114 ~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~----------------  170 (294)
                      ...|++...++..   ..++.++.++... +..+.+|+|.|.|+.....+    ...+|+++++                
T Consensus        43 aPafRR~cvPYVpAtteQv~nVLSll~~n-~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~  121 (199)
T KOG4058|consen   43 APAFRRLCVPYVPATTEQVENVLSLLRGN-PKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCA  121 (199)
T ss_pred             hHHhheecccccCccHHHHHHHHHHccCC-CCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcc
Confidence            3445555555433   2345566666665 55699999999999877665    2568999887                


Q ss_pred             CCCcEEEccCCCCCCCCCCccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEE
Q 022592          171 NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIA  224 (294)
Q Consensus       171 ~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~  224 (294)
                      ....|..-|+....+.+-.+-+|+-..+++    ......+..-|..|..++..
T Consensus       122 k~trf~RkdlwK~dl~dy~~vviFgaes~m----~dLe~KL~~E~p~nt~vvac  171 (199)
T KOG4058|consen  122 KSTRFRRKDLWKVDLRDYRNVVIFGAESVM----PDLEDKLRTELPANTRVVAC  171 (199)
T ss_pred             cchhhhhhhhhhccccccceEEEeehHHHH----hhhHHHHHhhCcCCCeEEEE
Confidence            356677778877766554333333333322    23333344456667666665

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=93.23  E-value=0.44  Score=48.34  Aligned_cols=57  Identities=16%  Similarity=0.148  Sum_probs=42.6

Q ss_pred             CCccEEEEcccccCCCH----HHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEE
Q 022592          188 SSVDVAVFCLSLMGINF----PNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSK  256 (294)
Q Consensus       188 ~~fD~Vi~~~~l~~~~~----~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~  256 (294)
                      ..+|+++....--..++    ..++..++++++|||.+.-..            +...+...|..+||.+...
T Consensus       165 ~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t------------~a~~vr~~l~~~GF~v~~~  225 (662)
T PRK01747        165 ARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATFT------------SAGFVRRGLQEAGFTVRKV  225 (662)
T ss_pred             ccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEee------------hHHHHHHHHHHcCCeeeec
Confidence            45888775432222233    489999999999999998653            4578899999999998763

>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3)

Probab=93.01  E-value=0.038  Score=42.48  Aligned_cols=66  Identities=20%  Similarity=0.359  Sum_probs=38.2

Q ss_pred             CccEEEEcccccCC--C-----HHHHHHHHHHhcCcCcEEEEEeecCCC--CCCC------------CCCCHHHHHHHHH
Q 022592          189 SVDVAVFCLSLMGI--N-----FPNYLQEAQRVLKPSGWLLIAEVKSRF--DPNT------------GGADPNKFSKAVC  247 (294)
Q Consensus       189 ~fD~Vi~~~~l~~~--~-----~~~~l~el~r~LkpgG~l~i~e~~~~~--~~~~------------~~~~~~~~~~~l~  247 (294)
                      .||+|+|..+..|.  +     ...+++.+++.|+|||.|++- ..++-  ....            -.+.++.+...|.
T Consensus         1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilE-pQ~w~sY~~~~~~~~~~~~n~~~i~lrP~~F~~~L~   79 (110)
T PF06859_consen    1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILE-PQPWKSYKKAKRLSEEIRENYKSIKLRPDQFEDYLL   79 (110)
T ss_dssp             -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE----HHHHHTTTTS-HHHHHHHHH----GGGHHHHHT
T ss_pred             CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEe-CCCcHHHHHHhhhhHHHHhHHhceEEChHHHHHHHH
Confidence            48999988887763  2     457999999999999999984 22210  0000            0034566777776


Q ss_pred             H--CCCeEEE
Q 022592          248 D--LGFAPVS  255 (294)
Q Consensus       248 ~--~Gf~~~~  255 (294)
                      +  .||..++
T Consensus        80 ~~evGF~~~e   89 (110)
T PF06859_consen   80 EPEVGFSSVE   89 (110)
T ss_dssp             STTT---EEE
T ss_pred             hcccceEEEE
Confidence            6  5887665

Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=92.80  E-value=0.083  Score=42.13  Aligned_cols=27  Identities=19%  Similarity=0.348  Sum_probs=23.3

Q ss_pred             EEEEEcCcccHHHHHhc-----cceEEEeccC
Q 022592          144 VIADFGCGDARLAKSVK-----NKVFSFDLVS  170 (294)
Q Consensus       144 ~VLDiGcG~G~~~~~l~-----~~v~gvD~s~  170 (294)
                      +|||||||.|.++..++     .+++++|+++
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~   32 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLP   32 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCH
Confidence            48999999999988776     2699999998

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=91.99  E-value=0.29  Score=44.73  Aligned_cols=70  Identities=17%  Similarity=0.186  Sum_probs=50.6

Q ss_pred             HHHHHHHhhccCCCCEEEEEcCcccHHHHHhc-----cceEEEeccC--------------CCCcEEEccCCCCC-----
Q 022592          129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS--------------NDPSVIACDMSNTP-----  184 (294)
Q Consensus       129 ~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~--------------~~~~~~~~d~~~lp-----  184 (294)
                      ++.+++.+... ++..++|.-+|.|..+..++     ..|+|+|..+              .++.++.++..++.     
T Consensus         9 l~Evl~~L~~~-~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~~l~~   87 (305)
T TIGR00006         9 LDEVVEGLNIK-PDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFFEHLDE   87 (305)
T ss_pred             HHHHHHhcCcC-CCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHHHHHHh
Confidence            35567777655 66799999999999888776     3799999886              26677777776543     


Q ss_pred             CCCCCccEEEEcccc
Q 022592          185 LNSSSVDVAVFCLSL  199 (294)
Q Consensus       185 ~~~~~fD~Vi~~~~l  199 (294)
                      ....++|.|++...+
T Consensus        88 ~~~~~vDgIl~DLGv  102 (305)
T TIGR00006        88 LLVTKIDGILVDLGV  102 (305)
T ss_pred             cCCCcccEEEEeccC
Confidence            233568888876555

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>COG4301 Uncharacterized conserved protein [Function unknown]

Probab=91.82  E-value=3.2  Score=36.82  Aligned_cols=90  Identities=13%  Similarity=0.285  Sum_probs=54.2

Q ss_pred             HhhccCCCCEEEEEcCcccHHHHHhc---------cceEEEeccCC--------------CC--cEEEccCCC-CC-CCC
Q 022592          135 WLKDHSPSLVIADFGCGDARLAKSVK---------NKVFSFDLVSN--------------DP--SVIACDMSN-TP-LNS  187 (294)
Q Consensus       135 ~l~~~~~~~~VLDiGcG~G~~~~~l~---------~~v~gvD~s~~--------------~~--~~~~~d~~~-lp-~~~  187 (294)
                      .+.....+..++|+|+|+..=+..|.         .+++.+|+|..              .+  .-+++|.+. +. ++.
T Consensus        72 Eia~~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~  151 (321)
T COG4301          72 EIASITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPR  151 (321)
T ss_pred             HHHHhhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccC
Confidence            33333345689999999987555443         26789999971              22  233444432 11 122


Q ss_pred             CCccEEEE-cccccCC---CHHHHHHHHHHhcCcCcEEEEE
Q 022592          188 SSVDVAVF-CLSLMGI---NFPNYLQEAQRVLKPSGWLLIA  224 (294)
Q Consensus       188 ~~fD~Vi~-~~~l~~~---~~~~~l~el~r~LkpgG~l~i~  224 (294)
                      ..=-++++ ..+|-.+   +...++..+...|+||-++++.
T Consensus       152 ~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlG  192 (321)
T COG4301         152 GGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLG  192 (321)
T ss_pred             CCeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEe
Confidence            33333333 3333333   4457899999999999999884

>PRK11524 putative methyltransferase; Provisional

Probab=91.50  E-value=0.25  Score=44.69  Aligned_cols=54  Identities=24%  Similarity=0.265  Sum_probs=38.8

Q ss_pred             CCCcEEEccCCCC--CCCCCCccEEEEcccccC----CC-------------HHHHHHHHHHhcCcCcEEEEE
Q 022592          171 NDPSVIACDMSNT--PLNSSSVDVAVFCLSLMG----IN-------------FPNYLQEAQRVLKPSGWLLIA  224 (294)
Q Consensus       171 ~~~~~~~~d~~~l--p~~~~~fD~Vi~~~~l~~----~~-------------~~~~l~el~r~LkpgG~l~i~  224 (294)
                      .+..++.+|+..+  .+++++||+|++..-..-    .+             ...++.++.++|||||.+++.
T Consensus         7 ~~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~   79 (284)
T PRK11524          7 EAKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM   79 (284)
T ss_pred             CCCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence            3445777887763  466889999998644320    00             146889999999999999985

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=91.30  E-value=1.6  Score=39.64  Aligned_cols=41  Identities=17%  Similarity=0.267  Sum_probs=32.4

Q ss_pred             HHHHHHHhhccCCCCEEEEEcCcccHHHHHhc------cceEEEeccC
Q 022592          129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS  170 (294)
Q Consensus       129 ~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~  170 (294)
                      ++.+++.|... ++...+|.--|.|..+..+.      ..++|+|-.+
T Consensus        12 l~E~i~~L~~~-~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~   58 (314)
T COG0275          12 LNEVVELLAPK-PDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDP   58 (314)
T ss_pred             HHHHHHhcccC-CCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCH
Confidence            45667777766 56799999999999988876      3689999776

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=91.06  E-value=0.2  Score=44.05  Aligned_cols=72  Identities=18%  Similarity=0.068  Sum_probs=41.6

Q ss_pred             HHHHHHhhccC-CCCEEEEEcCcccHHHHHhc---cceEEEeccC------------------------CCCcEEEccCC
Q 022592          130 NIIVKWLKDHS-PSLVIADFGCGDARLAKSVK---NKVFSFDLVS------------------------NDPSVIACDMS  181 (294)
Q Consensus       130 ~~~~~~l~~~~-~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~------------------------~~~~~~~~d~~  181 (294)
                      +.+++...... ...+|||.-+|-|..+..++   .+|++++-|+                        .+++++.+|..
T Consensus        63 ~~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~  142 (234)
T PF04445_consen   63 DPLAKAVGLKPGMRPSVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDAL  142 (234)
T ss_dssp             SHHHHHTT-BTTB---EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CC
T ss_pred             cHHHHHhCCCCCCCCEEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHH
Confidence            33555554331 12489999999999888776   5899999887                        25678888887


Q ss_pred             C-CCCCCCCccEEEEcccccC
Q 022592          182 N-TPLNSSSVDVAVFCLSLMG  201 (294)
Q Consensus       182 ~-lp~~~~~fD~Vi~~~~l~~  201 (294)
                      + ++.++.+||+|++...+.+
T Consensus       143 ~~L~~~~~s~DVVY~DPMFp~  163 (234)
T PF04445_consen  143 EYLRQPDNSFDVVYFDPMFPE  163 (234)
T ss_dssp             CHCCCHSS--SEEEE--S---
T ss_pred             HHHhhcCCCCCEEEECCCCCC
Confidence            6 5566789999999888876

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]

Probab=91.04  E-value=0.34  Score=47.85  Aligned_cols=84  Identities=15%  Similarity=0.168  Sum_probs=56.8

Q ss_pred             CCCCEEEEEcCcccHHHHHhc------cceEEEeccC----CCCcEEEccCCCC----C----CCCCCccEEEEccccc-
Q 022592          140 SPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----NDPSVIACDMSNT----P----LNSSSVDVAVFCLSLM-  200 (294)
Q Consensus       140 ~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~----~~~~~~~~d~~~l----p----~~~~~fD~Vi~~~~l~-  200 (294)
                      .++..|||+||.+|.|+....      ..|+|+|+.+    +++..++.|+..-    +    +..-..|+|++-.+-. 
T Consensus        43 ~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pikp~~~c~t~v~dIttd~cr~~l~k~l~t~~advVLhDgapnV  122 (780)
T KOG1098|consen   43 EKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIKPIPNCDTLVEDITTDECRSKLRKILKTWKADVVLHDGAPNV  122 (780)
T ss_pred             cccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecccCCccchhhhhhhHHHHHHHHHHHHHhCCCcEEeecCCCcc
Confidence            366789999999999988765      4789999988    5666666676541    1    1223458888654422 


Q ss_pred             ---CC-C-------HHHHHHHHHHhcCcCcEEEE
Q 022592          201 ---GI-N-------FPNYLQEAQRVLKPSGWLLI  223 (294)
Q Consensus       201 ---~~-~-------~~~~l~el~r~LkpgG~l~i  223 (294)
                         |. |       ...+++-+...|+.||.++-
T Consensus       123 g~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fvt  156 (780)
T KOG1098|consen  123 GGNWVQDAFQQACLTLRALKLATEFLAKGGTFVT  156 (780)
T ss_pred             chhHHHHHHHhhHHHHHHHHHHHHHHHhcCcccc
Confidence               11 1       12566777788999999544

>PRK10742 putative methyltransferase; Provisional

Probab=90.22  E-value=0.55  Score=41.59  Aligned_cols=72  Identities=11%  Similarity=-0.021  Sum_probs=48.6

Q ss_pred             HHHHHHhhccCCCC--EEEEEcCcccHHHHHhc---cceEEEeccC------------------------CCCcEEEccC
Q 022592          130 NIIVKWLKDHSPSL--VIADFGCGDARLAKSVK---NKVFSFDLVS------------------------NDPSVIACDM  180 (294)
Q Consensus       130 ~~~~~~l~~~~~~~--~VLDiGcG~G~~~~~l~---~~v~gvD~s~------------------------~~~~~~~~d~  180 (294)
                      +.+++.+... ++.  +|||+-+|.|..+..++   ..|+++|-++                        .+++++.+|.
T Consensus        76 ~~l~kAvglk-~g~~p~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da  154 (250)
T PRK10742         76 EAVAKAVGIK-GDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS  154 (250)
T ss_pred             cHHHHHhCCC-CCCCCEEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcH
Confidence            3455555433 444  89999999999999887   4799999886                        1233445555


Q ss_pred             CCC-CCCCCCccEEEEcccccCC
Q 022592          181 SNT-PLNSSSVDVAVFCLSLMGI  202 (294)
Q Consensus       181 ~~l-p~~~~~fD~Vi~~~~l~~~  202 (294)
                      ... .-...+||+|++-..+.|.
T Consensus       155 ~~~L~~~~~~fDVVYlDPMfp~~  177 (250)
T PRK10742        155 LTALTDITPRPQVVYLDPMFPHK  177 (250)
T ss_pred             HHHHhhCCCCCcEEEECCCCCCC
Confidence            332 1122479999998888874

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=90.14  E-value=5  Score=39.29  Aligned_cols=120  Identities=17%  Similarity=0.190  Sum_probs=72.2

Q ss_pred             CCcHHHHHHHHhhccCCCCEEEEEcCcccHHHHHhc---------cceEEEeccC------------CCC----cEEEcc
Q 022592          125 PELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK---------NKVFSFDLVS------------NDP----SVIACD  179 (294)
Q Consensus       125 ~~~~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---------~~v~gvD~s~------------~~~----~~~~~d  179 (294)
                      |...++.+++.+... +..+|+|..||+|.+.....         ..++|.++..            ..+    ....+|
T Consensus       171 P~~v~~liv~~l~~~-~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~d  249 (489)
T COG0286         171 PREVSELIVELLDPE-PRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGD  249 (489)
T ss_pred             hHHHHHHHHHHcCCC-CCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccc
Confidence            444556666666653 55699999999998765443         1367888765            222    333333


Q ss_pred             CCCCCC-----CCCCccEEEEccccc---CC-----------------------CHHHHHHHHHHhcCcCcEEEEEeecC
Q 022592          180 MSNTPL-----NSSSVDVAVFCLSLM---GI-----------------------NFPNYLQEAQRVLKPSGWLLIAEVKS  228 (294)
Q Consensus       180 ~~~lp~-----~~~~fD~Vi~~~~l~---~~-----------------------~~~~~l~el~r~LkpgG~l~i~e~~~  228 (294)
                      -..-|.     ..+.||+|+++.-+.   |.                       +...++..+...|+|||...|+-...
T Consensus       250 tl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~~g  329 (489)
T COG0286         250 TLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLPDG  329 (489)
T ss_pred             cccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEecCC
Confidence            333222     235699988876653   10                       12578999999999999777664443


Q ss_pred             CCCCCCCCCCHHHHHHHHHH
Q 022592          229 RFDPNTGGADPNKFSKAVCD  248 (294)
Q Consensus       229 ~~~~~~~~~~~~~~~~~l~~  248 (294)
                      ......   ....+.+.+-+
T Consensus       330 vlfr~~---~e~~IR~~l~~  346 (489)
T COG0286         330 VLFRGG---AEKDIRKDLLE  346 (489)
T ss_pred             cCcCCC---chHHHHHHHHh
Confidence            332221   23556555544

>PRK10458 DNA cytosine methylase; Provisional

Probab=89.62  E-value=6.5  Score=38.26  Aligned_cols=111  Identities=13%  Similarity=0.199  Sum_probs=66.5

Q ss_pred             CCEEEEEcCcccHHHHHhc----cceEEEeccCC-------------CCcEEEccCCCCCCC-----------------C
Q 022592          142 SLVIADFGCGDARLAKSVK----NKVFSFDLVSN-------------DPSVIACDMSNTPLN-----------------S  187 (294)
Q Consensus       142 ~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~~-------------~~~~~~~d~~~lp~~-----------------~  187 (294)
                      ..+++|+=||.|.+...+.    ..|.++|+.+.             ....+.+|+..+...                 -
T Consensus        88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~~~~~~  167 (467)
T PRK10458         88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYCDPATHRFNEDIRDITLSHKEGVSDEEAAEHIRQHI  167 (467)
T ss_pred             CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCCCCccceeccChhhCccccccccchhhhhhhhhccC
Confidence            4589999999999877664    35678888761             224556777665421                 1


Q ss_pred             CCccEEEEcccccCC-------------------C-HHHHHHHHHH---hcCcCcEEEEEeecCCCCCCCCCCCHHHHHH
Q 022592          188 SSVDVAVFCLSLMGI-------------------N-FPNYLQEAQR---VLKPSGWLLIAEVKSRFDPNTGGADPNKFSK  244 (294)
Q Consensus       188 ~~fD~Vi~~~~l~~~-------------------~-~~~~l~el~r---~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~  244 (294)
                      ..+|+++....-..+                   + ...++.++.|   .++|  .+++.|=...+.....+.+...+..
T Consensus       168 p~~DvL~gGpPCQ~FS~AG~~k~~~~gr~~g~~~d~rg~Lf~~~~rii~~~kP--k~fvlENV~gl~s~~~g~~f~~i~~  245 (467)
T PRK10458        168 PDHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFECETQGTLFFDVARIIDAKRP--AIFVLENVKNLKSHDKGKTFRIIMQ  245 (467)
T ss_pred             CCCCEEEEcCCCCccchhcccccccccccccccCCccccHHHHHHHHHHHhCC--CEEEEeCcHhhhcccccHHHHHHHH
Confidence            247888864433321                   1 1113344444   4455  3555554433333333345678889


Q ss_pred             HHHHCCCeEE
Q 022592          245 AVCDLGFAPV  254 (294)
Q Consensus       245 ~l~~~Gf~~~  254 (294)
                      .|++.||.+.
T Consensus       246 ~L~~lGY~v~  255 (467)
T PRK10458        246 TLDELGYDVA  255 (467)
T ss_pred             HHHHcCCeEE
Confidence            9999999985

>PTZ00357 methyltransferase; Provisional

Probab=89.31  E-value=1.5  Score=44.22  Aligned_cols=125  Identities=17%  Similarity=0.218  Sum_probs=77.0

Q ss_pred             cHHHHHHHhcChhhHHHHHHhHHhhhccCCCcHH--------HHH------HHHhhccC---CCCEEEEEcCcccHHHHH
Q 022592           96 GKEALDYFNENPALFDMYHSGYQEQMSHWPELPV--------NII------VKWLKDHS---PSLVIADFGCGDARLAKS  158 (294)
Q Consensus        96 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--------~~~------~~~l~~~~---~~~~VLDiGcG~G~~~~~  158 (294)
                      .....+.|..++-.|+.|.+........|.....        ..+      +.......   ....|+=+|+|-|.+...
T Consensus       638 ES~TYEVFEKDpVKYdqYE~AI~kAL~Dw~~~~~~~~~~~~ns~~~~k~~~mdrvp~~~~d~~~vVImVVGAGRGPLVdr  717 (1072)
T PTZ00357        638 SSGVYEVFERDARKYRQYREAVFHYVRDWYAAGAEQQHAHQNSEFFAKHGVMQRVPVPSPDERTLHLVLLGCGRGPLIDE  717 (1072)
T ss_pred             chhhHHHHcCCcHHHHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccCCCceEEEEEEcCCccHHHHH
Confidence            3445677888888899988877666655532100        000      01111111   113689999999987654


Q ss_pred             hc---------cceEEEeccCC------------------------CCcEEEccCCCCCCCC-----------CCccEEE
Q 022592          159 VK---------NKVFSFDLVSN------------------------DPSVIACDMSNTPLNS-----------SSVDVAV  194 (294)
Q Consensus       159 l~---------~~v~gvD~s~~------------------------~~~~~~~d~~~lp~~~-----------~~fD~Vi  194 (294)
                      ..         -++++|+-+++                        .++++..|+..+..+.           +.+|+||
T Consensus       718 aLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~s~~~P~~~gKaDIVV  797 (1072)
T PTZ00357        718 CLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENGSLTLPADFGLCDLIV  797 (1072)
T ss_pred             HHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccccccccccccccceeh
Confidence            42         16888887741                        2678889998864331           3699999


Q ss_pred             EcccccC-CC--HHHHHHHHHHhcCc----CcE
Q 022592          195 FCLSLMG-IN--FPNYLQEAQRVLKP----SGW  220 (294)
Q Consensus       195 ~~~~l~~-~~--~~~~l~el~r~Lkp----gG~  220 (294)
                      +-..=.+ .|  -++.|..+.+.||+    +|+
T Consensus       798 SELLGSFGDNELSPECLDGaQrfLKdiqhsdGI  830 (1072)
T PTZ00357        798 SELLGSLGDNELSPECLEAFHAQLEDIQLSRGI  830 (1072)
T ss_pred             HhhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence            7433222 11  35788888888887    776

>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family

Probab=89.31  E-value=8.5  Score=34.35  Aligned_cols=114  Identities=14%  Similarity=0.151  Sum_probs=72.2

Q ss_pred             CEEEEEcCcccHHHHHhc--c--ceEEEeccC-----------------CCCcEEEccCCC-C-------CCCCCCccEE
Q 022592          143 LVIADFGCGDARLAKSVK--N--KVFSFDLVS-----------------NDPSVIACDMSN-T-------PLNSSSVDVA  193 (294)
Q Consensus       143 ~~VLDiGcG~G~~~~~l~--~--~v~gvD~s~-----------------~~~~~~~~d~~~-l-------p~~~~~fD~V  193 (294)
                      ..|+.+|||-=.-...+.  .  .++-+|...                 .+.+++.+|+.. +       .+.....-++
T Consensus        83 ~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ptl~  162 (260)
T TIGR00027        83 RQVVILGAGLDTRAYRLPWPDGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTAPTAW  162 (260)
T ss_pred             cEEEEeCCccccHHHhcCCCCCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCCCeee
Confidence            369999999766555553  1  344455433                 355677888752 1       1222334577


Q ss_pred             EEcccccCCC---HHHHHHHHHHhcCcCcEEEEEeecCC--------------------CCCCCCCCCHHHHHHHHHHCC
Q 022592          194 VFCLSLMGIN---FPNYLQEAQRVLKPSGWLLIAEVKSR--------------------FDPNTGGADPNKFSKAVCDLG  250 (294)
Q Consensus       194 i~~~~l~~~~---~~~~l~el~r~LkpgG~l~i~e~~~~--------------------~~~~~~~~~~~~~~~~l~~~G  250 (294)
                      ++-.++++.+   ...++..+.+...||+.+++--+...                    ..+....++.+++..+|...|
T Consensus       163 i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G  242 (260)
T TIGR00027       163 LWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVRPLDGEWRAGMRAPVYHAARGVDGSGLVFGIDRADVAEWLAERG  242 (260)
T ss_pred             eecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEeccccchhHHHHHHHHHHHhhhcccccccccCCChhhHHHHHHHCC
Confidence            7777887754   45688888888888888877432210                    011112367889999999999


Q ss_pred             CeEEEE
Q 022592          251 FAPVSK  256 (294)
Q Consensus       251 f~~~~~  256 (294)
                      |.+...
T Consensus       243 w~~~~~  248 (260)
T TIGR00027       243 WRASEH  248 (260)
T ss_pred             CeeecC
Confidence            988764

This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=89.15  E-value=1  Score=40.91  Aligned_cols=109  Identities=16%  Similarity=0.185  Sum_probs=65.4

Q ss_pred             EEEEEcCcccHHHHHhc----cceEEEeccCC-------CC-cEEEccCCCCC---CCCCCccEEEEcccccCC------
Q 022592          144 VIADFGCGDARLAKSVK----NKVFSFDLVSN-------DP-SVIACDMSNTP---LNSSSVDVAVFCLSLMGI------  202 (294)
Q Consensus       144 ~VLDiGcG~G~~~~~l~----~~v~gvD~s~~-------~~-~~~~~d~~~lp---~~~~~fD~Vi~~~~l~~~------  202 (294)
                      +++|+=||-|.+...+.    ..+.++|+.+.       |. ....+|+..+.   ++. .+|+++....-..+      
T Consensus         2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~~~~~~Di~~~~~~~l~~-~~D~l~ggpPCQ~fS~ag~~   80 (335)
T PF00145_consen    2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFPEVICGDITEIDPSDLPK-DVDLLIGGPPCQGFSIAGKR   80 (335)
T ss_dssp             EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHTEEEESHGGGCHHHHHHH-T-SEEEEE---TTTSTTSTH
T ss_pred             cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhcccccccccccccccccccc-cceEEEeccCCceEeccccc
Confidence            68999999998877665    37889999881       11 77888888765   443 59999976544321      


Q ss_pred             ----CH----HHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEE
Q 022592          203 ----NF----PNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVS  255 (294)
Q Consensus       203 ----~~----~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~  255 (294)
                          |.    -..+-++.+.++|  .+++.|=...+...........+.+.|++.||.+..
T Consensus        81 ~~~~d~r~~L~~~~~~~v~~~~P--k~~~~ENV~~l~~~~~~~~~~~i~~~l~~lGY~v~~  139 (335)
T PF00145_consen   81 KGFDDPRNSLFFEFLRIVKELKP--KYFLLENVPGLLSSKNGEVFKEILEELEELGYNVQW  139 (335)
T ss_dssp             HCCCCHTTSHHHHHHHHHHHHS---SEEEEEEEGGGGTGGGHHHHHHHHHHHHHTTEEEEE
T ss_pred             cccccccchhhHHHHHHHhhccc--eEEEecccceeeccccccccccccccccccceeehh
Confidence                21    1233344556677  344445333332221222457888999999998876

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function

Probab=89.11  E-value=0.39  Score=43.79  Aligned_cols=58  Identities=16%  Similarity=0.257  Sum_probs=41.9

Q ss_pred             CcEEEccCCCCCCCC-------CCccEEEEcccccC---C---CHHHHHHHHHHhcCcCcEEEEEeecCCC
Q 022592          173 PSVIACDMSNTPLNS-------SSVDVAVFCLSLMG---I---NFPNYLQEAQRVLKPSGWLLIAEVKSRF  230 (294)
Q Consensus       173 ~~~~~~d~~~lp~~~-------~~fD~Vi~~~~l~~---~---~~~~~l~el~r~LkpgG~l~i~e~~~~~  230 (294)
                      +.|.+.|+..+..++       ...|+|+..+++.-   .   .-.++|..+-..++||..|+|+|-...+
T Consensus       177 ~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSpGSY  247 (315)
T PF11312_consen  177 VSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSPGSY  247 (315)
T ss_pred             eeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCCCCc
Confidence            357778887765322       24688887777753   1   3458999999999999999999866554

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=88.80  E-value=0.67  Score=40.12  Aligned_cols=29  Identities=21%  Similarity=0.397  Sum_probs=21.6

Q ss_pred             CCEEEEEcCcccHHHHHhc-------cceEEEeccC
Q 022592          142 SLVIADFGCGDARLAKSVK-------NKVFSFDLVS  170 (294)
Q Consensus       142 ~~~VLDiGcG~G~~~~~l~-------~~v~gvD~s~  170 (294)
                      +..+.|-.||.|+++-.+.       ..|+|-|+++
T Consensus        52 p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~   87 (246)
T PF11599_consen   52 PYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDE   87 (246)
T ss_dssp             -EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-H
T ss_pred             CeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCH
Confidence            3589999999999877664       3789999986

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>PF11253 DUF3052: Protein of unknown function (DUF3052); InterPro: IPR021412 This family of proteins with unknown function appears to be restricted to Actinobacteria

Probab=85.02  E-value=14  Score=29.26  Aligned_cols=79  Identities=15%  Similarity=0.148  Sum_probs=56.8

Q ss_pred             CCCccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEEeccCCeEEEE
Q 022592          187 SSSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSKDFSNKMFIMF  266 (294)
Q Consensus       187 ~~~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~f~~i  266 (294)
                      ++-+|+|+..+--.--+....|-.+.+.|..+|.+++.......   .+..++.++.+....+|+..+..-.....+.-+
T Consensus        43 ddvvD~vllWwR~~DgDL~D~LvDa~~~L~d~G~IWvltPK~gr---~g~V~~~~I~eaA~taGL~~t~~~~v~~dWsg~  119 (127)
T PF11253_consen   43 DDVVDVVLLWWRDDDGDLVDALVDARTNLADDGVIWVLTPKAGR---PGHVEPSDIREAAPTAGLVQTKSCAVGDDWSGT  119 (127)
T ss_pred             cccccEEEEEEECCcchHHHHHHHHHhhhcCCCEEEEEccCCCC---CCCCCHHHHHHHHhhcCCeeeeeeccCCCccEE
Confidence            45578888765544457788888899999999999997644222   234678999999999999988855544544444


Q ss_pred             EE
Q 022592          267 YF  268 (294)
Q Consensus       267 ~~  268 (294)
                      -+
T Consensus       120 rL  121 (127)
T PF11253_consen  120 RL  121 (127)
T ss_pred             Ee
Confidence            33

>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=84.87  E-value=5.5  Score=36.78  Aligned_cols=110  Identities=16%  Similarity=0.177  Sum_probs=69.9

Q ss_pred             CEEEEEcCcccHHHHHhc----cceEEEeccCC----------CCcEEEccCCCCCCCC---CCccEEEEcccccCC---
Q 022592          143 LVIADFGCGDARLAKSVK----NKVFSFDLVSN----------DPSVIACDMSNTPLNS---SSVDVAVFCLSLMGI---  202 (294)
Q Consensus       143 ~~VLDiGcG~G~~~~~l~----~~v~gvD~s~~----------~~~~~~~d~~~lp~~~---~~fD~Vi~~~~l~~~---  202 (294)
                      .+++|+=||-|.+..-+.    .-+.++|+.+.          ...+...|+..+....   ..+|+++...--..+   
T Consensus         4 ~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~~~~~~~di~~~~~~~~~~~~~DvligGpPCQ~FS~a   83 (328)
T COG0270           4 MKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPHGDIILGDIKELDGEALRKSDVDVLIGGPPCQDFSIA   83 (328)
T ss_pred             ceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCCCceeechHhhcChhhccccCCCEEEeCCCCcchhhc
Confidence            579999999998776654    36778898872          2456667776543211   168999976555431   


Q ss_pred             -------CHH----HHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEE
Q 022592          203 -------NFP----NYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVS  255 (294)
Q Consensus       203 -------~~~----~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~  255 (294)
                             |+.    -.+.++...++|  .+++.|=....... ..-..+.+.+.|++.||.+..
T Consensus        84 G~r~~~~D~R~~L~~~~~r~I~~~~P--~~fv~ENV~gl~~~-~~~~~~~i~~~L~~~GY~~~~  144 (328)
T COG0270          84 GKRRGYDDPRGSLFLEFIRLIEQLRP--KFFVLENVKGLLSS-KGQTFDEIKKELEELGYGVEF  144 (328)
T ss_pred             CcccCCcCccceeeHHHHHHHHhhCC--CEEEEecCchHHhc-CchHHHHHHHHHHHcCCcchH
Confidence                   222    344556667788  56665533322222 334678999999999997443

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=84.74  E-value=2.8  Score=38.21  Aligned_cols=60  Identities=8%  Similarity=0.045  Sum_probs=29.5

Q ss_pred             CCEEEEEcCcccHHHHHhc-----cceEEEeccC-----------------CCCcEEEcc----CCC-CCCCCCCccEEE
Q 022592          142 SLVIADFGCGDARLAKSVK-----NKVFSFDLVS-----------------NDPSVIACD----MSN-TPLNSSSVDVAV  194 (294)
Q Consensus       142 ~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~-----------------~~~~~~~~d----~~~-lp~~~~~fD~Vi  194 (294)
                      ..++||||||....--.|.     -.++|.|+.+                 ..+.++...    +.. +-.+.+.||+++
T Consensus       103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftm  182 (299)
T PF05971_consen  103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFTM  182 (299)
T ss_dssp             --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEEE
T ss_pred             ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEEe
Confidence            3579999999875433333     2889999987                 234454332    211 223346899999


Q ss_pred             EcccccC
Q 022592          195 FCLSLMG  201 (294)
Q Consensus       195 ~~~~l~~  201 (294)
                      |+.-++.
T Consensus       183 CNPPFy~  189 (299)
T PF05971_consen  183 CNPPFYS  189 (299)
T ss_dssp             E-----S
T ss_pred             cCCcccc
Confidence            9888775

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=84.13  E-value=1.8  Score=39.70  Aligned_cols=109  Identities=14%  Similarity=0.124  Sum_probs=64.5

Q ss_pred             EEEEcCcccHHHHHhc----cceEEEeccCC-------CC--cEEEccCCCCCCC-CCCccEEEEcccccC---------
Q 022592          145 IADFGCGDARLAKSVK----NKVFSFDLVSN-------DP--SVIACDMSNTPLN-SSSVDVAVFCLSLMG---------  201 (294)
Q Consensus       145 VLDiGcG~G~~~~~l~----~~v~gvD~s~~-------~~--~~~~~d~~~lp~~-~~~fD~Vi~~~~l~~---------  201 (294)
                      |+|+-||.|.+..-+.    ..+.++|+.+.       +.  .++.+|+.++... -..+|+++....-..         
T Consensus         1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~~~~~~~Di~~~~~~~~~~~dvl~gg~PCq~fS~ag~~~~   80 (315)
T TIGR00675         1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFGNKVPFGDITKISPSDIPDFDILLGGFPCQPFSIAGKRKG   80 (315)
T ss_pred             CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCCCCCCccChhhhhhhhCCCcCEEEecCCCcccchhcccCC
Confidence            5899999998877664    25678998761       11  4556788775421 124899886544322         


Q ss_pred             -CCHH-HHHHHHHH---hcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEE
Q 022592          202 -INFP-NYLQEAQR---VLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVS  255 (294)
Q Consensus       202 -~~~~-~~l~el~r---~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~  255 (294)
                       .+.. .++.++.+   .++|  .+++.|-...+.....+.....+...|+..||.+..
T Consensus        81 ~~d~r~~L~~~~~r~i~~~~P--~~~v~ENV~~l~~~~~~~~~~~i~~~l~~~GY~v~~  137 (315)
T TIGR00675        81 FEDTRGTLFFEIVRILKEKKP--KFFLLENVKGLVSHDKGRTFKVIIETLEELGYKVYY  137 (315)
T ss_pred             CCCchhhHHHHHHHHHhhcCC--CEEEeeccHHHHhcccchHHHHHHHHHHhCCCEEEE
Confidence             1222 33344444   4466  456655333322222223457788889999998866

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=83.62  E-value=1.7  Score=40.50  Aligned_cols=82  Identities=21%  Similarity=0.306  Sum_probs=53.0

Q ss_pred             CCCEEEEEcCcc-cHHHHHhc-----cceEEEeccCCCCcEE---------EccCCC-C-----CCCC-CCccEEEEccc
Q 022592          141 PSLVIADFGCGD-ARLAKSVK-----NKVFSFDLVSNDPSVI---------ACDMSN-T-----PLNS-SSVDVAVFCLS  198 (294)
Q Consensus       141 ~~~~VLDiGcG~-G~~~~~l~-----~~v~gvD~s~~~~~~~---------~~d~~~-l-----p~~~-~~fD~Vi~~~~  198 (294)
                      ++.+|+=+|||+ |.++..++     ..|+++|.++.+..+.         .....+ .     .... ..+|+|+-+..
T Consensus       168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G  247 (350)
T COG1063         168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG  247 (350)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC
Confidence            444899999997 44444443     4889999998433221         111110 0     1111 25899886554


Q ss_pred             ccCCCHHHHHHHHHHhcCcCcEEEEEeec
Q 022592          199 LMGINFPNYLQEAQRVLKPSGWLLIAEVK  227 (294)
Q Consensus       199 l~~~~~~~~l~el~r~LkpgG~l~i~e~~  227 (294)
                           -..++..+.++++|||.+++..+.
T Consensus       248 -----~~~~~~~ai~~~r~gG~v~~vGv~  271 (350)
T COG1063         248 -----SPPALDQALEALRPGGTVVVVGVY  271 (350)
T ss_pred             -----CHHHHHHHHHHhcCCCEEEEEecc
Confidence                 256899999999999999998654

>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]

Probab=83.48  E-value=13  Score=34.79  Aligned_cols=109  Identities=18%  Similarity=0.144  Sum_probs=63.3

Q ss_pred             CCCCEEEEEcCcccHHHHHhc-----c----ceEEEeccCC---------------CCcEEEccCCCCC---------CC
Q 022592          140 SPSLVIADFGCGDARLAKSVK-----N----KVFSFDLVSN---------------DPSVIACDMSNTP---------LN  186 (294)
Q Consensus       140 ~~~~~VLDiGcG~G~~~~~l~-----~----~v~gvD~s~~---------------~~~~~~~d~~~lp---------~~  186 (294)
                      .|+.+|||+.+.+|.=+..+.     .    .|++-|....               ++.+...|+...|         ..
T Consensus       154 ~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~~~  233 (375)
T KOG2198|consen  154 KPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGNDKE  233 (375)
T ss_pred             CCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCchhh
Confidence            478899999999998554443     2    6778787761               2222222222221         12


Q ss_pred             CCCccEEEEcccccC------C-C-----------------HHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHH
Q 022592          187 SSSVDVAVFCLSLMG------I-N-----------------FPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKF  242 (294)
Q Consensus       187 ~~~fD~Vi~~~~l~~------~-~-----------------~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~  242 (294)
                      ...||-|++.---.+      . +                 -...+....++||+||.++.+.-.-.-..     +..-+
T Consensus       234 ~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpie-----NEaVV  308 (375)
T KOG2198|consen  234 QLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPIE-----NEAVV  308 (375)
T ss_pred             hhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCchh-----hHHHH
Confidence            345777765322211      0 1                 12578888999999999999864322211     33455


Q ss_pred             HHHHHHCCCeE
Q 022592          243 SKAVCDLGFAP  253 (294)
Q Consensus       243 ~~~l~~~Gf~~  253 (294)
                      ..+|+..|-.+
T Consensus       309 ~~~L~~~~~~~  319 (375)
T KOG2198|consen  309 QEALQKVGGAV  319 (375)
T ss_pred             HHHHHHhcCcc
Confidence            67777766433

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=83.39  E-value=12  Score=33.02  Aligned_cols=112  Identities=15%  Similarity=0.129  Sum_probs=58.4

Q ss_pred             CCCEEEEEcCcccH-HHHHhc---cceEEEeccC--------------CCCcEEEccCCC-CCCC-CCCccEEEEccccc
Q 022592          141 PSLVIADFGCGDAR-LAKSVK---NKVFSFDLVS--------------NDPSVIACDMSN-TPLN-SSSVDVAVFCLSLM  200 (294)
Q Consensus       141 ~~~~VLDiGcG~G~-~~~~l~---~~v~gvD~s~--------------~~~~~~~~d~~~-lp~~-~~~fD~Vi~~~~l~  200 (294)
                      .+.+||-||-+.-. ++..+.   .+|+.+|+.+              -.+.....|+.+ +|-. .++||+++.....-
T Consensus        44 ~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDPPyT  123 (243)
T PF01861_consen   44 EGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDPPYT  123 (243)
T ss_dssp             TT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE---SS
T ss_pred             cCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCCCCC
Confidence            57789999966543 222222   5899999987              146677888865 4421 47899988754422


Q ss_pred             CCCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCH---HHHHHHHHHCCCeEEEEec
Q 022592          201 GINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADP---NKFSKAVCDLGFAPVSKDF  258 (294)
Q Consensus       201 ~~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~---~~~~~~l~~~Gf~~~~~~~  258 (294)
                      -....-++......|+..|...+..+....      .+.   ..+.+.+.+.||.+..+-.
T Consensus       124 ~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~------~s~~~~~~~Q~~l~~~gl~i~dii~  178 (243)
T PF01861_consen  124 PEGLKLFLSRGIEALKGEGCAGYFGFTHKE------ASPDKWLEVQRFLLEMGLVITDIIP  178 (243)
T ss_dssp             HHHHHHHHHHHHHTB-STT-EEEEEE-TTT--------HHHHHHHHHHHHTS--EEEEEEE
T ss_pred             HHHHHHHHHHHHHHhCCCCceEEEEEecCc------CcHHHHHHHHHHHHHCCcCHHHHHh
Confidence            223457888999999887744333332211      122   3677888899998888543

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known

Probab=82.92  E-value=12  Score=30.93  Aligned_cols=72  Identities=19%  Similarity=0.341  Sum_probs=49.7

Q ss_pred             ccCCCCC----CCCCCccEEEEcccccC-----C--C-------HHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCH
Q 022592          178 CDMSNTP----LNSSSVDVAVFCLSLMG-----I--N-------FPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADP  239 (294)
Q Consensus       178 ~d~~~lp----~~~~~fD~Vi~~~~l~~-----~--~-------~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~  239 (294)
                      .|+..+.    +....||.|+.++.--.     .  +       ...++..+..+|+++|.+.|+-.....      ++.
T Consensus        60 VDat~l~~~~~~~~~~FDrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p------y~~  133 (166)
T PF10354_consen   60 VDATKLHKHFRLKNQRFDRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQP------YDS  133 (166)
T ss_pred             CCCCcccccccccCCcCCEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC------Ccc
Confidence            3555443    34678999998876544     1  1       247899999999999999997543322      222


Q ss_pred             HHHHHHHHHCCCeEEE
Q 022592          240 NKFSKAVCDLGFAPVS  255 (294)
Q Consensus       240 ~~~~~~l~~~Gf~~~~  255 (294)
                      =.+..+...+||.+..
T Consensus       134 W~i~~lA~~~gl~l~~  149 (166)
T PF10354_consen  134 WNIEELAAEAGLVLVR  149 (166)
T ss_pred             ccHHHHHHhcCCEEEE
Confidence            3456778889998877

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=82.73  E-value=7  Score=36.65  Aligned_cols=87  Identities=23%  Similarity=0.380  Sum_probs=53.4

Q ss_pred             CCCCEEEEEcCcc-cHHHHHhc----c-ceEEEeccCCC---------CcEEEccCCC-C-----CC-CCCCccEEEEcc
Q 022592          140 SPSLVIADFGCGD-ARLAKSVK----N-KVFSFDLVSND---------PSVIACDMSN-T-----PL-NSSSVDVAVFCL  197 (294)
Q Consensus       140 ~~~~~VLDiGcG~-G~~~~~l~----~-~v~gvD~s~~~---------~~~~~~d~~~-l-----p~-~~~~fD~Vi~~~  197 (294)
                      .++.+||.+|||. |..+..++    . .++++|.++..         ..++...-.+ +     .+ ....+|+|+-+-
T Consensus       183 ~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~v  262 (386)
T cd08283         183 KPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDVCIDAV  262 (386)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCCEEEECC
Confidence            4667899999987 66666554    2 48888877521         1222111110 0     11 123689988753


Q ss_pred             ccc----------------CCCHHHHHHHHHHhcCcCcEEEEEee
Q 022592          198 SLM----------------GINFPNYLQEAQRVLKPSGWLLIAEV  226 (294)
Q Consensus       198 ~l~----------------~~~~~~~l~el~r~LkpgG~l~i~e~  226 (294)
                      .-+                +.+....+.++.++|+|+|.+++...
T Consensus       263 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~  307 (386)
T cd08283         263 GMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGV  307 (386)
T ss_pred             CCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcC
Confidence            211                12456788999999999999998753

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown

Probab=81.57  E-value=4  Score=32.32  Aligned_cols=95  Identities=16%  Similarity=0.161  Sum_probs=49.6

Q ss_pred             HHHHhhccCCCCEEEEEcCcccH-HHHHhc---cceEEEeccCC----CCcEEEccCCCCCCC-CCCccEEEEcccccCC
Q 022592          132 IVKWLKDHSPSLVIADFGCGDAR-LAKSVK---NKVFSFDLVSN----DPSVIACDMSNTPLN-SSSVDVAVFCLSLMGI  202 (294)
Q Consensus       132 ~~~~l~~~~~~~~VLDiGcG~G~-~~~~l~---~~v~gvD~s~~----~~~~~~~d~~~lp~~-~~~fD~Vi~~~~l~~~  202 (294)
                      +.+++.......+|+|||-|.=. .+..|.   -.|+++|+.+.    .+.++..|+.+..+. -...|+|.+...  ..
T Consensus         4 ~a~~ia~~~~~~kiVEVGiG~~~~vA~~L~~~G~dV~~tDi~~~~a~~g~~~v~DDif~P~l~iY~~a~lIYSiRP--P~   81 (127)
T PF03686_consen    4 FAEYIARLNNYGKIVEVGIGFNPEVAKKLKERGFDVIATDINPRKAPEGVNFVVDDIFNPNLEIYEGADLIYSIRP--PP   81 (127)
T ss_dssp             HHHHHHHHS-SSEEEEET-TT--HHHHHHHHHS-EEEEE-SS-S----STTEE---SSS--HHHHTTEEEEEEES----T
T ss_pred             HHHHHHHhCCCCcEEEECcCCCHHHHHHHHHcCCcEEEEECcccccccCcceeeecccCCCHHHhcCCcEEEEeCC--Ch
Confidence            44445433345599999999754 344554   27999999987    888999999874322 134788876432  12


Q ss_pred             CHHHHHHHHHHhcCcCcEEEEEeecCCC
Q 022592          203 NFPNYLQEAQRVLKPSGWLLIAEVKSRF  230 (294)
Q Consensus       203 ~~~~~l~el~r~LkpgG~l~i~e~~~~~  230 (294)
                      +.+..+.++++.+  |.-++|..+....
T Consensus        82 El~~~il~lA~~v--~adlii~pL~~e~  107 (127)
T PF03686_consen   82 ELQPPILELAKKV--GADLIIRPLGGES  107 (127)
T ss_dssp             TSHHHHHHHHHHH--T-EEEEE-BTTB-
T ss_pred             HHhHHHHHHHHHh--CCCEEEECCCCCC
Confidence            4455555555533  5677776655433

; PDB: 2K4M_A.

>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B

Probab=81.27  E-value=1.9  Score=35.10  Aligned_cols=91  Identities=15%  Similarity=0.223  Sum_probs=44.8

Q ss_pred             HHHHhhccCCCCEEEEEcCcccHHHHHhc-----cceEEEeccC--------CCCcEEEccCCC-CCC---CCCCccEEE
Q 022592          132 IVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS--------NDPSVIACDMSN-TPL---NSSSVDVAV  194 (294)
Q Consensus       132 ~~~~l~~~~~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~--------~~~~~~~~d~~~-lp~---~~~~fD~Vi  194 (294)
                      +...+... + .-|||+|=|+|+.--.|.     ..++.+|-.-        +.-.++.+|+.+ +|.   -....-++.
T Consensus        21 a~~~v~~~-~-G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~hp~~~P~~~~~ilGdi~~tl~~~~~~g~~a~laH   98 (160)
T PF12692_consen   21 AAAQVAGL-P-GPVLELGLGNGRTYDHLREIFPDRRIYVFDRALACHPSSTPPEEDLILGDIRETLPALARFGAGAALAH   98 (160)
T ss_dssp             HHHHTTT----S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S-GGG---GGGEEES-HHHHHHHHHHH-S-EEEEE
T ss_pred             HHHHhcCC-C-CceEEeccCCCccHHHHHHhCCCCeEEEEeeecccCCCCCCchHheeeccHHHHhHHHHhcCCceEEEE
Confidence            34444433 3 479999999998665554     4788888543        345688888864 332   122233333


Q ss_pred             EcccccCCCHH-----HHHHHHHHhcCcCcEEEEE
Q 022592          195 FCLSLMGINFP-----NYLQEAQRVLKPSGWLLIA  224 (294)
Q Consensus       195 ~~~~l~~~~~~-----~~l~el~r~LkpgG~l~i~  224 (294)
                      +....+..+..     .+-.-+..+|.|||+++-.
T Consensus        99 aD~G~g~~~~d~a~a~~lspli~~~la~gGi~vS~  133 (160)
T PF12692_consen   99 ADIGTGDKEKDDATAAWLSPLIAPVLAPGGIMVSG  133 (160)
T ss_dssp             E----S-HHHHHHHHHHHHHHHGGGEEEEEEEEES
T ss_pred             eecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeC
Confidence            33332221111     2223456789999988774

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	294
2zfu_A	215	Structure Of The Methyltransferase-Like Domain Of N		3e-54

>pdb|2ZFU|A Chain A, Structure Of The Methyltransferase-Like Domain Of Nucleomethylin Length = 215

Iteration: 1
 Score =  208 bits (529), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 108/221 (48%), Positives = 132/221 (59%), Gaps = 7/221 (3%)
Query: 75  MRARLSGGHFRMLNEKLYTCTGKEALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIVK 134
           M  RL G  FR LNE+LY+     A   F E+P  F +YH G+Q Q+  WP  PV+ I +
Sbjct: 1   MAQRLDGARFRYLNEQLYSGPSSAAQRLFQEDPEAFLLYHRGFQSQVKKWPLQPVDRIAR 60
Query: 135 WLKDHSPSLVIADFGCGDARLAKSVKNKVFSFDLVSNDPSVIACDMSNTPLNSSSVDVAV 194
            L+    SLV+ADFGCGD RLA S++N V  FDL S DP V  CDM+  PL   SVDVAV
Sbjct: 61  DLRQRPASLVVADFGCGDCRLASSIRNPVHCFDLASLDPRVTVCDMAQVPLEDESVDVAV 120
Query: 195 FCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPV 254
           FCLSLMG N  ++L+EA RVLKP G L +AEV SRF+      D   F +AV  LGF  V
Sbjct: 121 FCLSLMGTNIRDFLEEANRVLKPGGLLKVAEVSSRFE------DVRTFLRAVTKLGFKIV 174
Query: 255 SKDFSNKMFIMFYFXXXX-XXXXXXXXIQWPELKPCLYKRR 294
           SKD +N  F +F F             +   +L+PCLYKRR
Sbjct: 175 SKDLTNSHFFLFDFQKTGPPLVGPKAQLSGLQLQPCLYKRR 215

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	294
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	2e-92
3i9f_A	170	Putative type 11 methyltransferase; structural gen	6e-13
3ege_A	261	Putative methyltransferase from antibiotic biosyn	2e-09
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	2e-09
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	2e-09
3f4k_A	257	Putative methyltransferase; structural genomics, P	5e-09
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	6e-09
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	8e-09
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	2e-08
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	2e-08
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	3e-08
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	7e-08
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	8e-08
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	2e-07
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	3e-07
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	4e-07
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	5e-07
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	6e-07
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	8e-07
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	1e-06
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	3e-06
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	4e-06
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	5e-06
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	6e-06
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	7e-06
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	1e-05
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	1e-05
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	1e-05
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	2e-05
1xxl_A	239	YCGJ protein; structural genomics, protein structu	4e-05
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	4e-05
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	4e-05
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	4e-05
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	2e-04
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	2e-04
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	3e-04
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	4e-04

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} Length = 215

 Score =  272 bits (696), Expect = 2e-92
 Identities = 109/221 (49%), Positives = 135/221 (61%), Gaps = 7/221 (3%)

Query: 75  MRARLSGGHFRMLNEKLYTCTGKEALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIVK 134
           M  RL G  FR LNE+LY+     A   F E+P  F +YH G+Q Q+  WP  PV+ I +
Sbjct: 1   MAQRLDGARFRYLNEQLYSGPSSAAQRLFQEDPEAFLLYHRGFQSQVKKWPLQPVDRIAR 60

Query: 135 WLKDHSPSLVIADFGCGDARLAKSVKNKVFSFDLVSNDPSVIACDMSNTPLNSSSVDVAV 194
            L+    SLV+ADFGCGD RLA S++N V  FDL S DP V  CDM+  PL   SVDVAV
Sbjct: 61  DLRQRPASLVVADFGCGDCRLASSIRNPVHCFDLASLDPRVTVCDMAQVPLEDESVDVAV 120

Query: 195 FCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPV 254
           FCLSLMG N  ++L+EA RVLKP G L +AEV SRF+      D   F +AV  LGF  V
Sbjct: 121 FCLSLMGTNIRDFLEEANRVLKPGGLLKVAEVSSRFE------DVRTFLRAVTKLGFKIV 174

Query: 255 SKDFSNKMFIMFYFKKKEK-QNSKSKEIQWPELKPCLYKRR 294
           SKD +N  F +F F+K          ++   +L+PCLYKRR
Sbjct: 175 SKDLTNSHFFLFDFQKTGPPLVGPKAQLSGLQLQPCLYKRR 215

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170

 Score = 64.7 bits (158), Expect = 6e-13
 Identities = 24/167 (14%), Positives = 55/167 (32%), Gaps = 36/167 (21%)

Query: 132 IVKWLKDHSPSLVIADFGCGDARLAKSVKNKVFSFDLVSNDPSVIACDMS---------- 181
            +  + +     VI D+GCG+           +   L+     +   D++          
Sbjct: 9   YLPNIFE-GKKGVIVDYGCGNGF---------YCKYLLEFATKLYCIDINVIALKEVKEK 58

Query: 182 ---------NTPLNSSSVDVAVFCLSLMGINFPN-YLQEAQRVLKPSGWLLIAEVKSRFD 231
                       +  +SVD  +F  S   ++     + E +R+LK  G ++I + +   +
Sbjct: 59  FDSVITLSDPKEIPDNSVDFILFANSFHDMDDKQHVISEVKRILKDDGRVIIIDWRKE-N 117

Query: 232 PNTGGADPNKFSKAVCDL---GFAPVSK-DFSNKMFIMFYFKKKEKQ 274
              G     +  +         F    + + +   F +   K+K  +
Sbjct: 118 TGIGPPLSIRMDEKDYMGWFSNFVVEKRFNPTPYHFGLV-LKRKTSE 163

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261

 Score = 56.4 bits (136), Expect = 2e-09
 Identities = 27/142 (19%), Positives = 49/142 (34%), Gaps = 37/142 (26%)

Query: 108 ALFDMYHSGYQEQMSHWPELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVKNKVFSFD 167
           ++++     Y +       + VN I+  L     S++ AD G G            +S  
Sbjct: 3   SIYNSIGKQYSQTRVPDIRI-VNAIINLLNLPKGSVI-ADIGAG---------TGGYSVA 51

Query: 168 LVSNDPSVIACDMS---------------------NTPLNSSSVDVAVFCLSLMGINFPN 206
           L +    V A + S                     N  L   SVD  +  L++   +F +
Sbjct: 52  LANQGLFVYAVEPSIVMRQQAVVHPQVEWFTGYAENLALPDKSVDGVISILAIH--HFSH 109

Query: 207 Y---LQEAQRVLKPSGWLLIAE 225
                QE QR+++    +L+  
Sbjct: 110 LEKSFQEMQRIIRDGTIVLLTF 131

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219

 Score = 55.6 bits (134), Expect = 2e-09
 Identities = 33/218 (15%), Positives = 70/218 (32%), Gaps = 51/218 (23%)

Query: 104 NENPALFDMYHSGYQEQMSHWPELPV-NIIVKWLKDHS---PSLVIADFGCG----DARL 155
           +EN   FD   +   +++S     P+  II + + +         I D G G       L
Sbjct: 3   SENKKKFDKKGAKNMDEISKTLFAPIYPIIAENIINRFGITAGTCI-DIGSGPGALSIAL 61

Query: 156 AKSVKNKVFSFDL----------------VSNDPSVIACDMSNTPLNSSSVDVAVFCLSL 199
           AK     + + D                 +++   ++  D+ N P+  +  D+ V   S+
Sbjct: 62  AKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDNYADLIVSRGSV 121

Query: 200 MGINFPNY---LQEAQRVLKPSGWLLIAEVKSRFDP---------------------NTG 235
               + +     +E  R+LK  G   I       +                      N  
Sbjct: 122 F--FWEDVATAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNRKNIS 179

Query: 236 GADPNKFSKAVCDLGFAPVSKDFSNKMFIMFYFKKKEK 273
             +  +F   + ++G +       ++ F +   K  ++
Sbjct: 180 QENVERFQNVLDEIGISSYEIILGDEGFWIIISKTDQE 217

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220

 Score = 55.6 bits (134), Expect = 2e-09
 Identities = 27/226 (11%), Positives = 71/226 (31%), Gaps = 58/226 (25%)

Query: 96  GKEALDYFNENPALFD----MYHSGYQEQMSHWPELPVNIIVKWLKDHSPSLVIADFGCG 151
           G E    F+E    +D         Y+E  +H+ ++     ++ + +      + +FG G
Sbjct: 2   GTEFNGLFDEWAHTYDSFVQGEDIQYKEVFAHYEDI-----LEDVVNK-SFGNVLEFGVG 55

Query: 152 DARLAKSVKNKVFSFDLVSNDPS----------------VIACDMSNTPLNSSSVDVAVF 195
              L   +     +   +  +PS                +   D  +  + +S +D  V 
Sbjct: 56  TGNLTNKLLLAGRTVYGI--EPSREMRMIAKEKLPKEFSITEGDFLSFEVPTS-IDTIVS 112

Query: 196 CLSLMGINFPNY-----LQEAQRVLKPSGWLLIAEV----------------KSRFDPNT 234
             +    +  +      + +  ++L   G ++ A+                 +  F    
Sbjct: 113 TYAFH--HLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLA 170

Query: 235 GGADPNKFS-----KAVC-DLGFAPVSKDFSNKMFIMFYFKKKEKQ 274
                  ++     + +  + GF       ++ +++M   K+ E  
Sbjct: 171 NDLQTEYYTRIPVMQTIFENNGFHVTFTRLNHFVWVMEATKQLEHH 216

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257

 Score = 54.9 bits (132), Expect = 5e-09
 Identities = 24/111 (21%), Positives = 42/111 (37%), Gaps = 20/111 (18%)

Query: 136 LKDHSPSLVIADFGCG---DAR-LAKSVKNKVFSFDL----------------VSNDPSV 175
           + + +    IAD GCG       LA  VK ++   DL                 ++    
Sbjct: 41  INELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKG 100

Query: 176 IACDMSNTPLNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEV 226
           I   M N P  +  +D+     ++  I F   + E  + LK  G++ ++E 
Sbjct: 101 ITGSMDNLPFQNEELDLIWSEGAIYNIGFERGMNEWSKYLKKGGFIAVSEA 151

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267

 Score = 54.9 bits (132), Expect = 6e-09
 Identities = 25/111 (22%), Positives = 43/111 (38%), Gaps = 20/111 (18%)

Query: 136 LKDHSPSLVIADFGCG---DAR-LAKSVKNKVFSFDL----------------VSNDPSV 175
           + + +   +IAD GCG       LA  V  +V   D                 + N  + 
Sbjct: 41  IDNLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTG 100

Query: 176 IACDMSNTPLNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEV 226
           I   M + P  +  +D+     ++  I F   L E ++ LK  G+L ++E 
Sbjct: 101 IVGSMDDLPFRNEELDLIWSEGAIYNIGFERGLNEWRKYLKKGGYLAVSEC 151

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218

 Score = 53.8 bits (129), Expect = 8e-09
 Identities = 15/149 (10%), Positives = 40/149 (26%), Gaps = 29/149 (19%)

Query: 97  KEALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIVKWLKDHSPSLVIADFGCGDARLA 156
           +  L Y+    + +D            + +      ++ L+  +    + +   G     
Sbjct: 9   ESQLSYYRARASEYD-------ATFVPYMDSAAPAALERLRAGNIRGDVLELASGTGYWT 61

Query: 157 KSVKNKVFSFDLVSNDPS----------------VIACDMSNTPLNSSSVDVAVFCLSLM 200
           + +         +  D S                    D+ +   +    D   F   L 
Sbjct: 62  RHLSGLADRVTAL--DGSAEMIAEAGRHGLDNVEFRQQDLFDWTPDRQ-WDAVFFAHWLA 118

Query: 201 GI---NFPNYLQEAQRVLKPSGWLLIAEV 226
            +    F  + +  +  + P G +   +V
Sbjct: 119 HVPDDRFEAFWESVRSAVAPGGVVEFVDV 147

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253

 Score = 53.4 bits (128), Expect = 2e-08
 Identities = 25/136 (18%), Positives = 47/136 (34%), Gaps = 18/136 (13%)

Query: 106 NPALFDMYHSGYQEQMSHWPELPVNIIVKWLKDHSPSLVIADFGCGD----ARLAKSVKN 161
           +   F+ Y    + +         + + K L D +   V+ D GCG        A+    
Sbjct: 10  DKHFFEQYSQMPRSKEGLKAAGEWHELKKMLPDFNQKTVL-DLGCGFGWHCIYAAEHGAK 68

Query: 162 KVFSFDL------------VSNDPSVIACDMSNTPLNSSSVDVAVFCLSLMGI-NFPNYL 208
           KV   DL             S         + +  +   + +V +  L+L  I +F +  
Sbjct: 69  KVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVVLSSLALHYIASFDDIC 128

Query: 209 QEAQRVLKPSGWLLIA 224
           ++    LK SG  + +
Sbjct: 129 KKVYINLKSSGSFIFS 144

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219

 Score = 52.4 bits (126), Expect = 2e-08
 Identities = 28/143 (19%), Positives = 49/143 (34%), Gaps = 29/143 (20%)

Query: 110 FDMYHSGYQEQMSHWPELPVNIIVKWLKDHSPSLVIADFGCGD----ARLAKSVKN--KV 163
           FD       +  S         ++K        + + D G G       L+K V    KV
Sbjct: 7   FDPSKIKKLDDPSRLELFDPEKVLKEFGLK-EGMTVLDVGTGAGFYLPYLSKMVGEKGKV 65

Query: 164 FSFDL----------------VSNDPSVIACDMSNTPLNSSSVDVAVFCLSLMGINFPN- 206
           ++ D+                + N   V+  + +  PL  ++VD      +         
Sbjct: 66  YAIDVQEEMVNYAWEKVNKLGLKN-VEVLKSEENKIPLPDNTVDFIFMAFTFH--ELSEP 122

Query: 207 --YLQEAQRVLKPSGWLLIAEVK 227
             +L+E +RV KP  +L I + K
Sbjct: 123 LKFLEELKRVAKPFAYLAIIDWK 145

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242

 Score = 52.2 bits (125), Expect = 3e-08
 Identities = 24/161 (14%), Positives = 46/161 (28%), Gaps = 40/161 (24%)

Query: 101 DYFNENPALFDMYHSGYQEQMSH-WPELPVNIIVKWLKDH-SPSLVIADFGCGDARLAKS 158
           ++       +D     + +     W     + I+ + + +      + D GCGD      
Sbjct: 11  NWHESAEKKWDSSAEFWNQNSQEMWDSGSRSTIIPFFEQYVKKEAEVLDVGCGDGY---- 66

Query: 159 VKNKVFSFDLVSNDPSVIACDMS------------------------NTPLNSSSVDVAV 194
                 ++ L       +  D+S                        + P  +   +  +
Sbjct: 67  -----GTYKLSRTGYKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIM 121

Query: 195 FCLSLMGINFPNY---LQEAQRVLKPSGWLLIAEVKSRFDP 232
              SL           L E +RVLK  G+  IA +     P
Sbjct: 122 AINSLE--WTEEPLRALNEIKRVLKSDGYACIAILGPTAKP 160

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219

 Score = 51.0 bits (122), Expect = 7e-08
 Identities = 31/184 (16%), Positives = 61/184 (33%), Gaps = 27/184 (14%)

Query: 86  MLNEKLYTCTGKEALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIVKWLKDHSPSLVI 145
           M ++K++          F      ++ +   ++       +         +K   P    
Sbjct: 1   MGSDKIHHHH-HHMWHIFERFVNEYERWFLVHRFAYLSELQA--------VKCLLPEGRG 51

Query: 146 ADFGCGDARLAKSVKNKV---FSFDLV----SNDPSVIACDMSNTPLNSSSVDVAVFCLS 198
            + G G  R A  +K K+    S  +          V+     N PL   S D A+   +
Sbjct: 52  VEIGVGTGRFAVPLKIKIGVEPSERMAEIARKRGVFVLKGTAENLPLKDESFDFALMVTT 111

Query: 199 LMGINFPNY---LQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVS 255
           +      +    L+EA R+LK  G+L++         +       ++ K      F   +
Sbjct: 112 IC--FVDDPERALKEAYRILKKGGYLIVG------IVDRESFLGREYEKNKEKSVFYKNA 163

Query: 256 KDFS 259
           + FS
Sbjct: 164 RFFS 167

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263

 Score = 51.1 bits (122), Expect = 8e-08
 Identities = 30/155 (19%), Positives = 43/155 (27%), Gaps = 43/155 (27%)

Query: 110 FDMYHSGYQEQMSHWPELPVNI---IVKWLKDHSPSLVIADFGCGDARLAKSVKNKVFSF 166
                  Y    +H PE+   I   +   +       V  + G G  R          + 
Sbjct: 5   LLRAAYAYDRLRAHPPEVAGQIATAMASAVHPKGEEPVFLELGVGTGR---------IAL 55

Query: 167 DLVSNDPSVIACDMS--------------------------NTPLNSSSVDVAVFCLSLM 200
            L++     IA D                              PL   SV   +      
Sbjct: 56  PLIARGYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLWH 115

Query: 201 GINFPNY---LQEAQRVLKPSGWLLIAEVKSRFDP 232
               P++   L EA RVLKP G LL    ++   P
Sbjct: 116 --LVPDWPKVLAEAIRVLKPGGALLEGWDQAEASP 148

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243

 Score = 49.8 bits (119), Expect = 2e-07
 Identities = 24/139 (17%), Positives = 43/139 (30%), Gaps = 22/139 (15%)

Query: 105 ENPALFDMYHSGYQ--EQMSHWPELPVNIIVKWLKDHSPSLVIADFGCGD----ARLAKS 158
           + P  F  Y    +  E +    E P   +   L +     ++ D GCG         + 
Sbjct: 8   DQPDFFAGYSQLGRSIEGLDGAAEWPA--LRAMLPEVGGLRIV-DLGCGFGWFCRWAHEH 64

Query: 159 VKNKVFSFDL------------VSNDPSVIACDMSNTPLNSSSVDVAVFCLSLMGI-NFP 205
             + V   DL                 +    D+    L   S D+A   L+L  + +  
Sbjct: 65  GASYVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFDLAYSSLALHYVEDVA 124

Query: 206 NYLQEAQRVLKPSGWLLIA 224
              +   + L P G  + +
Sbjct: 125 RLFRTVHQALSPGGHFVFS 143

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254

 Score = 49.7 bits (118), Expect = 3e-07
 Identities = 27/157 (17%), Positives = 56/157 (35%), Gaps = 26/157 (16%)

Query: 97  KEALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIVKWLKDHSPSL--VIADFGCGDAR 154
            +AL+Y+   PA       G      H  ++ +     ++            D G G  R
Sbjct: 51  GKALEYWRTVPATVSGVLGGM----DHVHDVDIEGSRNFIASLPGHGTSRALDCGAGIGR 106

Query: 155 LAKSVKNKVF-SFDLVSNDPSVIA----------------CDMSNTPLNSSSVDVAVFCL 197
           + K++  K++ + DL+     ++                   M    L  ++ D+ V   
Sbjct: 107 ITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQW 166

Query: 198 SLMGIN---FPNYLQEAQRVLKPSGWLLIAEVKSRFD 231
           + + +    F  + +  Q+ L P+G++   E  S  D
Sbjct: 167 TAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGD 203

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195

 Score = 48.6 bits (116), Expect = 4e-07
 Identities = 25/142 (17%), Positives = 49/142 (34%), Gaps = 20/142 (14%)

Query: 101 DYFNENPALFDMYHSGYQEQMSHWPELPVNIIVKWLKDHSPS-LVIADFGCGDARLAKSV 159
           +  + NPA  + Y   ++   +   ++      + +   +P    I D GCG  R+   +
Sbjct: 7   ELTDNNPAHSENYAQRWRNLAAAGNDIYG--EARLIDAMAPRGAKILDAGCGQGRIGGYL 64

Query: 160 KNK---VFSFDLVSN----------DPSVIACDMSNTPLNSSSVDVAVFCLSLMGI---- 202
             +   V   DL             +   +  D+S   ++ +  D+ V   ++MG     
Sbjct: 65  SKQGHDVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVSAGNVMGFLAED 124

Query: 203 NFPNYLQEAQRVLKPSGWLLIA 224
                L    R L   G  +I 
Sbjct: 125 GREPALANIHRALGADGRAVIG 146

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227

 Score = 48.6 bits (116), Expect = 5e-07
 Identities = 19/144 (13%), Positives = 43/144 (29%), Gaps = 21/144 (14%)

Query: 98  EALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIVKWLKDHSPSLVIADFGCGDARLAK 157
             LD +++N      +    +           +  +           + D GCG+  L +
Sbjct: 12  ALLDSWHQN---AQAWIDAVRHGAIESRRQVTDQAILLAILGRQPERVLDLGCGEGWLLR 68

Query: 158 SVKN---KVFSFDL--------------VSNDPSVIACDMSNTPLNSSSVDVAVFCLSLM 200
           ++ +   +    D                 +  S      +  P+     D+     +L+
Sbjct: 69  ALADRGIEAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKD-YDLICANFALL 127

Query: 201 GINFPNYLQEAQRVLKPSGWLLIA 224
             +    L   + +L P G L+I 
Sbjct: 128 HQDIIELLSAMRTLLVPGGALVIQ 151

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203

 Score = 48.3 bits (115), Expect = 6e-07
 Identities = 12/96 (12%), Positives = 32/96 (33%), Gaps = 16/96 (16%)

Query: 145 IADFGCGDARLAKSVKN---KVFSFDLVSN----------DPSVIACDMSNTPLNSSSVD 191
           I D G G  R    + +   ++   +  +             +     +++   +     
Sbjct: 45  ILDVGSGTGRWTGHLASLGHQIEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWA 104

Query: 192 VAVFCLSLMGI---NFPNYLQEAQRVLKPSGWLLIA 224
             +   SL+ +     P+ L   +  ++  G LL++
Sbjct: 105 GLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLMS 140

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260

 Score = 48.3 bits (115), Expect = 8e-07
 Identities = 35/168 (20%), Positives = 67/168 (39%), Gaps = 31/168 (18%)

Query: 86  MLNEKLYTCTGKEAL---DYFNENPALFD-MYHSGYQEQMSHWPELPVNIIVKWLKDHSP 141
           M ++K++       L   ++++     +D MY +    +   +  L  + + ++LK    
Sbjct: 1   MGSDKIHHHHHHMKLRSWEFYDRIARAYDSMYET---PKWKLYHRLIGSFLEEYLK---N 54

Query: 142 SLVIADFGCGDARLAKSVKNKVFSFDLVSNDPS--------------VIACDMSNTPLNS 187
              + D G G  + +  ++ + F  ++V  DPS              V+     + P  S
Sbjct: 55  PCRVLDLGGGTGKWSLFLQERGF--EVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPS 112

Query: 188 SSVDVAVFCLSLMGINFPNY---LQEAQRVLKPSGWLLIAEVKSRFDP 232
            + + AV  L  +     N      E +RVL P G LLIA V + +  
Sbjct: 113 GAFE-AVLALGDVLSYVENKDKAFSEIRRVLVPDG-LLIATVDNFYTF 158

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266

 Score = 47.9 bits (114), Expect = 1e-06
 Identities = 26/167 (15%), Positives = 57/167 (34%), Gaps = 33/167 (19%)

Query: 111 DMYHSGYQEQMSHWPELPVNIIVKWLKDHSPSLVIADFGCG----DARLAKSVKNKVFSF 166
           +   SG  E            I+  ++ +  S V+ D G G       + +         
Sbjct: 34  NYISSGGLEATKK--------ILSDIELNENSKVL-DIGSGLGGGCMYINEKYGAHTHGI 84

Query: 167 DL-------------VSNDPSVIACDMSNTPLNSSSVDVAVFCLSLMGINFPN---YLQE 210
           D+              +N     A D+       ++ D+     +++ ++  N     Q+
Sbjct: 85  DICSNIVNMANERVSGNNKIIFEANDILTKEFPENNFDLIYSRDAILALSLENKNKLFQK 144

Query: 211 AQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSKD 257
             + LKP+G LLI +  +    N      ++F + V    +  ++ +
Sbjct: 145 CYKWLKPTGTLLITDYCATEKENW----DDEFKEYVKQRKYTLITVE 187

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209

 Score = 46.0 bits (109), Expect = 3e-06
 Identities = 21/172 (12%), Positives = 52/172 (30%), Gaps = 22/172 (12%)

Query: 133 VKWLKDHSPSLVIADFGCG---DAR-LAKSVKNKVFSFDLVSN--------------DPS 174
           +K+  + +    + D G G       +      K +  ++                   +
Sbjct: 15  LKYCNESNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNFKLN 74

Query: 175 VIACDMSNTPLNSSSVDVAVFCLSLMGINFPN---YLQEAQRVLKPSGWLLIAEVKSRFD 231
           +   D+   P    S+       ++  +   +    + E +RVLKP G   I  + +  D
Sbjct: 75  ISKGDIRKLPFKDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFL-TTKD 133

Query: 232 PNTGGADPNKFSKAVCDLGFAPVSKDFSNKMFIMFYFKKKEKQNSKSKEIQW 283
                 +     + +       V   + +      YFK  +    + + ++ 
Sbjct: 134 ERYNKGEKIGEGEFLQLERGEKVIHSYVSLEEADKYFKDMKVLFKEDRVVER 185

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241

 Score = 46.2 bits (109), Expect = 4e-06
 Identities = 25/193 (12%), Positives = 63/193 (32%), Gaps = 33/193 (17%)

Query: 97  KEALDYFNENPALFDMYHSGYQEQ---MSHWPELPVNIIVKWLKDHSPSLVIADFGCGDA 153
            +A  Y+ + P   D    GY        +     +   ++   + + +    D G G  
Sbjct: 32  SKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPNKTGTSCALDCGAGIG 91

Query: 154 RLAKSVKNKVFSFDLVSNDPS--------------------VIACDMSNTPLNSSSVDVA 193
           R+ K +   +F  ++   D +                       C + +      S DV 
Sbjct: 92  RITKRLLLPLFR-EVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVI 150

Query: 194 VFCLSLMGINFP---NYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADP------NKFSK 244
                +  +       +L+  +  L+P+G ++I +  ++        D       +   +
Sbjct: 151 WIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRR 210

Query: 245 AVCDLGFAPVSKD 257
            +C  G + ++++
Sbjct: 211 IICSAGLSLLAEE 223

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269

 Score = 45.7 bits (108), Expect = 5e-06
 Identities = 24/134 (17%), Positives = 45/134 (33%), Gaps = 22/134 (16%)

Query: 106 NPALFDMYHSGYQEQMSHWPELPVNIIVKWLKDHSPSLVIADFGCGD----ARLAKSVKN 161
           +  +     +             +   ++   D   + V+ D GCG+       A ++  
Sbjct: 51  SAEMMQARRAFLDAGHYQPLRDAIVAQLRERLDDKATAVL-DIGCGEGYYTHAFADALPE 109

Query: 162 -KVFSFDL--------VSNDPSVIAC--DMSNTPLNSSSVDVAVFCLSLMGINFPNYLQE 210
              F  D+            P V  C       P + +S+D  +   +      P   +E
Sbjct: 110 ITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYA------PCKAEE 163

Query: 211 AQRVLKPSGWLLIA 224
             RV+KP GW++ A
Sbjct: 164 LARVVKPGGWVITA 177

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260

 Score = 45.6 bits (108), Expect = 6e-06
 Identities = 28/139 (20%), Positives = 44/139 (31%), Gaps = 26/139 (18%)

Query: 110 FDMYHSGYQEQMSHWPELPVNIIVKWLKDHSPSLVIADFGCGD----ARLAKSVKNKVFS 165
              +H  Y     H     +  +++         V+ D   G        A  VK KV +
Sbjct: 7   HHHHHHMYVTSQIHAKGSDLAKLMQIAALKGNEEVL-DVATGGGHVANAFAPFVK-KVVA 64

Query: 166 FDLVSN---------------DPSVIACDMSNTPLNSSSVDVAVFCLSLMGINFPNY--- 207
           FDL  +                   +  D    P       +    ++    +FPN    
Sbjct: 65  FDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFHIVTCRIAAH--HFPNPASF 122

Query: 208 LQEAQRVLKPSGWLLIAEV 226
           + EA RVLK  G LL+ + 
Sbjct: 123 VSEAYRVLKKGGQLLLVDN 141

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227

 Score = 45.3 bits (107), Expect = 7e-06
 Identities = 25/145 (17%), Positives = 51/145 (35%), Gaps = 27/145 (18%)

Query: 101 DYFNENPALFDMYHSGYQEQMSHWPELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK 160
           +Y+   P   D+    Y+ ++     L    ++K++K       + D  CG    +  ++
Sbjct: 5   EYYRVFPTYTDINSQEYRSRIETLEPL----LMKYMK---KRGKVLDLACGVGGFSFLLE 57

Query: 161 NKVFS---FDLVSN--------------DPSVIACDMSNTPLNSSSVDVAVFCLSLMGIN 203
           +  F     D+  +              +   I  D         + D  +F  S++   
Sbjct: 58  DYGFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFE 117

Query: 204 FPNY---LQEAQRVLKPSGWLLIAE 225
                   +E +RVLKPSG  ++  
Sbjct: 118 PLELNQVFKEVRRVLKPSGKFIMYF 142

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240

 Score = 44.9 bits (106), Expect = 1e-05
 Identities = 27/195 (13%), Positives = 57/195 (29%), Gaps = 25/195 (12%)

Query: 113 YHSGYQEQMSHWPELPVNIIVKWLKDHSPSLVIADFGCGD---ARLAKSVKNKVFSFDLV 169
           Y+  ++E+     EL    + +++        + D GCG      L K    +    D+ 
Sbjct: 13  YYFLFEEKFRGSRELVKARLRRYIPYFKGCRRVLDIGCGRGEFLELCKEEGIESIGVDIN 72

Query: 170 SN---------DPSVIACDMSNTPLNSSSVDVAVFCLSLMGINFPN---YLQEAQRVLKP 217
            +         +            L    +D  +    +  ++       L      +K 
Sbjct: 73  EDMIKFCEGKFNVVKSDAIEYLKSLPDKYLDGVMISHFVEHLDPERLFELLSLCYSKMKY 132

Query: 218 SGWLLIA--EVKSRFDPNTGGADPN---KFSKA-----VCDLGFAPVSKDFSNKMFIMFY 267
           S +++I      S +       DP              +  LGF  V  +F  +   +  
Sbjct: 133 SSYIVIESPNPTSLYSLINFYIDPTHKKPVHPETLKFILEYLGFRDVKIEFFEECEELTK 192

Query: 268 FKKKEKQNSKSKEIQ 282
             K +      + I+
Sbjct: 193 LAKIDSNTVSEEVIR 207

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276

 Score = 44.9 bits (106), Expect = 1e-05
 Identities = 26/140 (18%), Positives = 50/140 (35%), Gaps = 32/140 (22%)

Query: 113 YHSGYQEQMSHWPELPVNIIVKWLKDHSPSLVIADFGCG----DARLAKSVKN-KVFSFD 167
           Y      ++S   E  +  ++     + P   + + GCG       LAK+  + ++ S D
Sbjct: 10  YSEREALRLSEQAET-LEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSID 68

Query: 168 LVSNDPSVIA------------------CDMSNTPLNSSSVDVAVFCLSLMGINFPNY-- 207
           +    P  +                    ++ + P   SS D    C  L   +  +   
Sbjct: 69  I---SPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFVLE--HLQSPEE 123

Query: 208 -LQEAQRVLKPSGWLLIAEV 226
            L+  ++VLKP G + + E 
Sbjct: 124 ALKSLKKVLKPGGTITVIEG 143

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245

 Score = 44.3 bits (104), Expect = 1e-05
 Identities = 25/156 (16%), Positives = 41/156 (26%), Gaps = 51/156 (32%)

Query: 102 YFNENPALFDMYHSGYQEQMSHWPELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVKN 161
             N  P L+D   +  +  +   P              +P L + DF CG+    K    
Sbjct: 27  LVNSTPVLWD--ANVERAVVVDLPRF--------ELLFNPELPLIDFACGNGTQTKF--- 73

Query: 162 KVFSFDLVSNDPSVIACDMS----------------------------NTPLNSSSVDVA 193
                 L    P VI  D+S                               ++S   D  
Sbjct: 74  ------LSQFFPRVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDAN 127

Query: 194 VFC-LSLMGINFPN---YLQEAQRVLKPSGWLLIAE 225
           ++       I         Q  + +L   G + + E
Sbjct: 128 IYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIE 163

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211

 Score = 43.7 bits (103), Expect = 2e-05
 Identities = 23/143 (16%), Positives = 40/143 (27%), Gaps = 28/143 (19%)

Query: 97  KEALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIVKWLKDHSPSLVIADFGCGDARLA 156
            + L ++  N          Y E+      L      K+L +      I + GCG    A
Sbjct: 11  DDTLRFYRGNATA-------YAERQPRSATL-----TKFLGELPAGAKILELGCGAGYQA 58

Query: 157 KSVKNK---VFSFDLVSN---------DPSVIACDMSNTPLNSSSVDVAVFCLSLMGIN- 203
           +++      V + D                V            +  D       L+ +  
Sbjct: 59  EAMLAAGFDVDATDGSPELAAEASRRLGRPVRTMLFHQLDAIDA-YDAVWAHACLLHVPR 117

Query: 204 --FPNYLQEAQRVLKPSGWLLIA 224
               + L+   R LKP G    +
Sbjct: 118 DELADVLKLIWRALKPGGLFYAS 140

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239

 Score = 43.2 bits (102), Expect = 4e-05
 Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 5/62 (8%)

Query: 174 SVIACDMSNTPLNSSSVDVAVFCLSLMGINFPNY---LQEAQRVLKPSGWLLIAEVKSRF 230
                   + P    S D+     +    +F +    ++E  RVLK  G  L+ +  +  
Sbjct: 72  RFQQGTAESLPFPDDSFDIITCRYAAH--HFSDVRKAVREVARVLKQDGRFLLVDHYAPE 129

Query: 231 DP 232
           DP
Sbjct: 130 DP 131

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Length = 211

 Score = 42.9 bits (101), Expect = 4e-05
 Identities = 26/147 (17%), Positives = 44/147 (29%), Gaps = 35/147 (23%)

Query: 110 FDMYHSGYQEQMSHWPELPVNIIVKWLKDH------SPSLVIADFGCGDARLAKSVKNKV 163
           F      Y+     W   P+   V   ++        P   + + G G     + +    
Sbjct: 3   FASLAEAYEA----WYGTPLGAYVIAEEERALKGLLPPGESLLEVGAGTGYWLRRLPYP- 57

Query: 164 FSFDLVSNDPS---------------VIACDMSNTPLNSSSVDVAVFCLSLMGINFPNY- 207
                V  +PS                +       P    S DV +   +L      +  
Sbjct: 58  ---QKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLLFTTLE--FVEDVE 112

Query: 208 --LQEAQRVLKPSGWLLIAEVKSRFDP 232
             L EA+RVL+P G L++  +     P
Sbjct: 113 RVLLEARRVLRPGGALVVGVL-EALSP 138

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299

 Score = 43.5 bits (102), Expect = 4e-05
 Identities = 17/145 (11%), Positives = 38/145 (26%), Gaps = 43/145 (29%)

Query: 132 IVKWLKDH--SPSLVIADFGCGDARLAKSVKNKVFSFDLVSNDPSVIACDMS-------- 181
             K + ++      ++ D GCG       +  ++  F+       +I  D+S        
Sbjct: 25  FYKMIDEYHDGERKLLVDVGCGPGTATLQMAQELKPFE------QIIGSDLSATMIKTAE 78

Query: 182 ---------------------------NTPLNSSSVDVAVFCLSLMGINFPNYLQEAQRV 214
                                         ++   +D+          +F  + + A   
Sbjct: 79  VIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKIDMITAVECAHWFDFEKFQRSAYAN 138

Query: 215 LKPSGWLLIAEVKSRFDPNTGGADP 239
           L+  G + I        P+    D 
Sbjct: 139 LRKDGTIAIWGYADPIFPDYPEFDD 163

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199

 Score = 42.5 bits (100), Expect = 4e-05
 Identities = 28/156 (17%), Positives = 48/156 (30%), Gaps = 33/156 (21%)

Query: 121 MSHWPE----------LPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVKNKVFSFDLVS 170
           M    E             + +++ +K   P   + D GCG+ R +  +    +  D   
Sbjct: 3   MVIRDENYFTDKYELTRTHSEVLEAVKVVKPGKTL-DLGCGNGRNSLYLAANGYDVDAWD 61

Query: 171 NDPSVIA------------------CDMSNTPLNSSSVDVAVFCLSLMGIN---FPNYLQ 209
            +   IA                   D++N   +    D  +  + LM +     P  + 
Sbjct: 62  KNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQ-YDFILSTVVLMFLEAKTIPGLIA 120

Query: 210 EAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKA 245
             QR  KP G+ LI       D       P  F + 
Sbjct: 121 NMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEG 156

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Length = 286

 Score = 41.5 bits (97), Expect = 2e-04
 Identities = 21/153 (13%), Positives = 43/153 (28%), Gaps = 23/153 (15%)

Query: 110 FDMYHSGYQEQMSHWPELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVKNKVFSFDLV 169
              Y          +    ++  V           + D GCG  R +  +    +     
Sbjct: 89  LGFYCKKEDYFSKKYNTTAIHGDVVDAAKIISPCKVLDLGCGQGRNSLYLSLLGYDVTSW 148

Query: 170 SNDPSVIA-----------------CDMSNTPLNSSSVDVAVFCLSLMGIN---FPNYLQ 209
            ++ + IA                  D++   +   + D  V  +  M +N    P+ ++
Sbjct: 149 DHNENSIAFLNETKEKENLNISTALYDINAANIQ-ENYDFIVSTVVFMFLNRERVPSIIK 207

Query: 210 EAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKF 242
             +      G+ LI    S    +     P  F
Sbjct: 208 NMKEHTNVGGYNLIVAAMS--TDDVPCPLPFSF 238

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 15/131 (11%), Positives = 42/131 (32%), Gaps = 21/131 (16%)

Query: 112 MYHSGYQEQMSHWPELPVNIIVKWLKDHSPSLVIADFGCGDAR----LAKSVKNKVFSFD 167
           M+   + +    +   P + +V          ++     G+ R    LA     +V + D
Sbjct: 1   MWDERFSQSEYVYGTEPNDFLVSVANQIPQGKIL-CLAEGEGRNACFLASL-GYEVTAVD 58

Query: 168 LVSN--------------DPSVIACDMSNTPLNSSSVDVAVFCLSLMGIN-FPNYLQEAQ 212
             S                 + +  ++++  + + + +  V     +  +       +  
Sbjct: 59  QSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSIFCHLPSSLRQQLYPKVY 118

Query: 213 RVLKPSGWLLI 223
           + LKP G  ++
Sbjct: 119 QGLKPGGVFIL 129

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273

 Score = 40.5 bits (95), Expect = 3e-04
 Identities = 28/130 (21%), Positives = 44/130 (33%), Gaps = 28/130 (21%)

Query: 147 DFGCG----DARLAKSVKNKVFSFDL----------------VSNDPSVIACDMSNTPLN 186
           D GCG      RLA +   +V    +                ++N  +    D  + P  
Sbjct: 67  DVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFE 126

Query: 187 SSSVDVAVFCLSLMGINFPN---YLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFS 243
            +S D AV+ L     + P+    L+E  RVL+P G + IA+               +  
Sbjct: 127 DASFD-AVWALE-SLHHMPDRGRALREMARVLRPGGTVAIADFVLLAPVE---GAKKEAV 181

Query: 244 KAVCDLGFAP 253
            A    G   
Sbjct: 182 DAFRAGGGVL 191

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234

 Score = 40.1 bits (94), Expect = 4e-04
 Identities = 21/116 (18%), Positives = 35/116 (30%), Gaps = 22/116 (18%)

Query: 131 IIVKWLKDHSPSLVIADFGCGDARLAKSVKNKVFSFDLVSNDPS---------------- 174
           + V      + +  I D G G   L+  +  K         D S                
Sbjct: 34  VSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLK 93

Query: 175 --VIACDMSNTPLNSSSVDVAVFCLSLMGINFPNY---LQEAQRVLKPSGWLLIAE 225
              I  D S         D+ V  LS+  +   +     + +  +LK SG  + A+
Sbjct: 94  VKYIEADYSKYDFEEKY-DMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINAD 148

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	294
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	99.97
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.81
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.8
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.79
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.79
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.79
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.79
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.78
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.78
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.78
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.77
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.76
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.76
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.76
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.75
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.75
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.75
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.74
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.74
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.73
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.73
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.73
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.72
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.72
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.72
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.72
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.72
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.72
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.72
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.71
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.71
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.7
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.7
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.69
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.69
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.69
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.69
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.69
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.68
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.68
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.67
3ocj_A	305	Putative exported protein; structural genomics, PS	99.67
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.67
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.67
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.66
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	99.66
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.66
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.66
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.66
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.65
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.65
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.65
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.64
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.64
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.64
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.64
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.64
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.64
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	99.64
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.63
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	99.63
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.63
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.63
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.62
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.62
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.62
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.62
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.62
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.61
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.61
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.61
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.61
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.61
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.6
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.6
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.6
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.59
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.58
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	99.58
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.58
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.57
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.57
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.57
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	99.57
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.57
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.56
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.56
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	99.56
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.55
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.53
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.52
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.52
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.52
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.52
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	99.52
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.51
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.51
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.5
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.5
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.5
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.49
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.49
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.49
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.48
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.48
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.48
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.47
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.47
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.47
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	99.47
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.46
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.45
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.44
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.44
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.43
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.43
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.43
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.43
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.42
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	99.41
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.41
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.41
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.41
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.41
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	99.4
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	99.4
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.39
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.39
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.38
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.38
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.38
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.38
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.37
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.37
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.36
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.35
3sso_A	419	Methyltransferase; macrolide, natural product, ros	99.35
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.35
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.34
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.33
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.33
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.32
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.32
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.31
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.3
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.3
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.3
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.3
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.29
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	99.29
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.29
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.28
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.28
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.28
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	99.27
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.27
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.26
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.26
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	99.25
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.25
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.24
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.24
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.24
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.23
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	99.23
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.23
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.23
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	99.23
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.23
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.23
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.22
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.21
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.2
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.19
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.19
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.18
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.18
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.18
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.18
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.17
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	99.16
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.16
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.16
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.16
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.15
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.15
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.14
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.14
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.14
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	99.13
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.13
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.12
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.12
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.1
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.1
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.1
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.09
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	99.09
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	99.09
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.08
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.08
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.08
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.08
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.07
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.07
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.06
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.06
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	99.04
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.04
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.03
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.03
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.03
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.03
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.02
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.0
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	98.99
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	98.99
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	98.98
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	98.98
3k6r_A	278	Putative transferase PH0793; structural genomics,	98.97
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	98.96
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	98.96
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	98.95
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	98.94
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	98.94
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	98.93
2pt6_A	321	Spermidine synthase; transferase, structural genom	98.92
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	98.92
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	98.87
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	98.87
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	98.86
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	98.86
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	98.86
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	98.85
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	98.84
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	98.84
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.82
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	98.79
2o07_A	304	Spermidine synthase; structural genomics, structur	98.79
2i7c_A	283	Spermidine synthase; transferase, structural genom	98.78
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	98.78
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	98.77
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	98.76
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	98.76
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	98.74
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	98.73
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	98.72
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	98.71
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	98.7
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	98.68
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	98.66
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	98.63
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	98.59
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.57
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	98.56
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	98.55
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	98.49
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	98.49
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	98.47
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	98.39
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	98.34
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	98.33
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	98.33
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	98.33
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	98.31
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	98.3
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	98.29
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	98.29
3khk_A	544	Type I restriction-modification system methylation	98.27
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	98.26
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	98.23
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	98.2
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	98.17
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	98.16
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.13
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	98.08
3lkd_A	542	Type I restriction-modification system methyltrans	98.06
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	98.02
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	97.98
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	97.97
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	97.96
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	97.94
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	97.9
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	97.89
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	97.85
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	97.84
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	97.84
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	97.76
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	97.55
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	97.49
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	97.45
3ll7_A	410	Putative methyltransferase; methytransferase, stru	97.35
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	97.34
3cvo_A	202	Methyltransferase-like protein of unknown functio;	97.33
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	97.28
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	97.21
3ufb_A	530	Type I restriction-modification system methyltran	97.21
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	96.85
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	96.66
2zig_A	297	TTHA0409, putative modification methylase; methylt	95.58
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	94.76
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	94.39
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	94.22
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	94.13
3tos_A	257	CALS11; methyltransferase, calicheamicin, structur	94.07
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	93.97
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	93.81
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	93.73
2zig_A	297	TTHA0409, putative modification methylase; methylt	93.59
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	92.61
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	92.33
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	91.78
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	91.67
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	91.55
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	91.4
2oo3_A	283	Protein involved in catabolism of external DNA; st	90.05
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	89.75
3me5_A	482	Cytosine-specific methyltransferase; structural ge	88.33
3iht_A	174	S-adenosyl-L-methionine methyl transferase; YP_165	88.2
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	87.93
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	87.92
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	87.37
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	87.1
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	87.09
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	86.33
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	86.13
2uyo_A	310	Hypothetical protein ML2640; putative methyltransf	84.04
3gms_A	340	Putative NADPH:quinone reductase; structural genom	83.23
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	83.08
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	81.34
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	81.27
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	81.25
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	81.19
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	80.95
3iei_A	334	Leucine carboxyl methyltransferase 1; LCMT-1, S-ad	80.29

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=99.97  E-value=5.5e-31  Score=226.20  Aligned_cols=214  Identities=51%  Similarity=0.880  Sum_probs=188.6

Q ss_pred             HHccccccccceeccccccCCcHHHHHHHhcChhhHHHHHHhHHhhhccCCCcHHHHHHHHhhccCCCCEEEEEcCcccH
Q 022592           75 MRARLSGGHFRMLNEKLYTCTGKEALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIVKWLKDHSPSLVIADFGCGDAR  154 (294)
Q Consensus        75 m~~~l~~~~fr~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~VLDiGcG~G~  154 (294)
                      |+..+.+..|+++++..+........++|...+..|+.+...|......|+...+..++..+....++.+|||||||+|.
T Consensus         1 m~~~~~~~~fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vLDiG~G~G~   80 (215)
T 2zfu_A            1 MAQRLDGARFRYLNEQLYSGPSSAAQRLFQEDPEAFLLYHRGFQSQVKKWPLQPVDRIARDLRQRPASLVVADFGCGDCR   80 (215)
T ss_dssp             -CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHCHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHTSCTTSCEEEETCTTCH
T ss_pred             ChhHHHHHHHHHhcccccchHHHHHHHHHHHhHHHHHHHHHHHHhhhcccchhHHHHHHHHHhccCCCCeEEEECCcCCH
Confidence            34456778899999999998888888999999999999999998888899998888888888765566799999999999


Q ss_pred             HHHHhccceEEEeccCCCCcEEEccCCCCCCCCCCccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCC
Q 022592          155 LAKSVKNKVFSFDLVSNDPSVIACDMSNTPLNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNT  234 (294)
Q Consensus       155 ~~~~l~~~v~gvD~s~~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~  234 (294)
                      ++..++..++|+|+|+.++.++.+|+..+|+++++||+|++..++|+.++..++.++.++|+|||.+++.++...+.   
T Consensus        81 ~~~~l~~~v~~~D~s~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~---  157 (215)
T 2zfu_A           81 LASSIRNPVHCFDLASLDPRVTVCDMAQVPLEDESVDVAVFCLSLMGTNIRDFLEEANRVLKPGGLLKVAEVSSRFE---  157 (215)
T ss_dssp             HHHHCCSCEEEEESSCSSTTEEESCTTSCSCCTTCEEEEEEESCCCSSCHHHHHHHHHHHEEEEEEEEEEECGGGCS---
T ss_pred             HHHHhhccEEEEeCCCCCceEEEeccccCCCCCCCEeEEEEehhccccCHHHHHHHHHHhCCCCeEEEEEEcCCCCC---
Confidence            99999889999999999999999999999998899999999999988899999999999999999999998765442   


Q ss_pred             CCCCHHHHHHHHHHCCCeEEEEeccCCeEEEEEEEECCccccc-cccCCCCcccccccccC
Q 022592          235 GGADPNKFSKAVCDLGFAPVSKDFSNKMFIMFYFKKKEKQNSK-SKEIQWPELKPCLYKRR  294 (294)
Q Consensus       235 ~~~~~~~~~~~l~~~Gf~~~~~~~~~~~f~~i~~~k~~~~~~~-~~~~~~~~~~~~~~~~~  294 (294)
                         +.+++..+++++||+++........+++++++|....+.. .+.+.|..|+||+||||
T Consensus       158 ---~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~l~~~~~~k~  215 (215)
T 2zfu_A          158 ---DVRTFLRAVTKLGFKIVSKDLTNSHFFLFDFQKTGPPLVGPKAQLSGLQLQPCLYKRR  215 (215)
T ss_dssp             ---CHHHHHHHHHHTTEEEEEEECCSTTCEEEEEEECSSCSSCTTCCCGGGCCCCCCCCC-
T ss_pred             ---CHHHHHHHHHHCCCEEEEEecCCCeEEEEEEEecCccccchhhhcccccccchhcccC
Confidence               7799999999999999998888889999999998654441 35566889999999998

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.81  E-value=1.5e-19  Score=154.76  Aligned_cols=142  Identities=18%  Similarity=0.227  Sum_probs=117.6

Q ss_pred             HHHHHHhhccCCCCEEEEEcCcccHHHHHhc------cceEEEeccC---------------CCCcEEEccCCCCCCCCC
Q 022592          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS---------------NDPSVIACDMSNTPLNSS  188 (294)
Q Consensus       130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~---------------~~~~~~~~d~~~lp~~~~  188 (294)
                      ..++..+... ++.+|||||||+|.++..++      ..|+|+|+|+               .++.++.+|+..++++++
T Consensus        27 ~~~~~~~~~~-~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~  105 (219)
T 3dh0_A           27 EKVLKEFGLK-EGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPDN  105 (219)
T ss_dssp             HHHHHHHTCC-TTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCSS
T ss_pred             HHHHHHhCCC-CCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCCC
Confidence            4566666544 66799999999999888775      3799999987               368899999999999899


Q ss_pred             CccEEEEcccccCC-CHHHHHHHHHHhcCcCcEEEEEeecCCCCCC----CCCCCHHHHHHHHHHCCCeEEEEeccCCeE
Q 022592          189 SVDVAVFCLSLMGI-NFPNYLQEAQRVLKPSGWLLIAEVKSRFDPN----TGGADPNKFSKAVCDLGFAPVSKDFSNKMF  263 (294)
Q Consensus       189 ~fD~Vi~~~~l~~~-~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~----~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~f  263 (294)
                      +||+|+++.+++|. ++..+++++.++|+|||.+++.++.......    ...++.+++..+++++||+++........+
T Consensus       106 ~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~  185 (219)
T 3dh0_A          106 TVDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGRVVEVGKYC  185 (219)
T ss_dssp             CEEEEEEESCGGGCSSHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHTTCEEEEEEEETTTE
T ss_pred             CeeEEEeehhhhhcCCHHHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHHHCCCEEEEEEeeCCce
Confidence            99999999999995 8899999999999999999999876543221    223789999999999999999877666777


Q ss_pred             EEEEEEECC
Q 022592          264 IMFYFKKKE  272 (294)
Q Consensus       264 ~~i~~~k~~  272 (294)
                      ++++++|..
T Consensus       186 ~~~~~~k~~  194 (219)
T 3dh0_A          186 FGVYAMIVK  194 (219)
T ss_dssp             EEEEEECC-
T ss_pred             EEEEEEecc
Confidence            788888864

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.80  E-value=1.3e-18  Score=148.41  Aligned_cols=138  Identities=10%  Similarity=0.165  Sum_probs=110.3

Q ss_pred             HHHHHHHHhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccC-----------CCCcEEEccCCCCCCCCCCccEE
Q 022592          128 PVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS-----------NDPSVIACDMSNTPLNSSSVDVA  193 (294)
Q Consensus       128 ~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~-----------~~~~~~~~d~~~lp~~~~~fD~V  193 (294)
                      ....++..+....++.+|||||||+|.++..++   ..|+|+|+|+           .++.++.+|+.++ +++++||+|
T Consensus        33 ~~~~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~-~~~~~~D~v  111 (218)
T 3ou2_A           33 AAPAALERLRAGNIRGDVLELASGTGYWTRHLSGLADRVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDW-TPDRQWDAV  111 (218)
T ss_dssp             THHHHHHHHTTTTSCSEEEEESCTTSHHHHHHHHHSSEEEEEESCHHHHHHHGGGCCTTEEEEECCTTSC-CCSSCEEEE
T ss_pred             HHHHHHHHHhcCCCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHhcCCCCeEEEecccccC-CCCCceeEE
Confidence            346677777755567799999999999998887   4899999987           4688999999888 778899999


Q ss_pred             EEcccccCCCH---HHHHHHHHHhcCcCcEEEEEeecCCCC------------------CC-------CCCCCHHHHHHH
Q 022592          194 VFCLSLMGINF---PNYLQEAQRVLKPSGWLLIAEVKSRFD------------------PN-------TGGADPNKFSKA  245 (294)
Q Consensus       194 i~~~~l~~~~~---~~~l~el~r~LkpgG~l~i~e~~~~~~------------------~~-------~~~~~~~~~~~~  245 (294)
                      ++..+++|.+.   ..+++++.++|+|||.+++.++.....                  +.       ...++.+++..+
T Consensus       112 ~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (218)
T 3ou2_A          112 FFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDSEPEVAVRRTLQDGRSFRIVKVFRSPAELTER  191 (218)
T ss_dssp             EEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCCC------------CEEEEECTTSCEEEEECCCCCHHHHHHH
T ss_pred             EEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCccccchhhhcccccceeeecCCcchhhHhhcCCCHHHHHHH
Confidence            99999999643   799999999999999999987643110                  00       112588999999


Q ss_pred             HHHCCCeEEEEeccCCeEEEE
Q 022592          246 VCDLGFAPVSKDFSNKMFIMF  266 (294)
Q Consensus       246 l~~~Gf~~~~~~~~~~~f~~i  266 (294)
                      ++++||++........+++.+
T Consensus       192 l~~aGf~v~~~~~~~~~~~~~  212 (218)
T 3ou2_A          192 LTALGWSCSVDEVHPGFLYAT  212 (218)
T ss_dssp             HHHTTEEEEEEEEETTEEEEE
T ss_pred             HHHCCCEEEeeeccccceEee
Confidence            999999987776666555544

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.79  E-value=4.5e-19  Score=157.33  Aligned_cols=131  Identities=21%  Similarity=0.233  Sum_probs=106.7

Q ss_pred             CCCCEEEEEcCcccHHHHHhcc-------ceEEEeccC----------------CCCcEEEccCCCCCCCCCCccEEEEc
Q 022592          140 SPSLVIADFGCGDARLAKSVKN-------KVFSFDLVS----------------NDPSVIACDMSNTPLNSSSVDVAVFC  196 (294)
Q Consensus       140 ~~~~~VLDiGcG~G~~~~~l~~-------~v~gvD~s~----------------~~~~~~~~d~~~lp~~~~~fD~Vi~~  196 (294)
                      .++.+|||||||+|.++..++.       +|+|+|+|+                .++.++++|+.++|++  .||+|+++
T Consensus        69 ~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~--~~d~v~~~  146 (261)
T 4gek_A           69 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLN  146 (261)
T ss_dssp             CTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCC--SEEEEEEE
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeeccccccccc--ccccceee
Confidence            4778999999999998887752       699999997                2678999999998874  59999999


Q ss_pred             ccccCCC---HHHHHHHHHHhcCcCcEEEEEeecCCCC---------------------CC------------CCCCCHH
Q 022592          197 LSLMGIN---FPNYLQEAQRVLKPSGWLLIAEVKSRFD---------------------PN------------TGGADPN  240 (294)
Q Consensus       197 ~~l~~~~---~~~~l~el~r~LkpgG~l~i~e~~~~~~---------------------~~------------~~~~~~~  240 (294)
                      .+|+|.+   +..++++++++|+|||.|++.+......                     ..            ...++.+
T Consensus       147 ~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~l~~~~~~~s~~  226 (261)
T 4gek_A          147 FTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVE  226 (261)
T ss_dssp             SCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCSSHHHHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCBCHH
T ss_pred             eeeeecCchhHhHHHHHHHHHcCCCcEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcccccCCCHH
Confidence            9999963   4578999999999999999987543110                     00            1125788


Q ss_pred             HHHHHHHHCCCeEEEEeccCCeEEEEEEEECC
Q 022592          241 KFSKAVCDLGFAPVSKDFSNKMFIMFYFKKKE  272 (294)
Q Consensus       241 ~~~~~l~~~Gf~~~~~~~~~~~f~~i~~~k~~  272 (294)
                      ++..+|+++||+.+++.+....|..++++|.+
T Consensus       227 ~~~~~L~~AGF~~ve~~fq~~nF~~~iA~K~~  258 (261)
T 4gek_A          227 THKARLHKAGFEHSELWFQCFNFGSLVALKAE  258 (261)
T ss_dssp             HHHHHHHHHTCSEEEEEEEETTEEEEEEECCT
T ss_pred             HHHHHHHHcCCCeEEEEEEeccEEEEEEEEcC
Confidence            89999999999999987777788889998875

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.79  E-value=9.2e-19  Score=154.13  Aligned_cols=145  Identities=18%  Similarity=0.238  Sum_probs=110.1

Q ss_pred             HHHhHHhhhccCCCcHHHHHHHHhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccC---------------CCCc
Q 022592          113 YHSGYQEQMSHWPELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS---------------NDPS  174 (294)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~---------------~~~~  174 (294)
                      -+.+|.....+.+...+..+++.+... ++.+|||||||+|.++..++   ..|+|+|+|+               .++.
T Consensus        10 ~~~~~~~s~~~~~~~~~~~l~~~l~~~-~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~   88 (260)
T 1vl5_A           10 HHHMYVTSQIHAKGSDLAKLMQIAALK-GNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVE   88 (260)
T ss_dssp             -------------CCCHHHHHHHHTCC-SCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCCSEE
T ss_pred             cceeeecCccccCHHHHHHHHHHhCCC-CCCEEEEEeCCCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCceE
Confidence            345666666666677778888888765 67799999999999998887   4899999987               3578


Q ss_pred             EEEccCCCCCCCCCCccEEEEcccccCC-CHHHHHHHHHHhcCcCcEEEEEeecCCC----------------CCCCCCC
Q 022592          175 VIACDMSNTPLNSSSVDVAVFCLSLMGI-NFPNYLQEAQRVLKPSGWLLIAEVKSRF----------------DPNTGGA  237 (294)
Q Consensus       175 ~~~~d~~~lp~~~~~fD~Vi~~~~l~~~-~~~~~l~el~r~LkpgG~l~i~e~~~~~----------------~~~~~~~  237 (294)
                      ++.+|+..+|+++++||+|++..+++|. ++..++.++.++|+|||.|++.+.....                ......+
T Consensus        89 ~~~~d~~~l~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (260)
T 1vl5_A           89 YVQGDAEQMPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAW  168 (260)
T ss_dssp             EEECCC-CCCSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHHHHHHHHCTTCCCCC
T ss_pred             EEEecHHhCCCCCCCEEEEEEhhhhHhcCCHHHHHHHHHHHcCCCCEEEEEEcCCCCCHHHHHHHHHHHHhcCccccCCC
Confidence            9999999999999999999999999995 8999999999999999999998643311                1123447


Q ss_pred             CHHHHHHHHHHCCCeEEEEec
Q 022592          238 DPNKFSKAVCDLGFAPVSKDF  258 (294)
Q Consensus       238 ~~~~~~~~l~~~Gf~~~~~~~  258 (294)
                      +..++..+|+++||.++....
T Consensus       169 ~~~~~~~~l~~aGf~~~~~~~  189 (260)
T 1vl5_A          169 KKSDWLKMLEEAGFELEELHC  189 (260)
T ss_dssp             BHHHHHHHHHHHTCEEEEEEE
T ss_pred             CHHHHHHHHHHCCCeEEEEEE
Confidence            889999999999999887544

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.79  E-value=1.8e-18  Score=150.11  Aligned_cols=117  Identities=26%  Similarity=0.300  Sum_probs=99.9

Q ss_pred             CCCEEEEEcCcccHHHHHhc---cceEEEeccC------------CCCcEEEccCCCCCCCCCCccEEEEcccccCC-CH
Q 022592          141 PSLVIADFGCGDARLAKSVK---NKVFSFDLVS------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGI-NF  204 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~-~~  204 (294)
                      ++.+|||||||+|.++..++   ..|+|+|+++            .++.++.+|+..+++++++||+|++..+++|. ++
T Consensus        53 ~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~  132 (242)
T 3l8d_A           53 KEAEVLDVGCGDGYGTYKLSRTGYKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEWTEEP  132 (242)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTTSSSCH
T ss_pred             CCCeEEEEcCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChHhhccCH
Confidence            56799999999999998887   3799999987            36789999999999989999999999999995 88


Q ss_pred             HHHHHHHHHhcCcCcEEEEEeecCCCC-------------CCCCCCCHHHHHHHHHHCCCeEEEEe
Q 022592          205 PNYLQEAQRVLKPSGWLLIAEVKSRFD-------------PNTGGADPNKFSKAVCDLGFAPVSKD  257 (294)
Q Consensus       205 ~~~l~el~r~LkpgG~l~i~e~~~~~~-------------~~~~~~~~~~~~~~l~~~Gf~~~~~~  257 (294)
                      ..++.++.++|+|||.+++.+......             .....++..++..+++++||+++...
T Consensus       133 ~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~  198 (242)
T 3l8d_A          133 LRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQGFKVVDGI  198 (242)
T ss_dssp             HHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGGGGGGTCCCSSCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred             HHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhhhhhccccccccCCCHHHHHHHHHHcCCEEEEee
Confidence            999999999999999999987543211             11233788999999999999998844

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.79  E-value=1.4e-18  Score=150.41  Aligned_cols=143  Identities=19%  Similarity=0.201  Sum_probs=113.8

Q ss_pred             HHHHHHhhccCCCCEEEEEcCcccHHHHHhc-----cceEEEeccC-------------CCCcEEEccCCCCCCCCCCcc
Q 022592          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS-------------NDPSVIACDMSNTPLNSSSVD  191 (294)
Q Consensus       130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~-------------~~~~~~~~d~~~lp~~~~~fD  191 (294)
                      ..++..+....++.+|||||||+|.++..++     ..++|+|+|+             .++.++.+|+..++++ ++||
T Consensus        33 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~-~~fD  111 (234)
T 3dtn_A           33 GVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFE-EKYD  111 (234)
T ss_dssp             HHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCC-SCEE
T ss_pred             HHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCC-CCce
Confidence            4455555544466899999999999988776     3799999987             2678999999999887 8999


Q ss_pred             EEEEcccccCCCHH---HHHHHHHHhcCcCcEEEEEeecCCCC--------------------------------CCCCC
Q 022592          192 VAVFCLSLMGINFP---NYLQEAQRVLKPSGWLLIAEVKSRFD--------------------------------PNTGG  236 (294)
Q Consensus       192 ~Vi~~~~l~~~~~~---~~l~el~r~LkpgG~l~i~e~~~~~~--------------------------------~~~~~  236 (294)
                      +|++..+++|.+..   .+++++.++|+|||.+++.+......                                .....
T Consensus       112 ~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (234)
T 3dtn_A          112 MVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGETAFIENLNKTIWRQYVENSGLTEEEIAAGYERSKLDKD  191 (234)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHHHTSSCCHHHHHTTC----CCCC
T ss_pred             EEEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCChhhhhHHHHHHHHHHHhcCCCHHHHHHHHHhcccccc
Confidence            99999999997433   59999999999999999987432110                                11223


Q ss_pred             CCHHHHHHHHHHCCCeEEEEeccCCeEEEEEEEECCc
Q 022592          237 ADPNKFSKAVCDLGFAPVSKDFSNKMFIMFYFKKKEK  273 (294)
Q Consensus       237 ~~~~~~~~~l~~~Gf~~~~~~~~~~~f~~i~~~k~~~  273 (294)
                      ++.+++..+|+++||+++...+....|.++...+...
T Consensus       192 ~~~~~~~~ll~~aGF~~v~~~~~~~~~~~~~~~~~~~  228 (234)
T 3dtn_A          192 IEMNQQLNWLKEAGFRDVSCIYKYYQFAVMFGRKTEG  228 (234)
T ss_dssp             CBHHHHHHHHHHTTCEEEEEEEEETTEEEEEEECC--
T ss_pred             cCHHHHHHHHHHcCCCceeeeeeecceeEEEEEeccc
Confidence            6889999999999999999888888898888877653

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.78  E-value=2.6e-18  Score=147.13  Aligned_cols=141  Identities=12%  Similarity=0.137  Sum_probs=110.5

Q ss_pred             HHHHHHHhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccC----------C-CCcEEEccCCCCCCCCCCccEEE
Q 022592          129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS----------N-DPSVIACDMSNTPLNSSSVDVAV  194 (294)
Q Consensus       129 ~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~----------~-~~~~~~~d~~~lp~~~~~fD~Vi  194 (294)
                      ...+++.+... ++.+|||||||+|.++..++   ..++|+|+++          . ++.++.+|+..++++ ++||+|+
T Consensus        34 ~~~~l~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~-~~fD~v~  111 (220)
T 3hnr_A           34 YEDILEDVVNK-SFGNVLEFGVGTGNLTNKLLLAGRTVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVP-TSIDTIV  111 (220)
T ss_dssp             HHHHHHHHHHT-CCSEEEEECCTTSHHHHHHHHTTCEEEEECSCHHHHHHHHHHSCTTCCEESCCSSSCCCC-SCCSEEE
T ss_pred             HHHHHHHhhcc-CCCeEEEeCCCCCHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCCCceEEEeCChhhcCCC-CCeEEEE
Confidence            45567776655 66799999999999998887   4899999998          2 789999999999987 8999999


Q ss_pred             EcccccCC-CHHH--HHHHHHHhcCcCcEEEEEeecCCCC----------------------CCCCCCCHHHHHHHHHHC
Q 022592          195 FCLSLMGI-NFPN--YLQEAQRVLKPSGWLLIAEVKSRFD----------------------PNTGGADPNKFSKAVCDL  249 (294)
Q Consensus       195 ~~~~l~~~-~~~~--~l~el~r~LkpgG~l~i~e~~~~~~----------------------~~~~~~~~~~~~~~l~~~  249 (294)
                      +..+++|. ++..  +++++.++|+|||.+++.+......                      .....++.+++..+|+++
T Consensus       112 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a  191 (220)
T 3hnr_A          112 STYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFENN  191 (220)
T ss_dssp             EESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHHHHHT
T ss_pred             ECcchhcCChHHHHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhcCCHHHHHHHHHHC
Confidence            99999996 4444  9999999999999999986432110                      001224789999999999


Q ss_pred             CCeEEEEeccCCeEEEEEEEECC
Q 022592          250 GFAPVSKDFSNKMFIMFYFKKKE  272 (294)
Q Consensus       250 Gf~~~~~~~~~~~f~~i~~~k~~  272 (294)
                      ||+++...... ...++...+..
T Consensus       192 Gf~v~~~~~~~-~~w~~~~~~~~  213 (220)
T 3hnr_A          192 GFHVTFTRLNH-FVWVMEATKQL  213 (220)
T ss_dssp             TEEEEEEECSS-SEEEEEEEECS
T ss_pred             CCEEEEeeccc-eEEEEeehhhh
Confidence            99998877764 44455555543

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.78  E-value=1.1e-18  Score=151.42  Aligned_cols=127  Identities=10%  Similarity=0.115  Sum_probs=104.5

Q ss_pred             HHHHHHhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccCC-----------CCcEEEccCCCCCCCCCCccEEEE
Q 022592          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVSN-----------DPSVIACDMSNTPLNSSSVDVAVF  195 (294)
Q Consensus       130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~~-----------~~~~~~~d~~~lp~~~~~fD~Vi~  195 (294)
                      ..+++.+....++.+|||||||+|.++..++   ..|+|+|+|+.           ++.++.+|+.++ +++++||+|++
T Consensus        31 ~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~-~~~~~fD~v~~  109 (250)
T 2p7i_A           31 PFMVRAFTPFFRPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLKDGITYIHSRFEDA-QLPRRYDNIVL  109 (250)
T ss_dssp             HHHHHHHGGGCCSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHSCSCEEEEESCGGGC-CCSSCEEEEEE
T ss_pred             HHHHHHHHhhcCCCcEEEECCCCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHc-CcCCcccEEEE
Confidence            4466666654466799999999999999887   38999999972           788999999887 46789999999


Q ss_pred             cccccCC-CHHHHHHHHH-HhcCcCcEEEEEeecCCC------------------------CCCCCCCCHHHHHHHHHHC
Q 022592          196 CLSLMGI-NFPNYLQEAQ-RVLKPSGWLLIAEVKSRF------------------------DPNTGGADPNKFSKAVCDL  249 (294)
Q Consensus       196 ~~~l~~~-~~~~~l~el~-r~LkpgG~l~i~e~~~~~------------------------~~~~~~~~~~~~~~~l~~~  249 (294)
                      ..+|+|. ++..+++++. ++|+|||.+++.+.....                        ......++.+++..+++++
T Consensus       110 ~~~l~~~~~~~~~l~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  189 (250)
T 2p7i_A          110 THVLEHIDDPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRA  189 (250)
T ss_dssp             ESCGGGCSSHHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHT
T ss_pred             hhHHHhhcCHHHHHHHHHHHhcCCCCEEEEEcCChHHHHHHHHHHcCccccchhcccccccccccccCCHHHHHHHHHHC
Confidence            9999995 8999999999 999999999998754321                        0112347999999999999


Q ss_pred             CCeEEEEe
Q 022592          250 GFAPVSKD  257 (294)
Q Consensus       250 Gf~~~~~~  257 (294)
                      ||+++...
T Consensus       190 Gf~~~~~~  197 (250)
T 2p7i_A          190 GLQVTYRS  197 (250)
T ss_dssp             TCEEEEEE
T ss_pred             CCeEEEEe
Confidence            99998854

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.78  E-value=1.6e-18  Score=146.76  Aligned_cols=154  Identities=12%  Similarity=0.120  Sum_probs=114.8

Q ss_pred             HHHHHhcChhhHHHHHHhHHhhhccCCCcHHHHHHHHhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccC-----
Q 022592           99 ALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS-----  170 (294)
Q Consensus        99 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~-----  170 (294)
                      ..++|+..+..|+........     .......++..+... .+.+|||||||+|.++..++   ..|+|+|+|+     
T Consensus         5 ~~~~y~~~a~~y~~~~~~~~~-----~~~~~~~~l~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~   78 (203)
T 3h2b_A            5 VSKAYSSPTFDAEALLGTVIS-----AEDPDRVLIEPWATG-VDGVILDVGSGTGRWTGHLASLGHQIEGLEPATRLVEL   78 (203)
T ss_dssp             HHHHHHCTTTCHHHHTCSSCC-----TTCTTHHHHHHHHHH-CCSCEEEETCTTCHHHHHHHHTTCCEEEECCCHHHHHH
T ss_pred             HHHHHhhHHHHHHHHhhhhcc-----ccHHHHHHHHHHhcc-CCCeEEEecCCCCHHHHHHHhcCCeEEEEeCCHHHHHH
Confidence            445677666666554321110     011122233333333 26799999999999998887   3899999997     


Q ss_pred             -----CCCcEEEccCCCCCCCCCCccEEEEcccccCC---CHHHHHHHHHHhcCcCcEEEEEeecCCCCC-------CCC
Q 022592          171 -----NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGI---NFPNYLQEAQRVLKPSGWLLIAEVKSRFDP-------NTG  235 (294)
Q Consensus       171 -----~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~---~~~~~l~el~r~LkpgG~l~i~e~~~~~~~-------~~~  235 (294)
                           .++.++.+|+..+++++++||+|++..+++|.   ++..+++++.++|+|||.+++..+......       ...
T Consensus        79 a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~  158 (203)
T 3h2b_A           79 ARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAY  158 (203)
T ss_dssp             HHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCTTTHHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEE
T ss_pred             HHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhc
Confidence                 47899999999999888999999999999995   789999999999999999999876543211       111


Q ss_pred             CCCHHHHHHHHHHCCCeEEEEec
Q 022592          236 GADPNKFSKAVCDLGFAPVSKDF  258 (294)
Q Consensus       236 ~~~~~~~~~~l~~~Gf~~~~~~~  258 (294)
                      .++.+++..+|+++||+++....
T Consensus       159 ~~~~~~~~~~l~~~Gf~~~~~~~  181 (203)
T 3h2b_A          159 RWPLPELAQALETAGFQVTSSHW  181 (203)
T ss_dssp             ECCHHHHHHHHHHTTEEEEEEEE
T ss_pred             cCCHHHHHHHHHHCCCcEEEEEe
Confidence            26899999999999999998554

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.77  E-value=1.7e-17  Score=142.61  Aligned_cols=147  Identities=19%  Similarity=0.202  Sum_probs=111.7

Q ss_pred             HHhcChhhHHHHHHhHHhhhccCCCcHHHHHHHHhhccCCCCEEEEEcCcccHHHHHhccceEEEeccC--------CCC
Q 022592          102 YFNENPALFDMYHSGYQEQMSHWPELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVKNKVFSFDLVS--------NDP  173 (294)
Q Consensus       102 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~~~v~gvD~s~--------~~~  173 (294)
                      .|+...+.|+.+........        ...+..+....++.+|||||||+|.++..++.. +|+|+|+        .++
T Consensus        16 ~~~~~~~~y~~~~~~~~~~~--------~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~-~~vD~s~~~~~~a~~~~~   86 (219)
T 1vlm_A           16 IFERFVNEYERWFLVHRFAY--------LSELQAVKCLLPEGRGVEIGVGTGRFAVPLKIK-IGVEPSERMAEIARKRGV   86 (219)
T ss_dssp             HHHHTHHHHHHHHHHTHHHH--------HHHHHHHHHHCCSSCEEEETCTTSTTHHHHTCC-EEEESCHHHHHHHHHTTC
T ss_pred             ecchhHHHHHHHHHhcchhH--------HHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHH-hccCCCHHHHHHHHhcCC
Confidence            55566666666543321111        122223333334679999999999999998876 9999997        368


Q ss_pred             cEEEccCCCCCCCCCCccEEEEcccccCC-CHHHHHHHHHHhcCcCcEEEEEeecCCC---------------CCCCCCC
Q 022592          174 SVIACDMSNTPLNSSSVDVAVFCLSLMGI-NFPNYLQEAQRVLKPSGWLLIAEVKSRF---------------DPNTGGA  237 (294)
Q Consensus       174 ~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~-~~~~~l~el~r~LkpgG~l~i~e~~~~~---------------~~~~~~~  237 (294)
                      .++.+|+..+++++++||+|++..+++|. ++..++.++.++|+|||.+++.+.....               ......+
T Consensus        87 ~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (219)
T 1vlm_A           87 FVLKGTAENLPLKDESFDFALMVTTICFVDDPERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFF  166 (219)
T ss_dssp             EEEECBTTBCCSCTTCEEEEEEESCGGGSSCHHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCC
T ss_pred             EEEEcccccCCCCCCCeeEEEEcchHhhccCHHHHHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHHhcCcchhcccccC
Confidence            89999999999888899999999999995 8999999999999999999998654321               1122347


Q ss_pred             CHHHHHHHHHHCCCeEEEEe
Q 022592          238 DPNKFSKAVCDLGFAPVSKD  257 (294)
Q Consensus       238 ~~~~~~~~l~~~Gf~~~~~~  257 (294)
                      +.+++..+|+++||+++...
T Consensus       167 ~~~~l~~~l~~~Gf~~~~~~  186 (219)
T 1vlm_A          167 STEELMDLMRKAGFEEFKVV  186 (219)
T ss_dssp             CHHHHHHHHHHTTCEEEEEE
T ss_pred             CHHHHHHHHHHCCCeEEEEe
Confidence            99999999999999998743

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.76  E-value=1.2e-18  Score=154.35  Aligned_cols=87  Identities=20%  Similarity=0.282  Sum_probs=79.6

Q ss_pred             CCCEEEEEcCcccHHHHHhc---cceEEEeccC---------CCCcEEEccCCCCCCCCCCccEEEEcccccCCCHHHHH
Q 022592          141 PSLVIADFGCGDARLAKSVK---NKVFSFDLVS---------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGINFPNYL  208 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~---------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~~~~~~l  208 (294)
                      ...+|||||||+|.++..|+   .+|+|+|+|+         .++.++++|++++|+++++||+|++..++||.++..++
T Consensus        39 ~~~~vLDvGcGtG~~~~~l~~~~~~v~gvD~s~~ml~~a~~~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h~~~~~~~~  118 (257)
T 4hg2_A           39 ARGDALDCGCGSGQASLGLAEFFERVHAVDPGEAQIRQALRHPRVTYAVAPAEDTGLPPASVDVAIAAQAMHWFDLDRFW  118 (257)
T ss_dssp             CSSEEEEESCTTTTTHHHHHTTCSEEEEEESCHHHHHTCCCCTTEEEEECCTTCCCCCSSCEEEEEECSCCTTCCHHHHH
T ss_pred             CCCCEEEEcCCCCHHHHHHHHhCCEEEEEeCcHHhhhhhhhcCCceeehhhhhhhcccCCcccEEEEeeehhHhhHHHHH
Confidence            44689999999999999887   4899999997         47889999999999999999999999999999999999


Q ss_pred             HHHHHhcCcCcEEEEEeec
Q 022592          209 QEAQRVLKPSGWLLIAEVK  227 (294)
Q Consensus       209 ~el~r~LkpgG~l~i~e~~  227 (294)
                      .++.|+|||||.|++....
T Consensus       119 ~e~~rvLkpgG~l~~~~~~  137 (257)
T 4hg2_A          119 AELRRVARPGAVFAAVTYG  137 (257)
T ss_dssp             HHHHHHEEEEEEEEEEEEC
T ss_pred             HHHHHHcCCCCEEEEEECC
Confidence            9999999999999987643

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.76  E-value=6.4e-18  Score=139.06  Aligned_cols=136  Identities=18%  Similarity=0.281  Sum_probs=112.3

Q ss_pred             HHHHhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccC----------CCCcEEEccCCCCCCCCCCccEEEEccc
Q 022592          132 IVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS----------NDPSVIACDMSNTPLNSSSVDVAVFCLS  198 (294)
Q Consensus       132 ~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~----------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~  198 (294)
                      +++.+... ++.+|||||||+|.++..++   ..++|+|+++          .++.+..+|   .++++++||+|++..+
T Consensus         9 ~~~~~~~~-~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~v~~~~~d---~~~~~~~~D~v~~~~~   84 (170)
T 3i9f_A            9 YLPNIFEG-KKGVIVDYGCGNGFYCKYLLEFATKLYCIDINVIALKEVKEKFDSVITLSDP---KEIPDNSVDFILFANS   84 (170)
T ss_dssp             THHHHHSS-CCEEEEEETCTTCTTHHHHHTTEEEEEEECSCHHHHHHHHHHCTTSEEESSG---GGSCTTCEEEEEEESC
T ss_pred             HHHhcCcC-CCCeEEEECCCCCHHHHHHHhhcCeEEEEeCCHHHHHHHHHhCCCcEEEeCC---CCCCCCceEEEEEccc
Confidence            44555443 56799999999999998887   3799999987          478888888   6778899999999999


Q ss_pred             ccCC-CHHHHHHHHHHhcCcCcEEEEEeecCCCCCC----CCCCCHHHHHHHHHHCCCeEEEEeccCCeEEEEEEEECCc
Q 022592          199 LMGI-NFPNYLQEAQRVLKPSGWLLIAEVKSRFDPN----TGGADPNKFSKAVCDLGFAPVSKDFSNKMFIMFYFKKKEK  273 (294)
Q Consensus       199 l~~~-~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~----~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~f~~i~~~k~~~  273 (294)
                      ++|. ++..+++++.++|+|||.+++.++.......    ...++.+++..+++  ||+++........++.+++++...
T Consensus        85 l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--Gf~~~~~~~~~~~~~~l~~~~~~~  162 (170)
T 3i9f_A           85 FHDMDDKQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFS--NFVVEKRFNPTPYHFGLVLKRKTS  162 (170)
T ss_dssp             STTCSCHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTT--TEEEEEEECSSTTEEEEEEEECCC
T ss_pred             hhcccCHHHHHHHHHHhcCCCCEEEEEEcCccccccCchHhhhcCHHHHHHHHh--CcEEEEccCCCCceEEEEEecCCC
Confidence            9995 8999999999999999999999876543222    23378999999999  999999888777888888888753

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.76  E-value=8.6e-19  Score=149.30  Aligned_cols=137  Identities=16%  Similarity=0.239  Sum_probs=106.6

Q ss_pred             HHHHHHhhccCCCCEEEEEcCcccHHHHHhc----cceEEEeccC----------------CCCcEEEccCCCCCCCCCC
Q 022592          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSS  189 (294)
Q Consensus       130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~----------------~~~~~~~~d~~~lp~~~~~  189 (294)
                      ..+++.+... ++ +|||||||+|.++..++    ..++|+|+|+                .++.++.+|+..+++++++
T Consensus        34 ~~~~~~~~~~-~~-~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  111 (219)
T 3dlc_A           34 ENIINRFGIT-AG-TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDNY  111 (219)
T ss_dssp             HHHHHHHCCC-EE-EEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCTTC
T ss_pred             HHHHHhcCCC-CC-EEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCccc
Confidence            3444544432 34 99999999999988886    3899999986                2678999999999999999


Q ss_pred             ccEEEEcccccCC-CHHHHHHHHHHhcCcCcEEEEEeecCCC-----------------C----CCCCCCCHHHHHHHHH
Q 022592          190 VDVAVFCLSLMGI-NFPNYLQEAQRVLKPSGWLLIAEVKSRF-----------------D----PNTGGADPNKFSKAVC  247 (294)
Q Consensus       190 fD~Vi~~~~l~~~-~~~~~l~el~r~LkpgG~l~i~e~~~~~-----------------~----~~~~~~~~~~~~~~l~  247 (294)
                      ||+|++..+++|. ++..+++++.++|+|||.+++.+.....                 .    .....++.+++..+|+
T Consensus       112 ~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  191 (219)
T 3dlc_A          112 ADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNRKNISQENVERFQNVLD  191 (219)
T ss_dssp             EEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEECCSSHHHHHHHHHHHHHHCTTHHHHHHHHSSHHHHHHHHHHHH
T ss_pred             ccEEEECchHhhccCHHHHHHHHHHhCCCCCEEEEEeccCcHHHHHHHHHHHHHhHHHHHhhhhhccccCCHHHHHHHHH
Confidence            9999999999995 8999999999999999999998532210                 0    1112246789999999


Q ss_pred             HCCCeEEEEeccCCeEEEEEE
Q 022592          248 DLGFAPVSKDFSNKMFIMFYF  268 (294)
Q Consensus       248 ~~Gf~~~~~~~~~~~f~~i~~  268 (294)
                      ++||+++........+.+++.
T Consensus       192 ~aGf~~v~~~~~~~~~~~~~~  212 (219)
T 3dlc_A          192 EIGISSYEIILGDEGFWIIIS  212 (219)
T ss_dssp             HHTCSSEEEEEETTEEEEEEB
T ss_pred             HcCCCeEEEEecCCceEEEEe
Confidence            999999887665555554443

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.75  E-value=5.1e-18  Score=149.60  Aligned_cols=143  Identities=14%  Similarity=0.177  Sum_probs=110.8

Q ss_pred             HHHHhhcc-CCCCEEEEEcCcccHHHHHhc---cceEEEeccC----------CCCcEEEccCCCCCCCCCCccEEEEcc
Q 022592          132 IVKWLKDH-SPSLVIADFGCGDARLAKSVK---NKVFSFDLVS----------NDPSVIACDMSNTPLNSSSVDVAVFCL  197 (294)
Q Consensus       132 ~~~~l~~~-~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~----------~~~~~~~~d~~~lp~~~~~fD~Vi~~~  197 (294)
                      +++.+... +++.+|||||||+|.++..++   ..|+|+|+|+          .++.++.+|+..+++ +++||+|++..
T Consensus        40 ~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~  118 (263)
T 3pfg_A           40 LAALVRRHSPKAASLLDVACGTGMHLRHLADSFGTVEGLELSADMLAIARRRNPDAVLHHGDMRDFSL-GRRFSAVTCMF  118 (263)
T ss_dssp             HHHHHHHHCTTCCEEEEETCTTSHHHHHHTTTSSEEEEEESCHHHHHHHHHHCTTSEEEECCTTTCCC-SCCEEEEEECT
T ss_pred             HHHHHHhhCCCCCcEEEeCCcCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCCCCEEEECChHHCCc-cCCcCEEEEcC
Confidence            34444332 345799999999999999887   3799999997          478999999999888 78899999998


Q ss_pred             -cccCC----CHHHHHHHHHHhcCcCcEEEEEeecCC--CC---------------------------------------
Q 022592          198 -SLMGI----NFPNYLQEAQRVLKPSGWLLIAEVKSR--FD---------------------------------------  231 (294)
Q Consensus       198 -~l~~~----~~~~~l~el~r~LkpgG~l~i~e~~~~--~~---------------------------------------  231 (294)
                       +++|.    +...+++++.++|+|||.|++..+...  +.                                       
T Consensus       119 ~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (263)
T 3pfg_A          119 SSIGHLAGQAELDAALERFAAHVLPDGVVVVEPWWFPENFTPGYVAAGTVEAGGTTVTRVSHSSREGEATRIEVHYLVAG  198 (263)
T ss_dssp             TGGGGSCHHHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             chhhhcCCHHHHHHHHHHHHHhcCCCcEEEEEeccChhhccccccccceeccCCceeEEEEEEEecCcEEEEEEEEEEec
Confidence             99986    456889999999999999999531100  00                                       


Q ss_pred             CC-----------CCCCCHHHHHHHHHHCCCeEEEEeccCCeEEEEEEEECCccc
Q 022592          232 PN-----------TGGADPNKFSKAVCDLGFAPVSKDFSNKMFIMFYFKKKEKQN  275 (294)
Q Consensus       232 ~~-----------~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~f~~i~~~k~~~~~  275 (294)
                      ..           ...++.+++..+|+++||+++.+........+++++|...+.
T Consensus       199 ~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~~~~~va~K~a~~~  253 (263)
T 3pfg_A          199 PDRGITHHEESHRITLFTREQYERAFTAAGLSVEFMPGGPSGRGLFTGLPGAKGE  253 (263)
T ss_dssp             TTTEEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEECC---
T ss_pred             CCCcEEEEEEEEEEEeecHHHHHHHHHHCCCEEEEeeCCCCCceeEEEecCCCCc
Confidence            00           122689999999999999999988777777788898875433

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.75  E-value=1.6e-17  Score=144.00  Aligned_cols=128  Identities=19%  Similarity=0.258  Sum_probs=101.8

Q ss_pred             HHHHHHhhccCCCCEEEEEcCcccHHHHHhc---c-ceEEEeccC------------CCCcEEEccCCCCCCCCCCccEE
Q 022592          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK---N-KVFSFDLVS------------NDPSVIACDMSNTPLNSSSVDVA  193 (294)
Q Consensus       130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~-~v~gvD~s~------------~~~~~~~~d~~~lp~~~~~fD~V  193 (294)
                      ..+...+... ++.+|||||||+|.++..++   . .|+|+|+|+            .++.++.+|+..+++++++||+|
T Consensus        33 ~~l~~~~~~~-~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v  111 (243)
T 3bkw_A           33 PALRAMLPEV-GGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFDLA  111 (243)
T ss_dssp             HHHHHHSCCC-TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEEEE
T ss_pred             HHHHHhcccc-CCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCceEE
Confidence            3455555443 66799999999999988876   3 899999997            25788999999988888999999


Q ss_pred             EEcccccCC-CHHHHHHHHHHhcCcCcEEEEEeecCCCCC-----------------CC-------------------CC
Q 022592          194 VFCLSLMGI-NFPNYLQEAQRVLKPSGWLLIAEVKSRFDP-----------------NT-------------------GG  236 (294)
Q Consensus       194 i~~~~l~~~-~~~~~l~el~r~LkpgG~l~i~e~~~~~~~-----------------~~-------------------~~  236 (294)
                      ++..+++|. ++..+++++.++|+|||.+++......+..                 ..                   ..
T Consensus       112 ~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (243)
T 3bkw_A          112 YSSLALHYVEDVARLFRTVHQALSPGGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDWLAKGVVKHH  191 (243)
T ss_dssp             EEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECHHHHCCSSCSCEECTTSCEEEEECCTTCCEEECTTHHHHSCCEEE
T ss_pred             EEeccccccchHHHHHHHHHHhcCcCcEEEEEeCCcccccCcCcceeecCCCceEEeecccccccceeeeeccCceEEEe
Confidence            999999995 899999999999999999999764321000                 00                   01


Q ss_pred             CCHHHHHHHHHHCCCeEEEEec
Q 022592          237 ADPNKFSKAVCDLGFAPVSKDF  258 (294)
Q Consensus       237 ~~~~~~~~~l~~~Gf~~~~~~~  258 (294)
                      ++.+++..+|+++||+++....
T Consensus       192 ~t~~~~~~~l~~aGF~~~~~~~  213 (243)
T 3bkw_A          192 RTVGTTLNALIRSGFAIEHVEE  213 (243)
T ss_dssp             CCHHHHHHHHHHTTCEEEEEEE
T ss_pred             ccHHHHHHHHHHcCCEeeeecc
Confidence            4789999999999999988543

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.75  E-value=1.1e-17  Score=146.61  Aligned_cols=128  Identities=18%  Similarity=0.276  Sum_probs=104.4

Q ss_pred             HHHHHHHhhccCCCCEEEEEcCcccHHHHHhc----cceEEEeccC----------------CCCcEEEccCCCCCCCCC
Q 022592          129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS----------------NDPSVIACDMSNTPLNSS  188 (294)
Q Consensus       129 ~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~----------------~~~~~~~~d~~~lp~~~~  188 (294)
                      ...++..+....++.+|||||||+|.++..++    ..|+|+|+|+                .++.++.+|+..+|++++
T Consensus        34 ~~~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~  113 (257)
T 3f4k_A           34 TRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNE  113 (257)
T ss_dssp             HHHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTT
T ss_pred             HHHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCC
Confidence            34455555444567799999999999998886    3899999997                238899999999999899


Q ss_pred             CccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEeecCCCCC------------CCCCCCHHHHHHHHHHCCCeEEEE
Q 022592          189 SVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDP------------NTGGADPNKFSKAVCDLGFAPVSK  256 (294)
Q Consensus       189 ~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~------------~~~~~~~~~~~~~l~~~Gf~~~~~  256 (294)
                      +||+|++..+++|.++..+++++.++|+|||.+++.+.......            .....+.+++..+++++||+++..
T Consensus       114 ~fD~v~~~~~l~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~  193 (257)
T 3f4k_A          114 ELDLIWSEGAIYNIGFERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFWMDAYPEISVIPTCIDKMERAGYTPTAH  193 (257)
T ss_dssp             CEEEEEEESCSCCCCHHHHHHHHHTTEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCCBHHHHHHHHHHTTEEEEEE
T ss_pred             CEEEEEecChHhhcCHHHHHHHHHHHcCCCcEEEEEEeeccCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCeEEEE
Confidence            99999999999999999999999999999999999875311110            011257899999999999999874

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.74  E-value=1.6e-17  Score=146.88  Aligned_cols=129  Identities=21%  Similarity=0.308  Sum_probs=105.0

Q ss_pred             HHHHHHHhhccCCCCEEEEEcCcccHHHHHhc----cceEEEeccC----------------CCCcEEEccCCCCCCCCC
Q 022592          129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS----------------NDPSVIACDMSNTPLNSS  188 (294)
Q Consensus       129 ~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~----------------~~~~~~~~d~~~lp~~~~  188 (294)
                      ...++..+....++.+|||||||+|.++..++    ..|+|+|+|+                +++.++.+|+.++|++++
T Consensus        34 ~~~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~  113 (267)
T 3kkz_A           34 TLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNE  113 (267)
T ss_dssp             HHHHHTTCCCCCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTT
T ss_pred             HHHHHHhcccCCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCC
Confidence            34455555534467899999999999999887    2899999997                348899999999998889


Q ss_pred             CccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEeecCCCCCC------------CCCCCHHHHHHHHHHCCCeEEEE
Q 022592          189 SVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPN------------TGGADPNKFSKAVCDLGFAPVSK  256 (294)
Q Consensus       189 ~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~------------~~~~~~~~~~~~l~~~Gf~~~~~  256 (294)
                      +||+|++..+++|.++..+++++.++|+|||.+++.++.......            ....+..++.++++++||+++..
T Consensus       114 ~fD~i~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~  193 (267)
T 3kkz_A          114 ELDLIWSEGAIYNIGFERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFWMDAYPEIDTIPNQVAKIHKAGYLPVAT  193 (267)
T ss_dssp             CEEEEEESSCGGGTCHHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCEEHHHHHHHHHHTTEEEEEE
T ss_pred             CEEEEEEcCCceecCHHHHHHHHHHHcCCCCEEEEEEeeecCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCEEEEE
Confidence            999999999999999999999999999999999998754211100            01247889999999999999875


Q ss_pred             e
Q 022592          257 D  257 (294)
Q Consensus       257 ~  257 (294)
                      .
T Consensus       194 ~  194 (267)
T 3kkz_A          194 F  194 (267)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.74  E-value=8.4e-18  Score=146.34  Aligned_cols=127  Identities=16%  Similarity=0.245  Sum_probs=102.1

Q ss_pred             HHHHhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccC-------CCCcEEEccCCCC--CCCCCCccEEEEcccc
Q 022592          132 IVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS-------NDPSVIACDMSNT--PLNSSSVDVAVFCLSL  199 (294)
Q Consensus       132 ~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~-------~~~~~~~~d~~~l--p~~~~~fD~Vi~~~~l  199 (294)
                      +...+....++.+|||||||+|.++..++   ..|+|+|+|+       .++.++.+|+...  |+++++||+|++..++
T Consensus        32 ~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~d~~~~~~~~~~~~fD~i~~~~~l  111 (240)
T 3dli_A           32 LRRYIPYFKGCRRVLDIGCGRGEFLELCKEEGIESIGVDINEDMIKFCEGKFNVVKSDAIEYLKSLPDKYLDGVMISHFV  111 (240)
T ss_dssp             HGGGGGGTTTCSCEEEETCTTTHHHHHHHHHTCCEEEECSCHHHHHHHHTTSEEECSCHHHHHHTSCTTCBSEEEEESCG
T ss_pred             HHHHHhhhcCCCeEEEEeCCCCHHHHHHHhCCCcEEEEECCHHHHHHHHhhcceeeccHHHHhhhcCCCCeeEEEECCch
Confidence            33444444466799999999999998886   3899999998       3578888888775  7888999999999999


Q ss_pred             cCC---CHHHHHHHHHHhcCcCcEEEEEeecCCC----------CCCCCCCCHHHHHHHHHHCCCeEEEEec
Q 022592          200 MGI---NFPNYLQEAQRVLKPSGWLLIAEVKSRF----------DPNTGGADPNKFSKAVCDLGFAPVSKDF  258 (294)
Q Consensus       200 ~~~---~~~~~l~el~r~LkpgG~l~i~e~~~~~----------~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  258 (294)
                      +|.   +...+++++.++|+|||.+++.......          ......++.+++..+++++||+++....
T Consensus       112 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~  183 (240)
T 3dli_A          112 EHLDPERLFELLSLCYSKMKYSSYIVIESPNPTSLYSLINFYIDPTHKKPVHPETLKFILEYLGFRDVKIEF  183 (240)
T ss_dssp             GGSCGGGHHHHHHHHHHHBCTTCCEEEEEECTTSHHHHHHHTTSTTCCSCCCHHHHHHHHHHHTCEEEEEEE
T ss_pred             hhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcchhHHHHHHhcCccccccCCHHHHHHHHHHCCCeEEEEEE
Confidence            995   4479999999999999999998765421          1223447889999999999999887543

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.73  E-value=4.5e-18  Score=148.98  Aligned_cols=125  Identities=20%  Similarity=0.245  Sum_probs=100.5

Q ss_pred             HHHHhhccCCCCEEEEEcCcccHHHHHhc---c-ceEEEeccC------------CCCcEEEccCCCCCCCCCCccEEEE
Q 022592          132 IVKWLKDHSPSLVIADFGCGDARLAKSVK---N-KVFSFDLVS------------NDPSVIACDMSNTPLNSSSVDVAVF  195 (294)
Q Consensus       132 ~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~-~v~gvD~s~------------~~~~~~~~d~~~lp~~~~~fD~Vi~  195 (294)
                      ++..+... ++.+|||||||+|.++..++   . .|+|+|+|+            .++.++.+|+..+++++++||+|++
T Consensus        36 l~~~~~~~-~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~  114 (253)
T 3g5l_A           36 LKKMLPDF-NQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVVLS  114 (253)
T ss_dssp             HHTTCCCC-TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEEEEE
T ss_pred             HHHhhhcc-CCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEEEEE
Confidence            34444332 56799999999999998886   2 899999997            3678999999999998899999999


Q ss_pred             cccccCC-CHHHHHHHHHHhcCcCcEEEEEeecCCC----------CCCC--------C-------------------CC
Q 022592          196 CLSLMGI-NFPNYLQEAQRVLKPSGWLLIAEVKSRF----------DPNT--------G-------------------GA  237 (294)
Q Consensus       196 ~~~l~~~-~~~~~l~el~r~LkpgG~l~i~e~~~~~----------~~~~--------~-------------------~~  237 (294)
                      ..+++|. ++..+++++.++|+|||.+++.......          ....        .                   ..
T Consensus       115 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (253)
T 3g5l_A          115 SLALHYIASFDDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDRYFNESMRTSHFLGEDVQKYHR  194 (253)
T ss_dssp             ESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECHHHHSSSSCSCEECSSCCEEEEEECCTTCCCEEEEEETTEEEEEECC
T ss_pred             chhhhhhhhHHHHHHHHHHHcCCCcEEEEEeCCCccccCccccceeccCCceEEEEeccccccceEEEeeccccCccEec
Confidence            9999995 8999999999999999999997432210          0000        0                   02


Q ss_pred             CHHHHHHHHHHCCCeEEEEe
Q 022592          238 DPNKFSKAVCDLGFAPVSKD  257 (294)
Q Consensus       238 ~~~~~~~~l~~~Gf~~~~~~  257 (294)
                      +.+++..+|+++||+++.+.
T Consensus       195 t~~~~~~~l~~aGF~~~~~~  214 (253)
T 3g5l_A          195 TVTTYIQTLLKNGFQINSVI  214 (253)
T ss_dssp             CHHHHHHHHHHTTEEEEEEE
T ss_pred             CHHHHHHHHHHcCCeeeeee
Confidence            88999999999999999865

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.73  E-value=2.4e-17  Score=141.07  Aligned_cols=128  Identities=16%  Similarity=0.169  Sum_probs=101.5

Q ss_pred             HHHHHHhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccC---------CCCcEEEccCCCC---CCCCC-CccEE
Q 022592          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS---------NDPSVIACDMSNT---PLNSS-SVDVA  193 (294)
Q Consensus       130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~---------~~~~~~~~d~~~l---p~~~~-~fD~V  193 (294)
                      ..++..+... ++.+|||||||+|.++..++   ..|+|+|+|+         .++.+..+|+..+   ++..+ +||+|
T Consensus        42 ~~~~~~~~~~-~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v  120 (227)
T 3e8s_A           42 QAILLAILGR-QPERVLDLGCGEGWLLRALADRGIEAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYDLI  120 (227)
T ss_dssp             HHHHHHHHHT-CCSEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCEEEE
T ss_pred             HHHHHHhhcC-CCCEEEEeCCCCCHHHHHHHHCCCEEEEEcCCHHHHHHHHHhcccccchhhHHhhcccccccCCCccEE
Confidence            3456666655 45799999999999998887   3799999997         4677888887765   54444 59999


Q ss_pred             EEcccccCCCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCC-----------------------CCCCHHHHHHHHHHCC
Q 022592          194 VFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNT-----------------------GGADPNKFSKAVCDLG  250 (294)
Q Consensus       194 i~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~-----------------------~~~~~~~~~~~l~~~G  250 (294)
                      ++..++++.++..+++++.++|+|||.+++.+.........                       ..++.+++..+|+++|
T Consensus       121 ~~~~~l~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG  200 (227)
T 3e8s_A          121 CANFALLHQDIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALDMAG  200 (227)
T ss_dssp             EEESCCCSSCCHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHHHHHHHTT
T ss_pred             EECchhhhhhHHHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccCcccceEEEecHHHHHHHHHHcC
Confidence            99999997799999999999999999999987644222110                       1148999999999999


Q ss_pred             CeEEEEec
Q 022592          251 FAPVSKDF  258 (294)
Q Consensus       251 f~~~~~~~  258 (294)
                      |+++.+..
T Consensus       201 f~~~~~~~  208 (227)
T 3e8s_A          201 LRLVSLQE  208 (227)
T ss_dssp             EEEEEEEC
T ss_pred             CeEEEEec
Confidence            99998554

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.73  E-value=2.8e-17  Score=140.05  Aligned_cols=125  Identities=17%  Similarity=0.200  Sum_probs=101.7

Q ss_pred             HHHHhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccCC---------CCcEEEccCCCCCCCCCCccEEEEcccc
Q 022592          132 IVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVSN---------DPSVIACDMSNTPLNSSSVDVAVFCLSL  199 (294)
Q Consensus       132 ~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~~---------~~~~~~~d~~~lp~~~~~fD~Vi~~~~l  199 (294)
                      +...+....++.+|||||||+|.++..++   ..|+|+|+|+.         ++.+..+|+..++ ++++||+|++..++
T Consensus        34 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l  112 (211)
T 3e23_A           34 LTKFLGELPAGAKILELGCGAGYQAEAMLAAGFDVDATDGSPELAAEASRRLGRPVRTMLFHQLD-AIDAYDAVWAHACL  112 (211)
T ss_dssp             HHHHHTTSCTTCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTSCCEECCGGGCC-CCSCEEEEEECSCG
T ss_pred             HHHHHHhcCCCCcEEEECCCCCHHHHHHHHcCCeEEEECCCHHHHHHHHHhcCCceEEeeeccCC-CCCcEEEEEecCch
Confidence            44444444567899999999999998887   37999999982         6788999999988 78899999999999


Q ss_pred             cCC---CHHHHHHHHHHhcCcCcEEEEEeecCCC------CCCCCCCCHHHHHHHHHHCC-CeEEEEe
Q 022592          200 MGI---NFPNYLQEAQRVLKPSGWLLIAEVKSRF------DPNTGGADPNKFSKAVCDLG-FAPVSKD  257 (294)
Q Consensus       200 ~~~---~~~~~l~el~r~LkpgG~l~i~e~~~~~------~~~~~~~~~~~~~~~l~~~G-f~~~~~~  257 (294)
                      +|.   ++..+++++.++|+|||.+++.......      ......++.+++..+++++| |+++...
T Consensus       113 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~f~~~~~~  180 (211)
T 3e23_A          113 LHVPRDELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAEAGTWASVAVE  180 (211)
T ss_dssp             GGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHHHHHCCCSEEEEE
T ss_pred             hhcCHHHHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHHHHHHhCCCcEEEEEE
Confidence            996   5679999999999999999998544321      11223479999999999999 9998844

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.72  E-value=8.5e-17  Score=140.06  Aligned_cols=127  Identities=13%  Similarity=0.180  Sum_probs=105.0

Q ss_pred             HHHHHhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccC---------------CCCcEEEccCCCCCCCCCCccE
Q 022592          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVDV  192 (294)
Q Consensus       131 ~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~---------------~~~~~~~~d~~~lp~~~~~fD~  192 (294)
                      .++..+... ++.+|||||||+|.++..++   ..|+|+|+|+               .++.++.+|+..+|+++++||+
T Consensus        12 ~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~   90 (239)
T 1xxl_A           12 LMIKTAECR-AEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDI   90 (239)
T ss_dssp             HHHHHHTCC-TTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEEE
T ss_pred             hHHHHhCcC-CCCEEEEEccCcCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCCcEEE
Confidence            355555544 67899999999999998887   4899999987               3578999999999998999999


Q ss_pred             EEEcccccCC-CHHHHHHHHHHhcCcCcEEEEEeecCCC----------------CCCCCCCCHHHHHHHHHHCCCeEEE
Q 022592          193 AVFCLSLMGI-NFPNYLQEAQRVLKPSGWLLIAEVKSRF----------------DPNTGGADPNKFSKAVCDLGFAPVS  255 (294)
Q Consensus       193 Vi~~~~l~~~-~~~~~l~el~r~LkpgG~l~i~e~~~~~----------------~~~~~~~~~~~~~~~l~~~Gf~~~~  255 (294)
                      |++..+++|. ++..++.++.++|+|||.+++.+.....                ......++.+++..+|+++||.++.
T Consensus        91 v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~~~  170 (239)
T 1xxl_A           91 ITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNRLRDPSHVRESSLSEWQAMFSANQLAYQD  170 (239)
T ss_dssp             EEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHTTEEEEE
T ss_pred             EEECCchhhccCHHHHHHHHHHHcCCCcEEEEEEcCCCCChhHHHHHHHHHHhccccccCCCCHHHHHHHHHHCCCcEEE
Confidence            9999999985 8999999999999999999998754311                1123447899999999999999887


Q ss_pred             Eec
Q 022592          256 KDF  258 (294)
Q Consensus       256 ~~~  258 (294)
                      ...
T Consensus       171 ~~~  173 (239)
T 1xxl_A          171 IQK  173 (239)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            544

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.72  E-value=2.2e-17  Score=149.51  Aligned_cols=129  Identities=18%  Similarity=0.241  Sum_probs=105.1

Q ss_pred             HHHHHHhhccCCCCEEEEEcCcccHHHHHhc----cceEEEeccC----------------CCCcEEEccCCCCCCCCCC
Q 022592          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSS  189 (294)
Q Consensus       130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~----------------~~~~~~~~d~~~lp~~~~~  189 (294)
                      ..+++.+....++.+|||||||+|.++..++    ..|+|+|+++                .++.++.+|+..+|+++++
T Consensus       106 ~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  185 (312)
T 3vc1_A          106 EFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDKGA  185 (312)
T ss_dssp             HHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTC
T ss_pred             HHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCCCC
Confidence            3355555433467899999999999988776    3799999987                2588999999999998899


Q ss_pred             ccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEeecCCCCC--------------CCCCCCHHHHHHHHHHCCCeEEE
Q 022592          190 VDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDP--------------NTGGADPNKFSKAVCDLGFAPVS  255 (294)
Q Consensus       190 fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~--------------~~~~~~~~~~~~~l~~~Gf~~~~  255 (294)
                      ||+|++..+++|.++..++.++.++|+|||.+++.++......              ....++.+++..+++++||+++.
T Consensus       186 fD~V~~~~~l~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGf~~~~  265 (312)
T 3vc1_A          186 VTASWNNESTMYVDLHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPSKWVSQINAHFECNIHSRREYLRAMADNRLVPHT  265 (312)
T ss_dssp             EEEEEEESCGGGSCHHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCCHHHHHHHHHHTCCCCBHHHHHHHHHTTTEEEEE
T ss_pred             EeEEEECCchhhCCHHHHHHHHHHHcCCCcEEEEEEccccccccchhHHHHHHHhhhcCCCCCHHHHHHHHHHCCCEEEE
Confidence            9999999999999999999999999999999999875432211              01235889999999999999888


Q ss_pred             Eec
Q 022592          256 KDF  258 (294)
Q Consensus       256 ~~~  258 (294)
                      ...
T Consensus       266 ~~~  268 (312)
T 3vc1_A          266 IVD  268 (312)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            544

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.72  E-value=5.4e-17  Score=145.51  Aligned_cols=130  Identities=15%  Similarity=0.101  Sum_probs=105.0

Q ss_pred             HHHHHHHhh---ccCCCCEEEEEcCcccHHHHHhc----cceEEEeccC----------------CCCcEEEccCCCCCC
Q 022592          129 VNIIVKWLK---DHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS----------------NDPSVIACDMSNTPL  185 (294)
Q Consensus       129 ~~~~~~~l~---~~~~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~----------------~~~~~~~~d~~~lp~  185 (294)
                      +..++..+.   ...++.+|||||||+|.++..++    ..|+|+|+|+                .++.++.+|+..+|+
T Consensus        67 ~~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~  146 (297)
T 2o57_A           67 DEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPC  146 (297)
T ss_dssp             HHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSS
T ss_pred             HHHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCC
Confidence            345666661   33467799999999999988876    3899999997                257899999999999


Q ss_pred             CCCCccEEEEcccccCC-CHHHHHHHHHHhcCcCcEEEEEeecCCCCC-------------CCCCCCHHHHHHHHHHCCC
Q 022592          186 NSSSVDVAVFCLSLMGI-NFPNYLQEAQRVLKPSGWLLIAEVKSRFDP-------------NTGGADPNKFSKAVCDLGF  251 (294)
Q Consensus       186 ~~~~fD~Vi~~~~l~~~-~~~~~l~el~r~LkpgG~l~i~e~~~~~~~-------------~~~~~~~~~~~~~l~~~Gf  251 (294)
                      ++++||+|++..+++|. ++..+++++.++|+|||.|++.++......             .....+..++..+++++||
T Consensus       147 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf  226 (297)
T 2o57_A          147 EDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYRSLAKECGL  226 (297)
T ss_dssp             CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHHTCSSCCCHHHHHHHHHHTTE
T ss_pred             CCCCEeEEEecchhhhcCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCchHHHHHHHHHhcCCCCCCHHHHHHHHHHCCC
Confidence            99999999999999995 889999999999999999999875432111             1112488999999999999


Q ss_pred             eEEEEec
Q 022592          252 APVSKDF  258 (294)
Q Consensus       252 ~~~~~~~  258 (294)
                      +++....
T Consensus       227 ~~~~~~~  233 (297)
T 2o57_A          227 VTLRTFS  233 (297)
T ss_dssp             EEEEEEE
T ss_pred             eEEEEEE
Confidence            9987543

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.72  E-value=6.9e-17  Score=142.85  Aligned_cols=127  Identities=20%  Similarity=0.206  Sum_probs=103.7

Q ss_pred             HHHHHhhccCCCCEEEEEcCcccHHHHHhc----cceEEEeccC----------------CCCcEEEccCCCCCCCCCCc
Q 022592          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSV  190 (294)
Q Consensus       131 ~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~----------------~~~~~~~~d~~~lp~~~~~f  190 (294)
                      .+++.+... ++.+|||||||+|.++..++    ..|+|+|+|+                .++.++.+|+..+|+++++|
T Consensus        52 ~l~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~f  130 (273)
T 3bus_A           52 EMIALLDVR-SGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDASF  130 (273)
T ss_dssp             HHHHHSCCC-TTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCTTCE
T ss_pred             HHHHhcCCC-CCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCCCCc
Confidence            344444333 66799999999999988876    3899999986                25789999999999989999


Q ss_pred             cEEEEcccccCC-CHHHHHHHHHHhcCcCcEEEEEeecCCC----------------CCCCCCCCHHHHHHHHHHCCCeE
Q 022592          191 DVAVFCLSLMGI-NFPNYLQEAQRVLKPSGWLLIAEVKSRF----------------DPNTGGADPNKFSKAVCDLGFAP  253 (294)
Q Consensus       191 D~Vi~~~~l~~~-~~~~~l~el~r~LkpgG~l~i~e~~~~~----------------~~~~~~~~~~~~~~~l~~~Gf~~  253 (294)
                      |+|++..+++|. ++..+++++.++|+|||.+++.++....                .+....++.+++..+++++||++
T Consensus       131 D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~  210 (273)
T 3bus_A          131 DAVWALESLHHMPDRGRALREMARVLRPGGTVAIADFVLLAPVEGAKKEAVDAFRAGGGVLSLGGIDEYESDVRQAELVV  210 (273)
T ss_dssp             EEEEEESCTTTSSCHHHHHHHHHTTEEEEEEEEEEEEEESSCCCHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHTTCEE
T ss_pred             cEEEEechhhhCCCHHHHHHHHHHHcCCCeEEEEEEeeccCCCChhHHHHHHHHHhhcCccCCCCHHHHHHHHHHcCCeE
Confidence            999999999996 8999999999999999999998754321                01223478899999999999999


Q ss_pred             EEEec
Q 022592          254 VSKDF  258 (294)
Q Consensus       254 ~~~~~  258 (294)
                      +....
T Consensus       211 ~~~~~  215 (273)
T 3bus_A          211 TSTVD  215 (273)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            87543

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.72  E-value=1.8e-17  Score=143.36  Aligned_cols=130  Identities=12%  Similarity=0.086  Sum_probs=102.4

Q ss_pred             CCCCEEEEEcCcccHHHHHhc---cceEEEeccC----------CCCcEEEccCCCCCCCCCCccEEEEc-ccccCC---
Q 022592          140 SPSLVIADFGCGDARLAKSVK---NKVFSFDLVS----------NDPSVIACDMSNTPLNSSSVDVAVFC-LSLMGI---  202 (294)
Q Consensus       140 ~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~----------~~~~~~~~d~~~lp~~~~~fD~Vi~~-~~l~~~---  202 (294)
                      .++.+|||||||+|.++..++   ..++|+|+|+          .++.++.+|+..+++ +++||+|++. .+++|.   
T Consensus        39 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~~~~~~~~~  117 (239)
T 3bxo_A           39 PEASSLLDVACGTGTHLEHFTKEFGDTAGLELSEDMLTHARKRLPDATLHQGDMRDFRL-GRKFSAVVSMFSSVGYLKTT  117 (239)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHHSEEEEEESCHHHHHHHHHHCTTCEEEECCTTTCCC-SSCEEEEEECTTGGGGCCSH
T ss_pred             CCCCeEEEecccCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhCCCCEEEECCHHHccc-CCCCcEEEEcCchHhhcCCH
Confidence            356799999999999998887   3799999997          468899999999887 6789999964 488885   


Q ss_pred             -CHHHHHHHHHHhcCcCcEEEEEeecCCCC----------------------------------------C-C-------
Q 022592          203 -NFPNYLQEAQRVLKPSGWLLIAEVKSRFD----------------------------------------P-N-------  233 (294)
Q Consensus       203 -~~~~~l~el~r~LkpgG~l~i~e~~~~~~----------------------------------------~-~-------  233 (294)
                       +...+++++.++|+|||.+++.++.....                                        . .       
T Consensus       118 ~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (239)
T 3bxo_A          118 EELGAAVASFAEHLEPGGVVVVEPWWFPETFADGWVSADVVRRDGRTVARVSHSVREGNATRMEVHFTVADPGKGVRHFS  197 (239)
T ss_dssp             HHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTCEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTEEEEEE
T ss_pred             HHHHHHHHHHHHhcCCCeEEEEEeccCcccccccceEeeEEecCCceEEEEEEEecCCCEEEEEEEEEEecCCCcceEEE
Confidence             34689999999999999999975321100                                        0 0       


Q ss_pred             ----CCCCCHHHHHHHHHHCCCeEEEEeccCCeEEEEEEEE
Q 022592          234 ----TGGADPNKFSKAVCDLGFAPVSKDFSNKMFIMFYFKK  270 (294)
Q Consensus       234 ----~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~f~~i~~~k  270 (294)
                          ...++.+++..+|+++||+++..........+++++|
T Consensus       198 ~~~~~~~~t~~~~~~ll~~aGF~v~~~~~~~~~~~~~va~K  238 (239)
T 3bxo_A          198 DVHLITLFHQAEYEAAFTAAGLRVEYLEGGPSGRGLFVGVP  238 (239)
T ss_dssp             EEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEE
T ss_pred             EEEEeeecCHHHHHHHHHHCCCEEEEeEcCCCCceEEEEec
Confidence                0126899999999999998888776655667777776

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.72  E-value=5.8e-17  Score=140.46  Aligned_cols=141  Identities=18%  Similarity=0.237  Sum_probs=106.5

Q ss_pred             HHHHHHhhcc-CCCCEEEEEcCcccHHHHHhc---cceEEEeccC--------------CCCcEEEccCCCCCCCCCCcc
Q 022592          130 NIIVKWLKDH-SPSLVIADFGCGDARLAKSVK---NKVFSFDLVS--------------NDPSVIACDMSNTPLNSSSVD  191 (294)
Q Consensus       130 ~~~~~~l~~~-~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~--------------~~~~~~~~d~~~lp~~~~~fD  191 (294)
                      ..+...+... .++.+|||||||+|.++..++   ..++|+|+|+              .++.++.+|+..++++ ++||
T Consensus        25 ~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-~~fD  103 (246)
T 1y8c_A           25 DFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNIN-RKFD  103 (246)
T ss_dssp             HHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCS-CCEE
T ss_pred             HHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHCCCcEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCcc-CCce
Confidence            3445555433 356799999999999998887   3799999987              1688999999998876 8899


Q ss_pred             EEEEcc-cccCC----CHHHHHHHHHHhcCcCcEEEEEeecCC-----C----------------C--------------
Q 022592          192 VAVFCL-SLMGI----NFPNYLQEAQRVLKPSGWLLIAEVKSR-----F----------------D--------------  231 (294)
Q Consensus       192 ~Vi~~~-~l~~~----~~~~~l~el~r~LkpgG~l~i~e~~~~-----~----------------~--------------  231 (294)
                      +|++.. +++|.    ++..+++++.++|+|||.+++......     +                .              
T Consensus       104 ~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (246)
T 1y8c_A          104 LITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQFEDDLVSMYISF  183 (246)
T ss_dssp             EEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHHTTTTTCCEEEEETTEEEEEEEEEETTEEEEEEEE
T ss_pred             EEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEEecCHHHHHhhcCcceEEecCCcEEEEEecccCCceEEEEEEE
Confidence            999998 99986    467899999999999999998432110     0                0              


Q ss_pred             --------------CCCCCCCHHHHHHHHHHCCCeEEEEecc--------CCeEEEEEEEEC
Q 022592          232 --------------PNTGGADPNKFSKAVCDLGFAPVSKDFS--------NKMFIMFYFKKK  271 (294)
Q Consensus       232 --------------~~~~~~~~~~~~~~l~~~Gf~~~~~~~~--------~~~f~~i~~~k~  271 (294)
                                    .....++.+++..+|+++||+++.....        .....+++++|.
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aGf~~~~~~~~~~~~~~~~~~~~~~~varK~  245 (246)
T 1y8c_A          184 FVRDGEFYKRFDEEHEERAYKEEDIEKYLKHGQLNILDKVDCYSNKKVEKFTERITYLVKLG  245 (246)
T ss_dssp             EEECSSSEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEEEESSSSCBCCTTCSEEEEEEEEC
T ss_pred             EEecCCcccccEEEEEEEcCCHHHHHHHHHHCCCeEEEEEcccccCcCCCCceeEEEEEEec
Confidence                          0012369999999999999999886422        234556777764

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.72  E-value=4.1e-17  Score=145.53  Aligned_cols=117  Identities=21%  Similarity=0.278  Sum_probs=97.4

Q ss_pred             CCCEEEEEcCcccHHHHHhc---cceEEEeccC----------------CCCcEEEccCCCCC-CCCCCccEEEEccccc
Q 022592          141 PSLVIADFGCGDARLAKSVK---NKVFSFDLVS----------------NDPSVIACDMSNTP-LNSSSVDVAVFCLSLM  200 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~----------------~~~~~~~~d~~~lp-~~~~~fD~Vi~~~~l~  200 (294)
                      ++.+|||||||+|.++..++   ..|+|+|+|+                .++.++.+|+..++ +++++||+|++..+++
T Consensus        68 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l~  147 (285)
T 4htf_A           68 QKLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAVLE  147 (285)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESCGG
T ss_pred             CCCEEEEeCCcchHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECchhh
Confidence            35699999999999998887   4899999997                35679999999887 7789999999999999


Q ss_pred             CC-CHHHHHHHHHHhcCcCcEEEEEeecCC-------------------------CCCCCCCCCHHHHHHHHHHCCCeEE
Q 022592          201 GI-NFPNYLQEAQRVLKPSGWLLIAEVKSR-------------------------FDPNTGGADPNKFSKAVCDLGFAPV  254 (294)
Q Consensus       201 ~~-~~~~~l~el~r~LkpgG~l~i~e~~~~-------------------------~~~~~~~~~~~~~~~~l~~~Gf~~~  254 (294)
                      |. ++..+++++.++|+|||.+++..+...                         .......++.+++..+|+++||+++
T Consensus       148 ~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~v~  227 (285)
T 4htf_A          148 WVADPRSVLQTLWSVLRPGGVLSLMFYNAHGLLMHNMVAGNFDYVQAGMPKKKKRTLSPDYPRDPTQVYLWLEEAGWQIM  227 (285)
T ss_dssp             GCSCHHHHHHHHHHTEEEEEEEEEEEEBHHHHHHHHHHTTCHHHHHTTCCCC----CCCSCCBCHHHHHHHHHHTTCEEE
T ss_pred             cccCHHHHHHHHHHHcCCCeEEEEEEeCCchHHHHHHHhcCHHHHhhhccccccccCCCCCCCCHHHHHHHHHHCCCcee
Confidence            95 899999999999999999999864310                         0011233689999999999999998


Q ss_pred             EEe
Q 022592          255 SKD  257 (294)
Q Consensus       255 ~~~  257 (294)
                      ...
T Consensus       228 ~~~  230 (285)
T 4htf_A          228 GKT  230 (285)
T ss_dssp             EEE
T ss_pred             eee
Confidence            744

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.71  E-value=2.6e-17  Score=145.26  Aligned_cols=127  Identities=19%  Similarity=0.190  Sum_probs=102.0

Q ss_pred             HHHHHHHhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccC---------CCCcEEEccCCCCCCCCCCccEEEEc
Q 022592          129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS---------NDPSVIACDMSNTPLNSSSVDVAVFC  196 (294)
Q Consensus       129 ~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~---------~~~~~~~~d~~~lp~~~~~fD~Vi~~  196 (294)
                      ...+++.+... ++.+|||||||+|.++..++   ..|+|+|+|+         .++.++++|+..+|+++++||+|++.
T Consensus        23 ~~~l~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~  101 (261)
T 3ege_A           23 VNAIINLLNLP-KGSVIADIGAGTGGYSVALANQGLFVYAVEPSIVMRQQAVVHPQVEWFTGYAENLALPDKSVDGVISI  101 (261)
T ss_dssp             HHHHHHHHCCC-TTCEEEEETCTTSHHHHHHHTTTCEEEEECSCHHHHHSSCCCTTEEEECCCTTSCCSCTTCBSEEEEE
T ss_pred             HHHHHHHhCCC-CCCEEEEEcCcccHHHHHHHhCCCEEEEEeCCHHHHHHHHhccCCEEEECchhhCCCCCCCEeEEEEc
Confidence            34455555433 66799999999999999887   4899999997         26789999999999999999999999


Q ss_pred             ccccCC-CHHHHHHHHHHhcCcCcEEEEEeecCCCCCC---------------CCCCCHHHHHHHHHHCCCeEEEEec
Q 022592          197 LSLMGI-NFPNYLQEAQRVLKPSGWLLIAEVKSRFDPN---------------TGGADPNKFSKAVCDLGFAPVSKDF  258 (294)
Q Consensus       197 ~~l~~~-~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~---------------~~~~~~~~~~~~l~~~Gf~~~~~~~  258 (294)
                      .+++|. ++..+++++.++|+ ||++++.++.......               ....+.+.+. +|+++||.++....
T Consensus       102 ~~l~~~~~~~~~l~~~~~~Lk-gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~aGF~~v~~~~  177 (261)
T 3ege_A          102 LAIHHFSHLEKSFQEMQRIIR-DGTIVLLTFDIRLAQRIWLYDYFPFLWEDALRFLPLDEQIN-LLQENTKRRVEAIP  177 (261)
T ss_dssp             SCGGGCSSHHHHHHHHHHHBC-SSCEEEEEECGGGCCCCGGGGTCHHHHHHHHTSCCHHHHHH-HHHHHHCSEEEEEE
T ss_pred             chHhhccCHHHHHHHHHHHhC-CcEEEEEEcCCchhHHHHHHHHHHHHhhhhhhhCCCHHHHH-HHHHcCCCceeEEE
Confidence            999995 89999999999999 9999998765322110               1124667788 99999998877543

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.71  E-value=9e-17  Score=141.03  Aligned_cols=118  Identities=17%  Similarity=0.195  Sum_probs=99.3

Q ss_pred             CCCEEEEEcCcccHHHHHhc----cceEEEeccC-------------CCCcEEEccCCCCCCCCCCccEEEEcccccCC-
Q 022592          141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVS-------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGI-  202 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~-------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~-  202 (294)
                      ++.+|||||||+|.++..++    ..|+|+|+|+             .++.++.+|+..+|+++++||+|++..+++|. 
T Consensus        55 ~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~  134 (266)
T 3ujc_A           55 ENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENNFDLIYSRDAILALS  134 (266)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTCEEEEEEESCGGGSC
T ss_pred             CCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCcEEEEeHHHHHHhcC
Confidence            66799999999999988876    3799999997             36789999999999989999999999999996 


Q ss_pred             --CHHHHHHHHHHhcCcCcEEEEEeecCCCC-C------------CCCCCCHHHHHHHHHHCCCeEEEEec
Q 022592          203 --NFPNYLQEAQRVLKPSGWLLIAEVKSRFD-P------------NTGGADPNKFSKAVCDLGFAPVSKDF  258 (294)
Q Consensus       203 --~~~~~l~el~r~LkpgG~l~i~e~~~~~~-~------------~~~~~~~~~~~~~l~~~Gf~~~~~~~  258 (294)
                        ++..+++++.++|+|||.+++.++..... .            ....++.+++..+++++||+++....
T Consensus       135 ~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  205 (266)
T 3ujc_A          135 LENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDEFKEYVKQRKYTLITVEEYADILTACNFKNVVSKD  205 (266)
T ss_dssp             HHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGGCCHHHHHHHHHHTCCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred             hHHHHHHHHHHHHHcCCCCEEEEEEeccCCcccchHHHHHHHhcCCCCCCCHHHHHHHHHHcCCeEEEEEe
Confidence              67799999999999999999987543220 0            11236889999999999999987543

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.70  E-value=7.1e-17  Score=141.31  Aligned_cols=127  Identities=22%  Similarity=0.200  Sum_probs=102.1

Q ss_pred             HHHHHHHHhhccCCCCEEEEEcCcccHHHHHhc----cceEEEeccC----------------CCCcEEEccCCCCCCCC
Q 022592          128 PVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS----------------NDPSVIACDMSNTPLNS  187 (294)
Q Consensus       128 ~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~----------------~~~~~~~~d~~~lp~~~  187 (294)
                      .+..++..+.. .++.+|||||||+|.++..++    ..|+|+|+|+                .++.++.+|+.++++ +
T Consensus        24 ~~~~l~~~~~~-~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~  101 (256)
T 1nkv_A           24 KYATLGRVLRM-KPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA-N  101 (256)
T ss_dssp             HHHHHHHHTCC-CTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC-S
T ss_pred             HHHHHHHhcCC-CCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCc-C
Confidence            34556666543 367799999999999888776    3899999987                268899999999887 7


Q ss_pred             CCccEEEEcccccCC-CHHHHHHHHHHhcCcCcEEEEEeecCCCCC-------------CCCCCCHHHHHHHHHHCCCeE
Q 022592          188 SSVDVAVFCLSLMGI-NFPNYLQEAQRVLKPSGWLLIAEVKSRFDP-------------NTGGADPNKFSKAVCDLGFAP  253 (294)
Q Consensus       188 ~~fD~Vi~~~~l~~~-~~~~~l~el~r~LkpgG~l~i~e~~~~~~~-------------~~~~~~~~~~~~~l~~~Gf~~  253 (294)
                      ++||+|++..+++|. ++..+++++.++|+|||.+++.+......+             ....++..++..+++++||.+
T Consensus       102 ~~fD~V~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~  181 (256)
T 1nkv_A          102 EKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVGAFDDLGYDV  181 (256)
T ss_dssp             SCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSCCHHHHHHHHHTTTBCC
T ss_pred             CCCCEEEECCChHhcCCHHHHHHHHHHHcCCCeEEEEecCcccCCCChHHHHHHHhcccccccCCHHHHHHHHHHCCCee
Confidence            899999999999986 899999999999999999999864321111             112368899999999999998


Q ss_pred             EEE
Q 022592          254 VSK  256 (294)
Q Consensus       254 ~~~  256 (294)
                      +..
T Consensus       182 ~~~  184 (256)
T 1nkv_A          182 VEM  184 (256)
T ss_dssp             CEE
T ss_pred             EEE
Confidence            764

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.70  E-value=2.4e-17  Score=145.89  Aligned_cols=132  Identities=20%  Similarity=0.208  Sum_probs=98.4

Q ss_pred             CCCEEEEEcCcccHHHHHhc----cceEEEeccCC--------------C------------------------------
Q 022592          141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVSN--------------D------------------------------  172 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~~--------------~------------------------------  172 (294)
                      ++.+|||||||+|.++..++    ..|+|+|+|+.              .                              
T Consensus        55 ~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (263)
T 2a14_A           55 QGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAA  134 (263)
T ss_dssp             CEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred             CCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHHhh
Confidence            56789999999998776554    37999999962              1                              


Q ss_pred             C-cEEEccCCC-CCCC---CCCccEEEEcccccCC-----CHHHHHHHHHHhcCcCcEEEEEeecCCC-C------CCCC
Q 022592          173 P-SVIACDMSN-TPLN---SSSVDVAVFCLSLMGI-----NFPNYLQEAQRVLKPSGWLLIAEVKSRF-D------PNTG  235 (294)
Q Consensus       173 ~-~~~~~d~~~-lp~~---~~~fD~Vi~~~~l~~~-----~~~~~l~el~r~LkpgG~l~i~e~~~~~-~------~~~~  235 (294)
                      + .++.+|+.. .|++   .++||+|+++.+|||.     ++..++++++++|||||.|+++++.... .      ....
T Consensus       135 i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~~~~g~~~~~~~  214 (263)
T 2a14_A          135 VKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFSCV  214 (263)
T ss_dssp             EEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEECC
T ss_pred             hheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCccceeCCeEeecc
Confidence            1 178889887 3433   5789999999999972     3468999999999999999998754321 0      0112


Q ss_pred             CCCHHHHHHHHHHCCCeEEEEecc----------CCeEEEEEEEECC
Q 022592          236 GADPNKFSKAVCDLGFAPVSKDFS----------NKMFIMFYFKKKE  272 (294)
Q Consensus       236 ~~~~~~~~~~l~~~Gf~~~~~~~~----------~~~f~~i~~~k~~  272 (294)
                      .++.+++.++|+++||+++.....          ...+.+++++|.+
T Consensus       215 ~~~~~~l~~~l~~aGF~i~~~~~~~~~~~~~~~~~~~~~~~~a~K~~  261 (263)
T 2a14_A          215 ALEKGEVEQAVLDAGFDIEQLLHSPQSYSVTNAANNGVCCIVARKKP  261 (263)
T ss_dssp             CCCHHHHHHHHHHTTEEEEEEEEECCCCCTTTCCCCCEEEEEEEECC
T ss_pred             ccCHHHHHHHHHHCCCEEEEEeecccccccccCCCCceEEEEEEecC
Confidence            368999999999999999885432          2256677777753

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.69  E-value=3.9e-17  Score=142.71  Aligned_cols=126  Identities=18%  Similarity=0.281  Sum_probs=99.6

Q ss_pred             HHHHhhccCCCCEEEEEcCcccHHHHHhc----cceEEEeccC-------------CCCcEEEccCCCCCCCCCCccEEE
Q 022592          132 IVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS-------------NDPSVIACDMSNTPLNSSSVDVAV  194 (294)
Q Consensus       132 ~~~~l~~~~~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~-------------~~~~~~~~d~~~lp~~~~~fD~Vi  194 (294)
                      ++..+.. .++.+|||||||+|.++..++    ..|+|+|+|+             .++.++.+|+..+++++++||+|+
T Consensus        85 ~l~~l~~-~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~  163 (254)
T 1xtp_A           85 FIASLPG-HGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIV  163 (254)
T ss_dssp             HHHTSTT-CCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEEE
T ss_pred             HHHhhcc-cCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCeEEEE
Confidence            4444432 256799999999999998876    3699999987             257889999999998889999999


Q ss_pred             EcccccCC---CHHHHHHHHHHhcCcCcEEEEEeecCCCC-------CCCCCCCHHHHHHHHHHCCCeEEEEec
Q 022592          195 FCLSLMGI---NFPNYLQEAQRVLKPSGWLLIAEVKSRFD-------PNTGGADPNKFSKAVCDLGFAPVSKDF  258 (294)
Q Consensus       195 ~~~~l~~~---~~~~~l~el~r~LkpgG~l~i~e~~~~~~-------~~~~~~~~~~~~~~l~~~Gf~~~~~~~  258 (294)
                      +..+++|.   ++..++.++.++|+|||.+++.+......       .....++.+++..+|+++||+++....
T Consensus       164 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~  237 (254)
T 1xtp_A          164 IQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEAF  237 (254)
T ss_dssp             EESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEEEE
T ss_pred             EcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccceecccCCcccCCHHHHHHHHHHCCCEEEEeee
Confidence            99999996   36799999999999999999987422110       011125889999999999999988543

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.69  E-value=1.6e-16  Score=137.73  Aligned_cols=117  Identities=19%  Similarity=0.192  Sum_probs=96.4

Q ss_pred             CCCEEEEEcCcccHHHHHhc---cceEEEeccC----------------CCCcEEEccCCCCCCCCCCccEEEEcccccC
Q 022592          141 PSLVIADFGCGDARLAKSVK---NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMG  201 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~----------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~  201 (294)
                      ++.+|||||||+|.++..++   ..|+|+|+|+                .++.++.+|+..++ ++++||+|+++.+++|
T Consensus        66 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~fD~v~~~~~l~~  144 (235)
T 3lcc_A           66 PLGRALVPGCGGGHDVVAMASPERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWR-PTELFDLIFDYVFFCA  144 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHCBTTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCC-CSSCEEEEEEESSTTT
T ss_pred             CCCCEEEeCCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCC-CCCCeeEEEEChhhhc
Confidence            34599999999999999887   3799999997                13789999999877 4568999999999998


Q ss_pred             C---CHHHHHHHHHHhcCcCcEEEEEeecCCCCC--CCCCCCHHHHHHHHHHCCCeEEEEec
Q 022592          202 I---NFPNYLQEAQRVLKPSGWLLIAEVKSRFDP--NTGGADPNKFSKAVCDLGFAPVSKDF  258 (294)
Q Consensus       202 ~---~~~~~l~el~r~LkpgG~l~i~e~~~~~~~--~~~~~~~~~~~~~l~~~Gf~~~~~~~  258 (294)
                      .   ++..++.++.++|+|||.|++.++......  ....++.+++..+|+++||+++....
T Consensus       145 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  206 (235)
T 3lcc_A          145 IEPEMRPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVDVSTFEEVLVPIGFKAVSVEE  206 (235)
T ss_dssp             SCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCCCHHHHHHHHGGGTEEEEEEEE
T ss_pred             CCHHHHHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccCCHHHHHHHHHHcCCeEEEEEe
Confidence            5   678999999999999999999876543222  11236899999999999999988554

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.69  E-value=1e-15  Score=127.60  Aligned_cols=133  Identities=20%  Similarity=0.240  Sum_probs=105.3

Q ss_pred             HHHHHHhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccC----------CCCcEEEccCCCCCCCCCCccEEEEc
Q 022592          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS----------NDPSVIACDMSNTPLNSSSVDVAVFC  196 (294)
Q Consensus       130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~----------~~~~~~~~d~~~lp~~~~~fD~Vi~~  196 (294)
                      ..++..+.  .++.+|||||||+|.++..++   ..++|+|+++          .++.++.+|+..+++++++||+|++.
T Consensus        37 ~~~l~~~~--~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~  114 (195)
T 3cgg_A           37 ARLIDAMA--PRGAKILDAGCGQGRIGGYLSKQGHDVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVSA  114 (195)
T ss_dssp             HHHHHHHS--CTTCEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEEC
T ss_pred             HHHHHHhc--cCCCeEEEECCCCCHHHHHHHHCCCcEEEEcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEEC
Confidence            34455442  356799999999999988886   4899999997          46889999999988888899999998


Q ss_pred             -ccccCC---CHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEEecc--------CCeEE
Q 022592          197 -LSLMGI---NFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSKDFS--------NKMFI  264 (294)
Q Consensus       197 -~~l~~~---~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~--------~~~f~  264 (294)
                       .+++|.   +...++.++.++|+|||.+++......      .++.+++..+++++||+++.....        ...+.
T Consensus       115 ~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~~------~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~~  188 (195)
T 3cgg_A          115 GNVMGFLAEDGREPALANIHRALGADGRAVIGFGAGR------GWVFGDFLEVAERVGLELENAFESWDLKPFVQGSEFL  188 (195)
T ss_dssp             CCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEETTS------SCCHHHHHHHHHHHTEEEEEEESSTTCCBCCTTCSEE
T ss_pred             CcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCCCC------CcCHHHHHHHHHHcCCEEeeeecccccCcCCCCCcEE
Confidence             677775   347899999999999999999754332      357899999999999999885432        33456


Q ss_pred             EEEEEE
Q 022592          265 MFYFKK  270 (294)
Q Consensus       265 ~i~~~k  270 (294)
                      +++++|
T Consensus       189 ~~v~~k  194 (195)
T 3cgg_A          189 VAVFTK  194 (195)
T ss_dssp             EEEEEE
T ss_pred             EEEEec
Confidence            666655

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.69  E-value=1.5e-16  Score=141.46  Aligned_cols=126  Identities=15%  Similarity=0.154  Sum_probs=102.8

Q ss_pred             HHHHHHhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccC----------CCCcEEEccCCCCCCCCCCccEEEEc
Q 022592          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS----------NDPSVIACDMSNTPLNSSSVDVAVFC  196 (294)
Q Consensus       130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~----------~~~~~~~~d~~~lp~~~~~fD~Vi~~  196 (294)
                      ..+++.+... ++.+|||||||+|.++..++   ..|+|+|+|+          .++.+..+|+..+|+ +++||+|++.
T Consensus        47 ~~l~~~l~~~-~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~  124 (279)
T 3ccf_A           47 EDLLQLLNPQ-PGEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATMIEKARQNYPHLHFDVADARNFRV-DKPLDAVFSN  124 (279)
T ss_dssp             CHHHHHHCCC-TTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTTSCEEECCTTTCCC-SSCEEEEEEE
T ss_pred             HHHHHHhCCC-CCCEEEEecCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHhhCCCCEEEECChhhCCc-CCCcCEEEEc
Confidence            4456666543 66799999999999998886   4899999997          378999999999887 5789999999


Q ss_pred             ccccC-CCHHHHHHHHHHhcCcCcEEEEEeecCCC----------------------CCCCCCCCHHHHHHHHHHCCCeE
Q 022592          197 LSLMG-INFPNYLQEAQRVLKPSGWLLIAEVKSRF----------------------DPNTGGADPNKFSKAVCDLGFAP  253 (294)
Q Consensus       197 ~~l~~-~~~~~~l~el~r~LkpgG~l~i~e~~~~~----------------------~~~~~~~~~~~~~~~l~~~Gf~~  253 (294)
                      .+++| .++..+++++.++|+|||.+++.......                      ......++.+++..+|+++||++
T Consensus       125 ~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~  204 (279)
T 3ccf_A          125 AMLHWVKEPEAAIASIHQALKSGGRFVAEFGGKGNIKYILEALYNALETLGIHNPQALNPWYFPSIGEYVNILEKQGFDV  204 (279)
T ss_dssp             SCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECTTTTHHHHHHHHHHHHHHTCCCGGGGCCCCCCCHHHHHHHHHHHTEEE
T ss_pred             chhhhCcCHHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHHhcCCccccCcCceeCCCHHHHHHHHHHcCCEE
Confidence            99999 48999999999999999999997654211                      01112358899999999999998


Q ss_pred             EEEe
Q 022592          254 VSKD  257 (294)
Q Consensus       254 ~~~~  257 (294)
                      +...
T Consensus       205 ~~~~  208 (279)
T 3ccf_A          205 TYAA  208 (279)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8754

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.69  E-value=8.7e-17  Score=139.97  Aligned_cols=117  Identities=17%  Similarity=0.343  Sum_probs=95.3

Q ss_pred             CCCEEEEEcCcccHHHHHhc----cceEEEeccCC---------------CCcEEEccCCCCCCCCCCccEEEEcccccC
Q 022592          141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVSN---------------DPSVIACDMSNTPLNSSSVDVAVFCLSLMG  201 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~~---------------~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~  201 (294)
                      ++.+|||||||+|.++..++    ..|+|+|+|+.               ++.++.+|+..+++++++||+|++..+++|
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~  158 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGH  158 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGGG
T ss_pred             CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhhh
Confidence            46799999999999999876    37999999871               367899999998888889999999999999


Q ss_pred             C-C--HHHHHHHHHHhcCcCcEEEEEeecCCC----CCCCC--CCCHHHHHHHHHHCCCeEEEEe
Q 022592          202 I-N--FPNYLQEAQRVLKPSGWLLIAEVKSRF----DPNTG--GADPNKFSKAVCDLGFAPVSKD  257 (294)
Q Consensus       202 ~-~--~~~~l~el~r~LkpgG~l~i~e~~~~~----~~~~~--~~~~~~~~~~l~~~Gf~~~~~~  257 (294)
                      . +  ...+++++.++|+|||.+++.+.....    .....  ..+.+++.++++++||+++...
T Consensus       159 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~  223 (241)
T 2ex4_A          159 LTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEE  223 (241)
T ss_dssp             SCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEE
T ss_pred             CCHHHHHHHHHHHHHhcCCCeEEEEEEccCCCcceecccCCcccCCHHHHHHHHHHcCCeEEEee
Confidence            6 3  348999999999999999998754321    11111  1378999999999999998854

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.68  E-value=6.4e-16  Score=132.29  Aligned_cols=141  Identities=14%  Similarity=0.150  Sum_probs=107.2

Q ss_pred             HHHHHHhhccCCCCEEEEEcCcccHHHHHhc-----cceEEEeccC----------C----------CCcEEEccCCCCC
Q 022592          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS----------N----------DPSVIACDMSNTP  184 (294)
Q Consensus       130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~----------~----------~~~~~~~d~~~lp  184 (294)
                      +.+++.+... ++.+|||||||+|.++..++     ..|+|+|+|+          .          ++.++.+|+...+
T Consensus        19 ~~l~~~l~~~-~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~   97 (219)
T 3jwg_A           19 GTVVAVLKSV-NAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRD   97 (219)
T ss_dssp             HHHHHHHHHT-TCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCC
T ss_pred             HHHHHHHhhc-CCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccc
Confidence            3355555544 56799999999999998886     3899999997          1          7889999998888


Q ss_pred             CCCCCccEEEEcccccCCCH---HHHHHHHHHhcCcCcEEEEEeecCC---C----------CCCCCCCCHHHHH----H
Q 022592          185 LNSSSVDVAVFCLSLMGINF---PNYLQEAQRVLKPSGWLLIAEVKSR---F----------DPNTGGADPNKFS----K  244 (294)
Q Consensus       185 ~~~~~fD~Vi~~~~l~~~~~---~~~l~el~r~LkpgG~l~i~e~~~~---~----------~~~~~~~~~~~~~----~  244 (294)
                      +++++||+|++..+++|.+.   ..+++++.++|+|||.+++......   +          ......++.+++.    .
T Consensus        98 ~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  177 (219)
T 3jwg_A           98 KRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPNKEYNFHYGNLFEGNLRHRDHRFEWTRKEFQTWAVK  177 (219)
T ss_dssp             GGGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBGGGGGCCCCT-----GGGCCTTSBCHHHHHHHHHH
T ss_pred             cccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccchhhhhhhcccCcccccccCceeeecHHHHHHHHHH
Confidence            88889999999999999643   5899999999999997666542211   1          1111225888888    8


Q ss_pred             HHHHCCCeEEEEec------cCCeEEEEEEEEC
Q 022592          245 AVCDLGFAPVSKDF------SNKMFIMFYFKKK  271 (294)
Q Consensus       245 ~l~~~Gf~~~~~~~------~~~~f~~i~~~k~  271 (294)
                      +++++||++.....      ......+.+|+|.
T Consensus       178 l~~~~Gf~v~~~~~g~~~~~~g~~~qi~~~~~~  210 (219)
T 3jwg_A          178 VAEKYGYSVRFLQIGEIDDEFGSPTQMGVFTLG  210 (219)
T ss_dssp             HHHHHTEEEEEEEESCCCTTSCCSEEEEEEEEC
T ss_pred             HHHHCCcEEEEEecCCccccCCCCeEEEEEecc
Confidence            89999998877532      3445678888875

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.68  E-value=1.5e-16  Score=139.47  Aligned_cols=145  Identities=22%  Similarity=0.299  Sum_probs=107.1

Q ss_pred             HHHHHHhHHhhhccCCCcHHHHHHHHhh----ccCCCCEEEEEcCcccHHHHHhc---cceEEEeccC------------
Q 022592          110 FDMYHSGYQEQMSHWPELPVNIIVKWLK----DHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS------------  170 (294)
Q Consensus       110 ~d~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~------------  170 (294)
                      |+.....|.... ..+......+++.+.    ...++.+|||||||+|.++..++   ..|+|+|+|+            
T Consensus         5 ~~~~a~~y~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~   83 (263)
T 2yqz_A            5 LLRAAYAYDRLR-AHPPEVAGQIATAMASAVHPKGEEPVFLELGVGTGRIALPLIARGYRYIALDADAAMLEVFRQKIAG   83 (263)
T ss_dssp             HHHHHHHHHHHH-CCCHHHHHHHHHHHHHHCCCSSSCCEEEEETCTTSTTHHHHHTTTCEEEEEESCHHHHHHHHHHTTT
T ss_pred             hHHHHHHHhhhc-ccChHHHHHHHHHHHHhhcCCCCCCEEEEeCCcCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhc
Confidence            444444444333 223333445555552    22466799999999999998887   4899999986            


Q ss_pred             --CCCcEEEccCCCCCCCCCCccEEEEcccccCC-CHHHHHHHHHHhcCcCcEEEEEeecCC---C--------------
Q 022592          171 --NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGI-NFPNYLQEAQRVLKPSGWLLIAEVKSR---F--------------  230 (294)
Q Consensus       171 --~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~-~~~~~l~el~r~LkpgG~l~i~e~~~~---~--------------  230 (294)
                        .++.++.+|+..+|+++++||+|++..+++|. ++..++.++.++|+|||.+++. +...   .              
T Consensus        84 ~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~-~~~~~~~~~~~~~~~~~~~~~~  162 (263)
T 2yqz_A           84 VDRKVQVVQADARAIPLPDESVHGVIVVHLWHLVPDWPKVLAEAIRVLKPGGALLEG-WDQAEASPEWTLQERWRAFAAE  162 (263)
T ss_dssp             SCTTEEEEESCTTSCCSCTTCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEE-EEEECCCHHHHHHHHHHHHHHH
T ss_pred             cCCceEEEEcccccCCCCCCCeeEEEECCchhhcCCHHHHHHHHHHHCCCCcEEEEE-ecCCCccHHHHHHHHHHHHHHH
Confidence              36789999999999988999999999999996 8999999999999999999987 3221   0              


Q ss_pred             -C-C---CCCCCCHHHHHHHHHHCCCeEEEE
Q 022592          231 -D-P---NTGGADPNKFSKAVCDLGFAPVSK  256 (294)
Q Consensus       231 -~-~---~~~~~~~~~~~~~l~~~Gf~~~~~  256 (294)
                       . +   ....++.+++..+|+++||.++..
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~  193 (263)
T 2yqz_A          163 EGFPVERGLHAKRLKEVEEALRRLGLKPRTR  193 (263)
T ss_dssp             HTCCCCCCHHHHHHHHHHHHHHHTTCCCEEE
T ss_pred             hCCCcccccccCCHHHHHHHHHHcCCCcceE
Confidence             0 0   001246678899999999997764

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.67  E-value=1.1e-16  Score=136.30  Aligned_cols=116  Identities=8%  Similarity=0.061  Sum_probs=90.5

Q ss_pred             CCCEEEEEcCcccHHHHHhc---cceEEEeccC---------------------------CCCcEEEccCCCCCCCC-CC
Q 022592          141 PSLVIADFGCGDARLAKSVK---NKVFSFDLVS---------------------------NDPSVIACDMSNTPLNS-SS  189 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~---------------------------~~~~~~~~d~~~lp~~~-~~  189 (294)
                      ++.+|||+|||+|.++..++   ..|+|+|+|+                           .++.++++|+.++++++ ++
T Consensus        22 ~~~~vLD~GCG~G~~~~~la~~g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~~~  101 (203)
T 1pjz_A           22 PGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDIGH  101 (203)
T ss_dssp             TTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHHHS
T ss_pred             CCCEEEEeCCCCcHhHHHHHHCCCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcccCCC
Confidence            56799999999999999887   3899999996                           14689999999998765 78


Q ss_pred             ccEEEEcccccCCC---HHHHHHHHHHhcCcCcEEEEEeecCCC---CCCCCCCCHHHHHHHHHHCCCeEEEEe
Q 022592          190 VDVAVFCLSLMGIN---FPNYLQEAQRVLKPSGWLLIAEVKSRF---DPNTGGADPNKFSKAVCDLGFAPVSKD  257 (294)
Q Consensus       190 fD~Vi~~~~l~~~~---~~~~l~el~r~LkpgG~l~i~e~~~~~---~~~~~~~~~~~~~~~l~~~Gf~~~~~~  257 (294)
                      ||+|++..+++|.+   ...+++++.++|||||.++++.+....   ......++.+++..++.. ||+++...
T Consensus       102 fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~-gf~i~~~~  174 (203)
T 1pjz_A          102 CAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQALLEGPPFSVPQTWLHRVMSG-NWEVTKVG  174 (203)
T ss_dssp             EEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSSSCCCCCCHHHHHHTSCS-SEEEEEEE
T ss_pred             EEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCccccCCCCCCCCHHHHHHHhcC-CcEEEEec
Confidence            99999999998863   457899999999999985544332111   111112588999999988 99887643

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.67  E-value=2.2e-16  Score=142.52  Aligned_cols=131  Identities=13%  Similarity=0.087  Sum_probs=103.6

Q ss_pred             CCCCEEEEEcCcccHHHHHhc------cceEEEeccC----------------CCCcEEEccCCCCCCCCCCccEEEEcc
Q 022592          140 SPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSVDVAVFCL  197 (294)
Q Consensus       140 ~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~----------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~  197 (294)
                      .++.+|||||||+|.++..++      ..|+|+|+|+                .++.++.+|+.+++++ ++||+|+++.
T Consensus       117 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~  195 (305)
T 3ocj_A          117 RPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTR-EGYDLLTSNG  195 (305)
T ss_dssp             CTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCC-SCEEEEECCS
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCcc-CCeEEEEECC
Confidence            467799999999999999884      2899999987                1378999999999987 8999999999


Q ss_pred             cccCC-CHHH---HHHHHHHhcCcCcEEEEEeecCCCCC------------------------------CCCCCCHHHHH
Q 022592          198 SLMGI-NFPN---YLQEAQRVLKPSGWLLIAEVKSRFDP------------------------------NTGGADPNKFS  243 (294)
Q Consensus       198 ~l~~~-~~~~---~l~el~r~LkpgG~l~i~e~~~~~~~------------------------------~~~~~~~~~~~  243 (294)
                      +++|. ++..   +++++.++|+|||.+++.++......                              ....++.+++.
T Consensus       196 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (305)
T 3ocj_A          196 LNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQTR  275 (305)
T ss_dssp             SGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHHHHH
T ss_pred             hhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCHHHHH
Confidence            99995 6654   79999999999999999875431110                              00226899999


Q ss_pred             HHHHHCCCeEEEEec-cCCeEEEEEEEEC
Q 022592          244 KAVCDLGFAPVSKDF-SNKMFIMFYFKKK  271 (294)
Q Consensus       244 ~~l~~~Gf~~~~~~~-~~~~f~~i~~~k~  271 (294)
                      .+|+++||+++.... ....+.+++++|.
T Consensus       276 ~~l~~aGF~~v~~~~~~~~~~~~v~a~Kp  304 (305)
T 3ocj_A          276 AQLEEAGFTDLRFEDDRARLFPTVIARKP  304 (305)
T ss_dssp             HHHHHTTCEEEEEECCTTSSSCEEEEECC
T ss_pred             HHHHHCCCEEEEEEcccCceeeEEEEecC
Confidence            999999999988663 3445556666653

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.67  E-value=1.3e-16  Score=137.22  Aligned_cols=117  Identities=21%  Similarity=0.279  Sum_probs=97.6

Q ss_pred             CCCEEEEEcCcccHHHHHhc---cceEEEeccCC--------------------CCcEEEccCCCCCCCCCCccEEEEcc
Q 022592          141 PSLVIADFGCGDARLAKSVK---NKVFSFDLVSN--------------------DPSVIACDMSNTPLNSSSVDVAVFCL  197 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~~--------------------~~~~~~~d~~~lp~~~~~fD~Vi~~~  197 (294)
                      ++.+|||||||+|.++..++   ..|+|+|+++.                    ++.++.+|+..+++++++||+|++..
T Consensus        30 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~  109 (235)
T 3sm3_A           30 EDDEILDIGCGSGKISLELASKGYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVMQA  109 (235)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEEEES
T ss_pred             CCCeEEEECCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEEEcc
Confidence            56799999999999998887   48999999871                    35789999999999899999999999


Q ss_pred             cccCC-CHH---HHHHHHHHhcCcCcEEEEEeecCCCCC--------------------------------CCCCCCHHH
Q 022592          198 SLMGI-NFP---NYLQEAQRVLKPSGWLLIAEVKSRFDP--------------------------------NTGGADPNK  241 (294)
Q Consensus       198 ~l~~~-~~~---~~l~el~r~LkpgG~l~i~e~~~~~~~--------------------------------~~~~~~~~~  241 (294)
                      +++|. ++.   .+++++.++|+|||.+++.++......                                ....++.++
T Consensus       110 ~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (235)
T 3sm3_A          110 FLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLKLYRKRYLHDFPITKEEGSFLARDPETGETEFIAHHFTEKE  189 (235)
T ss_dssp             CGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTSHHHHHHHHHHHHHHCSTTEEEEECTTTCCEEEEEECBCHHH
T ss_pred             hhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhHHHHHHHhhhhccchhhhcceEecccccCCcceeeEeCCHHH
Confidence            99996 666   899999999999999999876432100                                011368999


Q ss_pred             HHHHHHHCCCeEEEEe
Q 022592          242 FSKAVCDLGFAPVSKD  257 (294)
Q Consensus       242 ~~~~l~~~Gf~~~~~~  257 (294)
                      +..+|+++||+++.+.
T Consensus       190 l~~ll~~aGf~~~~~~  205 (235)
T 3sm3_A          190 LVFLLTDCRFEIDYFR  205 (235)
T ss_dssp             HHHHHHTTTEEEEEEE
T ss_pred             HHHHHHHcCCEEEEEE
Confidence            9999999999998843

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.67  E-value=1.3e-16  Score=141.35  Aligned_cols=119  Identities=18%  Similarity=0.333  Sum_probs=98.0

Q ss_pred             CCCCEEEEEcCcccHHHHHhc-----cceEEEeccC---------------CCCcEEEccCCCCCCCCCCccEEEEcccc
Q 022592          140 SPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVDVAVFCLSL  199 (294)
Q Consensus       140 ~~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~---------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l  199 (294)
                      .++.+|||||||+|.++..++     ..|+|+|+++               .++.++.+|+..+++++++||+|++..++
T Consensus        36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l  115 (276)
T 3mgg_A           36 PPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFVL  115 (276)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEESCG
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEechh
Confidence            467899999999999988876     3799999986               36789999999999989999999999999


Q ss_pred             cCC-CHHHHHHHHHHhcCcCcEEEEEeecCCC---CC-------------------CCCCCCHHHHHHHHHHCCCeEEEE
Q 022592          200 MGI-NFPNYLQEAQRVLKPSGWLLIAEVKSRF---DP-------------------NTGGADPNKFSKAVCDLGFAPVSK  256 (294)
Q Consensus       200 ~~~-~~~~~l~el~r~LkpgG~l~i~e~~~~~---~~-------------------~~~~~~~~~~~~~l~~~Gf~~~~~  256 (294)
                      +|. ++..++.++.++|+|||.+++.+.....   .+                   ....++...+..+|+++||+++.+
T Consensus       116 ~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~v~~  195 (276)
T 3mgg_A          116 EHLQSPEEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAYMKGNSLVGRQIYPLLQESGFEKIRV  195 (276)
T ss_dssp             GGCSCHHHHHHHHHHHEEEEEEEEEEEECGGGCEEESCCHHHHHHHHHHHHHHHHTTCCTTGGGGHHHHHHHTTCEEEEE
T ss_pred             hhcCCHHHHHHHHHHHcCCCcEEEEEEcCCCCceECCCcHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHCCCCeEEE
Confidence            995 8899999999999999999998743211   01                   111245578899999999999876


Q ss_pred             ec
Q 022592          257 DF  258 (294)
Q Consensus       257 ~~  258 (294)
                      ..
T Consensus       196 ~~  197 (276)
T 3mgg_A          196 EP  197 (276)
T ss_dssp             EE
T ss_pred             ee
Confidence            53

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.66  E-value=3.2e-16  Score=140.00  Aligned_cols=129  Identities=20%  Similarity=0.269  Sum_probs=100.8

Q ss_pred             HHHHHHhhccCCCCEEEEEcCcccHHHHHhc------cceEEEeccC--------------CCCcEEEccCCCCCCCCCC
Q 022592          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS--------------NDPSVIACDMSNTPLNSSS  189 (294)
Q Consensus       130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~--------------~~~~~~~~d~~~lp~~~~~  189 (294)
                      ..++..+....++.+|||||||+|.++..++      ..|+|+|+|+              .++.++++|+.+++++ ++
T Consensus        11 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~   89 (284)
T 3gu3_A           11 SFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELN-DK   89 (284)
T ss_dssp             HHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCS-SC
T ss_pred             HHHHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCcC-CC
Confidence            4445555444467899999999999998886      3799999997              1678999999998884 68


Q ss_pred             ccEEEEcccccCC-CHHHHHHHHHHhcCcCcEEEEEeec-----CCCCC-------------------------CCCCCC
Q 022592          190 VDVAVFCLSLMGI-NFPNYLQEAQRVLKPSGWLLIAEVK-----SRFDP-------------------------NTGGAD  238 (294)
Q Consensus       190 fD~Vi~~~~l~~~-~~~~~l~el~r~LkpgG~l~i~e~~-----~~~~~-------------------------~~~~~~  238 (294)
                      ||+|++..+++|. ++..+++++.++|+|||++++.+..     ..+..                         ......
T Consensus        90 fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (284)
T 3gu3_A           90 YDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGNI  169 (284)
T ss_dssp             EEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECCHHHHHHSEEETTSCHHHHCCHHHHHHHHHHHHHHTCCCTTG
T ss_pred             eeEEEECChhhcCCCHHHHHHHHHHHcCCCCEEEEEecchhcccccceecCcchhhccchHHHHHHHHHHhhhhcccccH
Confidence            9999999999995 8999999999999999999998765     11100                         011134


Q ss_pred             HHHHHHHHHHCCCeEEEEecc
Q 022592          239 PNKFSKAVCDLGFAPVSKDFS  259 (294)
Q Consensus       239 ~~~~~~~l~~~Gf~~~~~~~~  259 (294)
                      ...+..+|+++||..+.....
T Consensus       170 ~~~l~~~l~~aGF~~v~~~~~  190 (284)
T 3gu3_A          170 GMKIPIYLSELGVKNIECRVS  190 (284)
T ss_dssp             GGTHHHHHHHTTCEEEEEEEC
T ss_pred             HHHHHHHHHHcCCCeEEEEEc
Confidence            567889999999988876443

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=99.66  E-value=2.1e-15  Score=138.73  Aligned_cols=137  Identities=14%  Similarity=0.079  Sum_probs=105.5

Q ss_pred             HHHHHHhhccCCCCEEEEEcCcccHHHHHhcc-----ceEEEeccC-------------CCCcEEEccCCCCCCCCCCcc
Q 022592          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVKN-----KVFSFDLVS-------------NDPSVIACDMSNTPLNSSSVD  191 (294)
Q Consensus       130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~~-----~v~gvD~s~-------------~~~~~~~~d~~~lp~~~~~fD  191 (294)
                      ..+++.+... ++.+|||||||+|.++..++.     .++++|++.             .++.++.+|+. .+++  +||
T Consensus       174 ~~~~~~~~~~-~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~~~~~~~~~~~~v~~~~~d~~-~~~p--~~D  249 (348)
T 3lst_A          174 LILARAGDFP-ATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGRWKVVEGDFL-REVP--HAD  249 (348)
T ss_dssp             HHHHHHSCCC-SSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHHHHTTCCCCCGGGTTSEEEEECCTT-TCCC--CCS
T ss_pred             HHHHHhCCcc-CCceEEEECCccCHHHHHHHHHCCCCEEEEecCHHHhhcccccccCCCCCeEEEecCCC-CCCC--CCc
Confidence            3455555432 567999999999999988862     688999863             35789999996 4444  799


Q ss_pred             EEEEcccccCC-CH--HHHHHHHHHhcCcCcEEEEEeecCCCC----------------CCCCCCCHHHHHHHHHHCCCe
Q 022592          192 VAVFCLSLMGI-NF--PNYLQEAQRVLKPSGWLLIAEVKSRFD----------------PNTGGADPNKFSKAVCDLGFA  252 (294)
Q Consensus       192 ~Vi~~~~l~~~-~~--~~~l~el~r~LkpgG~l~i~e~~~~~~----------------~~~~~~~~~~~~~~l~~~Gf~  252 (294)
                      +|++..+|||. +.  ..++++++++|+|||.|+|.+......                .....++.+++..+++++||+
T Consensus       250 ~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~  329 (348)
T 3lst_A          250 VHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDAHQSKEMDFMMLAARTGQERTAAELEPLFTAAGLR  329 (348)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSCCHHHHHHHHHHHTTSCCCCBHHHHHHHHHHTTEE
T ss_pred             EEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhhhcChhhhhcCCCcCCCHHHHHHHHHHCCCc
Confidence            99999999986 33  599999999999999999987532211                111236899999999999999


Q ss_pred             EEEEeccCCeEEEEEEEE
Q 022592          253 PVSKDFSNKMFIMFYFKK  270 (294)
Q Consensus       253 ~~~~~~~~~~f~~i~~~k  270 (294)
                      ++.+......+.++++++
T Consensus       330 ~~~~~~~~~~~~vie~~p  347 (348)
T 3lst_A          330 LDRVVGTSSVMSIAVGVP  347 (348)
T ss_dssp             EEEEEECSSSCEEEEEEE
T ss_pred             eEEEEECCCCcEEEEEEe
Confidence            999776667777887765

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.66  E-value=4.9e-16  Score=144.88  Aligned_cols=115  Identities=23%  Similarity=0.307  Sum_probs=96.4

Q ss_pred             CCCEEEEEcCcccHHHHHhc------cceEEEeccC-----------------------CCCcEEEccCCCC------CC
Q 022592          141 PSLVIADFGCGDARLAKSVK------NKVFSFDLVS-----------------------NDPSVIACDMSNT------PL  185 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~-----------------------~~~~~~~~d~~~l------p~  185 (294)
                      ++.+|||||||+|.++..++      ..|+|+|+|+                       .++.++.+|+..+      ++
T Consensus        83 ~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~~  162 (383)
T 4fsd_A           83 EGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGV  162 (383)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCCC
T ss_pred             CCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCCC
Confidence            66799999999999887775      2799999986                       2678999999987      88


Q ss_pred             CCCCccEEEEcccccCC-CHHHHHHHHHHhcCcCcEEEEEeecCCCC--------------CCCCCCCHHHHHHHHHHCC
Q 022592          186 NSSSVDVAVFCLSLMGI-NFPNYLQEAQRVLKPSGWLLIAEVKSRFD--------------PNTGGADPNKFSKAVCDLG  250 (294)
Q Consensus       186 ~~~~fD~Vi~~~~l~~~-~~~~~l~el~r~LkpgG~l~i~e~~~~~~--------------~~~~~~~~~~~~~~l~~~G  250 (294)
                      ++++||+|+++.+++|. ++..+++++.++|+|||+|++.++.....              .....++.+++..+|+++|
T Consensus       163 ~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aG  242 (383)
T 4fsd_A          163 PDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPILYGECLGGALYLEDFRRLVAEAG  242 (383)
T ss_dssp             CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHHCHHHHHTTCTTCCBHHHHHHHHHHTT
T ss_pred             CCCCEEEEEEccchhcCCCHHHHHHHHHHHcCCCCEEEEEEeccccccCHhHhhhHHHhhcccccCCCHHHHHHHHHHCC
Confidence            89999999999999995 89999999999999999999987543211              1122367899999999999


Q ss_pred             CeEEE
Q 022592          251 FAPVS  255 (294)
Q Consensus       251 f~~~~  255 (294)
                      |.++.
T Consensus       243 F~~v~  247 (383)
T 4fsd_A          243 FRDVR  247 (383)
T ss_dssp             CCCEE
T ss_pred             CceEE
Confidence            98775

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.66  E-value=6.1e-16  Score=132.65  Aligned_cols=129  Identities=17%  Similarity=0.252  Sum_probs=100.8

Q ss_pred             CCCEEEEEcCcccHHHHHhc---cceEEEeccC--------------CCCcEEEccCCCCCCCCCCccEEEEccccc--C
Q 022592          141 PSLVIADFGCGDARLAKSVK---NKVFSFDLVS--------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLM--G  201 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~--------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~--~  201 (294)
                      ++.+|||||||+|.++..++   ..++|+|+|+              .++.++.+|+..+++++++||+|++..+++  +
T Consensus        38 ~~~~vLDlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~  117 (227)
T 1ve3_A           38 KRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFE  117 (227)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGGCC
T ss_pred             CCCeEEEEeccCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEEEEEcCchHhCC
Confidence            46799999999999988876   3899999987              468899999999888888999999999954  3


Q ss_pred             C-CHHHHHHHHHHhcCcCcEEEEEeecCC------C----------C----CCCCC--------------------CCHH
Q 022592          202 I-NFPNYLQEAQRVLKPSGWLLIAEVKSR------F----------D----PNTGG--------------------ADPN  240 (294)
Q Consensus       202 ~-~~~~~l~el~r~LkpgG~l~i~e~~~~------~----------~----~~~~~--------------------~~~~  240 (294)
                      . ++..++.++.++|+|||.+++.+....      .          .    +....                    +. .
T Consensus       118 ~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~-~  196 (227)
T 1ve3_A          118 PLELNQVFKEVRRVLKPSGKFIMYFTDLRELLPRLKESLVVGQKYWISKVIPDQEERTVVIEFKSEQDSFRVRFNVWG-K  196 (227)
T ss_dssp             HHHHHHHHHHHHHHEEEEEEEEEEEECHHHHGGGCCC---------CCEEEEETTTTEEEEEC-----CCEEEEECCC-H
T ss_pred             HHHHHHHHHHHHHHcCCCcEEEEEecChHHHHHHHHhhhhcccceeecccccCccccEEEEEeccchhhheeehhhhc-h
Confidence            2 677999999999999999999864310      0          0    00000                    12 4


Q ss_pred             HHHHHHHHCCCeEEEEeccCCeEEEEEEEE
Q 022592          241 KFSKAVCDLGFAPVSKDFSNKMFIMFYFKK  270 (294)
Q Consensus       241 ~~~~~l~~~Gf~~~~~~~~~~~f~~i~~~k  270 (294)
                      ++.++|+++||..+.......+.+++++.+
T Consensus       197 ~~~~~l~~~GF~~v~~~~~~~~~~~i~~~~  226 (227)
T 1ve3_A          197 TGVELLAKLYFTKEAEEKVGNYSYLTVYNP  226 (227)
T ss_dssp             HHHHHHHTTTEEEEEEEEETTTEEEEEEEE
T ss_pred             HHHHHHHHHhhhHHHHHHhCCceeEEeeCC
Confidence            788999999999999776666667777765

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.66  E-value=4.8e-16  Score=136.07  Aligned_cols=123  Identities=12%  Similarity=0.108  Sum_probs=98.7

Q ss_pred             HHHHHhhccCCCCEEEEEcCcccHHHHHhc-----cceEEEeccC----------CCCcEEEccCCCCCCCCCCccEEEE
Q 022592          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS----------NDPSVIACDMSNTPLNSSSVDVAVF  195 (294)
Q Consensus       131 ~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~----------~~~~~~~~d~~~lp~~~~~fD~Vi~  195 (294)
                      .++..+... ++.+|||||||+|.++..++     ..++|+|+|+          .++.++.+|+..++ ++++||+|++
T Consensus        24 ~l~~~~~~~-~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~  101 (259)
T 2p35_A           24 DLLAQVPLE-RVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTNFGKADLATWK-PAQKADLLYA  101 (259)
T ss_dssp             HHHTTCCCS-CCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHSTTSEEEECCTTTCC-CSSCEEEEEE
T ss_pred             HHHHhcCCC-CCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCCCcEEEECChhhcC-ccCCcCEEEE
Confidence            344444333 56799999999999988775     3799999997          47899999999988 7889999999


Q ss_pred             cccccCC-CHHHHHHHHHHhcCcCcEEEEEeecCC----------------CC--------CCCCCCCHHHHHHHHHHCC
Q 022592          196 CLSLMGI-NFPNYLQEAQRVLKPSGWLLIAEVKSR----------------FD--------PNTGGADPNKFSKAVCDLG  250 (294)
Q Consensus       196 ~~~l~~~-~~~~~l~el~r~LkpgG~l~i~e~~~~----------------~~--------~~~~~~~~~~~~~~l~~~G  250 (294)
                      +.+++|. ++..++.++.++|+|||.+++......                +.        .....++.+++..+|+++|
T Consensus       102 ~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG  181 (259)
T 2p35_A          102 NAVFQWVPDHLAVLSQLMDQLESGGVLAVQMPDNLQEPTHIAMHETADGGPWKDAFSGGGLRRKPLPPPSDYFNALSPKS  181 (259)
T ss_dssp             ESCGGGSTTHHHHHHHHGGGEEEEEEEEEEEECCTTSHHHHHHHHHHHHSTTGGGC-------CCCCCHHHHHHHHGGGE
T ss_pred             eCchhhCCCHHHHHHHHHHhcCCCeEEEEEeCCCCCcHHHHHHHHHhcCcchHHHhccccccccCCCCHHHHHHHHHhcC
Confidence            9999996 899999999999999999999864321                10        0223468999999999999


Q ss_pred             CeEEE
Q 022592          251 FAPVS  255 (294)
Q Consensus       251 f~~~~  255 (294)
                      |.+..
T Consensus       182 f~v~~  186 (259)
T 2p35_A          182 SRVDV  186 (259)
T ss_dssp             EEEEE
T ss_pred             CceEE
Confidence            97544

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.65  E-value=7.6e-16  Score=131.89  Aligned_cols=127  Identities=16%  Similarity=0.237  Sum_probs=100.8

Q ss_pred             HHHHHHhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccC--------CCCcEEEccCCC--CCCCCCCccEEEEc
Q 022592          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS--------NDPSVIACDMSN--TPLNSSSVDVAVFC  196 (294)
Q Consensus       130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~--------~~~~~~~~d~~~--lp~~~~~fD~Vi~~  196 (294)
                      ..+++.+.  .++.+|||||||+|.++..++   ..++|+|+++        ....+..+|+..  .++++++||+|++.
T Consensus        23 ~~l~~~~~--~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~  100 (230)
T 3cc8_A           23 PNLLKHIK--KEWKEVLDIGCSSGALGAAIKENGTRVSGIEAFPEAAEQAKEKLDHVVLGDIETMDMPYEEEQFDCVIFG  100 (230)
T ss_dssp             HHHHTTCC--TTCSEEEEETCTTSHHHHHHHTTTCEEEEEESSHHHHHHHHTTSSEEEESCTTTCCCCSCTTCEEEEEEE
T ss_pred             HHHHHHhc--cCCCcEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHhCCcEEEcchhhcCCCCCCCccCEEEEC
Confidence            33455444  366799999999999998887   3899999987        234688899876  67778899999999


Q ss_pred             ccccCC-CHHHHHHHHHHhcCcCcEEEEEeecCC------------CC---------CCCCCCCHHHHHHHHHHCCCeEE
Q 022592          197 LSLMGI-NFPNYLQEAQRVLKPSGWLLIAEVKSR------------FD---------PNTGGADPNKFSKAVCDLGFAPV  254 (294)
Q Consensus       197 ~~l~~~-~~~~~l~el~r~LkpgG~l~i~e~~~~------------~~---------~~~~~~~~~~~~~~l~~~Gf~~~  254 (294)
                      .+++|. ++..++.++.++|+|||.+++......            +.         .....++.+++..+++++||+++
T Consensus       101 ~~l~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~  180 (230)
T 3cc8_A          101 DVLEHLFDPWAVIEKVKPYIKQNGVILASIPNVSHISVLAPLLAGNWTYTEYGLLDKTHIRFFTFNEMLRMFLKAGYSIS  180 (230)
T ss_dssp             SCGGGSSCHHHHHHHTGGGEEEEEEEEEEEECTTSHHHHHHHHTTCCCCBSSSTTBTTCCCCCCHHHHHHHHHHTTEEEE
T ss_pred             ChhhhcCCHHHHHHHHHHHcCCCCEEEEEeCCcchHHHHHHHhcCCceeccCCCCCcceEEEecHHHHHHHHHHcCCeEE
Confidence            999995 889999999999999999999864321            11         11233789999999999999998


Q ss_pred             EEec
Q 022592          255 SKDF  258 (294)
Q Consensus       255 ~~~~  258 (294)
                      ....
T Consensus       181 ~~~~  184 (230)
T 3cc8_A          181 KVDR  184 (230)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            8544

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.65  E-value=9.7e-16  Score=135.11  Aligned_cols=116  Identities=14%  Similarity=0.095  Sum_probs=90.7

Q ss_pred             CCCEEEEEcCcccHHHHHhc---cceEEEeccC---------C-----------------------CCcEEEccCCCCCC
Q 022592          141 PSLVIADFGCGDARLAKSVK---NKVFSFDLVS---------N-----------------------DPSVIACDMSNTPL  185 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~---------~-----------------------~~~~~~~d~~~lp~  185 (294)
                      ++.+|||+|||+|.++..|+   ..|+|+|+|+         .                       ++.++++|+..+++
T Consensus        68 ~~~~vLD~GCG~G~~~~~La~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l~~  147 (252)
T 2gb4_A           68 SGLRVFFPLCGKAIEMKWFADRGHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDLPR  147 (252)
T ss_dssp             CSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTGGG
T ss_pred             CCCeEEEeCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccCCc
Confidence            56799999999999999887   3899999997         1                       25788999999887


Q ss_pred             CC-CCccEEEEcccccCC---CHHHHHHHHHHhcCcCcEEEEEeecCC-C--CCCCCCCCHHHHHHHHHHCCCeEEEEe
Q 022592          186 NS-SSVDVAVFCLSLMGI---NFPNYLQEAQRVLKPSGWLLIAEVKSR-F--DPNTGGADPNKFSKAVCDLGFAPVSKD  257 (294)
Q Consensus       186 ~~-~~fD~Vi~~~~l~~~---~~~~~l~el~r~LkpgG~l~i~e~~~~-~--~~~~~~~~~~~~~~~l~~~Gf~~~~~~  257 (294)
                      ++ ++||+|++..+|++.   +...+++++.++|+|||.++++.+... .  ......++.+++..++.. +|+++...
T Consensus       148 ~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~~~g~~~~~~~~el~~~l~~-~f~v~~~~  225 (252)
T 2gb4_A          148 ANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVLSYDPTKHAGPPFYVPSAELKRLFGT-KCSMQCLE  225 (252)
T ss_dssp             GCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTSCCCSSCCCCHHHHHHHHTT-TEEEEEEE
T ss_pred             ccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEEecCCccCCCCCCCCCHHHHHHHhhC-CeEEEEEe
Confidence            64 899999999999885   356899999999999999976543211 1  111112688999999987 59887643

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.65  E-value=1.3e-15  Score=135.77  Aligned_cols=115  Identities=17%  Similarity=0.236  Sum_probs=94.7

Q ss_pred             CCCEEEEEcCcccHHHHHhc----cceEEEeccC----------------CCCcEEEccCCCCCCCCCCccEEEEccccc
Q 022592          141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLM  200 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~----------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~  200 (294)
                      ++.+|||||||+|.++..++    ..|+|+|+|+                .++.+..+|+.++|   ++||+|++..+++
T Consensus        64 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~fD~v~~~~~l~  140 (287)
T 1kpg_A           64 PGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD---EPVDRIVSIGAFE  140 (287)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC---CCCSEEEEESCGG
T ss_pred             CcCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC---CCeeEEEEeCchh
Confidence            66799999999999988776    3899999986                26788899998766   7899999999999


Q ss_pred             CC---CHHHHHHHHHHhcCcCcEEEEEeecCCC--------------------------CCCCCCCCHHHHHHHHHHCCC
Q 022592          201 GI---NFPNYLQEAQRVLKPSGWLLIAEVKSRF--------------------------DPNTGGADPNKFSKAVCDLGF  251 (294)
Q Consensus       201 ~~---~~~~~l~el~r~LkpgG~l~i~e~~~~~--------------------------~~~~~~~~~~~~~~~l~~~Gf  251 (294)
                      |.   ++..+++++.++|+|||.+++.++....                          .+....++.+++..+++++||
T Consensus       141 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGf  220 (287)
T 1kpg_A          141 HFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIPMVQECASANGF  220 (287)
T ss_dssp             GTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCCHHHHHHHHHTTTC
T ss_pred             hcChHHHHHHHHHHHHhcCCCCEEEEEEecCCCccccccccccccccccchhhhHHheeCCCCCCCCHHHHHHHHHhCCc
Confidence            95   6789999999999999999998754311                          111223589999999999999


Q ss_pred             eEEEEec
Q 022592          252 APVSKDF  258 (294)
Q Consensus       252 ~~~~~~~  258 (294)
                      +++....
T Consensus       221 ~~~~~~~  227 (287)
T 1kpg_A          221 TVTRVQS  227 (287)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEe
Confidence            9988643

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.64  E-value=7.1e-16  Score=137.94  Aligned_cols=128  Identities=16%  Similarity=0.259  Sum_probs=93.3

Q ss_pred             HHHHHHhhcc-CCCCEEEEEcCcccHHHHHhc----cceEEEeccCCC--------------------------------
Q 022592          130 NIIVKWLKDH-SPSLVIADFGCGDARLAKSVK----NKVFSFDLVSND--------------------------------  172 (294)
Q Consensus       130 ~~~~~~l~~~-~~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~~~--------------------------------  172 (294)
                      ..+.+.+... .++.+|||||||+|.++..++    ..|+|+|+|+..                                
T Consensus        59 ~~l~~~l~~~~~~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~  138 (289)
T 2g72_A           59 RCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGE  138 (289)
T ss_dssp             HHHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCC
T ss_pred             HHHHHHhCCCCCCCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCccc
Confidence            3455555432 256799999999999554433    389999999721                                


Q ss_pred             -------------CcEEEccCCC-CCC-----CCCCccEEEEcccccC----C-CHHHHHHHHHHhcCcCcEEEEEeecC
Q 022592          173 -------------PSVIACDMSN-TPL-----NSSSVDVAVFCLSLMG----I-NFPNYLQEAQRVLKPSGWLLIAEVKS  228 (294)
Q Consensus       173 -------------~~~~~~d~~~-lp~-----~~~~fD~Vi~~~~l~~----~-~~~~~l~el~r~LkpgG~l~i~e~~~  228 (294)
                                   +.++.+|+.. +|+     ++++||+|+++.+|+|    . ++..+++++.++|||||.|++.+...
T Consensus       139 ~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~  218 (289)
T 2g72_A          139 CWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALE  218 (289)
T ss_dssp             CHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEES
T ss_pred             chhhhHHHHHhhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecC
Confidence                         1245558877 664     3467999999999998    3 57899999999999999999975332


Q ss_pred             C-CC---C---CCCCCCHHHHHHHHHHCCCeEEEEe
Q 022592          229 R-FD---P---NTGGADPNKFSKAVCDLGFAPVSKD  257 (294)
Q Consensus       229 ~-~~---~---~~~~~~~~~~~~~l~~~Gf~~~~~~  257 (294)
                      . +.   .   ....++.+++..+|+++||+++...
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~  254 (289)
T 2g72_A          219 ESWYLAGEARLTVVPVSEEEVREALVRSGYKVRDLR  254 (289)
T ss_dssp             CCEEEETTEEEECCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred             cceEEcCCeeeeeccCCHHHHHHHHHHcCCeEEEee
Confidence            1 10   0   1234689999999999999988743

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.64  E-value=1.2e-15  Score=137.27  Aligned_cols=124  Identities=13%  Similarity=0.127  Sum_probs=98.6

Q ss_pred             HHHHhhccCCCCEEEEEcCcccHHHHHhc----cceEEEeccC----------------CCCcEEEccCCCCCCCCCCcc
Q 022592          132 IVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSVD  191 (294)
Q Consensus       132 ~~~~l~~~~~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~----------------~~~~~~~~d~~~lp~~~~~fD  191 (294)
                      ++..+.. .++.+|||||||+|.++..++    ..|+|+|+|+                .++.++.+|+.++   +++||
T Consensus        64 ~~~~~~~-~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~fD  139 (302)
T 3hem_A           64 ALDKLNL-EPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF---DEPVD  139 (302)
T ss_dssp             HHHTTCC-CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC---CCCCS
T ss_pred             HHHHcCC-CCcCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc---CCCcc
Confidence            4444433 367799999999999988876    3799999997                2578999999876   68899


Q ss_pred             EEEEcccccCC-CH---------HHHHHHHHHhcCcCcEEEEEeecCCC--------------------------CCCCC
Q 022592          192 VAVFCLSLMGI-NF---------PNYLQEAQRVLKPSGWLLIAEVKSRF--------------------------DPNTG  235 (294)
Q Consensus       192 ~Vi~~~~l~~~-~~---------~~~l~el~r~LkpgG~l~i~e~~~~~--------------------------~~~~~  235 (294)
                      +|++..+++|. ++         ..+++++.++|+|||.+++.++....                          .+...
T Consensus       140 ~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  219 (302)
T 3hem_A          140 RIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPGGR  219 (302)
T ss_dssp             EEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCTTCC
T ss_pred             EEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEeccCccchhhccccccccccchHHHHHHhcCCCCC
Confidence            99999999995 44         69999999999999999998764321                          12223


Q ss_pred             CCCHHHHHHHHHHCCCeEEEEecc
Q 022592          236 GADPNKFSKAVCDLGFAPVSKDFS  259 (294)
Q Consensus       236 ~~~~~~~~~~l~~~Gf~~~~~~~~  259 (294)
                      ..+.+++..+++++||+++.....
T Consensus       220 ~~s~~~~~~~l~~aGf~~~~~~~~  243 (302)
T 3hem_A          220 LPRISQVDYYSSNAGWKVERYHRI  243 (302)
T ss_dssp             CCCHHHHHHHHHHHTCEEEEEEEC
T ss_pred             CCCHHHHHHHHHhCCcEEEEEEeC
Confidence            468899999999999999886543

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.64  E-value=1.7e-15  Score=127.16  Aligned_cols=125  Identities=19%  Similarity=0.266  Sum_probs=98.9

Q ss_pred             HHHHHHhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccC---------------CCCcEEEccCCCCCCCCCCcc
Q 022592          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVD  191 (294)
Q Consensus       130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~---------------~~~~~~~~d~~~lp~~~~~fD  191 (294)
                      ..+++.+... ++.+|||||||+|.++..++   ..++|+|+|+               .++.++.+|+..+++ +++||
T Consensus        22 ~~l~~~~~~~-~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~~D   99 (199)
T 2xvm_A           22 SEVLEAVKVV-KPGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF-DRQYD   99 (199)
T ss_dssp             HHHHHHTTTS-CSCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCC-CCCEE
T ss_pred             HHHHHHhhcc-CCCeEEEEcCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCC-CCCce
Confidence            3455666554 56799999999999998887   3899999987               267899999999888 78999


Q ss_pred             EEEEcccccCC---CHHHHHHHHHHhcCcCcEEEEEeecCCCC-C----CCCCCCHHHHHHHHHHCCCeEEEEec
Q 022592          192 VAVFCLSLMGI---NFPNYLQEAQRVLKPSGWLLIAEVKSRFD-P----NTGGADPNKFSKAVCDLGFAPVSKDF  258 (294)
Q Consensus       192 ~Vi~~~~l~~~---~~~~~l~el~r~LkpgG~l~i~e~~~~~~-~----~~~~~~~~~~~~~l~~~Gf~~~~~~~  258 (294)
                      +|++..+++|.   ++..++.++.++|+|||.+++.+...... +    ....++.+++.++++.  |+++....
T Consensus       100 ~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--f~~~~~~~  172 (199)
T 2xvm_A          100 FILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYEG--WERVKYNE  172 (199)
T ss_dssp             EEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCCSCCSCCBCTTHHHHHTTT--SEEEEEEC
T ss_pred             EEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCCCCCCCCccCHHHHHHHhcC--CeEEEecc
Confidence            99999999985   57899999999999999988876443211 1    1123588899999986  99988544

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.64  E-value=1.6e-15  Score=131.42  Aligned_cols=83  Identities=28%  Similarity=0.363  Sum_probs=71.8

Q ss_pred             CCCEEEEEcCcccHHHHHhc--cceEEEeccC--------------CCCcEEEccCCCCCCCCCCccEEEEcc-cccCC-
Q 022592          141 PSLVIADFGCGDARLAKSVK--NKVFSFDLVS--------------NDPSVIACDMSNTPLNSSSVDVAVFCL-SLMGI-  202 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~--~~v~gvD~s~--------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~-~l~~~-  202 (294)
                      ++.+|||||||+|.++..++  ..|+|+|+|+              .++.++.+|+..++++ ++||+|++.. +++|. 
T Consensus        33 ~~~~vLdiG~G~G~~~~~l~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~~~~~~~  111 (243)
T 3d2l_A           33 PGKRIADIGCGTGTATLLLADHYEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELP-EPVDAITILCDSLNYLQ  111 (243)
T ss_dssp             TTCEEEEESCTTCHHHHHHTTTSEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCS-SCEEEEEECTTGGGGCC
T ss_pred             CCCeEEEecCCCCHHHHHHhhCCeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCC-CCcCEEEEeCCchhhcC
Confidence            55799999999999998887  4799999987              3678999999988876 7899999986 88885 


Q ss_pred             ---CHHHHHHHHHHhcCcCcEEEEE
Q 022592          203 ---NFPNYLQEAQRVLKPSGWLLIA  224 (294)
Q Consensus       203 ---~~~~~l~el~r~LkpgG~l~i~  224 (294)
                         +...+++++.++|+|||.+++.
T Consensus       112 ~~~~~~~~l~~~~~~L~pgG~l~~~  136 (243)
T 3d2l_A          112 TEADVKQTFDSAARLLTDGGKLLFD  136 (243)
T ss_dssp             SHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CHHHHHHHHHHHHHhcCCCeEEEEE
Confidence               4568899999999999999984

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.64  E-value=2e-15  Score=129.17  Aligned_cols=126  Identities=14%  Similarity=0.163  Sum_probs=98.2

Q ss_pred             HHHHHHhhccCCCCEEEEEcCcccHHHHHhc-----cceEEEeccC----------C----------CCcEEEccCCCCC
Q 022592          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS----------N----------DPSVIACDMSNTP  184 (294)
Q Consensus       130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~----------~----------~~~~~~~d~~~lp  184 (294)
                      +.+++.+... ++.+|||||||+|.++..++     ..|+|+|+|+          .          ++.++.+|+...+
T Consensus        19 ~~l~~~l~~~-~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~   97 (217)
T 3jwh_A           19 NGVVAALKQS-NARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQD   97 (217)
T ss_dssp             HHHHHHHHHT-TCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCC
T ss_pred             HHHHHHHHhc-CCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCccccc
Confidence            3455555544 56799999999999998886     3899999997          1          6889999998888


Q ss_pred             CCCCCccEEEEcccccCCC-H--HHHHHHHHHhcCcCcEEEEEeecCC---C----------CCCCCCCCHHHHH----H
Q 022592          185 LNSSSVDVAVFCLSLMGIN-F--PNYLQEAQRVLKPSGWLLIAEVKSR---F----------DPNTGGADPNKFS----K  244 (294)
Q Consensus       185 ~~~~~fD~Vi~~~~l~~~~-~--~~~l~el~r~LkpgG~l~i~e~~~~---~----------~~~~~~~~~~~~~----~  244 (294)
                      .+.++||+|++..+++|.+ +  ..+++++.++|+|||.++++.....   +          ......++.+++.    .
T Consensus        98 ~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  177 (217)
T 3jwh_A           98 KRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPNIEYNVKFANLPAGKLRHKDHRFEWTRSQFQNWANK  177 (217)
T ss_dssp             GGGCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBHHHHHHTC-----------CCSCBCHHHHHHHHHH
T ss_pred             ccCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccCcccchhhcccccccccccccccccCHHHHHHHHHH
Confidence            7778999999999999963 2  6899999999999997777643211   1          1112236888888    8


Q ss_pred             HHHHCCCeEEEE
Q 022592          245 AVCDLGFAPVSK  256 (294)
Q Consensus       245 ~l~~~Gf~~~~~  256 (294)
                      +++++||+++..
T Consensus       178 ~~~~~Gf~v~~~  189 (217)
T 3jwh_A          178 ITERFAYNVQFQ  189 (217)
T ss_dssp             HHHHSSEEEEEC
T ss_pred             HHHHcCceEEEE
Confidence            999999998774

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.64  E-value=3.9e-16  Score=140.33  Aligned_cols=139  Identities=15%  Similarity=0.174  Sum_probs=103.8

Q ss_pred             HHHHHHHhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccC------------------CCCcEEEccCCCCCCCC
Q 022592          129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS------------------NDPSVIACDMSNTPLNS  187 (294)
Q Consensus       129 ~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~------------------~~~~~~~~d~~~lp~~~  187 (294)
                      +..++..+..  ++.+|||||||+|.++..++   ..|+|+|+|+                  .++.++++|+..+++ +
T Consensus        72 ~~~~~~~~~~--~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~-~  148 (299)
T 3g2m_A           72 AREFATRTGP--VSGPVLELAAGMGRLTFPFLDLGWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL-D  148 (299)
T ss_dssp             HHHHHHHHCC--CCSCEEEETCTTTTTHHHHHTTTCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC-S
T ss_pred             HHHHHHhhCC--CCCcEEEEeccCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc-C
Confidence            3455666543  33489999999999999887   3899999997                  247899999999987 6


Q ss_pred             CCccEEEEc-ccccCCC---HHHHHHHHHHhcCcCcEEEEEeecCCCC-----C--------------------------
Q 022592          188 SSVDVAVFC-LSLMGIN---FPNYLQEAQRVLKPSGWLLIAEVKSRFD-----P--------------------------  232 (294)
Q Consensus       188 ~~fD~Vi~~-~~l~~~~---~~~~l~el~r~LkpgG~l~i~e~~~~~~-----~--------------------------  232 (294)
                      ++||+|++. .++++.+   ...+++++.++|+|||.|++..+.....     .                          
T Consensus       149 ~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  228 (299)
T 3g2m_A          149 KRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSEAAESEPLERKQELPGRSGRRYVLHVRHLPAEEIQ  228 (299)
T ss_dssp             CCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCHHHHSCCCCC-------------CCEEEEEEEEEE
T ss_pred             CCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCccccccchhccceeecCCCcEEEEEEEEeccccEE
Confidence            889998865 5566665   5799999999999999999976443210     0                          


Q ss_pred             ----------C---------CCCCCHHHHHHHHHHCCCeEEEEecc------CCeEEEEEEEE
Q 022592          233 ----------N---------TGGADPNKFSKAVCDLGFAPVSKDFS------NKMFIMFYFKK  270 (294)
Q Consensus       233 ----------~---------~~~~~~~~~~~~l~~~Gf~~~~~~~~------~~~f~~i~~~k  270 (294)
                                .         ...++.+++..+|+++||+++.....      ...+.+++...
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~g~~~~~~~lvea~~  291 (299)
T 3g2m_A          229 EITIHPADETTDPFVVCTHRRRLLAPDQVVRELVRSGFDVIAQTPFASGGAGRKDMVLVEAVM  291 (299)
T ss_dssp             EEEEEESCC--CCCCEEEEEEEEECHHHHHHHHHHTTCEEEEEEEECTTSSSSCCEEEEEEEC
T ss_pred             EEEEEeccCCCCcEEEEEEEEEEeCHHHHHHHHHHCCCEEEEEEecCCCCCCccceeeeehhh
Confidence                      0         00259999999999999999985432      23455665544

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=99.64  E-value=7e-15  Score=136.23  Aligned_cols=138  Identities=16%  Similarity=0.196  Sum_probs=107.1

Q ss_pred             HHHHHHhhccCCCCEEEEEcCcccHHHHHhc-----cceEEEeccC--------CCCcEEEccCCCCCCCCCCccEEEEc
Q 022592          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS--------NDPSVIACDMSNTPLNSSSVDVAVFC  196 (294)
Q Consensus       130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~--------~~~~~~~~d~~~lp~~~~~fD~Vi~~  196 (294)
                      ..++..+....+..+|||||||+|.++..++     ..++++|+..        .++.++.+|+.. |++.+  |+|++.
T Consensus       190 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~-~~p~~--D~v~~~  266 (364)
T 3p9c_A          190 KKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQFPGVTHVGGDMFK-EVPSG--DTILMK  266 (364)
T ss_dssp             HHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTT-CCCCC--SEEEEE
T ss_pred             HHHHHhcccccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecCHHHHHhhhhcCCeEEEeCCcCC-CCCCC--CEEEeh
Confidence            4455555423356799999999999998886     2689999843        478899999987 77754  999999


Q ss_pred             ccccCCC---HHHHHHHHHHhcCcCcEEEEEeecCCCC---------------------CCCCCCCHHHHHHHHHHCCCe
Q 022592          197 LSLMGIN---FPNYLQEAQRVLKPSGWLLIAEVKSRFD---------------------PNTGGADPNKFSKAVCDLGFA  252 (294)
Q Consensus       197 ~~l~~~~---~~~~l~el~r~LkpgG~l~i~e~~~~~~---------------------~~~~~~~~~~~~~~l~~~Gf~  252 (294)
                      .+||+.+   ...+|++++++|+|||+|+|.|......                     .....++.+++..+|+++||+
T Consensus       267 ~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~AGF~  346 (364)
T 3p9c_A          267 WILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGGRERYEREFQALARGAGFT  346 (364)
T ss_dssp             SCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCSSCCCCBHHHHHHHHHHTTCC
T ss_pred             HHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhcccCCccCCHHHHHHHHHHCCCc
Confidence            9999753   4588999999999999999987542111                     122236889999999999999


Q ss_pred             EEEEeccCCeEEEEEEEE
Q 022592          253 PVSKDFSNKMFIMFYFKK  270 (294)
Q Consensus       253 ~~~~~~~~~~f~~i~~~k  270 (294)
                      ++........+.++++.|
T Consensus       347 ~v~~~~~~~~~~vie~~k  364 (364)
T 3p9c_A          347 GVKSTYIYANAWAIEFTK  364 (364)
T ss_dssp             EEEEEEEETTEEEEEEEC
T ss_pred             eEEEEEcCCceEEEEEeC
Confidence            999777667777887754

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.63  E-value=5.6e-16  Score=131.80  Aligned_cols=108  Identities=16%  Similarity=0.230  Sum_probs=92.6

Q ss_pred             CCCEEEEEcCcccHHHHHhcc-ceEEEeccC----------CCCcEEEccCCCCCCCCCCccEEEEcccccCC-CHHHHH
Q 022592          141 PSLVIADFGCGDARLAKSVKN-KVFSFDLVS----------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGI-NFPNYL  208 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~~-~v~gvD~s~----------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~-~~~~~l  208 (294)
                      ++.+|||||||+|.++..+.. .++|+|+|+          .++.++.+|+..+|+++++||+|++..+++|. ++..++
T Consensus        36 ~~~~vLdiG~G~G~~~~~l~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l  115 (211)
T 2gs9_A           36 PGESLLEVGAGTGYWLRRLPYPQKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLLFTTLEFVEDVERVL  115 (211)
T ss_dssp             CCSEEEEETCTTCHHHHHCCCSEEEEECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEEEESCTTTCSCHHHHH
T ss_pred             CCCeEEEECCCCCHhHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEEEcChhhhcCCHHHHH
Confidence            567999999999999998865 899999997          37889999999999988999999999999995 899999


Q ss_pred             HHHHHhcCcCcEEEEEeecCCCC----------------CCCCCCCHHHHHHHHHHCC
Q 022592          209 QEAQRVLKPSGWLLIAEVKSRFD----------------PNTGGADPNKFSKAVCDLG  250 (294)
Q Consensus       209 ~el~r~LkpgG~l~i~e~~~~~~----------------~~~~~~~~~~~~~~l~~~G  250 (294)
                      +++.++|+|||.+++.++.....                .....++.+++..+|+  |
T Consensus       116 ~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~--G  171 (211)
T 2gs9_A          116 LEARRVLRPGGALVVGVLEALSPWAALYRRLGEKGVLPWAQARFLAREDLKALLG--P  171 (211)
T ss_dssp             HHHHHHEEEEEEEEEEEECTTSHHHHHHHHHHHTTCTTGGGCCCCCHHHHHHHHC--S
T ss_pred             HHHHHHcCCCCEEEEEecCCcCcHHHHHHHHhhccCccccccccCCHHHHHHHhc--C
Confidence            99999999999999987654210                1233479999999998  7

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=99.63  E-value=9.2e-15  Score=135.60  Aligned_cols=128  Identities=17%  Similarity=0.174  Sum_probs=101.8

Q ss_pred             CCCEEEEEcCcccHHHHHhcc-----ceEEEeccC--------CCCcEEEccCCCCCCCCCCccEEEEcccccCCC---H
Q 022592          141 PSLVIADFGCGDARLAKSVKN-----KVFSFDLVS--------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGIN---F  204 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~~-----~v~gvD~s~--------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~~---~  204 (294)
                      +..+|||||||+|.++..++.     +++++|+..        .++.++.+|+.+ |++.+  |+|++..+||+.+   .
T Consensus       203 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~-~~p~~--D~v~~~~vlh~~~~~~~  279 (368)
T 3reo_A          203 GLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPAFSGVEHLGGDMFD-GVPKG--DAIFIKWICHDWSDEHC  279 (368)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTT-CCCCC--SEEEEESCGGGBCHHHH
T ss_pred             CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEehHHHHHhhhhcCCCEEEecCCCC-CCCCC--CEEEEechhhcCCHHHH
Confidence            457999999999999988862     689999843        478899999987 67654  9999999999753   3


Q ss_pred             HHHHHHHHHhcCcCcEEEEEeecCCCC---------------------CCCCCCCHHHHHHHHHHCCCeEEEEeccCCeE
Q 022592          205 PNYLQEAQRVLKPSGWLLIAEVKSRFD---------------------PNTGGADPNKFSKAVCDLGFAPVSKDFSNKMF  263 (294)
Q Consensus       205 ~~~l~el~r~LkpgG~l~i~e~~~~~~---------------------~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~f  263 (294)
                      ..+|++++++|+|||+|+|.|+.....                     .....++.+++..+|+++||+++.+......+
T Consensus       280 ~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~rt~~e~~~ll~~AGF~~v~~~~~~~~~  359 (368)
T 3reo_A          280 LKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKERTEKEFQALAMASGFRGFKVASCAFNT  359 (368)
T ss_dssp             HHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSSBCCCCCHHHHHHHHHHTTCCEEEEEEEETTE
T ss_pred             HHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcCCCccCCHHHHHHHHHHCCCeeeEEEEeCCCc
Confidence            478999999999999999988543211                     11223688999999999999999977666677


Q ss_pred             EEEEEEEC
Q 022592          264 IMFYFKKK  271 (294)
Q Consensus       264 ~~i~~~k~  271 (294)
                      .++++.|.
T Consensus       360 ~vie~~k~  367 (368)
T 3reo_A          360 YVMEFLKT  367 (368)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEEeC
Confidence            78887664

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.63  E-value=1.6e-15  Score=128.48  Aligned_cols=128  Identities=14%  Similarity=0.202  Sum_probs=100.7

Q ss_pred             HHHHHHHHhhccCCCCEEEEEcCcccHHH-HHhc---cceEEEeccC--------------CCCcEEEccCCCCCCCCCC
Q 022592          128 PVNIIVKWLKDHSPSLVIADFGCGDARLA-KSVK---NKVFSFDLVS--------------NDPSVIACDMSNTPLNSSS  189 (294)
Q Consensus       128 ~~~~~~~~l~~~~~~~~VLDiGcG~G~~~-~~l~---~~v~gvD~s~--------------~~~~~~~~d~~~lp~~~~~  189 (294)
                      .+..++..+....++.+|||+|||+|.++ ..++   ..|+|+|+|+              .++.++.+|+..+++++++
T Consensus        10 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~   89 (209)
T 2p8j_A           10 QLYRFLKYCNESNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDES   89 (209)
T ss_dssp             HHHHHHHHHHHSSSCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTC
T ss_pred             hHHHHHHHHhccCCCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCc
Confidence            34556666666556789999999999873 3333   4899999987              3688999999999988899


Q ss_pred             ccEEEEcccccCC---CHHHHHHHHHHhcCcCcEEEEEeecCCCCCC-----------------C----CCCCHHHHHHH
Q 022592          190 VDVAVFCLSLMGI---NFPNYLQEAQRVLKPSGWLLIAEVKSRFDPN-----------------T----GGADPNKFSKA  245 (294)
Q Consensus       190 fD~Vi~~~~l~~~---~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~-----------------~----~~~~~~~~~~~  245 (294)
                      ||+|++..+++|.   ++..+++++.++|+|||.+++.++.......                 .    ..++.+++..+
T Consensus        90 fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  169 (209)
T 2p8j_A           90 MSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFLTTKDERYNKGEKIGEGEFLQLERGEKVIHSYVSLEEADKY  169 (209)
T ss_dssp             EEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEETTSTTTTCSEEEETTEEEECC-CCCEEEEEECHHHHHHT
T ss_pred             eeEEEEcChHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEecccchhccchhhhccccceeccCCCceeEEecCHHHHHHH
Confidence            9999999999986   5679999999999999999998764321110                 0    12588899999


Q ss_pred             HHHCCCeEEE
Q 022592          246 VCDLGFAPVS  255 (294)
Q Consensus       246 l~~~Gf~~~~  255 (294)
                      +..+||....
T Consensus       170 ~~~~g~~~~~  179 (209)
T 2p8j_A          170 FKDMKVLFKE  179 (209)
T ss_dssp             TTTSEEEEEE
T ss_pred             HhhcCceeee
Confidence            9999987665

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.63  E-value=1.3e-14  Score=134.62  Aligned_cols=138  Identities=12%  Similarity=0.125  Sum_probs=106.6

Q ss_pred             HHHHHHhhccCCCCEEEEEcCcccHHHHHhcc-----ceEEEeccC---------------CCCcEEEccCCCCCCCCCC
Q 022592          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVKN-----KVFSFDLVS---------------NDPSVIACDMSNTPLNSSS  189 (294)
Q Consensus       130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~~-----~v~gvD~s~---------------~~~~~~~~d~~~lp~~~~~  189 (294)
                      ..++..+... +..+|||||||+|.++..++.     .++++|+..               .++.++.+|+. .+++. .
T Consensus       192 ~~l~~~~~~~-~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~l~~~v~~~~~d~~-~~~p~-~  268 (369)
T 3gwz_A          192 GQVAAAYDFS-GAATAVDIGGGRGSLMAAVLDAFPGLRGTLLERPPVAEEARELLTGRGLADRCEILPGDFF-ETIPD-G  268 (369)
T ss_dssp             HHHHHHSCCT-TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTT-TCCCS-S
T ss_pred             HHHHHhCCCc-cCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcCHHHHHHHHHhhhhcCcCCceEEeccCCC-CCCCC-C
Confidence            3444444322 457999999999999988862     789999822               35889999998 56665 7


Q ss_pred             ccEEEEcccccCCCHH---HHHHHHHHhcCcCcEEEEEeecCCCCC---------------CCCCCCHHHHHHHHHHCCC
Q 022592          190 VDVAVFCLSLMGINFP---NYLQEAQRVLKPSGWLLIAEVKSRFDP---------------NTGGADPNKFSKAVCDLGF  251 (294)
Q Consensus       190 fD~Vi~~~~l~~~~~~---~~l~el~r~LkpgG~l~i~e~~~~~~~---------------~~~~~~~~~~~~~l~~~Gf  251 (294)
                      ||+|++..+||+.+..   .+++++.++|+|||.|+|.+.......               ....++.+++..+++++||
T Consensus       269 ~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf  348 (369)
T 3gwz_A          269 ADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDERPAASTLFVDLLLLVLVGGAERSESEFAALLEKSGL  348 (369)
T ss_dssp             CSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHHHHHHHHHHHHHHSCCCBCHHHHHHHHHTTTE
T ss_pred             ceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhHhhHHHHhhcCCccCCHHHHHHHHHHCCC
Confidence            9999999999986433   799999999999999999875432211               1123688999999999999


Q ss_pred             eEEEEec-cCCeEEEEEEEE
Q 022592          252 APVSKDF-SNKMFIMFYFKK  270 (294)
Q Consensus       252 ~~~~~~~-~~~~f~~i~~~k  270 (294)
                      +++.+.. ....+.++++++
T Consensus       349 ~~~~~~~~~~~~~svie~~~  368 (369)
T 3gwz_A          349 RVERSLPCGAGPVRIVEIRR  368 (369)
T ss_dssp             EEEEEEECSSSSEEEEEEEE
T ss_pred             eEEEEEECCCCCcEEEEEEe
Confidence            9999766 567788888875

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.62  E-value=2.6e-14  Score=130.29  Aligned_cols=138  Identities=14%  Similarity=0.120  Sum_probs=105.7

Q ss_pred             HHHHHHHhhccCCCCEEEEEcCcccHHHHHhc-----cceEEEeccC----------------CCCcEEEccCCCCCCCC
Q 022592          129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS----------------NDPSVIACDMSNTPLNS  187 (294)
Q Consensus       129 ~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~----------------~~~~~~~~d~~~lp~~~  187 (294)
                      ...++..+... + .+|||||||+|.++..++     ..++++|+ +                .++.++.+|+.. +++ 
T Consensus       157 ~~~~~~~~~~~-~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~-  231 (334)
T 2ip2_A          157 FHEIPRLLDFR-G-RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-EVP-  231 (334)
T ss_dssp             HHHHHHHSCCT-T-CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-CCC-
T ss_pred             HHHHHHhCCCC-C-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-CCC-
Confidence            34455555333 3 799999999999988886     26999999 6                257889999977 555 


Q ss_pred             CCccEEEEcccccCC-CH--HHHHHHHHHhcCcCcEEEEEeecCCCCC----------------CCCCCCHHHHHHHHHH
Q 022592          188 SSVDVAVFCLSLMGI-NF--PNYLQEAQRVLKPSGWLLIAEVKSRFDP----------------NTGGADPNKFSKAVCD  248 (294)
Q Consensus       188 ~~fD~Vi~~~~l~~~-~~--~~~l~el~r~LkpgG~l~i~e~~~~~~~----------------~~~~~~~~~~~~~l~~  248 (294)
                      ++||+|++..++|+. +.  ..+++++.++|+|||.+++.+.......                ....++.+++.+++++
T Consensus       232 ~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~  311 (334)
T 2ip2_A          232 SNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTISASEPSPMSVLWDVHLFMACAGRHRTTEEVVDLLGR  311 (334)
T ss_dssp             SSCSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSSCCHHHHHHHHHHHHHHSCCCCBHHHHHHHHHH
T ss_pred             CCCCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhHHhhhHhHhhCCCcCCCHHHHHHHHHH
Confidence            679999999999975 33  3899999999999999999975421110                1123588999999999


Q ss_pred             CCCeEEEEeccCCeEEEEEEEEC
Q 022592          249 LGFAPVSKDFSNKMFIMFYFKKK  271 (294)
Q Consensus       249 ~Gf~~~~~~~~~~~f~~i~~~k~  271 (294)
                      +||+++........+.+++++|.
T Consensus       312 aGf~~~~~~~~~~~~~~i~~~~~  334 (334)
T 2ip2_A          312 GGFAVERIVDLPMETRMIVAARA  334 (334)
T ss_dssp             TTEEEEEEEEETTTEEEEEEEEC
T ss_pred             CCCceeEEEECCCCCEEEEEEeC
Confidence            99999886655566788888763

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.62  E-value=5.9e-15  Score=134.37  Aligned_cols=140  Identities=14%  Similarity=0.194  Sum_probs=106.6

Q ss_pred             HHHHHHHhhc-cCCCCEEEEEcCcccHHHHHhc-----cceEEEeccC---------------CCCcEEEccCCCCCCCC
Q 022592          129 VNIIVKWLKD-HSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSNTPLNS  187 (294)
Q Consensus       129 ~~~~~~~l~~-~~~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~---------------~~~~~~~~d~~~lp~~~  187 (294)
                      ...++..+.. ..+..+|||||||+|.++..++     .+++++|++.               .++.++.+|+...+++.
T Consensus       152 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~  231 (335)
T 2r3s_A          152 AQLIAQLVNENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGVASRYHTIAGSAFEVDYGN  231 (335)
T ss_dssp             HHHHHHHHTC--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHHTCGGGEEEEESCTTTSCCCS
T ss_pred             HHHHHHhcccccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCcceEEEecccccCCCCC
Confidence            3445555543 0256799999999999988876     2799999983               24789999998877765


Q ss_pred             CCccEEEEcccccCCC---HHHHHHHHHHhcCcCcEEEEEeecCCCC------------------CCCCCCCHHHHHHHH
Q 022592          188 SSVDVAVFCLSLMGIN---FPNYLQEAQRVLKPSGWLLIAEVKSRFD------------------PNTGGADPNKFSKAV  246 (294)
Q Consensus       188 ~~fD~Vi~~~~l~~~~---~~~~l~el~r~LkpgG~l~i~e~~~~~~------------------~~~~~~~~~~~~~~l  246 (294)
                      + ||+|++..++++.+   ...+++++.++|+|||.+++.++.....                  +....++.+++.+++
T Consensus       232 ~-~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ll  310 (335)
T 2r3s_A          232 D-YDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPDAAAFSLVMLATTPNGDAYTFAEYESMF  310 (335)
T ss_dssp             C-EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCSHHHHHHHHHHHHHSSSCCCCCHHHHHHHH
T ss_pred             C-CcEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCchHHHHHHHHHHeeCCCCCcCCHHHHHHHH
Confidence            5 99999999999863   3589999999999999999988653221                  123347899999999


Q ss_pred             HHCCCeEEEEeccCCeEEEEEEE
Q 022592          247 CDLGFAPVSKDFSNKMFIMFYFK  269 (294)
Q Consensus       247 ~~~Gf~~~~~~~~~~~f~~i~~~  269 (294)
                      +++||+++........+.+++.+
T Consensus       311 ~~aGf~~~~~~~~~~~~~~i~~~  333 (335)
T 2r3s_A          311 SNAGFSHSQLHSLPTTQQQVIVA  333 (335)
T ss_dssp             HHTTCSEEEEECCTTSSSEEEEE
T ss_pred             HHCCCCeeeEEECCCCceeEEEe
Confidence            99999999866554444555443

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.62  E-value=1.9e-15  Score=135.01  Aligned_cols=95  Identities=16%  Similarity=0.221  Sum_probs=78.8

Q ss_pred             HHHHHHhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccC-------------------CCCcEEEccCCCCC---
Q 022592          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS-------------------NDPSVIACDMSNTP---  184 (294)
Q Consensus       130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~-------------------~~~~~~~~d~~~lp---  184 (294)
                      ..+...+... ++.+|||||||+|.++..++   ..|+|+|+|+                   .++.+..+|+..++   
T Consensus        47 ~~l~~~l~~~-~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  125 (293)
T 3thr_A           47 AWLLGLLRQH-GCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDV  125 (293)
T ss_dssp             HHHHHHHHHT-TCCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHS
T ss_pred             HHHHHHhccc-CCCEEEEecCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCcccc
Confidence            3344555444 56799999999999998887   3899999997                   24557888988887   


Q ss_pred             CCCCCccEEEEc-ccccCC-C-------HHHHHHHHHHhcCcCcEEEEEe
Q 022592          185 LNSSSVDVAVFC-LSLMGI-N-------FPNYLQEAQRVLKPSGWLLIAE  225 (294)
Q Consensus       185 ~~~~~fD~Vi~~-~~l~~~-~-------~~~~l~el~r~LkpgG~l~i~e  225 (294)
                      +++++||+|++. .+++|. +       +..+++++.++|+|||+|++..
T Consensus       126 ~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  175 (293)
T 3thr_A          126 PAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH  175 (293)
T ss_dssp             CCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence            788999999998 899884 7       8899999999999999999874

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.62  E-value=1.4e-15  Score=133.50  Aligned_cols=132  Identities=16%  Similarity=0.240  Sum_probs=100.7

Q ss_pred             CCCEEEEEcCcccHHHHHhc----cceEEEeccCC------------C--------------------------------
Q 022592          141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVSN------------D--------------------------------  172 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~~------------~--------------------------------  172 (294)
                      ++.+|||||||+|.++..++    ..|+|+|+|+.            .                                
T Consensus        56 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  135 (265)
T 2i62_A           56 KGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRRA  135 (265)
T ss_dssp             CEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhhh
Confidence            55689999999999988776    27999999971            1                                


Q ss_pred             C-cEEEccCCCCC-CCC---CCccEEEEccccc----CC-CHHHHHHHHHHhcCcCcEEEEEeecCCCC-------CCCC
Q 022592          173 P-SVIACDMSNTP-LNS---SSVDVAVFCLSLM----GI-NFPNYLQEAQRVLKPSGWLLIAEVKSRFD-------PNTG  235 (294)
Q Consensus       173 ~-~~~~~d~~~lp-~~~---~~fD~Vi~~~~l~----~~-~~~~~l~el~r~LkpgG~l~i~e~~~~~~-------~~~~  235 (294)
                      + .++.+|+...+ +++   ++||+|++..+++    +. ++..++.++.++|+|||.|++.++.....       ....
T Consensus       136 v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~  215 (265)
T 2i62_A          136 IKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSYYMIGEQKFSSL  215 (265)
T ss_dssp             EEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEECC
T ss_pred             heeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCceEEcCCcccccc
Confidence            5 78899998754 355   7899999999999    42 67899999999999999999987543110       0112


Q ss_pred             CCCHHHHHHHHHHCCCeEEEEeccC----------CeEEEEEEEECC
Q 022592          236 GADPNKFSKAVCDLGFAPVSKDFSN----------KMFIMFYFKKKE  272 (294)
Q Consensus       236 ~~~~~~~~~~l~~~Gf~~~~~~~~~----------~~f~~i~~~k~~  272 (294)
                      .++.+++..+|+++||+++......          ..+.+++++|..
T Consensus       216 ~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~~  262 (265)
T 2i62_A          216 PLGWETVRDAVEEAGYTIEQFEVISQNYSSTTSNNEGLFSLVGRKPG  262 (265)
T ss_dssp             CCCHHHHHHHHHHTTCEEEEEEEECCCCCTTTBCCCCEEEEEEECCC
T ss_pred             ccCHHHHHHHHHHCCCEEEEEEEecccCCccccccceEEEEEecccc
Confidence            3688999999999999998855422          245566666653

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.62  E-value=1.7e-14  Score=131.53  Aligned_cols=127  Identities=13%  Similarity=0.104  Sum_probs=100.5

Q ss_pred             CCCEEEEEcCcccHHHHHhc-----cceEEEeccC---------------CCCcEEEccCCCCCCCCCCccEEEEccccc
Q 022592          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLM  200 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~---------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~  200 (294)
                      +..+|||||||+|.++..++     ..++++|+..               .++.++.+|+. .+++. +||+|++..+||
T Consensus       169 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~p~-~~D~v~~~~vlh  246 (332)
T 3i53_A          169 ALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSFF-DPLPA-GAGGYVLSAVLH  246 (332)
T ss_dssp             GGSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTT-SCCCC-SCSEEEEESCGG
T ss_pred             CCCEEEEeCCChhHHHHHHHHHCCCCeEEEecCHHHHHHHHHhhhhcCcCcCeEEecCCCC-CCCCC-CCcEEEEehhhc
Confidence            34699999999999998886     2689999832               35889999997 45555 799999999999


Q ss_pred             CCCH---HHHHHHHHHhcCcCcEEEEEeecCCCC-------------CCCCCCCHHHHHHHHHHCCCeEEEEeccCCeEE
Q 022592          201 GINF---PNYLQEAQRVLKPSGWLLIAEVKSRFD-------------PNTGGADPNKFSKAVCDLGFAPVSKDFSNKMFI  264 (294)
Q Consensus       201 ~~~~---~~~l~el~r~LkpgG~l~i~e~~~~~~-------------~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~f~  264 (294)
                      +.+.   ..++++++++|+|||+|+|.+......             .....++.+++..+++++||+++....... +.
T Consensus       247 ~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~-~~  325 (332)
T 3i53_A          247 DWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDEHAGTGMDLRMLTYFGGKERSLAELGELAAQAGLAVRAAHPISY-VS  325 (332)
T ss_dssp             GSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC---CCHHHHHHHHHHHSCCCCCHHHHHHHHHHTTEEEEEEEECSS-SE
T ss_pred             cCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCCCCccHHHHHHHHhhCCCCCCCHHHHHHHHHHCCCEEEEEEECCC-cE
Confidence            8643   789999999999999999988543221             011236899999999999999998766556 88


Q ss_pred             EEEEEE
Q 022592          265 MFYFKK  270 (294)
Q Consensus       265 ~i~~~k  270 (294)
                      ++++++
T Consensus       326 vie~r~  331 (332)
T 3i53_A          326 IVEMTA  331 (332)
T ss_dssp             EEEEEE
T ss_pred             EEEEee
Confidence            888875

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.61  E-value=1.7e-15  Score=135.13  Aligned_cols=118  Identities=16%  Similarity=0.186  Sum_probs=94.4

Q ss_pred             CCCCEEEEEcCcccHHHHHhc----cceEEEeccC----------------CCCcEEEccCCCCCC-CCCCccEEEEccc
Q 022592          140 SPSLVIADFGCGDARLAKSVK----NKVFSFDLVS----------------NDPSVIACDMSNTPL-NSSSVDVAVFCLS  198 (294)
Q Consensus       140 ~~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~----------------~~~~~~~~d~~~lp~-~~~~fD~Vi~~~~  198 (294)
                      .++.+|||||||+|.++..++    ..|+|+|+|+                .++.++.+|+..+++ ++++||+|++..+
T Consensus        63 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~  142 (298)
T 1ri5_A           63 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFS  142 (298)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESC
T ss_pred             CCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECch
Confidence            366799999999999887775    3899999997                136889999999888 5789999999999


Q ss_pred             ccC--C---CHHHHHHHHHHhcCcCcEEEEEeecCC------------------------CCCC----------------
Q 022592          199 LMG--I---NFPNYLQEAQRVLKPSGWLLIAEVKSR------------------------FDPN----------------  233 (294)
Q Consensus       199 l~~--~---~~~~~l~el~r~LkpgG~l~i~e~~~~------------------------~~~~----------------  233 (294)
                      ++|  .   ++..+++++.++|+|||.+++......                        ..+.                
T Consensus       143 l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~  222 (298)
T 1ri5_A          143 FHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLLDSVNN  222 (298)
T ss_dssp             GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHHHHHTCCBCSSEEEECCCCSSCCTTTCCEEEEEETTSCSS
T ss_pred             hhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHccCccCCeeEEEEeCccccccccccceEEEEEchhhcC
Confidence            987  2   567899999999999999999754310                        0010                


Q ss_pred             --CCCCCHHHHHHHHHHCCCeEEEEe
Q 022592          234 --TGGADPNKFSKAVCDLGFAPVSKD  257 (294)
Q Consensus       234 --~~~~~~~~~~~~l~~~Gf~~~~~~  257 (294)
                        ...++.+++..+++++||+++...
T Consensus       223 ~~~~~~~~~~l~~ll~~aGf~~v~~~  248 (298)
T 1ri5_A          223 CIEYFVDFTRMVDGFKRLGLSLVERK  248 (298)
T ss_dssp             EEEECCCHHHHHHHHHTTTEEEEEEE
T ss_pred             CcccccCHHHHHHHHHHcCCEEEEec
Confidence              012588999999999999998843

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.61  E-value=2.1e-14  Score=118.71  Aligned_cols=135  Identities=15%  Similarity=0.212  Sum_probs=103.2

Q ss_pred             CcHHHHHHHHhhcc-CCCCEEEEEcCcccHHHHHhcc--ceEEEeccC------CCCcEEEccCCCCCCCCCCccEEEEc
Q 022592          126 ELPVNIIVKWLKDH-SPSLVIADFGCGDARLAKSVKN--KVFSFDLVS------NDPSVIACDMSNTPLNSSSVDVAVFC  196 (294)
Q Consensus       126 ~~~~~~~~~~l~~~-~~~~~VLDiGcG~G~~~~~l~~--~v~gvD~s~------~~~~~~~~d~~~lp~~~~~fD~Vi~~  196 (294)
                      ......+++.+... .++.+|||+|||+|.++..++.  .|+|+|+|+      .++.++.+|+.. ++++++||+|+++
T Consensus         7 ~~~~~~l~~~l~~~~~~~~~vLD~GcG~G~~~~~l~~~~~v~gvD~s~~~~~~~~~~~~~~~d~~~-~~~~~~fD~i~~n   85 (170)
T 3q87_B            7 GEDTYTLMDALEREGLEMKIVLDLGTSTGVITEQLRKRNTVVSTDLNIRALESHRGGNLVRADLLC-SINQESVDVVVFN   85 (170)
T ss_dssp             CHHHHHHHHHHHHHTCCSCEEEEETCTTCHHHHHHTTTSEEEEEESCHHHHHTCSSSCEEECSTTT-TBCGGGCSEEEEC
T ss_pred             CccHHHHHHHHHhhcCCCCeEEEeccCccHHHHHHHhcCcEEEEECCHHHHhcccCCeEEECChhh-hcccCCCCEEEEC
Confidence            33445566665541 2567999999999999998874  799999997      578899999987 6667899999999


Q ss_pred             ccccCC-C---------HHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEEe---ccCCeE
Q 022592          197 LSLMGI-N---------FPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSKD---FSNKMF  263 (294)
Q Consensus       197 ~~l~~~-~---------~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~---~~~~~f  263 (294)
                      ..+++. +         ...++.++.+.| |||.+++.....        ...+++.++++++||.++...   .....+
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~--------~~~~~l~~~l~~~gf~~~~~~~~~~~~e~~  156 (170)
T 3q87_B           86 PPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEA--------NRPKEVLARLEERGYGTRILKVRKILGETV  156 (170)
T ss_dssp             CCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGG--------GCHHHHHHHHHHTTCEEEEEEEEECSSSEE
T ss_pred             CCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEecC--------CCHHHHHHHHHHCCCcEEEEEeeccCCceE
Confidence            888863 2         357889999999 999999987442        245889999999999987743   344455


Q ss_pred             EEEEEEE
Q 022592          264 IMFYFKK  270 (294)
Q Consensus       264 ~~i~~~k  270 (294)
                      +.+.+.|
T Consensus       157 ~~~~~~~  163 (170)
T 3q87_B          157 YIIKGEK  163 (170)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEec
Confidence            5555544

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.61  E-value=1e-15  Score=129.25  Aligned_cols=122  Identities=11%  Similarity=0.057  Sum_probs=94.4

Q ss_pred             HHHhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccC--------------CCCcEEEccCCCCCCCCCCccEEEE
Q 022592          133 VKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS--------------NDPSVIACDMSNTPLNSSSVDVAVF  195 (294)
Q Consensus       133 ~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~--------------~~~~~~~~d~~~lp~~~~~fD~Vi~  195 (294)
                      ...+....++ +|||||||+|.++..++   ..|+|+|+|+              .++.++.+|+..+++++++||+|++
T Consensus        22 ~~~~~~~~~~-~vLdiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~  100 (202)
T 2kw5_A           22 VSVANQIPQG-KILCLAEGEGRNACFLASLGYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVS  100 (202)
T ss_dssp             HHHHHHSCSS-EEEECCCSCTHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEE
T ss_pred             HHHHHhCCCC-CEEEECCCCCHhHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEE
Confidence            3333333466 99999999999998887   3799999997              2678889999999888899999998


Q ss_pred             cccccC-CCHHHHHHHHHHhcCcCcEEEEEeecCCCCC---C-----CCCCCHHHHHHHHHHCCCeEEEEe
Q 022592          196 CLSLMG-INFPNYLQEAQRVLKPSGWLLIAEVKSRFDP---N-----TGGADPNKFSKAVCDLGFAPVSKD  257 (294)
Q Consensus       196 ~~~l~~-~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~---~-----~~~~~~~~~~~~l~~~Gf~~~~~~  257 (294)
                      +....+ .++..++.++.++|+|||.+++..+......   .     ...++.+++..+++  ||+++...
T Consensus       101 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--Gf~v~~~~  169 (202)
T 2kw5_A          101 IFCHLPSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPKDLDLLPKLETLQSELP--SLNWLIAN  169 (202)
T ss_dssp             ECCCCCHHHHHHHHHHHHTTCCSSEEEEEEEECTTTGGGTSCCSSSGGGCCCHHHHHHHCS--SSCEEEEE
T ss_pred             EhhcCCHHHHHHHHHHHHHhcCCCcEEEEEEeccccccCCCCCCCcceeecCHHHHHHHhc--CceEEEEE
Confidence            643222 2577999999999999999999876542211   1     12479999999999  99998843

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.61  E-value=1e-14  Score=128.96  Aligned_cols=126  Identities=16%  Similarity=0.149  Sum_probs=97.1

Q ss_pred             HHHHHhhccCCCCEEEEEcCcccHHHHHhc------cceEEEeccCC----------------------CCcEEEcc---
Q 022592          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVSN----------------------DPSVIACD---  179 (294)
Q Consensus       131 ~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~~----------------------~~~~~~~d---  179 (294)
                      .+++.+... ++.+|||||||+|.++..++      ..|+|+|+|+.                      ++.++.+|   
T Consensus        34 ~l~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  112 (275)
T 3bkx_A           34 AIAEAWQVK-PGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLS  112 (275)
T ss_dssp             HHHHHHTCC-TTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTT
T ss_pred             HHHHHcCCC-CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhh
Confidence            355555443 67799999999999888775      37999999873                      56788888   


Q ss_pred             CCCCCCCCCCccEEEEcccccCC-CHHHHHHHHHHhcCcCcEEEEEeecCCCC--------------------------C
Q 022592          180 MSNTPLNSSSVDVAVFCLSLMGI-NFPNYLQEAQRVLKPSGWLLIAEVKSRFD--------------------------P  232 (294)
Q Consensus       180 ~~~lp~~~~~fD~Vi~~~~l~~~-~~~~~l~el~r~LkpgG~l~i~e~~~~~~--------------------------~  232 (294)
                      ...+|+++++||+|++..+++|. ++..+++.+.++++|||.+++.++.....                          .
T Consensus       113 ~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (275)
T 3bkx_A          113 DDLGPIADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVAEWSMQPTALDQIGHLQAAMIQGLLYAIAPSDVAN  192 (275)
T ss_dssp             TCCGGGTTCCCSEEEEESCGGGSSCHHHHHHHHHHHTTTCSEEEEEEECSSCSSGGGHHHHHHHHHHHHHHHHSCCTTCS
T ss_pred             hccCCCCCCCEEEEEEccchhhCCCHHHHHHHHHHHhCCCCEEEEEEecCCCCchhhhhHHHHHHHHHHHhhcccccccc
Confidence            45667788999999999999995 67777777777777799999987553211                          1


Q ss_pred             CCCCCCHHHHHHHHHHCCCeEEEEe
Q 022592          233 NTGGADPNKFSKAVCDLGFAPVSKD  257 (294)
Q Consensus       233 ~~~~~~~~~~~~~l~~~Gf~~~~~~  257 (294)
                      ....++.+++..+++++||+++...
T Consensus       193 ~~~~~s~~~l~~~l~~aGf~~~~~~  217 (275)
T 3bkx_A          193 IRTLITPDTLAQIAHDNTWTYTAGT  217 (275)
T ss_dssp             CCCCCCHHHHHHHHHHHTCEEEECC
T ss_pred             ccccCCHHHHHHHHHHCCCeeEEEE
Confidence            1124689999999999999998744

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.61  E-value=2.5e-16  Score=148.12  Aligned_cols=126  Identities=16%  Similarity=0.215  Sum_probs=97.1

Q ss_pred             HHHHhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccCC--------CCcEE-----EccCCCCCCCCCCccEEEE
Q 022592          132 IVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVSN--------DPSVI-----ACDMSNTPLNSSSVDVAVF  195 (294)
Q Consensus       132 ~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~~--------~~~~~-----~~d~~~lp~~~~~fD~Vi~  195 (294)
                      ++..+... ++.+|||||||+|.++..++   ..|+|+|+|+.        .+...     ..+...+|+++++||+|++
T Consensus        99 l~~~~~~~-~~~~VLDiGcG~G~~~~~l~~~g~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~fD~I~~  177 (416)
T 4e2x_A           99 FLATELTG-PDPFIVEIGCNDGIMLRTIQEAGVRHLGFEPSSGVAAKAREKGIRVRTDFFEKATADDVRRTEGPANVIYA  177 (416)
T ss_dssp             HHHTTTCS-SSCEEEEETCTTTTTHHHHHHTTCEEEEECCCHHHHHHHHTTTCCEECSCCSHHHHHHHHHHHCCEEEEEE
T ss_pred             HHHHhCCC-CCCEEEEecCCCCHHHHHHHHcCCcEEEECCCHHHHHHHHHcCCCcceeeechhhHhhcccCCCCEEEEEE
Confidence            44444332 56799999999999998887   38999999972        22222     2344445677889999999


Q ss_pred             cccccCC-CHHHHHHHHHHhcCcCcEEEEEeec-----------CCCCCCCCCCCHHHHHHHHHHCCCeEEEEec
Q 022592          196 CLSLMGI-NFPNYLQEAQRVLKPSGWLLIAEVK-----------SRFDPNTGGADPNKFSKAVCDLGFAPVSKDF  258 (294)
Q Consensus       196 ~~~l~~~-~~~~~l~el~r~LkpgG~l~i~e~~-----------~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  258 (294)
                      ..+|+|. ++..+++++.++|+|||.+++....           ..+......++.+++..+++++||+++....
T Consensus       178 ~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~~~~~~  252 (416)
T 4e2x_A          178 ANTLCHIPYVQSVLEGVDALLAPDGVFVFEDPYLGDIVAKTSFDQIFDEHFFLFSATSVQGMAQRCGFELVDVQR  252 (416)
T ss_dssp             ESCGGGCTTHHHHHHHHHHHEEEEEEEEEEEECHHHHHHHTCGGGCSTTCCEECCHHHHHHHHHHTTEEEEEEEE
T ss_pred             CChHHhcCCHHHHHHHHHHHcCCCeEEEEEeCChHHhhhhcchhhhhhhhhhcCCHHHHHHHHHHcCCEEEEEEE
Confidence            9999996 8999999999999999999997532           1222334457999999999999999988654

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.60  E-value=1.9e-14  Score=132.72  Aligned_cols=139  Identities=15%  Similarity=0.195  Sum_probs=106.8

Q ss_pred             cHHHHHHHHhhccCCCCEEEEEcCcccHHHHHhc-----cceEEEeccC----------------CCCcEEEccCCCCCC
Q 022592          127 LPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS----------------NDPSVIACDMSNTPL  185 (294)
Q Consensus       127 ~~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~----------------~~~~~~~~d~~~lp~  185 (294)
                      .....+++.+... ++.+|||||||+|.++..++     .+++++|+ +                .++.++.+|+...|+
T Consensus       177 ~~~~~l~~~~~~~-~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~  254 (359)
T 1x19_A          177 FAIQLLLEEAKLD-GVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESY  254 (359)
T ss_dssp             HHHHHHHHHCCCT-TCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCC
T ss_pred             hhHHHHHHhcCCC-CCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCC
Confidence            3445566665433 56799999999999988886     27899999 5                247899999998877


Q ss_pred             CCCCccEEEEcccccCC-C--HHHHHHHHHHhcCcCcEEEEEeecCCCC---------------CCCCC----CCHHHHH
Q 022592          186 NSSSVDVAVFCLSLMGI-N--FPNYLQEAQRVLKPSGWLLIAEVKSRFD---------------PNTGG----ADPNKFS  243 (294)
Q Consensus       186 ~~~~fD~Vi~~~~l~~~-~--~~~~l~el~r~LkpgG~l~i~e~~~~~~---------------~~~~~----~~~~~~~  243 (294)
                      ++.  |+|++..++|+. +  ...+++++.++|+|||.+++.++.....               .....    ++.+++.
T Consensus       255 ~~~--D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~t~~e~~  332 (359)
T 1x19_A          255 PEA--DAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYK  332 (359)
T ss_dssp             CCC--SEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECCCCTTSCCHHHHHHHGGGGGSSCCCCCCCCGGGHH
T ss_pred             CCC--CEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEecccCCCCCchHHHHHHHHHhcCCCCcccCCCCHHHHH
Confidence            654  999999999985 3  6789999999999999999988543210               00111    7889999


Q ss_pred             HHHHHCCCeEEEEeccCCeEEEEEEEE
Q 022592          244 KAVCDLGFAPVSKDFSNKMFIMFYFKK  270 (294)
Q Consensus       244 ~~l~~~Gf~~~~~~~~~~~f~~i~~~k  270 (294)
                      ++++++||+++...... ...+++++|
T Consensus       333 ~ll~~aGf~~v~~~~~~-~~~vi~a~k  358 (359)
T 1x19_A          333 EILESLGYKDVTMVRKY-DHLLVQAVK  358 (359)
T ss_dssp             HHHHHHTCEEEEEEEET-TEEEEEEEC
T ss_pred             HHHHHCCCceEEEEecC-CceEEEEeC
Confidence            99999999998865544 667777765

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.60  E-value=5.5e-15  Score=133.82  Aligned_cols=114  Identities=15%  Similarity=0.234  Sum_probs=93.7

Q ss_pred             CCCEEEEEcCcccHHHHHhc----cceEEEeccC----------------CCCcEEEccCCCCCCCCCCccEEEEccccc
Q 022592          141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLM  200 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~----------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~  200 (294)
                      ++.+|||||||+|.++..++    ..|+|+|+|+                .++.++.+|+.++|   ++||+|++..+++
T Consensus        90 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~fD~v~~~~~l~  166 (318)
T 2fk8_A           90 PGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA---EPVDRIVSIEAFE  166 (318)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC---CCCSEEEEESCGG
T ss_pred             CcCEEEEEcccchHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC---CCcCEEEEeChHH
Confidence            66799999999999988776    3799999997                24788899988775   7899999999999


Q ss_pred             CC---CHHHHHHHHHHhcCcCcEEEEEeecCCC--------------------------CCCCCCCCHHHHHHHHHHCCC
Q 022592          201 GI---NFPNYLQEAQRVLKPSGWLLIAEVKSRF--------------------------DPNTGGADPNKFSKAVCDLGF  251 (294)
Q Consensus       201 ~~---~~~~~l~el~r~LkpgG~l~i~e~~~~~--------------------------~~~~~~~~~~~~~~~l~~~Gf  251 (294)
                      |.   ++..++.++.++|+|||.+++.++....                          .+....++.+++..+++++||
T Consensus       167 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGf  246 (318)
T 2fk8_A          167 HFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPSTEMMVEHGEKAGF  246 (318)
T ss_dssp             GTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCCHHHHHHHHHHTTC
T ss_pred             hcCHHHHHHHHHHHHHhcCCCcEEEEEEeccCCchhhhhccccccccccchhhHHHHhcCCCCcCCCHHHHHHHHHhCCC
Confidence            96   6789999999999999999998765321                          111223589999999999999


Q ss_pred             eEEEEe
Q 022592          252 APVSKD  257 (294)
Q Consensus       252 ~~~~~~  257 (294)
                      +++...
T Consensus       247 ~~~~~~  252 (318)
T 2fk8_A          247 TVPEPL  252 (318)
T ss_dssp             BCCCCE
T ss_pred             EEEEEE
Confidence            987643

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.60  E-value=2.4e-14  Score=132.44  Aligned_cols=140  Identities=12%  Similarity=0.090  Sum_probs=104.7

Q ss_pred             HHHHhhccCCCCEEEEEcCcccHHHHHhc-----cceEEEeccC---------------CCCcEEEccCCCC--CCCCCC
Q 022592          132 IVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSNT--PLNSSS  189 (294)
Q Consensus       132 ~~~~l~~~~~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~---------------~~~~~~~~d~~~l--p~~~~~  189 (294)
                      ++..+... ...+|||||||+|.++..++     .+++++|+..               .++.++.+|+...  |++ ++
T Consensus       171 ~l~~~~~~-~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p-~~  248 (363)
T 3dp7_A          171 ALEIVFSH-HPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFP-TG  248 (363)
T ss_dssp             HHHHHGGG-CCSEEEEESCTTCHHHHHHHHHSTTCEEEEEECHHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCC-CC
T ss_pred             HHHHhccc-CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeCHHHHHHHHHHHHhcCcccceEEEEccccccCCCCC-CC
Confidence            34444333 45699999999999998886     2799999832               2578999999875  566 78


Q ss_pred             ccEEEEcccccCCC---HHHHHHHHHHhcCcCcEEEEEeecCCCC---------------------CCCCCCCHHHHHHH
Q 022592          190 VDVAVFCLSLMGIN---FPNYLQEAQRVLKPSGWLLIAEVKSRFD---------------------PNTGGADPNKFSKA  245 (294)
Q Consensus       190 fD~Vi~~~~l~~~~---~~~~l~el~r~LkpgG~l~i~e~~~~~~---------------------~~~~~~~~~~~~~~  245 (294)
                      ||+|++..+||+.+   ...+++++.++|+|||.|+|.+......                     .....++.+++..+
T Consensus       249 ~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l  328 (363)
T 3dp7_A          249 FDAVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQISLYFTAMANGNSKMFHSDDLIRC  328 (363)
T ss_dssp             CSEEEEESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTSCSSHHHHHHHHHHHHHHHHSSCSSCCSCCHHHHHHH
T ss_pred             cCEEEEechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCCccccchhhHHHHhhhhHHhhhCCCCcccCHHHHHHH
Confidence            99999999999853   3478999999999999999987532211                     11123589999999


Q ss_pred             HHHCCCeEEEEec-cCCeEEEEEEEECCc
Q 022592          246 VCDLGFAPVSKDF-SNKMFIMFYFKKKEK  273 (294)
Q Consensus       246 l~~~Gf~~~~~~~-~~~~f~~i~~~k~~~  273 (294)
                      |+++||+++.+.. ....+.++.+++...
T Consensus       329 l~~AGf~~v~~~~~~g~~~svi~~~~~~~  357 (363)
T 3dp7_A          329 IENAGLEVEEIQDNIGLGHSILQCRLKEG  357 (363)
T ss_dssp             HHTTTEEESCCCCCBTTTBEEEEEEEC--
T ss_pred             HHHcCCeEEEEEeCCCCCceEEEEeeccc
Confidence            9999999988653 334477888877653

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.59  E-value=3e-14  Score=130.81  Aligned_cols=139  Identities=15%  Similarity=0.151  Sum_probs=106.0

Q ss_pred             HHHHHhhccCCCCEEEEEcCcccHHHHHhc-----cceEEEeccC---------------CCCcEEEccCCCCC-CCCCC
Q 022592          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSNTP-LNSSS  189 (294)
Q Consensus       131 ~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~---------------~~~~~~~~d~~~lp-~~~~~  189 (294)
                      .++..+.....+.+|||||||+|.++..++     ..++++|+..               .++.++.+|+...+ +..+.
T Consensus       169 ~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  248 (352)
T 3mcz_A          169 DVVSELGVFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGA  248 (352)
T ss_dssp             HHHHTCGGGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCC
T ss_pred             HHHHhCCCcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEECHHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCC
Confidence            455555443226799999999999998886     2789999943               25789999998876 13456


Q ss_pred             ccEEEEcccccCCC---HHHHHHHHHHhcCcCcEEEEEeecCCC------------------CCCCCCCCHHHHHHHHHH
Q 022592          190 VDVAVFCLSLMGIN---FPNYLQEAQRVLKPSGWLLIAEVKSRF------------------DPNTGGADPNKFSKAVCD  248 (294)
Q Consensus       190 fD~Vi~~~~l~~~~---~~~~l~el~r~LkpgG~l~i~e~~~~~------------------~~~~~~~~~~~~~~~l~~  248 (294)
                      ||+|++..++||.+   ...+++++.++|+|||.|++.+.....                  ......++.+++..++++
T Consensus       249 ~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~  328 (352)
T 3mcz_A          249 ADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALSADFSLHMMVNTNHGELHPTPWIAGVVRD  328 (352)
T ss_dssp             EEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSHHHHHHHHHHHHHSTTCCCCCHHHHHHHHHH
T ss_pred             ccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCchHHHhhHHHHhhCCCCCcCCHHHHHHHHHH
Confidence            99999999999864   368999999999999999998753211                  112234789999999999


Q ss_pred             CCCeEEEEeccCCeEEEEEEEEC
Q 022592          249 LGFAPVSKDFSNKMFIMFYFKKK  271 (294)
Q Consensus       249 ~Gf~~~~~~~~~~~f~~i~~~k~  271 (294)
                      +||+++....  ..+.+++++|.
T Consensus       329 aGf~~~~~~~--g~~~l~~a~kp  349 (352)
T 3mcz_A          329 AGLAVGERSI--GRYTLLIGQRS  349 (352)
T ss_dssp             TTCEEEEEEE--TTEEEEEEECC
T ss_pred             CCCceeeecc--CceEEEEEecC
Confidence            9999998543  45778888775

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.58  E-value=2.2e-15  Score=135.05  Aligned_cols=118  Identities=14%  Similarity=0.130  Sum_probs=86.1

Q ss_pred             CCCEEEEEcCcccHHHHH----hc---c--c--eEEEeccCC----------------CCcE--EEccCCCCC------C
Q 022592          141 PSLVIADFGCGDARLAKS----VK---N--K--VFSFDLVSN----------------DPSV--IACDMSNTP------L  185 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~----l~---~--~--v~gvD~s~~----------------~~~~--~~~d~~~lp------~  185 (294)
                      ++.+|||||||+|.++..    ++   .  .  ++|+|+|+.                ++.+  ..+++.+++      +
T Consensus        52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  131 (292)
T 2aot_A           52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKK  131 (292)
T ss_dssp             SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTTT
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhcccc
Confidence            456899999999975432    22   1  2  399999962                2222  334444333      5


Q ss_pred             CCCCccEEEEcccccCC-CHHHHHHHHHHhcCcCcEEEEEeecCC-------------CC--CCCCCCCHHHHHHHHHHC
Q 022592          186 NSSSVDVAVFCLSLMGI-NFPNYLQEAQRVLKPSGWLLIAEVKSR-------------FD--PNTGGADPNKFSKAVCDL  249 (294)
Q Consensus       186 ~~~~fD~Vi~~~~l~~~-~~~~~l~el~r~LkpgG~l~i~e~~~~-------------~~--~~~~~~~~~~~~~~l~~~  249 (294)
                      ++++||+|+++.+|||. |+..+++++.++|||||.++++.....             ..  .....++.+++..+|+++
T Consensus       132 ~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a  211 (292)
T 2aot_A          132 ELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRFPQDDLCQYITSDDLTQMLDNL  211 (292)
T ss_dssp             CCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECTTSHHHHHHHHHGGGSCCCTTCCCCCHHHHHHHHHHH
T ss_pred             CCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCCcEEEEEEecCCccHHHHHHHHHHhccCCCcccCCCHHHHHHHHHHC
Confidence            67899999999999996 899999999999999999999864321             00  122347899999999999


Q ss_pred             CCeEEEEec
Q 022592          250 GFAPVSKDF  258 (294)
Q Consensus       250 Gf~~~~~~~  258 (294)
                      ||.++....
T Consensus       212 Gf~~~~~~~  220 (292)
T 2aot_A          212 GLKYECYDL  220 (292)
T ss_dssp             TCCEEEEEE
T ss_pred             CCceEEEEe
Confidence            998876433

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=99.58  E-value=1e-14  Score=135.34  Aligned_cols=138  Identities=17%  Similarity=0.220  Sum_probs=102.5

Q ss_pred             HHHHHHhhccCCCCEEEEEcCcccHHHHHhcc-----ceEEEeccC--------CCCcEEEccCCCCCCCCCCccEEEEc
Q 022592          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVKN-----KVFSFDLVS--------NDPSVIACDMSNTPLNSSSVDVAVFC  196 (294)
Q Consensus       130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~~-----~v~gvD~s~--------~~~~~~~~d~~~lp~~~~~fD~Vi~~  196 (294)
                      ..++..+....+..+|||||||+|.++..++.     .++++|+..        .++.++.+|+.. +++.  ||+|++.
T Consensus       198 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~-~~~~--~D~v~~~  274 (372)
T 1fp1_D          198 KRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEHVGGDMFA-SVPQ--GDAMILK  274 (372)
T ss_dssp             HHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTT-CCCC--EEEEEEE
T ss_pred             HHHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeChHHHHHhhhhcCCCEEEeCCccc-CCCC--CCEEEEe
Confidence            34455543223557999999999999988862     578889832        467899999987 6654  9999999


Q ss_pred             ccccCC-CHH--HHHHHHHHhcCcCcEEEEEeecCCCCC--------------------CCCCCCHHHHHHHHHHCCCeE
Q 022592          197 LSLMGI-NFP--NYLQEAQRVLKPSGWLLIAEVKSRFDP--------------------NTGGADPNKFSKAVCDLGFAP  253 (294)
Q Consensus       197 ~~l~~~-~~~--~~l~el~r~LkpgG~l~i~e~~~~~~~--------------------~~~~~~~~~~~~~l~~~Gf~~  253 (294)
                      .+|||. +..  .+++++.++|+|||.|+|.++......                    ....++.+++..+++++||++
T Consensus       275 ~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~  354 (372)
T 1fp1_D          275 AVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSK  354 (372)
T ss_dssp             SSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCSE
T ss_pred             cccccCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCccchHHHHHHHhhHHHHhccCCccCCHHHHHHHHHHCCCce
Confidence            999985 444  899999999999999999875421111                    112358899999999999999


Q ss_pred             EEEec-cCCeEEEEEEEE
Q 022592          254 VSKDF-SNKMFIMFYFKK  270 (294)
Q Consensus       254 ~~~~~-~~~~f~~i~~~k  270 (294)
                      +.... ....+.++++++
T Consensus       355 ~~~~~~~~~~~~vie~~~  372 (372)
T 1fp1_D          355 FQVACRAFNSLGVMEFYK  372 (372)
T ss_dssp             EEEEEEETTTEEEEEEEC
T ss_pred             EEEEEcCCCCeEEEEEeC
Confidence            88654 333247777754

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.58  E-value=2.1e-14  Score=132.84  Aligned_cols=139  Identities=17%  Similarity=0.182  Sum_probs=104.9

Q ss_pred             HHHHHHhhccCCCCEEEEEcCcccHHHHHhc-----cceEEEeccC----------------CCCcEEEccCCCCCCCCC
Q 022592          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS----------------NDPSVIACDMSNTPLNSS  188 (294)
Q Consensus       130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~----------------~~~~~~~~d~~~lp~~~~  188 (294)
                      ..+++.+... ++.+|||||||+|.++..++     ..++++|+ +                .++.++.+|+.+ +++. 
T Consensus       172 ~~~~~~~~~~-~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~-  247 (374)
T 1qzz_A          172 EAPADAYDWS-AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-PLPV-  247 (374)
T ss_dssp             HHHHHTSCCT-TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSC-
T ss_pred             HHHHHhCCCC-CCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-cCCC-
Confidence            4455554332 56799999999999988876     27899998 5                268899999876 4444 


Q ss_pred             CccEEEEcccccCCCH---HHHHHHHHHhcCcCcEEEEEee--cCCCC----------------CCCCCCCHHHHHHHHH
Q 022592          189 SVDVAVFCLSLMGINF---PNYLQEAQRVLKPSGWLLIAEV--KSRFD----------------PNTGGADPNKFSKAVC  247 (294)
Q Consensus       189 ~fD~Vi~~~~l~~~~~---~~~l~el~r~LkpgG~l~i~e~--~~~~~----------------~~~~~~~~~~~~~~l~  247 (294)
                      .||+|++..++||.+.   ..+++++.++|+|||.+++.++  .....                .....++.+++..+++
T Consensus       248 ~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~  327 (374)
T 1qzz_A          248 TADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAG  327 (374)
T ss_dssp             CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHH
T ss_pred             CCCEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEechhhcCCCCCcchhhhcchHHHHhCCCcCCCHHHHHHHHH
Confidence            3999999999998643   3899999999999999999887  31100                0122368999999999


Q ss_pred             HCCCeEEEEeccCCeE-----EEEEEEECC
Q 022592          248 DLGFAPVSKDFSNKMF-----IMFYFKKKE  272 (294)
Q Consensus       248 ~~Gf~~~~~~~~~~~f-----~~i~~~k~~  272 (294)
                      ++||+++........+     .++++++..
T Consensus       328 ~aGf~~~~~~~~~~~~~~~~~~~i~~~~~~  357 (374)
T 1qzz_A          328 SAGLALASERTSGSTTLPFDFSILEFTAVS  357 (374)
T ss_dssp             TTTEEEEEEEEECCSSCSSCEEEEEEEECC
T ss_pred             HCCCceEEEEECCCCcccCCcEEEEEEECc
Confidence            9999998866555555     888888865

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.57  E-value=6.1e-14  Score=129.14  Aligned_cols=141  Identities=13%  Similarity=0.170  Sum_probs=105.0

Q ss_pred             HHHHHHHhhccCCCCEEEEEcCcccHHHHHhc-----cceEEEeccC---------------CCCcEEEccCCCCCCCCC
Q 022592          129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSNTPLNSS  188 (294)
Q Consensus       129 ~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~---------------~~~~~~~~d~~~lp~~~~  188 (294)
                      ...+++.+... ++.+|||||||+|.++..++     ..++++|+..               .++.++.+|+.+ +++. 
T Consensus       172 ~~~l~~~~~~~-~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~-  248 (360)
T 1tw3_A          172 FDAPAAAYDWT-NVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFE-PLPR-  248 (360)
T ss_dssp             THHHHHHSCCT-TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSS-
T ss_pred             HHHHHHhCCCc-cCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecCHHHHHHHHHHHHhcCCCCceEEEeCCCCC-CCCC-
Confidence            34556655433 56799999999999988876     2688999722               268899999875 4444 


Q ss_pred             CccEEEEcccccCCCH---HHHHHHHHHhcCcCcEEEEEeec--CCCC---------------CCCCCCCHHHHHHHHHH
Q 022592          189 SVDVAVFCLSLMGINF---PNYLQEAQRVLKPSGWLLIAEVK--SRFD---------------PNTGGADPNKFSKAVCD  248 (294)
Q Consensus       189 ~fD~Vi~~~~l~~~~~---~~~l~el~r~LkpgG~l~i~e~~--~~~~---------------~~~~~~~~~~~~~~l~~  248 (294)
                      .||+|++..++|+.+.   ..+++++.++|+|||.+++.+..  ....               .....++.+++..+|++
T Consensus       249 ~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~  328 (360)
T 1tw3_A          249 KADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAAS  328 (360)
T ss_dssp             CEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHH
T ss_pred             CccEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCcchhhhccHHHhhhcCCcCCCHHHHHHHHHH
Confidence            3999999999998633   48999999999999999999865  1110               01223688999999999


Q ss_pred             CCCeEEEEeccCCe-----EEEEEEEECC
Q 022592          249 LGFAPVSKDFSNKM-----FIMFYFKKKE  272 (294)
Q Consensus       249 ~Gf~~~~~~~~~~~-----f~~i~~~k~~  272 (294)
                      +||+++........     +.+++++|..
T Consensus       329 aGf~~~~~~~~~~~~~~~~~~~i~~~~~~  357 (360)
T 1tw3_A          329 AGLVVEEVRQLPSPTIPYDLSLLVLAPAA  357 (360)
T ss_dssp             TTEEEEEEEEEECSSSSCEEEEEEEEEC-
T ss_pred             CCCeEEEEEeCCCCcccCccEEEEEEeCC
Confidence            99999886544433     7888888753

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.57  E-value=2.3e-14  Score=121.41  Aligned_cols=131  Identities=21%  Similarity=0.274  Sum_probs=96.9

Q ss_pred             HHHHhhcc-CCCCEEEEEcCcccHHHHHhc----cceEEEeccC-------------CCCcEEEccCCCCCCCCCCccEE
Q 022592          132 IVKWLKDH-SPSLVIADFGCGDARLAKSVK----NKVFSFDLVS-------------NDPSVIACDMSNTPLNSSSVDVA  193 (294)
Q Consensus       132 ~~~~l~~~-~~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~-------------~~~~~~~~d~~~lp~~~~~fD~V  193 (294)
                      +...+... .++.+|||||||+|.++..++    ..++|+|+|+             .++.++.+|+..+++++++||+|
T Consensus        32 ~~~~l~~~~~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v  111 (215)
T 2pxx_A           32 FRALLEPELRPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVV  111 (215)
T ss_dssp             HHHHHGGGCCTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEE
T ss_pred             HHHHHHHhcCCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccEE
Confidence            44444432 466799999999999988876    2799999997             36889999999999888999999


Q ss_pred             EEcccccCC----------------CHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCC--eEEE
Q 022592          194 VFCLSLMGI----------------NFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGF--APVS  255 (294)
Q Consensus       194 i~~~~l~~~----------------~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf--~~~~  255 (294)
                      ++..++++.                +...++.++.++|+|||.+++.++..          ......++...||  .+..
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~----------~~~~~~~~~~~~~~~~~~~  181 (215)
T 2pxx_A          112 LEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAA----------PHFRTRHYAQAYYGWSLRH  181 (215)
T ss_dssp             EEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC----------HHHHHHHHCCGGGCEEEEE
T ss_pred             EECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCC----------cHHHHHHHhccccCcEEEE
Confidence            998887642                34789999999999999999987442          2334455656665  4333


Q ss_pred             Eec-cCCeEEEEEEEECC
Q 022592          256 KDF-SNKMFIMFYFKKKE  272 (294)
Q Consensus       256 ~~~-~~~~f~~i~~~k~~  272 (294)
                      ... ...+++++.+++.+
T Consensus       182 ~~~~~~~~~~~~~~~~~~  199 (215)
T 2pxx_A          182 ATYGSGFHFHLYLMHKGG  199 (215)
T ss_dssp             EEESGGGCEEEEEEEETC
T ss_pred             EEecCcceEEEEEEEeCC
Confidence            222 33456677777765

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.57  E-value=3.2e-14  Score=123.71  Aligned_cols=123  Identities=15%  Similarity=0.136  Sum_probs=95.7

Q ss_pred             HHhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccC------------CCCcEEEccCCCCCCCC-----CCccEE
Q 022592          134 KWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS------------NDPSVIACDMSNTPLNS-----SSVDVA  193 (294)
Q Consensus       134 ~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~------------~~~~~~~~d~~~lp~~~-----~~fD~V  193 (294)
                      ..+....++.+|||||||+|.++..++   ..|+|+|+|+            .++.++++|+.++++..     ..||+|
T Consensus        49 ~~~~~~~~~~~vLD~GcG~G~~~~~la~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v  128 (245)
T 3ggd_A           49 RFELLFNPELPLIDFACGNGTQTKFLSQFFPRVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANI  128 (245)
T ss_dssp             HHTTTSCTTSCEEEETCTTSHHHHHHHHHSSCEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEE
T ss_pred             HHhhccCCCCeEEEEcCCCCHHHHHHHHhCCCEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEE
Confidence            333333466799999999999998887   3899999997            36789999998866432     248999


Q ss_pred             EEcccccCC---CHHHHHHHHHHhcCcCcEEEEEeecCCC------------------------CCCCCCCCHHHHHHHH
Q 022592          194 VFCLSLMGI---NFPNYLQEAQRVLKPSGWLLIAEVKSRF------------------------DPNTGGADPNKFSKAV  246 (294)
Q Consensus       194 i~~~~l~~~---~~~~~l~el~r~LkpgG~l~i~e~~~~~------------------------~~~~~~~~~~~~~~~l  246 (294)
                      ++..+++|.   +...+++++.++|+|||.+++.++....                        ......++.+++..++
T Consensus       129 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (245)
T 3ggd_A          129 YMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTGCIDFFNSLLEKYGQLPYELLLVMEHGIRPGIFTAEDIELYF  208 (245)
T ss_dssp             EEESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECTTHHHHHHHHHHHHSSCCHHHHHHHTTTCCCCCCCHHHHHHHC
T ss_pred             EEcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCccccHHHHHHHhCCCCCchhhhhccccCCCCCccCHHHHHHHh
Confidence            999999995   5679999999999999999998765321                        0111236889999999


Q ss_pred             HHCCCeEEEEec
Q 022592          247 CDLGFAPVSKDF  258 (294)
Q Consensus       247 ~~~Gf~~~~~~~  258 (294)
                        +||+++....
T Consensus       209 --aGf~~~~~~~  218 (245)
T 3ggd_A          209 --PDFEILSQGE  218 (245)
T ss_dssp             --TTEEEEEEEC
T ss_pred             --CCCEEEeccc
Confidence              9999987544

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=99.57  E-value=6.9e-14  Score=129.01  Aligned_cols=130  Identities=19%  Similarity=0.273  Sum_probs=104.0

Q ss_pred             CCCEEEEEcCcccHHHHHhcc-----ceEEEeccC--------------CCCcEEEccCCCCCCCCCCccEEEEcccccC
Q 022592          141 PSLVIADFGCGDARLAKSVKN-----KVFSFDLVS--------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMG  201 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~~-----~v~gvD~s~--------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~  201 (294)
                      ...+|||||||+|.++..++.     +++.+|+..              +++.++.+|+...|++  .+|+|++..+||+
T Consensus       179 ~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dlp~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~~--~~D~~~~~~vlh~  256 (353)
T 4a6d_A          179 VFPLMCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQEEEQIDFQEGDFFKDPLP--EADLYILARVLHD  256 (353)
T ss_dssp             GCSEEEEETCTTSHHHHHHHHHCSSCEEEEEECHHHHHHHHHHSCC--CCSEEEEESCTTTSCCC--CCSEEEEESSGGG
T ss_pred             cCCeEEeeCCCCCHHHHHHHHhCCCceeEeccCHHHHHHHHHhhhhcccCceeeecCccccCCCC--CceEEEeeeeccc
Confidence            456899999999999998872     677888643              5789999999876654  4799999999997


Q ss_pred             C-CH--HHHHHHHHHhcCcCcEEEEEeecCCCCC-----------------CCCCCCHHHHHHHHHHCCCeEEEEeccCC
Q 022592          202 I-NF--PNYLQEAQRVLKPSGWLLIAEVKSRFDP-----------------NTGGADPNKFSKAVCDLGFAPVSKDFSNK  261 (294)
Q Consensus       202 ~-~~--~~~l~el~r~LkpgG~l~i~e~~~~~~~-----------------~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~  261 (294)
                      . |.  ..+|++++++|+|||.++|.|..-.-..                 ....++.+++..+|+++||+++.+.....
T Consensus       257 ~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~~~~~dl~ml~~~~g~ert~~e~~~ll~~AGf~~v~v~~~~~  336 (353)
T 4a6d_A          257 WADGKCSHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQLYSLNMLVQTEGQERTPTHYHMLLSSAGFRDFQFKKTGA  336 (353)
T ss_dssp             SCHHHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCCHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHHTCEEEEEECCSS
T ss_pred             CCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHCCCceEEEEEcCC
Confidence            5 33  4789999999999999999985321111                 11125899999999999999999887788


Q ss_pred             eEEEEEEEECC
Q 022592          262 MFIMFYFKKKE  272 (294)
Q Consensus       262 ~f~~i~~~k~~  272 (294)
                      .+.+|+++|.-
T Consensus       337 ~~~~i~ArKgt  347 (353)
T 4a6d_A          337 IYDAILARKGT  347 (353)
T ss_dssp             SCEEEEEECCC
T ss_pred             ceEEEEEEecC
Confidence            88999999864

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.57  E-value=1.8e-14  Score=122.89  Aligned_cols=139  Identities=12%  Similarity=0.202  Sum_probs=99.4

Q ss_pred             HHHHhhccCCCCEEEEEcCcccHHHHHhcc---ceEEEeccC-------------CCCcEEEccCCCCCCCCCCccEEEE
Q 022592          132 IVKWLKDHSPSLVIADFGCGDARLAKSVKN---KVFSFDLVS-------------NDPSVIACDMSNTPLNSSSVDVAVF  195 (294)
Q Consensus       132 ~~~~l~~~~~~~~VLDiGcG~G~~~~~l~~---~v~gvD~s~-------------~~~~~~~~d~~~lp~~~~~fD~Vi~  195 (294)
                      ++..+....++.+|||||||+|.++..++.   .|+|+|+|+             .++.++.+|+..++ ++++||+|++
T Consensus        42 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~-~~~~fD~v~~  120 (216)
T 3ofk_A           42 LLRLSLSSGAVSNGLEIGCAAGAFTEKLAPHCKRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFS-TAELFDLIVV  120 (216)
T ss_dssp             HHHHHTTTSSEEEEEEECCTTSHHHHHHGGGEEEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCC-CSCCEEEEEE
T ss_pred             HHHHHcccCCCCcEEEEcCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCC-CCCCccEEEE
Confidence            333333333567999999999999998873   799999987             35789999999988 6789999999


Q ss_pred             cccccCC-CH---HHHHHHHHHhcCcCcEEEEEeecCCCC-CCCCCCCHHHHHHHHHHCCCeEEE---E--eccCCeEEE
Q 022592          196 CLSLMGI-NF---PNYLQEAQRVLKPSGWLLIAEVKSRFD-PNTGGADPNKFSKAVCDLGFAPVS---K--DFSNKMFIM  265 (294)
Q Consensus       196 ~~~l~~~-~~---~~~l~el~r~LkpgG~l~i~e~~~~~~-~~~~~~~~~~~~~~l~~~Gf~~~~---~--~~~~~~f~~  265 (294)
                      ..+++|. ++   ..++.++.++|+|||.+++........ ........+.+..++.. ++..++   .  ......|.+
T Consensus       121 ~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~d~~l  199 (216)
T 3ofk_A          121 AEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSARDATCRRWGHVAGAETVITILTE-ALTEVERVQCQGQSADEDCLL  199 (216)
T ss_dssp             ESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHTTCSCCHHHHHHHHHH-HSEEEEEEEEECSSTTCEEEE
T ss_pred             ccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEecCCCcchhhhhhhhHHHHHHHHHh-hccceEEEeccCCccccchhH
Confidence            9999996 55   477999999999999999976443211 01112455666666654 344322   1  224566777


Q ss_pred             EEEEECC
Q 022592          266 FYFKKKE  272 (294)
Q Consensus       266 i~~~k~~  272 (294)
                      ..+++..
T Consensus       200 ~~~~~~~  206 (216)
T 3ofk_A          200 ARFRNPE  206 (216)
T ss_dssp             EEEECCC
T ss_pred             HHHhCCc
Confidence            7777754

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.56  E-value=2.9e-15  Score=129.29  Aligned_cols=105  Identities=13%  Similarity=0.246  Sum_probs=87.5

Q ss_pred             CCCCEEEEEcCcccHHHHHhc---cceEEEeccC----------CCCcEEEccC-CCCCCC-CCCccEEEEcccccCCCH
Q 022592          140 SPSLVIADFGCGDARLAKSVK---NKVFSFDLVS----------NDPSVIACDM-SNTPLN-SSSVDVAVFCLSLMGINF  204 (294)
Q Consensus       140 ~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~----------~~~~~~~~d~-~~lp~~-~~~fD~Vi~~~~l~~~~~  204 (294)
                      .++.+|||||||+|.++..++   ..|+|+|+|+          .++.++++|+ ..+|++ +++||+|+++     .++
T Consensus        47 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~-----~~~  121 (226)
T 3m33_A           47 TPQTRVLEAGCGHGPDAARFGPQAARWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSR-----RGP  121 (226)
T ss_dssp             CTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEE-----SCC
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeC-----CCH
Confidence            366799999999999999887   3899999997          4789999999 578888 8899999987     467


Q ss_pred             HHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEEec
Q 022592          205 PNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSKDF  258 (294)
Q Consensus       205 ~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  258 (294)
                      ..++.++.++|+|||.|+..  ..       ..+...+...+.++||.+.....
T Consensus       122 ~~~l~~~~~~LkpgG~l~~~--~~-------~~~~~~~~~~l~~~Gf~~~~~~~  166 (226)
T 3m33_A          122 TSVILRLPELAAPDAHFLYV--GP-------RLNVPEVPERLAAVGWDIVAEDH  166 (226)
T ss_dssp             SGGGGGHHHHEEEEEEEEEE--ES-------SSCCTHHHHHHHHTTCEEEEEEE
T ss_pred             HHHHHHHHHHcCCCcEEEEe--CC-------cCCHHHHHHHHHHCCCeEEEEEe
Confidence            78999999999999999921  11       12457899999999999887554

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.56  E-value=3.1e-14  Score=126.82  Aligned_cols=123  Identities=20%  Similarity=0.232  Sum_probs=95.4

Q ss_pred             HHHHHhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccCC--------------CCcEEEccCCCCCCCCCCccEE
Q 022592          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVSN--------------DPSVIACDMSNTPLNSSSVDVA  193 (294)
Q Consensus       131 ~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~~--------------~~~~~~~d~~~lp~~~~~fD~V  193 (294)
                      .+++.+... ++.+|||||||+|.++..++   ..|+|+|+|+.              ++.++.+|+..+++ +++||+|
T Consensus       111 ~~~~~~~~~-~~~~vLD~GcG~G~~~~~l~~~g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~i  188 (286)
T 3m70_A          111 DVVDAAKII-SPCKVLDLGCGQGRNSLYLSLLGYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAANI-QENYDFI  188 (286)
T ss_dssp             HHHHHHHHS-CSCEEEEESCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCC-CSCEEEE
T ss_pred             HHHHHhhcc-CCCcEEEECCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccc-cCCccEE
Confidence            345555544 66799999999999998887   38999999971              67899999998887 7889999


Q ss_pred             EEcccccCCC---HHHHHHHHHHhcCcCcEEEEEeecCCCCC-----CCCCCCHHHHHHHHHHCCCeEEEEe
Q 022592          194 VFCLSLMGIN---FPNYLQEAQRVLKPSGWLLIAEVKSRFDP-----NTGGADPNKFSKAVCDLGFAPVSKD  257 (294)
Q Consensus       194 i~~~~l~~~~---~~~~l~el~r~LkpgG~l~i~e~~~~~~~-----~~~~~~~~~~~~~l~~~Gf~~~~~~  257 (294)
                      +++.+++|.+   ...++.++.++|+|||.++++........     ....++.+++..++..  |+++...
T Consensus       189 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~  258 (286)
T 3m70_A          189 VSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPCPLPFSFTFAENELKEYYKD--WEFLEYN  258 (286)
T ss_dssp             EECSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCSSCCSCCBCTTHHHHHTTT--SEEEEEE
T ss_pred             EEccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCCCCCCCCccccCCHHHHHHHhcC--CEEEEEE
Confidence            9999999863   45899999999999999887654322111     1223577888888864  8887754

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=99.56  E-value=6.4e-14  Score=128.92  Aligned_cols=126  Identities=17%  Similarity=0.192  Sum_probs=97.9

Q ss_pred             CCCEEEEEcCcccHHHHHhc-----cceEEEeccC--------CCCcEEEccCCCCCCCCCCccEEEEcccccCC-CHH-
Q 022592          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS--------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGI-NFP-  205 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~--------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~-~~~-  205 (294)
                      +..+|||||||+|.++..++     .+++++|+..        .++.++.+|+.. +++.  ||+|++..+|||. +.. 
T Consensus       188 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~-~~p~--~D~v~~~~~lh~~~d~~~  264 (352)
T 1fp2_A          188 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMFT-SIPN--ADAVLLKYILHNWTDKDC  264 (352)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCBTTEEEEECCTTT-CCCC--CSEEEEESCGGGSCHHHH
T ss_pred             cCceEEEeCCCccHHHHHHHHHCCCCeEEEeeCHHHHhhcccCCCcEEEeccccC-CCCC--ccEEEeehhhccCCHHHH
Confidence            45799999999999998886     2699999822        357889999976 5553  9999999999985 444 


Q ss_pred             -HHHHHHHHhcCc---CcEEEEEeecCCCCC-------------------CCCCCCHHHHHHHHHHCCCeEEEEeccCCe
Q 022592          206 -NYLQEAQRVLKP---SGWLLIAEVKSRFDP-------------------NTGGADPNKFSKAVCDLGFAPVSKDFSNKM  262 (294)
Q Consensus       206 -~~l~el~r~Lkp---gG~l~i~e~~~~~~~-------------------~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~  262 (294)
                       .+++++.++|+|   ||+++|.++......                   ....++.+++.++++++||+++........
T Consensus       265 ~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~  344 (352)
T 1fp2_A          265 LRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEAGFQHYKISPLTGF  344 (352)
T ss_dssp             HHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHHHHHHTTCCEEEEEEEETT
T ss_pred             HHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHHHhccCCCCCHHHHHHHHHHCCCCeeEEEecCCC
Confidence             899999999999   999999875422111                   012257899999999999999886555555


Q ss_pred             EEEEEEE
Q 022592          263 FIMFYFK  269 (294)
Q Consensus       263 f~~i~~~  269 (294)
                      ..+++++
T Consensus       345 ~~vie~~  351 (352)
T 1fp2_A          345 LSLIEIY  351 (352)
T ss_dssp             EEEEEEE
T ss_pred             cEEEEEe
Confidence            6677665

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.55  E-value=1.6e-14  Score=129.76  Aligned_cols=85  Identities=15%  Similarity=0.251  Sum_probs=76.6

Q ss_pred             CCCEEEEEcCcccHHHHHhc------cceEEEeccC-----------------CCCcEEEccCCCCCCCC------CCcc
Q 022592          141 PSLVIADFGCGDARLAKSVK------NKVFSFDLVS-----------------NDPSVIACDMSNTPLNS------SSVD  191 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~-----------------~~~~~~~~d~~~lp~~~------~~fD  191 (294)
                      ++.+|||||||+|.++..++      ..|+|+|+|+                 .++.++++|+.++++++      ++||
T Consensus        36 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  115 (299)
T 3g5t_A           36 ERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKID  115 (299)
T ss_dssp             CCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCee
Confidence            56799999999999988776      2799999986                 26789999999988877      8999


Q ss_pred             EEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEe
Q 022592          192 VAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAE  225 (294)
Q Consensus       192 ~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e  225 (294)
                      +|++..+++|.++..++.++.++|+|||.|++.+
T Consensus       116 ~V~~~~~l~~~~~~~~l~~~~~~LkpgG~l~i~~  149 (299)
T 3g5t_A          116 MITAVECAHWFDFEKFQRSAYANLRKDGTIAIWG  149 (299)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEeHhhHHHHhCHHHHHHHHHHhcCCCcEEEEEe
Confidence            9999999999999999999999999999999954

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.53  E-value=3.9e-14  Score=119.96  Aligned_cols=119  Identities=16%  Similarity=0.193  Sum_probs=96.0

Q ss_pred             CCCEEEEEcCcccHHHHHhc----cceEEEeccC---------------CCCcEEEccCCCCCCCCCCccEEEEcccccC
Q 022592          141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMG  201 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~---------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~  201 (294)
                      ++.+|||||||+|.++..++    ..|+|+|+++               .++.++.+|+.+.+  +++||+|+++..+++
T Consensus        60 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--~~~fD~i~~~~~~~~  137 (205)
T 3grz_A           60 KPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADV--DGKFDLIVANILAEI  137 (205)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTC--CSCEEEEEEESCHHH
T ss_pred             CCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccC--CCCceEEEECCcHHH
Confidence            56799999999999988876    3799999997               23889999987643  578999999877765


Q ss_pred             CCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEEeccCCeEEEEEEEEC
Q 022592          202 INFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSKDFSNKMFIMFYFKKK  271 (294)
Q Consensus       202 ~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~f~~i~~~k~  271 (294)
                        ...+++++.++|+|||.+++.++...        +.+.+..+++++||+++.......++.++..++.
T Consensus       138 --~~~~l~~~~~~L~~gG~l~~~~~~~~--------~~~~~~~~~~~~Gf~~~~~~~~~~w~~~~~~~~~  197 (205)
T 3grz_A          138 --LLDLIPQLDSHLNEDGQVIFSGIDYL--------QLPKIEQALAENSFQIDLKMRAGRWIGLAISRKH  197 (205)
T ss_dssp             --HHHHGGGSGGGEEEEEEEEEEEEEGG--------GHHHHHHHHHHTTEEEEEEEEETTEEEEEEEECC
T ss_pred             --HHHHHHHHHHhcCCCCEEEEEecCcc--------cHHHHHHHHHHcCCceEEeeccCCEEEEEEeccc
Confidence              47889999999999999999865533        4588999999999999987776665555555443

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.52  E-value=1.4e-13  Score=120.10  Aligned_cols=83  Identities=17%  Similarity=0.321  Sum_probs=69.0

Q ss_pred             CCCEEEEEcCcccHHHHHhc---cceEEEeccC--------------CCCcEEEccCCCCCCCCCCccEEEEccc-ccCC
Q 022592          141 PSLVIADFGCGDARLAKSVK---NKVFSFDLVS--------------NDPSVIACDMSNTPLNSSSVDVAVFCLS-LMGI  202 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~--------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~-l~~~  202 (294)
                      ++.+|||||||+|.++..++   ..|+|+|+|+              .++.++.+|+..++++ ++||+|++..+ +++.
T Consensus        41 ~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~~~~~~  119 (252)
T 1wzn_A           41 EVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFK-NEFDAVTMFFSTIMYF  119 (252)
T ss_dssp             CCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCC-SCEEEEEECSSGGGGS
T ss_pred             CCCEEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccC-CCccEEEEcCCchhcC
Confidence            55799999999999998887   3899999997              2578999999988865 67999998744 4443


Q ss_pred             ---CHHHHHHHHHHhcCcCcEEEEE
Q 022592          203 ---NFPNYLQEAQRVLKPSGWLLIA  224 (294)
Q Consensus       203 ---~~~~~l~el~r~LkpgG~l~i~  224 (294)
                         +...+++++.++|+|||.+++.
T Consensus       120 ~~~~~~~~l~~~~~~L~pgG~li~~  144 (252)
T 1wzn_A          120 DEEDLRKLFSKVAEALKPGGVFITD  144 (252)
T ss_dssp             CHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CHHHHHHHHHHHHHHcCCCeEEEEe
Confidence               4678999999999999999874

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.52  E-value=7.2e-14  Score=120.89  Aligned_cols=125  Identities=18%  Similarity=0.114  Sum_probs=90.4

Q ss_pred             CCCEEEEEcCcccHHHHHhc-----cceEEEeccC-------------CCCcEEEccCCC----CCCCCCCccEEEEccc
Q 022592          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS-------------NDPSVIACDMSN----TPLNSSSVDVAVFCLS  198 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~-------------~~~~~~~~d~~~----lp~~~~~fD~Vi~~~~  198 (294)
                      ++.+|||||||+|.++..++     ..|+|+|+|+             .++.++.+|+..    .++. ++||+|++.  
T Consensus        74 ~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~-~~~D~v~~~--  150 (230)
T 1fbn_A           74 RDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIV-EKVDVIYED--  150 (230)
T ss_dssp             TTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTS-CCEEEEEEC--
T ss_pred             CCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccC-ccEEEEEEe--
Confidence            56799999999999888775     4799999997             367788999987    7766 789999821  


Q ss_pred             ccCCCH---HHHHHHHHHhcCcCcEEEEEeecCCCCCCCC---CCCHHHHHHHHHHCCCeEEEEeccCC---eEEEEEEE
Q 022592          199 LMGINF---PNYLQEAQRVLKPSGWLLIAEVKSRFDPNTG---GADPNKFSKAVCDLGFAPVSKDFSNK---MFIMFYFK  269 (294)
Q Consensus       199 l~~~~~---~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~---~~~~~~~~~~l~~~Gf~~~~~~~~~~---~f~~i~~~  269 (294)
                        ..++   ..++.++.++|+|||.++++ +.....+...   .+...++. +|+++||+++.......   .+++++++
T Consensus       151 --~~~~~~~~~~l~~~~~~LkpgG~l~i~-~~~~~~~~~~~~~~~~~~~l~-~l~~~Gf~~~~~~~~~~~~~~~~~v~~~  226 (230)
T 1fbn_A          151 --VAQPNQAEILIKNAKWFLKKGGYGMIA-IKARSIDVTKDPKEIFKEQKE-ILEAGGFKIVDEVDIEPFEKDHVMFVGI  226 (230)
T ss_dssp             --CCSTTHHHHHHHHHHHHEEEEEEEEEE-EEGGGTCSSSCHHHHHHHHHH-HHHHHTEEEEEEEECTTTSTTEEEEEEE
T ss_pred             --cCChhHHHHHHHHHHHhCCCCcEEEEE-EecCCCCCCCCHHHhhHHHHH-HHHHCCCEEEEEEccCCCccceEEEEEE
Confidence              1344   67799999999999999997 4322211111   11235666 88999999887544333   36777777


Q ss_pred             ECC
Q 022592          270 KKE  272 (294)
Q Consensus       270 k~~  272 (294)
                      |.+
T Consensus       227 k~~  229 (230)
T 1fbn_A          227 WEG  229 (230)
T ss_dssp             ECC
T ss_pred             eCC
Confidence            753

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.52  E-value=5.3e-14  Score=117.04  Aligned_cols=130  Identities=15%  Similarity=0.201  Sum_probs=97.9

Q ss_pred             HHHHHHhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccC---------------CC--CcEEEccCCCCCCCCCC
Q 022592          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS---------------ND--PSVIACDMSNTPLNSSS  189 (294)
Q Consensus       130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~---------------~~--~~~~~~d~~~lp~~~~~  189 (294)
                      ..+++.+... ++.+|||+|||+|.++..++   ..++|+|+++               .+  +.++.+|+.. ++++++
T Consensus        42 ~~l~~~~~~~-~~~~vLdiG~G~G~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~  119 (194)
T 1dus_A           42 KILVENVVVD-KDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE-NVKDRK  119 (194)
T ss_dssp             HHHHHHCCCC-TTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT-TCTTSC
T ss_pred             HHHHHHcccC-CCCeEEEeCCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhc-ccccCC
Confidence            4466666544 66799999999999998887   4899999987               23  7889999877 345678


Q ss_pred             ccEEEEcccccCC--CHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEEeccCCeEEEEE
Q 022592          190 VDVAVFCLSLMGI--NFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSKDFSNKMFIMFY  267 (294)
Q Consensus       190 fD~Vi~~~~l~~~--~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~f~~i~  267 (294)
                      ||+|++...+++.  +...++.++.++|+|||.+++.......        ..++...+++. |..++.......|+++.
T Consensus       120 ~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~--------~~~~~~~l~~~-~~~~~~~~~~~~~~~~~  190 (194)
T 1dus_A          120 YNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQTKQG--------AKSLAKYMKDV-FGNVETVTIKGGYRVLK  190 (194)
T ss_dssp             EEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEESTHH--------HHHHHHHHHHH-HSCCEEEEEETTEEEEE
T ss_pred             ceEEEECCCcccchhHHHHHHHHHHHHcCCCCEEEEEECCCCC--------hHHHHHHHHHH-hcceEEEecCCcEEEEE
Confidence            9999999988873  5679999999999999999998765422        24577777776 54444334445567777


Q ss_pred             EEE
Q 022592          268 FKK  270 (294)
Q Consensus       268 ~~k  270 (294)
                      ++|
T Consensus       191 ~~k  193 (194)
T 1dus_A          191 SKK  193 (194)
T ss_dssp             EEC
T ss_pred             Eee
Confidence            665

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.52  E-value=8.3e-15  Score=131.56  Aligned_cols=117  Identities=17%  Similarity=0.258  Sum_probs=89.7

Q ss_pred             CCCEEEEEcCcccHHHHHhc-----cceEEEeccC---------------------------------------------
Q 022592          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------------------------------------  170 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~---------------------------------------------  170 (294)
                      ++.+|||||||+|.++..++     ..|+|+|+++                                             
T Consensus        46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (292)
T 3g07_A           46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC  125 (292)
T ss_dssp             TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred             CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence            56799999999999988876     3799999986                                             


Q ss_pred             ----------------------------CCCcEEEccCCCCC-----CCCCCccEEEEcccccCC-------CHHHHHHH
Q 022592          171 ----------------------------NDPSVIACDMSNTP-----LNSSSVDVAVFCLSLMGI-------NFPNYLQE  210 (294)
Q Consensus       171 ----------------------------~~~~~~~~d~~~lp-----~~~~~fD~Vi~~~~l~~~-------~~~~~l~e  210 (294)
                                                  .++.++.+|+...+     +.+++||+|++..+++|.       ++..++++
T Consensus       126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~  205 (292)
T 3g07_A          126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRR  205 (292)
T ss_dssp             ----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHH
Confidence                                        15778888887644     567899999999999764       67789999


Q ss_pred             HHHhcCcCcEEEEEeecCCCC-C--C----------CCCCCHHHHHHHHHH--CCCeEEEEe
Q 022592          211 AQRVLKPSGWLLIAEVKSRFD-P--N----------TGGADPNKFSKAVCD--LGFAPVSKD  257 (294)
Q Consensus       211 l~r~LkpgG~l~i~e~~~~~~-~--~----------~~~~~~~~~~~~l~~--~Gf~~~~~~  257 (294)
                      ++++|+|||.|++........ .  .          ...+.++++..+|.+  +||+.++..
T Consensus       206 ~~~~LkpGG~lil~~~~~~~y~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~~~~GF~~~~~~  267 (292)
T 3g07_A          206 IYRHLRPGGILVLEPQPWSSYGKRKTLTETIYKNYYRIQLKPEQFSSYLTSPDVGFSSYELV  267 (292)
T ss_dssp             HHHHEEEEEEEEEECCCHHHHHTTTTSCHHHHHHHHHCCCCGGGHHHHHTSTTTCCCEEEEC
T ss_pred             HHHHhCCCcEEEEecCCchhhhhhhcccHHHHhhhhcEEEcHHHHHHHHHhcCCCceEEEEe
Confidence            999999999999963211000 0  0          011457889999998  999877643

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=99.52  E-value=2.9e-13  Score=124.82  Aligned_cols=127  Identities=15%  Similarity=0.217  Sum_probs=99.5

Q ss_pred             CCCEEEEEcCcccHHHHHhcc-----ceEEEeccC--------CCCcEEEccCCCCCCCCCCccEEEEcccccCC-CHH-
Q 022592          141 PSLVIADFGCGDARLAKSVKN-----KVFSFDLVS--------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGI-NFP-  205 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~~-----~v~gvD~s~--------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~-~~~-  205 (294)
                      +..+|||||||+|.++..++.     .++++|++.        .++.++.+|+.. +++  .||+|++..+||+. +.. 
T Consensus       193 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~-~~~--~~D~v~~~~vlh~~~d~~~  269 (358)
T 1zg3_A          193 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNFVGGDMFK-SIP--SADAVLLKWVLHDWNDEQS  269 (358)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECHHHHSSCCCCSSEEEEECCTTT-CCC--CCSEEEEESCGGGSCHHHH
T ss_pred             CCCEEEEECCCcCHHHHHHHHHCCCCeEEEeccHHHHhhcccCCCcEEEeCccCC-CCC--CceEEEEcccccCCCHHHH
Confidence            456999999999999988862     688999853        357889999987 665  49999999999985 544 


Q ss_pred             -HHHHHHHHhcCc---CcEEEEEeecCCCCCC--------------------CCCCCHHHHHHHHHHCCCeEEEEeccCC
Q 022592          206 -NYLQEAQRVLKP---SGWLLIAEVKSRFDPN--------------------TGGADPNKFSKAVCDLGFAPVSKDFSNK  261 (294)
Q Consensus       206 -~~l~el~r~Lkp---gG~l~i~e~~~~~~~~--------------------~~~~~~~~~~~~l~~~Gf~~~~~~~~~~  261 (294)
                       .+++++.++|+|   ||.++|.++.......                    ...++.+++.++++++||+++.......
T Consensus       270 ~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~  349 (358)
T 1zg3_A          270 LKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFLGKERTKQEWEKLIYDAGFSSYKITPISG  349 (358)
T ss_dssp             HHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCCEEEEEEETT
T ss_pred             HHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHhccCCCCCCCHHHHHHHHHHcCCCeeEEEecCC
Confidence             999999999999   9999998754221111                    1225889999999999999988665556


Q ss_pred             eEEEEEEEE
Q 022592          262 MFIMFYFKK  270 (294)
Q Consensus       262 ~f~~i~~~k  270 (294)
                      ...++++++
T Consensus       350 ~~~vie~~~  358 (358)
T 1zg3_A          350 FKSLIEVYP  358 (358)
T ss_dssp             TEEEEEEEC
T ss_pred             CcEEEEEeC
Confidence            667777653

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.51  E-value=2.3e-14  Score=119.39  Aligned_cols=120  Identities=14%  Similarity=0.130  Sum_probs=79.3

Q ss_pred             CCCCEEEEEcCcccHHHHHhc---cceEEEeccC---------------CCCcEEEccCCCCC-CCCCCccEEEEcc-cc
Q 022592          140 SPSLVIADFGCGDARLAKSVK---NKVFSFDLVS---------------NDPSVIACDMSNTP-LNSSSVDVAVFCL-SL  199 (294)
Q Consensus       140 ~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~---------------~~~~~~~~d~~~lp-~~~~~fD~Vi~~~-~l  199 (294)
                      .++.+|||+|||+|.++..++   .+|+|+|+|+               .++.++..++..++ +.+++||+|+++. .+
T Consensus        21 ~~~~~vLDiGcG~G~~~~~la~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~~~~  100 (185)
T 3mti_A           21 DDESIVVDATMGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNLGYL  100 (185)
T ss_dssp             CTTCEEEESCCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEEC--
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeCCCC
Confidence            367799999999999999887   4899999997               35778887777643 4467899999874 33


Q ss_pred             cC---------CCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEEecc
Q 022592          200 MG---------INFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSKDFS  259 (294)
Q Consensus       200 ~~---------~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~  259 (294)
                      ++         .+...++.++.++|+|||.++++.+...............+...+...+|.+....+.
T Consensus       101 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  169 (185)
T 3mti_A          101 PSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYGHDGGDMEKDAVLEYVIGLDQRVFTAMLYQPL  169 (185)
T ss_dssp             ---------CHHHHHHHHHHHHHHEEEEEEEEEEEC------CHHHHHHHHHHHHSCTTTEEEEEEEES
T ss_pred             CCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEehhh
Confidence            22         1235788999999999999999865432111000011223333444566888775554

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.51  E-value=9.2e-14  Score=119.02  Aligned_cols=124  Identities=14%  Similarity=0.128  Sum_probs=86.5

Q ss_pred             CCCEEEEEcCcccHHHHHhc-----cceEEEeccC-------------CCCcEEEccCCCC----CCCCCCccEEEEccc
Q 022592          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS-------------NDPSVIACDMSNT----PLNSSSVDVAVFCLS  198 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~-------------~~~~~~~~d~~~l----p~~~~~fD~Vi~~~~  198 (294)
                      ++.+|||||||+|.++..++     ..|+|+|+|+             .++.++.+|+...    ++. ++||+|++.. 
T Consensus        57 ~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~-~~fD~V~~~~-  134 (210)
T 1nt2_A           57 GDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIV-EKVDLIYQDI-  134 (210)
T ss_dssp             SSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTC-CCEEEEEECC-
T ss_pred             CCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccc-cceeEEEEec-
Confidence            67799999999999887765     4799999997             3567778888763    444 7899999873 


Q ss_pred             ccCCCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHH----HHHHHCCCeEEEEecc---CCeEEEEEEEE
Q 022592          199 LMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFS----KAVCDLGFAPVSKDFS---NKMFIMFYFKK  270 (294)
Q Consensus       199 l~~~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~----~~l~~~Gf~~~~~~~~---~~~f~~i~~~k  270 (294)
                      ..+.....++.++.++|||||.|+++......   ....+.+++.    +.++++ |++++....   ...+++++++|
T Consensus       135 ~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~---~~~~~~~~~~~~~~~~l~~~-f~~~~~~~~~p~~~~h~~~~~~~  209 (210)
T 1nt2_A          135 AQKNQIEILKANAEFFLKEKGEVVIMVKARSI---DSTAEPEEVFKSVLKEMEGD-FKIVKHGSLMPYHRDHIFIHAYR  209 (210)
T ss_dssp             CSTTHHHHHHHHHHHHEEEEEEEEEEEEHHHH---CTTSCHHHHHHHHHHHHHTT-SEEEEEEECTTTCTTEEEEEEEE
T ss_pred             cChhHHHHHHHHHHHHhCCCCEEEEEEecCCc---cccCCHHHHHHHHHHHHHhh-cEEeeeecCCCCCCCcEEEEEEc
Confidence            22223445689999999999999998322111   1123445542    337888 999885433   33456777665

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.50  E-value=3.3e-15  Score=130.22  Aligned_cols=116  Identities=16%  Similarity=0.140  Sum_probs=82.1

Q ss_pred             CCCEEEEEcCcccHHHHHhc----cceEEEeccC--------------CCCcEEEccCCC--CCCCCCCccEEEEc----
Q 022592          141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVS--------------NDPSVIACDMSN--TPLNSSSVDVAVFC----  196 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~--------------~~~~~~~~d~~~--lp~~~~~fD~Vi~~----  196 (294)
                      ++.+|||||||+|..+..++    ..++|+|+|+              .++.++.+|+..  .++++++||.|++.    
T Consensus        60 ~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~~~  139 (236)
T 3orh_A           60 KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYPL  139 (236)
T ss_dssp             TCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCCC
T ss_pred             CCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEEeeeec
Confidence            67799999999999998886    3789999998              245567777654  35778899999853    


Q ss_pred             -ccccCC-CHHHHHHHHHHhcCcCcEEEEEeecCC---CCCCCC---CCCHHHHHHHHHHCCCeEEEE
Q 022592          197 -LSLMGI-NFPNYLQEAQRVLKPSGWLLIAEVKSR---FDPNTG---GADPNKFSKAVCDLGFAPVSK  256 (294)
Q Consensus       197 -~~l~~~-~~~~~l~el~r~LkpgG~l~i~e~~~~---~~~~~~---~~~~~~~~~~l~~~Gf~~~~~  256 (294)
                       .+++|. ++..+++++.|+|||||+|++.+....   ......   ......+...|.++||+++.+
T Consensus       140 ~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~eaGF~~~~i  207 (236)
T 3orh_A          140 SEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKSKYSDITIMFEETQVPALLEAGFRRENI  207 (236)
T ss_dssp             BGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHHHHHHHTTTTCSCHHHHHHHHTHHHHHHHTCCGGGE
T ss_pred             ccchhhhcchhhhhhhhhheeCCCCEEEEEecCCchhhhhhhhhhhhhhhHHHHHHHHHHcCCeEEEE
Confidence             333443 788999999999999999988642211   000000   012345567788899986543

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.50  E-value=4.8e-13  Score=115.14  Aligned_cols=127  Identities=17%  Similarity=0.139  Sum_probs=95.2

Q ss_pred             CCCCEEEEEcCc-ccHHHHHhc----cceEEEeccC--------------CCCcEEEccCCC-CCCCCCCccEEEEcccc
Q 022592          140 SPSLVIADFGCG-DARLAKSVK----NKVFSFDLVS--------------NDPSVIACDMSN-TPLNSSSVDVAVFCLSL  199 (294)
Q Consensus       140 ~~~~~VLDiGcG-~G~~~~~l~----~~v~gvD~s~--------------~~~~~~~~d~~~-lp~~~~~fD~Vi~~~~l  199 (294)
                      .++.+|||+||| +|.++..++    ..|+|+|+++              .++.++.+|+.. .++++++||+|+++..+
T Consensus        54 ~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~npp~  133 (230)
T 3evz_A           54 RGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAPPY  133 (230)
T ss_dssp             CSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECCCC
T ss_pred             CCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECCCC
Confidence            367799999999 999988776    4799999997              157899999753 34556899999998776


Q ss_pred             cCCC--------------------HHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEEec-
Q 022592          200 MGIN--------------------FPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSKDF-  258 (294)
Q Consensus       200 ~~~~--------------------~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~-  258 (294)
                      ++..                    ...++.++.++|+|||.+++......       .....+.+++++.||.+....+ 
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~-------~~~~~~~~~l~~~g~~~~~~~~~  206 (230)
T 3evz_A          134 YDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKE-------KLLNVIKERGIKLGYSVKDIKFK  206 (230)
T ss_dssp             C---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCH-------HHHHHHHHHHHHTTCEEEEEEEC
T ss_pred             cCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccH-------hHHHHHHHHHHHcCCceEEEEec
Confidence            5531                    37899999999999999999643221       1347888999999998877544 


Q ss_pred             -cCCeEEEEEEEECCc
Q 022592          259 -SNKMFIMFYFKKKEK  273 (294)
Q Consensus       259 -~~~~f~~i~~~k~~~  273 (294)
                       ......++.|.|...
T Consensus       207 ~g~~~~~~l~f~~~~~  222 (230)
T 3evz_A          207 VGTRWRHSLIFFKGIS  222 (230)
T ss_dssp             CCC-CEEEEEEECCC-
T ss_pred             CCCeEEEEEEEecccc
Confidence             455577777877543

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.50  E-value=1.8e-13  Score=119.17  Aligned_cols=124  Identities=15%  Similarity=0.106  Sum_probs=93.9

Q ss_pred             CCCEEEEEcCcccHHHHHhc-----cceEEEeccC---------------CCCcEEEccCCCCCCC---CCCccEEEEcc
Q 022592          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSNTPLN---SSSVDVAVFCL  197 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~---------------~~~~~~~~d~~~lp~~---~~~fD~Vi~~~  197 (294)
                      ++.+|||||||+|.++..++     ..|+|+|+|+               .++.++.+|+.+++++   +++||+|++..
T Consensus        70 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~~  149 (240)
T 1xdz_A           70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTARA  149 (240)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEEC
T ss_pred             CCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEec
Confidence            56799999999999887776     3799999997               3578999999887754   57899999876


Q ss_pred             cccCCCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEEe---c--cCCeEEEEEEEECC
Q 022592          198 SLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSKD---F--SNKMFIMFYFKKKE  272 (294)
Q Consensus       198 ~l~~~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~---~--~~~~f~~i~~~k~~  272 (294)
                      +   .++..++.++.++|+|||.+++..-.. .     .....++...++..||.+....   .  ......++.++|..
T Consensus       150 ~---~~~~~~l~~~~~~LkpgG~l~~~~g~~-~-----~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~~k~~  220 (240)
T 1xdz_A          150 V---ARLSVLSELCLPLVKKNGLFVALKAAS-A-----EEELNAGKKAITTLGGELENIHSFKLPIEESDRNIMVIRKIK  220 (240)
T ss_dssp             C---SCHHHHHHHHGGGEEEEEEEEEEECC--C-----HHHHHHHHHHHHHTTEEEEEEEEEECTTTCCEEEEEEEEECS
T ss_pred             c---CCHHHHHHHHHHhcCCCCEEEEEeCCC-c-----hHHHHHHHHHHHHcCCeEeEEEEEecCCCCCceEEEEEEecC
Confidence            3   578899999999999999999863111 0     0123457778999999887643   1  23567777887765


Q ss_pred             c
Q 022592          273 K  273 (294)
Q Consensus       273 ~  273 (294)
                      .
T Consensus       221 ~  221 (240)
T 1xdz_A          221 N  221 (240)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.49  E-value=4.8e-15  Score=128.69  Aligned_cols=113  Identities=18%  Similarity=0.172  Sum_probs=83.9

Q ss_pred             CCCEEEEEcCcccHHHHHhcc----ceEEEeccC--------------CCCcEEEccCCCC--CCCCCCccEEEE-cccc
Q 022592          141 PSLVIADFGCGDARLAKSVKN----KVFSFDLVS--------------NDPSVIACDMSNT--PLNSSSVDVAVF-CLSL  199 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~~----~v~gvD~s~--------------~~~~~~~~d~~~l--p~~~~~fD~Vi~-~~~l  199 (294)
                      ++.+|||||||+|.++..++.    .|+|+|+|+              .++.++.+|+.++  ++++++||+|++ .+++
T Consensus        60 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~~~  139 (236)
T 1zx0_A           60 KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYPL  139 (236)
T ss_dssp             TCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCCC
T ss_pred             CCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCccc
Confidence            567999999999999988863    799999997              2467889999887  888899999999 5554


Q ss_pred             cC--C---CHHHHHHHHHHhcCcCcEEEEEeecCCC---CCCCCC---CCHHHHHHHHHHCCCeE
Q 022592          200 MG--I---NFPNYLQEAQRVLKPSGWLLIAEVKSRF---DPNTGG---ADPNKFSKAVCDLGFAP  253 (294)
Q Consensus       200 ~~--~---~~~~~l~el~r~LkpgG~l~i~e~~~~~---~~~~~~---~~~~~~~~~l~~~Gf~~  253 (294)
                      ..  .   ++..++.++.++|||||.|++.++....   ......   ...+.....|.++||.+
T Consensus       140 ~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~  204 (236)
T 1zx0_A          140 SEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKSKYSDITIMFEETQVPALLEAGFRR  204 (236)
T ss_dssp             BGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHHHHHHHTTTTCSCHHHHHHHHTHHHHHHTTCCG
T ss_pred             chhhhhhhhHHHHHHHHHHhcCCCeEEEEEecCcHHHhhchhhhhhhhhccHHHHHHHHHCCCCC
Confidence            21  2   3457899999999999999987644221   110010   11245567789999975

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.49  E-value=5.8e-14  Score=120.03  Aligned_cols=125  Identities=16%  Similarity=0.191  Sum_probs=89.7

Q ss_pred             HHHHhhccCCCCEEEEEcCcccHHHHHhc-----cceEEEeccCC-------------------CCcEEEccCCCCCCCC
Q 022592          132 IVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVSN-------------------DPSVIACDMSNTPLNS  187 (294)
Q Consensus       132 ~~~~l~~~~~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~~-------------------~~~~~~~d~~~lp~~~  187 (294)
                      .+..+... ++.+|||||||+|.++..++     ..|+|+|+|+.                   ++.++++|+.++|+++
T Consensus        19 ~~~~l~~~-~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~   97 (218)
T 3mq2_A           19 EFEQLRSQ-YDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLS   97 (218)
T ss_dssp             HHHHHHTT-SSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCC
T ss_pred             HHHHhhcc-CCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCC
Confidence            34444433 66799999999999998886     37999999983                   5678999999999887


Q ss_pred             CCccEEEEccc---cc--C-CCHHHHHHHHHHhcCcCcEEEEEeecCCCCC------CCCCCC----HHHHHHHHHHCCC
Q 022592          188 SSVDVAVFCLS---LM--G-INFPNYLQEAQRVLKPSGWLLIAEVKSRFDP------NTGGAD----PNKFSKAVCDLGF  251 (294)
Q Consensus       188 ~~fD~Vi~~~~---l~--~-~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~------~~~~~~----~~~~~~~l~~~Gf  251 (294)
                      ++ |.|+....   ++  | .++..+++++.++|||||.+++..-...+.+      ..+.++    .+.+..++.++||
T Consensus        98 ~~-d~v~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf  176 (218)
T 3mq2_A           98 GV-GELHVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVALNLHAWRPSVPEVGEHPEPTPDSADEWLAPRYAEAGW  176 (218)
T ss_dssp             CE-EEEEEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEEEGGGBTTBCGGGTTCCCCCHHHHHHHHHHHHHHTTE
T ss_pred             CC-CEEEEEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEeccccccccccccccCCccchHHHHHHHHHHHHHcCC
Confidence            76 77763332   21  3 4668999999999999999999632221111      111222    3447779999999


Q ss_pred             eEEEEec
Q 022592          252 APVSKDF  258 (294)
Q Consensus       252 ~~~~~~~  258 (294)
                      ++.....
T Consensus       177 ~i~~~~~  183 (218)
T 3mq2_A          177 KLADCRY  183 (218)
T ss_dssp             EEEEEEE
T ss_pred             Cceeeec
Confidence            9988654

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.49  E-value=3.3e-13  Score=114.20  Aligned_cols=112  Identities=16%  Similarity=0.214  Sum_probs=89.0

Q ss_pred             HHHHHhhccCCCCEEEEEcCcccHHHHHhc-----cceEEEeccC---------------CCCcEEEccCCCCCCCCCCc
Q 022592          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSV  190 (294)
Q Consensus       131 ~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~---------------~~~~~~~~d~~~lp~~~~~f  190 (294)
                      .++..+... ++.+|||||||+|.++..++     ..|+|+|+++               .++.++.+|+.......++|
T Consensus        31 ~~l~~l~~~-~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  109 (204)
T 3e05_A           31 VTLSKLRLQ-DDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPDP  109 (204)
T ss_dssp             HHHHHTTCC-TTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCCC
T ss_pred             HHHHHcCCC-CCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCCC
Confidence            345555444 67799999999999988776     3799999997               36788899986654444779


Q ss_pred             cEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeE
Q 022592          191 DVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAP  253 (294)
Q Consensus       191 D~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~  253 (294)
                      |+|++..+++  +...++.++.++|+|||.+++......        +.+.+..+++++||.+
T Consensus       110 D~i~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~--------~~~~~~~~l~~~g~~~  162 (204)
T 3e05_A          110 DRVFIGGSGG--MLEEIIDAVDRRLKSEGVIVLNAVTLD--------TLTKAVEFLEDHGYMV  162 (204)
T ss_dssp             SEEEESCCTT--CHHHHHHHHHHHCCTTCEEEEEECBHH--------HHHHHHHHHHHTTCEE
T ss_pred             CEEEECCCCc--CHHHHHHHHHHhcCCCeEEEEEecccc--------cHHHHHHHHHHCCCce
Confidence            9999988775  888999999999999999999754321        3477889999999943

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.48  E-value=2.4e-13  Score=119.70  Aligned_cols=132  Identities=11%  Similarity=0.138  Sum_probs=98.3

Q ss_pred             HHHHhhccC-CCCEEEEEcCcccHHHHHhc----cceEEEeccC----------------CCCcEEEccCCCCC--CCCC
Q 022592          132 IVKWLKDHS-PSLVIADFGCGDARLAKSVK----NKVFSFDLVS----------------NDPSVIACDMSNTP--LNSS  188 (294)
Q Consensus       132 ~~~~l~~~~-~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~----------------~~~~~~~~d~~~lp--~~~~  188 (294)
                      ++..+.... ++.+|||+|||+|.++..++    ..|+|+|+++                .++.++.+|+.+++  ++.+
T Consensus        39 ll~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~  118 (259)
T 3lpm_A           39 LLAKFSYLPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKE  118 (259)
T ss_dssp             HHHHHCCCCSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTT
T ss_pred             HHHHHhcCCCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccC
Confidence            333343444 56799999999999998886    2799999987                25789999998865  5578


Q ss_pred             CccEEEEcccccCC---------------------CHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHH
Q 022592          189 SVDVAVFCLSLMGI---------------------NFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVC  247 (294)
Q Consensus       189 ~fD~Vi~~~~l~~~---------------------~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~  247 (294)
                      +||+|+++..+...                     +...++..+.++|+|||.++++..         .....++...+.
T Consensus       119 ~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~---------~~~~~~~~~~l~  189 (259)
T 3lpm_A          119 RADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHR---------PERLLDIIDIMR  189 (259)
T ss_dssp             CEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEEC---------TTTHHHHHHHHH
T ss_pred             CccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEc---------HHHHHHHHHHHH
Confidence            99999997655321                     235799999999999999999531         125588999999


Q ss_pred             HCCCeEEEEec------cCCeEEEEEEEECC
Q 022592          248 DLGFAPVSKDF------SNKMFIMFYFKKKE  272 (294)
Q Consensus       248 ~~Gf~~~~~~~------~~~~f~~i~~~k~~  272 (294)
                      +.||.......      ....+.++.++|..
T Consensus       190 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~k~~  220 (259)
T 3lpm_A          190 KYRLEPKRIQFVHPRSDREANTVLVEGIKDG  220 (259)
T ss_dssp             HTTEEEEEEEEEESSTTSCCSEEEEEEEETC
T ss_pred             HCCCceEEEEEeecCCCCCcEEEEEEEEeCC
Confidence            99998877432      33457778887764

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.48  E-value=4e-13  Score=113.17  Aligned_cols=107  Identities=14%  Similarity=0.206  Sum_probs=82.2

Q ss_pred             CCCCEEEEEcCcccHHHHHhc-------cceEEEeccCC----CCcEEEccCCCCC------------------------
Q 022592          140 SPSLVIADFGCGDARLAKSVK-------NKVFSFDLVSN----DPSVIACDMSNTP------------------------  184 (294)
Q Consensus       140 ~~~~~VLDiGcG~G~~~~~l~-------~~v~gvD~s~~----~~~~~~~d~~~lp------------------------  184 (294)
                      .++.+|||||||+|.++..++       ..|+|+|+|+.    ++.++.+|+...+                        
T Consensus        21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~~~~~v~~~~~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  100 (201)
T 2plw_A           21 KKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMDPIPNVYFIQGEIGKDNMNNIKNINYIDNMNNNSVDYKLKE  100 (201)
T ss_dssp             CTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCCCCTTCEEEECCTTTTSSCCC-----------CHHHHHHHH
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccCCCCCceEEEccccchhhhhhccccccccccchhhHHHHHh
Confidence            366799999999999888775       36999999983    6889999998876                        


Q ss_pred             -CCCCCccEEEEcccccCC-----CH-------HHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCC
Q 022592          185 -LNSSSVDVAVFCLSLMGI-----NF-------PNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGF  251 (294)
Q Consensus       185 -~~~~~fD~Vi~~~~l~~~-----~~-------~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf  251 (294)
                       +++++||+|++..++++.     +.       ..++.++.++|+|||.|++..+..        .+...+...+.. .|
T Consensus       101 ~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~--------~~~~~l~~~l~~-~f  171 (201)
T 2plw_A          101 ILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLG--------SQTNNLKTYLKG-MF  171 (201)
T ss_dssp             HHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECS--------TTHHHHHHHHHT-TE
T ss_pred             hcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCC--------CCHHHHHHHHHH-HH
Confidence             566789999998887763     22       137889999999999999865432        134667777765 47


Q ss_pred             eEEE
Q 022592          252 APVS  255 (294)
Q Consensus       252 ~~~~  255 (294)
                      ..+.
T Consensus       172 ~~v~  175 (201)
T 2plw_A          172 QLVH  175 (201)
T ss_dssp             EEEE
T ss_pred             heEE
Confidence            6555

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.48  E-value=8.8e-14  Score=123.05  Aligned_cols=122  Identities=10%  Similarity=0.015  Sum_probs=84.9

Q ss_pred             HhcChhhHHHHHHhHHhhhccCC-CcHHHHHHHHhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccCC-------
Q 022592          103 FNENPALFDMYHSGYQEQMSHWP-ELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVSN-------  171 (294)
Q Consensus       103 ~~~~~~~~d~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~~-------  171 (294)
                      ++..++.|+.....|......-. ......++..+... ++.+|||||||+|.++..++   ..|+|+|+|+.       
T Consensus         7 ~~s~a~~wd~~a~~f~~~~~~~~~~~~~~~il~~l~l~-~g~~VLDlGcGtG~~a~~La~~g~~V~gvD~S~~ml~~Ar~   85 (261)
T 3iv6_A            7 TNSKAEAWELIGNQFWTIGRVAARPSDRENDIFLENIV-PGSTVAVIGASTRFLIEKALERGASVTVFDFSQRMCDDLAE   85 (261)
T ss_dssp             TCTTHHHHHTTTTHHHHTSCGGGSCCHHHHHHHTTTCC-TTCEEEEECTTCHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             hhhhhhHHHHHHHHHHHHhhccccHHHHHHHHHhcCCC-CcCEEEEEeCcchHHHHHHHhcCCEEEEEECCHHHHHHHHH
Confidence            44455666665555544322111 23445566666544 67799999999999998887   48999999982       


Q ss_pred             --CCcEEEccCCCCCC-----CCCCccEEEEcccccCC---CHHHHHHHHHHhcCcCcEEEEEee
Q 022592          172 --DPSVIACDMSNTPL-----NSSSVDVAVFCLSLMGI---NFPNYLQEAQRVLKPSGWLLIAEV  226 (294)
Q Consensus       172 --~~~~~~~d~~~lp~-----~~~~fD~Vi~~~~l~~~---~~~~~l~el~r~LkpgG~l~i~e~  226 (294)
                        ...++..++..++.     .+++||+|+++.+++|.   +...++.++.++| |||.++++..
T Consensus        86 ~~~~~~v~~~~~~~~~~~~~~~~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~  149 (261)
T 3iv6_A           86 ALADRCVTIDLLDITAEIPKELAGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVK  149 (261)
T ss_dssp             HTSSSCCEEEECCTTSCCCGGGTTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEE
T ss_pred             HHHhccceeeeeecccccccccCCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEec
Confidence              11134555554443     25689999999999985   4567999999999 9999999743

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.47  E-value=8.3e-14  Score=125.86  Aligned_cols=116  Identities=11%  Similarity=0.184  Sum_probs=86.0

Q ss_pred             CCCEEEEEcCcccHHHHHhc----cceEEEeccCC------------C---------CcEEEccC------CCC--CCCC
Q 022592          141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVSN------------D---------PSVIACDM------SNT--PLNS  187 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~~------------~---------~~~~~~d~------~~l--p~~~  187 (294)
                      ++.+|||||||+|..+..++    ..|+|+|+|+.            .         +.+.+.|+      .++  ++++
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~  127 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYF  127 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCCS
T ss_pred             CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccccC
Confidence            46799999999997554332    37999999981            1         34667777      222  3567


Q ss_pred             CCccEEEEcccccCC----CHHHHHHHHHHhcCcCcEEEEEeecCC----------------------------------
Q 022592          188 SSVDVAVFCLSLMGI----NFPNYLQEAQRVLKPSGWLLIAEVKSR----------------------------------  229 (294)
Q Consensus       188 ~~fD~Vi~~~~l~~~----~~~~~l~el~r~LkpgG~l~i~e~~~~----------------------------------  229 (294)
                      ++||+|+|..++|+.    +...++++++++|||||.|++......                                  
T Consensus       128 ~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  207 (302)
T 2vdw_A          128 GKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMDGDKLSKLTDKKTFIIHKNLPSSENYMSVEKIADDRI  207 (302)
T ss_dssp             SCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEECHHHHTTCCSCEEEECCSSSCTTTSEEEECEEETTEE
T ss_pred             CCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHhcCCcccccccccccceeeecccccccc
Confidence            899999999999862    567999999999999999998753210                                  


Q ss_pred             --CCCCC--C-----CCCHHHHHHHHHHCCCeEEEE
Q 022592          230 --FDPNT--G-----GADPNKFSKAVCDLGFAPVSK  256 (294)
Q Consensus       230 --~~~~~--~-----~~~~~~~~~~l~~~Gf~~~~~  256 (294)
                        +.+..  .     .++.+++..+++++||+++..
T Consensus       208 ~~~~~~~~~~~~~e~~v~~~el~~l~~~~Gl~lv~~  243 (302)
T 2vdw_A          208 VVYNPSTMSTPMTEYIIKKNDIVRVFNEYGFVLVDN  243 (302)
T ss_dssp             EEBCTTTBSSCEEEECCCHHHHHHHHHHTTEEEEEE
T ss_pred             ceeeccccCCCceeeeeEHHHHHHHHHHCCCEEEEe
Confidence              00111  0     256789999999999999885

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.47  E-value=5.2e-13  Score=113.68  Aligned_cols=114  Identities=8%  Similarity=0.045  Sum_probs=88.3

Q ss_pred             HHHHhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccC---------------C-CCcEEEccCCCCCCCCCCccE
Q 022592          132 IVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS---------------N-DPSVIACDMSNTPLNSSSVDV  192 (294)
Q Consensus       132 ~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~---------------~-~~~~~~~d~~~lp~~~~~fD~  192 (294)
                      ++..+... ++.+|||||||+|.++..++   ..|+|+|+++               . ++.++.+|+.........||+
T Consensus        47 ~l~~l~~~-~~~~vLDlGcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~D~  125 (204)
T 3njr_A           47 TLAALAPR-RGELLWDIGGGSGSVSVEWCLAGGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLPEA  125 (204)
T ss_dssp             HHHHHCCC-TTCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCCCSE
T ss_pred             HHHhcCCC-CCCEEEEecCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCCCCE
Confidence            44555443 67799999999999988776   4899999997               2 678999999874333457999


Q ss_pred             EEEcccccCCCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEEec
Q 022592          193 AVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSKDF  258 (294)
Q Consensus       193 Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  258 (294)
                      |++..++   +.. ++.++.++|+|||.+++......        +...+...+++.||++.....
T Consensus       126 v~~~~~~---~~~-~l~~~~~~LkpgG~lv~~~~~~~--------~~~~~~~~l~~~g~~i~~i~~  179 (204)
T 3njr_A          126 VFIGGGG---SQA-LYDRLWEWLAPGTRIVANAVTLE--------SETLLTQLHARHGGQLLRIDI  179 (204)
T ss_dssp             EEECSCC---CHH-HHHHHHHHSCTTCEEEEEECSHH--------HHHHHHHHHHHHCSEEEEEEE
T ss_pred             EEECCcc---cHH-HHHHHHHhcCCCcEEEEEecCcc--------cHHHHHHHHHhCCCcEEEEEe
Confidence            9987754   566 99999999999999999764321        346778889999998877433

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.47  E-value=2.6e-13  Score=117.94  Aligned_cols=116  Identities=15%  Similarity=0.098  Sum_probs=85.4

Q ss_pred             CCCCEEEEEcCcccHHHHHhc------cceEEEeccC-------------CCCcEEEccCCC---CCCCCCCccEEEEcc
Q 022592          140 SPSLVIADFGCGDARLAKSVK------NKVFSFDLVS-------------NDPSVIACDMSN---TPLNSSSVDVAVFCL  197 (294)
Q Consensus       140 ~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~-------------~~~~~~~~d~~~---lp~~~~~fD~Vi~~~  197 (294)
                      .|+.+|||+|||+|.++..++      ..|+|+|+++             .++..+.+|+..   .++..+++|+|++..
T Consensus        76 kpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDvVf~d~  155 (233)
T 4df3_A           76 KEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDGLYADV  155 (233)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEEEEECC
T ss_pred             CCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEEEEEec
Confidence            488999999999999999887      3799999997             467778887754   456678899987642


Q ss_pred             cccCCCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCC-CCCHHHHHHHHHHCCCeEEEE
Q 022592          198 SLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTG-GADPNKFSKAVCDLGFAPVSK  256 (294)
Q Consensus       198 ~l~~~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~-~~~~~~~~~~l~~~Gf~~~~~  256 (294)
                       .++.+...++.++.++|||||.++++........... ........+.|+++||++++.
T Consensus       156 -~~~~~~~~~l~~~~r~LKpGG~lvI~ik~r~~d~~~p~~~~~~~ev~~L~~~GF~l~e~  214 (233)
T 4df3_A          156 -AQPEQAAIVVRNARFFLRDGGYMLMAIKARSIDVTTEPSEVYKREIKTLMDGGLEIKDV  214 (233)
T ss_dssp             -CCTTHHHHHHHHHHHHEEEEEEEEEEEECCHHHHHTCCCHHHHHHHHHHHHTTCCEEEE
T ss_pred             -cCChhHHHHHHHHHHhccCCCEEEEEEecccCCCCCChHHHHHHHHHHHHHCCCEEEEE
Confidence             2334677899999999999999999753332211111 112244567789999998874

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=99.47  E-value=1.9e-13  Score=122.51  Aligned_cols=127  Identities=15%  Similarity=0.235  Sum_probs=89.6

Q ss_pred             HHHHHHhhccCCCCEEEEEcCcccHHHHHhc----cceEEEeccCCCCcE--------E---EccCCCCC---CCCCCcc
Q 022592          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVSNDPSV--------I---ACDMSNTP---LNSSSVD  191 (294)
Q Consensus       130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~~~~~~--------~---~~d~~~lp---~~~~~fD  191 (294)
                      ..+++.+....++.+|||||||||.++..++    ..|+|+|+|+..+.+        .   ..++..++   ++..+||
T Consensus        74 ~~~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~~~fD  153 (291)
T 3hp7_A           74 EKALAVFNLSVEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTEGLPS  153 (291)
T ss_dssp             HHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCTTCCCS
T ss_pred             HHHHHhcCCCccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcccceecccCceecchhhCCCCCCC
Confidence            4455555544466799999999999998775    389999999854432        1   22443333   3445699


Q ss_pred             EEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEeecCCCCCC-----CCC---------CCHHHHHHHHHHCCCeEEEEe
Q 022592          192 VAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPN-----TGG---------ADPNKFSKAVCDLGFAPVSKD  257 (294)
Q Consensus       192 ~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~-----~~~---------~~~~~~~~~l~~~Gf~~~~~~  257 (294)
                      +|++..+++  +...++.++.|+|+|||.++++. .+.|...     ..+         ...+++..++..+||.+....
T Consensus       154 ~v~~d~sf~--sl~~vL~e~~rvLkpGG~lv~lv-kPqfe~~~~~~~~~G~vrd~~~~~~~~~~v~~~~~~~Gf~v~~~~  230 (291)
T 3hp7_A          154 FASIDVSFI--SLNLILPALAKILVDGGQVVALV-KPQFEAGREQIGKNGIVRESSIHEKVLETVTAFAVDYGFSVKGLD  230 (291)
T ss_dssp             EEEECCSSS--CGGGTHHHHHHHSCTTCEEEEEE-CGGGTSCGGGCC-CCCCCCHHHHHHHHHHHHHHHHHTTEEEEEEE
T ss_pred             EEEEEeeHh--hHHHHHHHHHHHcCcCCEEEEEE-CcccccChhhcCCCCccCCHHHHHHHHHHHHHHHHHCCCEEEEEE
Confidence            999987765  56889999999999999999972 2222111     011         366788899999999998866


Q ss_pred             cc
Q 022592          258 FS  259 (294)
Q Consensus       258 ~~  259 (294)
                      .+
T Consensus       231 ~s  232 (291)
T 3hp7_A          231 FS  232 (291)
T ss_dssp             EC
T ss_pred             EC
Confidence            53

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.46  E-value=2.6e-13  Score=115.91  Aligned_cols=109  Identities=11%  Similarity=0.117  Sum_probs=86.5

Q ss_pred             CCCEEEEEcCcccHHHHHhc-----cceEEEeccC---------------CCCcEEEccCCCCC--CCCCCccEEEEccc
Q 022592          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSNTP--LNSSSVDVAVFCLS  198 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~---------------~~~~~~~~d~~~lp--~~~~~fD~Vi~~~~  198 (294)
                      ++.+|||||||+|.++..++     ..++|+|+|+               .++.++.+|+..++  +++++||+|++++.
T Consensus        41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~  120 (214)
T 1yzh_A           41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS  120 (214)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred             CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECC
Confidence            46799999999999988776     3799999996               36789999999877  77889999999876


Q ss_pred             ccCC---------CHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEEe
Q 022592          199 LMGI---------NFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSKD  257 (294)
Q Consensus       199 l~~~---------~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~  257 (294)
                      ..+.         ....++.++.++|+|||.+++..-...        ....+.+.+.++||.++...
T Consensus       121 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~--------~~~~~~~~~~~~g~~~~~~~  180 (214)
T 1yzh_A          121 DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRG--------LFEYSLVSFSQYGMKLNGVW  180 (214)
T ss_dssp             CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHH--------HHHHHHHHHHHHTCEEEEEE
T ss_pred             CCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCCHH--------HHHHHHHHHHHCCCeeeecc
Confidence            5442         236899999999999999998642111        12567788899999887754

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.45  E-value=1.4e-12  Score=106.38  Aligned_cols=115  Identities=17%  Similarity=0.268  Sum_probs=89.3

Q ss_pred             HHHHhhccCCCCEEEEEcCcccHHHHHhc------cceEEEeccC----CCCcEEEccCCCCC--------CCCCCccEE
Q 022592          132 IVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----NDPSVIACDMSNTP--------LNSSSVDVA  193 (294)
Q Consensus       132 ~~~~l~~~~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~----~~~~~~~~d~~~lp--------~~~~~fD~V  193 (294)
                      ++..+....++.+|||+|||+|.++..++      ..++|+|+++    .++.+..+|+...+        +++++||+|
T Consensus        13 ~~~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~D~i   92 (180)
T 1ej0_A           13 IQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPIVGVDFLQGDFRDELVMKALLERVGDSKVQVV   92 (180)
T ss_dssp             HHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCCCTTEEEEESCTTSHHHHHHHHHHHTTCCEEEE
T ss_pred             HHHHhCCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECccccccCcEEEEEcccccchhhhhhhccCCCCceeEE
Confidence            44444433467799999999999887764      3799999998    56778899998876        777899999


Q ss_pred             EEcccccCC-CH-----------HHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEE
Q 022592          194 VFCLSLMGI-NF-----------PNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVS  255 (294)
Q Consensus       194 i~~~~l~~~-~~-----------~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~  255 (294)
                      ++..++++. +.           ..++.++.++|+|||.+++..+...        ....+...+... |..+.
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~--------~~~~~~~~~~~~-~~~~~  157 (180)
T 1ej0_A           93 MSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGE--------GFDEYLREIRSL-FTKVK  157 (180)
T ss_dssp             EECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESST--------THHHHHHHHHHH-EEEEE
T ss_pred             EECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCC--------cHHHHHHHHHHh-hhhEE
Confidence            999888874 33           6899999999999999999775432        346677777774 76665

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.44  E-value=8.7e-14  Score=117.73  Aligned_cols=134  Identities=15%  Similarity=0.079  Sum_probs=90.3

Q ss_pred             HHHHHHhhccCCCCEEEEEcCcccHHHHHhc-----cceEEEeccCC--------------CCcEEEccCCCCCCCC---
Q 022592          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVSN--------------DPSVIACDMSNTPLNS---  187 (294)
Q Consensus       130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~~--------------~~~~~~~d~~~lp~~~---  187 (294)
                      ..+++.+....++.+|||+|||+|.++..++     ..++|+|+++.              ++.++++|+.. ++++   
T Consensus        19 ~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~~~~~~   97 (215)
T 4dzr_A           19 EEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIE-WLIERAE   97 (215)
T ss_dssp             HHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHHHH-HHHHHHH
T ss_pred             HHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHh-hhhhhhh
Confidence            3345555442466799999999999988776     27999999983              34556666655 5555   


Q ss_pred             --CCccEEEEcccccCC-C--------------------------HHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCC
Q 022592          188 --SSVDVAVFCLSLMGI-N--------------------------FPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGAD  238 (294)
Q Consensus       188 --~~fD~Vi~~~~l~~~-~--------------------------~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~  238 (294)
                        ++||+|+++..+++. +                          ...++.++.++|+|||.+++.++..        ..
T Consensus        98 ~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~--------~~  169 (215)
T 4dzr_A           98 RGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGH--------NQ  169 (215)
T ss_dssp             TTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTT--------SC
T ss_pred             ccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECC--------cc
Confidence              899999997665431 1                          1678899999999999966655431        24


Q ss_pred             HHHHHHHHH--HCCCeEEEE-eccCCeEEEEEEEECC
Q 022592          239 PNKFSKAVC--DLGFAPVSK-DFSNKMFIMFYFKKKE  272 (294)
Q Consensus       239 ~~~~~~~l~--~~Gf~~~~~-~~~~~~f~~i~~~k~~  272 (294)
                      .+.+..++.  +.||..+.. ........++.+++..
T Consensus       170 ~~~~~~~l~~~~~gf~~~~~~~~~~~~~r~~~~~~~~  206 (215)
T 4dzr_A          170 ADEVARLFAPWRERGFRVRKVKDLRGIDRVIAVTREP  206 (215)
T ss_dssp             HHHHHHHTGGGGGGTEECCEEECTTSCEEEEEEEECC
T ss_pred             HHHHHHHHHHhhcCCceEEEEEecCCCEEEEEEEEcC
Confidence            688899999  999977653 2333344555555543

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.44  E-value=7.5e-13  Score=116.38  Aligned_cols=87  Identities=18%  Similarity=0.265  Sum_probs=74.7

Q ss_pred             CCCEEEEEcCcccHHHHHhc---cceEEEeccCC---------CCcEEEccCCCCCCCCCCccEEEEcccccC--CCHHH
Q 022592          141 PSLVIADFGCGDARLAKSVK---NKVFSFDLVSN---------DPSVIACDMSNTPLNSSSVDVAVFCLSLMG--INFPN  206 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~~---------~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~--~~~~~  206 (294)
                      ++.+|||||||+|.++..++   ..|+|+|+|+.         ...++.+|+..+++++++||+|++..+++|  .++..
T Consensus        54 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~~~~  133 (260)
T 2avn_A           54 NPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVENKDK  133 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSCHHH
T ss_pred             CCCeEEEeCCCcCHHHHHHHHcCCeEEEEeCCHHHHHHHHhhcCCCEEECcHHHCCCCCCCEEEEEEcchhhhccccHHH
Confidence            56799999999999999887   37999999972         123889999999998899999999887765  47899


Q ss_pred             HHHHHHHhcCcCcEEEEEeec
Q 022592          207 YLQEAQRVLKPSGWLLIAEVK  227 (294)
Q Consensus       207 ~l~el~r~LkpgG~l~i~e~~  227 (294)
                      +++++.++|+|||.+++....
T Consensus       134 ~l~~~~~~LkpgG~l~~~~~~  154 (260)
T 2avn_A          134 AFSEIRRVLVPDGLLIATVDN  154 (260)
T ss_dssp             HHHHHHHHEEEEEEEEEEEEB
T ss_pred             HHHHHHHHcCCCeEEEEEeCC
Confidence            999999999999999997644

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.43  E-value=2.7e-13  Score=116.11  Aligned_cols=108  Identities=10%  Similarity=0.155  Sum_probs=84.0

Q ss_pred             CCCEEEEEcCcccHHHHHhc-----cceEEEeccC---------------CCCcEEEccCCCCC--CCCCCccEEEEccc
Q 022592          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSNTP--LNSSSVDVAVFCLS  198 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~---------------~~~~~~~~d~~~lp--~~~~~fD~Vi~~~~  198 (294)
                      ++.+|||||||+|.++..++     ..|+|+|+|+               .++.++.+|+..++  +++++||.|++.+.
T Consensus        38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~  117 (213)
T 2fca_A           38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS  117 (213)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred             CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECC
Confidence            45699999999999998886     3799999997               36789999998876  77889999988765


Q ss_pred             ccCC---------CHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEE
Q 022592          199 LMGI---------NFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSK  256 (294)
Q Consensus       199 l~~~---------~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~  256 (294)
                      ..|.         ....++.++.++|+|||.|++......        ..+.+...+.+.||.....
T Consensus       118 ~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~~~--------~~~~~~~~~~~~g~~~~~~  176 (213)
T 2fca_A          118 DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRG--------LFEYSLKSFSEYGLLLTYV  176 (213)
T ss_dssp             CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHH--------HHHHHHHHHHHHTCEEEEE
T ss_pred             CCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCCHH--------HHHHHHHHHHHCCCccccc
Confidence            4432         136899999999999999998642111        1245677788889987664

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.43  E-value=4.1e-13  Score=110.56  Aligned_cols=113  Identities=16%  Similarity=0.147  Sum_probs=85.6

Q ss_pred             HHHHHhhccCCCCEEEEEcCcccHHHHHhc-----cceEEEeccC---------------C-CCcEEEccCCC-CCCCCC
Q 022592          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------N-DPSVIACDMSN-TPLNSS  188 (294)
Q Consensus       131 ~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~---------------~-~~~~~~~d~~~-lp~~~~  188 (294)
                      .++..+... ++.+|||||||+|.++..++     ..|+|+|+++               . ++ ++.+|+.. ++..++
T Consensus        16 ~~~~~~~~~-~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~~   93 (178)
T 3hm2_A           16 LAISALAPK-PHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVPD   93 (178)
T ss_dssp             HHHHHHCCC-TTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCCS
T ss_pred             HHHHHhccc-CCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccCC
Confidence            345555433 66799999999999998775     3799999997               1 45 77777744 333337


Q ss_pred             CccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEE
Q 022592          189 SVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSK  256 (294)
Q Consensus       189 ~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~  256 (294)
                      +||+|++..++++   ..+++++.++|+|||.+++..+...        +...+..+++..|+++...
T Consensus        94 ~~D~i~~~~~~~~---~~~l~~~~~~L~~gG~l~~~~~~~~--------~~~~~~~~~~~~~~~~~~~  150 (178)
T 3hm2_A           94 NPDVIFIGGGLTA---PGVFAAAWKRLPVGGRLVANAVTVE--------SEQMLWALRKQFGGTISSF  150 (178)
T ss_dssp             CCSEEEECC-TTC---TTHHHHHHHTCCTTCEEEEEECSHH--------HHHHHHHHHHHHCCEEEEE
T ss_pred             CCCEEEECCcccH---HHHHHHHHHhcCCCCEEEEEeeccc--------cHHHHHHHHHHcCCeeEEE
Confidence            8999999999887   7899999999999999999764321        3467788899999887764

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.43  E-value=2.5e-12  Score=128.21  Aligned_cols=140  Identities=11%  Similarity=0.231  Sum_probs=104.1

Q ss_pred             HHHHHHhhccCCCCEEEEEcCcccHHHHHhc------cceEEEeccC---------------------CCCcEEEccCCC
Q 022592          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS---------------------NDPSVIACDMSN  182 (294)
Q Consensus       130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~---------------------~~~~~~~~d~~~  182 (294)
                      +.+++.+... ++.+|||||||+|.++..++      ..|+|+|+|+                     .++.++++|+..
T Consensus       711 e~LLelL~~~-~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~d  789 (950)
T 3htx_A          711 EYALKHIRES-SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILE  789 (950)
T ss_dssp             HHHHHHHHHS-CCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTS
T ss_pred             HHHHHHhccc-CCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHh
Confidence            4456666554 66799999999999999886      2689999997                     136799999999


Q ss_pred             CCCCCCCccEEEEcccccCCCH---HHHHHHHHHhcCcCcEEEEEeecCCC----C--------------------C--C
Q 022592          183 TPLNSSSVDVAVFCLSLMGINF---PNYLQEAQRVLKPSGWLLIAEVKSRF----D--------------------P--N  233 (294)
Q Consensus       183 lp~~~~~fD~Vi~~~~l~~~~~---~~~l~el~r~LkpgG~l~i~e~~~~~----~--------------------~--~  233 (294)
                      +++++++||+|++..+++|.+.   ..+++++.++|+|| .+++...+..+    .                    .  .
T Consensus       790 Lp~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN~eyN~lF~~Lnp~tr~~dPd~~~~~~fRh~DH  868 (950)
T 3htx_A          790 FDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPNYEFNTILQRSTPETQEENNSEPQLPKFRNHDH  868 (950)
T ss_dssp             CCTTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECBGGGHHHHTCC------------CCSSCSCSSC
T ss_pred             CCcccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecCchhhhhhhhcccccccccccccccccccccCc
Confidence            9999999999999999999753   35899999999999 77776533211    0                    0  1


Q ss_pred             CCCCCHHHHHH----HHHHCCCeEEEEeccCCe-------EEEEEEEEC
Q 022592          234 TGGADPNKFSK----AVCDLGFAPVSKDFSNKM-------FIMFYFKKK  271 (294)
Q Consensus       234 ~~~~~~~~~~~----~l~~~Gf~~~~~~~~~~~-------f~~i~~~k~  271 (294)
                      ...++.++|..    +.+..||.+.........       -.+.+|+|.
T Consensus       869 rFEWTReEFr~Wae~LAer~GYsVefvGVGDg~ep~vG~~TQiAVFtR~  917 (950)
T 3htx_A          869 KFEWTREQFNQWASKLGKRHNYSVEFSGVGGSGEVEPGFASQIAIFRRE  917 (950)
T ss_dssp             SCCBCHHHHHHHHHHHHHHTTEEEEEEEESSCSSSTTCCSEEEEEEEES
T ss_pred             ceeecHHHHHHHHHHHHHhcCcEEEEEccCCCCCCCCCCccEEEEEEEC
Confidence            11257777776    778889988775544432       256677774

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.43  E-value=1.2e-12  Score=113.82  Aligned_cols=130  Identities=13%  Similarity=0.072  Sum_probs=88.2

Q ss_pred             CCCCEEEEEcCcccHHHHHhc------cceEEEeccC-------------CCCcEEEccCCCCCC---CCCCccEEEEcc
Q 022592          140 SPSLVIADFGCGDARLAKSVK------NKVFSFDLVS-------------NDPSVIACDMSNTPL---NSSSVDVAVFCL  197 (294)
Q Consensus       140 ~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~-------------~~~~~~~~d~~~lp~---~~~~fD~Vi~~~  197 (294)
                      .++.+|||+|||+|.++..++      ..|+|+|+|+             .++.++.+|+.....   ..++||+|++..
T Consensus        75 ~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D~I~~d~  154 (232)
T 3id6_C           75 RKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVDI  154 (232)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEEEEEECC
T ss_pred             CCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccceEEEEecC
Confidence            477899999999999988776      2899999998             477888999876431   246899999875


Q ss_pred             cccCCCHHHHH-HHHHHhcCcCcEEEEEeecCCCCCCC-CCCCHHHHHHHHHHCCCeEEEEecc---CCeEEEEEEEEC
Q 022592          198 SLMGINFPNYL-QEAQRVLKPSGWLLIAEVKSRFDPNT-GGADPNKFSKAVCDLGFAPVSKDFS---NKMFIMFYFKKK  271 (294)
Q Consensus       198 ~l~~~~~~~~l-~el~r~LkpgG~l~i~e~~~~~~~~~-~~~~~~~~~~~l~~~Gf~~~~~~~~---~~~f~~i~~~k~  271 (294)
                      +.  .+....+ ..+.++|||||.|+++.-....+... ..-......+.|+++||++.+....   ...++++++++.
T Consensus       155 a~--~~~~~il~~~~~~~LkpGG~lvisik~~~~d~t~~~~e~~~~~~~~L~~~gf~~~~~~~l~p~~~~h~~v~~~~~  231 (232)
T 3id6_C          155 AQ--PDQTDIAIYNAKFFLKVNGDMLLVIKARSIDVTKDPKEIYKTEVEKLENSNFETIQIINLDPYDKDHAIVLSKYK  231 (232)
T ss_dssp             CC--TTHHHHHHHHHHHHEEEEEEEEEEEC-------CCSSSSTTHHHHHHHHTTEEEEEEEECTTTCSSCEEEEEEEC
T ss_pred             CC--hhHHHHHHHHHHHhCCCCeEEEEEEccCCcccCCCHHHHHHHHHHHHHHCCCEEEEEeccCCCcCceEEEEEEeC
Confidence            53  4555544 45566999999999974222211110 1112255677888999999885443   334666666653

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.42  E-value=1.5e-12  Score=110.09  Aligned_cols=128  Identities=9%  Similarity=0.039  Sum_probs=91.5

Q ss_pred             HHHHHHHhhccC--CCCEEEEEcCcccHHHHHhc-----cceEEEeccC---------------CCCcEEEccCCCCCCC
Q 022592          129 VNIIVKWLKDHS--PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSNTPLN  186 (294)
Q Consensus       129 ~~~~~~~l~~~~--~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~---------------~~~~~~~~d~~~lp~~  186 (294)
                      +..+++.+....  ++.+|||+|||+|.++..++     ..++|+|+|+               .++.++.+|+...+ +
T Consensus        51 ~~~~~~~l~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~  129 (207)
T 1jsx_A           51 VRHILDSIVVAPYLQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP-S  129 (207)
T ss_dssp             HHHHHHHHHHGGGCCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC-C
T ss_pred             HHHHHhhhhhhhhcCCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCC-c
Confidence            445566554331  46799999999999888776     3799999987               24788999998876 4


Q ss_pred             CCCccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEEe-----ccCC
Q 022592          187 SSSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSKD-----FSNK  261 (294)
Q Consensus       187 ~~~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~-----~~~~  261 (294)
                      .++||+|++...   .++..++.++.++|+|||.+++..-         ....+++..++.  ||.++...     ....
T Consensus       130 ~~~~D~i~~~~~---~~~~~~l~~~~~~L~~gG~l~~~~~---------~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~  195 (207)
T 1jsx_A          130 EPPFDGVISRAF---ASLNDMVSWCHHLPGEQGRFYALKG---------QMPEDEIALLPE--EYQVESVVKLQVPALDG  195 (207)
T ss_dssp             CSCEEEEECSCS---SSHHHHHHHHTTSEEEEEEEEEEES---------SCCHHHHHTSCT--TEEEEEEEEEECC--CC
T ss_pred             cCCcCEEEEecc---CCHHHHHHHHHHhcCCCcEEEEEeC---------CCchHHHHHHhc--CCceeeeeeeccCCCCC
Confidence            578999997532   4678999999999999999999631         124466666655  99887622     1234


Q ss_pred             eEEEEEEEEC
Q 022592          262 MFIMFYFKKK  271 (294)
Q Consensus       262 ~f~~i~~~k~  271 (294)
                      ...+++++|.
T Consensus       196 ~~~~~~~~k~  205 (207)
T 1jsx_A          196 ERHLVVIKAN  205 (207)
T ss_dssp             EEEEEEEEEC
T ss_pred             ceEEEEEEec
Confidence            4555555554

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=99.41  E-value=7.2e-13  Score=109.51  Aligned_cols=103  Identities=19%  Similarity=0.182  Sum_probs=80.7

Q ss_pred             CCCCEEEEEcCcccHHHHHhccceEEEeccC-----------CCCcEEEccCCCCCC---CCCCccEEEEcccccCC--C
Q 022592          140 SPSLVIADFGCGDARLAKSVKNKVFSFDLVS-----------NDPSVIACDMSNTPL---NSSSVDVAVFCLSLMGI--N  203 (294)
Q Consensus       140 ~~~~~VLDiGcG~G~~~~~l~~~v~gvD~s~-----------~~~~~~~~d~~~lp~---~~~~fD~Vi~~~~l~~~--~  203 (294)
                      .++.+|||||||...           +|+|+           .++.+..+|+.++++   ++++||+|+++.+++|.  +
T Consensus        11 ~~g~~vL~~~~g~v~-----------vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l~~~~~~   79 (176)
T 2ld4_A           11 SAGQFVAVVWDKSSP-----------VEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGLVPGSTTLH   79 (176)
T ss_dssp             CTTSEEEEEECTTSC-----------HHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECCSTTCCCCC
T ss_pred             CCCCEEEEecCCcee-----------eeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECChhhhcccC
Confidence            367899999999732           44443           358899999999887   78999999999999985  8


Q ss_pred             HHHHHHHHHHhcCcCcEEEEEeecCCCC-CCCCCCCHHHHHHHHHHCCCeEE
Q 022592          204 FPNYLQEAQRVLKPSGWLLIAEVKSRFD-PNTGGADPNKFSKAVCDLGFAPV  254 (294)
Q Consensus       204 ~~~~l~el~r~LkpgG~l~i~e~~~~~~-~~~~~~~~~~~~~~l~~~Gf~~~  254 (294)
                      +..++++++|+|||||.|++.+...... ......+.+++..+|+++|| +.
T Consensus        80 ~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf-i~  130 (176)
T 2ld4_A           80 SAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGL-VE  130 (176)
T ss_dssp             CHHHHHHHHHHEEEEEEEEEEEEEESSSCSSSSSCCHHHHHHHHHHTTC-EE
T ss_pred             HHHHHHHHHHHCCCCEEEEEEcccccccccccccCCHHHHHHHHHHCCC-cE
Confidence            8999999999999999999965322111 11122478999999999999 54

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.41  E-value=5.9e-13  Score=115.14  Aligned_cols=125  Identities=13%  Similarity=0.111  Sum_probs=87.0

Q ss_pred             CCCEEEEEcCcccHHHHHhc------cceEEEeccC-------------CCCcEEEccCCC---CCCCCCCccEEEEccc
Q 022592          141 PSLVIADFGCGDARLAKSVK------NKVFSFDLVS-------------NDPSVIACDMSN---TPLNSSSVDVAVFCLS  198 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~-------------~~~~~~~~d~~~---lp~~~~~fD~Vi~~~~  198 (294)
                      ++.+|||+|||+|.++..++      ..|+|+|+|+             .++.++.+|+..   +++.+++||+|++...
T Consensus        77 ~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~~~~  156 (233)
T 2ipx_A           77 PGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFADVA  156 (233)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEECCC
T ss_pred             CCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEEcCC
Confidence            56799999999999888775      3799999994             467899999987   4556788999998654


Q ss_pred             ccCCCH-HHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHH----HHHHHHCCCeEEEEec---cCCeEEEEEEEE
Q 022592          199 LMGINF-PNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKF----SKAVCDLGFAPVSKDF---SNKMFIMFYFKK  270 (294)
Q Consensus       199 l~~~~~-~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~----~~~l~~~Gf~~~~~~~---~~~~f~~i~~~k  270 (294)
                        ..+. ..++.++.++|+|||.+++........ .  ......+    .++|+++||+++....   ....++++++++
T Consensus       157 --~~~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~-~--~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~v~~~~  231 (233)
T 2ipx_A          157 --QPDQTRIVALNAHTFLRNGGHFVISIKANCID-S--TASAEAVFASEVKKMQQENMKPQEQLTLEPYERDHAVVVGVY  231 (233)
T ss_dssp             --CTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHC-S--SSCHHHHHHHHHHTTGGGTEEEEEEEECTTTSSSEEEEEEEE
T ss_pred             --CccHHHHHHHHHHHHcCCCeEEEEEEcccccc-c--CCCHHHHHHHHHHHHHHCCCceEEEEecCCccCCcEEEEEEe
Confidence              3333 456888999999999999953321100 0  0111111    5788999999988332   222355666554

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.41  E-value=1.4e-12  Score=116.17  Aligned_cols=124  Identities=14%  Similarity=0.179  Sum_probs=92.3

Q ss_pred             HHHHHHhhccCCCCEEEEEcCcc---cHHHHHhc-----cceEEEeccC-------------CCCcEEEccCCCCC----
Q 022592          130 NIIVKWLKDHSPSLVIADFGCGD---ARLAKSVK-----NKVFSFDLVS-------------NDPSVIACDMSNTP----  184 (294)
Q Consensus       130 ~~~~~~l~~~~~~~~VLDiGcG~---G~~~~~l~-----~~v~gvD~s~-------------~~~~~~~~d~~~lp----  184 (294)
                      ..++..+.......+|||||||+   |.++..+.     .+|+++|+|+             .++.++.+|+.+.+    
T Consensus        66 ~~~~~~l~~~~~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~  145 (274)
T 2qe6_A           66 VRGVRFLAGEAGISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILN  145 (274)
T ss_dssp             HHHHHHHHTTTCCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHH
T ss_pred             HHHHHHHhhccCCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhc
Confidence            34555554222346999999999   98766553     4899999987             36789999997631    


Q ss_pred             -------CCCCCccEEEEcccccCC-C--HHHHHHHHHHhcCcCcEEEEEeecCCC--------------CCCCCCCCHH
Q 022592          185 -------LNSSSVDVAVFCLSLMGI-N--FPNYLQEAQRVLKPSGWLLIAEVKSRF--------------DPNTGGADPN  240 (294)
Q Consensus       185 -------~~~~~fD~Vi~~~~l~~~-~--~~~~l~el~r~LkpgG~l~i~e~~~~~--------------~~~~~~~~~~  240 (294)
                             ++..+||+|++..+|||. +  +..+++++.++|+|||.|++.++....              ......++.+
T Consensus       146 ~~~~~~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  225 (274)
T 2qe6_A          146 HPDVRRMIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVDTGLPAQQKLARITRENLGEGWARTPE  225 (274)
T ss_dssp             SHHHHHHCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBCSSCHHHHHHHHHHHHHHSCCCCBCHH
T ss_pred             cchhhccCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecCcchHHHHHHHHHHHhcCCCCccCCHH
Confidence                   333589999999999995 3  789999999999999999999876531              0112235888


Q ss_pred             HHHHHHHHCCCeEEE
Q 022592          241 KFSKAVCDLGFAPVS  255 (294)
Q Consensus       241 ~~~~~l~~~Gf~~~~  255 (294)
                      ++..+|  .||++++
T Consensus       226 ei~~~l--~G~~l~~  238 (274)
T 2qe6_A          226 EIERQF--GDFELVE  238 (274)
T ss_dssp             HHHHTT--TTCEECT
T ss_pred             HHHHHh--CCCeEcc
Confidence            898888  5887765

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.41  E-value=9e-13  Score=109.30  Aligned_cols=113  Identities=20%  Similarity=0.335  Sum_probs=86.8

Q ss_pred             HHHHHhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccC----------------CCCcEEEccCCCCCCCC-CCc
Q 022592          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS----------------NDPSVIACDMSNTPLNS-SSV  190 (294)
Q Consensus       131 ~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~----------------~~~~~~~~d~~~lp~~~-~~f  190 (294)
                      .++..+.. .++.+|||+|||+|.++..++   ..|+|+|+++                .++.+..+|+.. +++. ++|
T Consensus        24 ~~~~~~~~-~~~~~vldiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~  101 (192)
T 1l3i_A           24 LIMCLAEP-GKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPE-ALCKIPDI  101 (192)
T ss_dssp             HHHHHHCC-CTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHH-HHTTSCCE
T ss_pred             HHHHhcCC-CCCCEEEEECCCCCHHHHHHHHhcCEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHH-hcccCCCC
Confidence            34444443 367799999999999988887   4799999987                256788888766 3333 589


Q ss_pred             cEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEE
Q 022592          191 DVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVS  255 (294)
Q Consensus       191 D~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~  255 (294)
                      |+|++..+++  +...++.++.++|+|||.+++......        +...+..++++.||.+..
T Consensus       102 D~v~~~~~~~--~~~~~l~~~~~~l~~gG~l~~~~~~~~--------~~~~~~~~l~~~g~~~~~  156 (192)
T 1l3i_A          102 DIAVVGGSGG--ELQEILRIIKDKLKPGGRIIVTAILLE--------TKFEAMECLRDLGFDVNI  156 (192)
T ss_dssp             EEEEESCCTT--CHHHHHHHHHHTEEEEEEEEEEECBHH--------HHHHHHHHHHHTTCCCEE
T ss_pred             CEEEECCchH--HHHHHHHHHHHhcCCCcEEEEEecCcc--------hHHHHHHHHHHCCCceEE
Confidence            9999987765  468999999999999999999764321        346788899999996544

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.41  E-value=1.1e-12  Score=115.32  Aligned_cols=119  Identities=18%  Similarity=0.308  Sum_probs=92.2

Q ss_pred             CCCCEEEEEcCcccHHHHHhc---cceEEEeccCC------------C--CcEEEccCCCCCCCCCCccEEEEcccccCC
Q 022592          140 SPSLVIADFGCGDARLAKSVK---NKVFSFDLVSN------------D--PSVIACDMSNTPLNSSSVDVAVFCLSLMGI  202 (294)
Q Consensus       140 ~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~~------------~--~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~  202 (294)
                      .++.+|||+|||+|.++..++   ..|+|+|+++.            .  +.+..+|+... +++++||+|+++...+  
T Consensus       119 ~~~~~VLDiGcG~G~l~~~la~~g~~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~-~~~~~fD~Vv~n~~~~--  195 (254)
T 2nxc_A          119 RPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAA-LPFGPFDLLVANLYAE--  195 (254)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHH-GGGCCEEEEEEECCHH--
T ss_pred             CCCCEEEEecCCCcHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhc-CcCCCCCEEEECCcHH--
Confidence            356799999999999988776   38999999982            1  67778777652 4467899999875443  


Q ss_pred             CHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEEeccCCeEEEEEEEE
Q 022592          203 NFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSKDFSNKMFIMFYFKK  270 (294)
Q Consensus       203 ~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~f~~i~~~k  270 (294)
                      ....++.++.++|+|||.++++.+...        ..+.+..+++++||.++...... .+..+.++|
T Consensus       196 ~~~~~l~~~~~~LkpgG~lils~~~~~--------~~~~v~~~l~~~Gf~~~~~~~~~-~W~~l~~~k  254 (254)
T 2nxc_A          196 LHAALAPRYREALVPGGRALLTGILKD--------RAPLVREAMAGAGFRPLEEAAEG-EWVLLAYGR  254 (254)
T ss_dssp             HHHHHHHHHHHHEEEEEEEEEEEEEGG--------GHHHHHHHHHHTTCEEEEEEEET-TEEEEEEEC
T ss_pred             HHHHHHHHHHHHcCCCCEEEEEeeccC--------CHHHHHHHHHHCCCEEEEEeccC-CeEEEEEEC
Confidence            246889999999999999999875432        45889999999999998866544 455666654

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=99.40  E-value=1.2e-13  Score=120.29  Aligned_cols=127  Identities=15%  Similarity=0.218  Sum_probs=81.6

Q ss_pred             HHHHHHHhhccCCCCEEEEEcCcccHHHHHhc----cceEEEeccCCCCcE--------EE---ccCCCCC---CCCCCc
Q 022592          129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVSNDPSV--------IA---CDMSNTP---LNSSSV  190 (294)
Q Consensus       129 ~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~~~~~~--------~~---~d~~~lp---~~~~~f  190 (294)
                      +..++..+.....+.+|||||||+|.++..++    ..|+|+|+|+..+..        ..   .++..+.   ++...+
T Consensus        25 L~~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (232)
T 3opn_A           25 LEKALKEFHLEINGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQGRP  104 (232)
T ss_dssp             HHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCSCCC
T ss_pred             HHHHHHHcCCCCCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCcCCC
Confidence            34556666554456799999999999998776    389999999854332        11   1111111   111124


Q ss_pred             cEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEeecCCCCC--------------CCCCCCHHHHHHHHHHCCCeEEEE
Q 022592          191 DVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDP--------------NTGGADPNKFSKAVCDLGFAPVSK  256 (294)
Q Consensus       191 D~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~--------------~~~~~~~~~~~~~l~~~Gf~~~~~  256 (294)
                      |.+.+..++.  +...++.++.++|+|||.+++.. .+.+..              .....+.+++..+++++||.+...
T Consensus       105 d~~~~D~v~~--~l~~~l~~i~rvLkpgG~lv~~~-~p~~e~~~~~~~~~G~~~d~~~~~~~~~~l~~~l~~aGf~v~~~  181 (232)
T 3opn_A          105 SFTSIDVSFI--SLDLILPPLYEILEKNGEVAALI-KPQFEAGREQVGKNGIIRDPKVHQMTIEKVLKTATQLGFSVKGL  181 (232)
T ss_dssp             SEEEECCSSS--CGGGTHHHHHHHSCTTCEEEEEE-CHHHHSCHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHTEEEEEE
T ss_pred             CEEEEEEEhh--hHHHHHHHHHHhccCCCEEEEEE-CcccccCHHHhCcCCeecCcchhHHHHHHHHHHHHHCCCEEEEE
Confidence            5554444433  23789999999999999999962 111110              000136678999999999999886


Q ss_pred             ec
Q 022592          257 DF  258 (294)
Q Consensus       257 ~~  258 (294)
                      ..
T Consensus       182 ~~  183 (232)
T 3opn_A          182 TF  183 (232)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=99.40  E-value=3.5e-12  Score=107.54  Aligned_cols=107  Identities=18%  Similarity=0.223  Sum_probs=81.0

Q ss_pred             CCCCEEEEEcCcccHHHHHhc---cceEEEeccC----CCCcEEEccCCCCCCC-------C----CCccEEEEcccccC
Q 022592          140 SPSLVIADFGCGDARLAKSVK---NKVFSFDLVS----NDPSVIACDMSNTPLN-------S----SSVDVAVFCLSLMG  201 (294)
Q Consensus       140 ~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~----~~~~~~~~d~~~lp~~-------~----~~fD~Vi~~~~l~~  201 (294)
                      .++.+|||+|||+|.++..++   ..|+|+|+++    .++.++.+|+.+.+..       .    ++||+|++......
T Consensus        24 ~~g~~VLDlG~G~G~~s~~la~~~~~V~gvD~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~D~Vlsd~~~~~  103 (191)
T 3dou_A           24 RKGDAVIEIGSSPGGWTQVLNSLARKIISIDLQEMEEIAGVRFIRCDIFKETIFDDIDRALREEGIEKVDDVVSDAMAKV  103 (191)
T ss_dssp             CTTCEEEEESCTTCHHHHHHTTTCSEEEEEESSCCCCCTTCEEEECCTTSSSHHHHHHHHHHHHTCSSEEEEEECCCCCC
T ss_pred             CCCCEEEEEeecCCHHHHHHHHcCCcEEEEeccccccCCCeEEEEccccCHHHHHHHHHHhhcccCCcceEEecCCCcCC
Confidence            467899999999999999987   4799999998    4789999999886521       1    48999999765432


Q ss_pred             C-----C-------HHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEE
Q 022592          202 I-----N-------FPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVS  255 (294)
Q Consensus       202 ~-----~-------~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~  255 (294)
                      .     +       ...++..+.++|+|||.|++..+...        ....+...++. .|..+.
T Consensus       104 ~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~--------~~~~~~~~l~~-~F~~v~  160 (191)
T 3dou_A          104 SGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGD--------MTNDFIAIWRK-NFSSYK  160 (191)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECST--------HHHHHHHHHGG-GEEEEE
T ss_pred             CCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCC--------CHHHHHHHHHH-hcCEEE
Confidence            1     1       24678889999999999998765432        23567777754 587766

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.39  E-value=2.4e-12  Score=114.33  Aligned_cols=105  Identities=16%  Similarity=0.267  Sum_probs=82.5

Q ss_pred             CCCEEEEEcCcccHHHHHhc-----cceEEEeccC---------------CCCcEEEccCCCCCCCCCCccEEEEcccc-
Q 022592          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVDVAVFCLSL-  199 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~---------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l-  199 (294)
                      ++.+|||+|||+|.++..++     ..|+|+|+|+               .++.++.+|+... +++++||+|+++..+ 
T Consensus       109 ~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~-~~~~~fD~Iv~npPy~  187 (276)
T 2b3t_A          109 QPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSA-LAGQQFAMIVSNPPYI  187 (276)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGG-GTTCCEEEEEECCCCB
T ss_pred             CCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhh-cccCCccEEEECCCCC
Confidence            56799999999999988776     3799999997               2578889998763 446789999998433 


Q ss_pred             ------------cCC-------------CHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEE
Q 022592          200 ------------MGI-------------NFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPV  254 (294)
Q Consensus       200 ------------~~~-------------~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~  254 (294)
                                  +|.             ....++.++.++|+|||++++..         +....+.+.++++++||..+
T Consensus       188 ~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~---------~~~~~~~~~~~l~~~Gf~~v  258 (276)
T 2b3t_A          188 DEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEH---------GWQQGEAVRQAFILAGYHDV  258 (276)
T ss_dssp             CTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEEC---------CSSCHHHHHHHHHHTTCTTC
T ss_pred             CccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE---------CchHHHHHHHHHHHCCCcEE
Confidence                        221             23678899999999999999852         12356889999999999765


Q ss_pred             E
Q 022592          255 S  255 (294)
Q Consensus       255 ~  255 (294)
                      .
T Consensus       259 ~  259 (276)
T 2b3t_A          259 E  259 (276)
T ss_dssp             C
T ss_pred             E
Confidence            5

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.39  E-value=1.1e-12  Score=113.44  Aligned_cols=118  Identities=12%  Similarity=0.125  Sum_probs=78.9

Q ss_pred             CCCEEEEEcCcccHHHHHhc-----cceEEEeccC-------------------CCCcEEEccCCCCCCC-CCCccEEEE
Q 022592          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS-------------------NDPSVIACDMSNTPLN-SSSVDVAVF  195 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~-------------------~~~~~~~~d~~~lp~~-~~~fD~Vi~  195 (294)
                      ++.+|||||||+|.++..++     ..|+|+|+|+                   .++.++.+|+..+|.. .+.+|.|++
T Consensus        24 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i~~  103 (225)
T 3p2e_A           24 FDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSISI  103 (225)
T ss_dssp             CSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEEEEEE
T ss_pred             CCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEEEEEE
Confidence            56799999999999998886     2799999993                   2467888999888632 134444444


Q ss_pred             ccccc----C--CCHHHHHHHHHHhcCcCcEEEEEe-ecCCCCC------CCCCCCHH-----HHHHHHHHCCCeEEEEe
Q 022592          196 CLSLM----G--INFPNYLQEAQRVLKPSGWLLIAE-VKSRFDP------NTGGADPN-----KFSKAVCDLGFAPVSKD  257 (294)
Q Consensus       196 ~~~l~----~--~~~~~~l~el~r~LkpgG~l~i~e-~~~~~~~------~~~~~~~~-----~~~~~l~~~Gf~~~~~~  257 (294)
                      .+...    +  .+...++.++.|+|||||.++++. +...+..      ..+.++..     ++..+++++||+++...
T Consensus       104 ~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~l~~aGf~v~~~~  183 (225)
T 3p2e_A          104 LFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVTTYSDSYEEAEIKKRGLPLLSKAYFLSEQYKAELSNSGFRIDDVK  183 (225)
T ss_dssp             ESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEECCCC--------------CCHHHHHSHHHHHHHHHHTCEEEEEE
T ss_pred             eCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEEeccccchhchhhhcCCCCCChhhcchHHHHHHHHHcCCCeeeee
Confidence            33221    1  245678999999999999999932 2221110      11112333     38889999999998755


Q ss_pred             c
Q 022592          258 F  258 (294)
Q Consensus       258 ~  258 (294)
                      .
T Consensus       184 ~  184 (225)
T 3p2e_A          184 E  184 (225)
T ss_dssp             E
T ss_pred             e
Confidence            4

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.38  E-value=4e-12  Score=109.31  Aligned_cols=125  Identities=20%  Similarity=0.201  Sum_probs=86.4

Q ss_pred             CCCEEEEEcCcccHHHHHhc------cceEEEeccC-------------CCCcEEEccCCCCC---CCCCCccEEEEccc
Q 022592          141 PSLVIADFGCGDARLAKSVK------NKVFSFDLVS-------------NDPSVIACDMSNTP---LNSSSVDVAVFCLS  198 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~-------------~~~~~~~~d~~~lp---~~~~~fD~Vi~~~~  198 (294)
                      ++.+|||+|||+|.++..++      ..|+|+|+|+             .++.++.+|+....   ...++||+|++...
T Consensus        73 ~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~~~  152 (227)
T 1g8a_A           73 PGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFEDVA  152 (227)
T ss_dssp             TTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEECCC
T ss_pred             CCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEECCC
Confidence            56799999999999888775      3799999998             36789999998732   12358999997654


Q ss_pred             ccCCCHH-HHHHHHHHhcCcCcEEEEEeecCCCCCCCC---CCCHHHHHHHHHHCCCeEEEEeccCCe---EEEEEEEE
Q 022592          199 LMGINFP-NYLQEAQRVLKPSGWLLIAEVKSRFDPNTG---GADPNKFSKAVCDLGFAPVSKDFSNKM---FIMFYFKK  270 (294)
Q Consensus       199 l~~~~~~-~~l~el~r~LkpgG~l~i~e~~~~~~~~~~---~~~~~~~~~~l~~~Gf~~~~~~~~~~~---f~~i~~~k  270 (294)
                        ..+.. .++.++.++|+|||.+++. +.........   .+...++..+ .++ |+++.......+   .+++++++
T Consensus       153 --~~~~~~~~l~~~~~~LkpgG~l~~~-~~~~~~~~~~~~~~~~~~~l~~l-~~~-f~~~~~~~~~~~~~~~~~~~~~~  226 (227)
T 1g8a_A          153 --QPTQAKILIDNAEVYLKRGGYGMIA-VKSRSIDVTKEPEQVFREVEREL-SEY-FEVIERLNLEPYEKDHALFVVRK  226 (227)
T ss_dssp             --STTHHHHHHHHHHHHEEEEEEEEEE-EEGGGTCTTSCHHHHHHHHHHHH-HTT-SEEEEEEECTTTSSSEEEEEEEC
T ss_pred             --CHhHHHHHHHHHHHhcCCCCEEEEE-EecCCCCCCCChhhhhHHHHHHH-Hhh-ceeeeEeccCcccCCCEEEEEEe
Confidence              33433 4599999999999999998 4332211111   1233455555 777 999875443322   66776664

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.38  E-value=1.9e-12  Score=106.66  Aligned_cols=112  Identities=13%  Similarity=0.220  Sum_probs=89.2

Q ss_pred             HHHHHHhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccC---------------CCCcEEEccCCCCCCCCCCcc
Q 022592          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVD  191 (294)
Q Consensus       130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~---------------~~~~~~~~d~~~lp~~~~~fD  191 (294)
                      ..++..+... ++.+|||+|||+|.++..++   ..++|+|+++               .++.++.+|+.+ ++++++||
T Consensus        25 ~~~~~~~~~~-~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D  102 (183)
T 2yxd_A           25 AVSIGKLNLN-KDDVVVDVGCGSGGMTVEIAKRCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED-VLDKLEFN  102 (183)
T ss_dssp             HHHHHHHCCC-TTCEEEEESCCCSHHHHHHHTTSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHH-HGGGCCCS
T ss_pred             HHHHHHcCCC-CCCEEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccc-cccCCCCc
Confidence            3455555433 66799999999999998886   4899999997               357888999877 66778899


Q ss_pred             EEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEE
Q 022592          192 VAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSK  256 (294)
Q Consensus       192 ~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~  256 (294)
                      +|++..+   .+...++.++.++  |||.+++......        +...+.+.++++||.+...
T Consensus       103 ~i~~~~~---~~~~~~l~~~~~~--~gG~l~~~~~~~~--------~~~~~~~~l~~~g~~~~~~  154 (183)
T 2yxd_A          103 KAFIGGT---KNIEKIIEILDKK--KINHIVANTIVLE--------NAAKIINEFESRGYNVDAV  154 (183)
T ss_dssp             EEEECSC---SCHHHHHHHHHHT--TCCEEEEEESCHH--------HHHHHHHHHHHTTCEEEEE
T ss_pred             EEEECCc---ccHHHHHHHHhhC--CCCEEEEEecccc--------cHHHHHHHHHHcCCeEEEE
Confidence            9999888   6778999999998  9999999864321        3467889999999977664

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.38  E-value=5.4e-13  Score=112.07  Aligned_cols=117  Identities=18%  Similarity=0.220  Sum_probs=84.4

Q ss_pred             CCCEEEEEcCcccHHHHHhc------cceEEEeccC----------------CCCcEEEccCCCCC-CCCCCccEEEEcc
Q 022592          141 PSLVIADFGCGDARLAKSVK------NKVFSFDLVS----------------NDPSVIACDMSNTP-LNSSSVDVAVFCL  197 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~----------------~~~~~~~~d~~~lp-~~~~~fD~Vi~~~  197 (294)
                      ++.+|||+|||+|.++..++      ..|+|+|+++                .++.++.+|+..++ +.+++||+|++..
T Consensus        22 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~  101 (197)
T 3eey_A           22 EGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMFNL  101 (197)
T ss_dssp             TTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEEEE
T ss_pred             CCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEEcC
Confidence            66799999999999888775      2799999997                25788999988775 5568899999987


Q ss_pred             cccC-------C---CHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHH---HHCCCeEEEEeccC
Q 022592          198 SLMG-------I---NFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAV---CDLGFAPVSKDFSN  260 (294)
Q Consensus       198 ~l~~-------~---~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l---~~~Gf~~~~~~~~~  260 (294)
                      .+..       .   +...++.++.++|+|||.+++..+......   ......+..++   ...+|.+....+.+
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~v~~~~~~~  174 (197)
T 3eey_A          102 GYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYGGDTG---FEEKEKVLEFLKGVDQKKFIVQRTDFIN  174 (197)
T ss_dssp             SBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCBTTTB---SHHHHHHHHHHTTSCTTTEEEEEEEETT
T ss_pred             CcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccCCCCc---HHHHHHHHHHHHhCCCCcEEEEEEEecc
Confidence            6621       1   345799999999999999999875432111   11123334444   45678888765543

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.38  E-value=9.2e-13  Score=115.72  Aligned_cols=123  Identities=13%  Similarity=0.030  Sum_probs=92.1

Q ss_pred             CCCEEEEEcCcccHHHHHhc-----cceEEEeccC---------------CCCcEEEccCCCCCCC---CCCccEEEEcc
Q 022592          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSNTPLN---SSSVDVAVFCL  197 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~---------------~~~~~~~~d~~~lp~~---~~~fD~Vi~~~  197 (294)
                      ++.+|||||||+|..+..++     ..|+++|+|+               .++.++.+|+++++..   .++||+|++..
T Consensus        80 ~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~a  159 (249)
T 3g89_A           80 GPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVARA  159 (249)
T ss_dssp             SSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEES
T ss_pred             CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEECC
Confidence            46799999999999887765     3799999997               3688999999887643   47899999865


Q ss_pred             cccCCCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEEec-----cCCeEEEEEEEECC
Q 022592          198 SLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSKDF-----SNKMFIMFYFKKKE  272 (294)
Q Consensus       198 ~l~~~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~-----~~~~f~~i~~~k~~  272 (294)
                      +   .+...++..+.++|+|||.+++..-. ...     -...++...+...||.+.....     ......+++++|..
T Consensus       160 ~---~~~~~ll~~~~~~LkpgG~l~~~~g~-~~~-----~e~~~~~~~l~~~G~~~~~~~~~~~p~~~~~R~l~~~~k~~  230 (249)
T 3g89_A          160 V---APLCVLSELLLPFLEVGGAAVAMKGP-RVE-----EELAPLPPALERLGGRLGEVLALQLPLSGEARHLVVLEKTA  230 (249)
T ss_dssp             S---CCHHHHHHHHGGGEEEEEEEEEEECS-CCH-----HHHTTHHHHHHHHTEEEEEEEEEECTTTCCEEEEEEEEECS
T ss_pred             c---CCHHHHHHHHHHHcCCCeEEEEEeCC-CcH-----HHHHHHHHHHHHcCCeEEEEEEeeCCCCCCcEEEEEEEeCC
Confidence            4   46789999999999999999986411 110     1223466778889998877331     23566777788765

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.37  E-value=1.3e-12  Score=109.19  Aligned_cols=88  Identities=10%  Similarity=0.062  Sum_probs=73.2

Q ss_pred             CCCEEEEEcCcccHHHHHhc----cceEEEeccC---------------CCCcEEEccCCCCC--CCCCCccEEEEcccc
Q 022592          141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVS---------------NDPSVIACDMSNTP--LNSSSVDVAVFCLSL  199 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~---------------~~~~~~~~d~~~lp--~~~~~fD~Vi~~~~l  199 (294)
                      ++.+|||+|||+|.++..++    ..|+|+|+++               .++.++.+|+.+++  +++++||+|++...+
T Consensus        44 ~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~p~  123 (189)
T 3p9n_A           44 TGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADPPY  123 (189)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECCCT
T ss_pred             CCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECCCC
Confidence            66799999999999988655    3799999997               26789999987754  446889999999888


Q ss_pred             cCC--CHHHHHHHHHH--hcCcCcEEEEEeecC
Q 022592          200 MGI--NFPNYLQEAQR--VLKPSGWLLIAEVKS  228 (294)
Q Consensus       200 ~~~--~~~~~l~el~r--~LkpgG~l~i~e~~~  228 (294)
                      ++.  +...++.++.+  +|+|||.+++.....
T Consensus       124 ~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~  156 (189)
T 3p9n_A          124 NVDSADVDAILAALGTNGWTREGTVAVVERATT  156 (189)
T ss_dssp             TSCHHHHHHHHHHHHHSSSCCTTCEEEEEEETT
T ss_pred             CcchhhHHHHHHHHHhcCccCCCeEEEEEecCC
Confidence            773  67899999999  999999999975443

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.37  E-value=2.8e-13  Score=126.20  Aligned_cols=97  Identities=13%  Similarity=0.177  Sum_probs=78.7

Q ss_pred             HHHHHHHhhccCCCCEEEEEcCcccHHHHHhc----c-ceEEEeccC------------------------CCCcEEEcc
Q 022592          129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK----N-KVFSFDLVS------------------------NDPSVIACD  179 (294)
Q Consensus       129 ~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~----~-~v~gvD~s~------------------------~~~~~~~~d  179 (294)
                      +..++..+... ++.+|||||||+|.++..++    . .|+|+|+++                        .++.++.+|
T Consensus       162 i~~il~~l~l~-~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD  240 (438)
T 3uwp_A          162 VAQMIDEIKMT-DDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGD  240 (438)
T ss_dssp             HHHHHHHHCCC-TTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECC
T ss_pred             HHHHHHhcCCC-CCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECc
Confidence            44455555443 77899999999999988776    2 599999985                        357899999


Q ss_pred             CCCCCCCC--CCccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEee
Q 022592          180 MSNTPLNS--SSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEV  226 (294)
Q Consensus       180 ~~~lp~~~--~~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e~  226 (294)
                      +.++|+.+  ..||+|+++..+++.+....|.+++++|||||.|++.+.
T Consensus       241 ~~~lp~~d~~~~aDVVf~Nn~~F~pdl~~aL~Ei~RvLKPGGrIVssE~  289 (438)
T 3uwp_A          241 FLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKP  289 (438)
T ss_dssp             TTSHHHHHHHHTCSEEEECCTTCCHHHHHHHHHHHTTSCTTCEEEESSC
T ss_pred             ccCCccccccCCccEEEEcccccCchHHHHHHHHHHcCCCCcEEEEeec
Confidence            99988754  479999998777656888999999999999999999753

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.36  E-value=7.4e-12  Score=111.59  Aligned_cols=109  Identities=13%  Similarity=0.161  Sum_probs=86.7

Q ss_pred             CCCEEEEEcCcccHHHHHhc---c-ceEEEeccC----------------CCCcEEEccCCCCCCCCCCccEEEEccccc
Q 022592          141 PSLVIADFGCGDARLAKSVK---N-KVFSFDLVS----------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLM  200 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~---~-~v~gvD~s~----------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~  200 (294)
                      ++.+|||+|||+|.++..++   . .|+|+|+|+                .++.++.+|+.+++. +++||+|++...  
T Consensus       125 ~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~-~~~fD~Vi~~~p--  201 (278)
T 2frn_A          125 PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGYV--  201 (278)
T ss_dssp             TTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECCC--
T ss_pred             CCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc-cCCccEEEECCc--
Confidence            57899999999999998886   2 599999997                236789999998876 678999998644  


Q ss_pred             CCCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEE
Q 022592          201 GINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVS  255 (294)
Q Consensus       201 ~~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~  255 (294)
                       .+...++.++.++|+|||.+++.+.......  .....+.+...++++||.+..
T Consensus       202 -~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~--~~~~~~~i~~~~~~~G~~~~~  253 (278)
T 2frn_A          202 -VRTHEFIPKALSIAKDGAIIHYHNTVPEKLM--PREPFETFKRITKEYGYDVEK  253 (278)
T ss_dssp             -SSGGGGHHHHHHHEEEEEEEEEEEEEEGGGT--TTTTHHHHHHHHHHTTCEEEE
T ss_pred             -hhHHHHHHHHHHHCCCCeEEEEEEeeccccc--cccHHHHHHHHHHHcCCeeEE
Confidence             3456889999999999999999876542111  123567889999999998765

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.35  E-value=2.9e-12  Score=114.86  Aligned_cols=86  Identities=12%  Similarity=0.086  Sum_probs=70.3

Q ss_pred             ccCCCCEEEEEcCcccHHHHH-hc----cceEEEeccC---------------CCCcEEEccCCCCCCCCCCccEEEEcc
Q 022592          138 DHSPSLVIADFGCGDARLAKS-VK----NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVDVAVFCL  197 (294)
Q Consensus       138 ~~~~~~~VLDiGcG~G~~~~~-l~----~~v~gvD~s~---------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~  197 (294)
                      ...++.+|||||||+|.++.. ++    .+|+|+|+++               .++.++++|+..+|  +++||+|++..
T Consensus       119 ~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~--d~~FDvV~~~a  196 (298)
T 3fpf_A          119 RFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVID--GLEFDVLMVAA  196 (298)
T ss_dssp             TCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGG--GCCCSEEEECT
T ss_pred             CCCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCC--CCCcCEEEECC
Confidence            335788999999999976533 22    4899999997               36789999998876  68899999765


Q ss_pred             cccCCCHHHHHHHHHHhcCcCcEEEEEeec
Q 022592          198 SLMGINFPNYLQEAQRVLKPSGWLLIAEVK  227 (294)
Q Consensus       198 ~l~~~~~~~~l~el~r~LkpgG~l~i~e~~  227 (294)
                      .  ..+...+++++.++|||||.|++.+..
T Consensus       197 ~--~~d~~~~l~el~r~LkPGG~Lvv~~~~  224 (298)
T 3fpf_A          197 L--AEPKRRVFRNIHRYVDTETRIIYRTYT  224 (298)
T ss_dssp             T--CSCHHHHHHHHHHHCCTTCEEEEEECC
T ss_pred             C--ccCHHHHHHHHHHHcCCCcEEEEEcCc
Confidence            4  358889999999999999999998643

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=99.35  E-value=1e-12  Score=121.98  Aligned_cols=121  Identities=10%  Similarity=0.092  Sum_probs=85.9

Q ss_pred             cChhhHHHHHHhHHhhhcc-CC--CcHHHHHHHHhhccCCCCEEEEEcCc------ccHHHHHhc------cceEEEecc
Q 022592          105 ENPALFDMYHSGYQEQMSH-WP--ELPVNIIVKWLKDHSPSLVIADFGCG------DARLAKSVK------NKVFSFDLV  169 (294)
Q Consensus       105 ~~~~~~d~~~~~~~~~~~~-~~--~~~~~~~~~~l~~~~~~~~VLDiGcG------~G~~~~~l~------~~v~gvD~s  169 (294)
                      .....|+.....|...... |.  ....+.++..+.  .+..+|||||||      +|..+..++      ..|+|+|+|
T Consensus       179 s~~~~fd~lA~~Y~tDK~~~~h~y~~~Ye~lL~~l~--~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiS  256 (419)
T 3sso_A          179 SRKPDLSELSSRYFTPKFGFLHWFTPHYDRHFRDYR--NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIM  256 (419)
T ss_dssp             CCCCCHHHHHHHTTCTTBSSSCBCHHHHHHHHGGGT--TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESS
T ss_pred             CCCccHHHHHHHhCCCcccccchHHHHHHHHHHhhc--CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECC
Confidence            3344566666666433222 21  123333444333  245699999999      555444333      379999999


Q ss_pred             C------CCCcEEEccCCCCCCC------CCCccEEEEcccccC-CCHHHHHHHHHHhcCcCcEEEEEeecC
Q 022592          170 S------NDPSVIACDMSNTPLN------SSSVDVAVFCLSLMG-INFPNYLQEAQRVLKPSGWLLIAEVKS  228 (294)
Q Consensus       170 ~------~~~~~~~~d~~~lp~~------~~~fD~Vi~~~~l~~-~~~~~~l~el~r~LkpgG~l~i~e~~~  228 (294)
                      +      .++.++++|+.++|+.      +++||+|++..+ ++ .+...++++++++|||||++++.++..
T Consensus       257 p~m~~~~~rI~fv~GDa~dlpf~~~l~~~d~sFDlVisdgs-H~~~d~~~aL~el~rvLKPGGvlVi~Dl~t  327 (419)
T 3sso_A          257 DKSHVDELRIRTIQGDQNDAEFLDRIARRYGPFDIVIDDGS-HINAHVRTSFAALFPHVRPGGLYVIEDMWT  327 (419)
T ss_dssp             CCGGGCBTTEEEEECCTTCHHHHHHHHHHHCCEEEEEECSC-CCHHHHHHHHHHHGGGEEEEEEEEEECGGG
T ss_pred             HHHhhcCCCcEEEEecccccchhhhhhcccCCccEEEECCc-ccchhHHHHHHHHHHhcCCCeEEEEEeccc
Confidence            8      4788999999998877      689999998754 44 478899999999999999999998764

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.35  E-value=7.8e-12  Score=108.28  Aligned_cols=121  Identities=14%  Similarity=0.129  Sum_probs=93.0

Q ss_pred             CCCCEEEEEcCcccHHHHHhc-----cceEEEeccC----------------CCCcEEEccCCCCCCCCCCccEEEEccc
Q 022592          140 SPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSVDVAVFCLS  198 (294)
Q Consensus       140 ~~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~----------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~  198 (294)
                      +++.+|||||||+|.++..++     ..|+|+|+++                +++.+..+|......+.+.||+|+....
T Consensus        20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~IviaGm   99 (230)
T 3lec_A           20 PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITICGM   99 (230)
T ss_dssp             CTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred             CCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEeCC
Confidence            366799999999999998886     2799999997                3588999999876655557999886544


Q ss_pred             ccCCCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEEe---ccCCeEEEEEEEEC
Q 022592          199 LMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSKD---FSNKMFIMFYFKKK  271 (294)
Q Consensus       199 l~~~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~---~~~~~f~~i~~~k~  271 (294)
                      .- .-...++.+..+.|+++|.|++....          ..+.+.++|.+.||.++...   ....+|.++.+++.
T Consensus       100 Gg-~lI~~IL~~~~~~l~~~~~lIlqp~~----------~~~~lr~~L~~~Gf~i~~E~lv~e~~~~Yeii~~~~~  164 (230)
T 3lec_A          100 GG-RLIADILNNDIDKLQHVKTLVLQPNN----------REDDLRKWLAANDFEIVAEDILTENDKRYEILVVKHG  164 (230)
T ss_dssp             CH-HHHHHHHHHTGGGGTTCCEEEEEESS----------CHHHHHHHHHHTTEEEEEEEEEEC--CEEEEEEEEEC
T ss_pred             ch-HHHHHHHHHHHHHhCcCCEEEEECCC----------ChHHHHHHHHHCCCEEEEEEEEEECCEEEEEEEEEeC
Confidence            22 12457788888999999999997632          46899999999999998844   34556777777664

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.34  E-value=1.6e-12  Score=117.47  Aligned_cols=125  Identities=17%  Similarity=0.199  Sum_probs=93.3

Q ss_pred             HHHHhhcc-CCCCEEEEEcCcccHHHHHhc----cceEEEeccCC----------------------CCcEEEccCCCCC
Q 022592          132 IVKWLKDH-SPSLVIADFGCGDARLAKSVK----NKVFSFDLVSN----------------------DPSVIACDMSNTP  184 (294)
Q Consensus       132 ~~~~l~~~-~~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~~----------------------~~~~~~~d~~~lp  184 (294)
                      +++.+... .++.+|||||||+|.++..++    ..++|+|+|+.                      ++.++++|+..++
T Consensus        24 ~~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~  103 (313)
T 3bgv_A           24 FLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKEL  103 (313)
T ss_dssp             HHHHHHHTC--CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSC
T ss_pred             HHHHhhhccCCCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccc
Confidence            44444332 255799999999999888776    37999999872                      4678999998876


Q ss_pred             ----CC--CCCccEEEEcccccCC--C---HHHHHHHHHHhcCcCcEEEEEeecC-----------------C-----CC
Q 022592          185 ----LN--SSSVDVAVFCLSLMGI--N---FPNYLQEAQRVLKPSGWLLIAEVKS-----------------R-----FD  231 (294)
Q Consensus       185 ----~~--~~~fD~Vi~~~~l~~~--~---~~~~l~el~r~LkpgG~l~i~e~~~-----------------~-----~~  231 (294)
                          ++  +++||+|++..++||.  +   +..++.++.++|+|||.+++..+..                 .     +.
T Consensus       104 ~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~f~  183 (313)
T 3bgv_A          104 LIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNSFELIRRLEASETESFGNEIYTVKFQ  183 (313)
T ss_dssp             STTTCSSTTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHHHHHTTSSSSEEECSSEEEEES
T ss_pred             hhhhcccCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCChHHHHHHHHhhccCccCCeeEEEEeC
Confidence                53  4589999999999884  3   4689999999999999999975421                 0     11


Q ss_pred             CC--C-------------------CCCCHHHHHHHHHHCCCeEEEE
Q 022592          232 PN--T-------------------GGADPNKFSKAVCDLGFAPVSK  256 (294)
Q Consensus       232 ~~--~-------------------~~~~~~~~~~~l~~~Gf~~~~~  256 (294)
                      ..  .                   ...+.+++..++++.||+++..
T Consensus       184 ~~~~~~~~~~~~~f~l~~~~~~~~~~~~~~~~~~l~~~~G~~~v~~  229 (313)
T 3bgv_A          184 KKGDYPLFGCKYDFNLEGVVDVPEFLVYFPLLNEMAKKYNMKLVYK  229 (313)
T ss_dssp             CSSCCCSSCCEEEEEEC---CCEEECCCHHHHHHHGGGGTEEEEEE
T ss_pred             CCCCCCCccceEEEEECCcccCcceEEcHHHHHHHHHHcCcEEEEe
Confidence            10  0                   0146788999999999999873

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.33  E-value=5.8e-12  Score=109.98  Aligned_cols=114  Identities=16%  Similarity=0.150  Sum_probs=88.6

Q ss_pred             HHHHHHhhccCCCCEEEEEcCcccHHHHHhc------cceEEEeccC----------------CCCcEEEccCCCCCCCC
Q 022592          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----------------NDPSVIACDMSNTPLNS  187 (294)
Q Consensus       130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~----------------~~~~~~~~d~~~lp~~~  187 (294)
                      ..++..+... ++.+|||+|||+|.++..++      ..|+++|+++                .++.+..+|+.+.++++
T Consensus        86 ~~~~~~~~~~-~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~  164 (258)
T 2pwy_A           86 SAMVTLLDLA-PGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEE  164 (258)
T ss_dssp             HHHHHHTTCC-TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCT
T ss_pred             HHHHHHcCCC-CCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCC
Confidence            3455555433 67799999999999887765      3799999986                35778899998887888


Q ss_pred             CCccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEE
Q 022592          188 SSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSK  256 (294)
Q Consensus       188 ~~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~  256 (294)
                      ++||+|++.    ..++..++.++.++|+|||.+++......        ...++...+++.||..+..
T Consensus       165 ~~~D~v~~~----~~~~~~~l~~~~~~L~~gG~l~~~~~~~~--------~~~~~~~~l~~~gf~~~~~  221 (258)
T 2pwy_A          165 AAYDGVALD----LMEPWKVLEKAALALKPDRFLVAYLPNIT--------QVLELVRAAEAHPFRLERV  221 (258)
T ss_dssp             TCEEEEEEE----SSCGGGGHHHHHHHEEEEEEEEEEESCHH--------HHHHHHHHHTTTTEEEEEE
T ss_pred             CCcCEEEEC----CcCHHHHHHHHHHhCCCCCEEEEEeCCHH--------HHHHHHHHHHHCCCceEEE
Confidence            899999973    34667899999999999999999763211        2356778888899987763

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.33  E-value=2.7e-12  Score=111.82  Aligned_cols=108  Identities=13%  Similarity=0.096  Sum_probs=81.4

Q ss_pred             CCCEEEEEcCcccHHHHHhc---------cceEEEeccCC----------CCcEEEccCCCC---CCCC-CCccEEEEcc
Q 022592          141 PSLVIADFGCGDARLAKSVK---------NKVFSFDLVSN----------DPSVIACDMSNT---PLNS-SSVDVAVFCL  197 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~---------~~v~gvD~s~~----------~~~~~~~d~~~l---p~~~-~~fD~Vi~~~  197 (294)
                      ++.+|||||||+|..+..++         .+|+|+|+++.          ++.++.+|+...   +... .+||+|++..
T Consensus        81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~  160 (236)
T 2bm8_A           81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDN  160 (236)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEES
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEECC
Confidence            45699999999999877653         47999999983          578899999874   5433 4799999866


Q ss_pred             cccCCCHHHHHHHHHH-hcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHC--CCeEE
Q 022592          198 SLMGINFPNYLQEAQR-VLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDL--GFAPV  254 (294)
Q Consensus       198 ~l~~~~~~~~l~el~r-~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~--Gf~~~  254 (294)
                      .  |.+...++.++.+ +|+|||+|++.++...+    ..++...+..+++..  +|.++
T Consensus       161 ~--~~~~~~~l~~~~r~~LkpGG~lv~~d~~~~~----~~~~~~~~~~~l~~~~~~f~~~  214 (236)
T 2bm8_A          161 A--HANTFNIMKWAVDHLLEEGDYFIIEDMIPYW----YRYAPQLFSEYLGAFRDVLSMD  214 (236)
T ss_dssp             S--CSSHHHHHHHHHHHTCCTTCEEEECSCHHHH----HHHCHHHHHHHHHTTTTTEEEE
T ss_pred             c--hHhHHHHHHHHHHhhCCCCCEEEEEeCcccc----cccCHHHHHHHHHhCcccEEEc
Confidence            5  5688899999997 99999999997652111    112445778888887  56654

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.32  E-value=2.5e-12  Score=114.25  Aligned_cols=111  Identities=12%  Similarity=0.120  Sum_probs=83.7

Q ss_pred             HHHHhhccCCCCEEEEEcCcccHHHHHhc------cceEEEeccC----------------CCCcEEEccCCCCCCCCCC
Q 022592          132 IVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSS  189 (294)
Q Consensus       132 ~~~~l~~~~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~----------------~~~~~~~~d~~~lp~~~~~  189 (294)
                      ++..+.. .++.+|||+|||+|.++..++      ..|+|+|+++                .++.+..+|+.. ++++++
T Consensus       102 ~~~~~~~-~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~-~~~~~~  179 (275)
T 1yb2_A          102 IIMRCGL-RPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIAD-FISDQM  179 (275)
T ss_dssp             ----CCC-CTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTT-CCCSCC
T ss_pred             HHHHcCC-CCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhc-cCcCCC
Confidence            4444433 367799999999999887765      3799999986                246788899887 666788


Q ss_pred             ccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEE
Q 022592          190 VDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSK  256 (294)
Q Consensus       190 fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~  256 (294)
                      ||+|++    +..++..++.++.++|+|||.+++......        ....+.+.+++.||..+..
T Consensus       180 fD~Vi~----~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~--------~~~~~~~~l~~~Gf~~~~~  234 (275)
T 1yb2_A          180 YDAVIA----DIPDPWNHVQKIASMMKPGSVATFYLPNFD--------QSEKTVLSLSASGMHHLET  234 (275)
T ss_dssp             EEEEEE----CCSCGGGSHHHHHHTEEEEEEEEEEESSHH--------HHHHHHHHSGGGTEEEEEE
T ss_pred             ccEEEE----cCcCHHHHHHHHHHHcCCCCEEEEEeCCHH--------HHHHHHHHHHHCCCeEEEE
Confidence            999998    234778999999999999999999863211        2366778888999988763

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.32  E-value=1.6e-11  Score=108.29  Aligned_cols=123  Identities=14%  Similarity=0.176  Sum_probs=90.2

Q ss_pred             CCCCEEEEEcCcccHHHHHhc-----cceEEEeccC-----------C--------CCcEEEccCCCC-------CCCCC
Q 022592          140 SPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS-----------N--------DPSVIACDMSNT-------PLNSS  188 (294)
Q Consensus       140 ~~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~-----------~--------~~~~~~~d~~~l-------p~~~~  188 (294)
                      .++.+|||+|||+|.++..++     ..|+|+|+++           .        ++.++.+|+.+.       +++++
T Consensus        35 ~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~  114 (260)
T 2ozv_A           35 DRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPDE  114 (260)
T ss_dssp             CSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCTT
T ss_pred             cCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCCC
Confidence            356799999999999988776     3799999986           1        267899999886       35678


Q ss_pred             CccEEEEcccccC-------------------CCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHC
Q 022592          189 SVDVAVFCLSLMG-------------------INFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDL  249 (294)
Q Consensus       189 ~fD~Vi~~~~l~~-------------------~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~  249 (294)
                      +||+|+++..+..                   .+...++..+.++|+|||.|+++.-..         ...++...+.+.
T Consensus       115 ~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~---------~~~~~~~~l~~~  185 (260)
T 2ozv_A          115 HFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRPQ---------SVAEIIAACGSR  185 (260)
T ss_dssp             CEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECGG---------GHHHHHHHHTTT
T ss_pred             CcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcHH---------HHHHHHHHHHhc
Confidence            9999999844332                   146789999999999999999863211         346777888774


Q ss_pred             CCeEEEEec------cCCeEEEEEEEECC
Q 022592          250 GFAPVSKDF------SNKMFIMFYFKKKE  272 (294)
Q Consensus       250 Gf~~~~~~~------~~~~f~~i~~~k~~  272 (294)
                       |....+..      .....+++.++|..
T Consensus       186 -~~~~~i~~v~~~~~~~~~~~lv~~~k~~  213 (260)
T 2ozv_A          186 -FGGLEITLIHPRPGEDAVRMLVTAIKGS  213 (260)
T ss_dssp             -EEEEEEEEEESSTTSCCCEEEEEEEETC
T ss_pred             -CCceEEEEEcCCCCCCceEEEEEEEeCC
Confidence             76655322      33456788888754

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.31  E-value=1.9e-11  Score=105.61  Aligned_cols=120  Identities=15%  Similarity=0.132  Sum_probs=90.3

Q ss_pred             CCCCEEEEEcCcccHHHHHhc-----cceEEEeccC----------------CCCcEEEccCCC-CCCCCCCccEEEEcc
Q 022592          140 SPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS----------------NDPSVIACDMSN-TPLNSSSVDVAVFCL  197 (294)
Q Consensus       140 ~~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~----------------~~~~~~~~d~~~-lp~~~~~fD~Vi~~~  197 (294)
                      +++.+|||||||+|.++..++     ..|+|+|+++                +++.+..+|... ++. .+.||+|+...
T Consensus        14 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~-~~~~D~IviaG   92 (225)
T 3kr9_A           14 SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEE-TDQVSVITIAG   92 (225)
T ss_dssp             CTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG-GGCCCEEEEEE
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhccc-CcCCCEEEEcC
Confidence            366799999999999998886     2799999997                257889999854 432 23699988754


Q ss_pred             cccCCCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEEe---ccCCeEEEEEEEEC
Q 022592          198 SLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSKD---FSNKMFIMFYFKKK  271 (294)
Q Consensus       198 ~l~~~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~---~~~~~f~~i~~~k~  271 (294)
                      +.- .-...++.++...|+|+|+|++....          ..+.+.++|.+.||.++...   ....+|.++.+++.
T Consensus        93 ~Gg-~~i~~Il~~~~~~L~~~~~lVlq~~~----------~~~~vr~~L~~~Gf~i~~e~lv~e~~~~Yeii~~~~~  158 (225)
T 3kr9_A           93 MGG-RLIARILEEGLGKLANVERLILQPNN----------REDDLRIWLQDHGFQIVAESILEEAGKFYEILVVEAG  158 (225)
T ss_dssp             ECH-HHHHHHHHHTGGGCTTCCEEEEEESS----------CHHHHHHHHHHTTEEEEEEEEEEETTEEEEEEEEEES
T ss_pred             CCh-HHHHHHHHHHHHHhCCCCEEEEECCC----------CHHHHHHHHHHCCCEEEEEEEEEECCEEEEEEEEEeC
Confidence            411 12468889999999999999986431          45889999999999998843   34555667776654

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.30  E-value=1.7e-12  Score=108.83  Aligned_cols=125  Identities=14%  Similarity=0.077  Sum_probs=92.5

Q ss_pred             CCCEEEEEcCcccHHHHHhc-----cceEEEeccCC------------CC--cEEEccCCCCCCCCCCccEEEEcccccC
Q 022592          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVSN------------DP--SVIACDMSNTPLNSSSVDVAVFCLSLMG  201 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~~------------~~--~~~~~d~~~lp~~~~~fD~Vi~~~~l~~  201 (294)
                      +..+|||||||+|.++..++     ..|+|+|+++.            .+  .+..+|.... .+.++||+|++..+||+
T Consensus        49 ~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~~d~~~~-~~~~~~DvVLa~k~LHl  127 (200)
T 3fzg_A           49 HVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRFLNKESD-VYKGTYDVVFLLKMLPV  127 (200)
T ss_dssp             CCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEEECCHHH-HTTSEEEEEEEETCHHH
T ss_pred             CCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEEeccccc-CCCCCcChhhHhhHHHh
Confidence            56799999999999999884     48999999981            12  3455666544 35678999999999999


Q ss_pred             C-CHHHHHHHHHHhcCcCcEEEEEeecCCCCCC--CCCCCHHHHHHHHHHCCCeEEEEeccCCeEEEE
Q 022592          202 I-NFPNYLQEAQRVLKPSGWLLIAEVKSRFDPN--TGGADPNKFSKAVCDLGFAPVSKDFSNKMFIMF  266 (294)
Q Consensus       202 ~-~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~--~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~f~~i  266 (294)
                      . +....+..+.+.|+|||.++-.+..+-..+.  ........|...+...++.+....+.+..+|++
T Consensus       128 L~~~~~al~~v~~~L~pggvfISfptksl~Gr~~gm~~~Y~~~~~~~~~~~~~~~~~~~~~nEl~y~~  195 (200)
T 3fzg_A          128 LKQQDVNILDFLQLFHTQNFVISFPIKSLSGKEKGMEENYQLWFESFTKGWIKILDSKVIGNELVYIT  195 (200)
T ss_dssp             HHHTTCCHHHHHHTCEEEEEEEEEECCCCC--CTTCCCCHHHHHHHHTTTTSCEEEEEEETTEEEEEE
T ss_pred             hhhhHHHHHHHHHHhCCCCEEEEeChHHhcCCCcchhhhHHHHHHHhccCcceeeeeeeeCceEEEEE
Confidence            6 4556777999999999999988743332222  222344667777766667777788899888877

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.30  E-value=1.4e-11  Score=107.51  Aligned_cols=122  Identities=15%  Similarity=0.052  Sum_probs=92.8

Q ss_pred             CCCCEEEEEcCcccHHHHHhc-----cceEEEeccC----------------CCCcEEEccCCCCCCCCCCccEEEEccc
Q 022592          140 SPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSVDVAVFCLS  198 (294)
Q Consensus       140 ~~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~----------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~  198 (294)
                      +++.+|||||||+|.++..++     ..|+|+|+++                +++.+..+|......+..+||+|++..+
T Consensus        20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Iviagm   99 (244)
T 3gnl_A           20 TKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAGM   99 (244)
T ss_dssp             CSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred             CCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEeCC
Confidence            366799999999999998886     2799999997                2478999998876554446999887543


Q ss_pred             ccCCCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEE---EeccCCeEEEEEEEECC
Q 022592          199 LMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVS---KDFSNKMFIMFYFKKKE  272 (294)
Q Consensus       199 l~~~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~---~~~~~~~f~~i~~~k~~  272 (294)
                      .- .-...++.+..+.|+++|+|++....          ..+.+.++|.+.||.++.   +......|.++.+++..
T Consensus       100 Gg-~lI~~IL~~~~~~L~~~~~lIlq~~~----------~~~~lr~~L~~~Gf~i~~E~lv~e~~k~Yeii~~~~~~  165 (244)
T 3gnl_A          100 GG-TLIRTILEEGAAKLAGVTKLILQPNI----------AAWQLREWSEQNNWLITSEAILREDNKVYEIMVLAPSE  165 (244)
T ss_dssp             CH-HHHHHHHHHTGGGGTTCCEEEEEESS----------CHHHHHHHHHHHTEEEEEEEEEEETTEEEEEEEEEECS
T ss_pred             ch-HHHHHHHHHHHHHhCCCCEEEEEcCC----------ChHHHHHHHHHCCCEEEEEEEEEECCEEEEEEEEEeCC
Confidence            21 12457888889999999999997532          458899999999999976   33455566677776653

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.30  E-value=5.1e-12  Score=107.15  Aligned_cols=91  Identities=15%  Similarity=0.144  Sum_probs=74.4

Q ss_pred             HHHHHHHhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccC---------------CCCcEEEccCCCCCCCCCCc
Q 022592          129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSV  190 (294)
Q Consensus       129 ~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~---------------~~~~~~~~d~~~lp~~~~~f  190 (294)
                      +..++..+... ++.+|||||||+|.++..++   ..|+++|+++               .++.+..+|+...+.+.++|
T Consensus        66 ~~~~~~~l~~~-~~~~vLdiG~G~G~~~~~la~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  144 (210)
T 3lbf_A           66 VARMTELLELT-PQSRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPF  144 (210)
T ss_dssp             HHHHHHHTTCC-TTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCE
T ss_pred             HHHHHHhcCCC-CCCEEEEEcCCCCHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCCCc
Confidence            34455555444 67899999999999988886   4899999987               35789999998876667899


Q ss_pred             cEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEe
Q 022592          191 DVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAE  225 (294)
Q Consensus       191 D~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e  225 (294)
                      |+|++..++++...     ++.++|+|||++++..
T Consensus       145 D~i~~~~~~~~~~~-----~~~~~L~pgG~lv~~~  174 (210)
T 3lbf_A          145 DAIIVTAAPPEIPT-----ALMTQLDEGGILVLPV  174 (210)
T ss_dssp             EEEEESSBCSSCCT-----HHHHTEEEEEEEEEEE
T ss_pred             cEEEEccchhhhhH-----HHHHhcccCcEEEEEE
Confidence            99999999988642     5899999999999964

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.30  E-value=5.5e-12  Score=116.08  Aligned_cols=83  Identities=19%  Similarity=0.242  Sum_probs=71.3

Q ss_pred             CCCEEEEEcCcccHHHHHhc----cceEEEeccC---------------CCCcEEEccCCCCCCCCCCccEEEEcccccC
Q 022592          141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMG  201 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~---------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~  201 (294)
                      ++.+|||||||+|.++..++    .+|+|+|+|+               .++.++.+|+..+++++++||+|++..+.++
T Consensus        66 ~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~~~  145 (349)
T 3q7e_A           66 KDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYC  145 (349)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHTTCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBBT
T ss_pred             CCCEEEEEeccchHHHHHHHHCCCCEEEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEcccccc
Confidence            56799999999999988886    3899999996               2378999999999998899999999765433


Q ss_pred             ----CCHHHHHHHHHHhcCcCcEEEE
Q 022592          202 ----INFPNYLQEAQRVLKPSGWLLI  223 (294)
Q Consensus       202 ----~~~~~~l~el~r~LkpgG~l~i  223 (294)
                          .+...++.++.++|+|||.++.
T Consensus       146 l~~~~~~~~~l~~~~r~LkpgG~li~  171 (349)
T 3q7e_A          146 LFYESMLNTVLHARDKWLAPDGLIFP  171 (349)
T ss_dssp             BTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             ccCchhHHHHHHHHHHhCCCCCEEcc
Confidence                3788999999999999999875

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.29  E-value=6.9e-12  Score=116.80  Aligned_cols=85  Identities=14%  Similarity=0.221  Sum_probs=73.8

Q ss_pred             CCCEEEEEcCcccHHHHHhc---cceEEEeccC--------------CCCcEEEccCCCCCCCCCCccEEEEcccccC--
Q 022592          141 PSLVIADFGCGDARLAKSVK---NKVFSFDLVS--------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMG--  201 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~--------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~--  201 (294)
                      ++.+|||+|||+|.++..++   ..|+|+|+++              ..+.++.+|+...+.++++||+|+++..+++  
T Consensus       233 ~~~~VLDlGcG~G~~~~~la~~g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~~~~  312 (381)
T 3dmg_A          233 RGRQVLDLGAGYGALTLPLARMGAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPPFHVGG  312 (381)
T ss_dssp             TTCEEEEETCTTSTTHHHHHHTTCEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCCCTTC
T ss_pred             CCCEEEEEeeeCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCchhhcc
Confidence            56799999999999998887   4899999997              1478999999988777789999999999987  


Q ss_pred             ---C-CHHHHHHHHHHhcCcCcEEEEEe
Q 022592          202 ---I-NFPNYLQEAQRVLKPSGWLLIAE  225 (294)
Q Consensus       202 ---~-~~~~~l~el~r~LkpgG~l~i~e  225 (294)
                         . +...++.++.++|+|||.++++.
T Consensus       313 ~~~~~~~~~~l~~~~~~LkpGG~l~iv~  340 (381)
T 3dmg_A          313 AVILDVAQAFVNVAAARLRPGGVFFLVS  340 (381)
T ss_dssp             SSCCHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccHHHHHHHHHHHHHhcCcCcEEEEEE
Confidence               2 45689999999999999999974

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=99.29  E-value=7.9e-12  Score=104.59  Aligned_cols=107  Identities=17%  Similarity=0.299  Sum_probs=78.4

Q ss_pred             CCCCEEEEEcCcccHHHHHhc--------------cceEEEeccCC----CCcEE-EccCCCCC--------CCCCCccE
Q 022592          140 SPSLVIADFGCGDARLAKSVK--------------NKVFSFDLVSN----DPSVI-ACDMSNTP--------LNSSSVDV  192 (294)
Q Consensus       140 ~~~~~VLDiGcG~G~~~~~l~--------------~~v~gvD~s~~----~~~~~-~~d~~~lp--------~~~~~fD~  192 (294)
                      .++.+|||||||+|.++..++              ..|+|+|+|+.    ++.++ .+|+...+        +++++||+
T Consensus        21 ~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~fD~  100 (196)
T 2nyu_A           21 RPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFPLEGATFLCPADVTDPRTSQRILEVLPGRRADV  100 (196)
T ss_dssp             CTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCCCCTTCEEECSCCTTSHHHHHHHHHHSGGGCEEE
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcccCCCCeEEEeccCCCHHHHHHHHHhcCCCCCcE
Confidence            467899999999999888775              35899999983    46788 88887643        34568999


Q ss_pred             EEEcccccCC-----CH-------HHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEE
Q 022592          193 AVFCLSLMGI-----NF-------PNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVS  255 (294)
Q Consensus       193 Vi~~~~l~~~-----~~-------~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~  255 (294)
                      |++..+++..     +.       ..++.++.++|+|||.|++..+...        ....+...+... |..+.
T Consensus       101 V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~--------~~~~~~~~l~~~-f~~v~  166 (196)
T 2nyu_A          101 ILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGS--------QSRRLQRRLTEE-FQNVR  166 (196)
T ss_dssp             EEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCSG--------GGHHHHHHHHHH-EEEEE
T ss_pred             EEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCc--------cHHHHHHHHHHH-hcceE
Confidence            9997765531     22       4789999999999999999765431        225666666653 55444

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.29  E-value=4.5e-12  Score=110.35  Aligned_cols=85  Identities=16%  Similarity=0.294  Sum_probs=67.8

Q ss_pred             CCCEEEEEcCcccHHHHHhcc-----ceEEEeccC---------------------CCCcEEEccCCC-CC--CCCCCcc
Q 022592          141 PSLVIADFGCGDARLAKSVKN-----KVFSFDLVS---------------------NDPSVIACDMSN-TP--LNSSSVD  191 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~~-----~v~gvD~s~---------------------~~~~~~~~d~~~-lp--~~~~~fD  191 (294)
                      ++.+|||||||+|.++..++.     .|+|+|+|+                     .++.++.+|+.. ++  +++++||
T Consensus        46 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~D  125 (235)
T 3ckk_A           46 AQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQLT  125 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCEE
T ss_pred             CCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCee
Confidence            456899999999999998872     699999974                     357889999986 66  7789999


Q ss_pred             EEEEcccccCC---------CHHHHHHHHHHhcCcCcEEEEEe
Q 022592          192 VAVFCLSLMGI---------NFPNYLQEAQRVLKPSGWLLIAE  225 (294)
Q Consensus       192 ~Vi~~~~l~~~---------~~~~~l~el~r~LkpgG~l~i~e  225 (294)
                      .|++.+...|.         ....++.++.++|+|||.|++..
T Consensus       126 ~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~t  168 (235)
T 3ckk_A          126 KMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTIT  168 (235)
T ss_dssp             EEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEe
Confidence            99876554332         12479999999999999999863

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.28  E-value=5.1e-12  Score=111.30  Aligned_cols=82  Identities=21%  Similarity=0.436  Sum_probs=70.3

Q ss_pred             CCCEEEEEcCcccHHHHHhc-----cceEEEeccC----------CCCcEEEccCCCCCCCCCCccEEEEcccccCCCHH
Q 022592          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS----------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGINFP  205 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~----------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~~~~  205 (294)
                      ++.+|||||||+|.++..++     ..|+|+|+|+          .++.+..+|+..+|+++++||+|++..+.      
T Consensus        85 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~------  158 (269)
T 1p91_A           85 KATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAP------  158 (269)
T ss_dssp             TCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCC------
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCCh------
Confidence            56799999999999888775     3799999997          46789999999999988999999987663      


Q ss_pred             HHHHHHHHhcCcCcEEEEEeecC
Q 022592          206 NYLQEAQRVLKPSGWLLIAEVKS  228 (294)
Q Consensus       206 ~~l~el~r~LkpgG~l~i~e~~~  228 (294)
                      .++.++.++|+|||.+++.....
T Consensus       159 ~~l~~~~~~L~pgG~l~~~~~~~  181 (269)
T 1p91_A          159 CKAEELARVVKPGGWVITATPGP  181 (269)
T ss_dssp             CCHHHHHHHEEEEEEEEEEEECT
T ss_pred             hhHHHHHHhcCCCcEEEEEEcCH
Confidence            35899999999999999986543

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.28  E-value=1.9e-12  Score=111.38  Aligned_cols=85  Identities=12%  Similarity=0.146  Sum_probs=69.7

Q ss_pred             CCCEEEEEcCcccHHHHHhc-----cceEEEeccC---------------CCCcEEEccCCCC-C--CCCCCccEEEEcc
Q 022592          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSNT-P--LNSSSVDVAVFCL  197 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~---------------~~~~~~~~d~~~l-p--~~~~~fD~Vi~~~  197 (294)
                      ++.+|||||||+|.++..++     ..|+|+|+|+               .++.++.+|+..+ +  +++++||.|++.+
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~  113 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFF  113 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEES
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeC
Confidence            45699999999999998887     2599999997               3678999998774 3  6789999999986


Q ss_pred             cccCCC---------HHHHHHHHHHhcCcCcEEEEEe
Q 022592          198 SLMGIN---------FPNYLQEAQRVLKPSGWLLIAE  225 (294)
Q Consensus       198 ~l~~~~---------~~~~l~el~r~LkpgG~l~i~e  225 (294)
                      ...+..         ...++.++.++|+|||.|++..
T Consensus       114 ~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~t  150 (218)
T 3dxy_A          114 PDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMAT  150 (218)
T ss_dssp             CCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEe
Confidence            655431         1369999999999999999975

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.28  E-value=1.1e-11  Score=113.67  Aligned_cols=83  Identities=22%  Similarity=0.265  Sum_probs=70.8

Q ss_pred             CCCCEEEEEcCcccHHHHHhc----cceEEEeccC---------------CCCcEEEccCCCCCCCCCCccEEEEcc---
Q 022592          140 SPSLVIADFGCGDARLAKSVK----NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVDVAVFCL---  197 (294)
Q Consensus       140 ~~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~---------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~---  197 (294)
                      .++.+|||||||+|.++..++    ..|+|+|+|+               .++.++.+|+.++++++++||+|++..   
T Consensus        63 ~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~~  142 (340)
T 2fyt_A           63 FKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGY  142 (340)
T ss_dssp             TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCCBT
T ss_pred             cCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcEEEEEEcCchh
Confidence            367799999999999988876    3799999996               367899999999998888999999876   


Q ss_pred             cccCC-CHHHHHHHHHHhcCcCcEEE
Q 022592          198 SLMGI-NFPNYLQEAQRVLKPSGWLL  222 (294)
Q Consensus       198 ~l~~~-~~~~~l~el~r~LkpgG~l~  222 (294)
                      .+.+. +...++.++.++|+|||.++
T Consensus       143 ~l~~~~~~~~~l~~~~~~LkpgG~li  168 (340)
T 2fyt_A          143 FLLFESMLDSVLYAKNKYLAKGGSVY  168 (340)
T ss_dssp             TBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             hccCHHHHHHHHHHHHhhcCCCcEEE
Confidence            34443 56789999999999999998

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=99.27  E-value=2e-11  Score=108.72  Aligned_cols=84  Identities=15%  Similarity=0.204  Sum_probs=66.9

Q ss_pred             CCCEEEEEcCcccH----HHHHhc---------cceEEEeccCC------------------------------------
Q 022592          141 PSLVIADFGCGDAR----LAKSVK---------NKVFSFDLVSN------------------------------------  171 (294)
Q Consensus       141 ~~~~VLDiGcG~G~----~~~~l~---------~~v~gvD~s~~------------------------------------  171 (294)
                      +..+|||+|||+|.    ++..++         ..|+|+|+|+.                                    
T Consensus       105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~  184 (274)
T 1af7_A          105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  184 (274)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence            34689999999998    444333         16999999861                                    


Q ss_pred             ----------CCcEEEccCCCCCCC-CCCccEEEEcccccCCCH---HHHHHHHHHhcCcCcEEEEE
Q 022592          172 ----------DPSVIACDMSNTPLN-SSSVDVAVFCLSLMGINF---PNYLQEAQRVLKPSGWLLIA  224 (294)
Q Consensus       172 ----------~~~~~~~d~~~lp~~-~~~fD~Vi~~~~l~~~~~---~~~l~el~r~LkpgG~l~i~  224 (294)
                                ++.|...|+.+.|++ .+.||+|+|..+++|+++   ..++.++.++|+|||+|++.
T Consensus       185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg  251 (274)
T 1af7_A          185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG  251 (274)
T ss_dssp             EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred             ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence                      245677888876665 578999999999998754   58999999999999999984

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.27  E-value=9.6e-12  Score=108.69  Aligned_cols=114  Identities=17%  Similarity=0.270  Sum_probs=87.4

Q ss_pred             HHHHHHhhccCCCCEEEEEcCcccHHHHHhc------cceEEEeccC----------------CCCcEEEccCCCCCCCC
Q 022592          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----------------NDPSVIACDMSNTPLNS  187 (294)
Q Consensus       130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~----------------~~~~~~~~d~~~lp~~~  187 (294)
                      ..++..+... ++.+|||+|||+|.++..++      ..|+++|+++                .++.+..+|+.+. +++
T Consensus        83 ~~i~~~~~~~-~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~  160 (255)
T 3mb5_A           83 ALIVAYAGIS-PGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEG-IEE  160 (255)
T ss_dssp             HHHHHHTTCC-TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGC-CCC
T ss_pred             HHHHHhhCCC-CCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhc-cCC
Confidence            3455555443 67799999999999888775      3799999996                2378899998854 667


Q ss_pred             CCccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCC--CeEEEEe
Q 022592          188 SSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLG--FAPVSKD  257 (294)
Q Consensus       188 ~~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~G--f~~~~~~  257 (294)
                      ++||+|++.    ..++..++.++.++|+|||.+++......        ....+...+++.|  |..+...
T Consensus       161 ~~~D~v~~~----~~~~~~~l~~~~~~L~~gG~l~~~~~~~~--------~~~~~~~~l~~~g~~f~~~~~~  220 (255)
T 3mb5_A          161 ENVDHVILD----LPQPERVVEHAAKALKPGGFFVAYTPCSN--------QVMRLHEKLREFKDYFMKPRTI  220 (255)
T ss_dssp             CSEEEEEEC----SSCGGGGHHHHHHHEEEEEEEEEEESSHH--------HHHHHHHHHHHTGGGBSCCEEE
T ss_pred             CCcCEEEEC----CCCHHHHHHHHHHHcCCCCEEEEEECCHH--------HHHHHHHHHHHcCCCccccEEE
Confidence            889999973    24677899999999999999999753211        3467888899999  9776643

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.26  E-value=8e-12  Score=116.15  Aligned_cols=85  Identities=22%  Similarity=0.244  Sum_probs=71.2

Q ss_pred             CCCCEEEEEcCcccHHHHHhc----cceEEEeccC---------------CCCcEEEccCCCCCCCCCCccEEEEccccc
Q 022592          140 SPSLVIADFGCGDARLAKSVK----NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLM  200 (294)
Q Consensus       140 ~~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~---------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~  200 (294)
                      .++.+|||||||+|.++..++    .+|+|+|+|.               .++.++.+|+.+++++ ++||+|++..+.+
T Consensus        62 ~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Iv~~~~~~  140 (376)
T 3r0q_C           62 FEGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLP-EKVDVIISEWMGY  140 (376)
T ss_dssp             TTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGGGCCCS-SCEEEEEECCCBT
T ss_pred             CCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccHHHHHHHHHHHHHcCCCCeEEEEECchhhcCcC-CcceEEEEcChhh
Confidence            367799999999999988876    2899999994               2378999999998877 8899999966555


Q ss_pred             C----CCHHHHHHHHHHhcCcCcEEEEEe
Q 022592          201 G----INFPNYLQEAQRVLKPSGWLLIAE  225 (294)
Q Consensus       201 ~----~~~~~~l~el~r~LkpgG~l~i~e  225 (294)
                      +    ..+..++.++.++|+|||.|++..
T Consensus       141 ~l~~e~~~~~~l~~~~~~LkpgG~li~~~  169 (376)
T 3r0q_C          141 FLLRESMFDSVISARDRWLKPTGVMYPSH  169 (376)
T ss_dssp             TBTTTCTHHHHHHHHHHHEEEEEEEESSE
T ss_pred             cccchHHHHHHHHHHHhhCCCCeEEEEec
Confidence            4    257789999999999999998854

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.26  E-value=3e-11  Score=105.52  Aligned_cols=96  Identities=15%  Similarity=0.184  Sum_probs=72.3

Q ss_pred             HHHHHHhhccCCCCEEEEEcCcccHHHHHhc------cceEEEeccC----------------CCCcEEEccCCCC-CCC
Q 022592          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----------------NDPSVIACDMSNT-PLN  186 (294)
Q Consensus       130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~----------------~~~~~~~~d~~~l-p~~  186 (294)
                      ..++..+....++.+|||||||+|..+..++      ..|+++|+++                .++.++.+|+... +..
T Consensus        49 ~~~l~~l~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~  128 (242)
T 3r3h_A           49 AQFMQMLIRLTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSL  128 (242)
T ss_dssp             HHHHHHHHHHHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHH
T ss_pred             HHHHHHHHhhcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHH
Confidence            3344444433355799999999999888776      3799999998                2577888888653 211


Q ss_pred             -----CCCccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEeec
Q 022592          187 -----SSSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVK  227 (294)
Q Consensus       187 -----~~~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e~~  227 (294)
                           .++||+|++...  ..+...+++++.++|+|||+|++.++.
T Consensus       129 ~~~~~~~~fD~V~~d~~--~~~~~~~l~~~~~~LkpGG~lv~d~~~  172 (242)
T 3r3h_A          129 LNEGGEHQFDFIFIDAD--KTNYLNYYELALKLVTPKGLIAIDNIF  172 (242)
T ss_dssp             HHHHCSSCEEEEEEESC--GGGHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred             hhccCCCCEeEEEEcCC--hHHhHHHHHHHHHhcCCCeEEEEECCc
Confidence                 478999998754  346678999999999999999997654

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=99.25  E-value=2e-11  Score=108.19  Aligned_cols=85  Identities=12%  Similarity=0.154  Sum_probs=67.7

Q ss_pred             CCCCEEEEEcCcccHHHHHhc--cceEEEeccCC----------------CCcEE--EccCCCCCCCCCCccEEEEcccc
Q 022592          140 SPSLVIADFGCGDARLAKSVK--NKVFSFDLVSN----------------DPSVI--ACDMSNTPLNSSSVDVAVFCLSL  199 (294)
Q Consensus       140 ~~~~~VLDiGcG~G~~~~~l~--~~v~gvD~s~~----------------~~~~~--~~d~~~lp~~~~~fD~Vi~~~~l  199 (294)
                      .++.+|||||||+|.++..++  ..|+|+|+++.                ++.++  .+|+..++  +++||+|++..+ 
T Consensus        73 ~~g~~VLDlGcGtG~~s~~la~~~~V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~V~sd~~-  149 (265)
T 2oxt_A           73 ELTGRVVDLGCGRGGWSYYAASRPHVMDVRAYTLGVGGHEVPRITESYGWNIVKFKSRVDIHTLP--VERTDVIMCDVG-  149 (265)
T ss_dssp             CCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC--CCCCSEEEECCC-
T ss_pred             CCCCEEEEeCcCCCHHHHHHHHcCcEEEEECchhhhhhhhhhhhhhccCCCeEEEecccCHhHCC--CCCCcEEEEeCc-
Confidence            367799999999999998887  48999999873                35677  78988876  678999999877 


Q ss_pred             cCC-CH----H---HHHHHHHHhcCcCc--EEEEEeec
Q 022592          200 MGI-NF----P---NYLQEAQRVLKPSG--WLLIAEVK  227 (294)
Q Consensus       200 ~~~-~~----~---~~l~el~r~LkpgG--~l~i~e~~  227 (294)
                      ++. ++    .   .++.++.++|+|||  .|++..+.
T Consensus       150 ~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~  187 (265)
T 2oxt_A          150 ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC  187 (265)
T ss_dssp             CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred             ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence            432 32    1   37899999999999  88886543

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.25  E-value=4.8e-12  Score=104.89  Aligned_cols=99  Identities=12%  Similarity=0.081  Sum_probs=75.1

Q ss_pred             HHHHHHhhccCCCCEEEEEcCcccHHHHHhc----cceEEEeccC----------------CCCcEEEccCCCC----CC
Q 022592          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS----------------NDPSVIACDMSNT----PL  185 (294)
Q Consensus       130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~----------------~~~~~~~~d~~~l----p~  185 (294)
                      +.++..+....++.+|||+|||+|.++..++    .+|+|+|+++                .++.++.+|+.+.    +.
T Consensus        33 ~~~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  112 (187)
T 2fhp_A           33 ESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYE  112 (187)
T ss_dssp             HHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHH
T ss_pred             HHHHHHHHhhcCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHh
Confidence            3345555433356799999999999988665    3799999997                2477888988663    22


Q ss_pred             CCCCccEEEEcccccCCCHHHHHHHH--HHhcCcCcEEEEEeecC
Q 022592          186 NSSSVDVAVFCLSLMGINFPNYLQEA--QRVLKPSGWLLIAEVKS  228 (294)
Q Consensus       186 ~~~~fD~Vi~~~~l~~~~~~~~l~el--~r~LkpgG~l~i~e~~~  228 (294)
                      ++++||+|++...++..+....+..+  .++|+|||.+++.....
T Consensus       113 ~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~  157 (187)
T 2fhp_A          113 EKLQFDLVLLDPPYAKQEIVSQLEKMLERQLLTNEAVIVCETDKT  157 (187)
T ss_dssp             TTCCEEEEEECCCGGGCCHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred             cCCCCCEEEECCCCCchhHHHHHHHHHHhcccCCCCEEEEEeCCc
Confidence            36789999998886656777888888  89999999999875443

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.24  E-value=3.5e-12  Score=105.23  Aligned_cols=99  Identities=9%  Similarity=0.041  Sum_probs=74.7

Q ss_pred             HHHHHHhhccCCCCEEEEEcCcccHHHHHhc----cceEEEeccC----------------CCCcEEEccCCC-CCCCCC
Q 022592          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS----------------NDPSVIACDMSN-TPLNSS  188 (294)
Q Consensus       130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~----------------~~~~~~~~d~~~-lp~~~~  188 (294)
                      +.++..+....++.+|||+|||+|.++..++    ..|+|+|+++                .++.++.+|+.+ ++..++
T Consensus        20 ~~~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~   99 (177)
T 2esr_A           20 GAIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTG   99 (177)
T ss_dssp             HHHHHHHCSCCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCS
T ss_pred             HHHHHHHHhhcCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcC
Confidence            4456666533356799999999999988776    3799999997                246788888876 344456


Q ss_pred             CccEEEEcccccCCCHHHHHHHHH--HhcCcCcEEEEEeecC
Q 022592          189 SVDVAVFCLSLMGINFPNYLQEAQ--RVLKPSGWLLIAEVKS  228 (294)
Q Consensus       189 ~fD~Vi~~~~l~~~~~~~~l~el~--r~LkpgG~l~i~e~~~  228 (294)
                      .||+|++...++......++..+.  ++|+|||.+++.....
T Consensus       100 ~fD~i~~~~~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~  141 (177)
T 2esr_A          100 RFDLVFLDPPYAKETIVATIEALAAKNLLSEQVMVVCETDKT  141 (177)
T ss_dssp             CEEEEEECCSSHHHHHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred             CCCEEEECCCCCcchHHHHHHHHHhCCCcCCCcEEEEEECCc
Confidence            799999987764445567777777  9999999999976443

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.24  E-value=1e-11  Score=112.13  Aligned_cols=127  Identities=17%  Similarity=0.118  Sum_probs=90.3

Q ss_pred             CCCEEEEEcCcccHHHHHhc-----cceEEEeccC-------------------CCCcEEEccCCCCCC--CCCCccEEE
Q 022592          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS-------------------NDPSVIACDMSNTPL--NSSSVDVAV  194 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~-------------------~~~~~~~~d~~~lp~--~~~~fD~Vi  194 (294)
                      .+.+|||||||+|.++..++     ..|+++|+++                   .++.++.+|+...+.  ++++||+|+
T Consensus        95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvIi  174 (304)
T 3bwc_A           95 KPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVVI  174 (304)
T ss_dssp             SCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEEE
T ss_pred             CCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEEE
Confidence            45799999999999998876     3799999985                   256788888876543  468899999


Q ss_pred             EcccccCC-CH----HHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEEecc------CCeE
Q 022592          195 FCLSLMGI-NF----PNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSKDFS------NKMF  263 (294)
Q Consensus       195 ~~~~l~~~-~~----~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~------~~~f  263 (294)
                      +.....+. ..    ..+++++.++|+|||+|++..-...+    .......+.+.++++||..+.....      ...+
T Consensus       175 ~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~----~~~~~~~~~~~l~~~GF~~v~~~~~~vP~yp~g~w  250 (304)
T 3bwc_A          175 IDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESIWL----DLELIEKMSRFIRETGFASVQYALMHVPTYPCGSI  250 (304)
T ss_dssp             EECC---------CCHHHHHHHHHHEEEEEEEEEEECCTTT----CHHHHHHHHHHHHHHTCSEEEEEECCCTTSTTSCC
T ss_pred             ECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCccc----chHHHHHHHHHHHhCCCCcEEEEEeecccccCcce
Confidence            97665542 11    68999999999999999986432211    1124567888999999988764321      2445


Q ss_pred             EEEEEEEC
Q 022592          264 IMFYFKKK  271 (294)
Q Consensus       264 ~~i~~~k~  271 (294)
                      .++++.+.
T Consensus       251 ~f~~as~~  258 (304)
T 3bwc_A          251 GTLVCSKK  258 (304)
T ss_dssp             EEEEEESS
T ss_pred             EEEEEeCC
Confidence            56666654

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.24  E-value=4.3e-12  Score=107.57  Aligned_cols=98  Identities=16%  Similarity=0.118  Sum_probs=73.1

Q ss_pred             HHHHhhccCCCCEEEEEcCcccHHHHHhc----cceEEEeccC-----------------CCCcEEEccCCCCCC--CCC
Q 022592          132 IVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS-----------------NDPSVIACDMSNTPL--NSS  188 (294)
Q Consensus       132 ~~~~l~~~~~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~-----------------~~~~~~~~d~~~lp~--~~~  188 (294)
                      ++..+....++.+|||+|||+|.++..++    ..|+|+|+|+                 .++.++.+|+.++..  +++
T Consensus        44 l~~~l~~~~~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  123 (201)
T 2ift_A           44 LFNWLMPYIHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQ  123 (201)
T ss_dssp             HHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSS
T ss_pred             HHHHHHHhcCCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccC
Confidence            34444332256799999999999988654    3799999996                 156788888876432  367


Q ss_pred             C-ccEEEEcccccCCCHHHHHHHH--HHhcCcCcEEEEEeecCC
Q 022592          189 S-VDVAVFCLSLMGINFPNYLQEA--QRVLKPSGWLLIAEVKSR  229 (294)
Q Consensus       189 ~-fD~Vi~~~~l~~~~~~~~l~el--~r~LkpgG~l~i~e~~~~  229 (294)
                      + ||+|++...++..+...++..+  .++|+|||.+++......
T Consensus       124 ~~fD~I~~~~~~~~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~~  167 (201)
T 2ift_A          124 PHFDVVFLDPPFHFNLAEQAISLLCENNWLKPNALIYVETEKDK  167 (201)
T ss_dssp             CCEEEEEECCCSSSCHHHHHHHHHHHTTCEEEEEEEEEEEESSS
T ss_pred             CCCCEEEECCCCCCccHHHHHHHHHhcCccCCCcEEEEEECCCC
Confidence            8 9999998886545677888888  678999999999765443

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.23  E-value=3e-11  Score=110.14  Aligned_cols=83  Identities=17%  Similarity=0.246  Sum_probs=69.9

Q ss_pred             CCCEEEEEcCcccHHHHHhc----cceEEEeccC---------------CCCcEEEccCCCCCCCCCCccEEEEccccc-
Q 022592          141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLM-  200 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~---------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~-  200 (294)
                      ++.+|||||||+|.++..++    .+|+|+|+++               .++.++.+|+.++++++++||+|++....+ 
T Consensus        38 ~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~~~  117 (328)
T 1g6q_1           38 KDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYF  117 (328)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTCCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBTT
T ss_pred             CCCEEEEecCccHHHHHHHHHCCCCEEEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCchhh
Confidence            56799999999999988776    3799999995               247899999999988888999999875433 


Q ss_pred             --C-CCHHHHHHHHHHhcCcCcEEEE
Q 022592          201 --G-INFPNYLQEAQRVLKPSGWLLI  223 (294)
Q Consensus       201 --~-~~~~~~l~el~r~LkpgG~l~i  223 (294)
                        + ..+..++.++.++|+|||.++.
T Consensus       118 l~~~~~~~~~l~~~~~~LkpgG~li~  143 (328)
T 1g6q_1          118 LLYESMMDTVLYARDHYLVEGGLIFP  143 (328)
T ss_dssp             BSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             cccHHHHHHHHHHHHhhcCCCeEEEE
Confidence              3 3678899999999999999973

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=99.23  E-value=2.2e-11  Score=108.50  Aligned_cols=85  Identities=12%  Similarity=0.124  Sum_probs=67.5

Q ss_pred             CCCCEEEEEcCcccHHHHHhc--cceEEEeccCC----------------CCcEE--EccCCCCCCCCCCccEEEEcccc
Q 022592          140 SPSLVIADFGCGDARLAKSVK--NKVFSFDLVSN----------------DPSVI--ACDMSNTPLNSSSVDVAVFCLSL  199 (294)
Q Consensus       140 ~~~~~VLDiGcG~G~~~~~l~--~~v~gvD~s~~----------------~~~~~--~~d~~~lp~~~~~fD~Vi~~~~l  199 (294)
                      .++.+|||||||+|.++..++  ..|+|+|+++.                ++.++  .+|+..+|  +++||+|++..+ 
T Consensus        81 ~~g~~VLDlGcGtG~~s~~la~~~~V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~Vvsd~~-  157 (276)
T 2wa2_A           81 ELKGTVVDLGCGRGSWSYYAASQPNVREVKAYTLGTSGHEKPRLVETFGWNLITFKSKVDVTKME--PFQADTVLCDIG-  157 (276)
T ss_dssp             CCCEEEEEESCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC--CCCCSEEEECCC-
T ss_pred             CCCCEEEEeccCCCHHHHHHHHcCCEEEEECchhhhhhhhchhhhhhcCCCeEEEeccCcHhhCC--CCCcCEEEECCC-
Confidence            366799999999999998887  48999999872                45677  78888866  678999999877 


Q ss_pred             cCC-CH----H---HHHHHHHHhcCcCc--EEEEEeec
Q 022592          200 MGI-NF----P---NYLQEAQRVLKPSG--WLLIAEVK  227 (294)
Q Consensus       200 ~~~-~~----~---~~l~el~r~LkpgG--~l~i~e~~  227 (294)
                      ++. ++    .   .++.++.++|+|||  .|++..+.
T Consensus       158 ~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~  195 (276)
T 2wa2_A          158 ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN  195 (276)
T ss_dssp             CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred             cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC
Confidence            432 22    1   37899999999999  98885543

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.23  E-value=3.2e-11  Score=110.92  Aligned_cols=91  Identities=21%  Similarity=0.318  Sum_probs=73.9

Q ss_pred             HHHHhhccCCCCEEEEEcCcccHHHHHhc----cceEEEeccC---------------CCCcEEEccCCCCCCCCCCccE
Q 022592          132 IVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVDV  192 (294)
Q Consensus       132 ~~~~l~~~~~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~---------------~~~~~~~~d~~~lp~~~~~fD~  192 (294)
                      ++..+... ++.+|||||||+|.++..++    .+|+|+|+|+               .++.++.+|+.+++++ ++||+
T Consensus        42 i~~~l~~~-~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~-~~~D~  119 (348)
T 2y1w_A           42 ILQNHTDF-KDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP-EQVDI  119 (348)
T ss_dssp             HHHTGGGT-TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEE
T ss_pred             HHhccccC-CcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchhhCCCC-CceeE
Confidence            44444333 66799999999999988876    3899999996               3578999999988775 67999


Q ss_pred             EEEcccccCC---CHHHHHHHHHHhcCcCcEEEEE
Q 022592          193 AVFCLSLMGI---NFPNYLQEAQRVLKPSGWLLIA  224 (294)
Q Consensus       193 Vi~~~~l~~~---~~~~~l~el~r~LkpgG~l~i~  224 (294)
                      |++...++|.   +....+.++.++|+|||.+++.
T Consensus       120 Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~  154 (348)
T 2y1w_A          120 IISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT  154 (348)
T ss_dssp             EEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESC
T ss_pred             EEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEe
Confidence            9999887763   4568888999999999999853

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.23  E-value=3.2e-13  Score=117.20  Aligned_cols=132  Identities=16%  Similarity=0.185  Sum_probs=94.3

Q ss_pred             HHHHHHhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccC----------------CCCcEEEccCCCCCCCCCCc
Q 022592          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSV  190 (294)
Q Consensus       130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~----------------~~~~~~~~d~~~lp~~~~~f  190 (294)
                      ..++..+....++.+|||+|||+|.++..++   ..|+|+|+|+                .++.++.+|+..++ ++++|
T Consensus        67 ~~l~~~~~~~~~~~~vLD~gcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~  145 (241)
T 3gdh_A           67 EHIAGRVSQSFKCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA-SFLKA  145 (241)
T ss_dssp             HHHHHHHHHHSCCSEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG-GGCCC
T ss_pred             HHHHHHhhhccCCCEEEECccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc-ccCCC
Confidence            3344444443367799999999999999887   4899999997                25789999998876 56789


Q ss_pred             cEEEEcccccCC-CHHHHHHHHHHhcCcCcEEEEEeecCCCCCC-----CCCCCHHHHHHHHHHCCCeEEEEeccCCeE
Q 022592          191 DVAVFCLSLMGI-NFPNYLQEAQRVLKPSGWLLIAEVKSRFDPN-----TGGADPNKFSKAVCDLGFAPVSKDFSNKMF  263 (294)
Q Consensus       191 D~Vi~~~~l~~~-~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~-----~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~f  263 (294)
                      |+|++..++++. +....+.++.++|+|||.+++.... .....     ....+.+.+..++...|.-.+.....+...
T Consensus       146 D~v~~~~~~~~~~~~~~~~~~~~~~L~pgG~~i~~~~~-~~~~~~~~~lp~~~~~~~~~~~l~~~g~~~i~~~~~~~~~  223 (241)
T 3gdh_A          146 DVVFLSPPWGGPDYATAETFDIRTMMSPDGFEIFRLSK-KITNNIVYFLPRNADIDQVASLAGPGGQVEIEQNFLNNKL  223 (241)
T ss_dssp             SEEEECCCCSSGGGGGSSSBCTTTSCSSCHHHHHHHHH-HHCSCEEEEEETTBCHHHHHHTTCTTCCEEEEEEEETTEE
T ss_pred             CEEEECCCcCCcchhhhHHHHHHhhcCCcceeHHHHHH-hhCCceEEECCCCCCHHHHHHHhccCCCEEEEehhhcCcc
Confidence            999999999985 4445778899999999996663211 11000     112467888888888886665544444444

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=99.23  E-value=2.9e-11  Score=107.18  Aligned_cols=124  Identities=15%  Similarity=0.147  Sum_probs=88.0

Q ss_pred             HHHHHHhhccCCCCEEEEEcCccc---HHHHH---hc--cceEEEeccC---------------CCCcEEEccCCCCC--
Q 022592          130 NIIVKWLKDHSPSLVIADFGCGDA---RLAKS---VK--NKVFSFDLVS---------------NDPSVIACDMSNTP--  184 (294)
Q Consensus       130 ~~~~~~l~~~~~~~~VLDiGcG~G---~~~~~---l~--~~v~gvD~s~---------------~~~~~~~~d~~~lp--  184 (294)
                      .+++.++........|||||||++   .....   +.  .+|+++|.|+               .++.|+.+|+.+++  
T Consensus        67 ~rav~~l~~~~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~  146 (277)
T 3giw_A           67 NRAVAHLAKEAGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASI  146 (277)
T ss_dssp             HHHHHHHHHTSCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHH
T ss_pred             HHHHHHhccccCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhh
Confidence            446666664323358999999973   23222   22  4899999997               14789999998752  


Q ss_pred             ----CCCCCcc-----EEEEcccccCC-C---HHHHHHHHHHhcCcCcEEEEEeecCCCCC---------------CCCC
Q 022592          185 ----LNSSSVD-----VAVFCLSLMGI-N---FPNYLQEAQRVLKPSGWLLIAEVKSRFDP---------------NTGG  236 (294)
Q Consensus       185 ----~~~~~fD-----~Vi~~~~l~~~-~---~~~~l~el~r~LkpgG~l~i~e~~~~~~~---------------~~~~  236 (294)
                          ...+.||     .|+++.+|||. +   +..+++++.+.|+|||+|+++++...+.+               ....
T Consensus       147 l~~~~~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d~~p~~~~~~~~~~~~~g~p~~~  226 (277)
T 3giw_A          147 LDAPELRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAEFAPQEVGRVAREYAARNMPMRL  226 (277)
T ss_dssp             HTCHHHHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCTTSHHHHHHHHHHHHHTTCCCCC
T ss_pred             hcccccccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCCCCHHHHHHHHHHHHhcCCCCcc
Confidence                1134566     58899999995 3   57899999999999999999976654321               1123


Q ss_pred             CCHHHHHHHHHHCCCeEEE
Q 022592          237 ADPNKFSKAVCDLGFAPVS  255 (294)
Q Consensus       237 ~~~~~~~~~l~~~Gf~~~~  255 (294)
                      .+.+++..+|.  ||++++
T Consensus       227 rs~~ei~~~f~--Glelve  243 (277)
T 3giw_A          227 RTHAEAEEFFE--GLELVE  243 (277)
T ss_dssp             CCHHHHHHTTT--TSEECT
T ss_pred             CCHHHHHHHhC--CCcccC
Confidence            58899999885  998765

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.23  E-value=2.2e-11  Score=104.73  Aligned_cols=91  Identities=15%  Similarity=0.142  Sum_probs=72.8

Q ss_pred             HHHHHHhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccCC-------------CCcEEEccCCCCCCCCCCccEE
Q 022592          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVSN-------------DPSVIACDMSNTPLNSSSVDVA  193 (294)
Q Consensus       130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~~-------------~~~~~~~d~~~lp~~~~~fD~V  193 (294)
                      ..++..+... ++.+|||||||+|.++..++   ..|+|+|+++.             ++.++.+|+......+++||+|
T Consensus        60 ~~~~~~~~~~-~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v  138 (231)
T 1vbf_A           60 IFMLDELDLH-KGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDRV  138 (231)
T ss_dssp             HHHHHHTTCC-TTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEEE
T ss_pred             HHHHHhcCCC-CCCEEEEEcCCCCHHHHHHHHHcCEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCCccEE
Confidence            4455555433 67799999999999988886   48999999871             6788999987733346789999


Q ss_pred             EEcccccCCCHHHHHHHHHHhcCcCcEEEEEee
Q 022592          194 VFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEV  226 (294)
Q Consensus       194 i~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e~  226 (294)
                      ++..+++|..     .++.++|+|||.+++...
T Consensus       139 ~~~~~~~~~~-----~~~~~~L~pgG~l~~~~~  166 (231)
T 1vbf_A          139 VVWATAPTLL-----CKPYEQLKEGGIMILPIG  166 (231)
T ss_dssp             EESSBBSSCC-----HHHHHTEEEEEEEEEEEC
T ss_pred             EECCcHHHHH-----HHHHHHcCCCcEEEEEEc
Confidence            9999998864     368999999999999753

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.23  E-value=7.9e-12  Score=106.00  Aligned_cols=88  Identities=6%  Similarity=0.016  Sum_probs=70.5

Q ss_pred             CCCEEEEEcCcccHHHHHhc----cceEEEeccC---------------CCCcEEEccCCC-CCCCCCCccEEEEccccc
Q 022592          141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVS---------------NDPSVIACDMSN-TPLNSSSVDVAVFCLSLM  200 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~---------------~~~~~~~~d~~~-lp~~~~~fD~Vi~~~~l~  200 (294)
                      ++.+|||+|||+|.++..++    ..|+|+|+|+               .++.++.+|+.. ++...++||+|++...++
T Consensus        54 ~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~~  133 (202)
T 2fpo_A           54 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPFR  133 (202)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSSS
T ss_pred             CCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCCC
Confidence            45799999999999988654    3799999997               257888999876 555667899999988755


Q ss_pred             CCCHHHHHHHHHH--hcCcCcEEEEEeecC
Q 022592          201 GINFPNYLQEAQR--VLKPSGWLLIAEVKS  228 (294)
Q Consensus       201 ~~~~~~~l~el~r--~LkpgG~l~i~e~~~  228 (294)
                      ......++..+.+  +|+|||.+++.....
T Consensus       134 ~~~~~~~l~~l~~~~~L~pgG~l~i~~~~~  163 (202)
T 2fpo_A          134 RGLLEETINLLEDNGWLADEALIYVESEVE  163 (202)
T ss_dssp             TTTHHHHHHHHHHTTCEEEEEEEEEEEEGG
T ss_pred             CCcHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence            4577788888866  599999999876443

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.22  E-value=5.1e-11  Score=110.47  Aligned_cols=82  Identities=21%  Similarity=0.287  Sum_probs=67.6

Q ss_pred             CCCEEEEEcCcccHHHHHhc----cceEEEeccC---------------CCCcEEEccCCCCCCCCCCccEEEEc---cc
Q 022592          141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVDVAVFC---LS  198 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~---------------~~~~~~~~d~~~lp~~~~~fD~Vi~~---~~  198 (294)
                      ++.+|||||||+|.++..++    .+|+|||.|+               +.+.++.+|++++.++ ++||+||+-   ..
T Consensus        83 ~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lp-e~~DvivsE~~~~~  161 (376)
T 4hc4_A           83 RGKTVLDVGAGTGILSIFCAQAGARRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVELP-EQVDAIVSEWMGYG  161 (376)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEECCCCBTT
T ss_pred             CCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChHHHHHHHHHHHHcCCCceEEEEeeeeeeecCC-ccccEEEeeccccc
Confidence            56799999999999987765    3799999986               3578999999998876 679999983   33


Q ss_pred             ccCC-CHHHHHHHHHHhcCcCcEEEE
Q 022592          199 LMGI-NFPNYLQEAQRVLKPSGWLLI  223 (294)
Q Consensus       199 l~~~-~~~~~l~el~r~LkpgG~l~i  223 (294)
                      |.+. ....++....++|+|||.++-
T Consensus       162 l~~e~~l~~~l~a~~r~Lkp~G~~iP  187 (376)
T 4hc4_A          162 LLHESMLSSVLHARTKWLKEGGLLLP  187 (376)
T ss_dssp             BTTTCSHHHHHHHHHHHEEEEEEEES
T ss_pred             ccccchhhhHHHHHHhhCCCCceECC
Confidence            4443 678899999999999998875

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.21  E-value=2.6e-11  Score=109.94  Aligned_cols=91  Identities=14%  Similarity=0.214  Sum_probs=73.7

Q ss_pred             HHHHHHHhhccCCCCEEEEEcCcccHHHHHhc---cc---eEEEeccC---------------CCCcEEEccCCCCCCCC
Q 022592          129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NK---VFSFDLVS---------------NDPSVIACDMSNTPLNS  187 (294)
Q Consensus       129 ~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~---v~gvD~s~---------------~~~~~~~~d~~~lp~~~  187 (294)
                      ...++..+... ++.+|||||||+|.++..++   ..   |+|+|+|+               .++.+..+|+...+.++
T Consensus        64 ~~~l~~~l~~~-~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~  142 (317)
T 1dl5_A           64 MALFMEWVGLD-KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEF  142 (317)
T ss_dssp             HHHHHHHTTCC-TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGG
T ss_pred             HHHHHHhcCCC-CcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccccC
Confidence            34456655544 67899999999999988876   24   99999997               24788899998765556


Q ss_pred             CCccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEe
Q 022592          188 SSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAE  225 (294)
Q Consensus       188 ~~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e  225 (294)
                      ++||+|++..+++|..     .++.++|+|||.+++..
T Consensus       143 ~~fD~Iv~~~~~~~~~-----~~~~~~LkpgG~lvi~~  175 (317)
T 1dl5_A          143 SPYDVIFVTVGVDEVP-----ETWFTQLKEGGRVIVPI  175 (317)
T ss_dssp             CCEEEEEECSBBSCCC-----HHHHHHEEEEEEEEEEB
T ss_pred             CCeEEEEEcCCHHHHH-----HHHHHhcCCCcEEEEEE
Confidence            8899999999999865     57889999999999964

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.20  E-value=3.7e-11  Score=103.95  Aligned_cols=84  Identities=13%  Similarity=0.143  Sum_probs=68.7

Q ss_pred             CCCEEEEEcCcccHHHHHhc-----cceEEEeccC----------------CCCcEEEccCCCC-C-CCCCCccEEEEcc
Q 022592          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS----------------NDPSVIACDMSNT-P-LNSSSVDVAVFCL  197 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~----------------~~~~~~~~d~~~l-p-~~~~~fD~Vi~~~  197 (294)
                      ++.+|||||||+|..+..++     ..|+++|+++                +++.++.+|+... + ..+++||+|++..
T Consensus        71 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~~  150 (232)
T 3ntv_A           71 NVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFIDA  150 (232)
T ss_dssp             TCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEET
T ss_pred             CCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEcC
Confidence            56799999999999988886     3799999987                2688999999764 3 3368899999764


Q ss_pred             cccCCCHHHHHHHHHHhcCcCcEEEEEee
Q 022592          198 SLMGINFPNYLQEAQRVLKPSGWLLIAEV  226 (294)
Q Consensus       198 ~l~~~~~~~~l~el~r~LkpgG~l~i~e~  226 (294)
                      .  ..+...++.++.++|+|||+|++.++
T Consensus       151 ~--~~~~~~~l~~~~~~LkpgG~lv~d~~  177 (232)
T 3ntv_A          151 A--KAQSKKFFEIYTPLLKHQGLVITDNV  177 (232)
T ss_dssp             T--SSSHHHHHHHHGGGEEEEEEEEEECT
T ss_pred             c--HHHHHHHHHHHHHhcCCCeEEEEeeC
Confidence            3  24678899999999999999988653

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.19  E-value=1.5e-10  Score=103.22  Aligned_cols=115  Identities=16%  Similarity=0.200  Sum_probs=80.4

Q ss_pred             CCCEEEEEcCcccHHHHHhc----cceEEEec-cCC-------------------------CCcEEEccCCCCC--C---
Q 022592          141 PSLVIADFGCGDARLAKSVK----NKVFSFDL-VSN-------------------------DPSVIACDMSNTP--L---  185 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~----~~v~gvD~-s~~-------------------------~~~~~~~d~~~lp--~---  185 (294)
                      ++.+|||||||+|.++..++    ..|+|+|+ ++.                         ++.+...|..+..  +   
T Consensus        79 ~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  158 (281)
T 3bzb_A           79 AGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQRC  158 (281)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHHH
T ss_pred             CCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHhh
Confidence            56799999999999988776    27999999 551                         2444444433211  1   


Q ss_pred             -CCCCccEEEEcccccCC-CHHHHHHHHHHhcC---c--CcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCC-CeEEEEe
Q 022592          186 -NSSSVDVAVFCLSLMGI-NFPNYLQEAQRVLK---P--SGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLG-FAPVSKD  257 (294)
Q Consensus       186 -~~~~fD~Vi~~~~l~~~-~~~~~l~el~r~Lk---p--gG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~G-f~~~~~~  257 (294)
                       ++++||+|+++.+++|. +...++..+.++|+   |  ||.++++-....  +.. ......+...+++.| |.+..+.
T Consensus       159 ~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~~~--~~~-~~~~~~~~~~l~~~G~f~v~~~~  235 (281)
T 3bzb_A          159 TGLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVALVTFTHHR--PHL-AERDLAFFRLVNADGALIAEPWL  235 (281)
T ss_dssp             HSCSSBSEEEEESCCSCGGGHHHHHHHHHHHBCCTTTCTTCEEEEEECC-----------CTHHHHHHHHSTTEEEEEEE
T ss_pred             ccCCCCCEEEEeCcccChHHHHHHHHHHHHHhcccCCCCCCEEEEEEEeee--ccc-chhHHHHHHHHHhcCCEEEEEec
Confidence             35789999999999884 78899999999999   9  998877521111  000 012356777899999 9988764


Q ss_pred             c
Q 022592          258 F  258 (294)
Q Consensus       258 ~  258 (294)
                      .
T Consensus       236 ~  236 (281)
T 3bzb_A          236 S  236 (281)
T ss_dssp             C
T ss_pred             c
Confidence            3

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.19  E-value=6.1e-11  Score=107.59  Aligned_cols=120  Identities=13%  Similarity=0.132  Sum_probs=85.6

Q ss_pred             HHHHhhccCCCCEEEEEcCcccHHHHHhc------cceEEEeccC---------------CCCcEEEccCCCCCCCCCCc
Q 022592          132 IVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSV  190 (294)
Q Consensus       132 ~~~~l~~~~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~---------------~~~~~~~~d~~~lp~~~~~f  190 (294)
                      ++..+....++.+|||+|||+|..+..++      ..|+|+|+++               .++.++.+|+..++..+++|
T Consensus       109 l~~~~l~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~f  188 (315)
T 1ixk_A          109 YPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEF  188 (315)
T ss_dssp             HHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCE
T ss_pred             HHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccC
Confidence            33333333477899999999999888776      3699999997               26788889998876556789


Q ss_pred             cEEEEccc------ccC-CC----------------HHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHH
Q 022592          191 DVAVFCLS------LMG-IN----------------FPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVC  247 (294)
Q Consensus       191 D~Vi~~~~------l~~-~~----------------~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~  247 (294)
                      |+|++...      +.+ .+                ...++.++.++|+|||.|+++...-...     -+...+..+++
T Consensus       189 D~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~~-----Ene~~v~~~l~  263 (315)
T 1ixk_A          189 DKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPE-----ENEFVIQWALD  263 (315)
T ss_dssp             EEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGG-----GTHHHHHHHHH
T ss_pred             CEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCChH-----HhHHHHHHHHh
Confidence            99998432      221 11                1488999999999999999976432111     13456778889


Q ss_pred             HCCCeEEEE
Q 022592          248 DLGFAPVSK  256 (294)
Q Consensus       248 ~~Gf~~~~~  256 (294)
                      +.||+++..
T Consensus       264 ~~~~~~~~~  272 (315)
T 1ixk_A          264 NFDVELLPL  272 (315)
T ss_dssp             HSSEEEECC
T ss_pred             cCCCEEecC
Confidence            999877653

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.18  E-value=6.8e-11  Score=101.99  Aligned_cols=84  Identities=13%  Similarity=0.144  Sum_probs=68.9

Q ss_pred             CCCEEEEEcCcccHHHHHhc-----cceEEEeccC----------------CCCcEEEccCCCC-CCC--CCCccEEEEc
Q 022592          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS----------------NDPSVIACDMSNT-PLN--SSSVDVAVFC  196 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~----------------~~~~~~~~d~~~l-p~~--~~~fD~Vi~~  196 (294)
                      ++.+|||||||+|.++..++     ..|+++|+++                .++.++.+|+... +..  +++||+|++.
T Consensus        54 ~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~  133 (233)
T 2gpy_A           54 APARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFID  133 (233)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEEE
T ss_pred             CCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEEC
Confidence            66799999999999888776     3799999986                2477888888763 432  5789999987


Q ss_pred             ccccCCCHHHHHHHHHHhcCcCcEEEEEee
Q 022592          197 LSLMGINFPNYLQEAQRVLKPSGWLLIAEV  226 (294)
Q Consensus       197 ~~l~~~~~~~~l~el~r~LkpgG~l~i~e~  226 (294)
                      ....  +...++..+.++|+|||.+++.++
T Consensus       134 ~~~~--~~~~~l~~~~~~L~pgG~lv~~~~  161 (233)
T 2gpy_A          134 AAKG--QYRRFFDMYSPMVRPGGLILSDNV  161 (233)
T ss_dssp             GGGS--CHHHHHHHHGGGEEEEEEEEEETT
T ss_pred             CCHH--HHHHHHHHHHHHcCCCeEEEEEcC
Confidence            7643  778999999999999999999754

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.18  E-value=1.7e-10  Score=106.12  Aligned_cols=119  Identities=19%  Similarity=0.214  Sum_probs=88.3

Q ss_pred             CCCCEEEEEcCcccHHHHHhc------cceEEEeccC---------------CCCcEEEccCCCCCCCCCCccEEEEccc
Q 022592          140 SPSLVIADFGCGDARLAKSVK------NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVDVAVFCLS  198 (294)
Q Consensus       140 ~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~---------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~  198 (294)
                      .++..|||+|||+|.++..++      ..++|+|+++               .++.+.++|+.+++.+...||+|+++..
T Consensus       202 ~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~~~~~D~Ii~npP  281 (354)
T 3tma_A          202 RPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRFFPEVDRILANPP  281 (354)
T ss_dssp             CTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGTCCCCSEEEECCC
T ss_pred             CCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCccccCCCCEEEECCC
Confidence            366799999999999887665      3799999997               2688999999998877788999999776


Q ss_pred             ccCC--C-------HHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEEec---cCCeEEEE
Q 022592          199 LMGI--N-------FPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSKDF---SNKMFIMF  266 (294)
Q Consensus       199 l~~~--~-------~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~---~~~~f~~i  266 (294)
                      +...  +       ...++.++.++|+|||.+++...           +...+..+++ .||+......   ......++
T Consensus       282 yg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~-----------~~~~~~~~~~-~g~~~~~~~~l~~g~l~~~i~  349 (354)
T 3tma_A          282 HGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTL-----------RPALLKRALP-PGFALRHARVVEQGGVYPRVF  349 (354)
T ss_dssp             SCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEES-----------CHHHHHHHCC-TTEEEEEEEECCBTTBCCEEE
T ss_pred             CcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeC-----------CHHHHHHHhh-cCcEEEEEEEEEeCCEEEEEE
Confidence            5431  1       36789999999999999999753           2344555556 8998876332   22233455


Q ss_pred             EEEE
Q 022592          267 YFKK  270 (294)
Q Consensus       267 ~~~k  270 (294)
                      +++|
T Consensus       350 vl~r  353 (354)
T 3tma_A          350 VLEK  353 (354)
T ss_dssp             EEEE
T ss_pred             EEEc
Confidence            5554

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.18  E-value=6.8e-11  Score=101.33  Aligned_cols=116  Identities=11%  Similarity=0.114  Sum_probs=80.6

Q ss_pred             HHHHHhhccCCCCEEEEEcCcccHHHHHhcc------ceEEEeccC----------------CCCcEEEccCCC-CCCCC
Q 022592          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVKN------KVFSFDLVS----------------NDPSVIACDMSN-TPLNS  187 (294)
Q Consensus       131 ~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~~------~v~gvD~s~----------------~~~~~~~~d~~~-lp~~~  187 (294)
                      .++..+....++.+|||||||+|..+..++.      +|+++|+++                +++.++.+|+.. ++...
T Consensus        48 ~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~  127 (221)
T 3u81_A           48 QIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLK  127 (221)
T ss_dssp             HHHHHHHHHHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTT
T ss_pred             HHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHH
Confidence            3444443333567999999999999887762      799999997                247889998754 33222


Q ss_pred             -----CCccEEEEcccccCC-CHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHC-CCeEEE
Q 022592          188 -----SSVDVAVFCLSLMGI-NFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDL-GFAPVS  255 (294)
Q Consensus       188 -----~~fD~Vi~~~~l~~~-~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~-Gf~~~~  255 (294)
                           ++||+|++....++. +...++..+ ++|+|||.|++.++...        ....+.+.+.+. +|....
T Consensus       128 ~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~-~~LkpgG~lv~~~~~~~--------~~~~~~~~l~~~~~~~~~~  193 (221)
T 3u81_A          128 KKYDVDTLDMVFLDHWKDRYLPDTLLLEKC-GLLRKGTVLLADNVIVP--------GTPDFLAYVRGSSSFECTH  193 (221)
T ss_dssp             TTSCCCCCSEEEECSCGGGHHHHHHHHHHT-TCCCTTCEEEESCCCCC--------CCHHHHHHHHHCTTEEEEE
T ss_pred             HhcCCCceEEEEEcCCcccchHHHHHHHhc-cccCCCeEEEEeCCCCc--------chHHHHHHHhhCCCceEEE
Confidence                 689999998877664 455677777 99999999998654421        125666666655 455444

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.18  E-value=4e-11  Score=106.42  Aligned_cols=113  Identities=19%  Similarity=0.257  Sum_probs=85.7

Q ss_pred             HHHHHHhhccCCCCEEEEEcCcccHHHHHhc------cceEEEeccC----------------CCCcEEEccCCCCCCCC
Q 022592          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----------------NDPSVIACDMSNTPLNS  187 (294)
Q Consensus       130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~----------------~~~~~~~~d~~~lp~~~  187 (294)
                      ..++..+... ++.+|||+|||+|.++..++      ..|+++|+++                .++.+..+|+... +++
T Consensus       102 ~~i~~~~~~~-~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~  179 (277)
T 1o54_A          102 SFIAMMLDVK-EGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG-FDE  179 (277)
T ss_dssp             HHHHHHTTCC-TTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC-CSC
T ss_pred             HHHHHHhCCC-CCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc-ccC
Confidence            3455555433 67799999999999887765      3799999987                2467888888775 566


Q ss_pred             CCccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEE
Q 022592          188 SSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSK  256 (294)
Q Consensus       188 ~~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~  256 (294)
                      ++||+|++..    .++..++.++.++|+|||.+++.....        .....+...|++.||..+..
T Consensus       180 ~~~D~V~~~~----~~~~~~l~~~~~~L~pgG~l~~~~~~~--------~~~~~~~~~l~~~gf~~~~~  236 (277)
T 1o54_A          180 KDVDALFLDV----PDPWNYIDKCWEALKGGGRFATVCPTT--------NQVQETLKKLQELPFIRIEV  236 (277)
T ss_dssp             CSEEEEEECC----SCGGGTHHHHHHHEEEEEEEEEEESSH--------HHHHHHHHHHHHSSEEEEEE
T ss_pred             CccCEEEECC----cCHHHHHHHHHHHcCCCCEEEEEeCCH--------HHHHHHHHHHHHCCCceeEE
Confidence            7899999842    466789999999999999999976321        02356778888999987763

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.17  E-value=6.1e-11  Score=100.80  Aligned_cols=90  Identities=20%  Similarity=0.176  Sum_probs=70.3

Q ss_pred             HHHHHHhhccCCCCEEEEEcCcccHHHHHhc------cceEEEeccC---------------CCCcEEEccCCCCCCCCC
Q 022592          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS---------------NDPSVIACDMSNTPLNSS  188 (294)
Q Consensus       130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~---------------~~~~~~~~d~~~lp~~~~  188 (294)
                      ..++..+.. .++.+|||||||+|.++..++      ..|+++|+++               .++.+..+|+......++
T Consensus        67 ~~~~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~  145 (215)
T 2yxe_A           67 GMMCELLDL-KPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPLA  145 (215)
T ss_dssp             HHHHHHTTC-CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGGC
T ss_pred             HHHHHhhCC-CCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCCC
Confidence            345555543 367799999999999887775      3799999986               357788888854332367


Q ss_pred             CccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEe
Q 022592          189 SVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAE  225 (294)
Q Consensus       189 ~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e  225 (294)
                      +||+|++..+++|..     .++.++|+|||.+++..
T Consensus       146 ~fD~v~~~~~~~~~~-----~~~~~~L~pgG~lv~~~  177 (215)
T 2yxe_A          146 PYDRIYTTAAGPKIP-----EPLIRQLKDGGKLLMPV  177 (215)
T ss_dssp             CEEEEEESSBBSSCC-----HHHHHTEEEEEEEEEEE
T ss_pred             CeeEEEECCchHHHH-----HHHHHHcCCCcEEEEEE
Confidence            899999999999865     48899999999999975

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=99.16  E-value=1.6e-10  Score=103.51  Aligned_cols=109  Identities=11%  Similarity=0.081  Sum_probs=80.7

Q ss_pred             CCCCEEEEEcCc------ccH-HHHHh-c--cceEEEeccC--CCCcE-EEccCCCCCCCCCCccEEEEcccccC-----
Q 022592          140 SPSLVIADFGCG------DAR-LAKSV-K--NKVFSFDLVS--NDPSV-IACDMSNTPLNSSSVDVAVFCLSLMG-----  201 (294)
Q Consensus       140 ~~~~~VLDiGcG------~G~-~~~~l-~--~~v~gvD~s~--~~~~~-~~~d~~~lp~~~~~fD~Vi~~~~l~~-----  201 (294)
                      .++.+|||||||      +|. .+..+ .  ..|+|+|+|+  .++.+ +.+|+..++++ ++||+|++....++     
T Consensus        62 ~~g~~VLDLGcGsg~~~GpGs~~~a~~~~~~~~V~gvDis~~v~~v~~~i~gD~~~~~~~-~~fD~Vvsn~~~~~~g~~~  140 (290)
T 2xyq_A           62 PYNMRVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLNDFVSDADSTLIGDCATVHTA-NKWDLIISDMYDPRTKHVT  140 (290)
T ss_dssp             CTTCEEEEESCCCTTSBCHHHHHHHHHSCTTCEEEEEESSCCBCSSSEEEESCGGGCCCS-SCEEEEEECCCCCC---CC
T ss_pred             CCCCEEEEeCCCCCCCCCcHHHHHHHHcCCCCEEEEEECCCCCCCCEEEEECccccCCcc-CcccEEEEcCCcccccccc
Confidence            467799999994      465 12222 1  4799999998  46789 99999988764 67999999754321     


Q ss_pred             ------C-CHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEEe
Q 022592          202 ------I-NFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSKD  257 (294)
Q Consensus       202 ------~-~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~  257 (294)
                            . ....+++++.++|||||.|++..+...        ...++..++++.||..+...
T Consensus       141 ~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~--------~~~~l~~~l~~~GF~~v~~~  195 (290)
T 2xyq_A          141 KENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHS--------WNADLYKLMGHFSWWTAFVT  195 (290)
T ss_dssp             SCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSS--------CCHHHHHHHTTEEEEEEEEE
T ss_pred             ccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccC--------CHHHHHHHHHHcCCcEEEEE
Confidence                  0 134789999999999999999765432        22688899999999877653

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.16  E-value=2e-10  Score=104.83  Aligned_cols=91  Identities=20%  Similarity=0.263  Sum_probs=67.6

Q ss_pred             HHHHHHhhccCCCCEEEEEcCcccHHHHHhc------cceEEEeccC--------------------------CCCcEEE
Q 022592          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS--------------------------NDPSVIA  177 (294)
Q Consensus       130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~--------------------------~~~~~~~  177 (294)
                      ..++..+... ++.+|||+|||+|.++..++      ..|+|+|+++                          .++.+..
T Consensus        95 ~~~l~~l~~~-~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~  173 (336)
T 2b25_A           95 NMILSMMDIN-PGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIH  173 (336)
T ss_dssp             HHHHHHHTCC-TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEE
T ss_pred             HHHHHhcCCC-CCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEE
Confidence            4456665443 67899999999999887765      3799999986                          2578889


Q ss_pred             ccCCCC--CCCCCCccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEe
Q 022592          178 CDMSNT--PLNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAE  225 (294)
Q Consensus       178 ~d~~~l--p~~~~~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e  225 (294)
                      +|+...  ++++++||+|++...    ++..++.++.++|+|||.|++..
T Consensus       174 ~d~~~~~~~~~~~~fD~V~~~~~----~~~~~l~~~~~~LkpgG~lv~~~  219 (336)
T 2b25_A          174 KDISGATEDIKSLTFDAVALDML----NPHVTLPVFYPHLKHGGVCAVYV  219 (336)
T ss_dssp             SCTTCCC-------EEEEEECSS----STTTTHHHHGGGEEEEEEEEEEE
T ss_pred             CChHHcccccCCCCeeEEEECCC----CHHHHHHHHHHhcCCCcEEEEEe
Confidence            999876  566778999998533    34458999999999999999864

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.16  E-value=4.2e-10  Score=96.20  Aligned_cols=97  Identities=12%  Similarity=0.123  Sum_probs=71.9

Q ss_pred             HHHHHHHhhccCCCCEEEEEcCcccHHHHHhc------cceEEEeccC----------------CCCcEEEccCCCC-C-
Q 022592          129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----------------NDPSVIACDMSNT-P-  184 (294)
Q Consensus       129 ~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~----------------~~~~~~~~d~~~l-p-  184 (294)
                      ...++..+....++.+|||||||+|..+..++      .+|+++|+++                +++.++.+|+... + 
T Consensus        46 ~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~  125 (223)
T 3duw_A           46 QGKFLQLLVQIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQ  125 (223)
T ss_dssp             HHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHH
T ss_pred             HHHHHHHHHHhhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHH
Confidence            34455555433366799999999999988776      2799999987                2478888888653 1 


Q ss_pred             CC---CCCccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEeec
Q 022592          185 LN---SSSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVK  227 (294)
Q Consensus       185 ~~---~~~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e~~  227 (294)
                      ++   .++||+|++...  ......++.++.++|+|||.+++.++.
T Consensus       126 ~~~~~~~~fD~v~~d~~--~~~~~~~l~~~~~~L~pgG~lv~~~~~  169 (223)
T 3duw_A          126 IENEKYEPFDFIFIDAD--KQNNPAYFEWALKLSRPGTVIIGDNVV  169 (223)
T ss_dssp             HHHTTCCCCSEEEECSC--GGGHHHHHHHHHHTCCTTCEEEEESCS
T ss_pred             HHhcCCCCcCEEEEcCC--cHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence            11   257999998655  235678999999999999988886543

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.16  E-value=2e-11  Score=106.70  Aligned_cols=115  Identities=9%  Similarity=0.018  Sum_probs=74.8

Q ss_pred             CCCEEEEEcCcccHHHHHhc-----cceEEEeccC----------------CCCcEEEccCCCC---CCC---CCCccEE
Q 022592          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS----------------NDPSVIACDMSNT---PLN---SSSVDVA  193 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~----------------~~~~~~~~d~~~l---p~~---~~~fD~V  193 (294)
                      ++.+|||+|||+|.++..++     ..|+|+|+++                .++.++.+|+.+.   +++   +++||+|
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i  144 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC  144 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence            45699999999999887665     3799999997                2378999997652   444   2689999


Q ss_pred             EEcccccCCC----------------HHHHHHHHHHhcCcCcEEEEEeec-----------CCCCCC-CCCCCHHHHHHH
Q 022592          194 VFCLSLMGIN----------------FPNYLQEAQRVLKPSGWLLIAEVK-----------SRFDPN-TGGADPNKFSKA  245 (294)
Q Consensus       194 i~~~~l~~~~----------------~~~~l~el~r~LkpgG~l~i~e~~-----------~~~~~~-~~~~~~~~~~~~  245 (294)
                      +++..+++..                ...++.+++++|+|||.+.+++..           ...... ......+.+.++
T Consensus       145 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~  224 (254)
T 2h00_A          145 MCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCMLGKKCSLAPLKEE  224 (254)
T ss_dssp             EECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEEEEESSTTSHHHHHHH
T ss_pred             EECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEHHHHHHHHhcccceEEEEECCCChhHHHHHHHH
Confidence            9986655421                124566778888888877664200           000000 111245789999


Q ss_pred             HHHCCCeEEE
Q 022592          246 VCDLGFAPVS  255 (294)
Q Consensus       246 l~~~Gf~~~~  255 (294)
                      ++++||..+.
T Consensus       225 l~~~Gf~~v~  234 (254)
T 2h00_A          225 LRIQGVPKVT  234 (254)
T ss_dssp             HHHTTCSEEE
T ss_pred             HHHcCCCceE
Confidence            9999998766

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.15  E-value=5.1e-11  Score=110.67  Aligned_cols=93  Identities=17%  Similarity=0.207  Sum_probs=72.8

Q ss_pred             HHHHHhhccCCCCEEEEEcCcccHHHHHhc-----cceEEEeccCC------------------CCcEEEccCCCCCCCC
Q 022592          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVSN------------------DPSVIACDMSNTPLNS  187 (294)
Q Consensus       131 ~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~~------------------~~~~~~~d~~~lp~~~  187 (294)
                      .+++.+... ++.+|||+|||+|.++..++     ..|+|+|+|+.                  ++.++.+|+.. ++++
T Consensus       213 ~ll~~l~~~-~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~-~~~~  290 (375)
T 4dcm_A          213 FFMQHLPEN-LEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS-GVEP  290 (375)
T ss_dssp             HHHHTCCCS-CCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTT-TCCT
T ss_pred             HHHHhCccc-CCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhc-cCCC
Confidence            456666544 45799999999999988886     37999999971                  35678999887 5667


Q ss_pred             CCccEEEEcccccCC------CHHHHHHHHHHhcCcCcEEEEEe
Q 022592          188 SSVDVAVFCLSLMGI------NFPNYLQEAQRVLKPSGWLLIAE  225 (294)
Q Consensus       188 ~~fD~Vi~~~~l~~~------~~~~~l~el~r~LkpgG~l~i~e  225 (294)
                      ++||+|+++..+++.      ....++.++.++|+|||.++++.
T Consensus       291 ~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~  334 (375)
T 4dcm_A          291 FRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA  334 (375)
T ss_dssp             TCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEE
Confidence            899999999998852      12478999999999999999964

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.15  E-value=3.9e-11  Score=106.21  Aligned_cols=113  Identities=19%  Similarity=0.265  Sum_probs=84.1

Q ss_pred             HHHHHHhhccCCCCEEEEEcCcccHHHHHhc------cceEEEeccC------------------CCCcEEEccCCCCCC
Q 022592          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS------------------NDPSVIACDMSNTPL  185 (294)
Q Consensus       130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~------------------~~~~~~~~d~~~lp~  185 (294)
                      ..++..+... ++.+|||+|||+|.++..++      ..|+++|+++                  .++.++.+|+...++
T Consensus        89 ~~i~~~~~~~-~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~  167 (280)
T 1i9g_A           89 AQIVHEGDIF-PGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSEL  167 (280)
T ss_dssp             HHHHHHTTCC-TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCC
T ss_pred             HHHHHHcCCC-CCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCC
Confidence            3455555433 67799999999999887765      3799999975                  246788899988888


Q ss_pred             CCCCccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHH-CCCeEEE
Q 022592          186 NSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCD-LGFAPVS  255 (294)
Q Consensus       186 ~~~~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~-~Gf~~~~  255 (294)
                      ++++||+|++..    .++..++.++.++|+|||.+++......        ....+...+.+ .||....
T Consensus       168 ~~~~~D~v~~~~----~~~~~~l~~~~~~L~pgG~l~~~~~~~~--------~~~~~~~~l~~~~~f~~~~  226 (280)
T 1i9g_A          168 PDGSVDRAVLDM----LAPWEVLDAVSRLLVAGGVLMVYVATVT--------QLSRIVEALRAKQCWTEPR  226 (280)
T ss_dssp             CTTCEEEEEEES----SCGGGGHHHHHHHEEEEEEEEEEESSHH--------HHHHHHHHHHHHSSBCCCE
T ss_pred             CCCceeEEEECC----cCHHHHHHHHHHhCCCCCEEEEEeCCHH--------HHHHHHHHHHhcCCcCCcE
Confidence            788999999832    3667899999999999999999763211        12455556666 7886543

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.14  E-value=1.5e-10  Score=101.22  Aligned_cols=97  Identities=12%  Similarity=0.102  Sum_probs=73.3

Q ss_pred             HHHHHHHhhccCCCCEEEEEcCcccHHHHHhc------cceEEEeccC----------------CCCcEEEccCCC-CCC
Q 022592          129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----------------NDPSVIACDMSN-TPL  185 (294)
Q Consensus       129 ~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~----------------~~~~~~~~d~~~-lp~  185 (294)
                      ...++..+....++.+|||||||+|..+..++      ..|+++|+++                +++.++.+|+.. ++.
T Consensus        51 ~~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~  130 (248)
T 3tfw_A           51 QGQFLALLVRLTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLES  130 (248)
T ss_dssp             HHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHT
T ss_pred             HHHHHHHHHhhcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHh
Confidence            34455555433356799999999999988776      2799999987                267889998865 332


Q ss_pred             C--CCCccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEeec
Q 022592          186 N--SSSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVK  227 (294)
Q Consensus       186 ~--~~~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e~~  227 (294)
                      .  .++||+|++...  ..+...++.++.++|+|||+|++.++.
T Consensus       131 ~~~~~~fD~V~~d~~--~~~~~~~l~~~~~~LkpGG~lv~~~~~  172 (248)
T 3tfw_A          131 LGECPAFDLIFIDAD--KPNNPHYLRWALRYSRPGTLIIGDNVV  172 (248)
T ss_dssp             CCSCCCCSEEEECSC--GGGHHHHHHHHHHTCCTTCEEEEECCS
T ss_pred             cCCCCCeEEEEECCc--hHHHHHHHHHHHHhcCCCeEEEEeCCC
Confidence            2  348999998653  235678999999999999999987654

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.14  E-value=2.9e-11  Score=98.61  Aligned_cols=96  Identities=11%  Similarity=0.149  Sum_probs=71.7

Q ss_pred             HHHHhhccC-CCCEEEEEcCcccHHHHHhc---cceEEEeccCC--------------CCcEEEccCCCC-C-CC--CCC
Q 022592          132 IVKWLKDHS-PSLVIADFGCGDARLAKSVK---NKVFSFDLVSN--------------DPSVIACDMSNT-P-LN--SSS  189 (294)
Q Consensus       132 ~~~~l~~~~-~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~~--------------~~~~~~~d~~~l-p-~~--~~~  189 (294)
                      ++..+.... ++.+|||+|||+|.++..++   ..|+|+|+++.              ++.++.+|+.+. + ++  .++
T Consensus        31 ~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  110 (171)
T 1ws6_A           31 LFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGER  110 (171)
T ss_dssp             HHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCC
T ss_pred             HHHHHHhhccCCCeEEEeCCCcCHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCc
Confidence            444444322 56799999999999988886   35999999971              678888888662 2 11  247


Q ss_pred             ccEEEEcccccCCCHHHHHHHHH--HhcCcCcEEEEEeecC
Q 022592          190 VDVAVFCLSLMGINFPNYLQEAQ--RVLKPSGWLLIAEVKS  228 (294)
Q Consensus       190 fD~Vi~~~~l~~~~~~~~l~el~--r~LkpgG~l~i~e~~~  228 (294)
                      ||+|++...++ .+...++..+.  ++|+|||.+++.....
T Consensus       111 ~D~i~~~~~~~-~~~~~~~~~~~~~~~L~~gG~~~~~~~~~  150 (171)
T 1ws6_A          111 FTVAFMAPPYA-MDLAALFGELLASGLVEAGGLYVLQHPKD  150 (171)
T ss_dssp             EEEEEECCCTT-SCTTHHHHHHHHHTCEEEEEEEEEEEETT
T ss_pred             eEEEEECCCCc-hhHHHHHHHHHhhcccCCCcEEEEEeCCc
Confidence            99999998776 55667777777  9999999999876443

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.14  E-value=7.8e-11  Score=111.08  Aligned_cols=96  Identities=9%  Similarity=0.051  Sum_probs=71.7

Q ss_pred             HHHHHHHhhccCCCCEEEEEcCcccHHHHHhcc-----ceEEEeccC------------------------CCCcEEEcc
Q 022592          129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVKN-----KVFSFDLVS------------------------NDPSVIACD  179 (294)
Q Consensus       129 ~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~~-----~v~gvD~s~------------------------~~~~~~~~d  179 (294)
                      +..+++.+... ++.+|||||||+|.++..++.     .|+|+|+++                        .++.++.+|
T Consensus       231 v~~ml~~l~l~-~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD  309 (433)
T 1u2z_A          231 LSDVYQQCQLK-KGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKK  309 (433)
T ss_dssp             HHHHHHHTTCC-TTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESS
T ss_pred             HHHHHHhcCCC-CCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcC
Confidence            34455555433 677999999999999888762     699999986                        245566665


Q ss_pred             CCCC--CC--CCCCccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEe
Q 022592          180 MSNT--PL--NSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAE  225 (294)
Q Consensus       180 ~~~l--p~--~~~~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e  225 (294)
                      ....  ++  ..++||+|+++.++...++..++.++.++|+|||.|++.+
T Consensus       310 ~~~~~~~~~~~~~~FDvIvvn~~l~~~d~~~~L~el~r~LKpGG~lVi~d  359 (433)
T 1u2z_A          310 SFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISLK  359 (433)
T ss_dssp             CSTTCHHHHHHGGGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred             ccccccccccccCCCCEEEEeCccccccHHHHHHHHHHhCCCCeEEEEee
Confidence            4321  22  2468999998877754577889999999999999999975

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=99.13  E-value=2e-10  Score=103.84  Aligned_cols=84  Identities=14%  Similarity=0.129  Sum_probs=63.8

Q ss_pred             CCCCEEEEEcCcccHHHHHhccc--eEEEec----cC-------------CCCcEEEc-cCCCCCCCCCCccEEEEcccc
Q 022592          140 SPSLVIADFGCGDARLAKSVKNK--VFSFDL----VS-------------NDPSVIAC-DMSNTPLNSSSVDVAVFCLSL  199 (294)
Q Consensus       140 ~~~~~VLDiGcG~G~~~~~l~~~--v~gvD~----s~-------------~~~~~~~~-d~~~lp~~~~~fD~Vi~~~~l  199 (294)
                      .++.+|||||||+|.++..++..  |+|+|+    ++             +++.++.+ |+..+|  .++||+|+|..++
T Consensus        81 ~~g~~VLDlGcG~G~~s~~la~~~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l~--~~~fD~V~sd~~~  158 (305)
T 2p41_A           81 TPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIP--PERCDTLLCDIGE  158 (305)
T ss_dssp             CCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSC--CCCCSEEEECCCC
T ss_pred             CCCCEEEEEcCCCCHHHHHHHhcCCEEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccCC--cCCCCEEEECCcc
Confidence            35679999999999999998854  999999    33             12456666 777665  5689999997765


Q ss_pred             c--C--CCHH---HHHHHHHHhcCcCcEEEEEe
Q 022592          200 M--G--INFP---NYLQEAQRVLKPSGWLLIAE  225 (294)
Q Consensus       200 ~--~--~~~~---~~l~el~r~LkpgG~l~i~e  225 (294)
                      .  +  .+..   .+|.++.++|+|||.|++..
T Consensus       159 ~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv  191 (305)
T 2p41_A          159 SSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKV  191 (305)
T ss_dssp             CCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred             ccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEe
Confidence            4  1  1222   57888999999999888854

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.13  E-value=1.2e-10  Score=98.74  Aligned_cols=95  Identities=13%  Similarity=0.082  Sum_probs=71.6

Q ss_pred             HHHHHHHhhccCCCCEEEEEcCcccHHHHHhc------cceEEEeccC----------------CCCcEEEccCCCC-CC
Q 022592          129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----------------NDPSVIACDMSNT-PL  185 (294)
Q Consensus       129 ~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~----------------~~~~~~~~d~~~l-p~  185 (294)
                      ...++..+....++.+|||||||+|..+..++      .+|+++|+++                .++.++.+|+... +.
T Consensus        44 ~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~  123 (210)
T 3c3p_A           44 TGRLLYLLARIKQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAG  123 (210)
T ss_dssp             HHHHHHHHHHHHCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTT
T ss_pred             HHHHHHHHHHhhCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhcc
Confidence            34455444333355799999999999988875      2799999997                2467888888653 44


Q ss_pred             CCCCccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEee
Q 022592          186 NSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEV  226 (294)
Q Consensus       186 ~~~~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e~  226 (294)
                      .++ ||+|++...  ..+...++.++.++|+|||.+++.+.
T Consensus       124 ~~~-fD~v~~~~~--~~~~~~~l~~~~~~LkpgG~lv~~~~  161 (210)
T 3c3p_A          124 QRD-IDILFMDCD--VFNGADVLERMNRCLAKNALLIAVNA  161 (210)
T ss_dssp             CCS-EEEEEEETT--TSCHHHHHHHHGGGEEEEEEEEEESS
T ss_pred             CCC-CCEEEEcCC--hhhhHHHHHHHHHhcCCCeEEEEECc
Confidence            456 999998732  34778999999999999999998653

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.12  E-value=3.8e-11  Score=102.78  Aligned_cols=96  Identities=15%  Similarity=0.163  Sum_probs=71.6

Q ss_pred             HHHHHHhhccCCCCEEEEEcCcccHHHHHhc------cceEEEeccC----------------CCCcEEEccCCCC-C-C
Q 022592          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----------------NDPSVIACDMSNT-P-L  185 (294)
Q Consensus       130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~----------------~~~~~~~~d~~~l-p-~  185 (294)
                      ..++..+....++.+|||||||+|..+..++      .+|+++|+++                .++.++.+|+... + +
T Consensus        53 ~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~  132 (225)
T 3tr6_A           53 AQLLALLVKLMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAEL  132 (225)
T ss_dssp             HHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHH
T ss_pred             HHHHHHHHHhhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHh
Confidence            3445544443356799999999999988876      3799999997                2478888888542 2 1


Q ss_pred             CC----CCccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEeec
Q 022592          186 NS----SSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVK  227 (294)
Q Consensus       186 ~~----~~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e~~  227 (294)
                      ..    ++||+|++...  ..+...++.++.++|+|||.|++.++.
T Consensus       133 ~~~~~~~~fD~v~~~~~--~~~~~~~l~~~~~~L~pgG~lv~~~~~  176 (225)
T 3tr6_A          133 IHAGQAWQYDLIYIDAD--KANTDLYYEESLKLLREGGLIAVDNVL  176 (225)
T ss_dssp             HTTTCTTCEEEEEECSC--GGGHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred             hhccCCCCccEEEECCC--HHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence            11    78999996543  235778999999999999999997644

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.12  E-value=1.8e-10  Score=102.26  Aligned_cols=85  Identities=16%  Similarity=0.212  Sum_probs=71.1

Q ss_pred             CCCCEEEEEcCcccHHHHHhc---c--ceEEEeccC---------------CCCcEEEccCCCCCCCCCCccEEEEcccc
Q 022592          140 SPSLVIADFGCGDARLAKSVK---N--KVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVDVAVFCLSL  199 (294)
Q Consensus       140 ~~~~~VLDiGcG~G~~~~~l~---~--~v~gvD~s~---------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l  199 (294)
                      .++.+|||+|||+|.++..++   .  .|+|+|+++               .++.++.+|+...+. .++||+|++....
T Consensus       118 ~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~-~~~~D~Vi~d~p~  196 (272)
T 3a27_A          118 NENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVEL-KDVADRVIMGYVH  196 (272)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCC-TTCEEEEEECCCS
T ss_pred             CCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCc-cCCceEEEECCcc
Confidence            467799999999999988876   2  799999997               356799999988744 6789999987664


Q ss_pred             cCCCHHHHHHHHHHhcCcCcEEEEEeecC
Q 022592          200 MGINFPNYLQEAQRVLKPSGWLLIAEVKS  228 (294)
Q Consensus       200 ~~~~~~~~l~el~r~LkpgG~l~i~e~~~  228 (294)
                         +...++.++.++|+|||.++++....
T Consensus       197 ---~~~~~l~~~~~~LkpgG~l~~s~~~~  222 (272)
T 3a27_A          197 ---KTHKFLDKTFEFLKDRGVIHYHETVA  222 (272)
T ss_dssp             ---SGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred             ---cHHHHHHHHHHHcCCCCEEEEEEcCc
Confidence               66789999999999999999987654

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.10  E-value=6.3e-11  Score=108.62  Aligned_cols=95  Identities=18%  Similarity=0.236  Sum_probs=75.1

Q ss_pred             HHHHHHHhhccCCCCEEEEEcCcccHHHHHhc-----cceEEEeccCC--------------CCcEEEccCCCCCCCCCC
Q 022592          129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVSN--------------DPSVIACDMSNTPLNSSS  189 (294)
Q Consensus       129 ~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~~--------------~~~~~~~d~~~lp~~~~~  189 (294)
                      ...+++.+... ++.+|||||||+|.++..++     ..|+|+|+|+.              ...++.+|+...+  +++
T Consensus       185 ~~~ll~~l~~~-~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~--~~~  261 (343)
T 2pjd_A          185 SQLLLSTLTPH-TKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEV--KGR  261 (343)
T ss_dssp             HHHHHHHSCTT-CCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTC--CSC
T ss_pred             HHHHHHhcCcC-CCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccc--cCC
Confidence            45566666443 45689999999999988876     27999999971              3567788887644  678


Q ss_pred             ccEEEEcccccCC------CHHHHHHHHHHhcCcCcEEEEEee
Q 022592          190 VDVAVFCLSLMGI------NFPNYLQEAQRVLKPSGWLLIAEV  226 (294)
Q Consensus       190 fD~Vi~~~~l~~~------~~~~~l~el~r~LkpgG~l~i~e~  226 (294)
                      ||+|+++..+++.      +...++.++.++|+|||.++++..
T Consensus       262 fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  304 (343)
T 2pjd_A          262 FDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVAN  304 (343)
T ss_dssp             EEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred             eeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEc
Confidence            9999999998861      457899999999999999999753

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.10  E-value=1.8e-10  Score=99.15  Aligned_cols=96  Identities=11%  Similarity=0.100  Sum_probs=71.8

Q ss_pred             HHHHHHHhhccCCCC---EEEEEcCcccHHHHHhc------cceEEEeccC-----------------CCCcEEEccCCC
Q 022592          129 VNIIVKWLKDHSPSL---VIADFGCGDARLAKSVK------NKVFSFDLVS-----------------NDPSVIACDMSN  182 (294)
Q Consensus       129 ~~~~~~~l~~~~~~~---~VLDiGcG~G~~~~~l~------~~v~gvD~s~-----------------~~~~~~~~d~~~  182 (294)
                      ...++..+....+..   +|||||||+|..+..++      .+|+++|+++                 .++.++.+|+.+
T Consensus        41 ~~~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~  120 (221)
T 3dr5_A           41 TGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLD  120 (221)
T ss_dssp             HHHHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHH
T ss_pred             HHHHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHH
Confidence            344555554443334   89999999999888775      3799999997                 147788888765


Q ss_pred             C-C-CCCCCccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEee
Q 022592          183 T-P-LNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEV  226 (294)
Q Consensus       183 l-p-~~~~~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e~  226 (294)
                      . + +++++||+|++...  ..+...++.++.++|+|||+|++.++
T Consensus       121 ~l~~~~~~~fD~V~~d~~--~~~~~~~l~~~~~~LkpGG~lv~dn~  164 (221)
T 3dr5_A          121 VMSRLANDSYQLVFGQVS--PMDLKALVDAAWPLLRRGGALVLADA  164 (221)
T ss_dssp             HGGGSCTTCEEEEEECCC--TTTHHHHHHHHHHHEEEEEEEEETTT
T ss_pred             HHHHhcCCCcCeEEEcCc--HHHHHHHHHHHHHHcCCCcEEEEeCC
Confidence            3 2 33688999998643  24677899999999999999999654

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.10  E-value=1.8e-10  Score=100.47  Aligned_cols=84  Identities=20%  Similarity=0.369  Sum_probs=66.0

Q ss_pred             CCCEEEEEcCcccHHHHHhc-----cceEEEeccC-----------------------CCCcEEEccCCC-CC--CCCCC
Q 022592          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS-----------------------NDPSVIACDMSN-TP--LNSSS  189 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~-----------------------~~~~~~~~d~~~-lp--~~~~~  189 (294)
                      ++.+|||||||+|.++..++     ..|+|+|+|+                       .++.++.+|+.. ++  ++.++
T Consensus        49 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~~  128 (246)
T 2vdv_E           49 KKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKGQ  128 (246)
T ss_dssp             CCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTTC
T ss_pred             CCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccccc
Confidence            55689999999999998886     2699999985                       256789999986 66  67789


Q ss_pred             ccEEEEcccccCCC---------HHHHHHHHHHhcCcCcEEEEE
Q 022592          190 VDVAVFCLSLMGIN---------FPNYLQEAQRVLKPSGWLLIA  224 (294)
Q Consensus       190 fD~Vi~~~~l~~~~---------~~~~l~el~r~LkpgG~l~i~  224 (294)
                      +|.|++...-.+..         ...++.++.++|+|||.|++.
T Consensus       129 ~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~  172 (246)
T 2vdv_E          129 LSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTI  172 (246)
T ss_dssp             EEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEE
T ss_pred             cCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEE
Confidence            99998654322210         158999999999999999995

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.09  E-value=5.2e-10  Score=103.74  Aligned_cols=110  Identities=15%  Similarity=0.219  Sum_probs=84.7

Q ss_pred             HHHHHhhccCCCCEEEEEcCcccHHHHHhc---c--ceEEEeccC----------------CCCcEEEccCCCCCCCCCC
Q 022592          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK---N--KVFSFDLVS----------------NDPSVIACDMSNTPLNSSS  189 (294)
Q Consensus       131 ~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~--~v~gvD~s~----------------~~~~~~~~d~~~lp~~~~~  189 (294)
                      .++...  ..++.+|||+|||+|.++..++   .  .|+|+|+++                .++.+.++|+..+++++++
T Consensus       209 ~l~~~~--~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~  286 (373)
T 3tm4_A          209 AMIELA--ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDS  286 (373)
T ss_dssp             HHHHHH--TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSC
T ss_pred             HHHHhh--cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCC
Confidence            344444  3467799999999999988876   2  899999997                2678999999999988889


Q ss_pred             ccEEEEcccccCC-----C----HHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEE
Q 022592          190 VDVAVFCLSLMGI-----N----FPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVS  255 (294)
Q Consensus       190 fD~Vi~~~~l~~~-----~----~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~  255 (294)
                      ||+|+++..+...     .    ...++.++.++|  ||.++++.           .+.+.+.+.+.+.||++..
T Consensus       287 fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~-----------~~~~~~~~~~~~~G~~~~~  348 (373)
T 3tm4_A          287 VDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFIT-----------TEKKAIEEAIAENGFEIIH  348 (373)
T ss_dssp             EEEEEEECCCC------CCHHHHHHHHHHHHHHHE--EEEEEEEE-----------SCHHHHHHHHHHTTEEEEE
T ss_pred             cCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEE-----------CCHHHHHHHHHHcCCEEEE
Confidence            9999998765531     1    257888999988  44444442           1568888999999999877

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=99.09  E-value=3.8e-10  Score=97.85  Aligned_cols=125  Identities=14%  Similarity=0.075  Sum_probs=89.0

Q ss_pred             CCCCEEEEEcCcccHHHHHhc--cceEEEeccC--------------CCCcEEEccCCCCCCCCCCccEEEEcccccCC-
Q 022592          140 SPSLVIADFGCGDARLAKSVK--NKVFSFDLVS--------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGI-  202 (294)
Q Consensus       140 ~~~~~VLDiGcG~G~~~~~l~--~~v~gvD~s~--------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~-  202 (294)
                      .+..+|||||||.|.++..+.  ..++|+|+++              .+..+.++|....+++. +||+|++.-++|+. 
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~~-~~DvvLllk~lh~LE  182 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYERGIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPAE-AGDLALIFKLLPLLE  182 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHTTCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCCC-BCSEEEEESCHHHHH
T ss_pred             CCCCeEEEecCCccHHHHHhccCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCCC-CcchHHHHHHHHHhh
Confidence            356799999999999998765  4899999998              34567889998888654 89999999888874 


Q ss_pred             --CHHHHHHHHHHhcCcCcEEEEEeecCCCCCC--CCCCCHHHHHHHHHHCCCeEEEEeccCCeEEEE
Q 022592          203 --NFPNYLQEAQRVLKPSGWLLIAEVKSRFDPN--TGGADPNKFSKAVCDLGFAPVSKDFSNKMFIMF  266 (294)
Q Consensus       203 --~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~--~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~f~~i  266 (294)
                        .....+ .+...|+++|.++-.+..+-.+..  ........|...+...++.+....+.+..++++
T Consensus       183 ~q~~~~~~-~ll~aL~~~~vvVsfPtksl~Gr~~gm~~~Y~~~~e~~~~~~~~~~~~~~~~nEl~~~i  249 (253)
T 3frh_A          183 REQAGSAM-ALLQSLNTPRMAVSFPTRSLGGRGKGMEANYAAWFEGGLPAEFEIEDKKTIGTELIYLI  249 (253)
T ss_dssp             HHSTTHHH-HHHHHCBCSEEEEEEECC-----------CHHHHHHHHSCTTEEEEEEEEETTEEEEEE
T ss_pred             hhchhhHH-HHHHHhcCCCEEEEcChHHhcCCCcchhhHHHHHHHHHhhccchhhhheecCceEEEEE
Confidence              333444 788899999888887633322211  111233556666655666666688888888877

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=99.09  E-value=6.7e-10  Score=105.52  Aligned_cols=119  Identities=16%  Similarity=0.248  Sum_probs=85.0

Q ss_pred             HHHHhhccCCCCEEEEEcCcccHHHHHhc------cceEEEeccC---------------CCCcEEEccCCCCC--CCCC
Q 022592          132 IVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS---------------NDPSVIACDMSNTP--LNSS  188 (294)
Q Consensus       132 ~~~~l~~~~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~---------------~~~~~~~~d~~~lp--~~~~  188 (294)
                      ++..+....++.+|||+|||+|..+..++      ..|+|+|+++               .++.++.+|+..++  ++++
T Consensus       250 l~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~  329 (450)
T 2yxl_A          250 VASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEE  329 (450)
T ss_dssp             HHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSS
T ss_pred             HHHHhcCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccC
Confidence            33333333467899999999999888775      3799999997               26778889998876  5557


Q ss_pred             CccEEEEc------ccccC-CCH----------------HHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHH
Q 022592          189 SVDVAVFC------LSLMG-INF----------------PNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKA  245 (294)
Q Consensus       189 ~fD~Vi~~------~~l~~-~~~----------------~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~  245 (294)
                      +||+|++.      .++.+ .+.                ..++.++.++|+|||.|++++..-...     -+.+.+..+
T Consensus       330 ~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~~~-----ene~~v~~~  404 (450)
T 2yxl_A          330 VADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIFKE-----ENEKNIRWF  404 (450)
T ss_dssp             CEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGG-----GTHHHHHHH
T ss_pred             CCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChh-----hHHHHHHHH
Confidence            89999962      22222 221                578999999999999999987542211     134567778


Q ss_pred             HHHC-CCeEEE
Q 022592          246 VCDL-GFAPVS  255 (294)
Q Consensus       246 l~~~-Gf~~~~  255 (294)
                      ++.. ||+.+.
T Consensus       405 l~~~~~~~~~~  415 (450)
T 2yxl_A          405 LNVHPEFKLVP  415 (450)
T ss_dssp             HHHCSSCEECC
T ss_pred             HHhCCCCEEee
Confidence            8887 787654

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.08  E-value=2.5e-10  Score=98.10  Aligned_cols=90  Identities=13%  Similarity=0.217  Sum_probs=70.8

Q ss_pred             HHHHHHhh-ccCCCCEEEEEcCcccHHHHHhcc-----------ceEEEeccC--------------------CCCcEEE
Q 022592          130 NIIVKWLK-DHSPSLVIADFGCGDARLAKSVKN-----------KVFSFDLVS--------------------NDPSVIA  177 (294)
Q Consensus       130 ~~~~~~l~-~~~~~~~VLDiGcG~G~~~~~l~~-----------~v~gvD~s~--------------------~~~~~~~  177 (294)
                      ..+++.+. ...++.+|||||||+|.++..++.           .|+++|+++                    .++.+..
T Consensus        72 ~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~  151 (227)
T 1r18_A           72 AFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVE  151 (227)
T ss_dssp             HHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred             HHHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEE
Confidence            44566664 234677999999999998877652           799999986                    2577888


Q ss_pred             ccCCCCCCCC-CCccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEe
Q 022592          178 CDMSNTPLNS-SSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAE  225 (294)
Q Consensus       178 ~d~~~lp~~~-~~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e  225 (294)
                      +|+.. ++++ ++||+|++..++++..     .++.++|+|||++++..
T Consensus       152 ~d~~~-~~~~~~~fD~I~~~~~~~~~~-----~~~~~~LkpgG~lvi~~  194 (227)
T 1r18_A          152 GDGRK-GYPPNAPYNAIHVGAAAPDTP-----TELINQLASGGRLIVPV  194 (227)
T ss_dssp             SCGGG-CCGGGCSEEEEEECSCBSSCC-----HHHHHTEEEEEEEEEEE
T ss_pred             CCccc-CCCcCCCccEEEECCchHHHH-----HHHHHHhcCCCEEEEEE
Confidence            89876 4444 7899999999988754     68899999999999974

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.08  E-value=2.2e-10  Score=99.10  Aligned_cols=90  Identities=21%  Similarity=0.291  Sum_probs=69.6

Q ss_pred             HHHHHHHhhccCCCCEEEEEcCcccHHHHHhc----cceEEEeccC---------------CCCcEEEccCCCCCCCCC-
Q 022592          129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS---------------NDPSVIACDMSNTPLNSS-  188 (294)
Q Consensus       129 ~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~---------------~~~~~~~~d~~~lp~~~~-  188 (294)
                      ...+++.+... ++.+|||||||+|.++..++    ..|+++|+++               .++.+..+|+ ..++++. 
T Consensus        80 ~~~~~~~l~~~-~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~-~~~~~~~~  157 (235)
T 1jg1_A           80 VAIMLEIANLK-PGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDG-SKGFPPKA  157 (235)
T ss_dssp             HHHHHHHHTCC-TTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCG-GGCCGGGC
T ss_pred             HHHHHHhcCCC-CCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCc-ccCCCCCC
Confidence            34455555433 66799999999999988776    4899999987               2577888887 3444443 


Q ss_pred             CccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEe
Q 022592          189 SVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAE  225 (294)
Q Consensus       189 ~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e  225 (294)
                      .||+|++..++++..     .++.++|+|||.+++..
T Consensus       158 ~fD~Ii~~~~~~~~~-----~~~~~~L~pgG~lvi~~  189 (235)
T 1jg1_A          158 PYDVIIVTAGAPKIP-----EPLIEQLKIGGKLIIPV  189 (235)
T ss_dssp             CEEEEEECSBBSSCC-----HHHHHTEEEEEEEEEEE
T ss_pred             CccEEEECCcHHHHH-----HHHHHhcCCCcEEEEEE
Confidence            599999999988754     37889999999999975

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.08  E-value=1.5e-10  Score=101.08  Aligned_cols=85  Identities=15%  Similarity=0.169  Sum_probs=65.9

Q ss_pred             CCCEEEEEcCcccHHHHHhc-------cceEEEeccC-----------CC------------------------------
Q 022592          141 PSLVIADFGCGDARLAKSVK-------NKVFSFDLVS-----------ND------------------------------  172 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~-------~~v~gvD~s~-----------~~------------------------------  172 (294)
                      ++.+|||+|||+|.++..++       ..|+|+|+|+           ..                              
T Consensus        51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (250)
T 1o9g_A           51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA  130 (250)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred             CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhh
Confidence            45689999999999887664       2689999997           12                              


Q ss_pred             ---Cc-------------EEEccCCCCCC-----CCCCccEEEEcccccCC-C---------HHHHHHHHHHhcCcCcEE
Q 022592          173 ---PS-------------VIACDMSNTPL-----NSSSVDVAVFCLSLMGI-N---------FPNYLQEAQRVLKPSGWL  221 (294)
Q Consensus       173 ---~~-------------~~~~d~~~lp~-----~~~~fD~Vi~~~~l~~~-~---------~~~~l~el~r~LkpgG~l  221 (294)
                         +.             +..+|+.....     ...+||+|+++..+.+. +         ...++.++.++|+|||++
T Consensus       131 ~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l  210 (250)
T 1o9g_A          131 ARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVI  210 (250)
T ss_dssp             HHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEE
T ss_pred             hhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcEE
Confidence               45             88899877431     34589999998776542 2         348999999999999999


Q ss_pred             EEEe
Q 022592          222 LIAE  225 (294)
Q Consensus       222 ~i~e  225 (294)
                      +++.
T Consensus       211 ~~~~  214 (250)
T 1o9g_A          211 AVTD  214 (250)
T ss_dssp             EEEE
T ss_pred             EEeC
Confidence            9954

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.08  E-value=2e-10  Score=98.52  Aligned_cols=91  Identities=19%  Similarity=0.183  Sum_probs=71.4

Q ss_pred             HHHHHhh-ccCCCCEEEEEcCcccHHHHHhc---c-------ceEEEeccC--------------------CCCcEEEcc
Q 022592          131 IIVKWLK-DHSPSLVIADFGCGDARLAKSVK---N-------KVFSFDLVS--------------------NDPSVIACD  179 (294)
Q Consensus       131 ~~~~~l~-~~~~~~~VLDiGcG~G~~~~~l~---~-------~v~gvD~s~--------------------~~~~~~~~d  179 (294)
                      .+++.+. ...++.+|||||||+|.++..++   .       .|+++|+++                    .++.++.+|
T Consensus        69 ~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d  148 (227)
T 2pbf_A           69 LSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKN  148 (227)
T ss_dssp             HHHHHHTTTSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECC
T ss_pred             HHHHHHHhhCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECC
Confidence            3555553 23467799999999999887765   3       799999986                    157788899


Q ss_pred             CCCCC----CCCCCccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEee
Q 022592          180 MSNTP----LNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEV  226 (294)
Q Consensus       180 ~~~lp----~~~~~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e~  226 (294)
                      +...+    ...++||+|++..++++.     +.++.++|+|||.+++...
T Consensus       149 ~~~~~~~~~~~~~~fD~I~~~~~~~~~-----~~~~~~~LkpgG~lv~~~~  194 (227)
T 2pbf_A          149 IYQVNEEEKKELGLFDAIHVGASASEL-----PEILVDLLAENGKLIIPIE  194 (227)
T ss_dssp             GGGCCHHHHHHHCCEEEEEECSBBSSC-----CHHHHHHEEEEEEEEEEEE
T ss_pred             hHhcccccCccCCCcCEEEECCchHHH-----HHHHHHhcCCCcEEEEEEc
Confidence            88755    556789999999888764     4788999999999999743

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.07  E-value=2.5e-10  Score=97.79  Aligned_cols=90  Identities=18%  Similarity=0.179  Sum_probs=71.0

Q ss_pred             HHHHHhh-ccCCCCEEEEEcCcccHHHHHhc------cceEEEeccC--------------------CCCcEEEccCCCC
Q 022592          131 IIVKWLK-DHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS--------------------NDPSVIACDMSNT  183 (294)
Q Consensus       131 ~~~~~l~-~~~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~--------------------~~~~~~~~d~~~l  183 (294)
                      .++..+. ...++.+|||||||+|.++..++      ..|+++|+++                    .++.++.+|+...
T Consensus        66 ~~l~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~  145 (226)
T 1i1n_A           66 YALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMG  145 (226)
T ss_dssp             HHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGC
T ss_pred             HHHHHHHhhCCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccC
Confidence            4555554 22367799999999999888765      3799999986                    1577888998776


Q ss_pred             CCCCCCccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEe
Q 022592          184 PLNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAE  225 (294)
Q Consensus       184 p~~~~~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e  225 (294)
                      +...++||+|++...+++.     +.++.++|+|||.+++..
T Consensus       146 ~~~~~~fD~i~~~~~~~~~-----~~~~~~~LkpgG~lv~~~  182 (226)
T 1i1n_A          146 YAEEAPYDAIHVGAAAPVV-----PQALIDQLKPGGRLILPV  182 (226)
T ss_dssp             CGGGCCEEEEEECSBBSSC-----CHHHHHTEEEEEEEEEEE
T ss_pred             cccCCCcCEEEECCchHHH-----HHHHHHhcCCCcEEEEEE
Confidence            6567789999999888654     368899999999999975

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.07  E-value=3.7e-10  Score=103.21  Aligned_cols=117  Identities=14%  Similarity=0.053  Sum_probs=81.8

Q ss_pred             HHHHhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccC---------------C--CCcEEEccCCCCCCC----C
Q 022592          132 IVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS---------------N--DPSVIACDMSNTPLN----S  187 (294)
Q Consensus       132 ~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~---------------~--~~~~~~~d~~~lp~~----~  187 (294)
                      +...+....++.+|||+|||+|.++..++   ..|+++|+|+               .  ++.++++|+.++...    .
T Consensus       144 l~~~~~~~~~~~~VLDlgcGtG~~sl~la~~ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~  223 (332)
T 2igt_A          144 LKNAVETADRPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRG  223 (332)
T ss_dssp             HHHHHHHSSSCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHT
T ss_pred             HHHHHHhcCCCCcEEEcccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcC
Confidence            44444322255799999999999998886   3899999997               1  378888888764321    4


Q ss_pred             CCccEEEEcccccC-----------CCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHH----HCCCe
Q 022592          188 SSVDVAVFCLSLMG-----------INFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVC----DLGFA  252 (294)
Q Consensus       188 ~~fD~Vi~~~~l~~-----------~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~----~~Gf~  252 (294)
                      ++||+|++......           .+...++.++.++|+|||.|++.......      .+.+.+.+++.    ++|+.
T Consensus       224 ~~fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~~~------~~~~~~~~~l~~a~~~~g~~  297 (332)
T 2igt_A          224 STYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSIR------ASFYSMHELMRETMRGAGGV  297 (332)
T ss_dssp             CCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTT------SCHHHHHHHHHHHTTTSCSE
T ss_pred             CCceEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCCCC------CCHHHHHHHHHHHHHHcCCe
Confidence            68999999543211           14568999999999999998776543321      24566666555    78887


Q ss_pred             EE
Q 022592          253 PV  254 (294)
Q Consensus       253 ~~  254 (294)
                      +.
T Consensus       298 v~  299 (332)
T 2igt_A          298 VA  299 (332)
T ss_dssp             EE
T ss_pred             EE
Confidence            65

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.06  E-value=7.8e-10  Score=98.83  Aligned_cols=120  Identities=18%  Similarity=0.204  Sum_probs=80.7

Q ss_pred             HHHHhhccCCCCEEEEEcCcccHHHHHhc----cceEEEeccC----------------CCCcEEEccCCCCCCCCCCc-
Q 022592          132 IVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSV-  190 (294)
Q Consensus       132 ~~~~l~~~~~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~----------------~~~~~~~~d~~~lp~~~~~f-  190 (294)
                      ++..+... ++.+|||+|||+|.++..++    ..|+|+|+|+                .++.++.+|+... ++ ++| 
T Consensus       115 ~l~~~~~~-~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~-~~-~~f~  191 (284)
T 1nv8_A          115 ALELIRKY-GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEP-FK-EKFA  191 (284)
T ss_dssp             HHHHHHHH-TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGG-GG-GGTT
T ss_pred             HHHHhccc-CCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhh-cc-cccC
Confidence            44444323 45699999999999988876    3799999997                1378999999772 32 478 


Q ss_pred             --cEEEEccccc-----------CC---------CHHHHHHHHH-HhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHH
Q 022592          191 --DVAVFCLSLM-----------GI---------NFPNYLQEAQ-RVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVC  247 (294)
Q Consensus       191 --D~Vi~~~~l~-----------~~---------~~~~~l~el~-r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~  247 (294)
                        |+|+++....           |.         +...+++++. +.|+|||++++ ++...        ..+.+..++.
T Consensus       192 ~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~-e~~~~--------q~~~v~~~~~  262 (284)
T 1nv8_A          192 SIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLM-EIGED--------QVEELKKIVS  262 (284)
T ss_dssp             TCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEE-ECCTT--------CHHHHTTTST
T ss_pred             CCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEE-EECch--------HHHHHHHHHH
Confidence              9999973221           21         2237899999 99999999998 33221        2356666666


Q ss_pred             HCCCeEEEEeccCCeEEEE
Q 022592          248 DLGFAPVSKDFSNKMFIMF  266 (294)
Q Consensus       248 ~~Gf~~~~~~~~~~~f~~i  266 (294)
                      +.   .+..+.....-.++
T Consensus       263 ~~---~~~~D~~g~~R~~~  278 (284)
T 1nv8_A          263 DT---VFLKDSAGKYRFLL  278 (284)
T ss_dssp             TC---EEEECTTSSEEEEE
T ss_pred             hC---CeecccCCCceEEE
Confidence            65   34455544443333

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=99.04  E-value=3.8e-10  Score=98.83  Aligned_cols=124  Identities=13%  Similarity=0.139  Sum_probs=92.5

Q ss_pred             CCCEEEEEcCcccHHHHHhc-----cceEEEeccC--------------CCCcEEEccCCCCCCCCCCccEEEEcccccC
Q 022592          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS--------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMG  201 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~--------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~  201 (294)
                      +..+|||||||+|.++..++     ..|+++|+++              ....+.+.|....+ +.+.||+|++.-++++
T Consensus       132 ~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~-p~~~~DvaL~lkti~~  210 (281)
T 3lcv_B          132 RPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDR-LDEPADVTLLLKTLPC  210 (281)
T ss_dssp             CCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSC-CCSCCSEEEETTCHHH
T ss_pred             CCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccC-CCCCcchHHHHHHHHH
Confidence            45699999999999998885     3899999998              24567788887655 3577999999999999


Q ss_pred             CCHH---HHHHHHHHhcCcCcEEEEEeecCCCCCCCC--CCCHHHHHHHHHHCCCeEEEEeccCCeEEEE
Q 022592          202 INFP---NYLQEAQRVLKPSGWLLIAEVKSRFDPNTG--GADPNKFSKAVCDLGFAPVSKDFSNKMFIMF  266 (294)
Q Consensus       202 ~~~~---~~l~el~r~LkpgG~l~i~e~~~~~~~~~~--~~~~~~~~~~l~~~Gf~~~~~~~~~~~f~~i  266 (294)
                      .+.+   ..+ .+...|+|+|.++-.+..+-.+...+  ......|...+...|+.+....+.+..++++
T Consensus       211 Le~q~kg~g~-~ll~aL~~~~vvVSfp~ksl~Grs~gm~~~Y~~~~e~~~~~~g~~~~~~~~~nEl~y~i  279 (281)
T 3lcv_B          211 LETQQRGSGW-EVIDIVNSPNIVVTFPTKSLGQRSKGMFQNYSQSFESQARERSCRIQRLEIGNELIYVI  279 (281)
T ss_dssp             HHHHSTTHHH-HHHHHSSCSEEEEEEECC-------CHHHHHHHHHHHHHHHHTCCEEEEEETTEEEEEE
T ss_pred             hhhhhhHHHH-HHHHHhCCCCEEEeccchhhcCCCcchhhHHHHHHHHHHHhcCCceeeeeecCeeEEEe
Confidence            5332   445 89999999999998775332222111  1234577788888999988899999888876

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.04  E-value=1.6e-09  Score=91.10  Aligned_cols=99  Identities=13%  Similarity=0.138  Sum_probs=73.6

Q ss_pred             CCCEEEEEcCcccHHHHHhc----cceEEEeccC----------CCCcEEEccCCCCCCCCCCccEEEEcccccCCC---
Q 022592          141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVS----------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGIN---  203 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~----------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~~---  203 (294)
                      ++.+|||+|||+|.++..++    ..|+|+|+++          .++.++.+|+..++   ++||+|+++..+++..   
T Consensus        51 ~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~~~---~~~D~v~~~~p~~~~~~~~  127 (200)
T 1ne2_A           51 GGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCGGVNFMVADVSEIS---GKYDTWIMNPPFGSVVKHS  127 (200)
T ss_dssp             BTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCTTSEEEECCGGGCC---CCEEEEEECCCC-------
T ss_pred             CCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcCCCEEEECcHHHCC---CCeeEEEECCCchhccCch
Confidence            56799999999999988876    2699999997          26889999998865   6899999999998852   


Q ss_pred             HHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEE
Q 022592          204 FPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVS  255 (294)
Q Consensus       204 ~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~  255 (294)
                      ...++.++.+++  |+ ++++.-.         -+...+.+++...| .+..
T Consensus       128 ~~~~l~~~~~~~--g~-~~~~~~~---------~~~~~~~~~~~~~g-~~~~  166 (200)
T 1ne2_A          128 DRAFIDKAFETS--MW-IYSIGNA---------KARDFLRREFSARG-DVFR  166 (200)
T ss_dssp             CHHHHHHHHHHE--EE-EEEEEEG---------GGHHHHHHHHHHHE-EEEE
T ss_pred             hHHHHHHHHHhc--Cc-EEEEEcC---------chHHHHHHHHHHCC-CEEE
Confidence            357899999998  44 4443211         13466788888888 5544

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.03  E-value=3.1e-10  Score=99.31  Aligned_cols=95  Identities=13%  Similarity=0.096  Sum_probs=71.8

Q ss_pred             HHHHHHhhccCCCCEEEEEcCcccHHHHHhc------cceEEEeccC----------------CCCcEEEccCCCC-C-C
Q 022592          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----------------NDPSVIACDMSNT-P-L  185 (294)
Q Consensus       130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~----------------~~~~~~~~d~~~l-p-~  185 (294)
                      ..++..+....++.+|||||||+|..+..++      .+|+++|+++                .++.++.+|+... + +
T Consensus        68 ~~ll~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l  147 (247)
T 1sui_A           68 GQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEM  147 (247)
T ss_dssp             HHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHH
T ss_pred             HHHHHHHHHhhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHH
Confidence            3445544443356799999999999888775      3799999997                2467888887653 3 2


Q ss_pred             -----CCCCccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEee
Q 022592          186 -----NSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEV  226 (294)
Q Consensus       186 -----~~~~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e~  226 (294)
                           ++++||+|++...  ..+...++.++.++|+|||.|++.++
T Consensus       148 ~~~~~~~~~fD~V~~d~~--~~~~~~~l~~~~~~LkpGG~lv~d~~  191 (247)
T 1sui_A          148 IKDEKNHGSYDFIFVDAD--KDNYLNYHKRLIDLVKVGGVIGYDNT  191 (247)
T ss_dssp             HHSGGGTTCBSEEEECSC--STTHHHHHHHHHHHBCTTCCEEEECT
T ss_pred             HhccCCCCCEEEEEEcCc--hHHHHHHHHHHHHhCCCCeEEEEecC
Confidence                 1578999998654  24678999999999999999998653

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.03  E-value=8.5e-10  Score=102.27  Aligned_cols=108  Identities=11%  Similarity=0.095  Sum_probs=82.2

Q ss_pred             CCCEEEEEcCcccHHHHHhc-----cceEEEeccC---------------CCCcEEEccCCC-CCC-CCCCccEEEEccc
Q 022592          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSN-TPL-NSSSVDVAVFCLS  198 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~---------------~~~~~~~~d~~~-lp~-~~~~fD~Vi~~~~  198 (294)
                      ++.+|||+| |+|.++..++     ..|+|+|+++               .++.++.+|+.. +|. .+++||+|+++..
T Consensus       172 ~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~p  250 (373)
T 2qm3_A          172 ENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDPP  250 (373)
T ss_dssp             TTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECCC
T ss_pred             CCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECCC
Confidence            467999999 9999988775     3799999986               268899999988 664 3568999999876


Q ss_pred             ccCCCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCH---HHHHHHHH-HCCCeEEE
Q 022592          199 LMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADP---NKFSKAVC-DLGFAPVS  255 (294)
Q Consensus       199 l~~~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~---~~~~~~l~-~~Gf~~~~  255 (294)
                      ++......++.++.++|+|||.+++.++...      ..+.   ..+..++. ..||.+..
T Consensus       251 ~~~~~~~~~l~~~~~~LkpgG~~~~~~~~~~------~~~~~~~~~~~~~l~~~~g~~~~~  305 (373)
T 2qm3_A          251 ETLEAIRAFVGRGIATLKGPRCAGYFGITRR------ESSLDKWREIQKLLLNEFNVVITD  305 (373)
T ss_dssp             SSHHHHHHHHHHHHHTBCSTTCEEEEEECTT------TCCHHHHHHHHHHHHHTSCCEEEE
T ss_pred             CchHHHHHHHHHHHHHcccCCeEEEEEEecC------cCCHHHHHHHHHHHHHhcCcchhh
Confidence            5543457899999999999996544444321      1244   56777787 89998765

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.03  E-value=9.1e-10  Score=95.32  Aligned_cols=111  Identities=14%  Similarity=0.215  Sum_probs=80.6

Q ss_pred             HHHHHhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccC----------------CCCcEEEccCCCCCCCCCCcc
Q 022592          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSVD  191 (294)
Q Consensus       131 ~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~----------------~~~~~~~~d~~~lp~~~~~fD  191 (294)
                      .++..+... ++.+|||+|||+|.++..++   ..|+++|+++                .++.+..+|+....+++++||
T Consensus        82 ~~~~~~~~~-~~~~vldiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D  160 (248)
T 2yvl_A           82 YIALKLNLN-KEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGIFH  160 (248)
T ss_dssp             HHHHHTTCC-TTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTCBS
T ss_pred             HHHHhcCCC-CCCEEEEeCCCccHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCccc
Confidence            344444433 67799999999999888776   4899999986                256788888887543567899


Q ss_pred             EEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEE
Q 022592          192 VAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVS  255 (294)
Q Consensus       192 ~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~  255 (294)
                      +|++..    .++..++.++.++|+|||.+++......        ...++...+.+. |..+.
T Consensus       161 ~v~~~~----~~~~~~l~~~~~~L~~gG~l~~~~~~~~--------~~~~~~~~l~~~-f~~~~  211 (248)
T 2yvl_A          161 AAFVDV----REPWHYLEKVHKSLMEGAPVGFLLPTAN--------QVIKLLESIENY-FGNLE  211 (248)
T ss_dssp             EEEECS----SCGGGGHHHHHHHBCTTCEEEEEESSHH--------HHHHHHHHSTTT-EEEEE
T ss_pred             EEEECC----cCHHHHHHHHHHHcCCCCEEEEEeCCHH--------HHHHHHHHHHhh-CCcce
Confidence            999742    3677899999999999999999763210        124555566655 65444

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.03  E-value=1.6e-10  Score=110.73  Aligned_cols=82  Identities=21%  Similarity=0.324  Sum_probs=68.3

Q ss_pred             CCCEEEEEcCcccHHHHHhc----cceEEEeccC---------------CCCcEEEccCCCCCCCCCCccEEEEcccccC
Q 022592          141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMG  201 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~---------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~  201 (294)
                      ++.+|||||||+|.++..++    .+|+|+|+|+               .++.++.+|+.+++++ ++||+|++...++|
T Consensus       158 ~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~-~~fD~Ivs~~~~~~  236 (480)
T 3b3j_A          158 KDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP-EQVDIIISEPMGYM  236 (480)
T ss_dssp             TTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEECCCCHHH
T ss_pred             CCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhhCccC-CCeEEEEEeCchHh
Confidence            56799999999999988776    3799999986               3578999999988765 57999999877666


Q ss_pred             C---CHHHHHHHHHHhcCcCcEEEE
Q 022592          202 I---NFPNYLQEAQRVLKPSGWLLI  223 (294)
Q Consensus       202 ~---~~~~~l~el~r~LkpgG~l~i  223 (294)
                      .   +....+.++.++|+|||.+++
T Consensus       237 ~~~e~~~~~l~~~~~~LkpgG~li~  261 (480)
T 3b3j_A          237 LFNERMLESYLHAKKYLKPSGNMFP  261 (480)
T ss_dssp             HTCHHHHHHHHHGGGGEEEEEEEES
T ss_pred             cCcHHHHHHHHHHHHhcCCCCEEEE
Confidence            3   345677788999999999985

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.02  E-value=6.8e-10  Score=98.56  Aligned_cols=111  Identities=11%  Similarity=0.124  Sum_probs=80.1

Q ss_pred             CCCCEEEEEcCcccHHHHHhc------cceEEEeccC---------------CCCcEEEccCCCCCC----CCCCccEEE
Q 022592          140 SPSLVIADFGCGDARLAKSVK------NKVFSFDLVS---------------NDPSVIACDMSNTPL----NSSSVDVAV  194 (294)
Q Consensus       140 ~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~---------------~~~~~~~~d~~~lp~----~~~~fD~Vi  194 (294)
                      .++.+|||+|||+|..+..++      ..|+|+|+++               .++.++.+|+..++.    ..++||+|+
T Consensus        82 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl  161 (274)
T 3ajd_A           82 REDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKIL  161 (274)
T ss_dssp             CTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             CCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEEE
Confidence            367899999999999887775      3799999997               267788888877654    257899999


Q ss_pred             EcccccC-------------------CCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHC-CCeEE
Q 022592          195 FCLSLMG-------------------INFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDL-GFAPV  254 (294)
Q Consensus       195 ~~~~l~~-------------------~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~-Gf~~~  254 (294)
                      +......                   .....++.++.++|+|||.|+++...-...     -+.+.+..++++. +|+++
T Consensus       162 ~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~~~~-----ene~~v~~~l~~~~~~~~~  236 (274)
T 3ajd_A          162 LDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSMEVE-----ENEEVIKYILQKRNDVELI  236 (274)
T ss_dssp             EEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCCCTT-----SSHHHHHHHHHHCSSEEEE
T ss_pred             EcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCChH-----HhHHHHHHHHHhCCCcEEe
Confidence            8633221                   234688999999999999999976432111     1345666777654 56655


Q ss_pred             E
Q 022592          255 S  255 (294)
Q Consensus       255 ~  255 (294)
                      .
T Consensus       237 ~  237 (274)
T 3ajd_A          237 I  237 (274)
T ss_dssp             C
T ss_pred             c
Confidence            4

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.00  E-value=5.1e-11  Score=116.47  Aligned_cols=87  Identities=15%  Similarity=0.230  Sum_probs=69.9

Q ss_pred             CCCEEEEEcCcccHHHHHhc---cceEEEeccCC---------------CCcEEEccCCCC--CCCCCCccEEEEccccc
Q 022592          141 PSLVIADFGCGDARLAKSVK---NKVFSFDLVSN---------------DPSVIACDMSNT--PLNSSSVDVAVFCLSLM  200 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~~---------------~~~~~~~d~~~l--p~~~~~fD~Vi~~~~l~  200 (294)
                      .+.+|||||||.|.++..++   ..|+|+|+|+.               ++.|.+++++++  ++.+++||+|+|..+|+
T Consensus        66 ~~~~vLDvGCG~G~~~~~la~~ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e~~e  145 (569)
T 4azs_A           66 RPLNVLDLGCAQGFFSLSLASKGATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLSVFH  145 (569)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEESCHH
T ss_pred             CCCeEEEECCCCcHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECcchh
Confidence            45699999999999999998   48999999971               467889998886  46678999999999999


Q ss_pred             CC-CHH--HHHHHHHHhcCcCcEEEEEeec
Q 022592          201 GI-NFP--NYLQEAQRVLKPSGWLLIAEVK  227 (294)
Q Consensus       201 ~~-~~~--~~l~el~r~LkpgG~l~i~e~~  227 (294)
                      |. ++.  ..+..+.+.|+++|..++..+.
T Consensus       146 hv~~~~~~~~~~~~~~tl~~~~~~~~~~~~  175 (569)
T 4azs_A          146 HIVHLHGIDEVKRLLSRLADVTQAVILELA  175 (569)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHHSSEEEEECC
T ss_pred             cCCCHHHHHHHHHHHHHhccccceeeEEec
Confidence            95 443  3345677788898887776543

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=98.99  E-value=3.3e-10  Score=98.04  Aligned_cols=96  Identities=14%  Similarity=0.168  Sum_probs=70.9

Q ss_pred             HHHHHHhhccCCCCEEEEEcCcccHHHHHhc------cceEEEeccC----------------CCCcEEEccCCC----C
Q 022592          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----------------NDPSVIACDMSN----T  183 (294)
Q Consensus       130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~----------------~~~~~~~~d~~~----l  183 (294)
                      ..++..+....++.+|||||||+|..+..++      ..|+++|+++                .++.++.+|+.+    +
T Consensus        61 ~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l  140 (232)
T 3cbg_A           61 AQFLGLLISLTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQL  140 (232)
T ss_dssp             HHHHHHHHHHHTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHH
Confidence            3344444333355699999999999988776      2799999997                246788888643    3


Q ss_pred             CCCC--CCccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEeec
Q 022592          184 PLNS--SSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVK  227 (294)
Q Consensus       184 p~~~--~~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e~~  227 (294)
                      +..+  ++||+|++...  ..+...++.++.++|+|||.|++.++.
T Consensus       141 ~~~~~~~~fD~V~~d~~--~~~~~~~l~~~~~~LkpgG~lv~~~~~  184 (232)
T 3cbg_A          141 TQGKPLPEFDLIFIDAD--KRNYPRYYEIGLNLLRRGGLMVIDNVL  184 (232)
T ss_dssp             HTSSSCCCEEEEEECSC--GGGHHHHHHHHHHTEEEEEEEEEECTT
T ss_pred             HhcCCCCCcCEEEECCC--HHHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            3333  78999998754  236678999999999999999997643

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=98.99  E-value=1.1e-09  Score=93.84  Aligned_cols=95  Identities=19%  Similarity=0.199  Sum_probs=71.2

Q ss_pred             HHHHHhhccCCCCEEEEEcCcccHHHHHhc------cceEEEeccC----------------CCCcEEEccCCCC-C-CC
Q 022592          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----------------NDPSVIACDMSNT-P-LN  186 (294)
Q Consensus       131 ~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~----------------~~~~~~~~d~~~l-p-~~  186 (294)
                      .++..+....++.+|||||||+|..+..++      .+|+++|+++                .++.++.+|+... + +.
T Consensus        59 ~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~  138 (229)
T 2avd_A           59 QLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELL  138 (229)
T ss_dssp             HHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHH
Confidence            344444443466799999999999988776      2799999997                2567888887543 1 21


Q ss_pred             C----CCccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEeec
Q 022592          187 S----SSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVK  227 (294)
Q Consensus       187 ~----~~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e~~  227 (294)
                      .    ++||+|++...  ..+...++.++.++|+|||.+++.++.
T Consensus       139 ~~~~~~~~D~v~~d~~--~~~~~~~l~~~~~~L~pgG~lv~~~~~  181 (229)
T 2avd_A          139 AAGEAGTFDVAVVDAD--KENCSAYYERCLQLLRPGGILAVLRVL  181 (229)
T ss_dssp             HTTCTTCEEEEEECSC--STTHHHHHHHHHHHEEEEEEEEEECCS
T ss_pred             hcCCCCCccEEEECCC--HHHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            1    68999998654  346778999999999999999997643

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=98.98  E-value=4.3e-09  Score=96.37  Aligned_cols=127  Identities=20%  Similarity=0.235  Sum_probs=89.9

Q ss_pred             CCCEEEEEcCcccHHHHHhc----------cceEEEeccC--------------CCCcEEEccCCCCCCCCCCccEEEEc
Q 022592          141 PSLVIADFGCGDARLAKSVK----------NKVFSFDLVS--------------NDPSVIACDMSNTPLNSSSVDVAVFC  196 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~----------~~v~gvD~s~--------------~~~~~~~~d~~~lp~~~~~fD~Vi~~  196 (294)
                      ++.+|||+|||+|.++..++          ..++|+|+++              .++.+..+|.... ...+.||+|+++
T Consensus       130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~-~~~~~fD~Ii~N  208 (344)
T 2f8l_A          130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLAN-LLVDPVDVVISD  208 (344)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSC-CCCCCEEEEEEE
T ss_pred             CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCc-cccCCccEEEEC
Confidence            45689999999999887664          3589999997              2467888887663 345789999999


Q ss_pred             ccccCC-C-----------------H-HHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEEe
Q 022592          197 LSLMGI-N-----------------F-PNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSKD  257 (294)
Q Consensus       197 ~~l~~~-~-----------------~-~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~  257 (294)
                      ..+.+. .                 . ..++..+.+.|+|||+++++...+.+...    ....+.+.|.+.|+....+.
T Consensus       209 PPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~~~~~~----~~~~ir~~l~~~~~~~~ii~  284 (344)
T 2f8l_A          209 LPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTS----DFAKVDKFIKKNGHIEGIIK  284 (344)
T ss_dssp             CCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGST----THHHHHHHHHHHEEEEEEEE
T ss_pred             CCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECchhcCCc----hHHHHHHHHHhCCeEEEeee
Confidence            776432 1                 1 26899999999999999998766544332    35788888888887442222


Q ss_pred             cc-------CCeEEEEEEEECC
Q 022592          258 FS-------NKMFIMFYFKKKE  272 (294)
Q Consensus       258 ~~-------~~~f~~i~~~k~~  272 (294)
                      ..       .....+++++|..
T Consensus       285 lp~~~F~~~~~~~~i~vl~k~~  306 (344)
T 2f8l_A          285 LPETLFKSEQARKSILILEKAD  306 (344)
T ss_dssp             CCGGGSCC-CCCEEEEEEEECC
T ss_pred             CChhhccCCCCceEEEEEECCC
Confidence            21       2234566677654

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=98.98  E-value=3.3e-09  Score=99.28  Aligned_cols=139  Identities=13%  Similarity=0.133  Sum_probs=93.6

Q ss_pred             cHHHHHHHHhhccCCCCEEEEEcCcccHHHHHhc------cceEEEeccCC------CCcEEEccCCCCCCCCCCccEEE
Q 022592          127 LPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVSN------DPSVIACDMSNTPLNSSSVDVAV  194 (294)
Q Consensus       127 ~~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~~------~~~~~~~d~~~lp~~~~~fD~Vi  194 (294)
                      ...+.+++.+... ++.+|||+|||+|.++..++      ..++|+|+++.      ++.++.+|+...+. .+.||+|+
T Consensus        26 ~l~~~~~~~~~~~-~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a~~~~~~~~D~~~~~~-~~~fD~Ii  103 (421)
T 2ih2_A           26 EVVDFMVSLAEAP-RGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPPWAEGILADFLLWEP-GEAFDLIL  103 (421)
T ss_dssp             HHHHHHHHHCCCC-TTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCTTEEEEESCGGGCCC-SSCEEEEE
T ss_pred             HHHHHHHHhhccC-CCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhCCCCcEEeCChhhcCc-cCCCCEEE
Confidence            3345566665432 45699999999999988776      37999999984      45688899887653 46899999


Q ss_pred             EcccccC----------CC--------------------HHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHH
Q 022592          195 FCLSLMG----------IN--------------------FPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSK  244 (294)
Q Consensus       195 ~~~~l~~----------~~--------------------~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~  244 (294)
                      ++..+..          .+                    ...++..+.++|+|||.++++.....+...    ....+.+
T Consensus       104 ~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~~l~~~----~~~~lr~  179 (421)
T 2ih2_A          104 GNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLE----DFALLRE  179 (421)
T ss_dssp             ECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTCG----GGHHHHH
T ss_pred             ECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChHHhcCc----cHHHHHH
Confidence            9644421          10                    126688999999999999998655433221    3367888


Q ss_pred             HHHHCCCe-EEEEe----ccCCeEEEEEEEEC
Q 022592          245 AVCDLGFA-PVSKD----FSNKMFIMFYFKKK  271 (294)
Q Consensus       245 ~l~~~Gf~-~~~~~----~~~~~f~~i~~~k~  271 (294)
                      .+.+.|+. ++...    .......+++++|.
T Consensus       180 ~l~~~~~~~i~~l~~~F~~~~~~~~il~~~k~  211 (421)
T 2ih2_A          180 FLAREGKTSVYYLGEVFPQKKVSAVVIRFQKS  211 (421)
T ss_dssp             HHHHHSEEEEEEEESCSTTCCCCEEEEEEESS
T ss_pred             HHHhcCCeEEEECCCCCCCCCccEEEEEEEeC
Confidence            88888872 22221    12233456666664

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=98.97  E-value=5.6e-09  Score=92.93  Aligned_cols=110  Identities=13%  Similarity=0.156  Sum_probs=83.2

Q ss_pred             CCCCEEEEEcCcccHHHHHhc----cceEEEeccC----------------CCCcEEEccCCCCCCCCCCccEEEEcccc
Q 022592          140 SPSLVIADFGCGDARLAKSVK----NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSVDVAVFCLSL  199 (294)
Q Consensus       140 ~~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~----------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l  199 (294)
                      .++.+|||+|||+|.++..++    .+|+++|+++                +++.++.+|+..++. .+.||.|++... 
T Consensus       124 ~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~-~~~~D~Vi~~~p-  201 (278)
T 3k6r_A          124 KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGYV-  201 (278)
T ss_dssp             CTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECCC-
T ss_pred             CCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhcc-ccCCCEEEECCC-
Confidence            367899999999999988775    4899999998                356788999988764 578999997643 


Q ss_pred             cCCCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEE
Q 022592          200 MGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVS  255 (294)
Q Consensus       200 ~~~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~  255 (294)
                        .....++..+.++|+|||++.+.++......  .....+.+..++...|+.+..
T Consensus       202 --~~~~~~l~~a~~~lk~gG~ih~~~~~~e~~~--~~~~~e~i~~~~~~~g~~v~~  253 (278)
T 3k6r_A          202 --VRTHEFIPKALSIAKDGAIIHYHNTVPEKLM--PREPFETFKRITKEYGYDVEK  253 (278)
T ss_dssp             --SSGGGGHHHHHHHEEEEEEEEEEEEEEGGGT--TTTTHHHHHHHHHHTTCEEEE
T ss_pred             --CcHHHHHHHHHHHcCCCCEEEEEeeeccccc--chhHHHHHHHHHHHcCCcEEE
Confidence              2334678888999999999988765432211  112457788889999998754

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=98.96  E-value=1.6e-09  Score=96.39  Aligned_cols=126  Identities=13%  Similarity=0.072  Sum_probs=85.7

Q ss_pred             CCCEEEEEcCcccHHHHHhc-----cceEEEeccC-------------------CCCcEEEccCCC-CCCCCCCccEEEE
Q 022592          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS-------------------NDPSVIACDMSN-TPLNSSSVDVAVF  195 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~-------------------~~~~~~~~d~~~-lp~~~~~fD~Vi~  195 (294)
                      .+.+|||||||+|.++..++     .+|+++|+++                   +++.++.+|+.. ++...++||+|++
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~  154 (275)
T 1iy9_A           75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV  154 (275)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred             CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEE
Confidence            45699999999999998886     3799999985                   256788888765 3444678999999


Q ss_pred             cccccCC-----CHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEEec------cCCeEE
Q 022592          196 CLSLMGI-----NFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSKDF------SNKMFI  264 (294)
Q Consensus       196 ~~~l~~~-----~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~------~~~~f~  264 (294)
                      .....+.     ....+++++.++|+|||.+++........    ......+.+.+++. |..+....      ....+.
T Consensus       155 d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~~~~~----~~~~~~~~~~l~~~-F~~v~~~~~~vp~~~~g~w~  229 (275)
T 1iy9_A          155 DSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFT----PELITNVQRDVKEI-FPITKLYTANIPTYPSGLWT  229 (275)
T ss_dssp             SCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTTTC----HHHHHHHHHHHHTT-CSEEEEEEECCTTSGGGCEE
T ss_pred             CCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccc----HHHHHHHHHHHHHh-CCCeEEEEEecCcccCcceE
Confidence            6554321     13689999999999999998863221110    11234556667776 66555321      124567


Q ss_pred             EEEEEEC
Q 022592          265 MFYFKKK  271 (294)
Q Consensus       265 ~i~~~k~  271 (294)
                      ++++.|.
T Consensus       230 ~~~ask~  236 (275)
T 1iy9_A          230 FTIGSKK  236 (275)
T ss_dssp             EEEEESS
T ss_pred             EEEeeCC
Confidence            7777664

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=98.96  E-value=7.8e-10  Score=95.82  Aligned_cols=93  Identities=22%  Similarity=0.265  Sum_probs=68.7

Q ss_pred             HHHHhhccCCCCEEEEEcCcccHHHHHhc------cceEEEeccC----------------CCCcEEEccCCC-CC----
Q 022592          132 IVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----------------NDPSVIACDMSN-TP----  184 (294)
Q Consensus       132 ~~~~l~~~~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~----------------~~~~~~~~d~~~-lp----  184 (294)
                      ++..+....++.+|||||||+|..+..++      ..|+++|+++                .++.++.+|+.. ++    
T Consensus        51 ~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~  130 (239)
T 2hnk_A           51 FLNILTKISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLID  130 (239)
T ss_dssp             HHHHHHHHHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHH
T ss_pred             HHHHHHHhhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHh
Confidence            33333333356799999999999888775      3799999987                136788888754 22    


Q ss_pred             ----------CCC--CCccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEee
Q 022592          185 ----------LNS--SSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEV  226 (294)
Q Consensus       185 ----------~~~--~~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e~  226 (294)
                                +++  ++||+|++....  .+...++.++.++|+|||++++.++
T Consensus       131 ~~~~~~~~~~f~~~~~~fD~I~~~~~~--~~~~~~l~~~~~~L~pgG~lv~~~~  182 (239)
T 2hnk_A          131 SKSAPSWASDFAFGPSSIDLFFLDADK--ENYPNYYPLILKLLKPGGLLIADNV  182 (239)
T ss_dssp             CSSCCGGGTTTCCSTTCEEEEEECSCG--GGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred             hcccccccccccCCCCCcCEEEEeCCH--HHHHHHHHHHHHHcCCCeEEEEEcc
Confidence                      222  789999987543  2566899999999999999999764

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=98.95  E-value=8e-09  Score=87.01  Aligned_cols=103  Identities=17%  Similarity=0.201  Sum_probs=77.1

Q ss_pred             CCCEEEEEcCcccHHHHHhc----cceEEEeccCC--------------CCcEEEccCCCCCCCCCCccEEEEcccccCC
Q 022592          141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVSN--------------DPSVIACDMSNTPLNSSSVDVAVFCLSLMGI  202 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~~--------------~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~  202 (294)
                      ++.+|||+|||+|.++..++    ..|+|+|+++.              ++.++.+|+..++   ++||+|+++..+++.
T Consensus        49 ~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~---~~~D~v~~~~p~~~~  125 (207)
T 1wy7_A           49 EGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFN---SRVDIVIMNPPFGSQ  125 (207)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCC---CCCSEEEECCCCSSS
T ss_pred             CcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHHcC---CCCCEEEEcCCCccc
Confidence            56799999999999988886    36999999971              5788999998865   479999999887763


Q ss_pred             ---CHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEE
Q 022592          203 ---NFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSK  256 (294)
Q Consensus       203 ---~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~  256 (294)
                         ....++.++.++|  || +++..+...       -+.+.+.+.+.+.||++...
T Consensus       126 ~~~~~~~~l~~~~~~l--~~-~~~~~~~~~-------~~~~~~~~~l~~~g~~~~~~  172 (207)
T 1wy7_A          126 RKHADRPFLLKAFEIS--DV-VYSIHLAKP-------EVRRFIEKFSWEHGFVVTHR  172 (207)
T ss_dssp             STTTTHHHHHHHHHHC--SE-EEEEEECCH-------HHHHHHHHHHHHTTEEEEEE
T ss_pred             cCCchHHHHHHHHHhc--Cc-EEEEEeCCc-------CCHHHHHHHHHHCCCeEEEE
Confidence               3457889999998  55 444332111       12356778889999987653

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=98.94  E-value=2.2e-09  Score=96.47  Aligned_cols=126  Identities=12%  Similarity=0.092  Sum_probs=83.0

Q ss_pred             CCCEEEEEcCcccHHHHHhc-----cceEEEeccC-------------------CCCcEEEccCCC-CCCCCCCccEEEE
Q 022592          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS-------------------NDPSVIACDMSN-TPLNSSSVDVAVF  195 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~-------------------~~~~~~~~d~~~-lp~~~~~fD~Vi~  195 (294)
                      .+.+|||||||+|.++..++     .+|+++|+++                   +++.++.+|+.. ++...++||+|++
T Consensus        90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~  169 (296)
T 1inl_A           90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII  169 (296)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred             CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEE
Confidence            44699999999999998886     3799999986                   246778888755 3444678999998


Q ss_pred             cccccCC------CHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEEec------cCCeE
Q 022592          196 CLSLMGI------NFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSKDF------SNKMF  263 (294)
Q Consensus       196 ~~~l~~~------~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~------~~~~f  263 (294)
                      .....+.      ....+++++.++|+|||.+++........    ......+.+.+.+. |..+....      ....+
T Consensus       170 d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~----~~~~~~~~~~l~~~-F~~v~~~~~~vp~~p~g~~  244 (296)
T 1inl_A          170 DSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPFYD----IGWFKLAYRRISKV-FPITRVYLGFMTTYPSGMW  244 (296)
T ss_dssp             EC----------CCSHHHHHHHHHHEEEEEEEEEECCCTTTT----HHHHHHHHHHHHHH-CSEEEEEEEECTTSTTSEE
T ss_pred             cCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEccCcccC----HHHHHHHHHHHHHH-CCceEEEEeecCccCCCce
Confidence            6443211      23689999999999999999963221111    01224555666666 55544221      13567


Q ss_pred             EEEEEEEC
Q 022592          264 IMFYFKKK  271 (294)
Q Consensus       264 ~~i~~~k~  271 (294)
                      .++.+.|.
T Consensus       245 ~f~~as~~  252 (296)
T 1inl_A          245 SYTFASKG  252 (296)
T ss_dssp             EEEEEESS
T ss_pred             EEEEecCC
Confidence            77777654

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=98.94  E-value=5.2e-09  Score=98.75  Aligned_cols=117  Identities=13%  Similarity=0.112  Sum_probs=82.7

Q ss_pred             HHHHhhccCCCCEEEEEcCcccHHHHHhc-----cceEEEeccCC--------------CCcEEEccCCCCC--CCCCCc
Q 022592          132 IVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVSN--------------DPSVIACDMSNTP--LNSSSV  190 (294)
Q Consensus       132 ~~~~l~~~~~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~~--------------~~~~~~~d~~~lp--~~~~~f  190 (294)
                      +...+.. .++.+|||+|||+|..+..++     ..|+|+|+++.              ++.++.+|+..++  +++++|
T Consensus       238 ~~~~l~~-~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~f  316 (429)
T 1sqg_A          238 CMTWLAP-QNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQF  316 (429)
T ss_dssp             HHHHHCC-CTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCE
T ss_pred             HHHHcCC-CCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCC
Confidence            3344433 477899999999999888776     38999999983              4678888998876  556789


Q ss_pred             cEEEEcc------cccC-CCH----------------HHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHH
Q 022592          191 DVAVFCL------SLMG-INF----------------PNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVC  247 (294)
Q Consensus       191 D~Vi~~~------~l~~-~~~----------------~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~  247 (294)
                      |+|++..      ++.+ .+.                ..++.++.++|+|||.|++++..-...     -+...+..+++
T Consensus       317 D~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~~~-----ene~~v~~~l~  391 (429)
T 1sqg_A          317 DRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPE-----ENSLQIKAFLQ  391 (429)
T ss_dssp             EEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGG-----GTHHHHHHHHH
T ss_pred             CEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChh-----hHHHHHHHHHH
Confidence            9999632      2222 221                478999999999999999986432111     13456677777


Q ss_pred             HC-CCeEE
Q 022592          248 DL-GFAPV  254 (294)
Q Consensus       248 ~~-Gf~~~  254 (294)
                      +. +|+++
T Consensus       392 ~~~~~~~~  399 (429)
T 1sqg_A          392 RTADAELC  399 (429)
T ss_dssp             HCTTCEEC
T ss_pred             hCCCCEEe
Confidence            76 57654

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=98.93  E-value=5.4e-09  Score=95.56  Aligned_cols=99  Identities=12%  Similarity=0.138  Sum_probs=78.3

Q ss_pred             CCCEEEEEcCcccHHHHHhc---cceEEEeccC----------------CCCcEEEccCCCCCCCCCCccEEEEcccccC
Q 022592          141 PSLVIADFGCGDARLAKSVK---NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMG  201 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~----------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~  201 (294)
                      ++.+|||+|||+|.++.. +   ..|+|+|+|+                .++.++.+|+....   ++||+|++....  
T Consensus       195 ~~~~VLDlg~G~G~~~l~-a~~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~---~~fD~Vi~dpP~--  268 (336)
T 2yx1_A          195 LNDVVVDMFAGVGPFSIA-CKNAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD---VKGNRVIMNLPK--  268 (336)
T ss_dssp             TTCEEEETTCTTSHHHHH-TTTSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC---CCEEEEEECCTT--
T ss_pred             CCCEEEEccCccCHHHHh-ccCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc---CCCcEEEECCcH--
Confidence            677999999999999988 7   3899999997                35789999998765   789999986321  


Q ss_pred             CCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHC-CCeEEE
Q 022592          202 INFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDL-GFAPVS  255 (294)
Q Consensus       202 ~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~-Gf~~~~  255 (294)
                       ....++..+.++|+|||.+++.++...         .+.+.+.+.++ ||++..
T Consensus       269 -~~~~~l~~~~~~L~~gG~l~~~~~~~~---------~~~~~~~l~~~~~~~i~~  313 (336)
T 2yx1_A          269 -FAHKFIDKALDIVEEGGVIHYYTIGKD---------FDKAIKLFEKKCDCEVLE  313 (336)
T ss_dssp             -TGGGGHHHHHHHEEEEEEEEEEEEESS---------SHHHHHHHHHHSEEEEEE
T ss_pred             -hHHHHHHHHHHHcCCCCEEEEEEeecC---------chHHHHHHHHhcCCcEEE
Confidence             123788999999999999999877654         25666677776 777654

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=98.92  E-value=5.4e-09  Score=95.02  Aligned_cols=126  Identities=14%  Similarity=0.095  Sum_probs=82.8

Q ss_pred             CCCEEEEEcCcccHHHHHhc-----cceEEEeccC-------------------CCCcEEEccCCC-CCCCCCCccEEEE
Q 022592          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS-------------------NDPSVIACDMSN-TPLNSSSVDVAVF  195 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~-------------------~~~~~~~~d~~~-lp~~~~~fD~Vi~  195 (294)
                      .+.+|||||||+|.++..++     .+|+++|+++                   ++++++.+|+.. ++..+++||+|++
T Consensus       116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi~  195 (321)
T 2pt6_A          116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIV  195 (321)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEE
T ss_pred             CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEEE
Confidence            45699999999999999886     3799999986                   246678888755 3333578999998


Q ss_pred             cccccC-C--C--HHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEEec------cCCeEE
Q 022592          196 CLSLMG-I--N--FPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSKDF------SNKMFI  264 (294)
Q Consensus       196 ~~~l~~-~--~--~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~------~~~~f~  264 (294)
                      ...... .  .  ...+++++.++|+|||++++........    ......+.+.+++. |..+....      ....+.
T Consensus       196 d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~----~~~~~~~~~~l~~~-F~~v~~~~~~vp~~~~g~w~  270 (321)
T 2pt6_A          196 DSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESLWIH----VGTIKNMIGYAKKL-FKKVEYANISIPTYPCGCIG  270 (321)
T ss_dssp             ECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEECCTTTC----HHHHHHHHHHHHTT-CSEEEEEEEECTTSGGGEEE
T ss_pred             CCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccC----HHHHHHHHHHHHHH-CCCeEEEEEEeccccCceEE
Confidence            653221 1  1  1789999999999999999853222111    01223455556665 55554221      123566


Q ss_pred             EEEEEEC
Q 022592          265 MFYFKKK  271 (294)
Q Consensus       265 ~i~~~k~  271 (294)
                      ++.+.+.
T Consensus       271 f~~as~~  277 (321)
T 2pt6_A          271 ILCCSKT  277 (321)
T ss_dssp             EEEEESS
T ss_pred             EEEeeCC
Confidence            6666654

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=98.92  E-value=2.7e-09  Score=96.69  Aligned_cols=126  Identities=13%  Similarity=0.037  Sum_probs=85.9

Q ss_pred             CCCEEEEEcCcccHHHHHhc-----cceEEEeccC--------------------CCCcEEEccCCC-CCCCCCCccEEE
Q 022592          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS--------------------NDPSVIACDMSN-TPLNSSSVDVAV  194 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~--------------------~~~~~~~~d~~~-lp~~~~~fD~Vi  194 (294)
                      .+.+|||||||+|.++..++     .+|+++|+++                    +++.++.+|+.. ++..+++||+|+
T Consensus        77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii  156 (314)
T 1uir_A           77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVI  156 (314)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEE
T ss_pred             CCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEEE
Confidence            45699999999999999886     2799999985                    245678888765 344467899999


Q ss_pred             EcccccC---CC-----HHHHHHHHHHhcCcCcEEEEEeecCC-CCCCCCCCCHHHHHHHHHHCCCeEEEEe-----ccC
Q 022592          195 FCLSLMG---IN-----FPNYLQEAQRVLKPSGWLLIAEVKSR-FDPNTGGADPNKFSKAVCDLGFAPVSKD-----FSN  260 (294)
Q Consensus       195 ~~~~l~~---~~-----~~~~l~el~r~LkpgG~l~i~e~~~~-~~~~~~~~~~~~~~~~l~~~Gf~~~~~~-----~~~  260 (294)
                      +....++   ..     ...+++++.++|+|||.+++...... ..    .-....+.+.++.. |..+...     ...
T Consensus       157 ~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~----~~~~~~~~~~l~~~-F~~v~~~~~~vP~~~  231 (314)
T 1uir_A          157 IDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTH----HRVHPVVHRTVREA-FRYVRSYKNHIPGFF  231 (314)
T ss_dssp             EECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC-------CHHHHHHHHHHTT-CSEEEEEEEEEGGGT
T ss_pred             ECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEccCccccC----HHHHHHHHHHHHHH-CCceEEEEEecCCCC
Confidence            9876644   11     36899999999999999998632221 11    11335666777766 5544422     113


Q ss_pred             CeEEEEEEEEC
Q 022592          261 KMFIMFYFKKK  271 (294)
Q Consensus       261 ~~f~~i~~~k~  271 (294)
                      ..+.++.+.|.
T Consensus       232 g~~~~~~as~~  242 (314)
T 1uir_A          232 LNFGFLLASDA  242 (314)
T ss_dssp             EEEEEEEEESS
T ss_pred             CeEEEEEEECC
Confidence            35666666654

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=98.87  E-value=2.6e-09  Score=96.74  Aligned_cols=123  Identities=15%  Similarity=0.136  Sum_probs=82.5

Q ss_pred             CEEEEEcCcccHHHHHhcc-----ceEEEeccC---------------CCCcEEEccCCCC--CCCCCCccEEEEccccc
Q 022592          143 LVIADFGCGDARLAKSVKN-----KVFSFDLVS---------------NDPSVIACDMSNT--PLNSSSVDVAVFCLSLM  200 (294)
Q Consensus       143 ~~VLDiGcG~G~~~~~l~~-----~v~gvD~s~---------------~~~~~~~~d~~~l--p~~~~~fD~Vi~~~~l~  200 (294)
                      .+|||||||+|.++..++.     ++++||+++               .++.++.+|+...  .+++++||+|++.....
T Consensus        91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~~  170 (317)
T 3gjy_A           91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFAG  170 (317)
T ss_dssp             CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCSTT
T ss_pred             CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCCc
Confidence            4999999999999988762     789999987               3578889998663  24567899999865443


Q ss_pred             CC-----CHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEEec-------cCCeEEEEEE
Q 022592          201 GI-----NFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSKDF-------SNKMFIMFYF  268 (294)
Q Consensus       201 ~~-----~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~-------~~~~f~~i~~  268 (294)
                      ..     ....+++++.++|+|||+|++......     .......+...|.+. |..+....       ....+.++++
T Consensus       171 ~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~~~~-----~~~~~~~~~~tL~~v-F~~v~~~~~~~~~~g~~~gN~Vl~A  244 (317)
T 3gjy_A          171 AITPQNFTTVEFFEHCHRGLAPGGLYVANCGDHS-----DLRGAKSELAGMMEV-FEHVAVIADPPMLKGRRYGNIILMG  244 (317)
T ss_dssp             SCCCGGGSBHHHHHHHHHHEEEEEEEEEEEEECT-----TCHHHHHHHHHHHHH-CSEEEEEECHHHHTTSSCEEEEEEE
T ss_pred             cccchhhhHHHHHHHHHHhcCCCcEEEEEecCCc-----chHHHHHHHHHHHHH-CCceEEEEecCCCCCCcCceEEEEE
Confidence            31     236899999999999999988653211     000123445555554 54444321       1334566666


Q ss_pred             EEC
Q 022592          269 KKK  271 (294)
Q Consensus       269 ~k~  271 (294)
                      .+.
T Consensus       245 s~~  247 (317)
T 3gjy_A          245 SDT  247 (317)
T ss_dssp             ESS
T ss_pred             ECC
Confidence            554

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=98.87  E-value=2.4e-09  Score=101.66  Aligned_cols=111  Identities=14%  Similarity=0.090  Sum_probs=80.4

Q ss_pred             CCCCEEEEEcCcccHHHHHhc------cceEEEeccC---------------CCCcEEEccCCCCC-CCCCCccEEEEcc
Q 022592          140 SPSLVIADFGCGDARLAKSVK------NKVFSFDLVS---------------NDPSVIACDMSNTP-LNSSSVDVAVFCL  197 (294)
Q Consensus       140 ~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~---------------~~~~~~~~d~~~lp-~~~~~fD~Vi~~~  197 (294)
                      .++.+|||+|||+|..+..++      ..|+++|+++               .++.++.+|+..++ ..+++||+|++..
T Consensus       104 ~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~Il~Da  183 (456)
T 3m4x_A          104 KPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVVDA  183 (456)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCEEEEEEEC
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccccCCEEEECC
Confidence            477899999999999887775      3799999997               35677778877654 2357899999754


Q ss_pred             cccC-----CCH------------------HHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEE
Q 022592          198 SLMG-----INF------------------PNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPV  254 (294)
Q Consensus       198 ~l~~-----~~~------------------~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~  254 (294)
                      ....     .++                  ..+|.++.++|||||.|+++...-...     -+.+.+..++++.||+++
T Consensus       184 PCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~e-----Ene~vv~~~l~~~~~~l~  258 (456)
T 3m4x_A          184 PCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFAPE-----ENEEIISWLVENYPVTIE  258 (456)
T ss_dssp             CCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCCGG-----GTHHHHHHHHHHSSEEEE
T ss_pred             CCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeecccc-----cCHHHHHHHHHhCCCEEE
Confidence            3110     111                  267999999999999999876432211     245677888898887776


Q ss_pred             E
Q 022592          255 S  255 (294)
Q Consensus       255 ~  255 (294)
                      .
T Consensus       259 ~  259 (456)
T 3m4x_A          259 E  259 (456)
T ss_dssp             C
T ss_pred             e
Confidence            5

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=98.86  E-value=1.2e-08  Score=90.18  Aligned_cols=119  Identities=10%  Similarity=-0.039  Sum_probs=80.6

Q ss_pred             CCCEEEEEcCcccHHHHHhc---cceEEEeccC-------------------CCCcEEEccCCCCCCCCCCccEEEEccc
Q 022592          141 PSLVIADFGCGDARLAKSVK---NKVFSFDLVS-------------------NDPSVIACDMSNTPLNSSSVDVAVFCLS  198 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~-------------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~  198 (294)
                      .+.+|||||||+|.++..++   .+|+++|+++                   +++.++.+|.....   ++||+|++.. 
T Consensus        72 ~~~~VL~iG~G~G~~~~~ll~~~~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---~~fD~Ii~d~-  147 (262)
T 2cmg_A           72 ELKEVLIVDGFDLELAHQLFKYDTHIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---KKYDLIFCLQ-  147 (262)
T ss_dssp             CCCEEEEESSCCHHHHHHHTTSSCEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC---CCEEEEEESS-
T ss_pred             CCCEEEEEeCCcCHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH---hhCCEEEECC-
Confidence            34699999999999998776   4799999986                   13567777776654   7899999863 


Q ss_pred             ccCCCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEEecc----CCeEEEEEEEEC
Q 022592          199 LMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSKDFS----NKMFIMFYFKKK  271 (294)
Q Consensus       199 l~~~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~----~~~f~~i~~~k~  271 (294)
                         .++..+++.+.++|+|||.+++..-.....    ......+.+.+... |..+.....    ...+.++.+.|.
T Consensus       148 ---~dp~~~~~~~~~~L~pgG~lv~~~~~~~~~----~~~~~~~~~~l~~~-F~~~~~~~~~vP~~g~~~~~~as~~  216 (262)
T 2cmg_A          148 ---EPDIHRIDGLKRMLKEDGVFISVAKHPLLE----HVSMQNALKNMGGV-FSVAMPFVAPLRILSNKGYIYASFK  216 (262)
T ss_dssp             ---CCCHHHHHHHHTTEEEEEEEEEEEECTTTC----HHHHHHHHHHHHTT-CSEEEEECCTTCTTCCEEEEEEESS
T ss_pred             ---CChHHHHHHHHHhcCCCcEEEEEcCCcccC----HHHHHHHHHHHHHh-CCceEEEEEccCCCcccEEEEeeCC
Confidence               356679999999999999999853221111    00123344445544 766654432    345556566654

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=98.86  E-value=7.7e-09  Score=98.90  Aligned_cols=105  Identities=8%  Similarity=0.063  Sum_probs=75.6

Q ss_pred             CCCEEEEEcCcccHHHHHhc------cceEEEeccC---------------CCCcEEEccCCCCCC-CCCCccEEEEcc-
Q 022592          141 PSLVIADFGCGDARLAKSVK------NKVFSFDLVS---------------NDPSVIACDMSNTPL-NSSSVDVAVFCL-  197 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~---------------~~~~~~~~d~~~lp~-~~~~fD~Vi~~~-  197 (294)
                      ++.+|||+|||+|..+..++      ..|+++|+++               .++.++.+|+..++. .+++||+|++.. 
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~P  196 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAP  196 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEECC
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEECCC
Confidence            67799999999999887775      3799999997               357788899888653 457899999831 


Q ss_pred             -----cccC-CC----------------HHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCC
Q 022592          198 -----SLMG-IN----------------FPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLG  250 (294)
Q Consensus       198 -----~l~~-~~----------------~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~G  250 (294)
                           ++.+ .+                ...+|.++.++|||||.|+++...-...     -+.+.+..++++.+
T Consensus       197 cSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~~~~-----Ene~vv~~~l~~~~  266 (479)
T 2frx_A          197 CSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNQE-----ENEAVCLWLKETYP  266 (479)
T ss_dssp             CCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCSST-----TTHHHHHHHHHHST
T ss_pred             cCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccCCcc-----cCHHHHHHHHHHCC
Confidence                 2221 11                1368999999999999999976432211     13455666677665

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=98.86  E-value=1.2e-09  Score=94.80  Aligned_cols=95  Identities=13%  Similarity=0.138  Sum_probs=70.9

Q ss_pred             HHHHHHhhccCCCCEEEEEcCcccHHHHHhc------cceEEEeccC----------------CCCcEEEccCCCC-C-C
Q 022592          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----------------NDPSVIACDMSNT-P-L  185 (294)
Q Consensus       130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~----------------~~~~~~~~d~~~l-p-~  185 (294)
                      ..++..+....++.+|||||||+|..+..++      .+++++|+++                +++.++.+|+... + +
T Consensus        59 ~~~l~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l  138 (237)
T 3c3y_A           59 GQLMSFVLKLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNL  138 (237)
T ss_dssp             HHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHH
T ss_pred             HHHHHHHHHhhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHH
Confidence            3455554444456799999999999888775      3899999987                2467888887653 2 2


Q ss_pred             -----CCCCccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEee
Q 022592          186 -----NSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEV  226 (294)
Q Consensus       186 -----~~~~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e~  226 (294)
                           +.++||+|++...  ..+...+++.+.++|+|||.+++.+.
T Consensus       139 ~~~~~~~~~fD~I~~d~~--~~~~~~~l~~~~~~L~pGG~lv~d~~  182 (237)
T 3c3y_A          139 LQGQESEGSYDFGFVDAD--KPNYIKYHERLMKLVKVGGIVAYDNT  182 (237)
T ss_dssp             HHSTTCTTCEEEEEECSC--GGGHHHHHHHHHHHEEEEEEEEEECT
T ss_pred             HhccCCCCCcCEEEECCc--hHHHHHHHHHHHHhcCCCeEEEEecC
Confidence                 2578999997643  23567899999999999999988653

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=98.85  E-value=2.1e-09  Score=98.23  Aligned_cols=84  Identities=15%  Similarity=0.153  Sum_probs=65.8

Q ss_pred             CCCEEEEEcCcccHHHHHhc-----cceEEEeccC-------------------CCCcEEEccCCCC-C-CCCCCccEEE
Q 022592          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS-------------------NDPSVIACDMSNT-P-LNSSSVDVAV  194 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~-------------------~~~~~~~~d~~~l-p-~~~~~fD~Vi  194 (294)
                      ...+|||||||+|.++..++     .+|+++|+++                   .++.++.+|+... + +++++||+|+
T Consensus       120 ~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlIi  199 (334)
T 1xj5_A          120 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVI  199 (334)
T ss_dssp             CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEE
T ss_pred             CCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEEE
Confidence            45699999999999999887     3799999986                   2567888887653 2 3457899999


Q ss_pred             EcccccC--CC---HHHHHHHHHHhcCcCcEEEEE
Q 022592          195 FCLSLMG--IN---FPNYLQEAQRVLKPSGWLLIA  224 (294)
Q Consensus       195 ~~~~l~~--~~---~~~~l~el~r~LkpgG~l~i~  224 (294)
                      +.....+  .+   ...+++++.++|+|||+|++.
T Consensus       200 ~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~  234 (334)
T 1xj5_A          200 VDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ  234 (334)
T ss_dssp             ECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred             ECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence            8654222  11   478999999999999999985

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=98.84  E-value=2.3e-09  Score=95.76  Aligned_cols=92  Identities=24%  Similarity=0.240  Sum_probs=66.6

Q ss_pred             HHHHHHHHhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccC----------------CCCcEEEccCCCCCCCCC
Q 022592          128 PVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS----------------NDPSVIACDMSNTPLNSS  188 (294)
Q Consensus       128 ~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~----------------~~~~~~~~d~~~lp~~~~  188 (294)
                      .++.+++.+... ++.+|||||||+|.++..++   ..|+|+|+++                .++.++.+|+..++++  
T Consensus        16 i~~~i~~~~~~~-~~~~VLDiG~G~G~lt~~L~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~--   92 (285)
T 1zq9_A           16 IINSIIDKAALR-PTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP--   92 (285)
T ss_dssp             HHHHHHHHTCCC-TTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC--
T ss_pred             HHHHHHHhcCCC-CCCEEEEEcCcccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccch--
Confidence            345566666544 66799999999999999887   4899999986                1467899999888765  


Q ss_pred             CccEEEEcccccCCCH--HHHH--------------HHH--HHhcCcCcEEE
Q 022592          189 SVDVAVFCLSLMGINF--PNYL--------------QEA--QRVLKPSGWLL  222 (294)
Q Consensus       189 ~fD~Vi~~~~l~~~~~--~~~l--------------~el--~r~LkpgG~l~  222 (294)
                      +||+|+++..+++..+  ..++              +|+  .++|+|||.++
T Consensus        93 ~fD~vv~nlpy~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y  144 (285)
T 1zq9_A           93 FFDTCVANLPYQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY  144 (285)
T ss_dssp             CCSEEEEECCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred             hhcEEEEecCcccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence            7999999766554211  1222              233  36899999764

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=98.84  E-value=4e-09  Score=100.31  Aligned_cols=111  Identities=10%  Similarity=0.091  Sum_probs=79.1

Q ss_pred             CCCCEEEEEcCcccHHHHHhc------cceEEEeccCC--------------CCcEEEccCCCCC-CCCCCccEEEEccc
Q 022592          140 SPSLVIADFGCGDARLAKSVK------NKVFSFDLVSN--------------DPSVIACDMSNTP-LNSSSVDVAVFCLS  198 (294)
Q Consensus       140 ~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~~--------------~~~~~~~d~~~lp-~~~~~fD~Vi~~~~  198 (294)
                      .++.+|||+|||+|..+..++      ..|+|+|+++.              .+.++.+|+..++ ...++||+|++...
T Consensus       100 ~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~v~~~~~Da~~l~~~~~~~FD~Il~D~P  179 (464)
T 3m6w_A          100 KPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAPLAVTQAPPRALAEAFGTYFHRVLLDAP  179 (464)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCCCEEECSCHHHHHHHHCSCEEEEEEECC
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCeEEEEECCHHHhhhhccccCCEEEECCC
Confidence            377899999999999888776      37999999971              2677788877665 24578999996322


Q ss_pred             ------ccC-CC----------------HHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHC-CCeEE
Q 022592          199 ------LMG-IN----------------FPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDL-GFAPV  254 (294)
Q Consensus       199 ------l~~-~~----------------~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~-Gf~~~  254 (294)
                            +.. .+                ...++.++.++|||||.|+++...-...     -+.+.+..++++. +|+++
T Consensus       180 cSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~~e-----Ene~vv~~~l~~~~~~~l~  254 (464)
T 3m6w_A          180 CSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFAPE-----ENEGVVAHFLKAHPEFRLE  254 (464)
T ss_dssp             CCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGG-----GTHHHHHHHHHHCTTEEEE
T ss_pred             cCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccCchh-----cCHHHHHHHHHHCCCcEEE
Confidence                  211 11                1678999999999999999875432111     1446677777777 57665


Q ss_pred             E
Q 022592          255 S  255 (294)
Q Consensus       255 ~  255 (294)
                      .
T Consensus       255 ~  255 (464)
T 3m6w_A          255 D  255 (464)
T ss_dssp             C
T ss_pred             e
Confidence            4

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.82  E-value=5.2e-09  Score=104.55  Aligned_cols=106  Identities=11%  Similarity=0.145  Sum_probs=79.3

Q ss_pred             CCCEEEEEcCcccHHHHHhc----cceEEEeccC---------------C--CCcEEEccCCC-CCCCCCCccEEEEccc
Q 022592          141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVS---------------N--DPSVIACDMSN-TPLNSSSVDVAVFCLS  198 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~---------------~--~~~~~~~d~~~-lp~~~~~fD~Vi~~~~  198 (294)
                      ++.+|||+|||+|.++..++    ..|+++|+|+               .  ++.++++|+.. ++...++||+|++...
T Consensus       539 ~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DPP  618 (703)
T 3v97_A          539 KGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDPP  618 (703)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECCC
T ss_pred             CCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECCc
Confidence            67799999999999998876    3699999997               1  47789999876 4444678999998654


Q ss_pred             cc-----------C-CCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEE
Q 022592          199 LM-----------G-INFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVS  255 (294)
Q Consensus       199 l~-----------~-~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~  255 (294)
                      ..           + .+...++..+.++|+|||.|+++.-...+..     +    ...+++.||+...
T Consensus       619 ~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~~~~~~-----~----~~~l~~~g~~~~~  678 (703)
T 3v97_A          619 TFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNKRGFRM-----D----LDGLAKLGLKAQE  678 (703)
T ss_dssp             SBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECCTTCCC-----C----HHHHHHTTEEEEE
T ss_pred             cccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCccccc-----C----HHHHHHcCCceee
Confidence            32           1 1456789999999999999998754433332     2    4567788987544

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=98.79  E-value=2.6e-08  Score=94.10  Aligned_cols=111  Identities=15%  Similarity=0.281  Sum_probs=77.6

Q ss_pred             HHHHhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccC---------------CCCcEEEccCCC----CCCCCCC
Q 022592          132 IVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS---------------NDPSVIACDMSN----TPLNSSS  189 (294)
Q Consensus       132 ~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~---------------~~~~~~~~d~~~----lp~~~~~  189 (294)
                      +++.+... ++.+|||+|||+|.++..++   ..|+|+|+|+               .++.++.+|+..    +++++++
T Consensus       278 ~~~~l~~~-~~~~VLDlgcG~G~~~~~la~~~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~~~~~  356 (433)
T 1uwv_A          278 ALEWLDVQ-PEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNG  356 (433)
T ss_dssp             HHHHHTCC-TTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTC
T ss_pred             HHHhhcCC-CCCEEEECCCCCCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhhhcCC
Confidence            44444332 56799999999999999887   4899999997               367899999977    3456678


Q ss_pred             ccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEE
Q 022592          190 VDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVS  255 (294)
Q Consensus       190 fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~  255 (294)
                      ||+|++.......  ..+++.+.+ ++|+++++++.-..         +...-...|.+.||.+..
T Consensus       357 fD~Vv~dPPr~g~--~~~~~~l~~-~~p~~ivyvsc~p~---------tlard~~~l~~~Gy~~~~  410 (433)
T 1uwv_A          357 FDKVLLDPARAGA--AGVMQQIIK-LEPIRIVYVSCNPA---------TLARDSEALLKAGYTIAR  410 (433)
T ss_dssp             CSEEEECCCTTCC--HHHHHHHHH-HCCSEEEEEESCHH---------HHHHHHHHHHHTTCEEEE
T ss_pred             CCEEEECCCCccH--HHHHHHHHh-cCCCeEEEEECChH---------HHHhhHHHHHHCCcEEEE
Confidence            9999986443322  355555554 78998888853110         112224567778999877

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=98.79  E-value=3.2e-09  Score=95.74  Aligned_cols=86  Identities=19%  Similarity=0.100  Sum_probs=65.0

Q ss_pred             CCCEEEEEcCcccHHHHHhc-----cceEEEeccC-------------------CCCcEEEccCCC-CCCCCCCccEEEE
Q 022592          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS-------------------NDPSVIACDMSN-TPLNSSSVDVAVF  195 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~-------------------~~~~~~~~d~~~-lp~~~~~fD~Vi~  195 (294)
                      .+.+|||||||+|.++..++     .+|+++|+++                   +++.++.+|+.. ++..+++||+|++
T Consensus        95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii~  174 (304)
T 2o07_A           95 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIIT  174 (304)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEEE
T ss_pred             CCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEEE
Confidence            45699999999999999886     3799999985                   246788888765 3445678999998


Q ss_pred             cccccCC-----CHHHHHHHHHHhcCcCcEEEEEee
Q 022592          196 CLSLMGI-----NFPNYLQEAQRVLKPSGWLLIAEV  226 (294)
Q Consensus       196 ~~~l~~~-----~~~~~l~el~r~LkpgG~l~i~e~  226 (294)
                      ....+..     ....+++++.++|+|||+|++...
T Consensus       175 d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~  210 (304)
T 2o07_A          175 DSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGE  210 (304)
T ss_dssp             ECC-----------CHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEecC
Confidence            6554321     235789999999999999998643

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=98.78  E-value=4.1e-09  Score=94.07  Aligned_cols=110  Identities=15%  Similarity=0.141  Sum_probs=75.5

Q ss_pred             CCCEEEEEcCcccHHHHHhc-----cceEEEeccC-------------------CCCcEEEccCCC-CCCCCCCccEEEE
Q 022592          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS-------------------NDPSVIACDMSN-TPLNSSSVDVAVF  195 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~-------------------~~~~~~~~d~~~-lp~~~~~fD~Vi~  195 (294)
                      .+.+|||||||+|.++..++     .+|+++|+++                   +++.++.+|+.. ++...++||+|++
T Consensus        78 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~  157 (283)
T 2i7c_A           78 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIV  157 (283)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEE
T ss_pred             CCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEEE
Confidence            45699999999999999886     3799999986                   245678888765 2323578999998


Q ss_pred             cccccCC---CH--HHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEE
Q 022592          196 CLSLMGI---NF--PNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVS  255 (294)
Q Consensus       196 ~~~l~~~---~~--~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~  255 (294)
                      .....+.   ..  ..+++.+.++|+|||.+++.........    .....+.+.+++. |..+.
T Consensus       158 d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~----~~~~~~~~~l~~~-F~~v~  217 (283)
T 2i7c_A          158 DSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESLWIHV----GTIKNMIGYAKKL-FKKVE  217 (283)
T ss_dssp             ECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECCCTTTCH----HHHHHHHHHHHTT-CSEEE
T ss_pred             cCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEECCCcccCH----HHHHHHHHHHHHH-CCceE
Confidence            6544331   11  6899999999999999998632222110    1123445556554 66554

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=98.78  E-value=3.9e-09  Score=98.07  Aligned_cols=115  Identities=13%  Similarity=0.080  Sum_probs=79.0

Q ss_pred             HhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccC---------------CCCcEEEccCCCCCC----CCCCccE
Q 022592          135 WLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS---------------NDPSVIACDMSNTPL----NSSSVDV  192 (294)
Q Consensus       135 ~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~---------------~~~~~~~~d~~~lp~----~~~~fD~  192 (294)
                      .+... ++.+|||+|||+|.++..++   ..|+|+|+|+               .++.++.+|+.....    ...+||+
T Consensus       204 ~~~~~-~~~~VLDlg~G~G~~~~~la~~~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~  282 (382)
T 1wxx_A          204 YMERF-RGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDL  282 (382)
T ss_dssp             HGGGC-CEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred             HHHhc-CCCeEEEeeeccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeE
Confidence            34444 56799999999999988886   4899999997               247888999876432    2568999


Q ss_pred             EEEcccccCC----------CHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeE
Q 022592          193 AVFCLSLMGI----------NFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAP  253 (294)
Q Consensus       193 Vi~~~~l~~~----------~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~  253 (294)
                      |++.......          +...++.++.++|+|||.|+++.........   .-...+...+.++|...
T Consensus       283 Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~---~~~~~i~~~~~~~g~~~  350 (382)
T 1wxx_A          283 VVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEP---LFYAMVAEAAQDAHRLL  350 (382)
T ss_dssp             EEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHH---HHHHHHHHHHHHTTCCE
T ss_pred             EEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHH---HHHHHHHHHHHHcCCeE
Confidence            9986543221          2457889999999999999998654332210   00123345566777543

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=98.77  E-value=4.1e-09  Score=98.12  Aligned_cols=105  Identities=10%  Similarity=0.196  Sum_probs=75.1

Q ss_pred             CCCEEEEEcCcccHHHHHhc----cceEEEeccC---------------C--CCcEEEccCCC-CCC---CCCCccEEEE
Q 022592          141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVS---------------N--DPSVIACDMSN-TPL---NSSSVDVAVF  195 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~---------------~--~~~~~~~d~~~-lp~---~~~~fD~Vi~  195 (294)
                      ++.+|||+|||+|.++..++    ..|+|+|+|+               .  ++.++.+|+.. ++.   ...+||+|++
T Consensus       212 ~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii~  291 (385)
T 2b78_A          212 AGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIII  291 (385)
T ss_dssp             BTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEEE
Confidence            56799999999999998876    3799999998               1  67789999866 221   2458999998


Q ss_pred             ccccc-----C-C----CHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHH----HHHHHCCCe
Q 022592          196 CLSLM-----G-I----NFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFS----KAVCDLGFA  252 (294)
Q Consensus       196 ~~~l~-----~-~----~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~----~~l~~~Gf~  252 (294)
                      .....     + .    +...++..+.++|+|||.|++.......       +.+.+.    ..+..+|..
T Consensus       292 DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~~-------~~~~~~~~i~~~~~~~g~~  355 (385)
T 2b78_A          292 DPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANM-------TVSQFKKQIEKGFGKQKHT  355 (385)
T ss_dssp             CCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTS-------CHHHHHHHHHHHHTTCCCE
T ss_pred             CCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcC-------CHHHHHHHHHHHHHHcCCc
Confidence            65442     1 2    2446778889999999999997643322       344444    445556665

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=98.76  E-value=1.9e-08  Score=89.55  Aligned_cols=125  Identities=11%  Similarity=0.003  Sum_probs=81.2

Q ss_pred             CCCEEEEEcCcccHHHHHhc----cceEEEeccC-------------------------CCCcEEEccCCC-CCCCCCCc
Q 022592          141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVS-------------------------NDPSVIACDMSN-TPLNSSSV  190 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~-------------------------~~~~~~~~d~~~-lp~~~~~f  190 (294)
                      .+.+|||||||+|.++..++    .+|+++|+++                         +++.++.+|+.. ++. +++|
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~~f  153 (281)
T 1mjf_A           75 KPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NRGF  153 (281)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CCCE
T ss_pred             CCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcc-cCCe
Confidence            45699999999999998886    3799999975                         235667777654 222 5789


Q ss_pred             cEEEEcccccCC-----CHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEEec-----cC
Q 022592          191 DVAVFCLSLMGI-----NFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSKDF-----SN  260 (294)
Q Consensus       191 D~Vi~~~~l~~~-----~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~-----~~  260 (294)
                      |+|++....+..     ....+++++.++|+|||++++..-.....    .-....+.+.+... |..+....     ..
T Consensus       154 D~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~----~~~~~~~~~~l~~~-f~~v~~~~~~vP~~~  228 (281)
T 1mjf_A          154 DVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSVYLF----TDELISAYKEMKKV-FDRVYYYSFPVIGYA  228 (281)
T ss_dssp             EEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEETTTS----HHHHHHHHHHHHHH-CSEEEEEEECCTTSS
T ss_pred             eEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccC----HHHHHHHHHHHHHH-CCceEEEEEecCCCC
Confidence            999987654321     13688999999999999999863221111    01123444555554 65554221     13


Q ss_pred             CeEEEEEEEEC
Q 022592          261 KMFIMFYFKKK  271 (294)
Q Consensus       261 ~~f~~i~~~k~  271 (294)
                      ..+.++++.|.
T Consensus       229 g~~~~~~as~~  239 (281)
T 1mjf_A          229 SPWAFLVGVKG  239 (281)
T ss_dssp             SSEEEEEEEES
T ss_pred             ceEEEEEeeCC
Confidence            45666777664

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=98.76  E-value=3.9e-09  Score=95.69  Aligned_cols=85  Identities=18%  Similarity=0.116  Sum_probs=62.0

Q ss_pred             CCCEEEEEcCcccHHHHHhc-----cceEEEeccC-------------------CCCcEEEccCCC-CCCCCCCccEEEE
Q 022592          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS-------------------NDPSVIACDMSN-TPLNSSSVDVAVF  195 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~-------------------~~~~~~~~d~~~-lp~~~~~fD~Vi~  195 (294)
                      ...+|||||||+|.++..++     .+|+++|+++                   +++.++.+|+.. ++..+++||+|++
T Consensus       108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~  187 (314)
T 2b2c_A          108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIIT  187 (314)
T ss_dssp             SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEE
T ss_pred             CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEEE
Confidence            44699999999999999886     3799999986                   135677777755 3334678999998


Q ss_pred             cccccCC-C--H--HHHHHHHHHhcCcCcEEEEEe
Q 022592          196 CLSLMGI-N--F--PNYLQEAQRVLKPSGWLLIAE  225 (294)
Q Consensus       196 ~~~l~~~-~--~--~~~l~el~r~LkpgG~l~i~e  225 (294)
                      ....+.. .  .  ..+++++.++|+|||++++..
T Consensus       188 d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~  222 (314)
T 2b2c_A          188 DSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG  222 (314)
T ss_dssp             CCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred             cCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence            6543221 1  1  688999999999999999853

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=98.74  E-value=7.4e-09  Score=96.61  Aligned_cols=89  Identities=13%  Similarity=0.094  Sum_probs=69.2

Q ss_pred             CCCEEEEEcCcccHHHHHhc----cceEEEeccC---------------C-CCcEEEccCCCCCC----CCCCccEEEEc
Q 022592          141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVS---------------N-DPSVIACDMSNTPL----NSSSVDVAVFC  196 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~---------------~-~~~~~~~d~~~lp~----~~~~fD~Vi~~  196 (294)
                      ++.+|||+|||+|.++..++    ..|+|+|+++               . ++.++.+|+.....    ..++||+|++.
T Consensus       217 ~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~d  296 (396)
T 2as0_A          217 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLD  296 (396)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEEC
Confidence            66799999999999998886    3799999997               1 57789999876431    25689999996


Q ss_pred             ccccC----------CCHHHHHHHHHHhcCcCcEEEEEeecCC
Q 022592          197 LSLMG----------INFPNYLQEAQRVLKPSGWLLIAEVKSR  229 (294)
Q Consensus       197 ~~l~~----------~~~~~~l~el~r~LkpgG~l~i~e~~~~  229 (294)
                      .....          .+...++.++.++|+|||.|+++.....
T Consensus       297 pP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~  339 (396)
T 2as0_A          297 PPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQH  339 (396)
T ss_dssp             CCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTT
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCC
Confidence            54332          1356788999999999999999875443

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=98.73  E-value=9.3e-08  Score=88.41  Aligned_cols=117  Identities=17%  Similarity=0.200  Sum_probs=80.1

Q ss_pred             CCEEEEEcCcccHHHHHhc--------------------cceEEEeccCCCC---------------------------c
Q 022592          142 SLVIADFGCGDARLAKSVK--------------------NKVFSFDLVSNDP---------------------------S  174 (294)
Q Consensus       142 ~~~VLDiGcG~G~~~~~l~--------------------~~v~gvD~s~~~~---------------------------~  174 (294)
                      ..+|+|+|||+|..+..+.                    -.|+..|+.....                           .
T Consensus        53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~  132 (374)
T 3b5i_A           53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY  132 (374)
T ss_dssp             CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred             ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence            4689999999999877662                    1466777665221                           1


Q ss_pred             EEE---ccCCCCCCCCCCccEEEEcccccCC---------------------------------------CHHHHHHHHH
Q 022592          175 VIA---CDMSNTPLNSSSVDVAVFCLSLMGI---------------------------------------NFPNYLQEAQ  212 (294)
Q Consensus       175 ~~~---~d~~~lp~~~~~fD~Vi~~~~l~~~---------------------------------------~~~~~l~el~  212 (294)
                      |+.   +.+..-.+|++++|+|+++.+|||.                                       |+..+|+..+
T Consensus       133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra  212 (374)
T 3b5i_A          133 FVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARA  212 (374)
T ss_dssp             EEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222   2233345789999999999999993                                       1234688889


Q ss_pred             HhcCcCcEEEEEeecCCC--------------------------------------CCCCCCCCHHHHHHHHH-HCCCeE
Q 022592          213 RVLKPSGWLLIAEVKSRF--------------------------------------DPNTGGADPNKFSKAVC-DLGFAP  253 (294)
Q Consensus       213 r~LkpgG~l~i~e~~~~~--------------------------------------~~~~~~~~~~~~~~~l~-~~Gf~~  253 (294)
                      +.|+|||.+++.-.....                                      .......+.+++..+++ ..||.+
T Consensus       213 ~eL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~~l~~al~~l~~eG~i~~e~~d~f~~P~y~ps~~E~~~~l~~~~~F~I  292 (374)
T 3b5i_A          213 AEVKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVREGLVAAEKRDGFNIPVYAPSLQDFKEVVDANGSFAI  292 (374)
T ss_dssp             HHEEEEEEEEEEEEECCCSSTTCCHHHHHHHSSHHHHHHHHTTSSSSSCHHHHSSCCCCBCCCCHHHHHHHHHHHCSEEE
T ss_pred             HHhCCCCEEEEEEecCCCCccccccchhhHHHHHHHHHHHHHHHhCCcchhhcccCCccccCCCHHHHHHHHHhcCCcEE
Confidence            999999999997432210                                      00111258899999998 589988


Q ss_pred             EEEec
Q 022592          254 VSKDF  258 (294)
Q Consensus       254 ~~~~~  258 (294)
                      ..+..
T Consensus       293 ~~le~  297 (374)
T 3b5i_A          293 DKLVV  297 (374)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            77543

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=98.72  E-value=1.8e-09  Score=94.12  Aligned_cols=95  Identities=20%  Similarity=0.162  Sum_probs=68.7

Q ss_pred             HHHHHHHHhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccCC-------------CCcEEEccCCCCCCCC-CCc
Q 022592          128 PVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVSN-------------DPSVIACDMSNTPLNS-SSV  190 (294)
Q Consensus       128 ~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~~-------------~~~~~~~d~~~lp~~~-~~f  190 (294)
                      ..+.+++.+... ++.+|||||||+|.++..++   ..|+|+|+++.             ++.++.+|+.+++++. ++|
T Consensus        17 ~~~~i~~~~~~~-~~~~VLDiG~G~G~~~~~l~~~~~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~f   95 (245)
T 1yub_A           17 VLNQIIKQLNLK-ETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQRY   95 (245)
T ss_dssp             THHHHHHHCCCC-SSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSEE
T ss_pred             HHHHHHHhcCCC-CCCEEEEEeCCCCHHHHHHHHhCCeEEEEECCHHHHHHHHHHhccCCceEEEECChhhcCcccCCCc
Confidence            345566666543 56799999999999988886   48999999972             3567889999888764 678


Q ss_pred             cEEEEcccccCC------------CHHHHH----HHHHHhcCcCcEEEEE
Q 022592          191 DVAVFCLSLMGI------------NFPNYL----QEAQRVLKPSGWLLIA  224 (294)
Q Consensus       191 D~Vi~~~~l~~~------------~~~~~l----~el~r~LkpgG~l~i~  224 (294)
                       .|+++...+..            ....++    +.+.|+|+|||.+.+.
T Consensus        96 -~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~  144 (245)
T 1yub_A           96 -KIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLL  144 (245)
T ss_dssp             -EEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHH
T ss_pred             -EEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhh
Confidence             66766433321            222334    6689999999988774

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=98.71  E-value=4.1e-08  Score=91.59  Aligned_cols=107  Identities=14%  Similarity=0.099  Sum_probs=74.3

Q ss_pred             CCCEEEEEcCcccHHHHHhc---cceEEEeccCC--------------CCcEEEccCCCCC-CCCCCccEEEEcccccCC
Q 022592          141 PSLVIADFGCGDARLAKSVK---NKVFSFDLVSN--------------DPSVIACDMSNTP-LNSSSVDVAVFCLSLMGI  202 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~~--------------~~~~~~~d~~~lp-~~~~~fD~Vi~~~~l~~~  202 (294)
                      ++.+|||+|||+|.++..++   ..|+++|+|+.              ...+.++|+.... ...+.||+|++.......
T Consensus       214 ~g~~VLDlg~GtG~~sl~~a~~ga~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~f~~  293 (393)
T 4dmg_A          214 PGERVLDVYSYVGGFALRAARKGAYALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPTLVK  293 (393)
T ss_dssp             TTCEEEEESCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCCCCS
T ss_pred             CCCeEEEcccchhHHHHHHHHcCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCcCCC
Confidence            47899999999999998887   35999999981              2346778876532 213449999987554221


Q ss_pred             ----------CHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHH----HHHHHHHCCCeEE
Q 022592          203 ----------NFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNK----FSKAVCDLGFAPV  254 (294)
Q Consensus       203 ----------~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~----~~~~l~~~Gf~~~  254 (294)
                                +...++..+.++|+|||.|+++......       +.+.    +...+.++|..+.
T Consensus       294 ~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~~-------~~~~f~~~v~~a~~~~g~~~~  352 (393)
T 4dmg_A          294 RPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYHL-------RLEDLLEVARRAAADLGRRLR  352 (393)
T ss_dssp             SGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTS-------CHHHHHHHHHHHHHHHTCCEE
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCC-------CHHHHHHHHHHHHHHhCCeEE
Confidence                      3457889999999999999987644322       2344    4455566665443

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=98.70  E-value=1.4e-08  Score=94.80  Aligned_cols=111  Identities=16%  Similarity=0.090  Sum_probs=77.5

Q ss_pred             CCCEEEEEcCcccHHHHHhc----cceEEEeccC------------C-----CCcEEEccCCCCCC----CCCCccEEEE
Q 022592          141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVS------------N-----DPSVIACDMSNTPL----NSSSVDVAVF  195 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~------------~-----~~~~~~~d~~~lp~----~~~~fD~Vi~  195 (294)
                      ++.+|||+|||+|.++..++    ..|+|+|+++            .     ++.++.+|+.....    ...+||+|++
T Consensus       220 ~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii~  299 (396)
T 3c0k_A          220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM  299 (396)
T ss_dssp             TTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEEE
Confidence            66799999999999988876    3799999996            1     45688888866421    1468999999


Q ss_pred             cccccC----------CCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEE
Q 022592          196 CLSLMG----------INFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPV  254 (294)
Q Consensus       196 ~~~l~~----------~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~  254 (294)
                      ......          .....++.++.++|+|||+++++.........   ...+.+...+.++|+...
T Consensus       300 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~---~~~~~i~~~~~~~g~~~~  365 (396)
T 3c0k_A          300 DPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSGLMTSD---LFQKIIADAAIDAGRDVQ  365 (396)
T ss_dssp             CCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCTTCCHH---HHHHHHHHHHHHHTCCEE
T ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCHH---HHHHHHHHHHHHcCCeEE
Confidence            754321          24568899999999999999997644332210   011234456677786543

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=98.68  E-value=2.6e-08  Score=89.48  Aligned_cols=70  Identities=24%  Similarity=0.319  Sum_probs=51.8

Q ss_pred             HHHHHHHhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccC---------------CCCcEEEccCCCCCCCCCCc
Q 022592          129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSV  190 (294)
Q Consensus       129 ~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~---------------~~~~~~~~d~~~lp~~~~~f  190 (294)
                      .+.+++.+... ++.+|||||||+|.++..++   ..|+|+|+++               .++.++.+|+..++++  +|
T Consensus        31 ~~~i~~~~~~~-~~~~VLDiG~G~G~lt~~La~~~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~~--~~  107 (299)
T 2h1r_A           31 LDKIIYAAKIK-SSDIVLEIGCGTGNLTVKLLPLAKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVFP--KF  107 (299)
T ss_dssp             HHHHHHHHCCC-TTCEEEEECCTTSTTHHHHTTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCCC--CC
T ss_pred             HHHHHHhcCCC-CcCEEEEEcCcCcHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCcc--cC
Confidence            45566665443 66799999999999999887   3899999986               3577889999887764  79


Q ss_pred             cEEEEcccccC
Q 022592          191 DVAVFCLSLMG  201 (294)
Q Consensus       191 D~Vi~~~~l~~  201 (294)
                      |+|+++...++
T Consensus       108 D~Vv~n~py~~  118 (299)
T 2h1r_A          108 DVCTANIPYKI  118 (299)
T ss_dssp             SEEEEECCGGG
T ss_pred             CEEEEcCCccc
Confidence            99999876654

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=98.66  E-value=4.6e-08  Score=92.69  Aligned_cols=143  Identities=14%  Similarity=0.177  Sum_probs=94.9

Q ss_pred             CCcHHHHHHHHhhccCCCCEEEEEcCcccHHHHHhc------------------cceEEEeccC---------------C
Q 022592          125 PELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK------------------NKVFSFDLVS---------------N  171 (294)
Q Consensus       125 ~~~~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~------------------~~v~gvD~s~---------------~  171 (294)
                      |...++.+++.+... ++.+|||+|||+|.++..++                  ..++|+|+++               .
T Consensus       156 P~~v~~~mv~~l~~~-~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~  234 (445)
T 2okc_A          156 PRPLIQAMVDCINPQ-MGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIG  234 (445)
T ss_dssp             CHHHHHHHHHHHCCC-TTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCC
T ss_pred             cHHHHHHHHHHhCCC-CCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCC
Confidence            344455666666543 56799999999999877653                  3689999987               1


Q ss_pred             --CCcEEEccCCCCCCCCCCccEEEEcccccCC---C---------------HHHHHHHHHHhcCcCcEEEEEeecCCCC
Q 022592          172 --DPSVIACDMSNTPLNSSSVDVAVFCLSLMGI---N---------------FPNYLQEAQRVLKPSGWLLIAEVKSRFD  231 (294)
Q Consensus       172 --~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~---~---------------~~~~l~el~r~LkpgG~l~i~e~~~~~~  231 (294)
                        ++.+.++|....+.. ..||+|+++..+.+.   +               ...++..+.++|+|||.+.++...+...
T Consensus       235 ~~~~~i~~gD~l~~~~~-~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p~~~L~  313 (445)
T 2okc_A          235 TDRSPIVCEDSLEKEPS-TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPDNVLF  313 (445)
T ss_dssp             SSCCSEEECCTTTSCCS-SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHH
T ss_pred             cCCCCEeeCCCCCCccc-CCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEECCcccc
Confidence              567899998776653 489999998777652   1               1378999999999999999876443221


Q ss_pred             CCCCCCCHHHHHH-HHHHCCCeEEEEec------cCCeEEEEEEEECC
Q 022592          232 PNTGGADPNKFSK-AVCDLGFAPVSKDF------SNKMFIMFYFKKKE  272 (294)
Q Consensus       232 ~~~~~~~~~~~~~-~l~~~Gf~~~~~~~------~~~~f~~i~~~k~~  272 (294)
                      ..   -....+.+ +++..++..+..-.      ....-.+++++|..
T Consensus       314 ~~---~~~~~iR~~L~~~~~l~~ii~lp~~~F~~t~v~t~Il~~~k~~  358 (445)
T 2okc_A          314 EA---GAGETIRKRLLQDFNLHTILRLPTGIFYAQGVKANVLFFSKGQ  358 (445)
T ss_dssp             CS---THHHHHHHHHHHHEEEEEEEECCSSSSSSTTCCEEEEEEEESS
T ss_pred             cC---cHHHHHHHHHHhcCcEEEEEeCCCCCccCCCCCEEEEEEECCC
Confidence            11   02245665 55665565443211      12334566777754

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=98.63  E-value=5.5e-08  Score=87.25  Aligned_cols=74  Identities=22%  Similarity=0.201  Sum_probs=60.5

Q ss_pred             cHHHHHHHHhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccC-------------CCCcEEEccCCCCCCCCCCc
Q 022592          127 LPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS-------------NDPSVIACDMSNTPLNSSSV  190 (294)
Q Consensus       127 ~~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~-------------~~~~~~~~d~~~lp~~~~~f  190 (294)
                      ..++.+++.+... ++.+|||||||+|.++..++   ..|+|+|+++             .++.++.+|+..+++++.+|
T Consensus        37 ~i~~~Iv~~l~~~-~~~~VLEIG~G~G~lT~~La~~~~~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~~~~~~~f  115 (295)
T 3gru_A           37 NFVNKAVESANLT-KDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDLNKLDF  115 (295)
T ss_dssp             HHHHHHHHHTTCC-TTCEEEEECCTTSHHHHHHHHHSSEEEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTSCGGGSCC
T ss_pred             HHHHHHHHhcCCC-CcCEEEEECCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHHhccCCCeEEEECchhhCCcccCCc
Confidence            3456667766554 66799999999999999887   4899999998             47789999999998888889


Q ss_pred             cEEEEcccccC
Q 022592          191 DVAVFCLSLMG  201 (294)
Q Consensus       191 D~Vi~~~~l~~  201 (294)
                      |+|+++..++.
T Consensus       116 D~Iv~NlPy~i  126 (295)
T 3gru_A          116 NKVVANLPYQI  126 (295)
T ss_dssp             SEEEEECCGGG
T ss_pred             cEEEEeCcccc
Confidence            99998866543

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=98.59  E-value=1.2e-07  Score=83.33  Aligned_cols=87  Identities=13%  Similarity=0.104  Sum_probs=62.8

Q ss_pred             CCCCEEEEEcCcccHHHHHhcc-----ceEEEeccCC-------------CCcEEEccCCCCCCCCCCccEEEEcccccC
Q 022592          140 SPSLVIADFGCGDARLAKSVKN-----KVFSFDLVSN-------------DPSVIACDMSNTPLNSSSVDVAVFCLSLMG  201 (294)
Q Consensus       140 ~~~~~VLDiGcG~G~~~~~l~~-----~v~gvD~s~~-------------~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~  201 (294)
                      .++.+|||||||+|.|+..++.     .++|+|++.+             ++..+..++....++.+.||+|+|..+..-
T Consensus        73 ~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~DlVlsD~apns  152 (277)
T 3evf_A           73 KLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNVQSLGWNIITFKDKTDIHRLEPVKCDTLLCDIGESS  152 (277)
T ss_dssp             CCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECCCCCC
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccccCcCCCCeEEEeccceehhcCCCCccEEEecCccCc
Confidence            4667999999999999997652     5677777631             334455666556677789999999876661


Q ss_pred             ----CCHH---HHHHHHHHhcCcC-cEEEEEee
Q 022592          202 ----INFP---NYLQEAQRVLKPS-GWLLIAEV  226 (294)
Q Consensus       202 ----~~~~---~~l~el~r~Lkpg-G~l~i~e~  226 (294)
                          .|-.   .++..+.++|+|| |.|++--+
T Consensus       153 G~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf  185 (277)
T 3evf_A          153 SSSVTEGERTVRVLDTVEKWLACGVDNFCVKVL  185 (277)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEES
T ss_pred             CchHHHHHHHHHHHHHHHHHhCCCCCeEEEEec
Confidence                1221   3468888999999 99999543

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.57  E-value=1.5e-07  Score=92.40  Aligned_cols=117  Identities=18%  Similarity=0.263  Sum_probs=82.6

Q ss_pred             CcHHHHHHHhcChhhHHHHHHhHHhhhccCCCcHHHHHHHHhhcc---CCCCEEEEEcCcccHHHHHhc----c-----c
Q 022592           95 TGKEALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIVKWLKDH---SPSLVIADFGCGDARLAKSVK----N-----K  162 (294)
Q Consensus        95 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~VLDiGcG~G~~~~~l~----~-----~  162 (294)
                      -.....+.|..++-.|+.|.+......           .+.+...   ....+|||||||+|.+.....    .     +
T Consensus       319 L~s~tYevFEkD~vKy~~Ye~AI~~Al-----------~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vk  387 (637)
T 4gqb_A          319 LESQTYEVFEKDPIKYSQYQQAIYKCL-----------LDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIK  387 (637)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHHHHHH-----------HHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEE
T ss_pred             hhhhhhhhhcCChhhHHHHHHHHHHHH-----------HHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcE
Confidence            455677888999999999886543322           2222221   123479999999999844332    1     6


Q ss_pred             eEEEeccC---------------CCCcEEEccCCCCCCCCCCccEEEEcccccC---CCHHHHHHHHHHhcCcCcEEEE
Q 022592          163 VFSFDLVS---------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMG---INFPNYLQEAQRVLKPSGWLLI  223 (294)
Q Consensus       163 v~gvD~s~---------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~---~~~~~~l~el~r~LkpgG~l~i  223 (294)
                      |++|+-++               +.+.++.+|++++.+| +++|+||+-..=..   .....++....|.|||||.++=
T Consensus       388 VyAVEknp~A~~a~~~v~~N~~~dkVtVI~gd~eev~LP-EKVDIIVSEwMG~fLl~E~mlevL~Ardr~LKPgGimiP  465 (637)
T 4gqb_A          388 LYAVEKNPNAVVTLENWQFEEWGSQVTVVSSDMREWVAP-EKADIIVSELLGSFADNELSPECLDGAQHFLKDDGVSIP  465 (637)
T ss_dssp             EEEEESCHHHHHHHHHHHHHTTGGGEEEEESCTTTCCCS-SCEEEEECCCCBTTBGGGCHHHHHHHHGGGEEEEEEEES
T ss_pred             EEEEECCHHHHHHHHHHHhccCCCeEEEEeCcceeccCC-cccCEEEEEcCcccccccCCHHHHHHHHHhcCCCcEEcc
Confidence            89999987               4688999999998876 57999997433222   2344788888999999998653

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=98.56  E-value=5.7e-07  Score=84.66  Aligned_cols=99  Identities=16%  Similarity=0.201  Sum_probs=69.8

Q ss_pred             CCCEEEEEcCcccHHHHHhc---cceEEEeccCC--------------CCcEEEccCCCCCCCCCCccEEEEcccccCCC
Q 022592          141 PSLVIADFGCGDARLAKSVK---NKVFSFDLVSN--------------DPSVIACDMSNTPLNSSSVDVAVFCLSLMGIN  203 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~~--------------~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~~  203 (294)
                      ++.+|||+|||+|.++..++   ..|+|+|+|+.              .+.++.+|+..+...  +||+|++....... 
T Consensus       290 ~~~~VLDlgcG~G~~sl~la~~~~~V~gvD~s~~ai~~A~~n~~~ngl~v~~~~~d~~~~~~~--~fD~Vv~dPPr~g~-  366 (425)
T 2jjq_A          290 EGEKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVEINNVDAEFEVASDREVSVK--GFDTVIVDPPRAGL-  366 (425)
T ss_dssp             CSSEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCCEEEEECCTTTCCCT--TCSEEEECCCTTCS-
T ss_pred             CCCEEEEeeccchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEECChHHcCcc--CCCEEEEcCCccch-
Confidence            56799999999999999887   48999999971              167899999886532  79999986542221 


Q ss_pred             HHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEE
Q 022592          204 FPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVS  255 (294)
Q Consensus       204 ~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~  255 (294)
                      ...+++.+. .|+|||.++++.            ++..+..-+....|++..
T Consensus       367 ~~~~~~~l~-~l~p~givyvsc------------~p~tlarDl~~l~y~l~~  405 (425)
T 2jjq_A          367 HPRLVKRLN-REKPGVIVYVSC------------NPETFARDVKMLDYRIDE  405 (425)
T ss_dssp             CHHHHHHHH-HHCCSEEEEEES------------CHHHHHHHHHHSSCCEEE
T ss_pred             HHHHHHHHH-hcCCCcEEEEEC------------ChHHHHhHHhhCeEEEEE
Confidence            124555554 599999999863            345555444443366655

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=98.55  E-value=5.4e-07  Score=83.45  Aligned_cols=116  Identities=17%  Similarity=0.267  Sum_probs=78.0

Q ss_pred             CCEEEEEcCcccHHHHHhcc----------------------ceEEEeccCC------------------------CCcE
Q 022592          142 SLVIADFGCGDARLAKSVKN----------------------KVFSFDLVSN------------------------DPSV  175 (294)
Q Consensus       142 ~~~VLDiGcG~G~~~~~l~~----------------------~v~gvD~s~~------------------------~~~~  175 (294)
                      ..+|+|+||++|..+..+..                      .|+..|+...                        +..|
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f  132 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL  132 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence            46899999999987765531                      3445565531                        1234


Q ss_pred             EEccC---CCCCCCCCCccEEEEcccccCC-CH------------------------H---------------HHHHHHH
Q 022592          176 IACDM---SNTPLNSSSVDVAVFCLSLMGI-NF------------------------P---------------NYLQEAQ  212 (294)
Q Consensus       176 ~~~d~---~~lp~~~~~fD~Vi~~~~l~~~-~~------------------------~---------------~~l~el~  212 (294)
                      +.+..   ..-.||++++|+|+++.+|||. +.                        .               .+|+..+
T Consensus       133 ~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra  212 (384)
T 2efj_A          133 IGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHS  212 (384)
T ss_dssp             EEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44433   3356889999999999999993 11                        1               1256668


Q ss_pred             HhcCcCcEEEEEeecCCCC--------------------------------CCCCCCCHHHHHHHHHHCC-CeEEEEe
Q 022592          213 RVLKPSGWLLIAEVKSRFD--------------------------------PNTGGADPNKFSKAVCDLG-FAPVSKD  257 (294)
Q Consensus       213 r~LkpgG~l~i~e~~~~~~--------------------------------~~~~~~~~~~~~~~l~~~G-f~~~~~~  257 (294)
                      +.|+|||.+++.-......                                ......+.+++..++++.| |.+...+
T Consensus       213 ~eL~pGG~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~ek~dsf~~P~y~ps~~E~~~~le~~g~F~i~~le  290 (384)
T 2efj_A          213 EELISRGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILYLE  290 (384)
T ss_dssp             HHEEEEEEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHHTSSCHHHHHTCCCSBCCCCHHHHHHHHHHHCSEEEEEEE
T ss_pred             HHhccCCeEEEEEecCCCcccCcccHHHHHHHHHHHHHhCCcchhhhcccCCcccCCCHHHHHHHHHHcCCceEEEEE
Confidence            9999999999975433221                                1122368999999999985 7777654

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=98.49  E-value=1.8e-07  Score=92.05  Aligned_cols=117  Identities=19%  Similarity=0.198  Sum_probs=80.4

Q ss_pred             cHHHHHHHhcChhhHHHHHHhHHhhhccCCCcHHHHHHHHhhccCCCCEEEEEcCcccHHHHH----h--cc--------
Q 022592           96 GKEALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIVKWLKDHSPSLVIADFGCGDARLAKS----V--KN--------  161 (294)
Q Consensus        96 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~----l--~~--------  161 (294)
                      .....+.|..+.-.|+.|.......           +.+.......+..|||||||+|.+...    .  +.        
T Consensus       375 es~tYe~fekD~vRy~~Y~~AI~~a-----------l~d~~~~~~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~  443 (745)
T 3ua3_A          375 DSGVYNTFEQDQIKYDVYGEAVVGA-----------LKDLGADGRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQE  443 (745)
T ss_dssp             CHHHHHHHHHCHHHHHHHHHHHHHH-----------HHHHHTTCCSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSC
T ss_pred             chHHHHHHcCChhhHHHHHHHHHHH-----------HHHhhcccCCCcEEEEECCCCCHHHHHHHHHHHHhCcccccccc
Confidence            4455677778888888877544221           112221111235799999999998532    1  12        


Q ss_pred             ----ceEEEeccC---------------CCCcEEEccCCCCCCC-----CCCccEEEEcccccCC---CHHHHHHHHHHh
Q 022592          162 ----KVFSFDLVS---------------NDPSVIACDMSNTPLN-----SSSVDVAVFCLSLMGI---NFPNYLQEAQRV  214 (294)
Q Consensus       162 ----~v~gvD~s~---------------~~~~~~~~d~~~lp~~-----~~~fD~Vi~~~~l~~~---~~~~~l~el~r~  214 (294)
                          +|+|||.++               +.+.++.+|++++.++     .+.+|+||+-..=.+.   -....|..+.+.
T Consensus       444 ~~~~kVyAVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~  523 (745)
T 3ua3_A          444 SLKVKLYIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAKDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGF  523 (745)
T ss_dssp             CCEEEEEEEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHHHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGG
T ss_pred             ccccEEEEEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccccCCCCcccEEEEeccccccchhccHHHHHHHHHh
Confidence                899999986               4689999999998764     5789999986553332   235788888899


Q ss_pred             cCcCcEEEE
Q 022592          215 LKPSGWLLI  223 (294)
Q Consensus       215 LkpgG~l~i  223 (294)
                      |+|||.++=
T Consensus       524 Lkp~Gi~iP  532 (745)
T 3ua3_A          524 LKPTTISIP  532 (745)
T ss_dssp             SCTTCEEES
T ss_pred             CCCCcEEEC
Confidence            999997654

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=98.49  E-value=8.5e-08  Score=83.59  Aligned_cols=68  Identities=13%  Similarity=0.142  Sum_probs=50.1

Q ss_pred             HHHHHHhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccC-------------CCCcEEEccCCCCCCCC-CCccE
Q 022592          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS-------------NDPSVIACDMSNTPLNS-SSVDV  192 (294)
Q Consensus       130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~-------------~~~~~~~~d~~~lp~~~-~~fD~  192 (294)
                      +.+++.+... ++.+|||||||+|.++..++   ..|+|+|+++             .++.++.+|+..+++++ ..| .
T Consensus        20 ~~i~~~~~~~-~~~~VLDiG~G~G~lt~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~~-~   97 (244)
T 1qam_A           20 DKIMTNIRLN-EHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQSY-K   97 (244)
T ss_dssp             HHHHTTCCCC-TTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSCCC-E
T ss_pred             HHHHHhCCCC-CCCEEEEEeCCchHHHHHHHHcCCeEEEEECCHHHHHHHHHhhccCCCeEEEEChHHhCCcccCCCe-E
Confidence            3444444332 56799999999999999887   4899999986             36789999999988764 445 4


Q ss_pred             EEEcccc
Q 022592          193 AVFCLSL  199 (294)
Q Consensus       193 Vi~~~~l  199 (294)
                      |+++..+
T Consensus        98 vv~nlPy  104 (244)
T 1qam_A           98 IFGNIPY  104 (244)
T ss_dssp             EEEECCG
T ss_pred             EEEeCCc
Confidence            5555443

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=98.47  E-value=1.8e-07  Score=90.71  Aligned_cols=142  Identities=13%  Similarity=0.158  Sum_probs=91.6

Q ss_pred             cHHHHHHHHhhccCCCCEEEEEcCcccHHHHHhc-----------------------cceEEEeccC-------------
Q 022592          127 LPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK-----------------------NKVFSFDLVS-------------  170 (294)
Q Consensus       127 ~~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~-----------------------~~v~gvD~s~-------------  170 (294)
                      ..+..+++.+... ++.+|||.|||+|.++..+.                       ..++|+|+++             
T Consensus       156 ~iv~~mv~~l~p~-~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~  234 (541)
T 2ar0_A          156 PLIKTIIHLLKPQ-PREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLH  234 (541)
T ss_dssp             HHHHHHHHHHCCC-TTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhccC-CCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHh
Confidence            3445566666543 56799999999999876553                       2689999987             


Q ss_pred             --CC-----CcEEEccCCCCC-CCCCCccEEEEcccccCC-C--------------HHHHHHHHHHhcCcCcEEEEEeec
Q 022592          171 --ND-----PSVIACDMSNTP-LNSSSVDVAVFCLSLMGI-N--------------FPNYLQEAQRVLKPSGWLLIAEVK  227 (294)
Q Consensus       171 --~~-----~~~~~~d~~~lp-~~~~~fD~Vi~~~~l~~~-~--------------~~~~l~el~r~LkpgG~l~i~e~~  227 (294)
                        ..     +.+.++|....+ .....||+|+++..+... .              ...++..+.+.|+|||++.++...
T Consensus       235 gi~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p~  314 (541)
T 2ar0_A          235 DIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPD  314 (541)
T ss_dssp             TCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred             CCCccccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEecC
Confidence              22     678888876543 345789999998776542 1              237899999999999999998654


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHCCCeEEEEecc-------CCeEEEEEEEECC
Q 022592          228 SRFDPNTGGADPNKFSKAVCDLGFAPVSKDFS-------NKMFIMFYFKKKE  272 (294)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~-------~~~f~~i~~~k~~  272 (294)
                      +.....   -....+.+.|.+.+.-...+...       ...-.+++++|..
T Consensus       315 ~~L~~~---~~~~~iR~~L~~~~~l~~ii~Lp~~~F~~t~v~t~Ilvl~k~~  363 (541)
T 2ar0_A          315 NVLFEG---GKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGT  363 (541)
T ss_dssp             HHHHCC---THHHHHHHHHHHHEEEEEEEECCSSCSSSCSCCEEEEEEEEBC
T ss_pred             cceecC---cHHHHHHHHHhhcCCEEEEEEcCcCcccCCCCcEEEEEEECCC
Confidence            432111   02355666665544322212222       2234677777754

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=98.39  E-value=2.4e-06  Score=78.50  Aligned_cols=116  Identities=18%  Similarity=0.231  Sum_probs=79.2

Q ss_pred             CCEEEEEcCcccHHHHHhcc---------------------ceEEEeccCC----------------CCcEEEc---cCC
Q 022592          142 SLVIADFGCGDARLAKSVKN---------------------KVFSFDLVSN----------------DPSVIAC---DMS  181 (294)
Q Consensus       142 ~~~VLDiGcG~G~~~~~l~~---------------------~v~gvD~s~~----------------~~~~~~~---d~~  181 (294)
                      ..+|+|+||++|..+..+..                     .|+..|+..+                +..|+.+   .+.
T Consensus        52 ~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSFy  131 (359)
T 1m6e_X           52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFY  131 (359)
T ss_dssp             EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSS
T ss_pred             ceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhhh
Confidence            35799999999986654321                     4667787652                1234443   334


Q ss_pred             CCCCCCCCccEEEEcccccCC-C---------------------------------HHHHHHHHHHhcCcCcEEEEEeec
Q 022592          182 NTPLNSSSVDVAVFCLSLMGI-N---------------------------------FPNYLQEAQRVLKPSGWLLIAEVK  227 (294)
Q Consensus       182 ~lp~~~~~fD~Vi~~~~l~~~-~---------------------------------~~~~l~el~r~LkpgG~l~i~e~~  227 (294)
                      .-.||++++|+|+++.+|||. +                                 +..+|+..++.|+|||.+++.-..
T Consensus       132 ~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~~g  211 (359)
T 1m6e_X          132 GRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILG  211 (359)
T ss_dssp             SCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEEE
T ss_pred             hccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEec
Confidence            467889999999999999993 1                                 124588889999999999997432


Q ss_pred             CCC------------------------------------CCCCCCCCHHHHHHHHHHCCC-eEEEEe
Q 022592          228 SRF------------------------------------DPNTGGADPNKFSKAVCDLGF-APVSKD  257 (294)
Q Consensus       228 ~~~------------------------------------~~~~~~~~~~~~~~~l~~~Gf-~~~~~~  257 (294)
                      ...                                    .......+.+++..++++.|+ .+...+
T Consensus       212 r~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~ek~d~f~~P~y~ps~~E~~~~ie~~G~F~i~~~e  278 (359)
T 1m6e_X          212 RRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIE  278 (359)
T ss_dssp             CSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEEE
T ss_pred             CCCCCccccchHHHHHHHHHHHHHHHHccccchhhhhccCCCccCCCHHHHHHHHHHcCCceEEEEE
Confidence            211                                    111112588999999999965 666543

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=98.34  E-value=5.6e-07  Score=79.72  Aligned_cols=72  Identities=14%  Similarity=0.071  Sum_probs=56.8

Q ss_pred             HHHHHHHHhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccC------------CCCcEEEccCCCCCCCCC-Ccc
Q 022592          128 PVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS------------NDPSVIACDMSNTPLNSS-SVD  191 (294)
Q Consensus       128 ~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~------------~~~~~~~~d~~~lp~~~~-~fD  191 (294)
                      .++.+++.+... ++ +|||||||+|.++..++   ..|+|+|+++            .++.++.+|+..+++++. .+|
T Consensus        35 i~~~Iv~~~~~~-~~-~VLEIG~G~G~lt~~L~~~~~~V~avEid~~~~~~l~~~~~~~~v~vi~~D~l~~~~~~~~~~~  112 (271)
T 3fut_A           35 HLRRIVEAARPF-TG-PVFEVGPGLGALTRALLEAGAEVTAIEKDLRLRPVLEETLSGLPVRLVFQDALLYPWEEVPQGS  112 (271)
T ss_dssp             HHHHHHHHHCCC-CS-CEEEECCTTSHHHHHHHHTTCCEEEEESCGGGHHHHHHHTTTSSEEEEESCGGGSCGGGSCTTE
T ss_pred             HHHHHHHhcCCC-CC-eEEEEeCchHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcCCCCEEEEECChhhCChhhccCcc
Confidence            345566666554 66 99999999999999887   4899999997            367899999998887643 689


Q ss_pred             EEEEcccccC
Q 022592          192 VAVFCLSLMG  201 (294)
Q Consensus       192 ~Vi~~~~l~~  201 (294)
                      .|+++...+.
T Consensus       113 ~iv~NlPy~i  122 (271)
T 3fut_A          113 LLVANLPYHI  122 (271)
T ss_dssp             EEEEEECSSC
T ss_pred             EEEecCcccc
Confidence            9888866554

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=98.33  E-value=1.7e-06  Score=79.42  Aligned_cols=111  Identities=9%  Similarity=-0.014  Sum_probs=77.9

Q ss_pred             CCCCEEEEEcCcccHHHHHhc---cceEEEeccC--------CCCcEEEccCCCCCCCCCCccEEEEcccccCCCHHHHH
Q 022592          140 SPSLVIADFGCGDARLAKSVK---NKVFSFDLVS--------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGINFPNYL  208 (294)
Q Consensus       140 ~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~--------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~~~~~~l  208 (294)
                      .++.++||+||++|.++..+.   ..|+|||+.+        +++.++.+|+.....+...||+|+|..+.   ++...+
T Consensus       210 ~~G~~vlDLGAaPGGWT~~l~~rg~~V~aVD~~~l~~~l~~~~~V~~~~~d~~~~~~~~~~~D~vvsDm~~---~p~~~~  286 (375)
T 4auk_A          210 ANGMWAVDLGACPGGWTYQLVKRNMWVYSVDNGPMAQSLMDTGQVTWLREDGFKFRPTRSNISWMVCDMVE---KPAKVA  286 (375)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTCEEEEECSSCCCHHHHTTTCEEEECSCTTTCCCCSSCEEEEEECCSS---CHHHHH
T ss_pred             CCCCEEEEeCcCCCHHHHHHHHCCCEEEEEEhhhcChhhccCCCeEEEeCccccccCCCCCcCEEEEcCCC---ChHHhH
Confidence            478899999999999999887   4899999887        57889999998877777889999997664   456666


Q ss_pred             HHHHHhcCcC---cEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeE
Q 022592          209 QEAQRVLKPS---GWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAP  253 (294)
Q Consensus       209 ~el~r~Lkpg---G~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~  253 (294)
                      ..+.++|..|   +.++...+...............+.+.|+..||..
T Consensus       287 ~l~~~wl~~~~~~~aI~~lKL~mk~~~~~l~~~~~~i~~~l~~~g~~~  334 (375)
T 4auk_A          287 ALMAQWLVNGWCRETIFNLKLPMKKRYEEVSHNLAYIQAQLDEHGINA  334 (375)
T ss_dssp             HHHHHHHHTTSCSEEEEEEECCSSSHHHHHHHHHHHHHHHHHHTTCCE
T ss_pred             HHHHHHHhccccceEEEEEEecccchHHHHHHHHHHHHHHHHhcCcch
Confidence            6666666554   55544443221100000012345667888899864

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=98.33  E-value=6.8e-07  Score=78.48  Aligned_cols=69  Identities=13%  Similarity=0.173  Sum_probs=53.6

Q ss_pred             HHHHHHHHhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccC-------------CCCcEEEccCCCCCCCC----
Q 022592          128 PVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS-------------NDPSVIACDMSNTPLNS----  187 (294)
Q Consensus       128 ~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~-------------~~~~~~~~d~~~lp~~~----  187 (294)
                      ..+.+++.+... ++.+|||||||+|.++..++   .+|+|+|+++             .++.++.+|+..+++++    
T Consensus        17 i~~~iv~~~~~~-~~~~VLEIG~G~G~lt~~La~~~~~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~   95 (255)
T 3tqs_A           17 VLQKIVSAIHPQ-KTDTLVEIGPGRGALTDYLLTECDNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQFDFSSVKTD   95 (255)
T ss_dssp             HHHHHHHHHCCC-TTCEEEEECCTTTTTHHHHTTTSSEEEEEECCHHHHHHHHHHHTTCTTEEEEESCTTTCCGGGSCCS
T ss_pred             HHHHHHHhcCCC-CcCEEEEEcccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHhhCCCcEEEEcchHhCCHHHhccC
Confidence            345566666554 66799999999999999987   4899999997             36789999999987653    


Q ss_pred             CCccEEEEccc
Q 022592          188 SSVDVAVFCLS  198 (294)
Q Consensus       188 ~~fD~Vi~~~~  198 (294)
                      +.|| |+++..
T Consensus        96 ~~~~-vv~NlP  105 (255)
T 3tqs_A           96 KPLR-VVGNLP  105 (255)
T ss_dssp             SCEE-EEEECC
T ss_pred             CCeE-EEecCC
Confidence            4688 566544

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=98.33  E-value=7e-07  Score=78.47  Aligned_cols=119  Identities=15%  Similarity=0.121  Sum_probs=78.5

Q ss_pred             CCCEEEEEcCcccHHHHHhc-----------------cceEEEeccC---------------------------------
Q 022592          141 PSLVIADFGCGDARLAKSVK-----------------NKVFSFDLVS---------------------------------  170 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~-----------------~~v~gvD~s~---------------------------------  170 (294)
                      +..+|||||+|+|..+..+.                 ..++++|..+                                 
T Consensus        60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g  139 (257)
T 2qy6_A           60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG  139 (257)
T ss_dssp             SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence            44689999999999655421                 2678898654                                 


Q ss_pred             ----------CCCcEEEccCCC-CCCCC----CCccEEEEccc-cc-CCC--HHHHHHHHHHhcCcCcEEEEEeecCCCC
Q 022592          171 ----------NDPSVIACDMSN-TPLNS----SSVDVAVFCLS-LM-GIN--FPNYLQEAQRVLKPSGWLLIAEVKSRFD  231 (294)
Q Consensus       171 ----------~~~~~~~~d~~~-lp~~~----~~fD~Vi~~~~-l~-~~~--~~~~l~el~r~LkpgG~l~i~e~~~~~~  231 (294)
                                .++.++.+|+.+ ++.-+    ..||+|+.... -. +.+  ...++..++++|+|||.|+...      
T Consensus       140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~tys------  213 (257)
T 2qy6_A          140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFT------  213 (257)
T ss_dssp             EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEESC------
T ss_pred             hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEEEe------
Confidence                      123456677655 44222    27999998532 11 111  3579999999999999988632      


Q ss_pred             CCCCCCCHHHHHHHHHHCCCeEEEEeccCCeEEEEEEEEC
Q 022592          232 PNTGGADPNKFSKAVCDLGFAPVSKDFSNKMFIMFYFKKK  271 (294)
Q Consensus       232 ~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~f~~i~~~k~  271 (294)
                            ....+...|..+||.+.........-.++...+.
T Consensus       214 ------aa~~vrr~L~~aGF~v~~~~g~~~kr~m~~a~~~  247 (257)
T 2qy6_A          214 ------SAGFVRRGLQEAGFTMQKRKGFGRKREMLCGVME  247 (257)
T ss_dssp             ------CBHHHHHHHHHHTEEEEEECCSTTCCCEEEEEEC
T ss_pred             ------CCHHHHHHHHHCCCEEEeCCCCCCCCceEEEEec
Confidence                  1257888899999998875543333345555554

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=98.31  E-value=1.3e-06  Score=69.62  Aligned_cols=97  Identities=9%  Similarity=0.176  Sum_probs=66.3

Q ss_pred             HHHHHHhhcc-CCCCEEEEEcCccc-HHHHHhcc----ceEEEeccCCCCcEEEccCCCCCCCC-CCccEEEEcccccCC
Q 022592          130 NIIVKWLKDH-SPSLVIADFGCGDA-RLAKSVKN----KVFSFDLVSNDPSVIACDMSNTPLNS-SSVDVAVFCLSLMGI  202 (294)
Q Consensus       130 ~~~~~~l~~~-~~~~~VLDiGcG~G-~~~~~l~~----~v~gvD~s~~~~~~~~~d~~~lp~~~-~~fD~Vi~~~~l~~~  202 (294)
                      +.+.+++... .++.+|||||||+| ..+..|+.    .|+++|+++..+.+++.|+.+..+.. ..||+|.+...  -.
T Consensus        23 e~LaeYI~~~~~~~~rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~Av~~v~dDiF~P~~~~Y~~~DLIYsirP--P~  100 (153)
T 2k4m_A           23 NDLAVYIIRCSGPGTRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSHGGIVRDDITSPRMEIYRGAALIYSIRP--PA  100 (153)
T ss_dssp             HHHHHHHHHHSCSSSEEEEETCTTCCHHHHHHHHHSCCEEEEECSSCSSTTEECCCSSSCCHHHHTTEEEEEEESC--CT
T ss_pred             HHHHHHHHhcCCCCCcEEEEccCCChHHHHHHHHhCCCeEEEEECCccccceEEccCCCCcccccCCcCEEEEcCC--CH
Confidence            3455555443 24569999999999 58888864    69999999998889999998843321 47999976532  12


Q ss_pred             CHHHHHHHHHHhcCcCcEEEEEeecCCC
Q 022592          203 NFPNYLQEAQRVLKPSGWLLIAEVKSRF  230 (294)
Q Consensus       203 ~~~~~l~el~r~LkpgG~l~i~e~~~~~  230 (294)
                      +....+.++++.  -|.-++|..+....
T Consensus       101 El~~~i~~lA~~--v~adliI~pL~~E~  126 (153)
T 2k4m_A          101 EIHSSLMRVADA--VGARLIIKPLTGED  126 (153)
T ss_dssp             TTHHHHHHHHHH--HTCEEEEECBTTBC
T ss_pred             HHHHHHHHHHHH--cCCCEEEEcCCCCc
Confidence            445555555543  36678887665544

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=98.30  E-value=2.5e-06  Score=76.96  Aligned_cols=109  Identities=15%  Similarity=0.140  Sum_probs=71.1

Q ss_pred             CCCCEEEEEcCcccHHHHHhc------cceEEEeccC---------------CCCcEEEccCCCCCCCC---CCccEEEE
Q 022592          140 SPSLVIADFGCGDARLAKSVK------NKVFSFDLVS---------------NDPSVIACDMSNTPLNS---SSVDVAVF  195 (294)
Q Consensus       140 ~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~---------------~~~~~~~~d~~~lp~~~---~~fD~Vi~  195 (294)
                      .++.+|||+|||+|..+..++      ..|+++|+++               .++.++.+|+..++...   .+||.|++
T Consensus       101 ~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~Vl~  180 (309)
T 2b9e_A          101 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILL  180 (309)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEEE
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCCCEEEE
Confidence            377899999999999887765      3799999997               36788899987765432   57999997


Q ss_pred             ccc------ccC-CC-----------H-------HHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHC-
Q 022592          196 CLS------LMG-IN-----------F-------PNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDL-  249 (294)
Q Consensus       196 ~~~------l~~-~~-----------~-------~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~-  249 (294)
                      ...      +.. .+           .       ..+|..+.++|+ ||.|+++...-...     -+.+.+..+|++. 
T Consensus       181 D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~~~~-----Ene~~v~~~l~~~~  254 (309)
T 2b9e_A          181 DPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSLCQE-----ENEDVVRDALQQNP  254 (309)
T ss_dssp             CCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCCCGG-----GTHHHHHHHHTTST
T ss_pred             cCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCCChH-----HhHHHHHHHHHhCC
Confidence            322      111 11           1       135777777786 99888865332111     1335566667665 


Q ss_pred             C-CeEE
Q 022592          250 G-FAPV  254 (294)
Q Consensus       250 G-f~~~  254 (294)
                      + |+++
T Consensus       255 ~~~~~~  260 (309)
T 2b9e_A          255 GAFRLA  260 (309)
T ss_dssp             TTEEEC
T ss_pred             CcEEEe
Confidence            3 5543

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=98.29  E-value=1.9e-06  Score=75.87  Aligned_cols=88  Identities=16%  Similarity=0.174  Sum_probs=61.1

Q ss_pred             CCCCEEEEEcCcccHHHHHhcc-----ceEEEeccCC-------------CCcEEEccCCCCCCCCCCccEEEEcccccC
Q 022592          140 SPSLVIADFGCGDARLAKSVKN-----KVFSFDLVSN-------------DPSVIACDMSNTPLNSSSVDVAVFCLSLMG  201 (294)
Q Consensus       140 ~~~~~VLDiGcG~G~~~~~l~~-----~v~gvD~s~~-------------~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~  201 (294)
                      .++.+|||||||+|.|+..++.     .|+|+|++..             ++..+..++....++...+|+|+|..+...
T Consensus        89 k~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~DvVLSDmApns  168 (282)
T 3gcz_A           89 KPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMRTTLGWNLIRFKDKTDVFNMEVIPGDTLLCDIGESS  168 (282)
T ss_dssp             CCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCGGGSCCCCCSEEEECCCCCC
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccccccCCCceEEeeCCcchhhcCCCCcCEEEecCccCC
Confidence            4667999999999999997762     6889999752             122233333333455688999999877761


Q ss_pred             ----CCH---HHHHHHHHHhcCcC--cEEEEEeec
Q 022592          202 ----INF---PNYLQEAQRVLKPS--GWLLIAEVK  227 (294)
Q Consensus       202 ----~~~---~~~l~el~r~Lkpg--G~l~i~e~~  227 (294)
                          .|-   ..++.-+.++|+||  |.|++--+.
T Consensus       169 G~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~  203 (282)
T 3gcz_A          169 PSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLC  203 (282)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESC
T ss_pred             CChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEec
Confidence                111   13466677999999  999995443

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=98.29  E-value=1.5e-06  Score=80.96  Aligned_cols=85  Identities=12%  Similarity=0.104  Sum_probs=64.3

Q ss_pred             CCCCEEEEEcCcccHHHHHhc---c----------------------------------------ceEEEeccC------
Q 022592          140 SPSLVIADFGCGDARLAKSVK---N----------------------------------------KVFSFDLVS------  170 (294)
Q Consensus       140 ~~~~~VLDiGcG~G~~~~~l~---~----------------------------------------~v~gvD~s~------  170 (294)
                      .++..|||++||+|.++..++   .                                        .|+|+|+++      
T Consensus       200 ~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~A  279 (393)
T 3k0b_A          200 HPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEIA  279 (393)
T ss_dssp             CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHH
T ss_pred             CCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHHH
Confidence            356789999999999877664   1                                        299999997      


Q ss_pred             ----------CCCcEEEccCCCCCCCCCCccEEEEcccccC-C----CHHHHHHHHHHhcCc--CcEEEEEe
Q 022592          171 ----------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMG-I----NFPNYLQEAQRVLKP--SGWLLIAE  225 (294)
Q Consensus       171 ----------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~-~----~~~~~l~el~r~Lkp--gG~l~i~e  225 (294)
                                ..+.+.++|+.+++.+ .+||+|+++..+.. .    +...+..++.++|++  ||.++++.
T Consensus       280 r~Na~~~gl~~~I~~~~~D~~~~~~~-~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit  350 (393)
T 3k0b_A          280 KQNAVEAGLGDLITFRQLQVADFQTE-DEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVYVLT  350 (393)
T ss_dssp             HHHHHHTTCTTCSEEEECCGGGCCCC-CCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEEEEE
T ss_pred             HHHHHHcCCCCceEEEECChHhCCCC-CCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEEEEEE
Confidence                      2578999999998765 58999999866543 1    234556666667766  88888865

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=98.27  E-value=1.4e-06  Score=84.40  Aligned_cols=144  Identities=12%  Similarity=0.110  Sum_probs=92.0

Q ss_pred             CCcHHHHHHHHhhccCCCCEEEEEcCcccHHHHHhc--------------------cceEEEeccC------------C-
Q 022592          125 PELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK--------------------NKVFSFDLVS------------N-  171 (294)
Q Consensus       125 ~~~~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~--------------------~~v~gvD~s~------------~-  171 (294)
                      |...+..+++.+... + .+|||.+||+|.++..+.                    ..++|+|+++            . 
T Consensus       230 P~~Vv~lmv~ll~p~-~-~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~g  307 (544)
T 3khk_A          230 PKSIVTLIVEMLEPY-K-GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRG  307 (544)
T ss_dssp             CHHHHHHHHHHHCCC-S-EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHhcC-C-CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhC
Confidence            344556666666543 3 399999999999876652                    2689999987            1 


Q ss_pred             ---CCcEEEccCCCCC-CCCCCccEEEEcccccCC------------------------------CHHHHHHHHHHhcCc
Q 022592          172 ---DPSVIACDMSNTP-LNSSSVDVAVFCLSLMGI------------------------------NFPNYLQEAQRVLKP  217 (294)
Q Consensus       172 ---~~~~~~~d~~~lp-~~~~~fD~Vi~~~~l~~~------------------------------~~~~~l~el~r~Lkp  217 (294)
                         ++.+..+|....+ ++...||+|+++..+...                              ....++..+.+.|+|
T Consensus       308 i~~~i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~  387 (544)
T 3khk_A          308 IDFNFGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAP  387 (544)
T ss_dssp             CCCBCCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEE
T ss_pred             CCcccceeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhcc
Confidence               2223667765443 456789999997665421                              012689999999999


Q ss_pred             CcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEEeccCC-------eEEEEEEEECC
Q 022592          218 SGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSKDFSNK-------MFIMFYFKKKE  272 (294)
Q Consensus       218 gG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~-------~f~~i~~~k~~  272 (294)
                      ||++.++.........  .-....+.+.|-+.+.-..-+.....       ...+++++|..
T Consensus       388 gGr~aiVlP~g~L~~~--~~~~~~iRk~Lle~~~l~aII~LP~~lF~~t~i~t~Ilvl~K~k  447 (544)
T 3khk_A          388 TGSMALLLANGSMSSN--TNNEGEIRKTLVEQDLVECMVALPGQLFTNTQIPACIWFLTKDK  447 (544)
T ss_dssp             EEEEEEEEETHHHHCC--GGGHHHHHHHHHHTTCEEEEEECCTTBCCSCSSCEEEEEEESCC
T ss_pred             CceEEEEecchhhhcC--cchHHHHHHHHHhCCcHhEEEECCCCCCCCCCCCeEEEEEecCC
Confidence            9999887644432211  01346788877777764333333333       34677777654

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=98.26  E-value=1.1e-06  Score=81.66  Aligned_cols=85  Identities=9%  Similarity=0.121  Sum_probs=65.5

Q ss_pred             CCCCEEEEEcCcccHHHHHhc-------------------------------------------cceEEEeccC------
Q 022592          140 SPSLVIADFGCGDARLAKSVK-------------------------------------------NKVFSFDLVS------  170 (294)
Q Consensus       140 ~~~~~VLDiGcG~G~~~~~l~-------------------------------------------~~v~gvD~s~------  170 (294)
                      .++..|||+|||+|.++..++                                           ..|+|+|+++      
T Consensus       194 ~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~A  273 (385)
T 3ldu_A          194 KAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDIA  273 (385)
T ss_dssp             CTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHHH
T ss_pred             CCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHHH
Confidence            356789999999999887664                                           1489999997      


Q ss_pred             ----------CCCcEEEccCCCCCCCCCCccEEEEcccccC-C----CHHHHHHHHHHhcCc--CcEEEEEe
Q 022592          171 ----------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMG-I----NFPNYLQEAQRVLKP--SGWLLIAE  225 (294)
Q Consensus       171 ----------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~-~----~~~~~l~el~r~Lkp--gG~l~i~e  225 (294)
                                ..+++.++|+.+++.+ .+||+|+++..+.. .    +...+..++.++|++  ||.+++..
T Consensus       274 r~Na~~~gl~~~i~~~~~D~~~l~~~-~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit  344 (385)
T 3ldu_A          274 RENAEIAGVDEYIEFNVGDATQFKSE-DEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYYLIT  344 (385)
T ss_dssp             HHHHHHHTCGGGEEEEECCGGGCCCS-CBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEEEEE
T ss_pred             HHHHHHcCCCCceEEEECChhhcCcC-CCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEEEEEE
Confidence                      2578999999988764 58999999877653 1    345666777777776  88888865

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=98.23  E-value=2.6e-06  Score=79.13  Aligned_cols=85  Identities=13%  Similarity=0.127  Sum_probs=65.7

Q ss_pred             CCCCEEEEEcCcccHHHHHhc---c----------------------------------------ceEEEeccC------
Q 022592          140 SPSLVIADFGCGDARLAKSVK---N----------------------------------------KVFSFDLVS------  170 (294)
Q Consensus       140 ~~~~~VLDiGcG~G~~~~~l~---~----------------------------------------~v~gvD~s~------  170 (294)
                      .++..|||.+||+|.++..++   .                                        .++|+|+++      
T Consensus       193 ~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~A  272 (384)
T 3ldg_A          193 FPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEIA  272 (384)
T ss_dssp             CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHH
T ss_pred             CCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHHH
Confidence            366789999999999887664   1                                        299999997      


Q ss_pred             ----------CCCcEEEccCCCCCCCCCCccEEEEcccccC-C----CHHHHHHHHHHhcCc--CcEEEEEe
Q 022592          171 ----------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMG-I----NFPNYLQEAQRVLKP--SGWLLIAE  225 (294)
Q Consensus       171 ----------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~-~----~~~~~l~el~r~Lkp--gG~l~i~e  225 (294)
                                ..+.+..+|+.+++.+ .+||+|+++..+.. .    +...+..++.+.|++  ||.++++.
T Consensus       273 r~Na~~~gl~~~I~~~~~D~~~l~~~-~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit  343 (384)
T 3ldg_A          273 RKNAREVGLEDVVKLKQMRLQDFKTN-KINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQFILT  343 (384)
T ss_dssp             HHHHHHTTCTTTEEEEECCGGGCCCC-CCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEEEEE
T ss_pred             HHHHHHcCCCCceEEEECChHHCCcc-CCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEEEEEE
Confidence                      2478999999988765 48999999866543 2    345667777777776  89888875

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=98.20  E-value=1e-06  Score=81.31  Aligned_cols=80  Identities=9%  Similarity=0.212  Sum_probs=59.3

Q ss_pred             CCEEEEEcCcccHHHHHhc---cceEEEeccC---------------CCCcEEEccCCCCC--CCC--------------
Q 022592          142 SLVIADFGCGDARLAKSVK---NKVFSFDLVS---------------NDPSVIACDMSNTP--LNS--------------  187 (294)
Q Consensus       142 ~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~---------------~~~~~~~~d~~~lp--~~~--------------  187 (294)
                      +.+|||+|||+|.++..++   ..|+|+|+++               .++.++.+|+..+.  +..              
T Consensus       214 ~~~vLDl~cG~G~~~l~la~~~~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~  293 (369)
T 3bt7_A          214 KGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKS  293 (369)
T ss_dssp             CSEEEEESCTTSHHHHHHGGGSSEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSCGGG
T ss_pred             CCEEEEccCCCCHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhcccccccccccccc
Confidence            4689999999999999887   4799999997               35778888886642  221              


Q ss_pred             CCccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEee
Q 022592          188 SSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEV  226 (294)
Q Consensus       188 ~~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e~  226 (294)
                      .+||+|++...-.     .+..++.++|+++|.++++..
T Consensus       294 ~~fD~Vv~dPPr~-----g~~~~~~~~l~~~g~ivyvsc  327 (369)
T 3bt7_A          294 YQCETIFVDPPRS-----GLDSETEKMVQAYPRILYISC  327 (369)
T ss_dssp             CCEEEEEECCCTT-----CCCHHHHHHHTTSSEEEEEES
T ss_pred             CCCCEEEECcCcc-----ccHHHHHHHHhCCCEEEEEEC
Confidence            3799998753321     234567777889998888764

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=98.16  E-value=1.7e-05  Score=70.40  Aligned_cols=95  Identities=9%  Similarity=0.035  Sum_probs=63.2

Q ss_pred             HHHHHhhccCCCCEEEEEcCcccHHHHHhcc-----ceEEEeccCC-------------CCcEEEccCCCCCCCCCCccE
Q 022592          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVKN-----KVFSFDLVSN-------------DPSVIACDMSNTPLNSSSVDV  192 (294)
Q Consensus       131 ~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~~-----~v~gvD~s~~-------------~~~~~~~d~~~lp~~~~~fD~  192 (294)
                      .+.+. ....++.+||||||++|.|+..++.     .|+|+|++..             ++.....++.-..+..+.+|+
T Consensus        72 ei~ek-~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~~~~~~~~iv~~~~~~di~~l~~~~~Dl  150 (300)
T 3eld_A           72 WLHER-GYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIHMQTLGWNIVKFKDKSNVFTMPTEPSDT  150 (300)
T ss_dssp             HHHHH-TSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSE
T ss_pred             HHHHh-CCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccccccccccccccCCceEEeecCceeeecCCCCcCE
Confidence            34444 3335778999999999999998874     5788998742             111222222223345678999


Q ss_pred             EEEcccccCC-----CH---HHHHHHHHHhcCcC-cEEEEEeec
Q 022592          193 AVFCLSLMGI-----NF---PNYLQEAQRVLKPS-GWLLIAEVK  227 (294)
Q Consensus       193 Vi~~~~l~~~-----~~---~~~l~el~r~Lkpg-G~l~i~e~~  227 (294)
                      |+|..+-. .     |-   ..++.-+.++|+|| |.|++--+.
T Consensus       151 VlsD~APn-sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~  193 (300)
T 3eld_A          151 LLCDIGES-SSNPLVERDRTMKVLENFERWKHVNTENFCVKVLA  193 (300)
T ss_dssp             EEECCCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESS
T ss_pred             EeecCcCC-CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecc
Confidence            99977665 2     11   23466678999999 999996443

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.13  E-value=6.3e-06  Score=71.95  Aligned_cols=70  Identities=23%  Similarity=0.221  Sum_probs=50.8

Q ss_pred             HHHHHHHHhhccCCCCEEEEEcCcccHHHHHhc----cceEEEeccC-----------CCCcEEEccCCCCCCCCCC-cc
Q 022592          128 PVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS-----------NDPSVIACDMSNTPLNSSS-VD  191 (294)
Q Consensus       128 ~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~-----------~~~~~~~~d~~~lp~~~~~-fD  191 (294)
                      ..+.+++.+... ++.+|||||||+|.++..++    .+|+|+|+++           .++.++.+|+..+++++.. ..
T Consensus        19 i~~~iv~~~~~~-~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~   97 (249)
T 3ftd_A           19 VLKKIAEELNIE-EGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSIGDERLEVINEDASKFPFCSLGKEL   97 (249)
T ss_dssp             HHHHHHHHTTCC-TTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTSCCTTEEEECSCTTTCCGGGSCSSE
T ss_pred             HHHHHHHhcCCC-CcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhccCCCeEEEEcchhhCChhHccCCc
Confidence            345566666544 56799999999999999886    3799999987           2568899999998876421 22


Q ss_pred             EEEEccc
Q 022592          192 VAVFCLS  198 (294)
Q Consensus       192 ~Vi~~~~  198 (294)
                      .|+++..
T Consensus        98 ~vv~NlP  104 (249)
T 3ftd_A           98 KVVGNLP  104 (249)
T ss_dssp             EEEEECC
T ss_pred             EEEEECc
Confidence            4454443

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=98.08  E-value=5.9e-07  Score=78.99  Aligned_cols=61  Identities=13%  Similarity=0.059  Sum_probs=48.3

Q ss_pred             CCCEEEEEcCcccHHHHHhc---cceEEEeccC-----------------------CCCcEEEccCCCC-C-CCC--CCc
Q 022592          141 PSLVIADFGCGDARLAKSVK---NKVFSFDLVS-----------------------NDPSVIACDMSNT-P-LNS--SSV  190 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~-----------------------~~~~~~~~d~~~l-p-~~~--~~f  190 (294)
                      ++.+|||+|||+|.++..++   ..|+|+|+++                       .++.++.+|+..+ + +++  ++|
T Consensus        83 ~~~~VLDlgcG~G~~a~~lA~~g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~~~~f  162 (258)
T 2r6z_A           83 AHPTVWDATAGLGRDSFVLASLGLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKTQGKP  162 (258)
T ss_dssp             GCCCEEETTCTTCHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHHHCCC
T ss_pred             CcCeEEEeeCccCHHHHHHHHhCCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhccCCCc
Confidence            45789999999999998887   4899999998                       2378899998763 3 444  689


Q ss_pred             cEEEEcccccC
Q 022592          191 DVAVFCLSLMG  201 (294)
Q Consensus       191 D~Vi~~~~l~~  201 (294)
                      |+|++...+.+
T Consensus       163 D~V~~dP~~~~  173 (258)
T 2r6z_A          163 DIVYLDPMYPE  173 (258)
T ss_dssp             SEEEECCCC--
T ss_pred             cEEEECCCCCC
Confidence            99999877665

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=98.06  E-value=1.5e-05  Score=77.27  Aligned_cols=144  Identities=14%  Similarity=0.126  Sum_probs=93.7

Q ss_pred             CCcHHHHHHHHhhc---cCCCCEEEEEcCcccHHHHHhc--------cceEEEeccC------------C-----CCcEE
Q 022592          125 PELPVNIIVKWLKD---HSPSLVIADFGCGDARLAKSVK--------NKVFSFDLVS------------N-----DPSVI  176 (294)
Q Consensus       125 ~~~~~~~~~~~l~~---~~~~~~VLDiGcG~G~~~~~l~--------~~v~gvD~s~------------~-----~~~~~  176 (294)
                      |...+..+++.+..   ..++.+|||.+||+|.++..+.        ..++|+|+++            .     ++.+.
T Consensus       202 P~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~  281 (542)
T 3lkd_A          202 PQPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLH  281 (542)
T ss_dssp             CHHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEE
T ss_pred             cHHHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceE
Confidence            34455666676663   2256799999999999877653        3689999987            1     34578


Q ss_pred             EccCCCC--C-CCCCCccEEEEcccccC--C-------C---------------HHHHHHHHHHhcC-cCcEEEEEeecC
Q 022592          177 ACDMSNT--P-LNSSSVDVAVFCLSLMG--I-------N---------------FPNYLQEAQRVLK-PSGWLLIAEVKS  228 (294)
Q Consensus       177 ~~d~~~l--p-~~~~~fD~Vi~~~~l~~--~-------~---------------~~~~l~el~r~Lk-pgG~l~i~e~~~  228 (294)
                      .+|....  | .....||+|+++..+..  .       +               ...++..+.+.|+ |||++.++...+
T Consensus       282 ~gDtL~~d~p~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP~g  361 (542)
T 3lkd_A          282 NADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLPHG  361 (542)
T ss_dssp             ESCTTTSCSCCSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEETH
T ss_pred             ecceecccccccccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEecch
Confidence            8888765  3 34678999998755431  0       0               1248999999999 999998876554


Q ss_pred             CCCCCCCCCCHHHHHHHHHHCCCeEEEEeccC-------CeEEEEEEEEC
Q 022592          229 RFDPNTGGADPNKFSKAVCDLGFAPVSKDFSN-------KMFIMFYFKKK  271 (294)
Q Consensus       229 ~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~-------~~f~~i~~~k~  271 (294)
                      .....   -....+.+.|-+.+.-..-+....       ..-.+++++|.
T Consensus       362 ~Lf~~---~~~~~iRk~Lle~~~l~~II~LP~~lF~~t~i~t~Ilvl~K~  408 (542)
T 3lkd_A          362 VLFRG---NAEGTIRKALLEEGAIDTVIGLPANIFFNTSIPTTVIILKKN  408 (542)
T ss_dssp             HHHCC---THHHHHHHHHHHTTCEEEEEECCSSCSSSCCCCEEEEEECSS
T ss_pred             HhhCC---chhHHHHHHHHhCCceeEEEEccccccCCCCCcEEEEEEecC
Confidence            33211   123668777777665333333322       22356666664

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=98.02  E-value=2.2e-06  Score=79.71  Aligned_cols=82  Identities=12%  Similarity=0.014  Sum_probs=62.6

Q ss_pred             CCCEEEEEcCcccHHHHHhc------cceEEEeccC---------------CC--CcEEEccCCCCC--CCCCCccEEEE
Q 022592          141 PSLVIADFGCGDARLAKSVK------NKVFSFDLVS---------------ND--PSVIACDMSNTP--LNSSSVDVAVF  195 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~---------------~~--~~~~~~d~~~lp--~~~~~fD~Vi~  195 (294)
                      ++.+|||++||+|.++..++      ..|+++|+++               .+  +.++.+|+..+.  ...+.||+|++
T Consensus        52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~l  131 (392)
T 3axs_A           52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDL  131 (392)
T ss_dssp             SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEE
T ss_pred             CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEE
Confidence            56799999999999988765      3689999997               22  678888875531  12457999998


Q ss_pred             cccccCCCHHHHHHHHHHhcCcCcEEEEEe
Q 022592          196 CLSLMGINFPNYLQEAQRVLKPSGWLLIAE  225 (294)
Q Consensus       196 ~~~l~~~~~~~~l~el~r~LkpgG~l~i~e  225 (294)
                      ..   +-....++..+.++|+|||+|+++-
T Consensus       132 DP---~g~~~~~l~~a~~~Lk~gGll~~t~  158 (392)
T 3axs_A          132 DP---FGTPVPFIESVALSMKRGGILSLTA  158 (392)
T ss_dssp             CC---SSCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CC---CcCHHHHHHHHHHHhCCCCEEEEEe
Confidence            76   2234578999999999999888863

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=97.98  E-value=6e-06  Score=73.38  Aligned_cols=58  Identities=17%  Similarity=0.177  Sum_probs=46.2

Q ss_pred             HHHHHHHhhccCCCCEEEEEcCcccHHHHHhc---cc----eEEEeccC-----------CCCcEEEccCCCCCCCC
Q 022592          129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NK----VFSFDLVS-----------NDPSVIACDMSNTPLNS  187 (294)
Q Consensus       129 ~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~----v~gvD~s~-----------~~~~~~~~d~~~lp~~~  187 (294)
                      .+.+++.+... ++.+|||||||+|.++..++   ..    |+|+|+++           .++.++.+|+..+++++
T Consensus        31 ~~~iv~~~~~~-~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~~~~v~~i~~D~~~~~~~~  106 (279)
T 3uzu_A           31 IDAIVAAIRPE-RGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRFGELLELHAGDALTFDFGS  106 (279)
T ss_dssp             HHHHHHHHCCC-TTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHHGGGEEEEESCGGGCCGGG
T ss_pred             HHHHHHhcCCC-CcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhcCCCcEEEECChhcCChhH
Confidence            45566666544 66799999999999999887   35    99999997           36789999999888654

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=97.97  E-value=2.3e-06  Score=75.17  Aligned_cols=89  Identities=11%  Similarity=-0.004  Sum_probs=59.6

Q ss_pred             HHHHHHhhccCCC--CEEEEEcCcccHHHHHhc---cceEEEeccC------------------------CCCcEEEccC
Q 022592          130 NIIVKWLKDHSPS--LVIADFGCGDARLAKSVK---NKVFSFDLVS------------------------NDPSVIACDM  180 (294)
Q Consensus       130 ~~~~~~l~~~~~~--~~VLDiGcG~G~~~~~l~---~~v~gvD~s~------------------------~~~~~~~~d~  180 (294)
                      +.+++.+... ++  .+|||+|||+|.++..++   ..|+++|+++                        .+++++.+|+
T Consensus        76 e~l~~al~l~-~g~~~~VLDl~~G~G~dal~lA~~g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~  154 (258)
T 2oyr_A           76 EAVAKAVGIK-GDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS  154 (258)
T ss_dssp             SHHHHHTTCB-TTBCCCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCH
T ss_pred             HHHHHHhccc-CCCCCEEEEcCCcCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCH
Confidence            3355555433 45  799999999999998887   4899999997                        1356888887


Q ss_pred             CC-CCCCCCCccEEEEcccccCCCHHHHHHHHHHhcCcCc
Q 022592          181 SN-TPLNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPSG  219 (294)
Q Consensus       181 ~~-lp~~~~~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG  219 (294)
                      .. ++...++||+|++...+.+.....++.+..++|++.+
T Consensus       155 ~~~L~~~~~~fDvV~lDP~y~~~~~saavkk~~~~lr~l~  194 (258)
T 2oyr_A          155 LTALTDITPRPQVVYLDPMFPHKQKSALVKKEMRVFQSLV  194 (258)
T ss_dssp             HHHSTTCSSCCSEEEECCCCCCCCC-----HHHHHHHHHS
T ss_pred             HHHHHhCcccCCEEEEcCCCCCcccchHHHHHHHHHHHhh
Confidence            65 3322246999999888766433355566666666644

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=97.96  E-value=2.6e-06  Score=74.56  Aligned_cols=70  Identities=13%  Similarity=0.072  Sum_probs=51.4

Q ss_pred             HHHHHHHhhccCCCCEEEEEcCcccHHHHHhc--cc--eEEEeccC-------------CCCcEEEccCCCCCCCCC---
Q 022592          129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK--NK--VFSFDLVS-------------NDPSVIACDMSNTPLNSS---  188 (294)
Q Consensus       129 ~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~--~~--v~gvD~s~-------------~~~~~~~~d~~~lp~~~~---  188 (294)
                      +..+++.+... ++.+|||||||+|.++. +.  ..  |+|+|+++             .++.++.+|+..+++++.   
T Consensus        10 ~~~iv~~~~~~-~~~~VLEIG~G~G~lt~-l~~~~~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~~~~~~~~~~   87 (252)
T 1qyr_A           10 IDSIVSAINPQ-KGQAMVEIGPGLAALTE-PVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELAEK   87 (252)
T ss_dssp             HHHHHHHHCCC-TTCCEEEECCTTTTTHH-HHHTTCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHHHHHHH
T ss_pred             HHHHHHhcCCC-CcCEEEEECCCCcHHHH-hhhCCCCeEEEEECCHHHHHHHHHHhccCCceEEEECchhhCCHHHhhcc
Confidence            45566666543 66789999999999998 65  36  99999997             257889999988876432   


Q ss_pred             --CccEEEEccccc
Q 022592          189 --SVDVAVFCLSLM  200 (294)
Q Consensus       189 --~fD~Vi~~~~l~  200 (294)
                        ..|.|+++....
T Consensus        88 ~~~~~~vvsNlPY~  101 (252)
T 1qyr_A           88 MGQPLRVFGNLPYN  101 (252)
T ss_dssp             HTSCEEEEEECCTT
T ss_pred             cCCceEEEECCCCC
Confidence              346777775543

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=97.94  E-value=2.7e-06  Score=78.86  Aligned_cols=81  Identities=14%  Similarity=0.015  Sum_probs=60.5

Q ss_pred             CCCEEEEEcCcccHHHHHhc-----cceEEEeccC------------C---------------C---CcEEEccCCCCCC
Q 022592          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS------------N---------------D---PSVIACDMSNTPL  185 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~------------~---------------~---~~~~~~d~~~lp~  185 (294)
                      ++.+|||+|||+|.++..++     ..|+++|+++            .               .   +.++.+|+..+..
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~  126 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA  126 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred             CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence            46799999999999988775     2699999987            1               2   4566777755321


Q ss_pred             -CCCCccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEE
Q 022592          186 -NSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIA  224 (294)
Q Consensus       186 -~~~~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~  224 (294)
                       ..+.||+|++..   ......++..+.+.|+|||.++++
T Consensus       127 ~~~~~fD~I~lDP---~~~~~~~l~~a~~~lk~gG~l~vt  163 (378)
T 2dul_A          127 ERHRYFHFIDLDP---FGSPMEFLDTALRSAKRRGILGVT  163 (378)
T ss_dssp             HSTTCEEEEEECC---SSCCHHHHHHHHHHEEEEEEEEEE
T ss_pred             hccCCCCEEEeCC---CCCHHHHHHHHHHhcCCCCEEEEE
Confidence             135799999643   124578899999999999988876

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=97.90  E-value=5.7e-05  Score=64.78  Aligned_cols=82  Identities=16%  Similarity=0.159  Sum_probs=60.3

Q ss_pred             CCCCEEEEEcCcccHHHHHhc-----cceEEEeccCC--------------CCcEEEc-cCCCCCCCCCCccEEEEcccc
Q 022592          140 SPSLVIADFGCGDARLAKSVK-----NKVFSFDLVSN--------------DPSVIAC-DMSNTPLNSSSVDVAVFCLSL  199 (294)
Q Consensus       140 ~~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~~--------------~~~~~~~-d~~~lp~~~~~fD~Vi~~~~l  199 (294)
                      .++..||||||++|.++..++     ..|+|+|+...              .+.|..+ |+..++-  ..+|.|+|.-.=
T Consensus        77 ~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~~~s~gwn~v~fk~gvDv~~~~~--~~~DtllcDIge  154 (267)
T 3p8z_A           77 IPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMSTYGWNIVKLMSGKDVFYLPP--EKCDTLLCDIGE  154 (267)
T ss_dssp             CCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCCTTTTSEEEECSCCGGGCCC--CCCSEEEECCCC
T ss_pred             CCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcchhhhcCcCceEEEeccceeecCC--ccccEEEEecCC
Confidence            467799999999999999776     37999999872              4567777 8765543  669999987655


Q ss_pred             cCCCHH-------HHHHHHHHhcCcCcEEEEE
Q 022592          200 MGINFP-------NYLQEAQRVLKPSGWLLIA  224 (294)
Q Consensus       200 ~~~~~~-------~~l~el~r~LkpgG~l~i~  224 (294)
                      ...++.       .+|.-+.++|++ |.++|=
T Consensus       155 Ss~~~~vE~~RtlrvLela~~wL~~-~~fc~K  185 (267)
T 3p8z_A          155 SSPSPTVEESRTIRVLKMVEPWLKN-NQFCIK  185 (267)
T ss_dssp             CCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEE
T ss_pred             CCCChhhhhhHHHHHHHHHHHhccc-CCEEEE
Confidence            433321       366666789998 777773

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=97.89  E-value=5.9e-06  Score=74.20  Aligned_cols=69  Identities=19%  Similarity=0.328  Sum_probs=53.2

Q ss_pred             HHHHHHHhhccCCCCEEEEEcCcccHHHHHhc-----cceEEEeccC--------------CCCcEEEccCCCCC--CC-
Q 022592          129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS--------------NDPSVIACDMSNTP--LN-  186 (294)
Q Consensus       129 ~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~--------------~~~~~~~~d~~~lp--~~-  186 (294)
                      ++.+++.+... ++.+|||+|||+|.++..++     ..|+|+|+++              .++.++.+|+..++  +. 
T Consensus        15 l~e~l~~L~~~-~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~~l~~   93 (301)
T 1m6y_A           15 VREVIEFLKPE-DEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKT   93 (301)
T ss_dssp             HHHHHHHHCCC-TTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHH
T ss_pred             HHHHHHhcCCC-CCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHh
Confidence            45667777654 66799999999999988776     3799999997              26789999988765  22 


Q ss_pred             --CCCccEEEEccc
Q 022592          187 --SSSVDVAVFCLS  198 (294)
Q Consensus       187 --~~~fD~Vi~~~~  198 (294)
                        ..+||.|++...
T Consensus        94 ~g~~~~D~Vl~D~g  107 (301)
T 1m6y_A           94 LGIEKVDGILMDLG  107 (301)
T ss_dssp             TTCSCEEEEEEECS
T ss_pred             cCCCCCCEEEEcCc
Confidence              157999998654

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=97.85  E-value=0.0002  Score=62.20  Aligned_cols=86  Identities=15%  Similarity=0.086  Sum_probs=57.8

Q ss_pred             CCCCEEEEEcCcccHHHHHhccc--e-------EEEe--ccC-----CCCcEEE---c-cCCCCCCCCCCccEEEEcccc
Q 022592          140 SPSLVIADFGCGDARLAKSVKNK--V-------FSFD--LVS-----NDPSVIA---C-DMSNTPLNSSSVDVAVFCLSL  199 (294)
Q Consensus       140 ~~~~~VLDiGcG~G~~~~~l~~~--v-------~gvD--~s~-----~~~~~~~---~-d~~~lp~~~~~fD~Vi~~~~l  199 (294)
                      .|+.+|||+||++|.|++.++..  |       +|+|  +.+     ..+.++.   + |+..++  ...+|+|+|..+-
T Consensus        72 kpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~~~~~~Gv~~i~~~~G~Df~~~~--~~~~DvVLSDMAP  149 (269)
T 2px2_A           72 QPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPMLMQSYGWNIVTMKSGVDVFYKP--SEISDTLLCDIGE  149 (269)
T ss_dssp             CCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCGGGSC--CCCCSEEEECCCC
T ss_pred             CCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCCcccCCCceEEEeeccCCccCCC--CCCCCEEEeCCCC
Confidence            57889999999999999998743  3       3445  222     1334444   5 887743  4579999987654


Q ss_pred             cCC----CHH---HHHHHHHHhcCcCc-EEEEEeec
Q 022592          200 MGI----NFP---NYLQEAQRVLKPSG-WLLIAEVK  227 (294)
Q Consensus       200 ~~~----~~~---~~l~el~r~LkpgG-~l~i~e~~  227 (294)
                      ..-    |-.   .+|.-+.++|+||| .|++=-+.
T Consensus       150 nSG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFq  185 (269)
T 2px2_A          150 SSPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILC  185 (269)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred             CCCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECC
Confidence            421    211   35666779999999 88885444

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=97.84  E-value=0.00014  Score=64.33  Aligned_cols=82  Identities=13%  Similarity=0.179  Sum_probs=60.3

Q ss_pred             CCCCEEEEEcCcccHHHHHhc-----cceEEEeccCC-------------C-CcEEEc-cCCCCCCCCCCccEEEEcccc
Q 022592          140 SPSLVIADFGCGDARLAKSVK-----NKVFSFDLVSN-------------D-PSVIAC-DMSNTPLNSSSVDVAVFCLSL  199 (294)
Q Consensus       140 ~~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~~-------------~-~~~~~~-d~~~lp~~~~~fD~Vi~~~~l  199 (294)
                      .++..||||||++|.++..++     ..|+|+|+...             + +.+..+ |+..++.  ..+|+|+|.-. 
T Consensus        93 ~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv~~l~~--~~~D~ivcDig-  169 (321)
T 3lkz_A           93 EPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDVFYRPS--ECCDTLLCDIG-  169 (321)
T ss_dssp             CCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCBTTGGGEEEECSCCTTSSCC--CCCSEEEECCC-
T ss_pred             CCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhhcCCcceEEEeccCHhhCCC--CCCCEEEEECc-
Confidence            466799999999999999776     37999999875             2 234444 7766654  56999999877 


Q ss_pred             cC-CCHH-------HHHHHHHHhcCcC-cEEEEE
Q 022592          200 MG-INFP-------NYLQEAQRVLKPS-GWLLIA  224 (294)
Q Consensus       200 ~~-~~~~-------~~l~el~r~Lkpg-G~l~i~  224 (294)
                      +- .++.       .+|.-+.++|++| |-++|=
T Consensus       170 eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~K  203 (321)
T 3lkz_A          170 ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVK  203 (321)
T ss_dssp             CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred             cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEE
Confidence            43 3321       3666678999999 877773

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=97.84  E-value=4.3e-05  Score=68.15  Aligned_cols=126  Identities=12%  Similarity=0.163  Sum_probs=83.6

Q ss_pred             CCCEEEEEcCcccHHHHHhc-----cceEEEeccC--------------------CCCcEEEccCCC-CCCCCCCccEEE
Q 022592          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS--------------------NDPSVIACDMSN-TPLNSSSVDVAV  194 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~--------------------~~~~~~~~d~~~-lp~~~~~fD~Vi  194 (294)
                      ...+||=||.|.|..+..+.     .+|+.||+.+                    ++++++.+|... +.-..++||+|+
T Consensus        83 ~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvIi  162 (294)
T 3o4f_A           83 HAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVII  162 (294)
T ss_dssp             CCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEEE
T ss_pred             CCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEEE
Confidence            44699999999999998886     3788999876                    467889999876 344567899999


Q ss_pred             EcccccC-----CCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEEe------ccCCeE
Q 022592          195 FCLSLMG-----INFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSKD------FSNKMF  263 (294)
Q Consensus       195 ~~~~l~~-----~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~------~~~~~f  263 (294)
                      ....-..     .--..+++.+.++|+|||+++.-.-...+..    -....+.+.+.+. |..+...      +....+
T Consensus       163 ~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~sp~~~~----~~~~~~~~~l~~~-F~~v~~~~~~vPty~~g~w  237 (294)
T 3o4f_A          163 SDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNGVCFLQQ----EEAIDSHRKLSHY-FSDVGFYQAAIPTYYGGIM  237 (294)
T ss_dssp             ESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEEEESSSCC----HHHHHHHHHHHHH-CSEEEEEEECCTTSSSSCE
T ss_pred             EeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEecCCcccCh----HHHHHHHHHHHhh-CCceeeeeeeeccCCCcce
Confidence            7644221     1235799999999999999988432222221    0122334445554 6555522      123556


Q ss_pred             EEEEEEEC
Q 022592          264 IMFYFKKK  271 (294)
Q Consensus       264 ~~i~~~k~  271 (294)
                      .++.+.+.
T Consensus       238 ~f~~as~~  245 (294)
T 3o4f_A          238 TFAWATDN  245 (294)
T ss_dssp             EEEEEESC
T ss_pred             eheeEECC
Confidence            77777664

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=97.76  E-value=4.8e-05  Score=75.93  Aligned_cols=84  Identities=12%  Similarity=0.063  Sum_probs=60.3

Q ss_pred             CCCEEEEEcCcccHHHHHhc-----------------------------------------------cceEEEeccC---
Q 022592          141 PSLVIADFGCGDARLAKSVK-----------------------------------------------NKVFSFDLVS---  170 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~-----------------------------------------------~~v~gvD~s~---  170 (294)
                      ++..|||.+||+|.++..++                                               ..++|+|+++   
T Consensus       190 ~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~av  269 (703)
T 3v97_A          190 PGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARVI  269 (703)
T ss_dssp             TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHHHH
T ss_pred             CCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHHHH
Confidence            56789999999999876543                                               2589999998   


Q ss_pred             -------------CCCcEEEccCCCC--CCCCCCccEEEEcccccC-C----CHHHHHH---HHHHhcCcCcEEEEE
Q 022592          171 -------------NDPSVIACDMSNT--PLNSSSVDVAVFCLSLMG-I----NFPNYLQ---EAQRVLKPSGWLLIA  224 (294)
Q Consensus       171 -------------~~~~~~~~d~~~l--p~~~~~fD~Vi~~~~l~~-~----~~~~~l~---el~r~LkpgG~l~i~  224 (294)
                                   ..+.+..+|+.++  |...++||+|+++..+.. .    +...+.+   ++.+.+.|||.+++.
T Consensus       270 ~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~~~~g~~~~il  346 (703)
T 3v97_A          270 QRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQFGGWNLSLF  346 (703)
T ss_dssp             HHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred             HHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHhhCCCCeEEEE
Confidence                         2368899999876  333448999999866543 1    2333444   444555689999986

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=97.55  E-value=0.0002  Score=71.67  Aligned_cols=108  Identities=14%  Similarity=0.178  Sum_probs=69.9

Q ss_pred             CCCEEEEEcCcccHHHHHhc--------cceEEEeccCCCC---------------------cEEEccCCCC-CCCCCCc
Q 022592          141 PSLVIADFGCGDARLAKSVK--------NKVFSFDLVSNDP---------------------SVIACDMSNT-PLNSSSV  190 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~--------~~v~gvD~s~~~~---------------------~~~~~d~~~l-p~~~~~f  190 (294)
                      ++.+|||.|||+|.++..++        ..++|+|+++..+                     .+...|+... +.....|
T Consensus       321 ~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~kF  400 (878)
T 3s1s_A          321 EDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFANV  400 (878)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTTE
T ss_pred             CCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCCC
Confidence            46799999999999888765        2589999987311                     2333344332 2335689


Q ss_pred             cEEEEcccccC--CC----------------------------HHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHH
Q 022592          191 DVAVFCLSLMG--IN----------------------------FPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPN  240 (294)
Q Consensus       191 D~Vi~~~~l~~--~~----------------------------~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~  240 (294)
                      |+|+++..+..  ..                            ...++..+.++|+|||++.++-..+......  -...
T Consensus       401 DVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~s~Lf~sg--~~~k  478 (878)
T 3s1s_A          401 SVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPKQYLTAQG--NESK  478 (878)
T ss_dssp             EEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEETHHHHCCS--HHHH
T ss_pred             CEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEChHHhccCC--hHHH
Confidence            99999877632  10                            2246888999999999999986554432100  0135


Q ss_pred             HHHHHHHHCC
Q 022592          241 KFSKAVCDLG  250 (294)
Q Consensus       241 ~~~~~l~~~G  250 (294)
                      .+.+.|-+.+
T Consensus       479 kLRk~LLe~~  488 (878)
T 3s1s_A          479 AFREFLVGNF  488 (878)
T ss_dssp             HHHHHHTTTT
T ss_pred             HHHHHHHhCC
Confidence            6766665543

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=97.49  E-value=0.0003  Score=62.43  Aligned_cols=117  Identities=9%  Similarity=0.042  Sum_probs=78.5

Q ss_pred             HHHHhhccCCCCEEEEEcCcccHHHHHhc----------cceEEEeccC-------------------------------
Q 022592          132 IVKWLKDHSPSLVIADFGCGDARLAKSVK----------NKVFSFDLVS-------------------------------  170 (294)
Q Consensus       132 ~~~~l~~~~~~~~VLDiGcG~G~~~~~l~----------~~v~gvD~s~-------------------------------  170 (294)
                      ++..+........|||+|+..|..+..++          .+++++|...                               
T Consensus        97 l~~~v~~~~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~  176 (282)
T 2wk1_A           97 CVEDVIGNNVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEE  176 (282)
T ss_dssp             HHHHHHHTTCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHH
T ss_pred             HHHHHHhcCCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHH
Confidence            44444433344599999999999776553          3689999531                               


Q ss_pred             ------------CCCcEEEccCCC-CC-CCCCCccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCC
Q 022592          171 ------------NDPSVIACDMSN-TP-LNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGG  236 (294)
Q Consensus       171 ------------~~~~~~~~d~~~-lp-~~~~~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~  236 (294)
                                  +++.++.+|+.+ +| ++.++||+|+.-... +.....++..+...|+|||++++-++. .+ +   +
T Consensus       177 ar~n~~~~gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~-y~~~~~~Le~~~p~L~pGGiIv~DD~~-~~-~---G  250 (282)
T 2wk1_A          177 VRRNFRNYDLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDL-YESTWDTLTNLYPKVSVGGYVIVDDYM-MC-P---P  250 (282)
T ss_dssp             HHHHHHHTTCCSTTEEEEESCHHHHSTTCCCCCEEEEEECCCS-HHHHHHHHHHHGGGEEEEEEEEESSCT-TC-H---H
T ss_pred             HHHHHHHcCCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCc-cccHHHHHHHHHhhcCCCEEEEEcCCC-CC-H---H
Confidence                        356788887754 43 345789999987642 223457899999999999999886652 11 1   1


Q ss_pred             CCHHHHHHHHHHCCCeEEE
Q 022592          237 ADPNKFSKAVCDLGFAPVS  255 (294)
Q Consensus       237 ~~~~~~~~~l~~~Gf~~~~  255 (294)
                       ....+.+.++..|+.+.-
T Consensus       251 -~~~Av~Ef~~~~~i~~~i  268 (282)
T 2wk1_A          251 -CKDAVDEYRAKFDIADEL  268 (282)
T ss_dssp             -HHHHHHHHHHHTTCCSCC
T ss_pred             -HHHHHHHHHHhcCCceEE
Confidence             235677778888876543

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=97.45  E-value=0.0022  Score=56.79  Aligned_cols=115  Identities=11%  Similarity=0.156  Sum_probs=75.3

Q ss_pred             HHHHHHhhcc----CCCCEEEEEcC------cccHHH-HHh-cc--ceEEEeccC---CCCcEEEccCCCCCCCCCCccE
Q 022592          130 NIIVKWLKDH----SPSLVIADFGC------GDARLA-KSV-KN--KVFSFDLVS---NDPSVIACDMSNTPLNSSSVDV  192 (294)
Q Consensus       130 ~~~~~~l~~~----~~~~~VLDiGc------G~G~~~-~~l-~~--~v~gvD~s~---~~~~~~~~d~~~lp~~~~~fD~  192 (294)
                      ..++++|...    +-+.+|||+|+      -+|.+. ..+ ..  .|+++|+.+   ....++.+|+..+.. ...||+
T Consensus        94 tqlcqyl~~~~~~vp~gmrVLDLGA~s~kg~APGS~VLr~~~p~g~~VVavDL~~~~sda~~~IqGD~~~~~~-~~k~DL  172 (344)
T 3r24_A           94 TQLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLNDFVSDADSTLIGDCATVHT-ANKWDL  172 (344)
T ss_dssp             HHHHHHHTTSCCCCCTTCEEEEESCCCTTSBCHHHHHHHHHSCTTCEEEEEESSCCBCSSSEEEESCGGGEEE-SSCEEE
T ss_pred             HHHHHHhccccEeecCCCEEEeCCCCCCCCCCCcHHHHHHhCCCCcEEEEeeCcccccCCCeEEEcccccccc-CCCCCE
Confidence            4477777542    56789999996      566642 222 22  799999988   222458899866443 477999


Q ss_pred             EEEcccccC---C--C-------HHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEE
Q 022592          193 AVFCLSLMG---I--N-------FPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVS  255 (294)
Q Consensus       193 Vi~~~~l~~---~--~-------~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~  255 (294)
                      |+|-.+-.-   .  +       .+.++.-+.++|+|||.|++=-+.....        +.+.++. + -|..+.
T Consensus       173 VISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQGsg~--------~~L~~lr-k-~F~~VK  237 (344)
T 3r24_A          173 IISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWN--------ADLYKLM-G-HFSWWT  237 (344)
T ss_dssp             EEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCC--------HHHHHHH-T-TEEEEE
T ss_pred             EEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecCCCH--------HHHHHHH-h-hCCeEE
Confidence            998655432   1  1       2456666788999999999965544331        4455544 3 687666

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=97.35  E-value=5.6e-05  Score=70.57  Aligned_cols=59  Identities=12%  Similarity=0.062  Sum_probs=46.0

Q ss_pred             CCCEEEEEcCcccHHHHHhc---cceEEEeccC------------C-----CCcEEEccCCCC-CC-CCCCccEEEEccc
Q 022592          141 PSLVIADFGCGDARLAKSVK---NKVFSFDLVS------------N-----DPSVIACDMSNT-PL-NSSSVDVAVFCLS  198 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~------------~-----~~~~~~~d~~~l-p~-~~~~fD~Vi~~~~  198 (294)
                      ++.+|||+|||+|..+..++   ..|+|+|+++            .     ++.++++|+... +. ++++||+|++...
T Consensus        93 ~g~~VLDLgcG~G~~al~LA~~g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~lDPP  172 (410)
T 3ll7_A           93 EGTKVVDLTGGLGIDFIALMSKASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYVDPA  172 (410)
T ss_dssp             TTCEEEESSCSSSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEECCE
T ss_pred             CCCEEEEeCCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEECCC
Confidence            36799999999999988887   4799999987            1     367889998774 32 2457999998644


Q ss_pred             c
Q 022592          199 L  199 (294)
Q Consensus       199 l  199 (294)
                      .
T Consensus       173 r  173 (410)
T 3ll7_A          173 R  173 (410)
T ss_dssp             E
T ss_pred             C
Confidence            3

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=97.34  E-value=0.00056  Score=61.21  Aligned_cols=118  Identities=15%  Similarity=0.080  Sum_probs=75.1

Q ss_pred             CCCEEEEEcCcccHHHHH-hc--------c--ceEEEeccC---------------------------C--CCcEEEccC
Q 022592          141 PSLVIADFGCGDARLAKS-VK--------N--KVFSFDLVS---------------------------N--DPSVIACDM  180 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~-l~--------~--~v~gvD~s~---------------------------~--~~~~~~~d~  180 (294)
                      +..+|||+|-|+|..... +.        .  +++++|..+                           .  ...+..+|+
T Consensus        96 ~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa  175 (308)
T 3vyw_A           96 KVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDA  175 (308)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCH
T ss_pred             CCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechH
Confidence            345899999999985432 21        1  456666422                           0  123455666


Q ss_pred             CC-CC-CCCCCccEEEEcccccCCCH----HHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEE
Q 022592          181 SN-TP-LNSSSVDVAVFCLSLMGINF----PNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPV  254 (294)
Q Consensus       181 ~~-lp-~~~~~fD~Vi~~~~l~~~~~----~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~  254 (294)
                      .. ++ +.+..||+|+...---..+|    ..+++.++++++|||.|.-..            ....+...|.++||.+.
T Consensus       176 ~~~l~~l~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~laTYt------------aag~VRR~L~~aGF~V~  243 (308)
T 3vyw_A          176 RKRIKEVENFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWVSYS------------SSLSVRKSLLTLGFKVG  243 (308)
T ss_dssp             HHHGGGCCSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEEESC------------CCHHHHHHHHHTTCEEE
T ss_pred             HHHHhhhcccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEEEEe------------CcHHHHHHHHHCCCEEE
Confidence            43 33 34457999887542222344    489999999999999887632            34788999999999998


Q ss_pred             EEeccCCeEEEEEEEE
Q 022592          255 SKDFSNKMFIMFYFKK  270 (294)
Q Consensus       255 ~~~~~~~~f~~i~~~k  270 (294)
                      ...-....-.++.+..
T Consensus       244 k~~G~g~KReml~A~~  259 (308)
T 3vyw_A          244 SSREIGRKRKGTVASL  259 (308)
T ss_dssp             EEECC---CEEEEEES
T ss_pred             ecCCCCCCCceeEEec
Confidence            8654333334555544

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=97.33  E-value=0.00075  Score=56.83  Aligned_cols=79  Identities=18%  Similarity=0.176  Sum_probs=54.8

Q ss_pred             CCCEEEEEcCcccHHHHHhc----cceEEEeccC------------C------CCcEEEccCCCC---------------
Q 022592          141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVS------------N------DPSVIACDMSNT---------------  183 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~------------~------~~~~~~~d~~~l---------------  183 (294)
                      ...+|||||||.  -+..++    .+|+.+|.++            .      ++.++.+|+...               
T Consensus        30 ~a~~VLEiGtGy--STl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l  107 (202)
T 3cvo_A           30 EAEVILEYGSGG--STVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSY  107 (202)
T ss_dssp             HCSEEEEESCSH--HHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGT
T ss_pred             CCCEEEEECchH--HHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhhH
Confidence            346999999964  333332    5899999876            1      367888886532               


Q ss_pred             C--------C-CCCCccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEe
Q 022592          184 P--------L-NSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAE  225 (294)
Q Consensus       184 p--------~-~~~~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e  225 (294)
                      +        . ..++||+|+.....    ....+..+.+.|+|||.+++-+
T Consensus       108 ~~~~~~i~~~~~~~~fDlIfIDg~k----~~~~~~~~l~~l~~GG~Iv~DN  154 (202)
T 3cvo_A          108 PDYPLAVWRTEGFRHPDVVLVDGRF----RVGCALATAFSITRPVTLLFDD  154 (202)
T ss_dssp             THHHHGGGGCTTCCCCSEEEECSSS----HHHHHHHHHHHCSSCEEEEETT
T ss_pred             HHHhhhhhccccCCCCCEEEEeCCC----chhHHHHHHHhcCCCeEEEEeC
Confidence            1        1 23689999987642    2467777889999999996644

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=97.28  E-value=0.00041  Score=63.63  Aligned_cols=95  Identities=15%  Similarity=0.142  Sum_probs=64.2

Q ss_pred             HHHHhhccCCCCEEEEEcCcccHHHHHhc-----cceEEEeccCC---------------------CCcEEEccCCCCC-
Q 022592          132 IVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVSN---------------------DPSVIACDMSNTP-  184 (294)
Q Consensus       132 ~~~~l~~~~~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~~---------------------~~~~~~~d~~~lp-  184 (294)
                      +...+....++.+|||+++|+|.=+..++     ..++++|++..                     ++.+...|...++ 
T Consensus       139 l~~~~L~~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~  218 (359)
T 4fzv_A          139 LPVLALGLQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGE  218 (359)
T ss_dssp             HHHHHHCCCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHH
T ss_pred             HHHHHhCCCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcch
Confidence            34444444478899999999998666554     37999999871                     3445566665543 


Q ss_pred             CCCCCccEEEEccc-------ccC--CC----------------HHHHHHHHHHhcCcCcEEEEEee
Q 022592          185 LNSSSVDVAVFCLS-------LMG--IN----------------FPNYLQEAQRVLKPSGWLLIAEV  226 (294)
Q Consensus       185 ~~~~~fD~Vi~~~~-------l~~--~~----------------~~~~l~el~r~LkpgG~l~i~e~  226 (294)
                      ...+.||.|++...       ...  .+                -...|..+.++|||||.|+.+.-
T Consensus       219 ~~~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTC  285 (359)
T 4fzv_A          219 LEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTC  285 (359)
T ss_dssp             HSTTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEES
T ss_pred             hccccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeC
Confidence            34578999995321       111  11                12578888999999999999864

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=97.21  E-value=9.7e-05  Score=82.95  Aligned_cols=125  Identities=15%  Similarity=0.185  Sum_probs=57.8

Q ss_pred             HHHHhhcc--CCCCEEEEEcCcccHHHHHhc----------cceEEEeccCCCC-----cE-----EE--ccCCC-CCCC
Q 022592          132 IVKWLKDH--SPSLVIADFGCGDARLAKSVK----------NKVFSFDLVSNDP-----SV-----IA--CDMSN-TPLN  186 (294)
Q Consensus       132 ~~~~l~~~--~~~~~VLDiGcG~G~~~~~l~----------~~v~gvD~s~~~~-----~~-----~~--~d~~~-lp~~  186 (294)
                      +++.+...  .+..+||+||.|+|..+..+.          ..++..|+|+.-.     .|     ..  .|... .++.
T Consensus      1229 ~~~~~~~~~~~~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~di~~~~~d~~~~~~~~ 1308 (2512)
T 2vz8_A         1229 CVDTALENMASPKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLHVTQGQWDPANPAPGS 1308 (2512)
T ss_dssp             HHHHHHTTSSSSEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHTEEEECCCSSCCCC--
T ss_pred             HHHHHHhcCCCCCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcccccccccccccccCC
Confidence            44444443  346799999999997544321          2567788886322     11     11  12222 1334


Q ss_pred             CCCccEEEEcccccCC-CHHHHHHHHHHhcCcCcEEEEEeecCC---------CCC----CCCCCCHHHHHHHHHHCCCe
Q 022592          187 SSSVDVAVFCLSLMGI-NFPNYLQEAQRVLKPSGWLLIAEVKSR---------FDP----NTGGADPNKFSKAVCDLGFA  252 (294)
Q Consensus       187 ~~~fD~Vi~~~~l~~~-~~~~~l~el~r~LkpgG~l~i~e~~~~---------~~~----~~~~~~~~~~~~~l~~~Gf~  252 (294)
                      ..+||+||++.+||.. +....+..+.++|+|||.+++.+....         +..    .....+.++|..+|..+||.
T Consensus      1309 ~~~ydlvia~~vl~~t~~~~~~l~~~~~lL~p~G~l~~~e~~~~~~~g~~~~~~~~~~r~~~~~~~~~~w~~~l~~~gf~ 1388 (2512)
T 2vz8_A         1309 LGKADLLVCNCALATLGDPAVAVGNMAATLKEGGFLLLHTLLAGHPLGEMVGFLTSPEQGGRHLLSQDQWESLFAGASLH 1388 (2512)
T ss_dssp             ---CCEEEEECC--------------------CCEEEEEEC--------------------------CTTTTSSTTTTEE
T ss_pred             CCceeEEEEcccccccccHHHHHHHHHHhcCCCcEEEEEeccccccccccccccccccccCCcccCHHHHHHHHHhCCCc
Confidence            5679999999999864 788899999999999999998764321         000    01123445666778889998


Q ss_pred             EEEE
Q 022592          253 PVSK  256 (294)
Q Consensus       253 ~~~~  256 (294)
                      .+..
T Consensus      1389 ~~~~ 1392 (2512)
T 2vz8_A         1389 LVAL 1392 (2512)
T ss_dssp             EEEE
T ss_pred             eeee
Confidence            8764

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=97.21  E-value=0.0011  Score=63.85  Aligned_cols=122  Identities=17%  Similarity=0.178  Sum_probs=79.1

Q ss_pred             CCcHHHHHHHHhhccCCCCEEEEEcCcccHHHHHhc------------------cceEEEeccC---------------C
Q 022592          125 PELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK------------------NKVFSFDLVS---------------N  171 (294)
Q Consensus       125 ~~~~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~------------------~~v~gvD~s~---------------~  171 (294)
                      |...++.+++.+... ++.+|+|-+||+|.++..+.                  ..++|+|+.+               .
T Consensus       202 P~~Vv~lmv~l~~p~-~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~  280 (530)
T 3ufb_A          202 PRPVVRFMVEVMDPQ-LGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLE  280 (530)
T ss_dssp             CHHHHHHHHHHHCCC-TTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCS
T ss_pred             cHHHHHHHHHhhccC-CCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCc
Confidence            445566677766554 66799999999999876543                  2589999887               2


Q ss_pred             CCcEEEccCCCCCCC----CCCccEEEEcccccCC----------------C-HHHHHHHHHHhcC-------cCcEEEE
Q 022592          172 DPSVIACDMSNTPLN----SSSVDVAVFCLSLMGI----------------N-FPNYLQEAQRVLK-------PSGWLLI  223 (294)
Q Consensus       172 ~~~~~~~d~~~lp~~----~~~fD~Vi~~~~l~~~----------------~-~~~~l~el~r~Lk-------pgG~l~i  223 (294)
                      ...+..+|....|..    ...||+|+++..+...                + -..++..+.+.|+       |||++.+
T Consensus       281 ~~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~av  360 (530)
T 3ufb_A          281 YPRIDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAV  360 (530)
T ss_dssp             CCEEECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEE
T ss_pred             cccccccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEE
Confidence            345667776654432    3479999998877421                0 1257788888887       7999999


Q ss_pred             EeecCCCCCCCCCCCHHHHHHHHHHCC
Q 022592          224 AEVKSRFDPNTGGADPNKFSKAVCDLG  250 (294)
Q Consensus       224 ~e~~~~~~~~~~~~~~~~~~~~l~~~G  250 (294)
                      +-..+.....   -....+.+.|-+.+
T Consensus       361 VlP~g~Lf~~---~~~~~iRk~Lle~~  384 (530)
T 3ufb_A          361 VVPNGTLFSD---GISARIKEELLKNF  384 (530)
T ss_dssp             EEEHHHHHCC---THHHHHHHHHHHHS
T ss_pred             Eecchhhhcc---chHHHHHHHHhhcC
Confidence            8655432211   01245665554443

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=96.85  E-value=0.00067  Score=62.41  Aligned_cols=105  Identities=13%  Similarity=0.078  Sum_probs=67.1

Q ss_pred             CCCEEEEEcCcccHHHHHhc----cceEEEeccCC-----------------------CCcEEEccCCCC----CCCCCC
Q 022592          141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVSN-----------------------DPSVIACDMSNT----PLNSSS  189 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~~-----------------------~~~~~~~d~~~l----p~~~~~  189 (294)
                      +..+||=||.|.|..+..+.    .+|+.||+.+.                       +++++.+|....    +-..+.
T Consensus       205 ~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~~  284 (381)
T 3c6k_A          205 TGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGRE  284 (381)
T ss_dssp             TTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTCC
T ss_pred             CCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccCc
Confidence            34699999999999998886    37889998861                       245556665431    112457


Q ss_pred             ccEEEEcccccC--CC---------HHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCC
Q 022592          190 VDVAVFCLSLMG--IN---------FPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLG  250 (294)
Q Consensus       190 fD~Vi~~~~l~~--~~---------~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~G  250 (294)
                      ||+|+....-..  .+         -..+++.+.++|+|||+++.-. .+.+..    -....+.+.+++..
T Consensus       285 yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~-~s~~~~----~~~~~i~~tl~~vF  351 (381)
T 3c6k_A          285 FDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQG-NCVNLT----EALSLYEEQLGRLY  351 (381)
T ss_dssp             EEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEE-EETTCH----HHHHHHHHHHTTSS
T ss_pred             eeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEec-CCCcch----hHHHHHHHHHHHhC
Confidence            999998643221  11         1467889999999999988632 111110    02245566677663

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=96.66  E-value=0.0021  Score=56.80  Aligned_cols=69  Identities=20%  Similarity=0.205  Sum_probs=51.9

Q ss_pred             HHHHHHHhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccC-----------CCCcEEEccCCCCC-----CCCCC
Q 022592          129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS-----------NDPSVIACDMSNTP-----LNSSS  189 (294)
Q Consensus       129 ~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~-----------~~~~~~~~d~~~lp-----~~~~~  189 (294)
                      ++.+++.+... ++..+||.+||.|.++..++   ..|+|+|.++           .++.++.+++.+++     ...++
T Consensus        11 l~e~le~L~~~-~gg~~VD~T~G~GGHS~~il~~~g~VigiD~Dp~Ai~~A~~L~~~rv~lv~~~f~~l~~~L~~~g~~~   89 (285)
T 1wg8_A           11 YQEALDLLAVR-PGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAALGVER   89 (285)
T ss_dssp             HHHHHHHHTCC-TTCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHTTCSC
T ss_pred             HHHHHHhhCCC-CCCEEEEeCCCCcHHHHHHHHCCCEEEEEeCCHHHHHHHHhhccCCEEEEECCcchHHHHHHHcCCCC
Confidence            46677777655 67799999999999999887   4899999987           35677888877653     12256


Q ss_pred             ccEEEEccc
Q 022592          190 VDVAVFCLS  198 (294)
Q Consensus       190 fD~Vi~~~~  198 (294)
                      +|.|++...
T Consensus        90 vDgIL~DLG   98 (285)
T 1wg8_A           90 VDGILADLG   98 (285)
T ss_dssp             EEEEEEECS
T ss_pred             cCEEEeCCc
Confidence            888886544

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=95.58  E-value=0.008  Score=53.33  Aligned_cols=41  Identities=15%  Similarity=0.176  Sum_probs=31.4

Q ss_pred             HHHHHHHhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccCC
Q 022592          129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVSN  171 (294)
Q Consensus       129 ~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~~  171 (294)
                      +..++..+.  .++..|||++||+|..+..++   ..++|+|+++.
T Consensus       225 ~~~~i~~~~--~~~~~vlD~f~GsGt~~~~a~~~g~~~~g~e~~~~  268 (297)
T 2zig_A          225 AERLVRMFS--FVGDVVLDPFAGTGTTLIAAARWGRRALGVELVPR  268 (297)
T ss_dssp             HHHHHHHHC--CTTCEEEETTCTTTHHHHHHHHTTCEEEEEESCHH
T ss_pred             HHHHHHHhC--CCCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHH
Confidence            344444443  367899999999999888776   58999999873

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=94.76  E-value=0.068  Score=49.09  Aligned_cols=108  Identities=14%  Similarity=0.084  Sum_probs=68.7

Q ss_pred             CEEEEEcCcccHHHHHhc----cceEEEeccC----------CCCcEEEccCCCCCC--------CCCCccEEEEccccc
Q 022592          143 LVIADFGCGDARLAKSVK----NKVFSFDLVS----------NDPSVIACDMSNTPL--------NSSSVDVAVFCLSLM  200 (294)
Q Consensus       143 ~~VLDiGcG~G~~~~~l~----~~v~gvD~s~----------~~~~~~~~d~~~lp~--------~~~~fD~Vi~~~~l~  200 (294)
                      .++||+-||.|.++..+.    ..+.++|+.+          ....++.+|+..+..        ....+|+|+...--.
T Consensus         3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~~N~~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~ggpPCQ   82 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINFPRSLHVQEDVSLLNAEIIKGFFKNDMPIDGIIGGPPCQ   82 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHHHHCTTSEEECCCGGGCCHHHHHHHHCSCCCCCEEEECCCCC
T ss_pred             CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHHHhCCCCceEecChhhcCHHHHHhhcccCCCeeEEEecCCCC
Confidence            579999999999887775    3678999987          356678889887631        235799999765543


Q ss_pred             CC---------C-HHHHHH---HHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeE
Q 022592          201 GI---------N-FPNYLQ---EAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAP  253 (294)
Q Consensus       201 ~~---------~-~~~~l~---el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~  253 (294)
                      .+         | ...++.   ++...++|  .+++.|=...+...........+. .|++.||.+
T Consensus        83 ~fS~ag~~~~~d~r~~L~~~~~~~v~~~~P--~~~v~ENV~gl~s~~~~~~~~~i~-~l~~~GY~v  145 (376)
T 3g7u_A           83 GFSSIGKGNPDDSRNQLYMHFYRLVSELQP--LFFLAENVPGIMQEKYSGIRNKAF-NLVSGDYDI  145 (376)
T ss_dssp             TTC-------CHHHHHHHHHHHHHHHHHCC--SEEEEEECTTTTCGGGHHHHHHHH-HHHHTTEEE
T ss_pred             CcccccCCCCCCchHHHHHHHHHHHHHhCC--CEEEEecchHhhccCcHHHHHHHH-HHHcCCCcc
Confidence            32         1 112333   34455677  455555433332211112345667 899999988

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=94.39  E-value=0.21  Score=45.03  Aligned_cols=111  Identities=10%  Similarity=0.132  Sum_probs=73.5

Q ss_pred             CCCEEEEEcCcccHHHHHhc---c--ceEEEeccC-----------------------------------CCCcEEEccC
Q 022592          141 PSLVIADFGCGDARLAKSVK---N--KVFSFDLVS-----------------------------------NDPSVIACDM  180 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~---~--~v~gvD~s~-----------------------------------~~~~~~~~d~  180 (294)
                      +...|+.+|||.......+.   .  .++-+|...                                   .+..++.+|+
T Consensus        97 ~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~DL  176 (334)
T 1rjd_A           97 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACDL  176 (334)
T ss_dssp             SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECCT
T ss_pred             CCcEEEEeCCCCccHHHHhcCcCCCCEEEECCCHHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecCC
Confidence            45689999999998776664   2  455666422                                   3456788888


Q ss_pred             CCCCC---------CCCCccEEEEcccccCCCHH---HHHHHHHHhcCcCcEEEEEeecCC------C------------
Q 022592          181 SNTPL---------NSSSVDVAVFCLSLMGINFP---NYLQEAQRVLKPSGWLLIAEVKSR------F------------  230 (294)
Q Consensus       181 ~~lp~---------~~~~fD~Vi~~~~l~~~~~~---~~l~el~r~LkpgG~l~i~e~~~~------~------------  230 (294)
                      .+...         ......++++-.+|++.++.   .+++.+...+ |+|.+++.|....      +            
T Consensus       177 ~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e~i~~~~~~~~fg~~m~~~l~~~r  255 (334)
T 1rjd_A          177 NDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPIGGSQPNDRFGAIMQSNLKESR  255 (334)
T ss_dssp             TCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCCCSTTCCHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEeccCCCCCcchHHHHHHHHhhccc
Confidence            77321         22457888999999987554   6666677765 7888877764322      0            


Q ss_pred             CCC----CCCCCHHHHHHHHHHCCCe
Q 022592          231 DPN----TGGADPNKFSKAVCDLGFA  252 (294)
Q Consensus       231 ~~~----~~~~~~~~~~~~l~~~Gf~  252 (294)
                      ...    ....+++...+.|.++||.
T Consensus       256 g~~l~~~~~y~s~~~~~~rl~~~Gf~  281 (334)
T 1rjd_A          256 NLEMPTLMTYNSKEKYASRWSAAPNV  281 (334)
T ss_dssp             CCCCTTTTTTCSHHHHHGGGTTSSEE
T ss_pred             CCcccccccCCCHHHHHHHHHHCCCC
Confidence            000    1124777888888888986

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=94.22  E-value=0.45  Score=42.25  Aligned_cols=111  Identities=11%  Similarity=0.092  Sum_probs=70.8

Q ss_pred             CEEEEEcCcccHHHHHhc----cceEEEeccCC---------CCcEEEccCCCCCCC-CCCccEEEEcccccC-------
Q 022592          143 LVIADFGCGDARLAKSVK----NKVFSFDLVSN---------DPSVIACDMSNTPLN-SSSVDVAVFCLSLMG-------  201 (294)
Q Consensus       143 ~~VLDiGcG~G~~~~~l~----~~v~gvD~s~~---------~~~~~~~d~~~lp~~-~~~fD~Vi~~~~l~~-------  201 (294)
                      ++|||+=||-|.+...+.    ..+.++|+.+.         ...++.+|+.++... -..+|+++...--..       
T Consensus         1 mkvidLFsG~GG~~~G~~~aG~~~v~a~e~d~~a~~ty~~N~~~~~~~~DI~~i~~~~~~~~D~l~ggpPCQ~fS~ag~~   80 (331)
T 3ubt_Y            1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHSAKLIKGDISKISSDEFPKCDGIIGGPPSQSWSEGGSL   80 (331)
T ss_dssp             CEEEEESCTTCHHHHHHHHTTCEEEEEEECCTTTHHHHHHHCCSEEEESCGGGCCGGGSCCCSEEECCCCGGGTEETTEE
T ss_pred             CeEEEeCcCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCCCCcccCChhhCCHhhCCcccEEEecCCCCCcCCCCCc
Confidence            479999999998877664    36789999883         335778898876422 235899886543321       


Q ss_pred             ---CCHH-HHHH---HHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEE
Q 022592          202 ---INFP-NYLQ---EAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVS  255 (294)
Q Consensus       202 ---~~~~-~~l~---el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~  255 (294)
                         .|.. .++.   ++.+.++|.  +++.|=...+...........+...|++.||.+..
T Consensus        81 ~g~~d~R~~L~~~~~r~i~~~~Pk--~~~~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~~  139 (331)
T 3ubt_Y           81 RGIDDPRGKLFYEYIRILKQKKPI--FFLAENVKGMMAQRHNKAVQEFIQEFDNAGYDVHI  139 (331)
T ss_dssp             CCTTCGGGHHHHHHHHHHHHHCCS--EEEEEECCGGGGCTTSHHHHHHHHHHHHHTEEEEE
T ss_pred             cCCCCchhHHHHHHHHHHhccCCe--EEEeeeecccccccccchhhhhhhhhccCCcEEEE
Confidence               1322 3333   344556883  55555444333333333567788899999998876

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=94.13  E-value=0.17  Score=45.41  Aligned_cols=112  Identities=13%  Similarity=0.131  Sum_probs=67.2

Q ss_pred             CCEEEEEcCcccHHHHHhc----cceEEEeccCCC--------CcEEEccCCCCCCC-CCCccEEEEcccccCC------
Q 022592          142 SLVIADFGCGDARLAKSVK----NKVFSFDLVSND--------PSVIACDMSNTPLN-SSSVDVAVFCLSLMGI------  202 (294)
Q Consensus       142 ~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~~~--------~~~~~~d~~~lp~~-~~~fD~Vi~~~~l~~~------  202 (294)
                      ..++||+.||.|.+...+.    ..++++|+.+..        .....+|+..+... -..+|+|+...-...+      
T Consensus        11 ~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~~N~~~~~~~Di~~~~~~~~~~~D~l~~gpPCQ~fS~ag~~   90 (327)
T 2c7p_A           11 GLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEKPEGDITQVNEKTIPDHDILCAGFPCQAFSISGKQ   90 (327)
T ss_dssp             TCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSCCCBSCGGGSCGGGSCCCSEEEEECCCTTTCTTSCC
T ss_pred             CCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCCCcCCHHHcCHhhCCCCCEEEECCCCCCcchhccc
Confidence            4689999999999887775    368889988721        01126777765321 1258999976544321      


Q ss_pred             ----CHH----HHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEE
Q 022592          203 ----NFP----NYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVS  255 (294)
Q Consensus       203 ----~~~----~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~  255 (294)
                          |..    ..+.++.+.++|.  +++.|=...+.....+...+.+...|++.||.+..
T Consensus        91 ~g~~d~r~~L~~~~~r~i~~~~P~--~~~~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~~  149 (327)
T 2c7p_A           91 KGFEDSRGTLFFDIARIVREKKPK--VVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHA  149 (327)
T ss_dssp             CGGGSTTSCHHHHHHHHHHHHCCS--EEEEEEEGGGGTGGGGHHHHHHHHHHHHTTBCCEE
T ss_pred             CCCcchhhHHHHHHHHHHHhccCc--EEEEeCcHHHHhccccHHHHHHHHHHHhCCCEEEE
Confidence                211    2233344556784  55555333322211222456788899999998766

>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*

Probab=94.07  E-value=0.065  Score=46.60  Aligned_cols=71  Identities=13%  Similarity=-0.012  Sum_probs=44.9

Q ss_pred             CCCccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEEeccCCe
Q 022592          187 SSSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSKDFSNKM  262 (294)
Q Consensus       187 ~~~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~  262 (294)
                      ..+||+|..-.-. +.+....+..+...|+|||++++-++...   ..++ -...+.+.+.+.|..+.........
T Consensus       180 ~~~~dlv~ID~D~-Y~~t~~~le~~~p~l~~GGvIv~DD~~~~---~w~G-~~~A~~ef~~~~~~~i~~~p~~~~~  250 (257)
T 3tos_A          180 QTVIALAYFDLDL-YEPTKAVLEAIRPYLTKGSIVAFDELDNP---KWPG-ENIAMRKVLGLDHAPLRLLPGRPAP  250 (257)
T ss_dssp             TCCEEEEEECCCC-HHHHHHHHHHHGGGEEEEEEEEESSTTCT---TCTH-HHHHHHHHTCTTSSCCEECTTCSCC
T ss_pred             CCceEEEEEcCcc-cchHHHHHHHHHHHhCCCcEEEEcCCCCC---CChH-HHHHHHHHHhhCCCeEEEccCCCCC
Confidence            3457887766532 12345678889999999999999665321   1111 2245677778888877775554433

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=93.97  E-value=0.04  Score=49.47  Aligned_cols=84  Identities=12%  Similarity=0.159  Sum_probs=54.1

Q ss_pred             CCCcEEEccCCC-CC-CCCCCccEEEEcccccCC---------------CHHHHHHHHHHhcCcCcEEEEEeecCCCCCC
Q 022592          171 NDPSVIACDMSN-TP-LNSSSVDVAVFCLSLMGI---------------NFPNYLQEAQRVLKPSGWLLIAEVKSRFDPN  233 (294)
Q Consensus       171 ~~~~~~~~d~~~-lp-~~~~~fD~Vi~~~~l~~~---------------~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~  233 (294)
                      ....++.+|... +. +++++||+|++..-....               .....+.++.++|+|||.+++.- ...+...
T Consensus        13 ~~~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~-~d~~~~g   91 (323)
T 1boo_A           13 SNGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDF-GGAYMKG   91 (323)
T ss_dssp             SSEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE-CCCEETT
T ss_pred             CCceEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEE-CCEecCC
Confidence            455677888754 33 567899999988665321               24578899999999999998852 1111000


Q ss_pred             ---CCCCCHHHHHHHHHHCCCeEEE
Q 022592          234 ---TGGADPNKFSKAVCDLGFAPVS  255 (294)
Q Consensus       234 ---~~~~~~~~~~~~l~~~Gf~~~~  255 (294)
                         ...+....+..+++.+||....
T Consensus        92 ~~~~~~~~~~~i~~~~~~~Gf~~~~  116 (323)
T 1boo_A           92 VPARSIYNFRVLIRMIDEVGFFLAE  116 (323)
T ss_dssp             EEEECCHHHHHHHHHHHTTCCEEEE
T ss_pred             CcccccchHHHHHHHHHhCCCEEEE
Confidence               0011234566778899997654

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=93.81  E-value=0.034  Score=50.25  Aligned_cols=70  Identities=16%  Similarity=0.159  Sum_probs=51.7

Q ss_pred             HHHHHHHhhccCCCCEEEEEcCcccHHHHHhc------cceEEEeccC-----------CCCcEEEccCCCCC--CC---
Q 022592          129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS-----------NDPSVIACDMSNTP--LN---  186 (294)
Q Consensus       129 ~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~-----------~~~~~~~~d~~~lp--~~---  186 (294)
                      ++.+++.|... ++..++|..||.|..+..++      .+|+|+|..+           .++.++.+++.++.  ++   
T Consensus        46 l~Evl~~L~i~-pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~rL~~~Rv~lv~~nF~~l~~~L~~~g  124 (347)
T 3tka_A           46 LDEAVNGLNIR-PDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKTIDDPRFSIIHGPFSALGEYVAERD  124 (347)
T ss_dssp             THHHHHHTCCC-TTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHTTCCCTTEEEEESCGGGHHHHHHHTT
T ss_pred             HHHHHHhhCCC-CCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHhhcCCcEEEEeCCHHHHHHHHHhcC
Confidence            46677777655 67899999999999988775      3799999886           35677888776643  11   


Q ss_pred             -CCCccEEEEcccc
Q 022592          187 -SSSVDVAVFCLSL  199 (294)
Q Consensus       187 -~~~fD~Vi~~~~l  199 (294)
                       .+++|.|++...+
T Consensus       125 ~~~~vDgILfDLGV  138 (347)
T 3tka_A          125 LIGKIDGILLDLGV  138 (347)
T ss_dssp             CTTCEEEEEEECSC
T ss_pred             CCCcccEEEECCcc
Confidence             1368999876655

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=93.73  E-value=0.21  Score=45.07  Aligned_cols=108  Identities=14%  Similarity=0.222  Sum_probs=65.9

Q ss_pred             CEEEEEcCcccHHHHHhc--c----ceEEEeccC----------CCCcEEEccCCCCCC---CCCCccEEEEcccccCC-
Q 022592          143 LVIADFGCGDARLAKSVK--N----KVFSFDLVS----------NDPSVIACDMSNTPL---NSSSVDVAVFCLSLMGI-  202 (294)
Q Consensus       143 ~~VLDiGcG~G~~~~~l~--~----~v~gvD~s~----------~~~~~~~~d~~~lp~---~~~~fD~Vi~~~~l~~~-  202 (294)
                      .+|||+-||.|.+...+.  .    .|+++|+.+          ....++.+|+..+..   +...+|+|+...--..+ 
T Consensus         3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~~~~~~~Di~~~~~~~~~~~~~D~l~~gpPCq~fS   82 (343)
T 1g55_A            3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMSPPCQPFT   82 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECSCGGGCCHHHHHHHCCSEEEECCC-----
T ss_pred             CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccccccccCCHHHccHhHcCcCCcCEEEEcCCCcchh
Confidence            479999999999887664  2    588999987          345578889887642   11258999986553321 


Q ss_pred             ---------CHH-HHHHHHH---HhcC--cCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEE
Q 022592          203 ---------NFP-NYLQEAQ---RVLK--PSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVS  255 (294)
Q Consensus       203 ---------~~~-~~l~el~---r~Lk--pgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~  255 (294)
                               |.. .++.++.   +.++  |.  +++.|-...+..   ..+...+.+.|++.||.+..
T Consensus        83 ~ag~~~g~~d~r~~l~~~~~~~i~~~~~~P~--~~~~ENV~~l~~---~~~~~~i~~~l~~~GY~v~~  145 (343)
T 1g55_A           83 RIGRQGDMTDSRTNSFLHILDILPRLQKLPK--YILLENVKGFEV---SSTRDLLIQTIENCGFQYQE  145 (343)
T ss_dssp             -------------CHHHHHHHHGGGCSSCCS--EEEEEEETTGGG---SHHHHHHHHHHHHTTEEEEE
T ss_pred             hcCCcCCccCccchHHHHHHHHHHHhcCCCC--EEEEeCCccccC---HHHHHHHHHHHHHCCCeeEE
Confidence                     111 2333333   4445  53  444442222211   12456788899999998876

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=93.59  E-value=0.08  Score=46.76  Aligned_cols=84  Identities=18%  Similarity=0.194  Sum_probs=52.3

Q ss_pred             CCcEEEccCCC-CC-CCCCCccEEEEcccccCC-C--------------------HHHHHHHHHHhcCcCcEEEEEeecC
Q 022592          172 DPSVIACDMSN-TP-LNSSSVDVAVFCLSLMGI-N--------------------FPNYLQEAQRVLKPSGWLLIAEVKS  228 (294)
Q Consensus       172 ~~~~~~~d~~~-lp-~~~~~fD~Vi~~~~l~~~-~--------------------~~~~l~el~r~LkpgG~l~i~e~~~  228 (294)
                      ...++++|+.+ ++ +++++||+|+++.-.... +                    ...++.++.++|+|||.+++.--..
T Consensus        21 ~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~d~  100 (297)
T 2zig_A           21 VHRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVGDV  100 (297)
T ss_dssp             CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCE
T ss_pred             CCEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEECCC
Confidence            45677888765 22 557889999988766421 0                    2356789999999999998852110


Q ss_pred             CCCCC-CC---CCC-HHHHHHHHHHCCCeEEE
Q 022592          229 RFDPN-TG---GAD-PNKFSKAVCDLGFAPVS  255 (294)
Q Consensus       229 ~~~~~-~~---~~~-~~~~~~~l~~~Gf~~~~  255 (294)
                      ..... ..   .+. ...+..+++++||....
T Consensus       101 ~~~~~~~g~~~~~~~~~~l~~~~~~~Gf~~~~  132 (297)
T 2zig_A          101 AVARRRFGRHLVFPLHADIQVRCRKLGFDNLN  132 (297)
T ss_dssp             EEECC----EEEECHHHHHHHHHHHTTCEEEE
T ss_pred             ccccccCCcccccccHHHHHHHHHHcCCeeec
Confidence            00000 00   011 24677889999997765

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=92.61  E-value=0.092  Score=45.40  Aligned_cols=42  Identities=17%  Similarity=0.187  Sum_probs=31.6

Q ss_pred             cHHHHHHHHhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccC
Q 022592          127 LPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS  170 (294)
Q Consensus       127 ~~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~  170 (294)
                      ..++.++....  .++..|||..||+|..+..+.   .+++|+|+++
T Consensus       200 ~l~~~~i~~~~--~~~~~vlD~f~GsGtt~~~a~~~gr~~ig~e~~~  244 (260)
T 1g60_A          200 DLIERIIRASS--NPNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNA  244 (260)
T ss_dssp             HHHHHHHHHHC--CTTCEEEESSCTTCHHHHHHHHTTCEEEEEESCH
T ss_pred             HHHHHHHHHhC--CCCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCH
Confidence            33444555443  467899999999999887765   5899999886

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=92.33  E-value=0.14  Score=46.49  Aligned_cols=56  Identities=14%  Similarity=0.002  Sum_probs=42.2

Q ss_pred             HHHHHHHHhhccC-----CCCEEEEEcCcccHHHHHhc-----cceEEEeccC------------CCCcEEEccCCCC
Q 022592          128 PVNIIVKWLKDHS-----PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS------------NDPSVIACDMSNT  183 (294)
Q Consensus       128 ~~~~~~~~l~~~~-----~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~------------~~~~~~~~d~~~l  183 (294)
                      .++.+++.+....     ++..|||||.|.|.++..|.     .+|+++++..            .++.++.+|+..+
T Consensus        40 i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~~~~~l~ii~~D~l~~  117 (353)
T 1i4w_A           40 VYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYDW  117 (353)
T ss_dssp             HHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTCH
T ss_pred             HHHHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhccCCCEEEEECCccch
Confidence            3455666665432     35789999999999999886     2799999775            4788999998654

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=91.78  E-value=0.52  Score=46.45  Aligned_cols=60  Identities=13%  Similarity=0.087  Sum_probs=43.3

Q ss_pred             CCCccEEEEcccccCCCH----HHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEEec
Q 022592          187 SSSVDVAVFCLSLMGINF----PNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSKDF  258 (294)
Q Consensus       187 ~~~fD~Vi~~~~l~~~~~----~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  258 (294)
                      ...+|+++....--..++    ..++..+.++++|||.+....            ....+...|.++||.+.....
T Consensus       169 ~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~~------------~~~~vr~~l~~aGf~~~~~~~  232 (689)
T 3pvc_A          169 NNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFSTFT------------AAGFVRRGLQQAGFNVTKVKG  232 (689)
T ss_dssp             TTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEEESC------------CCHHHHHHHHHTTCEEEEEEC
T ss_pred             CCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEEecc------------CcHHHHHHHHhCCeEEEeccC
Confidence            467999887543222222    588999999999999876532            226889999999999887553

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=91.67  E-value=0.53  Score=46.26  Aligned_cols=72  Identities=17%  Similarity=0.092  Sum_probs=48.2

Q ss_pred             CCCccEEEEcccccCCCH----HHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEEeccCCe
Q 022592          187 SSSVDVAVFCLSLMGINF----PNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSKDFSNKM  262 (294)
Q Consensus       187 ~~~fD~Vi~~~~l~~~~~----~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~  262 (294)
                      ...||+++...---..++    ..++..++++++|||.+....            ....+...|.++||.+.........
T Consensus       177 ~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~~------------~~~~vr~~L~~aGf~v~~~~~~g~k  244 (676)
T 3ps9_A          177 NQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFT------------SAGFVRRGLQDAGFTMQKRKGFGRK  244 (676)
T ss_dssp             TTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEEEEEEEESC------------CCHHHHHHHHHHTCEEEEEECSTTC
T ss_pred             CCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCCCCEEEecc------------CcHHHHHHHHhCCeEEEeccccccc
Confidence            357999887542222233    478999999999999877532            2268899999999998875533333


Q ss_pred             EEEEEEEE
Q 022592          263 FIMFYFKK  270 (294)
Q Consensus       263 f~~i~~~k  270 (294)
                      ..++...+
T Consensus       245 rem~~~~~  252 (676)
T 3ps9_A          245 REMLCGVM  252 (676)
T ss_dssp             CEEEEEEC
T ss_pred             hhhhheec
Confidence            33444433

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=91.55  E-value=0.96  Score=40.51  Aligned_cols=111  Identities=11%  Similarity=0.082  Sum_probs=69.5

Q ss_pred             CCEEEEEcCcccHHHHHhc--c----ce-EEEeccC----------CCCcEEEccCCCCCC---CCCCccEEEEcccccC
Q 022592          142 SLVIADFGCGDARLAKSVK--N----KV-FSFDLVS----------NDPSVIACDMSNTPL---NSSSVDVAVFCLSLMG  201 (294)
Q Consensus       142 ~~~VLDiGcG~G~~~~~l~--~----~v-~gvD~s~----------~~~~~~~~d~~~lp~---~~~~fD~Vi~~~~l~~  201 (294)
                      ..+++|+-||.|.+...+.  .    .+ .++|+.+          ... ++.+|+.++..   +...+|+++....-..
T Consensus        10 ~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~~-~~~~DI~~~~~~~i~~~~~Dil~ggpPCQ~   88 (327)
T 3qv2_A           10 QVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKEE-VQVKNLDSISIKQIESLNCNTWFMSPPCQP   88 (327)
T ss_dssp             CEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCCC-CBCCCTTTCCHHHHHHTCCCEEEECCCCTT
T ss_pred             CCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCCC-cccCChhhcCHHHhccCCCCEEEecCCccC
Confidence            4589999999999877664  2    35 6999987          122 56778877642   2235899996543221


Q ss_pred             C------------CHH-HHHHHHHH-hcCc---CcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEE
Q 022592          202 I------------NFP-NYLQEAQR-VLKP---SGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSK  256 (294)
Q Consensus       202 ~------------~~~-~~l~el~r-~Lkp---gG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~  256 (294)
                      +            |.. ..+.++.+ +++.   .-.+++.|=...+..   ....+.+.+.|++.||.+...
T Consensus        89 fs~S~ag~~~~~~d~r~~L~~~~~r~~i~~~~~~P~~~~lENV~gl~~---~~~~~~i~~~l~~~GY~v~~~  157 (327)
T 3qv2_A           89 YNNSIMSKHKDINDPRAKSVLHLYRDILPYLINKPKHIFIENVPLFKE---SLVFKEIYNILIKNQYYIKDI  157 (327)
T ss_dssp             CSHHHHTTTCTTTCGGGHHHHHHHHTTGGGCSSCCSEEEEEECGGGGG---SHHHHHHHHHHHHTTCEEEEE
T ss_pred             cccccCCCCCCCccccchhHHHHHHHHHHHhccCCCEEEEEchhhhcC---hHHHHHHHHHHHhCCCEEEEE
Confidence            1            332 45666666 5532   135566553333221   124577889999999988763

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=91.40  E-value=0.29  Score=44.84  Aligned_cols=85  Identities=20%  Similarity=0.168  Sum_probs=55.0

Q ss_pred             CCCCEEEEEcCcc-cHHHHHhc----c-ceEEEeccCC--------CCcEEEccCCCCCC---------CCCCccEEEEc
Q 022592          140 SPSLVIADFGCGD-ARLAKSVK----N-KVFSFDLVSN--------DPSVIACDMSNTPL---------NSSSVDVAVFC  196 (294)
Q Consensus       140 ~~~~~VLDiGcG~-G~~~~~l~----~-~v~gvD~s~~--------~~~~~~~d~~~lp~---------~~~~fD~Vi~~  196 (294)
                      .++.+||-+|||. |.++..++    . +|+++|.++.        ...++  |.....+         ....+|+|+-+
T Consensus       184 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~i--~~~~~~~~~~~~~~~~~g~g~Dvvid~  261 (398)
T 2dph_A          184 KPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDAGFETI--DLRNSAPLRDQIDQILGKPEVDCGVDA  261 (398)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTTTCEEE--ETTSSSCHHHHHHHHHSSSCEEEEEEC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEE--cCCCcchHHHHHHHHhCCCCCCEEEEC
Confidence            4778999999976 66666554    3 7999998862        22222  3222111         12259999876


Q ss_pred             cccc---------CCCHHHHHHHHHHhcCcCcEEEEEee
Q 022592          197 LSLM---------GINFPNYLQEAQRVLKPSGWLLIAEV  226 (294)
Q Consensus       197 ~~l~---------~~~~~~~l~el~r~LkpgG~l~i~e~  226 (294)
                      ..-.         |.++...+..+.++|++||.++++..
T Consensus       262 ~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~G~  300 (398)
T 2dph_A          262 VGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIPGI  300 (398)
T ss_dssp             SCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECCSC
T ss_pred             CCCccccccccccccccHHHHHHHHHHHhcCCEEEEecc
Confidence            5432         12234578899999999999987643

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=90.05  E-value=0.22  Score=43.74  Aligned_cols=116  Identities=9%  Similarity=0.017  Sum_probs=75.1

Q ss_pred             HHHHHhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccC-------------CCCcEEEccCCC-CC---CCCCCc
Q 022592          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS-------------NDPSVIACDMSN-TP---LNSSSV  190 (294)
Q Consensus       131 ~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~-------------~~~~~~~~d~~~-lp---~~~~~f  190 (294)
                      .+++.+... .+..+||+=+|||.++..+.   .+++.+|.++             .++.++..|... +.   -+...|
T Consensus        82 ~yf~~l~~~-n~~~~LDlfaGSGaLgiEaLS~~d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~~~~~f  160 (283)
T 2oo3_A           82 EYISVIKQI-NLNSTLSYYPGSPYFAINQLRSQDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPPPEKR  160 (283)
T ss_dssp             HHHHHHHHH-SSSSSCCEEECHHHHHHHHSCTTSEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCSCTTSC
T ss_pred             HHHHHHHHh-cCCCceeEeCCcHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcCCCCCc
Confidence            344444433 34568999999999999886   3899999887             245667777533 11   223569


Q ss_pred             cEEEEcccccC-CCHHHHHHHHHH--hcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeE
Q 022592          191 DVAVFCLSLMG-INFPNYLQEAQR--VLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAP  253 (294)
Q Consensus       191 D~Vi~~~~l~~-~~~~~~l~el~r--~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~  253 (294)
                      |+|++....+. .+...++..+.+  .+.|+|.+++  |.+...    .-..+.+.+.|++.|..+
T Consensus       161 dLVfiDPPYe~k~~~~~vl~~L~~~~~r~~~Gi~v~--WYPi~~----~~~~~~~~~~l~~~~~~~  220 (283)
T 2oo3_A          161 GLIFIDPSYERKEEYKEIPYAIKNAYSKFSTGLYCV--WYPVVN----KAWTEQFLRKMREISSKS  220 (283)
T ss_dssp             EEEEECCCCCSTTHHHHHHHHHHHHHHHCTTSEEEE--EEEESS----HHHHHHHHHHHHHHCSSE
T ss_pred             cEEEECCCCCCCcHHHHHHHHHHHhCccCCCeEEEE--EEeccc----hHHHHHHHHHHHhcCCCe
Confidence            99999888874 466777766665  5678888777  221111    112356667777667633

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=89.75  E-value=2.8  Score=37.54  Aligned_cols=109  Identities=13%  Similarity=0.087  Sum_probs=68.4

Q ss_pred             CEEEEEcCcccHHHHHhc------cceEEEeccC----------CCCcEEEccCCCCCC---CCCCccEEEEcccccCC-
Q 022592          143 LVIADFGCGDARLAKSVK------NKVFSFDLVS----------NDPSVIACDMSNTPL---NSSSVDVAVFCLSLMGI-  202 (294)
Q Consensus       143 ~~VLDiGcG~G~~~~~l~------~~v~gvD~s~----------~~~~~~~~d~~~lp~---~~~~fD~Vi~~~~l~~~-  202 (294)
                      .+++|+-||.|.+...+.      ..|.++|+.+          ....++.+|+.++..   +...+|+++....-..+ 
T Consensus         4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~~~~~~~~DI~~~~~~~~~~~~~D~l~ggpPCQ~fS   83 (333)
T 4h0n_A            4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFPETNLLNRNIQQLTPQVIKKWNVDTILMSPPCQPFT   83 (333)
T ss_dssp             EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECCCGGGCCHHHHHHTTCCEEEECCCCCCSE
T ss_pred             CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCCCCceeccccccCCHHHhccCCCCEEEecCCCcchh
Confidence            479999999999877664      2477999987          344577788877642   22358999965443321 


Q ss_pred             ---------CHH-HHHHHHHH---hcC-cCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEE
Q 022592          203 ---------NFP-NYLQEAQR---VLK-PSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSK  256 (294)
Q Consensus       203 ---------~~~-~~l~el~r---~Lk-pgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~  256 (294)
                               |.. ..+.++.+   .++ |  .+++.|=...+...   -..+.+.+.|++.||.+...
T Consensus        84 ~ag~~~~~~d~r~~L~~~~~r~i~~~~~P--~~~vlENV~gl~~~---~~~~~i~~~l~~~GY~v~~~  146 (333)
T 4h0n_A           84 RNGKYLDDNDPRTNSFLYLIGILDQLDNV--DYILMENVKGFENS---TVRNLFIDKLKECNFIYQEF  146 (333)
T ss_dssp             ETTEECCTTCTTSCCHHHHHHHGGGCTTC--CEEEEEECTTGGGS---HHHHHHHHHHHHTTEEEEEE
T ss_pred             hhhhccCCcCcccccHHHHHHHHHHhcCC--CEEEEecchhhhhh---hHHHHHHHHHHhCCCeEEEE
Confidence                     211 23333444   444 5  55666644333211   13578889999999988773

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=88.33  E-value=0.63  Score=44.04  Aligned_cols=111  Identities=12%  Similarity=0.170  Sum_probs=67.3

Q ss_pred             CCEEEEEcCcccHHHHHhc----cceEEEeccC-------------CCCcEEEccCCCCCCC-----------------C
Q 022592          142 SLVIADFGCGDARLAKSVK----NKVFSFDLVS-------------NDPSVIACDMSNTPLN-----------------S  187 (294)
Q Consensus       142 ~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~-------------~~~~~~~~d~~~lp~~-----------------~  187 (294)
                      ..+++|+=||.|.+...+.    ..|+++|+.+             +...++.+|+..+...                 .
T Consensus        88 ~~~viDLFaG~GGlslG~~~aG~~~v~avE~d~~A~~ty~~N~~~~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~i~~~~  167 (482)
T 3me5_A           88 AFRFIDLFAGIGGIRRGFESIGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIRDITLSHQEGVSDEAAAEHIRQHI  167 (482)
T ss_dssp             SEEEEEESCTTSHHHHHHHTTTEEEEEEECCCHHHHHHHHHHSCCCTTTCEEESCTHHHHCTTCTTSCHHHHHHHHHHHS
T ss_pred             cceEEEecCCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhcccCCCcceeccchhhhhhccccccchhhHHhhhhhcC
Confidence            3589999999999887775    2578999876             1345677888664311                 1


Q ss_pred             CCccEEEEcccccCCC-------------------H-HHHHHH---HHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHH
Q 022592          188 SSVDVAVFCLSLMGIN-------------------F-PNYLQE---AQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSK  244 (294)
Q Consensus       188 ~~fD~Vi~~~~l~~~~-------------------~-~~~l~e---l~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~  244 (294)
                      ..+|+++....-..++                   . ..++.+   +.+.++|  .+++.|=...+.....+.....+..
T Consensus       168 ~~~Dvl~gGpPCQ~FS~AG~~k~~~~g~~~G~~~D~R~~Lf~e~~riI~~~rP--k~fvlENV~gl~s~~~g~~f~~i~~  245 (482)
T 3me5_A          168 PEHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFACDTQGTLFFDVVRIIDARRP--AMFVLENVKNLKSHDKGKTFRIIMQ  245 (482)
T ss_dssp             CCCSEEEEECCCCCC------------------CTTTTSHHHHHHHHHHHHCC--SEEEEEEETTTTTGGGGHHHHHHHH
T ss_pred             CCCCEEEecCCCcchhhhCcccccccccccccccCccccHHHHHHHHHHHcCC--cEEEEeCcHHHhcccCCcHHHHHHH
Confidence            3589998655443211                   0 012333   3444567  4555553333322222234567888


Q ss_pred             HHHHCCCeEE
Q 022592          245 AVCDLGFAPV  254 (294)
Q Consensus       245 ~l~~~Gf~~~  254 (294)
                      .|+..||.+.
T Consensus       246 ~L~~lGY~v~  255 (482)
T 3me5_A          246 TLDELGYDVA  255 (482)
T ss_dssp             HHHHTTEEET
T ss_pred             HHhcCCcEEE
Confidence            9999999874

>3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3}

Probab=88.20  E-value=0.61  Score=37.22  Aligned_cols=91  Identities=12%  Similarity=0.169  Sum_probs=54.1

Q ss_pred             HHHHhhccCCCCEEEEEcCcccHHHHHhc-----cceEEEeccC--------CCCcEEEccCCC-CCCC----CCCccEE
Q 022592          132 IVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS--------NDPSVIACDMSN-TPLN----SSSVDVA  193 (294)
Q Consensus       132 ~~~~l~~~~~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~--------~~~~~~~~d~~~-lp~~----~~~fD~V  193 (294)
                      ++..+...  ..-|||+|-|+|+.--.|.     ..++++|-.-        +.-.++.+|+.+ +|..    ....-++
T Consensus        33 a~~~v~~~--~GpVlElGLGNGRTydHLRe~~P~R~I~vfDR~~~~hp~~~P~~e~~ilGdi~~tL~~~~~r~g~~a~La  110 (174)
T 3iht_A           33 AIAQTAGL--SGPVYELGLGNGRTYHHLRQHVQGREIYVFERAVASHPDSTPPEAQLILGDIRETLPATLERFGATASLV  110 (174)
T ss_dssp             HHHHTTTC--CSCEEEECCTTCHHHHHHHHHCCSSCEEEEESSCCCCGGGCCCGGGEEESCHHHHHHHHHHHHCSCEEEE
T ss_pred             HHHHhcCC--CCceEEecCCCChhHHHHHHhCCCCcEEEEEeeeccCCCCCCchHheecccHHHHHHHHHHhcCCceEEE
Confidence            44444433  3479999999998666554     4788888543        455788888865 3321    2333444


Q ss_pred             EEcccccCCCHH-----HHHHHHHHhcCcCcEEEEE
Q 022592          194 VFCLSLMGINFP-----NYLQEAQRVLKPSGWLLIA  224 (294)
Q Consensus       194 i~~~~l~~~~~~-----~~l~el~r~LkpgG~l~i~  224 (294)
                      .+....+..+..     .+-.-+..+|.|||+++-.
T Consensus       111 HaD~G~g~~~~d~a~a~~lsplI~~~la~GGi~vS~  146 (174)
T 3iht_A          111 HADLGGHNREKNDRFARLISPLIEPHLAQGGLMVSS  146 (174)
T ss_dssp             EECCCCSCHHHHHHHHHHHHHHHGGGEEEEEEEEES
T ss_pred             EeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeC
Confidence            443333332111     2223456789999988774

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=87.93  E-value=0.94  Score=40.85  Aligned_cols=82  Identities=17%  Similarity=0.280  Sum_probs=52.6

Q ss_pred             CCCCEEEEEcCcc-cHHHHHhc----c-ceEEEeccCCCC--------c-EEEccCCCC-----CCCCCCccEEEEcccc
Q 022592          140 SPSLVIADFGCGD-ARLAKSVK----N-KVFSFDLVSNDP--------S-VIACDMSNT-----PLNSSSVDVAVFCLSL  199 (294)
Q Consensus       140 ~~~~~VLDiGcG~-G~~~~~l~----~-~v~gvD~s~~~~--------~-~~~~d~~~l-----p~~~~~fD~Vi~~~~l  199 (294)
                      .++.+||-+|+|. |.++..++    . .|+++|.++.+.        . ++..+-.++     ....+.+|+|+-+.. 
T Consensus       189 ~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~~~gg~D~vid~~g-  267 (371)
T 1f8f_A          189 TPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALESTG-  267 (371)
T ss_dssp             CTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEECSC-
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCCEEecCCccCHHHHHHHhcCCCCcEEEECCC-
Confidence            4678999999875 66665554    3 589999877321        1 221111111     011236999886543 


Q ss_pred             cCCCHHHHHHHHHHhcCcCcEEEEEee
Q 022592          200 MGINFPNYLQEAQRVLKPSGWLLIAEV  226 (294)
Q Consensus       200 ~~~~~~~~l~el~r~LkpgG~l~i~e~  226 (294)
                          ....+..+.++|++||.++++..
T Consensus       268 ----~~~~~~~~~~~l~~~G~iv~~G~  290 (371)
T 1f8f_A          268 ----SPEILKQGVDALGILGKIAVVGA  290 (371)
T ss_dssp             ----CHHHHHHHHHTEEEEEEEEECCC
T ss_pred             ----CHHHHHHHHHHHhcCCEEEEeCC
Confidence                24678899999999999988654

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=87.92  E-value=0.76  Score=39.49  Aligned_cols=73  Identities=12%  Similarity=0.053  Sum_probs=46.7

Q ss_pred             cEEEccCCCC--CCCCCCccEEEEcccccCC---------------CHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCC
Q 022592          174 SVIACDMSNT--PLNSSSVDVAVFCLSLMGI---------------NFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGG  236 (294)
Q Consensus       174 ~~~~~d~~~l--p~~~~~fD~Vi~~~~l~~~---------------~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~  236 (294)
                      .++++|+...  .+++++||+|++..-..-.               -....+.++.++|+|||.+++.- . .       
T Consensus         6 ~l~~gD~~~~l~~l~~~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~~-~-d-------   76 (260)
T 1g60_A            6 KIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFN-T-P-------   76 (260)
T ss_dssp             SEEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEE-C-H-------
T ss_pred             eEEechHHHHHHhccccccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEEc-C-c-------
Confidence            4566665431  1346788888876654321               12467888999999999998852 1 1       


Q ss_pred             CCHHHHHHHHHHCCCeEEE
Q 022592          237 ADPNKFSKAVCDLGFAPVS  255 (294)
Q Consensus       237 ~~~~~~~~~l~~~Gf~~~~  255 (294)
                      +....+..++.+.||....
T Consensus        77 ~~~~~~~~~~~~~gf~~~~   95 (260)
T 1g60_A           77 FNCAFICQYLVSKGMIFQN   95 (260)
T ss_dssp             HHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHHHhhccceeE
Confidence            1124566678889997654

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=87.37  E-value=0.86  Score=41.54  Aligned_cols=85  Identities=21%  Similarity=0.183  Sum_probs=55.3

Q ss_pred             CCCCEEEEEcCcc-cHHHHHhc----c-ceEEEeccCCC--------CcEEEccCCCCC--------C-CCCCccEEEEc
Q 022592          140 SPSLVIADFGCGD-ARLAKSVK----N-KVFSFDLVSND--------PSVIACDMSNTP--------L-NSSSVDVAVFC  196 (294)
Q Consensus       140 ~~~~~VLDiGcG~-G~~~~~l~----~-~v~gvD~s~~~--------~~~~~~d~~~lp--------~-~~~~fD~Vi~~  196 (294)
                      .++.+||-+|+|. |.++..++    . .|+++|.++.+        ...+  |.....        . ....+|+|+-+
T Consensus       184 ~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~lGa~~i--~~~~~~~~~~~v~~~t~g~g~Dvvid~  261 (398)
T 1kol_A          184 GPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIA--DLSLDTPLHEQIAALLGEPEVDCAVDA  261 (398)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEE--ETTSSSCHHHHHHHHHSSSCEEEEEEC
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHcCCcEE--ccCCcchHHHHHHHHhCCCCCCEEEEC
Confidence            4678999999865 66665554    3 68999988732        2222  222111        0 12359999876


Q ss_pred             ccc----------cCCCHHHHHHHHHHhcCcCcEEEEEee
Q 022592          197 LSL----------MGINFPNYLQEAQRVLKPSGWLLIAEV  226 (294)
Q Consensus       197 ~~l----------~~~~~~~~l~el~r~LkpgG~l~i~e~  226 (294)
                      ..-          ++.++...+..+.++|++||.++++..
T Consensus       262 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G~  301 (398)
T 1kol_A          262 VGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGL  301 (398)
T ss_dssp             CCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSC
T ss_pred             CCCcccccccccccccchHHHHHHHHHHHhcCCEEEEecc
Confidence            542          234556688999999999999988653

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=87.10  E-value=0.72  Score=41.24  Aligned_cols=79  Identities=14%  Similarity=0.159  Sum_probs=51.8

Q ss_pred             CCCCEEEEEcCcc-cHHHHHhc----cceEEEeccCCCCc--------EEEccCCCCCCCCCCccEEEEcccccCCCHHH
Q 022592          140 SPSLVIADFGCGD-ARLAKSVK----NKVFSFDLVSNDPS--------VIACDMSNTPLNSSSVDVAVFCLSLMGINFPN  206 (294)
Q Consensus       140 ~~~~~VLDiGcG~-G~~~~~l~----~~v~gvD~s~~~~~--------~~~~d~~~lp~~~~~fD~Vi~~~~l~~~~~~~  206 (294)
                      .++.+||-+|+|. |.++..++    .+|+++|.++.+..        .+..+...+  . ..+|+|+-+..-     ..
T Consensus       175 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~--~-~~~D~vid~~g~-----~~  246 (348)
T 3two_A          175 TKGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALSMGVKHFYTDPKQC--K-EELDFIISTIPT-----HY  246 (348)
T ss_dssp             CTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHHTTCSEEESSGGGC--C-SCEEEEEECCCS-----CC
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhcCCCeecCCHHHH--h-cCCCEEEECCCc-----HH
Confidence            4678999999874 55555554    48999998885332        222222222  1 268998865432     22


Q ss_pred             HHHHHHHhcCcCcEEEEEee
Q 022592          207 YLQEAQRVLKPSGWLLIAEV  226 (294)
Q Consensus       207 ~l~el~r~LkpgG~l~i~e~  226 (294)
                      .+..+.++|+|+|.++++..
T Consensus       247 ~~~~~~~~l~~~G~iv~~G~  266 (348)
T 3two_A          247 DLKDYLKLLTYNGDLALVGL  266 (348)
T ss_dssp             CHHHHHTTEEEEEEEEECCC
T ss_pred             HHHHHHHHHhcCCEEEEECC
Confidence            57788899999999998754

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=87.09  E-value=1.5  Score=39.00  Aligned_cols=78  Identities=21%  Similarity=0.289  Sum_probs=45.4

Q ss_pred             EccCCC-C-CCCCCCccEEEEcccccC--------CC----HHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHH
Q 022592          177 ACDMSN-T-PLNSSSVDVAVFCLSLMG--------IN----FPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKF  242 (294)
Q Consensus       177 ~~d~~~-l-p~~~~~fD~Vi~~~~l~~--------~~----~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~  242 (294)
                      ++|+.. + .+++++||+|+...-..-        .+    ....+.++.++|+|||.+++.- ...............+
T Consensus        44 ~gD~l~~L~~l~~~svDlI~tDPPY~~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i~~-~~~~~~~~~~~~l~~l  122 (319)
T 1eg2_A           44 VCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFG-GLQYQGEAGSGDLISI  122 (319)
T ss_dssp             ECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEE-CSCCCCCTTBCCHHHH
T ss_pred             CCcHHHHHHhCccCCcCEEEECCCCCCCCCCccCHHHHHHHHHHHHHHHHHHcCCCeEEEEEc-CcccccccccccHHHH
Confidence            555533 1 134567888777654431        12    3467888899999999998852 2222111111244566


Q ss_pred             HHHHHHCC-CeEEE
Q 022592          243 SKAVCDLG-FAPVS  255 (294)
Q Consensus       243 ~~~l~~~G-f~~~~  255 (294)
                      ..++...| |....
T Consensus       123 ~~~i~~~G~~~~~~  136 (319)
T 1eg2_A          123 ISHMRQNSKMLLAN  136 (319)
T ss_dssp             HHHHHHHCCCEEEE
T ss_pred             HHHHhCcccceeEE
Confidence            67777777 76654

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=86.33  E-value=0.44  Score=42.85  Aligned_cols=81  Identities=15%  Similarity=0.207  Sum_probs=51.4

Q ss_pred             CCCCEEEEEcCcc-cHHHHHhc----c-ceEEEeccCCC--------CcEEEccCC-----C----C-CCCCCCccEEEE
Q 022592          140 SPSLVIADFGCGD-ARLAKSVK----N-KVFSFDLVSND--------PSVIACDMS-----N----T-PLNSSSVDVAVF  195 (294)
Q Consensus       140 ~~~~~VLDiGcG~-G~~~~~l~----~-~v~gvD~s~~~--------~~~~~~d~~-----~----l-p~~~~~fD~Vi~  195 (294)
                      .++.+||-+|+|. |.++..++    . .|+++|.++.+        ...+ .|..     +    + ......+|+|+-
T Consensus       170 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~v-i~~~~~~~~~~~~~i~~~~~~g~D~vid  248 (356)
T 1pl8_A          170 TLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLV-LQISKESPQEIARKVEGQLGCKPEVTIE  248 (356)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEE-EECSSCCHHHHHHHHHHHHTSCCSEEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEE-EcCcccccchHHHHHHHHhCCCCCEEEE
Confidence            4678999999875 55555554    3 79999987732        1111 1211     0    0 000145899886


Q ss_pred             cccccCCCHHHHHHHHHHhcCcCcEEEEEee
Q 022592          196 CLSLMGINFPNYLQEAQRVLKPSGWLLIAEV  226 (294)
Q Consensus       196 ~~~l~~~~~~~~l~el~r~LkpgG~l~i~e~  226 (294)
                      +..     -...+..+.++|+|||.++++..
T Consensus       249 ~~g-----~~~~~~~~~~~l~~~G~iv~~G~  274 (356)
T 1pl8_A          249 CTG-----AEASIQAGIYATRSGGTLVLVGL  274 (356)
T ss_dssp             CSC-----CHHHHHHHHHHSCTTCEEEECSC
T ss_pred             CCC-----ChHHHHHHHHHhcCCCEEEEEec
Confidence            543     24578889999999999988643

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=86.13  E-value=1.2  Score=35.99  Aligned_cols=80  Identities=18%  Similarity=0.216  Sum_probs=50.4

Q ss_pred             CCCCEEEEEcC--cccHHHHHhc----cceEEEeccCC--------CCcEEEccCCCCC--------CCCCCccEEEEcc
Q 022592          140 SPSLVIADFGC--GDARLAKSVK----NKVFSFDLVSN--------DPSVIACDMSNTP--------LNSSSVDVAVFCL  197 (294)
Q Consensus       140 ~~~~~VLDiGc--G~G~~~~~l~----~~v~gvD~s~~--------~~~~~~~d~~~lp--------~~~~~fD~Vi~~~  197 (294)
                      .++.+||.+|+  |.|..+..++    .+|+++|.++.        .... ..|..+..        .....+|+|+.+.
T Consensus        37 ~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~g~~~-~~d~~~~~~~~~~~~~~~~~~~D~vi~~~  115 (198)
T 1pqw_A           37 SPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGVEY-VGDSRSVDFADEILELTDGYGVDVVLNSL  115 (198)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCCSE-EEETTCSTHHHHHHHHTTTCCEEEEEECC
T ss_pred             CCCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCE-EeeCCcHHHHHHHHHHhCCCCCeEEEECC
Confidence            36779999995  3454444333    47889987752        1122 22332211        1123599999765


Q ss_pred             cccCCCHHHHHHHHHHhcCcCcEEEEEee
Q 022592          198 SLMGINFPNYLQEAQRVLKPSGWLLIAEV  226 (294)
Q Consensus       198 ~l~~~~~~~~l~el~r~LkpgG~l~i~e~  226 (294)
                      .      ...+..+.++|+|||.++++..
T Consensus       116 g------~~~~~~~~~~l~~~G~~v~~g~  138 (198)
T 1pqw_A          116 A------GEAIQRGVQILAPGGRFIELGK  138 (198)
T ss_dssp             C------THHHHHHHHTEEEEEEEEECSC
T ss_pred             c------hHHHHHHHHHhccCCEEEEEcC
Confidence            4      3578889999999999988643

>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*

Probab=84.04  E-value=6  Score=34.93  Aligned_cols=83  Identities=12%  Similarity=0.083  Sum_probs=56.9

Q ss_pred             CEEEEEcCcccHHHHHhc----cceEEEeccC-----------------CCCcEEEccCCCCC---------CCCCCccE
Q 022592          143 LVIADFGCGDARLAKSVK----NKVFSFDLVS-----------------NDPSVIACDMSNTP---------LNSSSVDV  192 (294)
Q Consensus       143 ~~VLDiGcG~G~~~~~l~----~~v~gvD~s~-----------------~~~~~~~~d~~~lp---------~~~~~fD~  192 (294)
                      ..||+||||-=..+..+.    ..++-+|...                 .+..++.+|+.+ .         +.....=+
T Consensus       104 ~QvV~LGaGlDTra~Rl~~~~~~~v~evD~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d-~~~~~l~~~g~d~~~Pt~  182 (310)
T 2uyo_A          104 RQFVILASGLDSRAYRLDWPTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQ-DWPPALRSAGFDPSARTA  182 (310)
T ss_dssp             CEEEEETCTTCCHHHHSCCCTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTS-CHHHHHHHTTCCTTSCEE
T ss_pred             CeEEEeCCCCCchhhhccCCCCcEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEecchHh-hHHHHHHhccCCCCCCEE
Confidence            479999999877766665    2566777422                 345688888876 2         11233457


Q ss_pred             EEEcccccCCC---HHHHHHHHHHhcCcCcEEEEEee
Q 022592          193 AVFCLSLMGIN---FPNYLQEAQRVLKPSGWLLIAEV  226 (294)
Q Consensus       193 Vi~~~~l~~~~---~~~~l~el~r~LkpgG~l~i~e~  226 (294)
                      +++-.+|++.+   ...+++.+...+.||+.|++..+
T Consensus       183 ~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~d~~  219 (310)
T 2uyo_A          183 WLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETS  219 (310)
T ss_dssp             EEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECC
T ss_pred             EEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEEEec
Confidence            77788888864   45778888888888888888643

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=83.23  E-value=2.5  Score=37.49  Aligned_cols=81  Identities=19%  Similarity=0.255  Sum_probs=50.8

Q ss_pred             CCCCEEEEEcCcc--cHHHHHhc----cceEEEeccCCCCcEE-------EccCCCCC--------CCCCCccEEEEccc
Q 022592          140 SPSLVIADFGCGD--ARLAKSVK----NKVFSFDLVSNDPSVI-------ACDMSNTP--------LNSSSVDVAVFCLS  198 (294)
Q Consensus       140 ~~~~~VLDiGcG~--G~~~~~l~----~~v~gvD~s~~~~~~~-------~~d~~~lp--------~~~~~fD~Vi~~~~  198 (294)
                      .++.+||-+|+|.  |..+..++    .+|+++|.++.+..+.       ..|.....        .....+|+|+.+..
T Consensus       143 ~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lga~~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~g  222 (340)
T 3gms_A          143 QRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLRLGAAYVIDTSTAPLYETVMELTNGIGADAAIDSIG  222 (340)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESSC
T ss_pred             CCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhCCCcEEEeCCcccHHHHHHHHhCCCCCcEEEECCC
Confidence            4678999999874  44444443    4899999887543211       11222211        11236999987655


Q ss_pred             ccCCCHHHHHHHHHHhcCcCcEEEEEee
Q 022592          199 LMGINFPNYLQEAQRVLKPSGWLLIAEV  226 (294)
Q Consensus       199 l~~~~~~~~l~el~r~LkpgG~l~i~e~  226 (294)
                            ...+.++.++|++||.++++..
T Consensus       223 ------~~~~~~~~~~l~~~G~iv~~G~  244 (340)
T 3gms_A          223 ------GPDGNELAFSLRPNGHFLTIGL  244 (340)
T ss_dssp             ------HHHHHHHHHTEEEEEEEEECCC
T ss_pred             ------ChhHHHHHHHhcCCCEEEEEee
Confidence                  2334456689999999998754

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=83.08  E-value=1.4  Score=38.65  Aligned_cols=75  Identities=12%  Similarity=0.049  Sum_probs=46.5

Q ss_pred             CCCCEEEEEcCcc-cHHHHHhc----cceEEEeccCCCCc--------EEEccCCCCCCCCCCccEEEEcccccCCCHHH
Q 022592          140 SPSLVIADFGCGD-ARLAKSVK----NKVFSFDLVSNDPS--------VIACDMSNTPLNSSSVDVAVFCLSLMGINFPN  206 (294)
Q Consensus       140 ~~~~~VLDiGcG~-G~~~~~l~----~~v~gvD~s~~~~~--------~~~~d~~~lp~~~~~fD~Vi~~~~l~~~~~~~  206 (294)
                      .++.+||=+|+|. |.++..++    .+|++++ ++.+..        .+..|...+   ...+|+|+-+..      ..
T Consensus       141 ~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~-~~~~~~~~~~lGa~~v~~d~~~v---~~g~Dvv~d~~g------~~  210 (315)
T 3goh_A          141 TKQREVLIVGFGAVNNLLTQMLNNAGYVVDLVS-ASLSQALAAKRGVRHLYREPSQV---TQKYFAIFDAVN------SQ  210 (315)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEC-SSCCHHHHHHHTEEEEESSGGGC---CSCEEEEECC----------
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE-ChhhHHHHHHcCCCEEEcCHHHh---CCCccEEEECCC------ch
Confidence            4678999999953 55555554    4899999 775332        222232222   456999886543      12


Q ss_pred             HHHHHHHhcCcCcEEEEE
Q 022592          207 YLQEAQRVLKPSGWLLIA  224 (294)
Q Consensus       207 ~l~el~r~LkpgG~l~i~  224 (294)
                      .+..+.++|+|+|.++++
T Consensus       211 ~~~~~~~~l~~~G~~v~~  228 (315)
T 3goh_A          211 NAAALVPSLKANGHIICI  228 (315)
T ss_dssp             ---TTGGGEEEEEEEEEE
T ss_pred             hHHHHHHHhcCCCEEEEE
Confidence            336678999999999887

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=81.34  E-value=16  Score=33.00  Aligned_cols=117  Identities=11%  Similarity=0.074  Sum_probs=66.9

Q ss_pred             HHHHhhccCCCCEEEEEcCcccHHHHHhc-cceEEEeccC------------CCC---cEEEccCCCCCCCCCCccEEEE
Q 022592          132 IVKWLKDHSPSLVIADFGCGDARLAKSVK-NKVFSFDLVS------------NDP---SVIACDMSNTPLNSSSVDVAVF  195 (294)
Q Consensus       132 ~~~~l~~~~~~~~VLDiGcG~G~~~~~l~-~~v~gvD~s~------------~~~---~~~~~d~~~lp~~~~~fD~Vi~  195 (294)
                      +++.+.....+..||.|+.+.|.++..++ ..++.+.-|-            ..+   .+...+...  -....||+|+.
T Consensus        29 ll~~~~~~~~~~~~~~~~d~~gal~~~~~~~~~~~~~ds~~~~~~~~~n~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~  106 (375)
T 4dcm_A           29 LLQQLDDTEIRGPVLILNDAFGALSCALAEHKPYSIGDSYISELATRENLRLNGIDESSVKFLDSTA--DYPQQPGVVLI  106 (375)
T ss_dssp             HHHTTTTCCCCSCEEEECCSSSHHHHHTGGGCCEEEESCHHHHHHHHHHHHHTTCCGGGSEEEETTS--CCCSSCSEEEE
T ss_pred             HHHhhhhccCCCCEEEECCCCCHHHHhhccCCceEEEhHHHHHHHHHHHHHHcCCCccceEeccccc--ccccCCCEEEE
Confidence            45554433244579999999999998887 3555552221            111   112222211  12356999887


Q ss_pred             cccccCCCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEEecc
Q 022592          196 CLSLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSKDFS  259 (294)
Q Consensus       196 ~~~l~~~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~  259 (294)
                      ...=.-......|..+...|.||+.+++..-....        ...+.+.|++. +..+.....
T Consensus       107 ~lpk~~~~l~~~L~~l~~~l~~~~~i~~~g~~~~~--------~~~~~~~l~~~-~~~~~~~~a  161 (375)
T 4dcm_A          107 KVPKTLALLEQQLRALRKVVTSDTRIIAGAKARDI--------HTSTLELFEKV-LGPTTTTLA  161 (375)
T ss_dssp             ECCSCHHHHHHHHHHHHTTCCTTSEEEEEEEGGGC--------CHHHHHHHHHH-TCCEEECCC
T ss_pred             EcCCCHHHHHHHHHHHHhhCCCCCEEEEEecccch--------HHHHHHHHHhh-cCccchhhh
Confidence            53321124557788899999999999887543222        14566666664 333433333

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=81.27  E-value=1.7  Score=39.22  Aligned_cols=81  Identities=21%  Similarity=0.270  Sum_probs=51.6

Q ss_pred             CCCCEEEEEcCcc-cHHHHHhc----c-ceEEEeccCCCC--------cEEEccCCCCC----------CCCCCccEEEE
Q 022592          140 SPSLVIADFGCGD-ARLAKSVK----N-KVFSFDLVSNDP--------SVIACDMSNTP----------LNSSSVDVAVF  195 (294)
Q Consensus       140 ~~~~~VLDiGcG~-G~~~~~l~----~-~v~gvD~s~~~~--------~~~~~d~~~lp----------~~~~~fD~Vi~  195 (294)
                      .++.+||-+|+|. |.++..++    . .|+++|.++.+.        ..+. |.....          ...+.+|+|+-
T Consensus       181 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi-~~~~~~~~~~i~~~~~~~~gg~Dvvid  259 (370)
T 4ej6_A          181 KAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATATV-DPSAGDVVEAIAGPVGLVPGGVDVVIE  259 (370)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEE-CTTSSCHHHHHHSTTSSSTTCEEEEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEE-CCCCcCHHHHHHhhhhccCCCCCEEEE
Confidence            4778999999864 55555554    3 788998876321        1111 111100          22347999886


Q ss_pred             cccccCCCHHHHHHHHHHhcCcCcEEEEEee
Q 022592          196 CLSLMGINFPNYLQEAQRVLKPSGWLLIAEV  226 (294)
Q Consensus       196 ~~~l~~~~~~~~l~el~r~LkpgG~l~i~e~  226 (294)
                      +..     -...+..+.++|++||.++++..
T Consensus       260 ~~G-----~~~~~~~~~~~l~~~G~vv~~G~  285 (370)
T 4ej6_A          260 CAG-----VAETVKQSTRLAKAGGTVVILGV  285 (370)
T ss_dssp             CSC-----CHHHHHHHHHHEEEEEEEEECSC
T ss_pred             CCC-----CHHHHHHHHHHhccCCEEEEEec
Confidence            533     25678899999999999998643

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=81.25  E-value=0.63  Score=41.31  Aligned_cols=81  Identities=11%  Similarity=0.050  Sum_probs=51.8

Q ss_pred             CCCCEEEEEcCc--ccHHHHHhc----cceEEEeccCCCCcE--------EEccCCCCC-------CCCCCccEEEEccc
Q 022592          140 SPSLVIADFGCG--DARLAKSVK----NKVFSFDLVSNDPSV--------IACDMSNTP-------LNSSSVDVAVFCLS  198 (294)
Q Consensus       140 ~~~~~VLDiGcG--~G~~~~~l~----~~v~gvD~s~~~~~~--------~~~d~~~lp-------~~~~~fD~Vi~~~~  198 (294)
                      .++.+||-+|++  .|..+..++    .+|+++|.++.+...        ...|..+..       ...+.+|+|+.+..
T Consensus       148 ~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g  227 (336)
T 4b7c_A          148 KNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEELGFDGAIDYKNEDLAAGLKRECPKGIDVFFDNVG  227 (336)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCCSEEEETTTSCHHHHHHHHCTTCEEEEEESSC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCCEEEECCCHHHHHHHHHhcCCCceEEEECCC
Confidence            477899999983  455554443    489999987632111        112222211       11246999887655


Q ss_pred             ccCCCHHHHHHHHHHhcCcCcEEEEEee
Q 022592          199 LMGINFPNYLQEAQRVLKPSGWLLIAEV  226 (294)
Q Consensus       199 l~~~~~~~~l~el~r~LkpgG~l~i~e~  226 (294)
                            ...+..+.++|+++|.++++..
T Consensus       228 ------~~~~~~~~~~l~~~G~iv~~G~  249 (336)
T 4b7c_A          228 ------GEILDTVLTRIAFKARIVLCGA  249 (336)
T ss_dssp             ------HHHHHHHHTTEEEEEEEEECCC
T ss_pred             ------cchHHHHHHHHhhCCEEEEEee
Confidence                  3578899999999999998643

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=81.19  E-value=1.6  Score=39.14  Aligned_cols=81  Identities=12%  Similarity=0.078  Sum_probs=50.9

Q ss_pred             CCCCEEEEEcCcc-cHHHHHhc----cceEEEeccCCC--------Cc-EEEccCCCCC------CCCCCccEEEEcccc
Q 022592          140 SPSLVIADFGCGD-ARLAKSVK----NKVFSFDLVSND--------PS-VIACDMSNTP------LNSSSVDVAVFCLSL  199 (294)
Q Consensus       140 ~~~~~VLDiGcG~-G~~~~~l~----~~v~gvD~s~~~--------~~-~~~~d~~~lp------~~~~~fD~Vi~~~~l  199 (294)
                      .++.+||-+|+|. |.++..++    .+|+++|.++.+        .. ++..+..++.      .....+|+|+-+.. 
T Consensus       188 ~~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~~~g~g~D~vid~~g-  266 (363)
T 3uog_A          188 RAGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFALGADHGINRLEEDWVERVYALTGDRGADHILEIAG-  266 (363)
T ss_dssp             CTTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHTTCCEEEEEEETT-
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHHcCCCEEEcCCcccHHHHHHHHhCCCCceEEEECCC-
Confidence            4678999999774 55554444    489999987632        12 2221111110      11236999987654 


Q ss_pred             cCCCHHHHHHHHHHhcCcCcEEEEEee
Q 022592          200 MGINFPNYLQEAQRVLKPSGWLLIAEV  226 (294)
Q Consensus       200 ~~~~~~~~l~el~r~LkpgG~l~i~e~  226 (294)
                           ...+..+.++|+|||.++++..
T Consensus       267 -----~~~~~~~~~~l~~~G~iv~~G~  288 (363)
T 3uog_A          267 -----GAGLGQSLKAVAPDGRISVIGV  288 (363)
T ss_dssp             -----SSCHHHHHHHEEEEEEEEEECC
T ss_pred             -----hHHHHHHHHHhhcCCEEEEEec
Confidence                 2356778899999999998754

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=80.95  E-value=0.76  Score=40.89  Aligned_cols=80  Identities=14%  Similarity=0.172  Sum_probs=51.8

Q ss_pred             CCCCEEEEEcCcc-cHHHHHhc----cceEEEeccCCCC--------cEEEccCCCCCC------CCCCccEEEEccccc
Q 022592          140 SPSLVIADFGCGD-ARLAKSVK----NKVFSFDLVSNDP--------SVIACDMSNTPL------NSSSVDVAVFCLSLM  200 (294)
Q Consensus       140 ~~~~~VLDiGcG~-G~~~~~l~----~~v~gvD~s~~~~--------~~~~~d~~~lp~------~~~~fD~Vi~~~~l~  200 (294)
                      .++.+||-+|+|. |.++..++    .+|+++|.++.+.        ..+ .|..+..+      ..+.+|+|+.+..  
T Consensus       165 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~-i~~~~~~~~~~~~~~~g~~d~vid~~g--  241 (340)
T 3s2e_A          165 RPGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARRLGAEVA-VNARDTDPAAWLQKEIGGAHGVLVTAV--  241 (340)
T ss_dssp             CTTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEE-EETTTSCHHHHHHHHHSSEEEEEESSC--
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCEE-EeCCCcCHHHHHHHhCCCCCEEEEeCC--
Confidence            4678899999875 66666555    4899999887322        111 12211110      0135888876532  


Q ss_pred             CCCHHHHHHHHHHhcCcCcEEEEEe
Q 022592          201 GINFPNYLQEAQRVLKPSGWLLIAE  225 (294)
Q Consensus       201 ~~~~~~~l~el~r~LkpgG~l~i~e  225 (294)
                         -...+..+.++|+|+|.++++.
T Consensus       242 ---~~~~~~~~~~~l~~~G~iv~~G  263 (340)
T 3s2e_A          242 ---SPKAFSQAIGMVRRGGTIALNG  263 (340)
T ss_dssp             ---CHHHHHHHHHHEEEEEEEEECS
T ss_pred             ---CHHHHHHHHHHhccCCEEEEeC
Confidence               2567889999999999999864

>3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A*

Probab=80.29  E-value=31  Score=30.64  Aligned_cols=121  Identities=16%  Similarity=0.151  Sum_probs=74.1

Q ss_pred             HHhhccCCCCEEEEEcCcccHHHHHhc------cceEEEeccC-------------------------------------
Q 022592          134 KWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS-------------------------------------  170 (294)
Q Consensus       134 ~~l~~~~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~-------------------------------------  170 (294)
                      +++....+...|+-+|||.=.....+.      -.++=+|...                                     
T Consensus        83 ~fl~~~~~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s  162 (334)
T 3iei_A           83 AFLRKTECHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDFPMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDS  162 (334)
T ss_dssp             HHHHHTTTCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEECHHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEEC
T ss_pred             HHHHhCCCCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCcHHHHHHHHHHHhhchhhhhhhcccccccccccccccCCC
Confidence            344433245689999999766555443      1345555322                                     


Q ss_pred             CCCcEEEccCCCC----------CCCCCCccEEEEcccccCCCH---HHHHHHHHHhcCcCcEEEEEeecCCC-------
Q 022592          171 NDPSVIACDMSNT----------PLNSSSVDVAVFCLSLMGINF---PNYLQEAQRVLKPSGWLLIAEVKSRF-------  230 (294)
Q Consensus       171 ~~~~~~~~d~~~l----------p~~~~~fD~Vi~~~~l~~~~~---~~~l~el~r~LkpgG~l~i~e~~~~~-------  230 (294)
                      .+..++.+|+.+.          .+.....-++++-.+|.+.++   ..+|+.+.... |+|.++++|.....       
T Consensus       163 ~~y~~v~~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f-~~~~~i~yE~i~p~d~fg~~M  241 (334)
T 3iei_A          163 KRYAVIGADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSF-ERAMFINYEQVNMGDRFGQIM  241 (334)
T ss_dssp             SSEEEEECCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCTTSHHHHHH
T ss_pred             CceEEEccccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHhC-CCceEEEEeccCCCCHHHHHH
Confidence            3446778888662          133344568888888888654   46666666655 66777777643211       


Q ss_pred             -------CCCC----CCCCHHHHHHHHHHCCCeEEE
Q 022592          231 -------DPNT----GGADPNKFSKAVCDLGFAPVS  255 (294)
Q Consensus       231 -------~~~~----~~~~~~~~~~~l~~~Gf~~~~  255 (294)
                             +...    .+.+.+...+.|.++||..+.
T Consensus       242 ~~~l~~~g~pl~sl~~y~t~~~~~~r~~~~Gw~~~~  277 (334)
T 3iei_A          242 IENLRRRQCDLAGVETCKSLESQKERLLSNGWETAS  277 (334)
T ss_dssp             HHHHHTTTCCCTTGGGGGCHHHHHHHHHTTTCSEEE
T ss_pred             HHHHHHhCCCCcccccCCCHHHHHHHHHHcCCCcce
Confidence                   0011    114778889999999999865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	294
d1fp1d2	244	c.66.1.12 (D:129-372) Chalcone O-methyltransferase	1e-04
d2i6ga1	198	c.66.1.44 (A:1-198) Putative methyltransferase Teh	4e-04
d1nkva_	245	c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric	5e-04
d2gh1a1	281	c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac	5e-04
d1jqea_	280	c.66.1.19 (A:) Histamine methyltransferase {Human	0.002
d1xxla_	234	c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus	0.003
d1xvaa_	292	c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra	0.004

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score = 40.1 bits (93), Expect = 1e-04
 Identities = 20/143 (13%), Positives = 48/143 (33%), Gaps = 17/143 (11%)

Query: 96  GKEALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIVKWLKDHSPSLVIADFGCGDARL 155
           G    ++  ++  +  +++      M       +  +++          + D G G  R 
Sbjct: 40  GVTKYEFMGKDKKMNQIFNKS----MVDVCATEMKRMLEIYTGFEGISTLVDVGGGSGRN 95

Query: 156 AKSVKNKVFSFDLVSND-PSVI------------ACDMSNTPLNSSSVDVAVFCLSLMGI 202
            + + +K      ++ D P VI              DM  +     ++ +   C +    
Sbjct: 96  LELIISKYPLIKGINFDLPQVIENAPPLSGIEHVGGDMFASVPQGDAMILKAVCHNWSDE 155

Query: 203 NFPNYLQEAQRVLKPSGWLLIAE 225
               +L    + L P+G ++I E
Sbjct: 156 KCIEFLSNCHKALSPNGKVIIVE 178

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Length = 198

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

 Score = 38.4 bits (88), Expect = 4e-04
 Identities = 25/155 (16%), Positives = 47/155 (30%), Gaps = 27/155 (17%)

Query: 111 DMYHSGYQEQMSHWPELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVKNKVFSFDLVS 170
           + +   Y    +H      + ++   K  +P   + D GCG+ R +  +    +      
Sbjct: 7   NYFTEKYGLTRTH------SDVLAAAKVVAPGRTL-DLGCGNGRNSLYLAANGYDVTAWD 59

Query: 171 NDPSVIA-----------------CDMSNTPLNSSSVDVAVFCLSLMGINFPN---YLQE 210
            +P+ +A                     NT       D  +  + +M +        +  
Sbjct: 60  KNPASMANLERIKAAEGLDNLQTDLVDLNTLTFDGEYDFILSTVVMMFLEAQTIPGLIAN 119

Query: 211 AQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKA 245
            QR  KP G+ LI       D       P  F + 
Sbjct: 120 MQRCTKPGGYNLIVAAMDTPDFPCTVGFPFAFKEG 154

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

 Score = 38.4 bits (88), Expect = 5e-04
 Identities = 28/167 (16%), Positives = 50/167 (29%), Gaps = 22/167 (13%)

Query: 107 PALFDMYHSGYQEQMSHWPELPVNIIVKWLKDHSPSLVIADFGCGD----ARLAKSVKNK 162
           P +F +  S ++   + + E     + + L+   P   I D G G        A+     
Sbjct: 1   PRIFTISESEHR-IHNPFTEEKYATLGRVLRM-KPGTRILDLGSGSGEMLCTWARDHGIT 58

Query: 163 VFS---------------FDLVSNDPSVIACDMSNTPLNSSSVDVAVFCLSLMGI-NFPN 206
                              +L  ++      + +   + +   DVA    +      F  
Sbjct: 59  GTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANEKCDVAACVGATWIAGGFAG 118

Query: 207 YLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAP 253
             +   + LKP G +LI E   R  P T          +  D    P
Sbjct: 119 AEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLP 165

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

 Score = 38.7 bits (89), Expect = 5e-04
 Identities = 20/123 (16%), Positives = 38/123 (30%), Gaps = 20/123 (16%)

Query: 123 HWPELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVKNKV------------------- 163
           ++ +  V+ +V  +   +  + I D+GCG   L   +   +                   
Sbjct: 9   YYNDDYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEA 68

Query: 164 -FSFDLVSNDPSVIACDMSNTPLNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLL 222
              F L+  D   +  D +   LN            L        LQ+    +K  G ++
Sbjct: 69  RELFRLLPYDSEFLEGDATEIELNDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKII 128

Query: 223 IAE 225
             E
Sbjct: 129 CFE 131

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 280

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (84), Expect = 0.002
 Identities = 19/151 (12%), Positives = 37/151 (24%), Gaps = 36/151 (23%)

Query: 112 MYHSGYQEQMSHWPELPVNIIVKWLKDHSPSLVIADFGCGDARLA--------KSVKNKV 163
           + HS   + M  + +  +  I+  + D    + I   G G   +                
Sbjct: 11  LNHSTEHQCMQEFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVC 70

Query: 164 FSFDLVSNDPSVIA---------------------------CDMSNTPLNSSSVDVAVFC 196
            + ++V      IA                                        D     
Sbjct: 71  INNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMI 130

Query: 197 LSLMGI-NFPNYLQEAQRVLKPSGWLLIAEV 226
             L  + + P  L+    +L  +  +LI  V
Sbjct: 131 QMLYYVKDIPATLKFFHSLLGTNAKMLIIVV 161

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

 Score = 36.1 bits (82), Expect = 0.003
 Identities = 17/123 (13%), Positives = 36/123 (29%), Gaps = 20/123 (16%)

Query: 129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVKN---KVFSFDLVSNDPSVIACDMSNTPL 185
           + +++K   +      + D G G    A +      +    D       V +       +
Sbjct: 5   LGLMIKTA-ECRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGV 63

Query: 186 NSSSV---------------DVAVFCLSLMGI-NFPNYLQEAQRVLKPSGWLLIAEVKSR 229
            +                  D+     +     +    ++E  RVLK  G  L+ +  + 
Sbjct: 64  ENVRFQQGTAESLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAP 123

Query: 230 FDP 232
            DP
Sbjct: 124 EDP 126

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.7 bits (81), Expect = 0.004
 Identities = 29/233 (12%), Positives = 65/233 (27%), Gaps = 45/233 (19%)

Query: 102 YFNENPA-LFDMYHSGYQEQMSHWPELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK 160
           Y +   A ++ +Y    + + + +       ++  L+ H    V+ D  CG    +  + 
Sbjct: 21  YADGEAARVWQLYIGDTRSRTAEY----KAWLLGLLRQHGCHRVL-DVACGTGVDSIMLV 75

Query: 161 NKVFSFDLVSNDPSVIACDMSN--------------------------TPLNSSSVDVAV 194
            + FS   V     ++   +                             P       V  
Sbjct: 76  EEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVIC 135

Query: 195 FCLSLMGINFPN--------YLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKF---- 242
              S   +             L+    +++P G L+I      +  +TG A P K     
Sbjct: 136 LGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNYDYILSTGCAPPGKNIYYK 195

Query: 243 SKAVCDLGFAPVSKDFSNKMFIM-FYFKKKEKQNSKSKEIQWPELKPCLYKRR 294
           S    D+  + ++ +    M  + +  +        +       L    +   
Sbjct: 196 SDLTKDITTSVLTVNNKAHMVTLDYTVQVPGAGRDGAPGFSKFRLSYYPHCLA 248

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	294
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.87
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.85
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.83
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.8
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.77
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.75
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.74
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.74
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.74
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.72
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.71
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.71
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.69
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.67
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.67
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.67
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.66
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.64
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.64
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.64
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.62
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	99.62
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.61
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.61
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.6
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.6
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.58
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.58
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.56
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.52
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	99.51
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.49
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.44
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.43
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.43
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	99.43
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	99.4
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.38
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.37
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.36
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.32
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.31
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.29
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.27
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.26
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.25
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.25
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.24
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.23
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.22
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.21
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.15
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.01
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	99.01
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	98.94
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	98.94
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	98.89
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	98.8
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	98.77
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	98.73
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	98.67
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	98.6
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	98.58
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	98.58
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	98.57
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	98.56
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	98.52
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	98.47
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	98.46
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	98.4
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	98.39
d2h00a1	250	Methyltransferase 10 domain containing protein MET	98.38
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	98.38
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	98.38
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	98.37
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	98.14
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	98.09
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	98.04
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	98.01
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	97.91
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	97.9
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	97.89
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	97.89
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	97.88
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	97.87
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	97.86
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	97.82
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	97.8
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	97.74
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	97.7
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	97.68
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	97.6
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	97.5
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	97.47
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	97.46
d1m6ex_	359	Salicylic acid carboxyl methyltransferase (SAMT) {	97.45
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	97.38
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	96.86
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	96.83
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	96.57
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	95.48
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	93.92
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	93.65
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	93.63
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	93.25
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	92.23
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	92.21
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	91.71
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	91.56
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	90.98
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	90.75
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	90.26
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	90.05
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	90.02
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	89.57
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	88.43
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	87.65
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	86.71
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	86.28
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	85.87
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	82.77
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	82.36
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	81.19

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.87  E-value=2.1e-21  Score=163.69  Aligned_cols=147  Identities=18%  Similarity=0.217  Sum_probs=112.4

Q ss_pred             HHHhcChhhHHHHHHhHHhhhccCCCcHHHHHHHHhhccCCCCEEEEEcCcccHHHHHhccceEEEeccC--------CC
Q 022592          101 DYFNENPALFDMYHSGYQEQMSHWPELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVKNKVFSFDLVS--------ND  172 (294)
Q Consensus       101 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~~~v~gvD~s~--------~~  172 (294)
                      ++|+..++.||.+........        ...+..+....++.+|||||||+|.++..+ ..++|+|+|+        .+
T Consensus         4 ~~f~~~a~~Yd~w~~~~~~~~--------~~~~~~~~~~~~~~~vLDiGcG~G~~~~~~-~~~~giD~s~~~~~~a~~~~   74 (208)
T d1vlma_           4 HIFERFVNEYERWFLVHRFAY--------LSELQAVKCLLPEGRGVEIGVGTGRFAVPL-KIKIGVEPSERMAEIARKRG   74 (208)
T ss_dssp             HHHHHTHHHHHHHHHHTHHHH--------HHHHHHHHHHCCSSCEEEETCTTSTTHHHH-TCCEEEESCHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHhHHHH--------HHHHHHHHhhCCCCeEEEECCCCccccccc-ceEEEEeCChhhcccccccc
Confidence            467777777776543221111        112223333335668999999999998887 4678999998        57


Q ss_pred             CcEEEccCCCCCCCCCCccEEEEcccccCC-CHHHHHHHHHHhcCcCcEEEEEeecCC---------------CCCCCCC
Q 022592          173 PSVIACDMSNTPLNSSSVDVAVFCLSLMGI-NFPNYLQEAQRVLKPSGWLLIAEVKSR---------------FDPNTGG  236 (294)
Q Consensus       173 ~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~-~~~~~l~el~r~LkpgG~l~i~e~~~~---------------~~~~~~~  236 (294)
                      +.++++|++++|+++++||+|++..+|+|. ++..+++++.++|+|||.+++.++...               +......
T Consensus        75 ~~~~~~d~~~l~~~~~~fD~I~~~~~l~h~~d~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (208)
T d1vlma_          75 VFVLKGTAENLPLKDESFDFALMVTTICFVDDPERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARF  154 (208)
T ss_dssp             CEEEECBTTBCCSCTTCEEEEEEESCGGGSSCHHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCC
T ss_pred             cccccccccccccccccccccccccccccccccccchhhhhhcCCCCceEEEEecCCcchhHHhhhhccccccccccccC
Confidence            889999999999999999999999999995 899999999999999999999875432               1122233


Q ss_pred             CCHHHHHHHHHHCCCeEEEE
Q 022592          237 ADPNKFSKAVCDLGFAPVSK  256 (294)
Q Consensus       237 ~~~~~~~~~l~~~Gf~~~~~  256 (294)
                      ++.+++.++|+++||+++.+
T Consensus       155 ~s~~~l~~~l~~~Gf~~i~v  174 (208)
T d1vlma_         155 FSTEELMDLMRKAGFEEFKV  174 (208)
T ss_dssp             CCHHHHHHHHHHTTCEEEEE
T ss_pred             CCHHHHHHHHHHcCCeEEEE
Confidence            78999999999999988763

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.85  E-value=3.5e-21  Score=164.56  Aligned_cols=128  Identities=18%  Similarity=0.265  Sum_probs=106.1

Q ss_pred             HHHHHHHhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccC---------------CCCcEEEccCCCCCCCCCCc
Q 022592          129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSV  190 (294)
Q Consensus       129 ~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~---------------~~~~~~~~d~~~lp~~~~~f  190 (294)
                      +..+++.+... ++.+|||||||+|.++..++   .+|+|+|+|+               +++.++++|++++|+++++|
T Consensus         4 ~~~ll~~~~l~-~~~rVLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~~f   82 (231)
T d1vl5a_           4 LAKLMQIAALK-GNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERF   82 (231)
T ss_dssp             HHHHHHHHTCC-SCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCE
T ss_pred             HHHHHHhcCCC-CcCEEEEecccCcHHHHHHHHhCCEEEEEECCHHHHhhhhhccccccccccccccccccccccccccc
Confidence            45667776655 67899999999999998887   4899999996               46789999999999999999


Q ss_pred             cEEEEcccccCC-CHHHHHHHHHHhcCcCcEEEEEeecCC----------------CCCCCCCCCHHHHHHHHHHCCCeE
Q 022592          191 DVAVFCLSLMGI-NFPNYLQEAQRVLKPSGWLLIAEVKSR----------------FDPNTGGADPNKFSKAVCDLGFAP  253 (294)
Q Consensus       191 D~Vi~~~~l~~~-~~~~~l~el~r~LkpgG~l~i~e~~~~----------------~~~~~~~~~~~~~~~~l~~~Gf~~  253 (294)
                      |+|++..+++|. ++..++++++++|+|||++++.++...                .......++..++..+|+++||++
T Consensus        83 D~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~  162 (231)
T d1vl5a_          83 HIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFEL  162 (231)
T ss_dssp             EEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHHTCEE
T ss_pred             ccccccccccccCCHHHHHHHHHHhcCCCcEEEEEeCCCCCCHHHHHHHHHHHhhcccCcccCCCHHHHHHHHHHCCCEE
Confidence            999999999996 999999999999999999999864321                112233468899999999999998


Q ss_pred             EEEe
Q 022592          254 VSKD  257 (294)
Q Consensus       254 ~~~~  257 (294)
                      ++..
T Consensus       163 ~~~~  166 (231)
T d1vl5a_         163 EELH  166 (231)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7654

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.83  E-value=3.2e-20  Score=159.43  Aligned_cols=127  Identities=13%  Similarity=0.190  Sum_probs=105.3

Q ss_pred             HHHHHHhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccC---------------CCCcEEEccCCCCCCCCCCcc
Q 022592          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVD  191 (294)
Q Consensus       130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~---------------~~~~~~~~d~~~lp~~~~~fD  191 (294)
                      +.+++.+.-. ++.+|||||||+|.++..++   ..|+|+|+|+               .++.++++|++++|+++++||
T Consensus         6 ~~l~~~~~~~-~~~rILDiGcGtG~~~~~la~~~~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD   84 (234)
T d1xxla_           6 GLMIKTAECR-AEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFD   84 (234)
T ss_dssp             HHHHHHHTCC-TTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEE
T ss_pred             HHHHHHhCCC-CCCEEEEeCCcCcHHHHHHHHhCCeEEEEeCChhhhhhhhhhhcccccccccccccccccccccccccc
Confidence            3455555544 88899999999999999997   4899999996               468899999999999999999


Q ss_pred             EEEEcccccCC-CHHHHHHHHHHhcCcCcEEEEEeecCCC----------------CCCCCCCCHHHHHHHHHHCCCeEE
Q 022592          192 VAVFCLSLMGI-NFPNYLQEAQRVLKPSGWLLIAEVKSRF----------------DPNTGGADPNKFSKAVCDLGFAPV  254 (294)
Q Consensus       192 ~Vi~~~~l~~~-~~~~~l~el~r~LkpgG~l~i~e~~~~~----------------~~~~~~~~~~~~~~~l~~~Gf~~~  254 (294)
                      +|+|..+++|. ++..+++++.++|||||.++++++....                ......++..++..+++++||.+.
T Consensus        85 ~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~~  164 (234)
T d1xxla_          85 IITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNRLRDPSHVRESSLSEWQAMFSANQLAYQ  164 (234)
T ss_dssp             EEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHTTEEEE
T ss_pred             eeeeeceeecccCHHHHHHHHHHeeCCCcEEEEEEcCCCCCHHHHHHHHHHHhhCCCcccccCCHHHHHHHHHHCCCcee
Confidence            99999999995 8999999999999999999998654311                112233678899999999999887


Q ss_pred             EEe
Q 022592          255 SKD  257 (294)
Q Consensus       255 ~~~  257 (294)
                      ...
T Consensus       165 ~~~  167 (234)
T d1xxla_         165 DIQ  167 (234)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            643

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.80  E-value=2.5e-19  Score=158.14  Aligned_cols=118  Identities=15%  Similarity=0.152  Sum_probs=99.1

Q ss_pred             CCCCEEEEEcCcccHHHHHhc----cceEEEeccC----------------CCCcEEEccCCCCCCCCCCccEEEEcccc
Q 022592          140 SPSLVIADFGCGDARLAKSVK----NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSVDVAVFCLSL  199 (294)
Q Consensus       140 ~~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~----------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l  199 (294)
                      +++.+|||||||+|.++..++    ..|+|+|+|+                .++.++++|+.++|+++++||+|++..++
T Consensus        66 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l  145 (282)
T d2o57a1          66 QRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDAF  145 (282)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEESCG
T ss_pred             CCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhcccccccccccccccccccccccccccccchhhccchh
Confidence            577899999999999988886    3799999997                36789999999999999999999999999


Q ss_pred             cCC-CHHHHHHHHHHhcCcCcEEEEEeecCCCCCC-------------CCCCCHHHHHHHHHHCCCeEEEEe
Q 022592          200 MGI-NFPNYLQEAQRVLKPSGWLLIAEVKSRFDPN-------------TGGADPNKFSKAVCDLGFAPVSKD  257 (294)
Q Consensus       200 ~~~-~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~-------------~~~~~~~~~~~~l~~~Gf~~~~~~  257 (294)
                      +|. ++..++.++.++|||||+|++.++.......             ....+...+..+++++||..+...
T Consensus       146 ~h~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~i~~~  217 (282)
T d2o57a1         146 LHSPDKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYRSLAKECGLVTLRTF  217 (282)
T ss_dssp             GGCSCHHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHHTCSSCCCHHHHHHHHHHTTEEEEEEE
T ss_pred             hhccCHHHHHHHHHHhcCCCcEEEEEEeecCCCCchhHHHHHHHHhccCCCCCHHHHHHHHHHcCCceEEEE
Confidence            995 8999999999999999999998754321110             112478899999999999887643

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=2.3e-19  Score=152.93  Aligned_cols=119  Identities=16%  Similarity=0.296  Sum_probs=96.5

Q ss_pred             CCCCEEEEEcCcccHHHHHhc----cceEEEeccC---------------CCCcEEEccCCCCCCCCCCccEEEEccccc
Q 022592          140 SPSLVIADFGCGDARLAKSVK----NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLM  200 (294)
Q Consensus       140 ~~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~---------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~  200 (294)
                      .+..+|||||||+|.++..++    .+|+|+|+|+               .++.++++|+.++++++++||+|++..+++
T Consensus        59 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~l~  138 (222)
T d2ex4a1          59 TGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIG  138 (222)
T ss_dssp             CCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred             CCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhccccccccccccccccccccccccccccccccccccccccc
Confidence            355789999999999998765    3799999998               245789999999999899999999999999


Q ss_pred             CCC---HHHHHHHHHHhcCcCcEEEEEeecCCCCC----CC--CCCCHHHHHHHHHHCCCeEEEEec
Q 022592          201 GIN---FPNYLQEAQRVLKPSGWLLIAEVKSRFDP----NT--GGADPNKFSKAVCDLGFAPVSKDF  258 (294)
Q Consensus       201 ~~~---~~~~l~el~r~LkpgG~l~i~e~~~~~~~----~~--~~~~~~~~~~~l~~~Gf~~~~~~~  258 (294)
                      |..   ...++.++.++|+|||.+++.+.......    ..  ..++.+.+.++++++||+++....
T Consensus       139 h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aGf~ii~~~~  205 (222)
T d2ex4a1         139 HLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEER  205 (222)
T ss_dssp             GSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEEE
T ss_pred             cchhhhhhhHHHHHHHhcCCcceEEEEEcccccccccccCCceeeCCHHHHHHHHHHcCCEEEEEEE
Confidence            963   34799999999999999999875432211    11  114789999999999999987543

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.75  E-value=1.7e-18  Score=149.65  Aligned_cols=126  Identities=22%  Similarity=0.216  Sum_probs=100.9

Q ss_pred             HHHHHHHhhccCCCCEEEEEcCcccHHHHHhc----cceEEEeccC----------------CCCcEEEccCCCCCCCCC
Q 022592          129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS----------------NDPSVIACDMSNTPLNSS  188 (294)
Q Consensus       129 ~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~----------------~~~~~~~~d~~~lp~~~~  188 (294)
                      +..+.+.+... |+.+|||||||+|.++..++    ..|+|+|+|+                +++.++.+|+.++ ++++
T Consensus        22 ~~~l~~~~~l~-pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~-~~~~   99 (245)
T d1nkva_          22 YATLGRVLRMK-PGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY-VANE   99 (245)
T ss_dssp             HHHHHHHTCCC-TTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTC-CCSS
T ss_pred             HHHHHHHcCCC-CCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhc-cccC
Confidence            34455555444 78899999999999888776    3899999997                3578999999987 4678


Q ss_pred             CccEEEEcccccCC-CHHHHHHHHHHhcCcCcEEEEEeecCCCCC-------------CCCCCCHHHHHHHHHHCCCeEE
Q 022592          189 SVDVAVFCLSLMGI-NFPNYLQEAQRVLKPSGWLLIAEVKSRFDP-------------NTGGADPNKFSKAVCDLGFAPV  254 (294)
Q Consensus       189 ~fD~Vi~~~~l~~~-~~~~~l~el~r~LkpgG~l~i~e~~~~~~~-------------~~~~~~~~~~~~~l~~~Gf~~~  254 (294)
                      +||+|++..+++|. ++..+++++.++|||||.+++.+......+             .....+..++..+++++||+++
T Consensus       100 ~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aG~~~v  179 (245)
T d1nkva_         100 KCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVGAFDDLGYDVV  179 (245)
T ss_dssp             CEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSCCHHHHHHHHHTTTBCCC
T ss_pred             ceeEEEEEehhhccCCHHHHHHHHHHHcCcCcEEEEEeccccCCCChHHHHHHhccCCCcccCCHHHHHHHHHHcCCEEE
Confidence            99999999999996 899999999999999999999864321111             1112578899999999999887


Q ss_pred             EE
Q 022592          255 SK  256 (294)
Q Consensus       255 ~~  256 (294)
                      ..
T Consensus       180 ~~  181 (245)
T d1nkva_         180 EM  181 (245)
T ss_dssp             EE
T ss_pred             EE
Confidence            64

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.74  E-value=5.4e-18  Score=144.54  Aligned_cols=129  Identities=16%  Similarity=0.192  Sum_probs=100.3

Q ss_pred             CCCCEEEEEcCcccHHHHHhc-------cceEEEeccC----------------CCCcEEEccCCCCCCCCCCccEEEEc
Q 022592          140 SPSLVIADFGCGDARLAKSVK-------NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSVDVAVFC  196 (294)
Q Consensus       140 ~~~~~VLDiGcG~G~~~~~l~-------~~v~gvD~s~----------------~~~~~~~~d~~~lp~~~~~fD~Vi~~  196 (294)
                      +++.+|||||||+|..+..++       .+|+|+|+|+                .++.+..+|+.+.+  .+.+|+|+++
T Consensus        38 ~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~--~~~~d~i~~~  115 (225)
T d1im8a_          38 TADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE--IKNASMVILN  115 (225)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCC--CCSEEEEEEE
T ss_pred             CCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccc--cccceeeEEe
Confidence            467899999999999887665       2799999998                23455666666555  4678999999


Q ss_pred             ccccCC---CHHHHHHHHHHhcCcCcEEEEEeecCCCC---------------------CC------------CCCCCHH
Q 022592          197 LSLMGI---NFPNYLQEAQRVLKPSGWLLIAEVKSRFD---------------------PN------------TGGADPN  240 (294)
Q Consensus       197 ~~l~~~---~~~~~l~el~r~LkpgG~l~i~e~~~~~~---------------------~~------------~~~~~~~  240 (294)
                      .+++|.   ++..++++++++|+|||.+++.++.....                     +.            ...++.+
T Consensus       116 ~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  195 (225)
T d1im8a_         116 FTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEVSQKRTALENVMRTDSIE  195 (225)
T ss_dssp             SCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEECCCSSHHHHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCCCHH
T ss_pred             eeccccChhhHHHHHHHHHHhCCCCceeecccccccccchhhhHHHHHHHHHHHHcCCCHHHHHHHHHHhhcccCCCCHH
Confidence            999985   67799999999999999999987542110                     00            1125888


Q ss_pred             HHHHHHHHCCCeEEEEeccCCeEEEEEEEE
Q 022592          241 KFSKAVCDLGFAPVSKDFSNKMFIMFYFKK  270 (294)
Q Consensus       241 ~~~~~l~~~Gf~~~~~~~~~~~f~~i~~~k  270 (294)
                      ++..+|+++||+.+++.+....|..++++|
T Consensus       196 ~~~~~L~~aGF~~v~~~~~~~~f~~~~a~k  225 (225)
T d1im8a_         196 THKVRLKNVGFSQVELWFQCFNFGSMIAVK  225 (225)
T ss_dssp             HHHHHHHHHTCSEEEEEEEETTEEEEEEEC
T ss_pred             HHHHHHHHcCCCceEEeeeeCceEEEEEEC
Confidence            999999999999998777777787777765

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.74  E-value=1.6e-18  Score=151.13  Aligned_cols=159  Identities=19%  Similarity=0.265  Sum_probs=110.9

Q ss_pred             HHHHHHhcChhhHHHHHHhHHhhhccCCCcHHHHHHHHhhccCCCCEEEEEcCcccHHHHHhc----cceEEEeccC---
Q 022592           98 EALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS---  170 (294)
Q Consensus        98 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~---  170 (294)
                      ...+||...+...+.+..+|...... .......+++.+... ...+|||+|||+|.++..++    ..|+++|+|+   
T Consensus        52 ~~~~yW~~~~~t~~~mlgg~~~~~~~-d~~~s~~fl~~l~~~-~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l  129 (254)
T d1xtpa_          52 KALEYWRTVPATVSGVLGGMDHVHDV-DIEGSRNFIASLPGH-GTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHML  129 (254)
T ss_dssp             HHHHHHHTSCSSHHHHTTTCGGGHHH-HHHHHHHHHHTSTTC-CCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHH
T ss_pred             chhhhhhcCchhcccccCCccccchh-hHHHHHHHHhhCCCC-CCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHH
Confidence            34445555444444444444221100 001123345555443 45699999999999998775    3799999998   


Q ss_pred             ----------CCCcEEEccCCCCCCCCCCccEEEEcccccCC-C--HHHHHHHHHHhcCcCcEEEEEeecCCCC-----C
Q 022592          171 ----------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGI-N--FPNYLQEAQRVLKPSGWLLIAEVKSRFD-----P  232 (294)
Q Consensus       171 ----------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~-~--~~~~l~el~r~LkpgG~l~i~e~~~~~~-----~  232 (294)
                                ..+.+.++|+.++++++++||+|++..+++|. +  ...+++++.++|+|||.|+|.+......     .
T Consensus       130 ~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~d~  209 (254)
T d1xtpa_         130 EEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDK  209 (254)
T ss_dssp             HHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEET
T ss_pred             HhhhccccccccceeEEccccccccCCCccceEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEecCCCCCcceecc
Confidence                      24678999999999989999999999999996 3  3488999999999999999987432211     1


Q ss_pred             CC--CCCCHHHHHHHHHHCCCeEEEEec
Q 022592          233 NT--GGADPNKFSKAVCDLGFAPVSKDF  258 (294)
Q Consensus       233 ~~--~~~~~~~~~~~l~~~Gf~~~~~~~  258 (294)
                      ..  ...+.+.+.++++++||+++....
T Consensus       210 ~d~~~~rs~~~~~~l~~~aGf~ii~~~~  237 (254)
T d1xtpa_         210 EDSSLTRSDIHYKRLFNESGVRVVKEAF  237 (254)
T ss_dssp             TTTEEEBCHHHHHHHHHHHTCCEEEEEE
T ss_pred             cCCceeCCHHHHHHHHHHcCCEEEEEEe
Confidence            11  125788999999999999987543

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.74  E-value=1.4e-17  Score=142.16  Aligned_cols=123  Identities=11%  Similarity=0.129  Sum_probs=98.2

Q ss_pred             HHhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccC-----------CCCcEEEccCCCCCCCCCCccEEEEcccc
Q 022592          134 KWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS-----------NDPSVIACDMSNTPLNSSSVDVAVFCLSL  199 (294)
Q Consensus       134 ~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~-----------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l  199 (294)
                      +.+.....+.+|||||||+|.++..++   ..|+|+|+|+           .++.++.+|+.++++ +++||+|++..+|
T Consensus        13 ~~~~~~~~~~~VLDiGcG~G~~~~~l~~~g~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~~~~~~-~~~fD~I~~~~vl   91 (225)
T d2p7ia1          13 RAFTPFFRPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLKDGITYIHSRFEDAQL-PRRYDNIVLTHVL   91 (225)
T ss_dssp             HHHGGGCCSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCC-SSCEEEEEEESCG
T ss_pred             HHhhhhCCCCcEEEEeCCCcHHHHHHHHcCCeEEEEeCcHHHhhhhhccccccccccccccccccc-cccccccccccee
Confidence            333333355689999999999999997   4899999997           467889999988876 5789999999999


Q ss_pred             cCC-CHHHHHHHHH-HhcCcCcEEEEEeecCC------------------------CCCCCCCCCHHHHHHHHHHCCCeE
Q 022592          200 MGI-NFPNYLQEAQ-RVLKPSGWLLIAEVKSR------------------------FDPNTGGADPNKFSKAVCDLGFAP  253 (294)
Q Consensus       200 ~~~-~~~~~l~el~-r~LkpgG~l~i~e~~~~------------------------~~~~~~~~~~~~~~~~l~~~Gf~~  253 (294)
                      +|. ++..++.++. ++|+|||.+++...+..                        ...+...++.+++..+++++||++
T Consensus        92 eh~~d~~~~l~~i~~~~Lk~gG~l~i~~pn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~l~~~Gf~i  171 (225)
T d2p7ia1          92 EHIDDPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQV  171 (225)
T ss_dssp             GGCSSHHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCEE
T ss_pred             EecCCHHHHHHHHHHHhcCCCceEEEEeCCcccHHHHHHHHhhhhhhhhhcCccccceeeeeccCHHHHHHHHHHCCCEE
Confidence            995 8999999998 89999999999743211                        011223478999999999999998


Q ss_pred             EEEe
Q 022592          254 VSKD  257 (294)
Q Consensus       254 ~~~~  257 (294)
                      +...
T Consensus       172 ~~~~  175 (225)
T d2p7ia1         172 TYRS  175 (225)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8743

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.72  E-value=2.1e-17  Score=142.48  Aligned_cols=121  Identities=15%  Similarity=0.209  Sum_probs=85.6

Q ss_pred             HHHhcChhhHHHHHHhHHhhhccCCCcHHHHHHHHhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccC-------
Q 022592          101 DYFNENPALFDMYHSGYQEQMSHWPELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS-------  170 (294)
Q Consensus       101 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~-------  170 (294)
                      ++|+..++.||............ ....+..++..+... +..+|||||||+|.++..++   ..|+|+|+|+       
T Consensus         3 ~~~~~~a~~Yd~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~iLDiGcGtG~~~~~l~~~~~~v~gvD~s~~mi~~a~   80 (251)
T d1wzna1           3 ELYTLLAEYYDTIYRRRIERVKA-EIDFVEEIFKEDAKR-EVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVAR   80 (251)
T ss_dssp             GGGTTTGGGHHHHTHHHHHTHHH-HHHHHHHHHHHTCSS-CCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             chhHhhHHHHHHHHHhhhhhHHH-HHHHHHHHHHHhcCC-CCCEEEEeCCCCCccchhhcccceEEEEEeeccccccccc
Confidence            45666777777743321111000 001122233333333 45689999999999998886   4799999998       


Q ss_pred             -------CCCcEEEccCCCCCCCCCCccEEEEc-ccccCC---CHHHHHHHHHHhcCcCcEEEEE
Q 022592          171 -------NDPSVIACDMSNTPLNSSSVDVAVFC-LSLMGI---NFPNYLQEAQRVLKPSGWLLIA  224 (294)
Q Consensus       171 -------~~~~~~~~d~~~lp~~~~~fD~Vi~~-~~l~~~---~~~~~l~el~r~LkpgG~l~i~  224 (294)
                             .++.+.++|+++++++ ++||+|++. .+++|.   ++..+|++++++|+|||.+++.
T Consensus        81 ~~~~~~~~~i~~~~~d~~~l~~~-~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~  144 (251)
T d1wzna1          81 RKAKERNLKIEFLQGDVLEIAFK-NEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITD  144 (251)
T ss_dssp             HHHHHTTCCCEEEESCGGGCCCC-SCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cccccccccchheehhhhhcccc-cccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEE
Confidence                   2688999999999987 589999986 566775   4568999999999999999873

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.71  E-value=1.2e-17  Score=143.00  Aligned_cols=86  Identities=20%  Similarity=0.234  Sum_probs=75.2

Q ss_pred             CCCEEEEEcCcccHHHHHhc---cceEEEeccC---------CCCcEEEccCCCCCCCCCCccEEEEc-ccccC-CCHHH
Q 022592          141 PSLVIADFGCGDARLAKSVK---NKVFSFDLVS---------NDPSVIACDMSNTPLNSSSVDVAVFC-LSLMG-INFPN  206 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~---------~~~~~~~~d~~~lp~~~~~fD~Vi~~-~~l~~-~~~~~  206 (294)
                      ++.+|||||||+|.++..++   .+|+|+|+|+         ....++.+|++++|+++++||+|++. .+++| .|+..
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~l~~~~~~fD~ii~~~~~~~~~~d~~~  121 (246)
T d2avna1          42 NPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVENKDK  121 (246)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSCHHH
T ss_pred             CCCEEEEECCCCchhcccccccceEEEEeecccccccccccccccccccccccccccccccccceeeecchhhhhhhHHH
Confidence            55799999999999999997   3899999998         23457889999999999999999985 57888 49999


Q ss_pred             HHHHHHHhcCcCcEEEEEee
Q 022592          207 YLQEAQRVLKPSGWLLIAEV  226 (294)
Q Consensus       207 ~l~el~r~LkpgG~l~i~e~  226 (294)
                      +++++.++|||||.+++...
T Consensus       122 ~l~~i~r~Lk~gG~~ii~~~  141 (246)
T d2avna1         122 AFSEIRRVLVPDGLLIATVD  141 (246)
T ss_dssp             HHHHHHHHEEEEEEEEEEEE
T ss_pred             HHHHHHhhcCcCcEEEEEEC
Confidence            99999999999999998753

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.71  E-value=7.9e-18  Score=142.37  Aligned_cols=87  Identities=21%  Similarity=0.360  Sum_probs=77.4

Q ss_pred             CCCCEEEEEcCcccHHHHHhc---cceEEEeccC--------------CCCcEEEccCCCCCCCCCCccEEEEcccccCC
Q 022592          140 SPSLVIADFGCGDARLAKSVK---NKVFSFDLVS--------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGI  202 (294)
Q Consensus       140 ~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~--------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~  202 (294)
                      ++..+|||||||+|.++..++   ..|+|+|+|+              ..+.++.+|+.++|+++++||+|++..+++|.
T Consensus        36 ~~~~~ILDiGcG~G~~~~~la~~~~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~~~  115 (226)
T d1ve3a1          36 KKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHF  115 (226)
T ss_dssp             CSCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGGC
T ss_pred             CCCCEEEEECCCcchhhhhHhhhhcccccccccccchhhhhhhhccccccccccccccccccccCcCceEEEEecchhhC
Confidence            366799999999999999887   4899999997              35678899999999999999999999999995


Q ss_pred             ---CHHHHHHHHHHhcCcCcEEEEEee
Q 022592          203 ---NFPNYLQEAQRVLKPSGWLLIAEV  226 (294)
Q Consensus       203 ---~~~~~l~el~r~LkpgG~l~i~e~  226 (294)
                         ++..+++++.++|||||.+++...
T Consensus       116 ~~~d~~~~l~~i~~~LkpgG~lii~~~  142 (226)
T d1ve3a1         116 EPLELNQVFKEVRRVLKPSGKFIMYFT  142 (226)
T ss_dssp             CHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ChhHHHHHHHHHHHHcCcCcEEEEEEc
Confidence               566899999999999999988754

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.69  E-value=1.6e-16  Score=136.95  Aligned_cols=94  Identities=20%  Similarity=0.350  Sum_probs=75.1

Q ss_pred             HHHHHHhhcc-CCCCEEEEEcCcccHHHHHhcc---ceEEEeccC--------------CCCcEEEccCCCCCCCCCCcc
Q 022592          130 NIIVKWLKDH-SPSLVIADFGCGDARLAKSVKN---KVFSFDLVS--------------NDPSVIACDMSNTPLNSSSVD  191 (294)
Q Consensus       130 ~~~~~~l~~~-~~~~~VLDiGcG~G~~~~~l~~---~v~gvD~s~--------------~~~~~~~~d~~~lp~~~~~fD  191 (294)
                      ..++..+... +++.+|||||||+|.++..++.   .|+|+|+|+              .++.++++|+.++++ +++||
T Consensus        25 ~~~~~~~~~~~~~~~~vLDiGCG~G~~~~~l~~~g~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~-~~~fD  103 (246)
T d1y8ca_          25 DFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNI-NRKFD  103 (246)
T ss_dssp             HHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCC-SCCEE
T ss_pred             HHHHHHHHHhCCCCCeEEEEeCcCCHHHHHHHHhCCccEeeccchhhhhhccccccccCccceeeccchhhhcc-ccccc
Confidence            3344555443 3456999999999999999973   799999997              268899999999886 46899


Q ss_pred             EEEEc-ccccCC----CHHHHHHHHHHhcCcCcEEEEE
Q 022592          192 VAVFC-LSLMGI----NFPNYLQEAQRVLKPSGWLLIA  224 (294)
Q Consensus       192 ~Vi~~-~~l~~~----~~~~~l~el~r~LkpgG~l~i~  224 (294)
                      +|+|. .+++|.    ++..++++++++|+|||.|++.
T Consensus       104 ~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  141 (246)
T d1y8ca_         104 LITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFD  141 (246)
T ss_dssp             EEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             ccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEEE
Confidence            99985 566663    5668999999999999999873

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.67  E-value=1.4e-16  Score=140.49  Aligned_cols=96  Identities=22%  Similarity=0.303  Sum_probs=79.3

Q ss_pred             HHHHHHhhccCCCCEEEEEcCcccHHHHHhc------cceEEEeccC--------------CCCcEEEccCCCCCCCCCC
Q 022592          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS--------------NDPSVIACDMSNTPLNSSS  189 (294)
Q Consensus       130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~--------------~~~~~~~~d~~~lp~~~~~  189 (294)
                      ..++..+.....+.+|||||||+|.++..++      ..|+|+|+|+              .++.+..+|+..++++ ++
T Consensus        16 ~~l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~~~-~~   94 (281)
T d2gh1a1          16 SFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELN-DK   94 (281)
T ss_dssp             HHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCS-SC
T ss_pred             HHHHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccccccccccccccccccccc-CC
Confidence            3344444333455799999999999988876      2699999997              2567899999999875 57


Q ss_pred             ccEEEEcccccCC-CHHHHHHHHHHhcCcCcEEEEEee
Q 022592          190 VDVAVFCLSLMGI-NFPNYLQEAQRVLKPSGWLLIAEV  226 (294)
Q Consensus       190 fD~Vi~~~~l~~~-~~~~~l~el~r~LkpgG~l~i~e~  226 (294)
                      ||+|++..+++|. ++..+++++.++|||||.+++.+.
T Consensus        95 fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~lii~~~  132 (281)
T d2gh1a1          95 YDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEP  132 (281)
T ss_dssp             EEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             ceEEEEehhhhcCCCHHHHHHHHHHHcCcCcEEEEEEC
Confidence            9999999999995 899999999999999999999873

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.67  E-value=4.1e-16  Score=135.32  Aligned_cols=150  Identities=13%  Similarity=0.193  Sum_probs=106.7

Q ss_pred             HHHhcChhhHHHHHHhHHhhhccCCCcHHHHHHHHhhccCCCCEEEEEcCcccHHHHHhc-----cceEEEeccC-----
Q 022592          101 DYFNENPALFDMYHSGYQEQMSHWPELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS-----  170 (294)
Q Consensus       101 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~-----  170 (294)
                      +++..+++.-..    |...+..+.....+.++..+... ...+|||||||+|.++..++     ..++++|+++     
T Consensus        45 ~~~~~~~~~~~~----f~~~m~~~~~~~~~~~~~~~d~~-~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~~~~~~~a  119 (253)
T d1tw3a2          45 EDLAGRPDLRAS----FDSLLACDQDVAFDAPAAAYDWT-NVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTA  119 (253)
T ss_dssp             HHHHTCHHHHHH----HHHHHTTTTTTTTHHHHHHSCCT-TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHH
T ss_pred             HHHhhCHHHHHH----HHHHHHHhHHHHHHHHHhhcCCc-cCCEEEEeCCCCCHHHHHHHHhcceeEEEEccCHHHHHHH
Confidence            444444443333    33444444444556677766544 45699999999999998887     2688999864     


Q ss_pred             ----------CCCcEEEccCCCCCCCCCCccEEEEcccccCCCH---HHHHHHHHHhcCcCcEEEEEeecCCCCCC----
Q 022592          171 ----------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGINF---PNYLQEAQRVLKPSGWLLIAEVKSRFDPN----  233 (294)
Q Consensus       171 ----------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~~~---~~~l~el~r~LkpgG~l~i~e~~~~~~~~----  233 (294)
                                .++.++.+|+.+. .+ .+||+|++..+|||.+.   ..+|++++++|+|||.|+|.|........    
T Consensus       120 ~~~~~~~~~~~rv~~~~~D~~~~-~~-~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~~~~~~~~~~~  197 (253)
T d1tw3a2         120 RSYLKDEGLSDRVDVVEGDFFEP-LP-RKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQ  197 (253)
T ss_dssp             HHHHHHTTCTTTEEEEECCTTSC-CS-SCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHH
T ss_pred             HHHHHHhhcccchhhccccchhh-cc-cchhheeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEeccCCCCCcchhH
Confidence                      4678999998653 22 56999999999998633   47899999999999999998754311110    


Q ss_pred             -------------CCCCCHHHHHHHHHHCCCeEEEEe
Q 022592          234 -------------TGGADPNKFSKAVCDLGFAPVSKD  257 (294)
Q Consensus       234 -------------~~~~~~~~~~~~l~~~Gf~~~~~~  257 (294)
                                   ...++.+++..+++++||+++++.
T Consensus       198 ~~~~dl~~~~~~~g~~rt~~e~~~ll~~AGf~~~~v~  234 (253)
T d1tw3a2         198 FTELDLRMLVFLGGALRTREKWDGLAASAGLVVEEVR  234 (253)
T ss_dssp             HHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEEE
T ss_pred             HHHhhHHHHhhCCCcCCCHHHHHHHHHHCCCeEEEEE
Confidence                         112478999999999999988743

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.67  E-value=1.8e-17  Score=145.36  Aligned_cols=82  Identities=21%  Similarity=0.443  Sum_probs=72.4

Q ss_pred             CCCEEEEEcCcccHHHHHhc-----cceEEEeccC----------CCCcEEEccCCCCCCCCCCccEEEEcccccCCCHH
Q 022592          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS----------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGINFP  205 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~----------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~~~~  205 (294)
                      ++.+|||||||+|.++..++     ..++|+|+|+          .++.++++|+.++|+++++||+|++.++++|    
T Consensus        84 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~----  159 (268)
T d1p91a_          84 KATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPCK----  159 (268)
T ss_dssp             TCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCCCC----
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcccccccceeeehhhccCCCCCEEEEeecCCHHH----
Confidence            45699999999999988876     2789999998          5889999999999999999999999988776    


Q ss_pred             HHHHHHHHhcCcCcEEEEEeecC
Q 022592          206 NYLQEAQRVLKPSGWLLIAEVKS  228 (294)
Q Consensus       206 ~~l~el~r~LkpgG~l~i~e~~~  228 (294)
                        ++|+.|+|||||.|+++....
T Consensus       160 --~~e~~rvLkpgG~l~~~~p~~  180 (268)
T d1p91a_         160 --AEELARVVKPGGWVITATPGP  180 (268)
T ss_dssp             --HHHHHHHEEEEEEEEEEEECT
T ss_pred             --HHHHHHHhCCCcEEEEEeeCC
Confidence              678999999999999986543

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=2.5e-17  Score=142.45  Aligned_cols=117  Identities=16%  Similarity=0.154  Sum_probs=88.0

Q ss_pred             CCCEEEEEcCcccHHHHHhc----cceEEEeccCCCCc------------------------------------------
Q 022592          141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVSNDPS------------------------------------------  174 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~~~~~------------------------------------------  174 (294)
                      ++.+|||||||+|.++..++    ..|+|+|+|+..+.                                          
T Consensus        51 ~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (257)
T d2a14a1          51 QGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAA  130 (257)
T ss_dssp             CEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHhhh
Confidence            55689999999999876665    37999999982211                                          


Q ss_pred             ---EEE----ccCCCCCCCCCCccEEEEcccccCC-----CHHHHHHHHHHhcCcCcEEEEEeecCCCC-------CCCC
Q 022592          175 ---VIA----CDMSNTPLNSSSVDVAVFCLSLMGI-----NFPNYLQEAQRVLKPSGWLLIAEVKSRFD-------PNTG  235 (294)
Q Consensus       175 ---~~~----~d~~~lp~~~~~fD~Vi~~~~l~~~-----~~~~~l~el~r~LkpgG~l~i~e~~~~~~-------~~~~  235 (294)
                         ...    .+....+++.++||+|++.++|+|.     ++..+++++.++|||||.+++.++.....       ....
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~~~~~~~~~~  210 (257)
T d2a14a1         131 VKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFSCV  210 (257)
T ss_dssp             EEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEECC
T ss_pred             hhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccccceecccccccc
Confidence               111    1222246678899999999999983     45689999999999999999987654211       1123


Q ss_pred             CCCHHHHHHHHHHCCCeEEEEe
Q 022592          236 GADPNKFSKAVCDLGFAPVSKD  257 (294)
Q Consensus       236 ~~~~~~~~~~l~~~Gf~~~~~~  257 (294)
                      .++.+++.++|+++||+++++.
T Consensus       211 ~~~~~~~~~~l~~aGf~v~~~~  232 (257)
T d2a14a1         211 ALEKGEVEQAVLDAGFDIEQLL  232 (257)
T ss_dssp             CCCHHHHHHHHHHTTEEEEEEE
T ss_pred             CCCHHHHHHHHHHCCCEEEEEE
Confidence            4789999999999999988853

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.64  E-value=4.9e-16  Score=137.55  Aligned_cols=127  Identities=13%  Similarity=0.164  Sum_probs=97.0

Q ss_pred             HHHHHHhhccCCCCEEEEEcCcccHHHHHhc----cceEEEeccCC----------------CCcEEEccCCCCCCCCCC
Q 022592          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVSN----------------DPSVIACDMSNTPLNSSS  189 (294)
Q Consensus       130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~~----------------~~~~~~~d~~~lp~~~~~  189 (294)
                      +.+++.+.. .++.+|||||||.|.++..++    ..|+|+++|+.                .+.+...|   .++.+++
T Consensus        51 ~~~~~~l~l-~~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d---~~~~~~~  126 (291)
T d1kpia_          51 KLALDKLNL-EPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQG---WEEFDEP  126 (291)
T ss_dssp             HHHHHTTCC-CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECC---GGGCCCC
T ss_pred             HHHHHhcCC-CCCCEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHHHHHHhhccchhhhhhhhc---ccccccc
Confidence            445555544 488999999999999998887    48999999982                33444444   4556789


Q ss_pred             ccEEEEcccccCC-C---------HHHHHHHHHHhcCcCcEEEEEeecCC--------------------------CCCC
Q 022592          190 VDVAVFCLSLMGI-N---------FPNYLQEAQRVLKPSGWLLIAEVKSR--------------------------FDPN  233 (294)
Q Consensus       190 fD~Vi~~~~l~~~-~---------~~~~l~el~r~LkpgG~l~i~e~~~~--------------------------~~~~  233 (294)
                      ||.|++..+++|+ +         ...+++++.++|+|||.+++..+...                          +.|.
T Consensus       127 fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~~~~~~~~~~~~~~p~~~~~~~~fi~kyiFpg  206 (291)
T d1kpia_         127 VDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPG  206 (291)
T ss_dssp             CSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCTT
T ss_pred             cceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEeccCcchhhhccCCCchhhcccchHHHHHhcCC
Confidence            9999999999995 3         57999999999999999999765310                          1222


Q ss_pred             CCCCCHHHHHHHHHHCCCeEEEEeccC
Q 022592          234 TGGADPNKFSKAVCDLGFAPVSKDFSN  260 (294)
Q Consensus       234 ~~~~~~~~~~~~l~~~Gf~~~~~~~~~  260 (294)
                      ..-.+..++..+++++||+++......
T Consensus       207 g~lps~~~~~~~~e~~gl~v~~~~~~~  233 (291)
T d1kpia_         207 GRLPRISQVDYYSSNAGWKVERYHRIG  233 (291)
T ss_dssp             CCCCCHHHHHHHHHHHTCEEEEEEECG
T ss_pred             CCCCCHHHHHhhhcccccccceeeecc
Confidence            233588999999999999998865443

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=6.6e-16  Score=131.89  Aligned_cols=145  Identities=12%  Similarity=0.096  Sum_probs=102.9

Q ss_pred             HHHHHHhHHhhhccCCCc----HHHHHHHHhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccC------------
Q 022592          110 FDMYHSGYQEQMSHWPEL----PVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS------------  170 (294)
Q Consensus       110 ~d~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~------------  170 (294)
                      .+.+.+.|......|...    .+...+..+....++.+|||+|||+|..+..|+   ..|+|+|+|+            
T Consensus        10 ~e~W~~~~~~~~~~w~~~~~~~~l~~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~G~~V~gvD~S~~ai~~a~~~~~~   89 (229)
T d2bzga1          10 LEEWQDKWVNGKTAFHQEQGHQLLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADRGHSVVGVEISELGIQEFFTEQNL   89 (229)
T ss_dssp             HHHHHHHHHHTCCTTCCTTCCHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTC
T ss_pred             HHHHHHHHccCCCCCccCCCCHHHHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhhc
Confidence            344444555555666432    222223222223467799999999999999998   3899999997            


Q ss_pred             --------------------CCCcEEEccCCCCC-CCCCCccEEEEcccccCC---CHHHHHHHHHHhcCcCcEEEEEee
Q 022592          171 --------------------NDPSVIACDMSNTP-LNSSSVDVAVFCLSLMGI---NFPNYLQEAQRVLKPSGWLLIAEV  226 (294)
Q Consensus       171 --------------------~~~~~~~~d~~~lp-~~~~~fD~Vi~~~~l~~~---~~~~~l~el~r~LkpgG~l~i~e~  226 (294)
                                          .++.++++|+..++ ...+.||+|+...+++|.   +...++.++.++|+|||.+++..+
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~  169 (229)
T d2bzga1          90 SYSEEPITEIPGTKVFKSSSGNISLYCCSIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVL  169 (229)
T ss_dssp             CEEEEECTTSTTCEEEEETTSSEEEEESCGGGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             cccccchhcccccceeeecCCcEEEEEcchhhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEc
Confidence                                14567888988764 557889999999999985   567899999999999999888765


Q ss_pred             cCCCCCCCC---CCCHHHHHHHHHHCCCeEEE
Q 022592          227 KSRFDPNTG---GADPNKFSKAVCDLGFAPVS  255 (294)
Q Consensus       227 ~~~~~~~~~---~~~~~~~~~~l~~~Gf~~~~  255 (294)
                      ........+   .++.+++..++.. +|.+..
T Consensus       170 ~~~~~~~~gpp~~~~~~el~~lf~~-~~~i~~  200 (229)
T d2bzga1         170 SYDPTKHPGPPFYVPHAEIERLFGK-ICNIRC  200 (229)
T ss_dssp             ECCTTTCCCSSCCCCHHHHHHHHTT-TEEEEE
T ss_pred             ccCCCCCCCCCCCCCHHHHHHHhcC-CCEEEE
Confidence            543222211   2588899998865 676544

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.64  E-value=9.8e-16  Score=127.82  Aligned_cols=120  Identities=18%  Similarity=0.270  Sum_probs=89.5

Q ss_pred             HHHHhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccC---------------CCCcEEEccCCCCCCCCCCccEE
Q 022592          132 IVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVDVA  193 (294)
Q Consensus       132 ~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~---------------~~~~~~~~d~~~lp~~~~~fD~V  193 (294)
                      ++..+....+ .+|||||||+|.++..++   ..|+|+|+|+               +++.+...|+..+++ +++||+|
T Consensus        22 ~~~~~~~~~~-grvLDiGcG~G~~~~~la~~g~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~I   99 (198)
T d2i6ga1          22 VLAAAKVVAP-GRTLDLGCGNGRNSLYLAANGYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTF-DGEYDFI   99 (198)
T ss_dssp             HHHHHTTSCS-CEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCC-CCCEEEE
T ss_pred             HHHHcccCCC-CcEEEECCCCCHHHHHHHHHhhhhccccCcHHHHHHHHHHhhhccccchhhhheecccccc-cccccEE
Confidence            4444444434 599999999999999987   3899999997               356788889988876 6789999


Q ss_pred             EEcccccCC---CHHHHHHHHHHhcCcCcEEEEEeecCCCC-----CCCCCCCHHHHHHHHHHCCCeEEE
Q 022592          194 VFCLSLMGI---NFPNYLQEAQRVLKPSGWLLIAEVKSRFD-----PNTGGADPNKFSKAVCDLGFAPVS  255 (294)
Q Consensus       194 i~~~~l~~~---~~~~~l~el~r~LkpgG~l~i~e~~~~~~-----~~~~~~~~~~~~~~l~~~Gf~~~~  255 (294)
                      ++..+++|.   +...+++++.++|+|||.+++........     +....++..++...+  .||+++.
T Consensus       100 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~--~~~~i~~  167 (198)
T d2i6ga1         100 LSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAAMDTPDFPCTVGFPFAFKEGELRRYY--EGWDMLK  167 (198)
T ss_dssp             EEESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEEEBC---------CCCCBCTTHHHHHT--TTSEEEE
T ss_pred             EEeeeeecCCHHHHHHHHHHHHHHcCCCcEEEEEEecCCccCCCCCCCCCccCHHHHHHHh--CCCeEEE
Confidence            999999995   34589999999999999999986543211     111124555676666  4787765

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.62  E-value=1.8e-15  Score=131.50  Aligned_cols=151  Identities=17%  Similarity=0.193  Sum_probs=106.1

Q ss_pred             HHhhhccCCCcHHHHHHHHhhccCCCCEEEEEcCcccHHHHHhcc-----ceEEEeccC---------------CCCcEE
Q 022592          117 YQEQMSHWPELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVKN-----KVFSFDLVS---------------NDPSVI  176 (294)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~~-----~v~gvD~s~---------------~~~~~~  176 (294)
                      |...+..+.......+++.+.-. ...+|||||||+|.++..++.     +++++|++.               +++.++
T Consensus        58 f~~~m~~~~~~~~~~~~~~~d~~-~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~~~~~~~~~~ri~~~  136 (256)
T d1qzza2          58 FDALMSCDEDLAYEAPADAYDWS-AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVA  136 (256)
T ss_dssp             HHHTCGGGSTTTTHHHHHTSCCT-TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEE
T ss_pred             HHHHHHhhHHHHHHHHHhcCCCc-cCCEEEEECCCCCHHHHHHHHhhcCcEEEEecChHHHHHHHHHHhhcCCcceeeee
Confidence            33333333333345555554433 456899999999999998872     789999854               467788


Q ss_pred             EccCCCCCCCCCCccEEEEcccccCCCH---HHHHHHHHHhcCcCcEEEEEeecCCCCC------------------CCC
Q 022592          177 ACDMSNTPLNSSSVDVAVFCLSLMGINF---PNYLQEAQRVLKPSGWLLIAEVKSRFDP------------------NTG  235 (294)
Q Consensus       177 ~~d~~~lp~~~~~fD~Vi~~~~l~~~~~---~~~l~el~r~LkpgG~l~i~e~~~~~~~------------------~~~  235 (294)
                      .+|+.. +.+ ..||+|++..+||+.+.   ..+|++++++|+|||.|+|.|.......                  ...
T Consensus       137 ~~d~~~-~~p-~~~D~v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~~~~~~~~~~~~~~~~~d~~ml~~~~g~  214 (256)
T d1qzza2         137 EGDFFK-PLP-VTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGR  214 (256)
T ss_dssp             ECCTTS-CCS-CCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCC
T ss_pred             eeeccc-ccc-ccchhhhccccccccCcHHHHHHHHHHHhhcCCcceeEEEEeccCCCCcccHHHHHHHHHHHHhhCCCc
Confidence            888865 444 45999999999998643   4789999999999999999874311000                  011


Q ss_pred             CCCHHHHHHHHHHCCCeEEEEec-----cCCeEEEEEEEE
Q 022592          236 GADPNKFSKAVCDLGFAPVSKDF-----SNKMFIMFYFKK  270 (294)
Q Consensus       236 ~~~~~~~~~~l~~~Gf~~~~~~~-----~~~~f~~i~~~k  270 (294)
                      .++.+++.++++++||+++....     ....|.+++++-
T Consensus       215 ~rt~~e~~~ll~~AGf~~~~~~~~~~~~~~~~~~v~E~~~  254 (256)
T d1qzza2         215 VRTRDEVVDLAGSAGLALASERTSGSTTLPFDFSILEFTA  254 (256)
T ss_dssp             CCCHHHHHHHHHTTTEEEEEEEEECCSSCSSCEEEEEEEE
T ss_pred             cCCHHHHHHHHHHCCCceeEEEEeCCcCccCceEEEEEEe
Confidence            25889999999999999988543     233577777754

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=1e-15  Score=133.53  Aligned_cols=116  Identities=16%  Similarity=0.214  Sum_probs=86.5

Q ss_pred             CCCEEEEEcCcccHHHHHhc----cceEEEeccCCCC-------------------------------------------
Q 022592          141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVSNDP-------------------------------------------  173 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~~~~-------------------------------------------  173 (294)
                      .+.+|||||||+|.+....+    .+|+|+|+|+.++                                           
T Consensus        54 ~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (263)
T d2g72a1          54 SGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRAR  133 (263)
T ss_dssp             CCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHH
T ss_pred             CCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhhhh
Confidence            56799999999998765443    3799999998211                                           


Q ss_pred             --cEEEccCCC------CCCCCCCccEEEEcccccCC-----CHHHHHHHHHHhcCcCcEEEEEeecCCCCC-------C
Q 022592          174 --SVIACDMSN------TPLNSSSVDVAVFCLSLMGI-----NFPNYLQEAQRVLKPSGWLLIAEVKSRFDP-------N  233 (294)
Q Consensus       174 --~~~~~d~~~------lp~~~~~fD~Vi~~~~l~~~-----~~~~~l~el~r~LkpgG~l~i~e~~~~~~~-------~  233 (294)
                        ....+|+..      .+...++||+|+++++|+|.     ++..++++++++|||||.|++.++......       .
T Consensus       134 ~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~~~~~~~~~  213 (263)
T d2g72a1         134 VKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARLT  213 (263)
T ss_dssp             EEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEEEE
T ss_pred             hhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCcccccCCcccc
Confidence              123455543      23445689999999999983     357899999999999999999875443211       1


Q ss_pred             CCCCCHHHHHHHHHHCCCeEEEE
Q 022592          234 TGGADPNKFSKAVCDLGFAPVSK  256 (294)
Q Consensus       234 ~~~~~~~~~~~~l~~~Gf~~~~~  256 (294)
                      ...++.+++.++|+.+||+++..
T Consensus       214 ~~~~t~e~v~~~l~~aGf~v~~~  236 (263)
T d2g72a1         214 VVPVSEEEVREALVRSGYKVRDL  236 (263)
T ss_dssp             CCCCCHHHHHHHHHHTTEEEEEE
T ss_pred             cCCCCHHHHHHHHHHCCCeEEEE
Confidence            22379999999999999998863

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.61  E-value=3.2e-15  Score=131.83  Aligned_cols=125  Identities=16%  Similarity=0.222  Sum_probs=98.6

Q ss_pred             HHHHHHhhccCCCCEEEEEcCcccHHHHHhc----cceEEEeccC----------------CCCcEEEccCCCCCCCCCC
Q 022592          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSS  189 (294)
Q Consensus       130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~----------------~~~~~~~~d~~~lp~~~~~  189 (294)
                      +.+++.+.. .++.+|||||||.|.++..++    .+|+|+++|+                .++.+..+|...++   ++
T Consensus        52 ~~~~~~l~l-~~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~---~~  127 (285)
T d1kpga_          52 DLALGKLGL-QPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD---EP  127 (285)
T ss_dssp             HHHHTTTTC-CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC---CC
T ss_pred             HHHHHHcCC-CCCCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhccc---cc
Confidence            345555554 488999999999999999887    4899999997                35677888877664   67


Q ss_pred             ccEEEEcccccCC---CHHHHHHHHHHhcCcCcEEEEEeecCC--------------------------CCCCCCCCCHH
Q 022592          190 VDVAVFCLSLMGI---NFPNYLQEAQRVLKPSGWLLIAEVKSR--------------------------FDPNTGGADPN  240 (294)
Q Consensus       190 fD~Vi~~~~l~~~---~~~~~l~el~r~LkpgG~l~i~e~~~~--------------------------~~~~~~~~~~~  240 (294)
                      ||.|++..+++|+   +...+++++.++|+|||.+++..+...                          +.|...-.+..
T Consensus       128 fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~fi~kyiFpgg~lPsl~  207 (285)
T d1kpga_         128 VDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIP  207 (285)
T ss_dssp             CSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCCHH
T ss_pred             ccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEEeccCchhhccccCCcchhhhchhhHHHHHhccCCCCCChh
Confidence            9999999999995   568999999999999999998765411                          11222225889


Q ss_pred             HHHHHHHHCCCeEEEEec
Q 022592          241 KFSKAVCDLGFAPVSKDF  258 (294)
Q Consensus       241 ~~~~~l~~~Gf~~~~~~~  258 (294)
                      ++..+++++||.++....
T Consensus       208 ~~~~~~e~agf~v~~~~~  225 (285)
T d1kpga_         208 MVQECASANGFTVTRVQS  225 (285)
T ss_dssp             HHHHHHHTTTCEEEEEEE
T ss_pred             hHHHHHHHhchhhccccc
Confidence            999999999999988654

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.61  E-value=9.2e-16  Score=135.17  Aligned_cols=124  Identities=15%  Similarity=0.235  Sum_probs=94.1

Q ss_pred             HHHHHHhhccCCCCEEEEEcCcccHHHHHhc----cceEEEeccCC----------------CCcEEEccCCCCCCCCCC
Q 022592          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVSN----------------DPSVIACDMSNTPLNSSS  189 (294)
Q Consensus       130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~~----------------~~~~~~~d~~~lp~~~~~  189 (294)
                      +.+++.+... ++.+|||||||+|.++..++    ..|+|+|+|+.                .+.+...|...+   +++
T Consensus        42 ~~~~~~l~l~-~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~---~~~  117 (280)
T d2fk8a1          42 DLNLDKLDLK-PGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF---AEP  117 (280)
T ss_dssp             HHHHTTSCCC-TTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC---CCC
T ss_pred             HHHHHHcCCC-CCCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhh---ccc
Confidence            4455555443 78899999999999998776    48999999972                334555555444   468


Q ss_pred             ccEEEEcccccCC---CHHHHHHHHHHhcCcCcEEEEEeecCC--------------------------CCCCCCCCCHH
Q 022592          190 VDVAVFCLSLMGI---NFPNYLQEAQRVLKPSGWLLIAEVKSR--------------------------FDPNTGGADPN  240 (294)
Q Consensus       190 fD~Vi~~~~l~~~---~~~~~l~el~r~LkpgG~l~i~e~~~~--------------------------~~~~~~~~~~~  240 (294)
                      ||.|++..+++|.   +...+++++.++|||||.+++..+...                          +.|...-.+.+
T Consensus       118 fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~dfI~kyifPgg~lPS~~  197 (280)
T d2fk8a1         118 VDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPSTE  197 (280)
T ss_dssp             CSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCCHH
T ss_pred             hhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEEeeccCcchhhhcccccccccccccchhhhhccCCCcccchH
Confidence            9999999999996   558999999999999999999653211                          12222235889


Q ss_pred             HHHHHHHHCCCeEEEEe
Q 022592          241 KFSKAVCDLGFAPVSKD  257 (294)
Q Consensus       241 ~~~~~l~~~Gf~~~~~~  257 (294)
                      ++..+++++||.++...
T Consensus       198 ~l~~~~e~aGf~v~~~~  214 (280)
T d2fk8a1         198 MMVEHGEKAGFTVPEPL  214 (280)
T ss_dssp             HHHHHHHHTTCBCCCCE
T ss_pred             hhhhhHHhhccccceee
Confidence            99999999999998744

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.60  E-value=1.9e-15  Score=131.22  Aligned_cols=129  Identities=19%  Similarity=0.316  Sum_probs=97.1

Q ss_pred             HHHHHHhhcc-CCCCEEEEEcCcccHHHHHhc---cceEEEeccCC--------------CCcEEEccCCCCCCCCCCcc
Q 022592          130 NIIVKWLKDH-SPSLVIADFGCGDARLAKSVK---NKVFSFDLVSN--------------DPSVIACDMSNTPLNSSSVD  191 (294)
Q Consensus       130 ~~~~~~l~~~-~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~~--------------~~~~~~~d~~~lp~~~~~fD  191 (294)
                      ..+++.+... .++.+|||+|||+|.++..++   .+|+|+|+|+.              +..++.+|+.. .++.++||
T Consensus       108 ~l~l~~l~~~~~~g~~VLDiGcGsG~l~i~aa~~g~~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~-~~~~~~fD  186 (254)
T d2nxca1         108 RLALKALARHLRPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEA-ALPFGPFD  186 (254)
T ss_dssp             HHHHHHHHHHCCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHH-HGGGCCEE
T ss_pred             hHHHHHHHhhcCccCEEEEcccchhHHHHHHHhcCCEEEEEECChHHHHHHHHHHHHcCCceeEEeccccc-cccccccc
Confidence            3345555432 477899999999999988776   48999999982              45677777754 34568899


Q ss_pred             EEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEEeccCCeEEEEEEEE
Q 022592          192 VAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSKDFSNKMFIMFYFKK  270 (294)
Q Consensus       192 ~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~f~~i~~~k  270 (294)
                      +|+++...+  ....++.++.++|||||+|+++++...        ..+.+.+.++++||.++...... .+.+++++|
T Consensus       187 ~V~ani~~~--~l~~l~~~~~~~LkpGG~lilSgil~~--------~~~~v~~~~~~~Gf~~~~~~~~~-~Wv~l~~~r  254 (254)
T d2nxca1         187 LLVANLYAE--LHAALAPRYREALVPGGRALLTGILKD--------RAPLVREAMAGAGFRPLEEAAEG-EWVLLAYGR  254 (254)
T ss_dssp             EEEEECCHH--HHHHHHHHHHHHEEEEEEEEEEEEEGG--------GHHHHHHHHHHTTCEEEEEEEET-TEEEEEEEC
T ss_pred             hhhhccccc--cHHHHHHHHHHhcCCCcEEEEEecchh--------hHHHHHHHHHHCCCEEEEEEEEC-CEEEEEEeC
Confidence            999864332  356788899999999999999876432        34788999999999998865544 467777765

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=3.3e-15  Score=130.97  Aligned_cols=124  Identities=15%  Similarity=0.158  Sum_probs=88.8

Q ss_pred             HHHHhhccCCCCEEEEEcCcccHHHHHhcc-----------ceEEEeccCC-------------CCcEE-----EccCC-
Q 022592          132 IVKWLKDHSPSLVIADFGCGDARLAKSVKN-----------KVFSFDLVSN-------------DPSVI-----ACDMS-  181 (294)
Q Consensus       132 ~~~~l~~~~~~~~VLDiGcG~G~~~~~l~~-----------~v~gvD~s~~-------------~~~~~-----~~d~~-  181 (294)
                      ++..+....+..+|||||||+|.++..++.           .++|+|+|+.             ++..+     ..+++ 
T Consensus        31 ~l~~l~~~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~  110 (280)
T d1jqea_          31 IIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSE  110 (280)
T ss_dssp             HTTTTTTTCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHH
T ss_pred             HHHHhccCCCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhh
Confidence            344444333445899999999998776641           5789999871             22222     22221 


Q ss_pred             -----CCCCCCCCccEEEEcccccCC-CHHHHHHHHHHhcCcCcEEEEEeecCC-------------C--CCCCCCCCHH
Q 022592          182 -----NTPLNSSSVDVAVFCLSLMGI-NFPNYLQEAQRVLKPSGWLLIAEVKSR-------------F--DPNTGGADPN  240 (294)
Q Consensus       182 -----~lp~~~~~fD~Vi~~~~l~~~-~~~~~l~el~r~LkpgG~l~i~e~~~~-------------~--~~~~~~~~~~  240 (294)
                           ..+.++++||+|++.++|+|. ++..+++++.++|+|||.|+++.....             +  ......++.+
T Consensus       111 ~~~~~~~~~~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  190 (280)
T d1jqea_         111 YQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRFPQDDLCQYITSD  190 (280)
T ss_dssp             HHHHHTTSSSCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECTTSHHHHHHHHHGGGSCCCTTSCCCCHH
T ss_pred             hcchhcccCCCCceeEEEEccceecCCCHHHHHHHHHhhCCCCCEEEEEEecCcchHHHHHHHHHHhcCCCcccccCCHH
Confidence                 235667899999999999996 899999999999999999999864321             1  1122347889


Q ss_pred             HHHHHHHHCCCeEEE
Q 022592          241 KFSKAVCDLGFAPVS  255 (294)
Q Consensus       241 ~~~~~l~~~Gf~~~~  255 (294)
                      ++..+|.+.||..+.
T Consensus       191 ~~~~~L~~~G~~~~~  205 (280)
T d1jqea_         191 DLTQMLDNLGLKYEC  205 (280)
T ss_dssp             HHHHHHHHHTCCEEE
T ss_pred             HHHHHHHHCCCceEE
Confidence            999999999997655

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.58  E-value=2.1e-15  Score=124.31  Aligned_cols=125  Identities=8%  Similarity=0.013  Sum_probs=92.1

Q ss_pred             HHHHHHHhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccC---------------------------CCCcEEEc
Q 022592          129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS---------------------------NDPSVIAC  178 (294)
Q Consensus       129 ~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~---------------------------~~~~~~~~  178 (294)
                      +..++..|... ++.+|||+|||+|.++..|+   ..|+|+|+|+                           ....+..+
T Consensus         9 ~~~~~~~l~~~-~~~rvLd~GCG~G~~a~~la~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (201)
T d1pjza_           9 LQQYWSSLNVV-PGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCG   87 (201)
T ss_dssp             HHHHHHHHCCC-TTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEE
T ss_pred             HHHHHHHcCCC-CCCEEEEecCcCCHHHHHHHHcCCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecc
Confidence            34445555443 77899999999999999998   3899999996                           13467788


Q ss_pred             cCCCCCC-CCCCccEEEEcccccCC---CHHHHHHHHHHhcCcCcEEEEEeecCCCCCC---CCCCCHHHHHHHHHHCCC
Q 022592          179 DMSNTPL-NSSSVDVAVFCLSLMGI---NFPNYLQEAQRVLKPSGWLLIAEVKSRFDPN---TGGADPNKFSKAVCDLGF  251 (294)
Q Consensus       179 d~~~lp~-~~~~fD~Vi~~~~l~~~---~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~---~~~~~~~~~~~~l~~~Gf  251 (294)
                      |+..++. ....||+|++..+++|.   +...+++.++++|||||.+++..........   ....+.+++..++. .+|
T Consensus        88 d~~~l~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~~~~~~~~~p~~~~~~~el~~l~~-~~~  166 (201)
T d1pjza_          88 DFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQALLEGPPFSVPQTWLHRVMS-GNW  166 (201)
T ss_dssp             CCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSSSCCCCCCHHHHHHTSC-SSE
T ss_pred             cccccccccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEcccccccCCCccccCCHHHHHHHhC-CCc
Confidence            8887663 34679999999999996   3568999999999999999887654432221   12357777777664 466


Q ss_pred             eEEE
Q 022592          252 APVS  255 (294)
Q Consensus       252 ~~~~  255 (294)
                      .+..
T Consensus       167 ~i~~  170 (201)
T d1pjza_         167 EVTK  170 (201)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6543

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.58  E-value=3.8e-15  Score=128.88  Aligned_cols=85  Identities=16%  Similarity=0.239  Sum_probs=71.2

Q ss_pred             CCCCEEEEEcCcccHHHHHhc----cceEEEeccC----------------CCCcEEEccCCCCCC-CCCCccEEEEccc
Q 022592          140 SPSLVIADFGCGDARLAKSVK----NKVFSFDLVS----------------NDPSVIACDMSNTPL-NSSSVDVAVFCLS  198 (294)
Q Consensus       140 ~~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~----------------~~~~~~~~d~~~lp~-~~~~fD~Vi~~~~  198 (294)
                      .++.+|||||||+|.++..++    ..|+|+|+|+                .++.+.++|+...++ ..++||+|++.++
T Consensus        23 ~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~~~  102 (252)
T d1ri5a_          23 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFS  102 (252)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESC
T ss_pred             CCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEcce
Confidence            366799999999999877775    3699999998                146788999987765 4678999999999


Q ss_pred             ccCC-----CHHHHHHHHHHhcCcCcEEEEE
Q 022592          199 LMGI-----NFPNYLQEAQRVLKPSGWLLIA  224 (294)
Q Consensus       199 l~~~-----~~~~~l~el~r~LkpgG~l~i~  224 (294)
                      +||.     +...++.++.++|+|||.|++.
T Consensus       103 l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~  133 (252)
T d1ri5a_         103 FHYAFSTSESLDIAQRNIARHLRPGGYFIMT  133 (252)
T ss_dssp             GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             eeecCCCHHHHHHHHHHHhceeCCCCEEEEE
Confidence            9983     2457999999999999999885

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.56  E-value=6.5e-15  Score=125.99  Aligned_cols=117  Identities=15%  Similarity=0.133  Sum_probs=89.8

Q ss_pred             CCCCEEEEEcCcccHHHHHhc-----cceEEEeccC-------------CCCcEEEccCCCC-CCCCCCccEEEEccccc
Q 022592          140 SPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS-------------NDPSVIACDMSNT-PLNSSSVDVAVFCLSLM  200 (294)
Q Consensus       140 ~~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~-------------~~~~~~~~d~~~l-p~~~~~fD~Vi~~~~l~  200 (294)
                      .|+.+|||||||+|..+..++     ..|+|+|+|+             .++..+.+|.... ++.+..+|++++...++
T Consensus        73 kpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v~~i~~~~~  152 (230)
T d1g8sa_          73 KRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIYEDVA  152 (230)
T ss_dssp             CTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTCCCEEEEEECCC
T ss_pred             CCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCcccccccceeEEeecccc
Confidence            478899999999999988887     3799999998             4566777777654 34566788888777777


Q ss_pred             CC-CHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCC-CCHHHHHHHHHHCCCeEEEE
Q 022592          201 GI-NFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGG-ADPNKFSKAVCDLGFAPVSK  256 (294)
Q Consensus       201 ~~-~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~-~~~~~~~~~l~~~Gf~~~~~  256 (294)
                      +. ++..++.++.+.|||||.++++............ ...+++.+.|+++||++++.
T Consensus       153 ~~~~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~~~~~~e~~~~L~~aGF~ive~  210 (230)
T d1g8sa_         153 QPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKEILEAGGFKIVDE  210 (230)
T ss_dssp             STTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHHHHHHHTEEEEEE
T ss_pred             chHHHHHHHHHHHHhcccCceEEEEeeccccCCCCCHHHHHHHHHHHHHHcCCEEEEE
Confidence            75 6788999999999999999998755443322111 23356778899999999884

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.52  E-value=2.1e-14  Score=119.36  Aligned_cols=130  Identities=15%  Similarity=0.176  Sum_probs=93.4

Q ss_pred             HHHHHHhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccC-----------------CCCcEEEccCCCCCCCCCC
Q 022592          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS-----------------NDPSVIACDMSNTPLNSSS  189 (294)
Q Consensus       130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~-----------------~~~~~~~~d~~~lp~~~~~  189 (294)
                      +.+++.+... ++.+|||||||+|.++..++   ..|+++|+|+                 .++.+..+|+.. ++++++
T Consensus        42 ~lLi~~l~~~-~~~~VLDiGcG~G~~~~~la~~~~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~-~~~~~~  119 (194)
T d1dusa_          42 KILVENVVVD-KDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE-NVKDRK  119 (194)
T ss_dssp             HHHHHHCCCC-TTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT-TCTTSC
T ss_pred             HHHHHhCCcC-CCCeEEEEeecCChhHHHHHhhccccceeeeccccchhHHHHHHHhCCccceEEEEEcchhh-hhccCC
Confidence            4456666544 67799999999999999887   4899999997                 246788889876 566889


Q ss_pred             ccEEEEcccccCC-C-HHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEEeccCCeEEEEE
Q 022592          190 VDVAVFCLSLMGI-N-FPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSKDFSNKMFIMFY  267 (294)
Q Consensus       190 fD~Vi~~~~l~~~-~-~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~f~~i~  267 (294)
                      ||+|++...+++. + ...+++++.++|+|||.+++......        ....+...+++.... +........|.++.
T Consensus       120 fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~--------~~~~~~~~l~~~f~~-~~~~~~~~gf~vl~  190 (194)
T d1dusa_         120 YNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQTKQ--------GAKSLAKYMKDVFGN-VETVTIKGGYRVLK  190 (194)
T ss_dssp             EEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEESTH--------HHHHHHHHHHHHHSC-CEEEEEETTEEEEE
T ss_pred             ceEEEEcccEEecchhhhhHHHHHHHhcCcCcEEEEEEeCcC--------CHHHHHHHHHHhCCc-EEEEEecCCcEEEE
Confidence            9999999888774 3 46889999999999999987532211        124455555553222 23333445677777


Q ss_pred             EEE
Q 022592          268 FKK  270 (294)
Q Consensus       268 ~~k  270 (294)
                      .+|
T Consensus       191 a~K  193 (194)
T d1dusa_         191 SKK  193 (194)
T ss_dssp             EEC
T ss_pred             EEE
Confidence            766

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.51  E-value=3.5e-14  Score=122.38  Aligned_cols=138  Identities=17%  Similarity=0.213  Sum_probs=104.1

Q ss_pred             HHHHHHhhccCCCCEEEEEcCcccHHHHHhc-----cceEEEeccC--------CCCcEEEccCCCCCCCCCCccEEEEc
Q 022592          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS--------NDPSVIACDMSNTPLNSSSVDVAVFC  196 (294)
Q Consensus       130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~--------~~~~~~~~d~~~lp~~~~~fD~Vi~~  196 (294)
                      ..+++.+..-....+|||||||+|.++..++     -+++.+|+..        +++.++.+|+.+ +.|  ..|++++.
T Consensus        70 ~~l~~~~~~f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~ri~~~~gd~~~-~~p--~~D~~~l~  146 (244)
T d1fp1d2          70 KRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEHVGGDMFA-SVP--QGDAMILK  146 (244)
T ss_dssp             HHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTT-CCC--CEEEEEEE
T ss_pred             HHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecchhhhhccCCCCCeEEecCCccc-ccc--cceEEEEe
Confidence            4455555422244689999999999999887     2788899765        678899999865 333  35999999


Q ss_pred             ccccCCC---HHHHHHHHHHhcCcCcEEEEEeecCCCCCC--------------------CCCCCHHHHHHHHHHCCCeE
Q 022592          197 LSLMGIN---FPNYLQEAQRVLKPSGWLLIAEVKSRFDPN--------------------TGGADPNKFSKAVCDLGFAP  253 (294)
Q Consensus       197 ~~l~~~~---~~~~l~el~r~LkpgG~l~i~e~~~~~~~~--------------------~~~~~~~~~~~~l~~~Gf~~  253 (294)
                      .+||+.+   ...+|+.+++.|+|||.++|.|..-.-.+.                    ....+.+++..+|+++||+.
T Consensus       147 ~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~~~~g~ert~~e~~~ll~~AGF~~  226 (244)
T d1fp1d2         147 AVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSK  226 (244)
T ss_dssp             SSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCSE
T ss_pred             hhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEEecCCCCCchHHHHHHHHHHHHHhhCCCcCCCHHHHHHHHHHcCCCc
Confidence            9999853   457899999999999999999853211110                    11147899999999999999


Q ss_pred             EEEe-ccCCeEEEEEEEE
Q 022592          254 VSKD-FSNKMFIMFYFKK  270 (294)
Q Consensus       254 ~~~~-~~~~~f~~i~~~k  270 (294)
                      +++. .....+.+|+++|
T Consensus       227 v~v~~~~~~~~~viE~~K  244 (244)
T d1fp1d2         227 FQVACRAFNSLGVMEFYK  244 (244)
T ss_dssp             EEEEEEETTTEEEEEEEC
T ss_pred             eEEEecCCCCEEEEEEeC
Confidence            8864 4456788999886

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.49  E-value=2.7e-14  Score=120.36  Aligned_cols=116  Identities=13%  Similarity=0.095  Sum_probs=81.5

Q ss_pred             CCCCEEEEEcCcccHHHHHhc-----cceEEEeccC-------------CCCcEEEccCCCCCCCCCCccEEEE-ccccc
Q 022592          140 SPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS-------------NDPSVIACDMSNTPLNSSSVDVAVF-CLSLM  200 (294)
Q Consensus       140 ~~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~-------------~~~~~~~~d~~~lp~~~~~fD~Vi~-~~~l~  200 (294)
                      .|+.+|||||||+|..+..++     ..|+|+|+|+             .++.++..|+...+.....+|.|.+ ...+.
T Consensus        55 kpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~vd~v~~~~~  134 (209)
T d1nt2a_          55 RGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQDIA  134 (209)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEECCC
T ss_pred             CCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceEEEEEeccc
Confidence            478899999999999888776     3799999998             4778889998887665555554432 23455


Q ss_pred             C-CCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCC-CCHHHHHHHHHHCCCeEEEE
Q 022592          201 G-INFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGG-ADPNKFSKAVCDLGFAPVSK  256 (294)
Q Consensus       201 ~-~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~-~~~~~~~~~l~~~Gf~~~~~  256 (294)
                      | .+...+++++.++|||||.++++............ .........+ .+||++++.
T Consensus       135 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~d~~~~~~~~~~~~~~~l-~~gf~i~E~  191 (209)
T d1nt2a_         135 QKNQIEILKANAEFFLKEKGEVVIMVKARSIDSTAEPEEVFKSVLKEM-EGDFKIVKH  191 (209)
T ss_dssp             STTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSCHHHHHHHHHHHH-HTTSEEEEE
T ss_pred             ChhhHHHHHHHHHHHhccCCeEEEEEEccccCCCCCHHHHHHHHHHHH-HcCCEEEEE
Confidence            5 47789999999999999999998754433221111 0112222333 379999873

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.44  E-value=9.7e-14  Score=114.59  Aligned_cols=114  Identities=19%  Similarity=0.307  Sum_probs=89.8

Q ss_pred             HHHHHHhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccC----------------CCCcEEEccCCCCCCCCCCc
Q 022592          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSV  190 (294)
Q Consensus       130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~----------------~~~~~~~~d~~~lp~~~~~f  190 (294)
                      ..++..+... ++.+|||||||+|.++..++   .+|+|+|+++                ++++++.+|+.+.+.+...|
T Consensus        23 ~~il~~l~~~-~g~~VLDiGcGsG~~s~~lA~~~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~~~  101 (186)
T d1l3ia_          23 CLIMCLAEPG-KNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDI  101 (186)
T ss_dssp             HHHHHHHCCC-TTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCE
T ss_pred             HHHHHhcCCC-CCCEEEEEECCeEcccccccccceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccCCc
Confidence            4456666554 78899999999999998887   4899999997                47789999998887778899


Q ss_pred             cEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEE
Q 022592          191 DVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPV  254 (294)
Q Consensus       191 D~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~  254 (294)
                      |+|++....+  +...+++.+.++|+|||++++......        +...+.+.+...||...
T Consensus       102 D~v~~~~~~~--~~~~~~~~~~~~LkpgG~lvi~~~~~e--------~~~~~~~~l~~~~~~~~  155 (186)
T d1l3ia_         102 DIAVVGGSGG--ELQEILRIIKDKLKPGGRIIVTAILLE--------TKFEAMECLRDLGFDVN  155 (186)
T ss_dssp             EEEEESCCTT--CHHHHHHHHHHTEEEEEEEEEEECBHH--------HHHHHHHHHHHTTCCCE
T ss_pred             CEEEEeCccc--cchHHHHHHHHHhCcCCEEEEEeeccc--------cHHHHHHHHHHcCCCeE
Confidence            9999876543  467889999999999999988653211        23556678888888543

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=9.9e-15  Score=124.61  Aligned_cols=125  Identities=16%  Similarity=0.152  Sum_probs=83.8

Q ss_pred             HHHHHHhhccCCCCEEEEEcCcccHHHHHhc----cceEEEeccC--------------CCCcEEEccCCC--CCCCCCC
Q 022592          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS--------------NDPSVIACDMSN--TPLNSSS  189 (294)
Q Consensus       130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~--------------~~~~~~~~d~~~--lp~~~~~  189 (294)
                      +.+...+.  .++.+|||||||+|..+..++    ..|+|+|+|+              ..+.++..++..  .++++++
T Consensus        44 ~~la~~~~--~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (229)
T d1zx0a1          44 HALAAAAS--SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGH  121 (229)
T ss_dssp             HHHHHHHT--TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTC
T ss_pred             HHHHHhhc--cCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhccccccccccccccccccccccc
Confidence            33444443  356799999999999998886    3799999998              233445555433  4567889


Q ss_pred             ccEEEE-----cccccCC-CHHHHHHHHHHhcCcCcEEEEEeecCC---CCCCCCC---CCHHHHHHHHHHCCCeEEEE
Q 022592          190 VDVAVF-----CLSLMGI-NFPNYLQEAQRVLKPSGWLLIAEVKSR---FDPNTGG---ADPNKFSKAVCDLGFAPVSK  256 (294)
Q Consensus       190 fD~Vi~-----~~~l~~~-~~~~~l~el~r~LkpgG~l~i~e~~~~---~~~~~~~---~~~~~~~~~l~~~Gf~~~~~  256 (294)
                      ||.|++     ...++|. ++..+++++.|+|||||.|++.+....   .......   .....+...|.++||++..+
T Consensus       122 fD~i~fD~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~agF~~~~i  200 (229)
T d1zx0a1         122 FDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKSKYSDITIMFEETQVPALLEAGFRRENI  200 (229)
T ss_dssp             EEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHHHHHHHTTTTCSCHHHHHHHHTHHHHHHTTCCGGGE
T ss_pred             ccceeecccccccccccccCHHHHHHHHHHHcCCCcEEEEEecCCcchhhhhhhhhcchhhhhHHHHHHHHCCCeeEEE
Confidence            999884     4455554 788999999999999999988542211   1110011   12345567788899976543

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.43  E-value=4.7e-13  Score=113.95  Aligned_cols=126  Identities=18%  Similarity=0.247  Sum_probs=87.4

Q ss_pred             CCCCEEEEEcCcccHHHHHhc------cceEEEeccC-------------CCCcEEEccCCC---CCCCCCCccEEEEcc
Q 022592          140 SPSLVIADFGCGDARLAKSVK------NKVFSFDLVS-------------NDPSVIACDMSN---TPLNSSSVDVAVFCL  197 (294)
Q Consensus       140 ~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~-------------~~~~~~~~d~~~---lp~~~~~fD~Vi~~~  197 (294)
                      .|+.+|||+|||+|.++..++      ..|+|+|+++             .++..+..|...   .+.....+|+|++. 
T Consensus        72 ~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~vD~i~~d-  150 (227)
T d1g8aa_          72 KPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFED-  150 (227)
T ss_dssp             CTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEEC-
T ss_pred             CCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccceEEEEEE-
Confidence            488999999999999998887      4899999998             355667777654   33445678887653 


Q ss_pred             cccC-CCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHH---HHHHHHCCCeEEEE-ecc--CCeEEEEEEEE
Q 022592          198 SLMG-INFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKF---SKAVCDLGFAPVSK-DFS--NKMFIMFYFKK  270 (294)
Q Consensus       198 ~l~~-~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~---~~~l~~~Gf~~~~~-~~~--~~~f~~i~~~k  270 (294)
                       +.+ .+...++.++.+.|||||.++++.........   ...+.+   ...+.+.||++.+. +..  ...++++++||
T Consensus       151 -~~~~~~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~---~~~~~v~~~v~~l~~~gf~iie~i~L~p~~~~H~~vv~rK  226 (227)
T d1g8aa_         151 -VAQPTQAKILIDNAEVYLKRGGYGMIAVKSRSIDVT---KEPEQVFREVERELSEYFEVIERLNLEPYEKDHALFVVRK  226 (227)
T ss_dssp             -CCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCTT---SCHHHHHHHHHHHHHTTSEEEEEEECTTTSSSEEEEEEEC
T ss_pred             -ccccchHHHHHHHHHHhcccCCeEEEEEECCccCCC---CCHHHHHHHHHHHHHcCCEEEEEEcCCCCCCceEEEEEEe
Confidence             444 46778999999999999999998654433322   122322   23355679999874 222  22356777766

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.43  E-value=1.2e-12  Score=112.61  Aligned_cols=163  Identities=15%  Similarity=0.256  Sum_probs=112.4

Q ss_pred             HHHHHhcChhhHHHHHHhHHhhhccCCCcHHHHHHHHhhccCCCCEEEEEcCcccHHHHHhc-----cceEEEeccC---
Q 022592           99 ALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---  170 (294)
Q Consensus        99 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~---  170 (294)
                      .++++.++++....+...+....    ......++..+.......+|||||||+|.++..++     .+++++|+..   
T Consensus        43 ~~~~~~~~p~~~~~F~~aM~~~~----~~~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~  118 (243)
T d1kyza2          43 AFEYHGTDPRFNKVFNKGMSDHS----TITMKKILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIE  118 (243)
T ss_dssp             HHHHGGGCHHHHHHHHHHHHHHH----HHHHHHHHHHCCTTSSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTTTT
T ss_pred             HHHHHHhCHHHHHHHHHHHhHhh----hhHHHHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHhhh
Confidence            34556666655544444332221    22234445544333234689999999999999887     2789999876   


Q ss_pred             -----CCCcEEEccCCCCCCCCCCccEEEEcccccCC---CHHHHHHHHHHhcCcCcEEEEEeecCCC------------
Q 022592          171 -----NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGI---NFPNYLQEAQRVLKPSGWLLIAEVKSRF------------  230 (294)
Q Consensus       171 -----~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~---~~~~~l~el~r~LkpgG~l~i~e~~~~~------------  230 (294)
                           .++.++.+|+.. +.|.  .|++++..++|..   +...+|+++++.|+|||.++|.+..-.-            
T Consensus       119 ~~~~~~r~~~~~~d~~~-~~P~--ad~~~l~~vlh~~~d~~~~~iL~~~~~al~pgg~~li~d~~~~~~~~~~~~~~~~~  195 (243)
T d1kyza2         119 DAPSYPGVEHVGGDMFV-SIPK--ADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECILPVAPDSSLATKGVV  195 (243)
T ss_dssp             TCCCCTTEEEEECCTTT-CCCC--CSCEECSSSSTTSCHHHHHHHHHHHHHHCCSSSCEEEEECEECSSCCCCHHHHHHH
T ss_pred             hcccCCceEEecccccc-cCCC--cceEEEEEEeecCCHHHHHHHHHHHHHhcCCCceEEEEEEEecCCCCCchhhHHHH
Confidence                 577899999865 3343  5778888898864   4568999999999999999998643110            


Q ss_pred             ---------CCCCCCCCHHHHHHHHHHCCCeEEEEeccCCeEEEEEE
Q 022592          231 ---------DPNTGGADPNKFSKAVCDLGFAPVSKDFSNKMFIMFYF  268 (294)
Q Consensus       231 ---------~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~f~~i~~  268 (294)
                               .......+.+++.++|+++||+.+++........+|+|
T Consensus       196 ~~d~~ml~~~~~g~ert~~e~~~ll~~AGf~~vkv~~~~~~~~viE~  242 (243)
T d1kyza2         196 HIDVIMLAHNPGGKERTQKEFEDLAKGAGFQGFKVHCNAFNTYIMEF  242 (243)
T ss_dssp             HHHHHHHHHCSSCCCEEHHHHHHHHHHHCCSCEEEEEEETTEEEEEE
T ss_pred             HHHHHHHhhCCCCCcCCHHHHHHHHHHcCCCcEEEEEeCCCCEEEEe
Confidence                     01111257899999999999999997766666677776

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.40  E-value=1.1e-12  Score=112.80  Aligned_cols=126  Identities=17%  Similarity=0.180  Sum_probs=97.9

Q ss_pred             CCCEEEEEcCcccHHHHHhc-----cceEEEeccC--------CCCcEEEccCCCCCCCCCCccEEEEcccccCCC---H
Q 022592          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS--------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGIN---F  204 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~--------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~~---~  204 (294)
                      ...+|||||||+|.++..++     .+++.+|+..        +++.++.+|+.+. .+  .+|++++..+||+.+   .
T Consensus        80 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~rv~~~~gD~f~~-~p--~aD~~~l~~vLHdw~d~~~  156 (244)
T d1fp2a2          80 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMFTS-IP--NADAVLLKYILHNWTDKDC  156 (244)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCBTTEEEEECCTTTC-CC--CCSEEEEESCGGGSCHHHH
T ss_pred             CceEEEEecCCccHHHHHHHHhCCCCeEEEecCHHHHHhCcccCceEEEecCcccC-CC--CCcEEEEEeecccCChHHH
Confidence            34589999999999999886     2788999865        6889999999763 33  479999999999853   3


Q ss_pred             HHHHHHHHHhcCcC---cEEEEEeecCCC-------------------CCCCCCCCHHHHHHHHHHCCCeEEEEeccCCe
Q 022592          205 PNYLQEAQRVLKPS---GWLLIAEVKSRF-------------------DPNTGGADPNKFSKAVCDLGFAPVSKDFSNKM  262 (294)
Q Consensus       205 ~~~l~el~r~Lkpg---G~l~i~e~~~~~-------------------~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~  262 (294)
                      ..+|+.+++.|+||   |.++|.+..-.-                   .......+.+++.++++++||+++++......
T Consensus       157 ~~iL~~~~~al~pgg~~~~lli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~G~ert~~e~~~ll~~AGf~~~~i~~~~~~  236 (244)
T d1fp2a2         157 LRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEAGFQHYKISPLTGF  236 (244)
T ss_dssp             HHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHHHHHHTTCCEEEEEEEETT
T ss_pred             HHHHHHHHHHcCcccCCcEEEEEEeecCCCCCCchHHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHcCCceEEEEECCCC
Confidence            47899999999998   788887632110                   00112258899999999999999997766677


Q ss_pred             EEEEEEE
Q 022592          263 FIMFYFK  269 (294)
Q Consensus       263 f~~i~~~  269 (294)
                      +.+|+++
T Consensus       237 ~svIE~~  243 (244)
T d1fp2a2         237 LSLIEIY  243 (244)
T ss_dssp             EEEEEEE
T ss_pred             eEEEEEe
Confidence            8888765

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.38  E-value=2.2e-12  Score=113.51  Aligned_cols=92  Identities=17%  Similarity=0.246  Sum_probs=66.9

Q ss_pred             HHHHHhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccCCC-------------------CcEEEccCCC----CC
Q 022592          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVSND-------------------PSVIACDMSN----TP  184 (294)
Q Consensus       131 ~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~~~-------------------~~~~~~d~~~----lp  184 (294)
                      .++..+... ++.+|||||||+|.++..|+   ..|+|+|+|+..                   ..+..+++..    +|
T Consensus        47 ~l~~~l~~~-~~~~vLD~GcG~G~~~~~la~~g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (292)
T d1xvaa_          47 WLLGLLRQH-GCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVP  125 (292)
T ss_dssp             HHHHHHHHT-TCCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSC
T ss_pred             HHHHHhhhc-CCCEEEEecCCCcHHHHHHHHcCCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccC
Confidence            345555554 55699999999999999887   389999999721                   1233334332    23


Q ss_pred             CCCCCccEEEEc-ccccCC--------CHHHHHHHHHHhcCcCcEEEEE
Q 022592          185 LNSSSVDVAVFC-LSLMGI--------NFPNYLQEAQRVLKPSGWLLIA  224 (294)
Q Consensus       185 ~~~~~fD~Vi~~-~~l~~~--------~~~~~l~el~r~LkpgG~l~i~  224 (294)
                      . .++||+|++. .+++|.        +...+|++++++|||||.|++.
T Consensus       126 ~-~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~  173 (292)
T d1xvaa_         126 A-GDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVID  173 (292)
T ss_dssp             C-TTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             C-CCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEe
Confidence            2 4679999975 477773        2457999999999999999984

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.37  E-value=5.7e-13  Score=111.62  Aligned_cols=106  Identities=10%  Similarity=0.159  Sum_probs=82.4

Q ss_pred             CCEEEEEcCcccHHHHHhc-----cceEEEeccC---------------CCCcEEEccCCCCC--CCCCCccEEEEcccc
Q 022592          142 SLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSNTP--LNSSSVDVAVFCLSL  199 (294)
Q Consensus       142 ~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~---------------~~~~~~~~d~~~lp--~~~~~fD~Vi~~~~l  199 (294)
                      ...|||||||+|.++..++     ..++|+|++.               .|+.++.+|+..+.  ++++++|.|++.+..
T Consensus        30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp~  109 (204)
T d2fcaa1          30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFSD  109 (204)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESCC
T ss_pred             CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhcccccccc
Confidence            4589999999999999887     3799999987               47889999998765  788999999998888


Q ss_pred             cCCCH---------HHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEE
Q 022592          200 MGINF---------PNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVS  255 (294)
Q Consensus       200 ~~~~~---------~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~  255 (294)
                      .|...         ..++.++.|+|||||.|++..-...+        .+.+...+.+.|+....
T Consensus       110 P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~TD~~~y--------~~~~~~~~~~~~~~~~~  166 (204)
T d2fcaa1         110 PWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGL--------FEYSLKSFSEYGLLLTY  166 (204)
T ss_dssp             CCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHHH--------HHHHHHHHHHHTCEEEE
T ss_pred             ccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEECChHH--------HHHHHHHHHHCCCcccc
Confidence            77421         48999999999999999986411111        14556667777765443

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.36  E-value=6.9e-13  Score=111.88  Aligned_cols=90  Identities=14%  Similarity=0.214  Sum_probs=73.6

Q ss_pred             HHHHHHHhhccCCCCEEEEEcCcccHHHHHhc------cceEEEeccC---------------CCCcEEEccCCCCCCCC
Q 022592          129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS---------------NDPSVIACDMSNTPLNS  187 (294)
Q Consensus       129 ~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~---------------~~~~~~~~d~~~lp~~~  187 (294)
                      +..+++.+... ++.+|||||||+|.++..++      ..|+++|+++               .++.++.+|....+..+
T Consensus        64 ~a~~l~~l~l~-~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~  142 (213)
T d1dl5a1          64 MALFMEWVGLD-KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEF  142 (213)
T ss_dssp             HHHHHHHTTCC-TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGG
T ss_pred             hHHHHHhhhcc-ccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHccccc
Confidence            34567776654 78899999999999888775      2699999987               46778889988877778


Q ss_pred             CCccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEE
Q 022592          188 SSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIA  224 (294)
Q Consensus       188 ~~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~  224 (294)
                      ++||+|++..++++..     .++.+.|+|||+|++.
T Consensus       143 ~~fD~I~~~~~~~~~p-----~~l~~~LkpGG~lv~p  174 (213)
T d1dl5a1         143 SPYDVIFVTVGVDEVP-----ETWFTQLKEGGRVIVP  174 (213)
T ss_dssp             CCEEEEEECSBBSCCC-----HHHHHHEEEEEEEEEE
T ss_pred             cchhhhhhhccHHHhH-----HHHHHhcCCCcEEEEE
Confidence            8999999999988753     3567889999999884

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.32  E-value=8.3e-13  Score=114.64  Aligned_cols=113  Identities=19%  Similarity=0.261  Sum_probs=87.0

Q ss_pred             HHHHHHhhccCCCCEEEEEcCcccHHHHHhc------cceEEEeccC------------------CCCcEEEccCCCCCC
Q 022592          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS------------------NDPSVIACDMSNTPL  185 (294)
Q Consensus       130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~------------------~~~~~~~~d~~~lp~  185 (294)
                      ..++..+... |+.+|||+|||+|.++..|+      .+|+++|+++                  .++.+..+|+.+.++
T Consensus        86 s~Ii~~l~i~-PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~  164 (264)
T d1i9ga_          86 AQIVHEGDIF-PGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSEL  164 (264)
T ss_dssp             HHHHHHTTCC-TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCC
T ss_pred             HHHHHHhCCC-CCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccccc
Confidence            4466666555 88999999999999998886      3899999996                  467789999998899


Q ss_pred             CCCCccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHH-HHCCCeEEE
Q 022592          186 NSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAV-CDLGFAPVS  255 (294)
Q Consensus       186 ~~~~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l-~~~Gf~~~~  255 (294)
                      ++++||.|++    +-.++..++.++.++|||||.+++....  ..      ....+.+.| .+.||..++
T Consensus       165 ~~~~fDaV~l----dlp~P~~~l~~~~~~LkpGG~lv~~~P~--i~------Qv~~~~~~l~~~~~f~~i~  223 (264)
T d1i9ga_         165 PDGSVDRAVL----DMLAPWEVLDAVSRLLVAGGVLMVYVAT--VT------QLSRIVEALRAKQCWTEPR  223 (264)
T ss_dssp             CTTCEEEEEE----ESSCGGGGHHHHHHHEEEEEEEEEEESS--HH------HHHHHHHHHHHHSSBCCCE
T ss_pred             cCCCcceEEE----ecCCHHHHHHHHHhccCCCCEEEEEeCc--cC------hHHHHHHHHHHcCCeecce
Confidence            9999999985    3368889999999999999999886421  11      123444555 466786544

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.31  E-value=4.6e-12  Score=113.42  Aligned_cols=83  Identities=17%  Similarity=0.241  Sum_probs=71.3

Q ss_pred             CCCEEEEEcCcccHHHHHhc----cceEEEeccC---------------CCCcEEEccCCCCCCCCCCccEEEEcccccC
Q 022592          141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMG  201 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~---------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~  201 (294)
                      ++.+|||||||+|.++..++    ..|+|+|.|+               .++.++.+|+.++++++++||+|++....++
T Consensus        38 ~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~~~  117 (328)
T d1g6q1_          38 KDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYF  117 (328)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTCCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBTT
T ss_pred             CcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEeccee
Confidence            67799999999999988776    3899999997               3677899999999999999999999776664


Q ss_pred             ----CCHHHHHHHHHHhcCcCcEEEE
Q 022592          202 ----INFPNYLQEAQRVLKPSGWLLI  223 (294)
Q Consensus       202 ----~~~~~~l~el~r~LkpgG~l~i  223 (294)
                          .....++.++.++|||||.++-
T Consensus       118 ~~~e~~~~~~~~a~~r~LkpgG~iiP  143 (328)
T d1g6q1_         118 LLYESMMDTVLYARDHYLVEGGLIFP  143 (328)
T ss_dssp             BSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             eccchhHHHHHHHHHhccCCCeEEEe
Confidence                2577889999999999998863

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.29  E-value=1.1e-12  Score=112.97  Aligned_cols=110  Identities=14%  Similarity=0.172  Sum_probs=81.9

Q ss_pred             HHHHhhccCCCCEEEEEcCcccHHHHHhc------cceEEEeccC----------------CCCcEEEccCCCCCCCCCC
Q 022592          132 IVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSS  189 (294)
Q Consensus       132 ~~~~l~~~~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~----------------~~~~~~~~d~~~lp~~~~~  189 (294)
                      ++..+.-. |+.+|||+|||+|.++..++      ..|+++|.++                .++.+..+|+.+. +++++
T Consensus        77 Ii~~l~i~-pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~-~~~~~  154 (250)
T d1yb2a1          77 IIMRCGLR-PGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF-ISDQM  154 (250)
T ss_dssp             ----CCCC-TTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC-CCSCC
T ss_pred             HHHHcCCC-CcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecc-cccce
Confidence            45555444 88999999999999888776      3799999987                3678888998775 45788


Q ss_pred             ccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEE
Q 022592          190 VDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVS  255 (294)
Q Consensus       190 fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~  255 (294)
                      ||+|++.    -.++..++.++.++|||||+|++....  ..      ....+.+.|++.||..++
T Consensus       155 fD~V~ld----~p~p~~~l~~~~~~LKpGG~lv~~~P~--i~------Qv~~~~~~l~~~gf~~i~  208 (250)
T d1yb2a1         155 YDAVIAD----IPDPWNHVQKIASMMKPGSVATFYLPN--FD------QSEKTVLSLSASGMHHLE  208 (250)
T ss_dssp             EEEEEEC----CSCGGGSHHHHHHTEEEEEEEEEEESS--HH------HHHHHHHHSGGGTEEEEE
T ss_pred             eeeeeec----CCchHHHHHHHHHhcCCCceEEEEeCC--cC------hHHHHHHHHHHCCCceeE
Confidence            9999863    347788999999999999999986421  10      134566777889997654

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.27  E-value=1.4e-11  Score=102.95  Aligned_cols=106  Identities=11%  Similarity=0.164  Sum_probs=80.4

Q ss_pred             CCEEEEEcCcccHHHHHhc-----cceEEEeccC---------------CCCcEEEccCCCCC--CCCCCccEEEEcccc
Q 022592          142 SLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSNTP--LNSSSVDVAVFCLSL  199 (294)
Q Consensus       142 ~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~---------------~~~~~~~~d~~~lp--~~~~~fD~Vi~~~~l  199 (294)
                      ...|||||||+|.++..++     ..++|+|++.               .|+.++.+|+..+.  ++++++|.|++.+..
T Consensus        32 ~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fPd  111 (204)
T d1yzha1          32 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFSD  111 (204)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESCC
T ss_pred             CCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhcccccc
Confidence            3489999999999998887     3789999987               57899999998865  778999999987776


Q ss_pred             cCCC---------HHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEE
Q 022592          200 MGIN---------FPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVS  255 (294)
Q Consensus       200 ~~~~---------~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~  255 (294)
                      .|..         ...+++.+.++|+|||.|++..-...+        .+.+...+...|+....
T Consensus       112 Pw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~TD~~~Y--------~~~~le~~~~~~~~~~~  168 (204)
T d1yzha1         112 PWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGL--------FEYSLVSFSQYGMKLNG  168 (204)
T ss_dssp             CCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHH--------HHHHHHHHHHHTCEEEE
T ss_pred             cccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEECCccH--------HHHHHHHHHHCCccccc
Confidence            5532         268999999999999999886411111        13445566667775543

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=4.6e-12  Score=107.52  Aligned_cols=91  Identities=19%  Similarity=0.195  Sum_probs=73.1

Q ss_pred             HHHHHHhhc-cCCCCEEEEEcCcccHHHHHhc------cceEEEeccC--------------------CCCcEEEccCCC
Q 022592          130 NIIVKWLKD-HSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS--------------------NDPSVIACDMSN  182 (294)
Q Consensus       130 ~~~~~~l~~-~~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~--------------------~~~~~~~~d~~~  182 (294)
                      ..+++.|.. ..++.+|||||||+|+.+..++      ..|+++|+++                    .++.+..+|...
T Consensus        64 a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~  143 (224)
T d1i1na_          64 AYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRM  143 (224)
T ss_dssp             HHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGG
T ss_pred             HHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeeccc
Confidence            456777643 3478899999999999876665      3899999987                    256778899988


Q ss_pred             CCCCCCCccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEe
Q 022592          183 TPLNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAE  225 (294)
Q Consensus       183 lp~~~~~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e  225 (294)
                      .+.++++||+|++..++++..     .++.+.|||||+|++..
T Consensus       144 ~~~~~~~fD~I~~~~~~~~ip-----~~l~~~LkpGG~LV~pv  181 (224)
T d1i1na_         144 GYAEEAPYDAIHVGAAAPVVP-----QALIDQLKPGGRLILPV  181 (224)
T ss_dssp             CCGGGCCEEEEEECSBBSSCC-----HHHHHTEEEEEEEEEEE
T ss_pred             ccchhhhhhhhhhhcchhhcC-----HHHHhhcCCCcEEEEEE
Confidence            887888999999999988753     35788999999999853

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=2.1e-12  Score=115.82  Aligned_cols=95  Identities=13%  Similarity=0.168  Sum_probs=74.4

Q ss_pred             HHHHHHHhhccCCCCEEEEEcCcccHHHHHhc-----cceEEEeccC------------------------CCCcEEEcc
Q 022592          129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS------------------------NDPSVIACD  179 (294)
Q Consensus       129 ~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~------------------------~~~~~~~~d  179 (294)
                      +..+++.+... ++.+|||||||+|.++..++     ..++|+|+|+                        .++.++++|
T Consensus       140 ~~~~~~~~~l~-~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd  218 (328)
T d1nw3a_         140 VAQMIDEIKMT-DDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGD  218 (328)
T ss_dssp             HHHHHHHSCCC-TTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECC
T ss_pred             HHHHHHHcCCC-CCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECc
Confidence            44566665544 77899999999999888775     3799999997                        257899999


Q ss_pred             CCCCCCCCCCc--cEEEEcccccC-CCHHHHHHHHHHhcCcCcEEEEEe
Q 022592          180 MSNTPLNSSSV--DVAVFCLSLMG-INFPNYLQEAQRVLKPSGWLLIAE  225 (294)
Q Consensus       180 ~~~lp~~~~~f--D~Vi~~~~l~~-~~~~~~l~el~r~LkpgG~l~i~e  225 (294)
                      +.++++.+..+  |+|++. .+.| .+....+.++.++|||||.+++.+
T Consensus       219 ~~~~~~~~~~~~advi~~~-~~~f~~~~~~~l~e~~r~LKpGg~iv~~~  266 (328)
T d1nw3a_         219 FLSEEWRERIANTSVIFVN-NFAFGPEVDHQLKERFANMKEGGRIVSSK  266 (328)
T ss_dssp             TTSHHHHHHHHHCSEEEEC-CTTTCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred             ccccccccccCcceEEEEc-ceecchHHHHHHHHHHHhCCCCcEEEEec
Confidence            99988776555  555554 4445 478899999999999999998864

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.25  E-value=1.4e-11  Score=107.11  Aligned_cols=112  Identities=19%  Similarity=0.249  Sum_probs=82.2

Q ss_pred             HHHHHHhhccCCCCEEEEEcCcccHHHHHhc------cceEEEeccC----------------CCCcEEEccCCCCCCCC
Q 022592          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----------------NDPSVIACDMSNTPLNS  187 (294)
Q Consensus       130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~----------------~~~~~~~~d~~~lp~~~  187 (294)
                      ..++..+... |+.+|||+|||+|.++..++      .+|+++|+++                .++.+...|+.. .+..
T Consensus        93 ~~Ii~~l~i~-pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~-~~~~  170 (266)
T d1o54a_          93 SFIAMMLDVK-EGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISE-GFDE  170 (266)
T ss_dssp             HHHHHHTTCC-TTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGG-CCSC
T ss_pred             HHHHHhhCCC-CCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccccc-cccc
Confidence            3456666555 88999999999999888776      3799999997                234455556533 3456


Q ss_pred             CCccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEE
Q 022592          188 SSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVS  255 (294)
Q Consensus       188 ~~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~  255 (294)
                      ..||.|+.    +-.++..++.++.++|||||.|++....-        -..+.+.+.|++.||..++
T Consensus       171 ~~~D~V~~----d~p~p~~~l~~~~~~LKpGG~lv~~~P~~--------~Qv~~~~~~l~~~gF~~i~  226 (266)
T d1o54a_         171 KDVDALFL----DVPDPWNYIDKCWEALKGGGRFATVCPTT--------NQVQETLKKLQELPFIRIE  226 (266)
T ss_dssp             CSEEEEEE----CCSCGGGTHHHHHHHEEEEEEEEEEESSH--------HHHHHHHHHHHHSSEEEEE
T ss_pred             cceeeeEe----cCCCHHHHHHHHHhhcCCCCEEEEEeCcc--------cHHHHHHHHHHHCCceeEE
Confidence            77888764    22588999999999999999999864211        0235667788999997666

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.24  E-value=8.6e-12  Score=111.05  Aligned_cols=83  Identities=19%  Similarity=0.242  Sum_probs=71.1

Q ss_pred             CCCEEEEEcCcccHHHHHhc----cceEEEeccC---------------CCCcEEEccCCCCCCCCCCccEEEEcccccC
Q 022592          141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMG  201 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~---------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~  201 (294)
                      ++.+|||||||+|.++..++    .+|+|+|.|+               .++.++.+|+.+++++.++||+|++....++
T Consensus        33 ~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~~~  112 (316)
T d1oria_          33 KDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYC  112 (316)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBBT
T ss_pred             CcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHHhhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeeeeee
Confidence            56799999999999887776    3799999987               3578999999999999999999998766654


Q ss_pred             ----CCHHHHHHHHHHhcCcCcEEEE
Q 022592          202 ----INFPNYLQEAQRVLKPSGWLLI  223 (294)
Q Consensus       202 ----~~~~~~l~el~r~LkpgG~l~i  223 (294)
                          .....++..+.++|+|||.++-
T Consensus       113 l~~e~~~~~~l~~~~r~Lkp~G~iiP  138 (316)
T d1oria_         113 LFYESMLNTVLHARDKWLAPDGLIFP  138 (316)
T ss_dssp             BTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             eccHHHHHHHHHHHHhcCCCCeEEEe
Confidence                2578899999999999999874

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=1.4e-11  Score=109.30  Aligned_cols=83  Identities=20%  Similarity=0.248  Sum_probs=70.3

Q ss_pred             CCCEEEEEcCcccHHHHHhc----cceEEEeccC---------------CCCcEEEccCCCCCCCCCCccEEEEcccccC
Q 022592          141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMG  201 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~---------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~  201 (294)
                      ++.+|||||||+|.++..++    .+|+|+|.|+               .++.++.+|+.+++++.++||+|++....++
T Consensus        35 ~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse~~~~~  114 (311)
T d2fyta1          35 KDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGYF  114 (311)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCCBTT
T ss_pred             CcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcCccccceEEEEeeeeee
Confidence            67799999999999988776    3799999998               4678999999999999899999999766665


Q ss_pred             C----CHHHHHHHHHHhcCcCcEEEE
Q 022592          202 I----NFPNYLQEAQRVLKPSGWLLI  223 (294)
Q Consensus       202 ~----~~~~~l~el~r~LkpgG~l~i  223 (294)
                      .    .+..++....++|+|||.++-
T Consensus       115 ~~~e~~~~~~~~a~~~~Lkp~G~iip  140 (311)
T d2fyta1         115 LLFESMLDSVLYAKNKYLAKGGSVYP  140 (311)
T ss_dssp             BTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred             cccccccHHHHHHHHhcCCCCcEEec
Confidence            2    356778888899999999874

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.22  E-value=1.2e-11  Score=104.73  Aligned_cols=89  Identities=17%  Similarity=0.179  Sum_probs=71.5

Q ss_pred             HHHHHHhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccC-------------CCCcEEEccCCCCCCCCCCccEE
Q 022592          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS-------------NDPSVIACDMSNTPLNSSSVDVA  193 (294)
Q Consensus       130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~-------------~~~~~~~~d~~~lp~~~~~fD~V  193 (294)
                      ..+++.+... ++.+|||||||+|+++..++   .+|+++|+++             .++.++.+|........++||.|
T Consensus        60 a~ml~~L~l~-~g~~VLdIG~GsGy~ta~La~l~~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g~~~~~pfD~I  138 (224)
T d1vbfa_          60 IFMLDELDLH-KGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDRV  138 (224)
T ss_dssp             HHHHHHTTCC-TTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEEE
T ss_pred             HHHHHHhhhc-ccceEEEecCCCCHHHHHHHHHhcccccccccHHHHHHHHHHHhcccccccccCchhhcchhhhhHHHH
Confidence            3456666555 78899999999999887776   6899999887             57789999987755567889999


Q ss_pred             EEcccccCCCHHHHHHHHHHhcCcCcEEEEE
Q 022592          194 VFCLSLMGINFPNYLQEAQRVLKPSGWLLIA  224 (294)
Q Consensus       194 i~~~~l~~~~~~~~l~el~r~LkpgG~l~i~  224 (294)
                      ++..++++..     ..+.+.|+|||+|++.
T Consensus       139 iv~~a~~~ip-----~~l~~qLk~GGrLV~p  164 (224)
T d1vbfa_         139 VVWATAPTLL-----CKPYEQLKEGGIMILP  164 (224)
T ss_dssp             EESSBBSSCC-----HHHHHTEEEEEEEEEE
T ss_pred             Hhhcchhhhh-----HHHHHhcCCCCEEEEE
Confidence            9998887653     3467889999999884

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.21  E-value=5.3e-11  Score=103.62  Aligned_cols=110  Identities=16%  Similarity=0.311  Sum_probs=83.3

Q ss_pred             CCCEEEEEcCcccHHHHHhc-----cceEEEeccC---------------CCCcEEEccCCCCCCCCCCccEEEEccccc
Q 022592          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLM  200 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~---------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~  200 (294)
                      .+.+|||+|||+|..+..++     ..|+++|+|+               .++.++.+|+.. ++++.+||+|+++....
T Consensus       108 ~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPYi  186 (274)
T d2b3ta1         108 QPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFS-ALAGQQFAMIVSNPPYI  186 (274)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTG-GGTTCCEEEEEECCCCB
T ss_pred             cccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcccceeeeccccc-ccCCCceeEEEecchhh
Confidence            34689999999999988886     3899999998               368899999876 45567899999975542


Q ss_pred             CC--------------------------CHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEE
Q 022592          201 GI--------------------------NFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPV  254 (294)
Q Consensus       201 ~~--------------------------~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~  254 (294)
                      ..                          ....++.++.++|+|||.+++ |+..        -..+.+.+++++.||..+
T Consensus       187 ~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~l-Eig~--------~q~~~v~~~l~~~gf~~i  257 (274)
T d2b3ta1         187 DEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLL-EHGW--------QQGEAVRQAFILAGYHDV  257 (274)
T ss_dssp             CTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEE-ECCS--------SCHHHHHHHHHHTTCTTC
T ss_pred             hhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEE-EECc--------hHHHHHHHHHHHCCCCeE
Confidence            10                          024688899999999999988 4322        134789999999999754


Q ss_pred             E--EeccC
Q 022592          255 S--KDFSN  260 (294)
Q Consensus       255 ~--~~~~~  260 (294)
                      +  .+...
T Consensus       258 ~~~kDl~g  265 (274)
T d2b3ta1         258 ETCRDYGD  265 (274)
T ss_dssp             CEEECTTS
T ss_pred             EEEECCCC
Confidence            3  44433

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=8.9e-11  Score=104.59  Aligned_cols=111  Identities=17%  Similarity=0.221  Sum_probs=79.5

Q ss_pred             HHHHHHhhccCCCCEEEEEcCcccHHHHHhc------cceEEEeccC--------------------------CCCcEEE
Q 022592          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS--------------------------NDPSVIA  177 (294)
Q Consensus       130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~--------------------------~~~~~~~  177 (294)
                      ..++..+.-. |+.+|||+|||+|.++..|+      ++|+++|+++                          .++.+..
T Consensus        88 ~~Il~~l~i~-pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~  166 (324)
T d2b25a1          88 NMILSMMDIN-PGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIH  166 (324)
T ss_dssp             HHHHHHHTCC-TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEE
T ss_pred             HHHHHHhCCC-CCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEe
Confidence            4466666655 88999999999999988886      3799999986                          3577888


Q ss_pred             ccCCCCC--CCCCCccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHH---HHHHHH--CC
Q 022592          178 CDMSNTP--LNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKF---SKAVCD--LG  250 (294)
Q Consensus       178 ~d~~~lp--~~~~~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~---~~~l~~--~G  250 (294)
                      .|+....  +++..||.|+..    -.++..++.++.++|||||.|++..           .+.+++   .+.|+.  .|
T Consensus       167 ~di~~~~~~~~~~~fD~V~LD----~p~P~~~l~~~~~~LKpGG~lv~~~-----------P~i~Qv~~~~~~l~~~~~~  231 (324)
T d2b25a1         167 KDISGATEDIKSLTFDAVALD----MLNPHVTLPVFYPHLKHGGVCAVYV-----------VNITQVIELLDGIRTCELA  231 (324)
T ss_dssp             SCTTCCC-------EEEEEEC----SSSTTTTHHHHGGGEEEEEEEEEEE-----------SSHHHHHHHHHHHHHHTCC
T ss_pred             cchhhcccccCCCCcceEeec----CcCHHHHHHHHHHhccCCCEEEEEe-----------CCHHHHHHHHHHHHHcCCC
Confidence            8987654  456789998852    2466789999999999999999853           133444   444553  46


Q ss_pred             CeEEEE
Q 022592          251 FAPVSK  256 (294)
Q Consensus       251 f~~~~~  256 (294)
                      |..+++
T Consensus       232 f~~i~~  237 (324)
T d2b25a1         232 LSCEKI  237 (324)
T ss_dssp             EEEEEE
T ss_pred             ceeeEE
Confidence            876663

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.01  E-value=3.3e-10  Score=95.13  Aligned_cols=90  Identities=22%  Similarity=0.271  Sum_probs=72.3

Q ss_pred             HHHHHHHhhccCCCCEEEEEcCcccHHHHHhc----cceEEEeccC---------------CCCcEEEccCCCCCCCCCC
Q 022592          129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSS  189 (294)
Q Consensus       129 ~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~---------------~~~~~~~~d~~~lp~~~~~  189 (294)
                      +..+++.+... ++.+|||||||+|+.+..++    ..|+++|..+               .++.++.+|........++
T Consensus        67 ~a~ml~~L~l~-~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~~~p  145 (215)
T d1jg1a_          67 VAIMLEIANLK-PGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAP  145 (215)
T ss_dssp             HHHHHHHHTCC-TTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCC
T ss_pred             HHHHHHhhccC-ccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCcccCc
Confidence            35567777655 78899999999999887765    3799999886               5788999999886666889


Q ss_pred             ccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEE
Q 022592          190 VDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIA  224 (294)
Q Consensus       190 fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~  224 (294)
                      ||.|++..++.+.. .    .+...|+|||+|++.
T Consensus       146 fD~Iiv~~a~~~ip-~----~l~~qL~~gGrLv~p  175 (215)
T d1jg1a_         146 YDVIIVTAGAPKIP-E----PLIEQLKIGGKLIIP  175 (215)
T ss_dssp             EEEEEECSBBSSCC-H----HHHHTEEEEEEEEEE
T ss_pred             ceeEEeecccccCC-H----HHHHhcCCCCEEEEE
Confidence            99999998887543 2    256679999999885

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.01  E-value=3.2e-10  Score=95.79  Aligned_cols=90  Identities=13%  Similarity=0.208  Sum_probs=71.8

Q ss_pred             HHHHHHhh-ccCCCCEEEEEcCcccHHHHHhcc-----------ceEEEeccC--------------------CCCcEEE
Q 022592          130 NIIVKWLK-DHSPSLVIADFGCGDARLAKSVKN-----------KVFSFDLVS--------------------NDPSVIA  177 (294)
Q Consensus       130 ~~~~~~l~-~~~~~~~VLDiGcG~G~~~~~l~~-----------~v~gvD~s~--------------------~~~~~~~  177 (294)
                      ..+++.|. ...++.+|||||||+|+++..++.           +|+++|..+                    .++.+..
T Consensus        68 a~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~  147 (223)
T d1r18a_          68 AFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVE  147 (223)
T ss_dssp             HHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred             HHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEe
Confidence            45677764 334788999999999998877751           699999876                    3678899


Q ss_pred             ccCCCCCCCCCCccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEE
Q 022592          178 CDMSNTPLNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIA  224 (294)
Q Consensus       178 ~d~~~lp~~~~~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~  224 (294)
                      +|......+.++||.|++..++.+..     ..+.+.|+|||+|++.
T Consensus       148 ~d~~~~~~~~~~fD~Iiv~~a~~~~p-----~~l~~~Lk~gG~lV~p  189 (223)
T d1r18a_         148 GDGRKGYPPNAPYNAIHVGAAAPDTP-----TELINQLASGGRLIVP  189 (223)
T ss_dssp             SCGGGCCGGGCSEEEEEECSCBSSCC-----HHHHHTEEEEEEEEEE
T ss_pred             cccccccccccceeeEEEEeechhch-----HHHHHhcCCCcEEEEE
Confidence            99988766778999999999987654     2467899999999885

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.94  E-value=4.2e-10  Score=102.87  Aligned_cols=96  Identities=8%  Similarity=0.095  Sum_probs=65.9

Q ss_pred             HHHHHHHhhccCCCCEEEEEcCcccHHHHHhc-----cceEEEeccCCCC------------------------cE-EEc
Q 022592          129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVSNDP------------------------SV-IAC  178 (294)
Q Consensus       129 ~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~~~~------------------------~~-~~~  178 (294)
                      +..+++.+... ++.+|||||||+|..+..++     ..++|+|+|+..+                        .+ ..+
T Consensus       205 i~~Il~~l~Lk-pgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~  283 (406)
T d1u2za_         205 LSDVYQQCQLK-KGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKK  283 (406)
T ss_dssp             HHHHHHHTTCC-TTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESS
T ss_pred             HHHHHHHhCCC-CCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeee
Confidence            44456655544 78899999999999888776     3799999997211                        11 223


Q ss_pred             cCCCCCCC---CCCccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEe
Q 022592          179 DMSNTPLN---SSSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAE  225 (294)
Q Consensus       179 d~~~lp~~---~~~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e  225 (294)
                      +....+..   -..+|+|++...++..+....|.++.+.|||||.|++.+
T Consensus       284 ~f~~~~~~d~~~~~adVV~inn~~f~~~l~~~L~ei~r~LKPGGrIVs~~  333 (406)
T d1u2za_         284 SFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISLK  333 (406)
T ss_dssp             CSTTCHHHHHHGGGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred             chhhccccccccccceEEEEecccCchHHHHHHHHHHHhcCCCcEEEEec
Confidence            33322211   134678776554433578899999999999999998865

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.94  E-value=3.8e-09  Score=91.09  Aligned_cols=110  Identities=13%  Similarity=0.156  Sum_probs=82.5

Q ss_pred             CCCCEEEEEcCcccHHHHHhc----cceEEEeccC----------------CCCcEEEccCCCCCCCCCCccEEEEcccc
Q 022592          140 SPSLVIADFGCGDARLAKSVK----NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSVDVAVFCLSL  199 (294)
Q Consensus       140 ~~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~----------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l  199 (294)
                      .++.+|||+|||+|.++..++    .+|+++|+++                +.+.++.+|+..++. .+.||.|++... 
T Consensus       106 ~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~-~~~~D~Ii~~~p-  183 (260)
T d2frna1         106 KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGYV-  183 (260)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECCC-
T ss_pred             CCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhcc-CCCCCEEEECCC-
Confidence            367899999999999988776    4899999998                357888999988764 577999987533 


Q ss_pred             cCCCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEE
Q 022592          200 MGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVS  255 (294)
Q Consensus       200 ~~~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~  255 (294)
                        .....++.++.++|+|||++.+.++......  .....+.+..+....||.+..
T Consensus       184 --~~~~~~l~~a~~~l~~gG~lh~~~~~~~~~~--~~~~~e~~~~~~~~~g~~v~~  235 (260)
T d2frna1         184 --VRTHEFIPKALSIAKDGAIIHYHNTVPEKLM--PREPFETFKRITKEYGYDVEK  235 (260)
T ss_dssp             --SSGGGGHHHHHHHEEEEEEEEEEEEEEGGGT--TTTTHHHHHHHHHHTTCEEEE
T ss_pred             --CchHHHHHHHHhhcCCCCEEEEEeccccccc--hhhHHHHHHHHHHHcCCceEE
Confidence              1335678889999999999988764322111  112446777888899998754

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.89  E-value=2.4e-09  Score=88.32  Aligned_cols=84  Identities=14%  Similarity=0.157  Sum_probs=60.7

Q ss_pred             CCCEEEEEcCcccHH----HHHhcc---------ceEEEeccCC------------------------------------
Q 022592          141 PSLVIADFGCGDARL----AKSVKN---------KVFSFDLVSN------------------------------------  171 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~----~~~l~~---------~v~gvD~s~~------------------------------------  171 (294)
                      +..+||++|||+|.-    +..+..         +++|+|+++.                                    
T Consensus        24 ~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~~  103 (193)
T d1af7a2          24 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  103 (193)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCccc
Confidence            456999999999973    332321         5899999971                                    


Q ss_pred             ----------CCcEEEccCCC-CCCCCCCccEEEEcccccCCCH---HHHHHHHHHhcCcCcEEEEE
Q 022592          172 ----------DPSVIACDMSN-TPLNSSSVDVAVFCLSLMGINF---PNYLQEAQRVLKPSGWLLIA  224 (294)
Q Consensus       172 ----------~~~~~~~d~~~-lp~~~~~fD~Vi~~~~l~~~~~---~~~l~el~r~LkpgG~l~i~  224 (294)
                                .+.+...+... .+.+.+.||+|+|..+|.+++.   ..+++.++++|+|||+|++.
T Consensus       104 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG  170 (193)
T d1af7a2         104 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG  170 (193)
T ss_dssp             EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred             eeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence                      11223333332 2234578999999999999754   48999999999999999885

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=98.80  E-value=4.2e-09  Score=93.43  Aligned_cols=106  Identities=14%  Similarity=0.085  Sum_probs=77.4

Q ss_pred             CCCEEEEEcCcccHHHHHhc---cceEEEeccC---------------CCCcEEEccCCC----CCCCCCCccEEEEccc
Q 022592          141 PSLVIADFGCGDARLAKSVK---NKVFSFDLVS---------------NDPSVIACDMSN----TPLNSSSVDVAVFCLS  198 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~---------------~~~~~~~~d~~~----lp~~~~~fD~Vi~~~~  198 (294)
                      .+.+|||++||+|.++..++   ..|+++|+|+               .++.++.+|+.+    ++...++||+|++...
T Consensus       145 ~g~rVLDl~~gtG~~s~~~a~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~DpP  224 (318)
T d1wxxa2         145 RGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDPP  224 (318)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECCC
T ss_pred             CCCeeeccCCCCcHHHHHHHhcCCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEcCC
Confidence            67799999999999998886   4899999998               356788888765    3344678999998654


Q ss_pred             ccCC----------CHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHH----HHHCCCeE
Q 022592          199 LMGI----------NFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKA----VCDLGFAP  253 (294)
Q Consensus       199 l~~~----------~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~----l~~~Gf~~  253 (294)
                      -...          +...++..+.++|+|||.|+++.....       ++.+.+..+    +..+|-.+
T Consensus       225 ~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~~-------~~~~~f~~~v~~a~~~a~~~~  286 (318)
T d1wxxa2         225 AFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHH-------MTEPLFYAMVAEAAQDAHRLL  286 (318)
T ss_dssp             CSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTT-------SCHHHHHHHHHHHHHHTTCCE
T ss_pred             ccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcc-------cCHHHHHHHHHHHHHHcCCCE
Confidence            3321          234678899999999999999764432       345555544    45666544

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.77  E-value=1.2e-09  Score=86.54  Aligned_cols=94  Identities=9%  Similarity=0.035  Sum_probs=68.2

Q ss_pred             HHHHHhhccCCCCEEEEEcCcccHHHHHhc----cceEEEeccC----------------CCCcEEEccCCC-CCCCCCC
Q 022592          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS----------------NDPSVIACDMSN-TPLNSSS  189 (294)
Q Consensus       131 ~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~----------------~~~~~~~~d~~~-lp~~~~~  189 (294)
                      .+...|.....+.+|||+|||+|.++..++    .+|+++|.++                .++.++.+|+.. +....++
T Consensus         4 ~~fn~l~~~~~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~   83 (152)
T d2esra1           4 AIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGR   83 (152)
T ss_dssp             HHHHHHCSCCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSC
T ss_pred             HHHHHHHhhCCCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccc
Confidence            355666655567899999999999987664    4899999986                346788888765 3455678


Q ss_pred             ccEEEEcccccCCCHHHHHHHHH--HhcCcCcEEEEE
Q 022592          190 VDVAVFCLSLMGINFPNYLQEAQ--RVLKPSGWLLIA  224 (294)
Q Consensus       190 fD~Vi~~~~l~~~~~~~~l~el~--r~LkpgG~l~i~  224 (294)
                      ||+|++............+..+.  ++|+|||.+++-
T Consensus        84 fDiIf~DPPy~~~~~~~~l~~i~~~~~L~~~g~iiiE  120 (152)
T d2esra1          84 FDLVFLDPPYAKETIVATIEALAAKNLLSEQVMVVCE  120 (152)
T ss_dssp             EEEEEECCSSHHHHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred             cceeEechhhccchHHHHHHHHHHCCCcCCCeEEEEE
Confidence            99999875433223345555554  579999998874

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.73  E-value=4.6e-09  Score=93.44  Aligned_cols=101  Identities=14%  Similarity=0.131  Sum_probs=74.4

Q ss_pred             CCCCEEEEEcCcccHHHHHhc----cceEEEeccC----------------CCCcEEEccCCC----CCCCCCCccEEEE
Q 022592          140 SPSLVIADFGCGDARLAKSVK----NKVFSFDLVS----------------NDPSVIACDMSN----TPLNSSSVDVAVF  195 (294)
Q Consensus       140 ~~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~----------------~~~~~~~~d~~~----lp~~~~~fD~Vi~  195 (294)
                      .++.+|||+|||+|.++..++    ..|+++|+|+                .+++++.+|+.+    ++....+||+|++
T Consensus       144 ~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi~  223 (324)
T d2as0a2         144 QPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL  223 (324)
T ss_dssp             CTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCchhc
Confidence            367899999999999998775    3899999998                255788888764    2334678999998


Q ss_pred             cccccCC----------CHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHH
Q 022592          196 CLSLMGI----------NFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVC  247 (294)
Q Consensus       196 ~~~l~~~----------~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~  247 (294)
                      .......          +...++..+.++|+|||.|+++.....       .+.+.+.+++.
T Consensus       224 DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~~-------~~~~~f~~~v~  278 (324)
T d2as0a2         224 DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQH-------VDLQMFKDMII  278 (324)
T ss_dssp             CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTT-------SCHHHHHHHHH
T ss_pred             CCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCcc-------CCHHHHHHHHH
Confidence            6554321          235678889999999999999864432       35566655543

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.67  E-value=6.6e-09  Score=85.51  Aligned_cols=98  Identities=19%  Similarity=0.385  Sum_probs=76.7

Q ss_pred             HHHHHHHhhccCCCCEEEEEcCcccHHHHHhc-----cceEEEeccC--------------CCCcEEEccCCCCC-----
Q 022592          129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS--------------NDPSVIACDMSNTP-----  184 (294)
Q Consensus       129 ~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~--------------~~~~~~~~d~~~lp-----  184 (294)
                      ++.+++++... ++..+||++||+|.++..++     ..|+|+|.++              .++.++.+++.++.     
T Consensus        12 l~evi~~l~~~-~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~~~   90 (192)
T d1m6ya2          12 VREVIEFLKPE-DEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKT   90 (192)
T ss_dssp             HHHHHHHHCCC-TTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHH
T ss_pred             HHHHHHhhCCC-CCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHHHH
Confidence            45678888765 67899999999999988776     4899999987              36778888876642     


Q ss_pred             CCCCCccEEEEcccccC----------CCHHHHHHHHHHhcCcCcEEEEEeec
Q 022592          185 LNSSSVDVAVFCLSLMG----------INFPNYLQEAQRVLKPSGWLLIAEVK  227 (294)
Q Consensus       185 ~~~~~fD~Vi~~~~l~~----------~~~~~~l~el~r~LkpgG~l~i~e~~  227 (294)
                      +..++||.|+....+.-          ......+..+.++|+|||.++++.++
T Consensus        91 ~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~  143 (192)
T d1m6ya2          91 LGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFH  143 (192)
T ss_dssp             TTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESS
T ss_pred             cCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeeccc
Confidence            44678999988766521          13458899999999999999998754

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.60  E-value=9.4e-08  Score=78.96  Aligned_cols=102  Identities=18%  Similarity=0.194  Sum_probs=66.2

Q ss_pred             CCCEEEEEcCcccHHHHHhc----cceEEEeccC--------------CCCcEEEccCCCCCCCCCCccEEEEcccccCC
Q 022592          141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVS--------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGI  202 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~--------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~  202 (294)
                      .+.+|||+|||+|.++..++    ..|+|+|+++              ....++.+|+..+   ++.||+|+++..+...
T Consensus        46 ~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~~---~~~fD~Vi~nPP~~~~  122 (201)
T d1wy7a1          46 EGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEF---NSRVDIVIMNPPFGSQ  122 (201)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGC---CCCCSEEEECCCCSSS
T ss_pred             CCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCCCceEEECchhhh---CCcCcEEEEcCccccc
Confidence            67799999999999887664    3899999997              2456777787665   4679999998776542


Q ss_pred             C---HHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEE
Q 022592          203 N---FPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVS  255 (294)
Q Consensus       203 ~---~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~  255 (294)
                      .   ...++..   .+.+++.++........       ...-+..+....|+.+..
T Consensus       123 ~~~~d~~~l~~---~~~~~~~v~~ih~~~~~-------~~~~i~~~~~~~g~~i~~  168 (201)
T d1wy7a1         123 RKHADRPFLLK---AFEISDVVYSIHLAKPE-------VRRFIEKFSWEHGFVVTH  168 (201)
T ss_dssp             STTTTHHHHHH---HHHHCSEEEEEEECCHH-------HHHHHHHHHHHTTEEEEE
T ss_pred             cccccHHHHHH---HHhhcccchhcccchHH-------HHHHHHHHHhhcCceEEE
Confidence            1   1233333   33445555443221111       123455677888987765

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=98.58  E-value=1.2e-07  Score=77.21  Aligned_cols=93  Identities=8%  Similarity=0.087  Sum_probs=68.3

Q ss_pred             HHHHhhccCCCCEEEEEcCcccHHHHHhc----cceEEEeccC---------------CCCcEEEccCCC-CCCCCCCcc
Q 022592          132 IVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS---------------NDPSVIACDMSN-TPLNSSSVD  191 (294)
Q Consensus       132 ~~~~l~~~~~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~---------------~~~~~~~~d~~~-lp~~~~~fD  191 (294)
                      +...|.....+.+|||++||+|.++..++    ..|++||.+.               .+..++.+|+.. +.....+||
T Consensus        34 lfn~l~~~~~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~fD  113 (183)
T d2fpoa1          34 LFNWLAPVIVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHN  113 (183)
T ss_dssp             HHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEE
T ss_pred             HHhhhhcccchhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhccccceeeeeecccccccccccccC
Confidence            34444433366799999999999998665    3899999987               356677777654 334467899


Q ss_pred             EEEEcccccCCCHHHHHHHHHH--hcCcCcEEEEE
Q 022592          192 VAVFCLSLMGINFPNYLQEAQR--VLKPSGWLLIA  224 (294)
Q Consensus       192 ~Vi~~~~l~~~~~~~~l~el~r--~LkpgG~l~i~  224 (294)
                      +|++............+..+.+  +|+++|.+++-
T Consensus       114 lIf~DPPY~~~~~~~~l~~l~~~~~L~~~~iIiiE  148 (183)
T d2fpoa1         114 IVFVDPPFRRGLLEETINLLEDNGWLADEALIYVE  148 (183)
T ss_dssp             EEEECCSSSTTTHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred             EEEEcCccccchHHHHHHHHHHCCCCCCCeEEEEE
Confidence            9999877555566677777765  69999988873

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=98.58  E-value=8.5e-08  Score=82.80  Aligned_cols=126  Identities=18%  Similarity=0.270  Sum_probs=80.2

Q ss_pred             HHHHhhccCCCCEEEEEcCcccHHHHHhc----cceEEEeccC----------------CCCcEEEccCCCC-CCCCCCc
Q 022592          132 IVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS----------------NDPSVIACDMSNT-PLNSSSV  190 (294)
Q Consensus       132 ~~~~l~~~~~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~----------------~~~~~~~~d~~~l-p~~~~~f  190 (294)
                      ++..+... ...+|||+|||+|..+..++    ..|+++|+|+                .++.+..+|.... +...+.|
T Consensus       102 ~~~~~~~~-~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~~~~f  180 (271)
T d1nv8a_         102 ALELIRKY-GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASI  180 (271)
T ss_dssp             HHHHHHHH-TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTC
T ss_pred             hhhhhccc-cccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccccccccCcc
Confidence            34444444 34589999999999887775    4899999998                2345667777653 3334789


Q ss_pred             cEEEEcccccC----------CCHH----------HHHHH-HHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHC
Q 022592          191 DVAVFCLSLMG----------INFP----------NYLQE-AQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDL  249 (294)
Q Consensus       191 D~Vi~~~~l~~----------~~~~----------~~l~e-l~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~  249 (294)
                      |+|+++...--          .+|.          .+++. +.++|+|||++++ |+...        ..+.+.+++.+.
T Consensus       181 DlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~-Eig~~--------Q~~~v~~l~~~~  251 (271)
T d1nv8a_         181 EMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLM-EIGED--------QVEELKKIVSDT  251 (271)
T ss_dssp             CEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEE-ECCTT--------CHHHHTTTSTTC
T ss_pred             cEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEE-EECHH--------HHHHHHHHHHhC
Confidence            99999855321          0111          22322 5678999998777 44321        347788888888


Q ss_pred             CCeEEEEeccCCeEEEEEEEEC
Q 022592          250 GFAPVSKDFSNKMFIMFYFKKK  271 (294)
Q Consensus       250 Gf~~~~~~~~~~~f~~i~~~k~  271 (294)
                      ||   ..+.. ..-.++.++|.
T Consensus       252 g~---~kDl~-g~~R~~~~~k~  269 (271)
T d1nv8a_         252 VF---LKDSA-GKYRFLLLNRR  269 (271)
T ss_dssp             EE---EECTT-SSEEEEEEECC
T ss_pred             CE---EeccC-CCcEEEEEEEc
Confidence            87   24443 34445555554

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.57  E-value=5.5e-08  Score=80.09  Aligned_cols=56  Identities=20%  Similarity=0.270  Sum_probs=46.9

Q ss_pred             CCCEEEEEcCcccHHHHHhc----cceEEEeccC----------CCCcEEEccCCCCCCCCCCccEEEEcccc
Q 022592          141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVS----------NDPSVIACDMSNTPLNSSSVDVAVFCLSL  199 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~----------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l  199 (294)
                      .+.+|||+|||+|.++..++    ..|+|+|+++          .++.++++|+..++   +.||+|+++..+
T Consensus        48 ~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~~~~~~~~~D~~~l~---~~fD~Vi~NPPf  117 (197)
T d1ne2a_          48 GGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCGGVNFMVADVSEIS---GKYDTWIMNPPF  117 (197)
T ss_dssp             BTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCTTSEEEECCGGGCC---CCEEEEEECCCC
T ss_pred             CCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHccccccEEEEehhhcC---CcceEEEeCccc
Confidence            67899999999999876554    4799999987          57889999998765   679999998665

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=98.56  E-value=1.1e-07  Score=83.96  Aligned_cols=102  Identities=10%  Similarity=0.199  Sum_probs=73.6

Q ss_pred             CCCCEEEEEcCcccHHHHHhc----cceEEEeccC-----------------CCCcEEEccCCCC----CCCCCCccEEE
Q 022592          140 SPSLVIADFGCGDARLAKSVK----NKVFSFDLVS-----------------NDPSVIACDMSNT----PLNSSSVDVAV  194 (294)
Q Consensus       140 ~~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~-----------------~~~~~~~~d~~~l----p~~~~~fD~Vi  194 (294)
                      .++.+|||++||+|.++..++    ..|+++|+|+                 .++.++.+|+...    ......||+|+
T Consensus       143 ~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~Ii  222 (317)
T d2b78a2         143 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIII  222 (317)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             hCCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCEEE
Confidence            367899999999999988765    3799999998                 2456888888542    22346899999


Q ss_pred             EcccccC------C----CHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHH
Q 022592          195 FCLSLMG------I----NFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCD  248 (294)
Q Consensus       195 ~~~~l~~------~----~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~  248 (294)
                      +...-..      .    +...++..+.++|+|||+|+++.-...       ++.+++..++.+
T Consensus       223 ~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~~-------~~~~~f~~~v~~  279 (317)
T d2b78a2         223 IDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAAN-------MTVSQFKKQIEK  279 (317)
T ss_dssp             ECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTT-------SCHHHHHHHHHH
T ss_pred             EcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcc-------CCHHHHHHHHHH
Confidence            8644221      1    345788899999999999999753322       356766655544

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.52  E-value=5.2e-07  Score=74.55  Aligned_cols=140  Identities=14%  Similarity=0.153  Sum_probs=88.8

Q ss_pred             cHHHHHHHHhhccCCCCEEEEEcCcccHHHHHhc------cceEEEeccCCCC------cEEEccCCCCCCCCCCccEEE
Q 022592          127 LPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVSNDP------SVIACDMSNTPLNSSSVDVAV  194 (294)
Q Consensus       127 ~~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~~~~------~~~~~d~~~lp~~~~~fD~Vi  194 (294)
                      ...+.+++.+... ++.+|||.|||+|.++..+.      ..++|+|+.+...      .++.+|..... ....||+|+
T Consensus         6 ~i~~~m~~l~~~~-~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~~~~~~~~~~~~~~~-~~~~fd~ii   83 (223)
T d2ih2a1           6 EVVDFMVSLAEAP-RGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPPWAEGILADFLLWE-PGEAFDLIL   83 (223)
T ss_dssp             HHHHHHHHHCCCC-TTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCTTEEEEESCGGGCC-CSSCEEEEE
T ss_pred             HHHHHHHHhcCCC-CcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhcccceeeeeehhccc-cccccceec
Confidence            3345566665544 67799999999999887765      3699999998433      45566665544 346799999


Q ss_pred             EcccccCC-----------------------------C-HHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHH
Q 022592          195 FCLSLMGI-----------------------------N-FPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSK  244 (294)
Q Consensus       195 ~~~~l~~~-----------------------------~-~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~  244 (294)
                      ++......                             + ...++..+.+.|+|||.+.++-..+.+...    ....+.+
T Consensus        84 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~~~l~~~----~~~~lR~  159 (223)
T d2ih2a1          84 GNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLE----DFALLRE  159 (223)
T ss_dssp             ECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTCG----GGHHHHH
T ss_pred             ccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEeeeeccCc----chHHHHH
Confidence            88775420                             0 235678899999999999888655544322    2256666


Q ss_pred             HHHHCCC-eEEEEec----cCCeEEEEEEEECC
Q 022592          245 AVCDLGF-APVSKDF----SNKMFIMFYFKKKE  272 (294)
Q Consensus       245 ~l~~~Gf-~~~~~~~----~~~~f~~i~~~k~~  272 (294)
                      .|.+.+. .+.....    ......+++++|..
T Consensus       160 ~l~~~~~i~i~~~~~~F~~~~v~t~i~~~~k~~  192 (223)
T d2ih2a1         160 FLAREGKTSVYYLGEVFPQKKVSAVVIRFQKSG  192 (223)
T ss_dssp             HHHHHSEEEEEEEESCSTTCCCCEEEEEEESSS
T ss_pred             HHHhcCCEEEEcchhcCCCCCCcEEEEEEEeCC
Confidence            6655443 2222111    22334566666643

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.47  E-value=3.1e-08  Score=82.77  Aligned_cols=94  Identities=11%  Similarity=0.135  Sum_probs=64.8

Q ss_pred             HHHHhhccCCCCEEEEEcCcccHHHHHhc------cceEEEeccC----------------CCCcEEEccCCCC-C----
Q 022592          132 IVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----------------NDPSVIACDMSNT-P----  184 (294)
Q Consensus       132 ~~~~l~~~~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~----------------~~~~~~~~d~~~l-p----  184 (294)
                      ++..+.......+|||||||+|..+..++      .+++++|+++                ++++++.+|..++ +    
T Consensus        47 lL~~lv~~~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~  126 (214)
T d2cl5a1          47 IMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKK  126 (214)
T ss_dssp             HHHHHHHHHCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHH
T ss_pred             HHHHHHHhhCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhh
Confidence            34333333244699999999999888776      3899999987                3578888887552 2    


Q ss_pred             -CCCCCccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEe
Q 022592          185 -LNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAE  225 (294)
Q Consensus       185 -~~~~~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e  225 (294)
                       +..++||+|+..+.-........+.+..++|+|||++++-+
T Consensus       127 ~~~~~~~D~ifiD~~~~~~~~~~~l~~~~~lLkpGGvIv~Dd  168 (214)
T d2cl5a1         127 KYDVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLADN  168 (214)
T ss_dssp             HSCCCCEEEEEECSCGGGHHHHHHHHHHTTCEEEEEEEEESC
T ss_pred             cccccccceeeecccccccccHHHHHHHhCccCCCcEEEEeC
Confidence             34568999987632111223345777889999999877643

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=98.46  E-value=3.2e-07  Score=74.38  Aligned_cols=115  Identities=17%  Similarity=0.255  Sum_probs=81.8

Q ss_pred             HHHHhhccCCCCEEEEEcCcccHHHHHhc------cceEEEeccC----CCCcEEEccCCCCC--------CCCCCccEE
Q 022592          132 IVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----NDPSVIACDMSNTP--------LNSSSVDVA  193 (294)
Q Consensus       132 ~~~~l~~~~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~----~~~~~~~~d~~~lp--------~~~~~fD~V  193 (294)
                      +.+......++..||||||++|.|+..+.      ..++++|+.+    .++.++.+|+.+..        .....+|+|
T Consensus        13 I~~k~~l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~~~i~~~~~~~~d~~~~~~~~~~~~~~~~~~~DlV   92 (180)
T d1ej0a_          13 IQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPIVGVDFLQGDFRDELVMKALLERVGDSKVQVV   92 (180)
T ss_dssp             HHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCCCTTEEEEESCTTSHHHHHHHHHHHTTCCEEEE
T ss_pred             HHHHhCccCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccccccCCceEeecccccchhhhhhhhhccCcceeEE
Confidence            33333333577899999999999999876      3799999988    56778888886632        235679999


Q ss_pred             EEcccccCC-C-----------HHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEE
Q 022592          194 VFCLSLMGI-N-----------FPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVS  255 (294)
Q Consensus       194 i~~~~l~~~-~-----------~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~  255 (294)
                      ++..+..-. +           ....+.-+.++|++||.+++=-+...        ....+...|.. -|+.+.
T Consensus        93 lSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g~--------~~~~l~~~l~~-~F~~V~  157 (180)
T d1ej0a_          93 MSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGE--------GFDEYLREIRS-LFTKVK  157 (180)
T ss_dssp             EECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESST--------THHHHHHHHHH-HEEEEE
T ss_pred             EecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecCc--------cHHHHHHHHHh-hcCEEE
Confidence            998776542 1           13567778899999999999655421        33567776665 365554

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=2.6e-07  Score=77.31  Aligned_cols=96  Identities=17%  Similarity=0.167  Sum_probs=72.4

Q ss_pred             HHHHHHhhccCCCCEEEEEcCcccHHHHHhc------cceEEEeccC----------------CCCcEEEccCCC-CC--
Q 022592          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----------------NDPSVIACDMSN-TP--  184 (294)
Q Consensus       130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~----------------~~~~~~~~d~~~-lp--  184 (294)
                      -.++..|.......+|||||||+|..+.+++      .+++.+|+++                +.+++..+|+.+ ++  
T Consensus        48 g~lL~~L~~~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~  127 (219)
T d2avda1          48 AQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDEL  127 (219)
T ss_dssp             HHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHH
T ss_pred             HHHHHHHHHccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhh
Confidence            4455555554455699999999999988886      3899999998                457788888644 22  


Q ss_pred             ---CCCCCccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEeec
Q 022592          185 ---LNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVK  227 (294)
Q Consensus       185 ---~~~~~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e~~  227 (294)
                         ...++||+|+..+.  ..+....+..+.++|+|||.+++-++.
T Consensus       128 ~~~~~~~~fD~ifiD~d--k~~y~~~~~~~~~lL~~GGvii~Dn~l  171 (219)
T d2avda1         128 LAAGEAGTFDVAVVDAD--KENCSAYYERCLQLLRPGGILAVLRVL  171 (219)
T ss_dssp             HHTTCTTCEEEEEECSC--STTHHHHHHHHHHHEEEEEEEEEECCS
T ss_pred             hhhcccCCccEEEEeCC--HHHHHHHHHHHHHHhcCCcEEEEeCCc
Confidence               23568999997532  346778889999999999999996643

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.39  E-value=1.2e-07  Score=77.07  Aligned_cols=94  Identities=12%  Similarity=0.064  Sum_probs=70.1

Q ss_pred             HHHHHHhhccCCCCEEEEEcCcccHHHHHhc----cceEEEeccC----------------CCCcEEEccCCCC----CC
Q 022592          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS----------------NDPSVIACDMSNT----PL  185 (294)
Q Consensus       130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~----------------~~~~~~~~d~~~l----p~  185 (294)
                      +.+...|.....+.+|||++||+|.++..++    ..|+++|.+.                .++.++.+|+...    .-
T Consensus        30 ealFn~l~~~~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~  109 (182)
T d2fhpa1          30 ESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYE  109 (182)
T ss_dssp             HHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcc
Confidence            3455666655567899999999999998765    3799999987                2567888887542    12


Q ss_pred             CCCCccEEEEcccccCCCHHHHHHHHHH--hcCcCcEEEE
Q 022592          186 NSSSVDVAVFCLSLMGINFPNYLQEAQR--VLKPSGWLLI  223 (294)
Q Consensus       186 ~~~~fD~Vi~~~~l~~~~~~~~l~el~r--~LkpgG~l~i  223 (294)
                      ...+||+|++.......+....+..+..  +|+|+|++++
T Consensus       110 ~~~~fDlIflDPPY~~~~~~~~l~~i~~~~~L~~~giIi~  149 (182)
T d2fhpa1         110 EKLQFDLVLLDPPYAKQEIVSQLEKMLERQLLTNEAVIVC  149 (182)
T ss_dssp             TTCCEEEEEECCCGGGCCHHHHHHHHHHTTCEEEEEEEEE
T ss_pred             cCCCcceEEechhhhhhHHHHHHHHHHHCCCCCCCEEEEE
Confidence            3457999998876555566778887764  6999998775

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=3.3e-06  Score=71.73  Aligned_cols=107  Identities=8%  Similarity=0.055  Sum_probs=72.2

Q ss_pred             CCCEEEEEcCcccHHHHHhc-----cceEEEeccC----------------CCCcEEEccCCCC------CCCCCCccEE
Q 022592          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS----------------NDPSVIACDMSNT------PLNSSSVDVA  193 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~----------------~~~~~~~~d~~~l------p~~~~~fD~V  193 (294)
                      +..+|||||||+|..+..++     .+++|+|+++                .++.+...+....      ...+++||+|
T Consensus        61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i  140 (250)
T d2h00a1          61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC  140 (250)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred             ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeEE
Confidence            34589999999999888776     3899999998                2344555443321      1235689999


Q ss_pred             EEcccccCC-C-----------------------------------HHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCC
Q 022592          194 VFCLSLMGI-N-----------------------------------FPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGA  237 (294)
Q Consensus       194 i~~~~l~~~-~-----------------------------------~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~  237 (294)
                      +|+.-++.. +                                   ....+++....++..|++... +..       .-
T Consensus       141 vsNPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~~gGe~~F~~~ii~es~~~~~~~g~~t~~-ig~-------~~  212 (250)
T d2h00a1         141 MCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCM-LGK-------KC  212 (250)
T ss_dssp             EECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEEEE-ESS-------TT
T ss_pred             EecCcccccchhhhccccccccccCchhhcCccccccccccchhhHHHHHHHHHHHHhhcCcEEEEE-ecc-------hh
Confidence            998887631 0                                   123455666778888887653 221       12


Q ss_pred             CHHHHHHHHHHCCCeEEE
Q 022592          238 DPNKFSKAVCDLGFAPVS  255 (294)
Q Consensus       238 ~~~~~~~~l~~~Gf~~~~  255 (294)
                      +...+...|++.|+..+.
T Consensus       213 ~l~~i~~~L~~~g~~~i~  230 (250)
T d2h00a1         213 SLAPLKEELRIQGVPKVT  230 (250)
T ss_dssp             SHHHHHHHHHHTTCSEEE
T ss_pred             hHHHHHHHHHHcCCCeEE
Confidence            568899999999996544

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.38  E-value=4.3e-07  Score=79.55  Aligned_cols=110  Identities=13%  Similarity=0.023  Sum_probs=74.0

Q ss_pred             HHHhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccC-----------------CCCcEEEccCCCCC----CCCC
Q 022592          133 VKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS-----------------NDPSVIACDMSNTP----LNSS  188 (294)
Q Consensus       133 ~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~-----------------~~~~~~~~d~~~lp----~~~~  188 (294)
                      .+.+.....+.+|||++||+|.++..++   ++|++||.|.                 .++.++++|+...-    ....
T Consensus       124 ~~~~~~~~~~~rVLdlf~~tG~~sl~aa~~GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~  203 (309)
T d2igta1         124 KNAVETADRPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGS  203 (309)
T ss_dssp             HHHHHHSSSCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTC
T ss_pred             HHHHhhccCCCeEEEecCCCcHHHHHHHhCCCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCC
Confidence            3344444456799999999999988876   4899999997                 24678888886531    2346


Q ss_pred             CccEEEEccccc--------C---CCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHH
Q 022592          189 SVDVAVFCLSLM--------G---INFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCD  248 (294)
Q Consensus       189 ~fD~Vi~~~~l~--------~---~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~  248 (294)
                      .||+||+..--.        +   .+....+..+.++|+|||.++++......      ++...+.+++.+
T Consensus       204 ~fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~s~~------~s~~~~~~~~~~  268 (309)
T d2igta1         204 TYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSIR------ASFYSMHELMRE  268 (309)
T ss_dssp             CBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTT------SCHHHHHHHHHH
T ss_pred             CCCEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEecCCCC------CCHHHHHHHHHH
Confidence            899999853321        1   02345667788999999987776543322      345555555443

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.38  E-value=1.6e-06  Score=76.31  Aligned_cols=126  Identities=19%  Similarity=0.227  Sum_probs=84.5

Q ss_pred             CCCEEEEEcCcccHHHHHhc----------cceEEEeccC--------------CCCcEEEccCCCCCCCCCCccEEEEc
Q 022592          141 PSLVIADFGCGDARLAKSVK----------NKVFSFDLVS--------------NDPSVIACDMSNTPLNSSSVDVAVFC  196 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~----------~~v~gvD~s~--------------~~~~~~~~d~~~lp~~~~~fD~Vi~~  196 (294)
                      ++.+|||.|||+|.++..+.          ..++|+|+++              ....+..+|..... +...||+|+++
T Consensus       117 ~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~-~~~~fD~vi~N  195 (328)
T d2f8la1         117 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANL-LVDPVDVVISD  195 (328)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCC-CCCCEEEEEEE
T ss_pred             CCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhcccccccc-ccccccccccC
Confidence            55689999999999987764          1689999987              34556666654433 35689999998


Q ss_pred             ccccC-CC------------------HHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEE-E
Q 022592          197 LSLMG-IN------------------FPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVS-K  256 (294)
Q Consensus       197 ~~l~~-~~------------------~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~-~  256 (294)
                      ..+.. ..                  ...++..+.+.|+|||++.++-..+.+..    -....+.+.|.+.+. +.. +
T Consensus       196 PPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~~l~~----~~~~~lR~~L~~~~~-i~~ii  270 (328)
T d2f8la1         196 LPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGT----SDFAKVDKFIKKNGH-IEGII  270 (328)
T ss_dssp             CCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGS----TTHHHHHHHHHHHEE-EEEEE
T ss_pred             CCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCccccC----chhHHHHHHHHhCCc-EEEEE
Confidence            77632 10                  23579999999999999988766554432    245677777666553 322 2


Q ss_pred             ec-------cCCeEEEEEEEECC
Q 022592          257 DF-------SNKMFIMFYFKKKE  272 (294)
Q Consensus       257 ~~-------~~~~f~~i~~~k~~  272 (294)
                      ..       ....-.+++++|..
T Consensus       271 ~lp~~~F~~~~~~t~ilvl~K~~  293 (328)
T d2f8la1         271 KLPETLFKSEQARKSILILEKAD  293 (328)
T ss_dssp             ECCGGGSCC-CCCEEEEEEEECC
T ss_pred             ECCccccCCCCCCeEEEEEECCC
Confidence            22       22234677777764

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=98.37  E-value=1.8e-07  Score=75.19  Aligned_cols=93  Identities=10%  Similarity=0.110  Sum_probs=59.7

Q ss_pred             HHHHHhhcc-CCCCEEEEEcCcccHHHHHhc---cceEEEeccCC--------------CCcEEEccCCC----CCCCCC
Q 022592          131 IIVKWLKDH-SPSLVIADFGCGDARLAKSVK---NKVFSFDLVSN--------------DPSVIACDMSN----TPLNSS  188 (294)
Q Consensus       131 ~~~~~l~~~-~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~~--------------~~~~~~~d~~~----lp~~~~  188 (294)
                      .+..++... ..+.+|||+|||+|.++..++   ..++++|.++.              ...+...+...    ......
T Consensus        30 ~lf~~l~~~~~~g~~vLDl~~G~G~~~i~a~~~ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~  109 (171)
T d1ws6a1          30 ALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGE  109 (171)
T ss_dssp             HHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTC
T ss_pred             HHHHHhhccccCCCeEEEeccccchhhhhhhhccchhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCC
Confidence            344455432 357799999999999988765   47889999982              22333333321    223457


Q ss_pred             CccEEEEcccccCCCHHHHHHHHH--HhcCcCcEEEEE
Q 022592          189 SVDVAVFCLSLMGINFPNYLQEAQ--RVLKPSGWLLIA  224 (294)
Q Consensus       189 ~fD~Vi~~~~l~~~~~~~~l~el~--r~LkpgG~l~i~  224 (294)
                      +||+|++...+.. +....+.++.  .+|+|||.+++.
T Consensus       110 ~fD~If~DPPY~~-~~~~~l~~l~~~~ll~~~g~ivie  146 (171)
T d1ws6a1         110 RFTVAFMAPPYAM-DLAALFGELLASGLVEAGGLYVLQ  146 (171)
T ss_dssp             CEEEEEECCCTTS-CTTHHHHHHHHHTCEEEEEEEEEE
T ss_pred             ccceeEEcccccc-CHHHHHHHHHHcCCcCCCeEEEEE
Confidence            8999998765443 3333444443  479999988774

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.14  E-value=2.3e-06  Score=71.64  Aligned_cols=94  Identities=13%  Similarity=0.062  Sum_probs=70.5

Q ss_pred             HHHHHhhccCCCCEEEEEcCcccHHHHHhc------cceEEEeccC----------------CCCcEEEccCCC-CC---
Q 022592          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----------------NDPSVIACDMSN-TP---  184 (294)
Q Consensus       131 ~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~----------------~~~~~~~~d~~~-lp---  184 (294)
                      .++..+.......+|||||+++|+-+..++      ++++.+|.++                +.+.++.+++.+ ++   
T Consensus        49 ~~L~~L~~~~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~  128 (227)
T d1susa1          49 QFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMI  128 (227)
T ss_dssp             HHHHHHHHHHTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHH
Confidence            455555444345699999999999888776      4899999988                356788887754 22   


Q ss_pred             ---CCCCCccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEee
Q 022592          185 ---LNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEV  226 (294)
Q Consensus       185 ---~~~~~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e~  226 (294)
                         ...++||+|+...  .+......+..+.++|+|||.+++-++
T Consensus       129 ~~~~~~~~fD~iFiDa--~k~~y~~~~e~~~~ll~~gGiii~DNv  171 (227)
T d1susa1         129 KDEKNHGSYDFIFVDA--DKDNYLNYHKRLIDLVKVGGVIGYDNT  171 (227)
T ss_dssp             HCGGGTTCBSEEEECS--CSTTHHHHHHHHHHHBCTTCCEEEETT
T ss_pred             hccccCCceeEEEecc--chhhhHHHHHHHHhhcCCCcEEEEccC
Confidence               1246899999763  235778899999999999999999654

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=98.09  E-value=7.3e-07  Score=75.70  Aligned_cols=74  Identities=19%  Similarity=0.175  Sum_probs=59.0

Q ss_pred             cHHHHHHHHhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccC-------------CCCcEEEccCCCCCCCCCCc
Q 022592          127 LPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS-------------NDPSVIACDMSNTPLNSSSV  190 (294)
Q Consensus       127 ~~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~-------------~~~~~~~~d~~~lp~~~~~f  190 (294)
                      ..++.+++.+... ++..|||||||+|.++..|+   ..|+++|+++             .++.++.+|+.+++++...+
T Consensus        16 ~ii~kIv~~~~~~-~~d~VLEIGpG~G~LT~~L~~~~~~v~aIE~D~~l~~~l~~~~~~~~n~~ii~~D~l~~~~~~~~~   94 (245)
T d1yuba_          16 KVLNQIIKQLNLK-ETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQR   94 (245)
T ss_dssp             TTHHHHHHHCCCC-SSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSE
T ss_pred             HHHHHHHHhcCCC-CCCeEEEECCCccHHHHHHHhhcCceeEeeecccchhhhhhhhhhccchhhhhhhhhcccccccee
Confidence            4456777777655 66799999999999998886   5899999987             35678899999988887778


Q ss_pred             cEEEEcccccC
Q 022592          191 DVAVFCLSLMG  201 (294)
Q Consensus       191 D~Vi~~~~l~~  201 (294)
                      +.|+++...+-
T Consensus        95 ~~vv~NLPY~I  105 (245)
T d1yuba_          95 YKIVGNIPYHL  105 (245)
T ss_dssp             EEEEEECCSSS
T ss_pred             eeEeeeeehhh
Confidence            88887766543

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=98.04  E-value=1.4e-05  Score=67.12  Aligned_cols=125  Identities=14%  Similarity=0.099  Sum_probs=86.3

Q ss_pred             CCCEEEEEcCcccHHHHHhc-----cceEEEeccC---------------CCCcEEEccCCCCCC---CCCCccEEEEcc
Q 022592          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSNTPL---NSSSVDVAVFCL  197 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~---------------~~~~~~~~d~~~lp~---~~~~fD~Vi~~~  197 (294)
                      ...+|+|||+|.|.=+..++     .+++.+|-+.               .++.++...++.+..   ..++||+|++..
T Consensus        70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~sRA  149 (239)
T d1xdza_          70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTARA  149 (239)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEEC
T ss_pred             CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhccccccccccceEEEEhh
Confidence            35689999999998655554     3799999876               466777776665432   235799999875


Q ss_pred             cccCCCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEEe-----ccCCeEEEEEEEECC
Q 022592          198 SLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSKD-----FSNKMFIMFYFKKKE  272 (294)
Q Consensus       198 ~l~~~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~-----~~~~~f~~i~~~k~~  272 (294)
                      +   .+...++.-+...+++||.+++.-=. .+.     -..++....+...|+++..+.     .....-.+++++|..
T Consensus       150 v---a~l~~ll~~~~~~l~~~g~~i~~KG~-~~~-----~El~~a~~~~~~~~~~~~~v~~~~lp~~~~~r~lv~i~K~~  220 (239)
T d1xdza_         150 V---ARLSVLSELCLPLVKKNGLFVALKAA-SAE-----EELNAGKKAITTLGGELENIHSFKLPIEESDRNIMVIRKIK  220 (239)
T ss_dssp             C---SCHHHHHHHHGGGEEEEEEEEEEECC--CH-----HHHHHHHHHHHHTTEEEEEEEEEECTTTCCEEEEEEEEECS
T ss_pred             h---hCHHHHHHHHhhhcccCCEEEEECCC-ChH-----HHHHHHHHHHHHcCCEEEEEEEEeCCCCCCCEEEEEEEECC
Confidence            5   46788899999999999999886311 110     012334556788899876532     244556788888876


Q ss_pred             cc
Q 022592          273 KQ  274 (294)
Q Consensus       273 ~~  274 (294)
                      ..
T Consensus       221 ~~  222 (239)
T d1xdza_         221 NT  222 (239)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=98.01  E-value=7.5e-06  Score=67.48  Aligned_cols=81  Identities=9%  Similarity=0.100  Sum_probs=65.1

Q ss_pred             CCCEEEEEcCcccHHHHHhc-----cceEEEeccC---------------CCCcEEEccCCCCCCCCCCccEEEEccccc
Q 022592          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLM  200 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~---------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~  200 (294)
                      ++.+|+|||+|.|.=+..++     .+++.+|.+.               .++.++...++++.. ..+||+|++..+  
T Consensus        65 ~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~-~~~fD~V~sRA~--  141 (207)
T d1jsxa_          65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPS-EPPFDGVISRAF--  141 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCC-CSCEEEEECSCS--
T ss_pred             cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhcc-ccccceehhhhh--
Confidence            45699999999998555554     3899999876               578888888888753 567999998655  


Q ss_pred             CCCHHHHHHHHHHhcCcCcEEEEEe
Q 022592          201 GINFPNYLQEAQRVLKPSGWLLIAE  225 (294)
Q Consensus       201 ~~~~~~~l~el~r~LkpgG~l~i~e  225 (294)
                       .+...++.-+...+++||.+++.-
T Consensus       142 -~~~~~ll~~~~~~l~~~g~~~~~K  165 (207)
T d1jsxa_         142 -ASLNDMVSWCHHLPGEQGRFYALK  165 (207)
T ss_dssp             -SSHHHHHHHHTTSEEEEEEEEEEE
T ss_pred             -cCHHHHHHHHHHhcCCCcEEEEEC
Confidence             467788888999999999999863

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=97.91  E-value=5.5e-06  Score=66.93  Aligned_cols=93  Identities=18%  Similarity=0.147  Sum_probs=63.6

Q ss_pred             HHHHHhhccCCCCEEEEEcCcccHHHHHhc----cceEEEeccCC-----------------CCcEEEccCCC---CCCC
Q 022592          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVSN-----------------DPSVIACDMSN---TPLN  186 (294)
Q Consensus       131 ~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~~-----------------~~~~~~~d~~~---lp~~  186 (294)
                      .+...|.....+.+|||+.||||.++..+.    ..|+.||.+..                 ...+...|+..   ....
T Consensus        33 alFn~l~~~~~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~  112 (183)
T d2ifta1          33 TLFNWLMPYIHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQN  112 (183)
T ss_dssp             HHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCS
T ss_pred             HHHHHhhhhcccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhccccccccccccccccccccccc
Confidence            344444433366799999999999998876    48999998871                 12333343322   2333


Q ss_pred             CCCccEEEEcccccCCCHHHHHHHHHH--hcCcCcEEEE
Q 022592          187 SSSVDVAVFCLSLMGINFPNYLQEAQR--VLKPSGWLLI  223 (294)
Q Consensus       187 ~~~fD~Vi~~~~l~~~~~~~~l~el~r--~LkpgG~l~i  223 (294)
                      ...||+|++............+..+..  +|+++|.+++
T Consensus       113 ~~~fDlIFlDPPY~~~~~~~~l~~l~~~~~L~~~~liii  151 (183)
T d2ifta1         113 QPHFDVVFLDPPFHFNLAEQAISLLCENNWLKPNALIYV  151 (183)
T ss_dssp             SCCEEEEEECCCSSSCHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred             CCcccEEEechhHhhhhHHHHHHHHHHhCCcCCCcEEEE
Confidence            557999999877665455677777654  7999998877

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.90  E-value=5.7e-06  Score=66.85  Aligned_cols=117  Identities=20%  Similarity=0.256  Sum_probs=84.8

Q ss_pred             HHHHHHHhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccC-----------CCCcEEEccCCCCC-----CCCCC
Q 022592          129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS-----------NDPSVIACDMSNTP-----LNSSS  189 (294)
Q Consensus       129 ~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~-----------~~~~~~~~d~~~lp-----~~~~~  189 (294)
                      ++.+++.|... ++..++|..+|.|.++..+.   .+|+|+|..+           .++.++..++.++.     ...+.
T Consensus         7 l~Evl~~l~~~-~g~~~vD~T~G~GGhs~~iL~~~~~viaiD~D~~ai~~a~~~~~~~~~~~~~~f~~~~~~l~~~~~~~   85 (182)
T d1wg8a2           7 YQEALDLLAVR-PGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAALGVER   85 (182)
T ss_dssp             HHHHHHHHTCC-TTCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHTTCSC
T ss_pred             HHHHHHhcCCC-CCCEEEEeCCCCcHHHHHHhcccCcEEEEhhhhhHHHHHhhccccceeEeehHHHHHHHHHHHcCCCc
Confidence            45677777666 77899999999999988886   5899999887           36677777665532     33467


Q ss_pred             ccEEEEcccccC-----C-----CHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEE
Q 022592          190 VDVAVFCLSLMG-----I-----NFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPV  254 (294)
Q Consensus       190 fD~Vi~~~~l~~-----~-----~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~  254 (294)
                      +|.|++...+..     .     .....|.....+|+|||.+++..+++.-        ...+...+++.+|+..
T Consensus        86 vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fhs~E--------d~ivk~~~~e~~~k~i  152 (182)
T d1wg8a2          86 VDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFHSLE--------DRVVKRFLRESGLKVL  152 (182)
T ss_dssp             EEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECSHHH--------HHHHHHHHHHHCSEES
T ss_pred             cCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEecccch--------hHHHHHHHhhccceec
Confidence            999998766542     1     1335788889999999999998765321        1346677787776554

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=97.89  E-value=5.3e-06  Score=69.81  Aligned_cols=70  Identities=11%  Similarity=0.133  Sum_probs=52.7

Q ss_pred             HHHHHHHhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccC-------------CCCcEEEccCCCCCCCCCCccE
Q 022592          129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS-------------NDPSVIACDMSNTPLNSSSVDV  192 (294)
Q Consensus       129 ~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~-------------~~~~~~~~d~~~lp~~~~~fD~  192 (294)
                      ++.+++.+... ++..|||||||+|.++..|+   ..|+++|+.+             .++.++.+|+..++++......
T Consensus        10 ~~~iv~~~~~~-~~d~VlEIGpG~G~LT~~Ll~~~~~v~avE~D~~l~~~l~~~~~~~~n~~i~~~D~l~~~~~~~~~~~   88 (235)
T d1qama_          10 IDKIMTNIRLN-EHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQSYK   88 (235)
T ss_dssp             HHHHHTTCCCC-TTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSCCCE
T ss_pred             HHHHHHhcCCC-CCCeEEEECCCchHHHHHHHhCcCceEEEeeccchHHHHHHHhhcccchhhhhhhhhhccccccccce
Confidence            34455544433 67899999999999999887   4899999876             5788999999988876655555


Q ss_pred             EEEcccc
Q 022592          193 AVFCLSL  199 (294)
Q Consensus       193 Vi~~~~l  199 (294)
                      |+++.-.
T Consensus        89 vv~NLPY   95 (235)
T d1qama_          89 IFGNIPY   95 (235)
T ss_dssp             EEEECCG
T ss_pred             eeeeehh
Confidence            6665443

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.89  E-value=4.3e-06  Score=72.07  Aligned_cols=126  Identities=12%  Similarity=0.015  Sum_probs=79.2

Q ss_pred             CCCEEEEEcCcccHHHHHhc----cceEEEeccC-------------------------CCCcEEEccCCCCCCCCCCcc
Q 022592          141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVS-------------------------NDPSVIACDMSNTPLNSSSVD  191 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~-------------------------~~~~~~~~d~~~lp~~~~~fD  191 (294)
                      ...+||.||+|.|..+..+.    .+|++||+.+                         ++++++.+|+...--.+++||
T Consensus        72 ~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~yD  151 (276)
T d1mjfa_          72 KPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRGFD  151 (276)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCCEE
T ss_pred             CCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCCCC
Confidence            45699999999999988776    3788999876                         245677887754322357899


Q ss_pred             EEEEcccccCC-----CHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEEec----c-CC
Q 022592          192 VAVFCLSLMGI-----NFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSKDF----S-NK  261 (294)
Q Consensus       192 ~Vi~~~~l~~~-----~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~----~-~~  261 (294)
                      +|++...-...     --.++++.+.+.|+|||++++-.-.....+    -....+.+-|.+. |..+....    + ..
T Consensus       152 vIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~~s~~~~~----~~~~~~~~tl~~~-F~~v~~y~~~vP~y~~  226 (276)
T d1mjfa_         152 VIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSVYLFT----DELISAYKEMKKV-FDRVYYYSFPVIGYAS  226 (276)
T ss_dssp             EEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEETTTSH----HHHHHHHHHHHHH-CSEEEEEEECCTTSSS
T ss_pred             EEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEecCCcchhH----HHHHHHHHHHHhh-CCeeEEEEecCcCCCC
Confidence            99975443221     225899999999999999877422211111    0122344455555 66655322    1 23


Q ss_pred             eEEEEEEEEC
Q 022592          262 MFIMFYFKKK  271 (294)
Q Consensus       262 ~f~~i~~~k~  271 (294)
                      .+.++.+.+.
T Consensus       227 ~w~f~~as~~  236 (276)
T d1mjfa_         227 PWAFLVGVKG  236 (276)
T ss_dssp             SEEEEEEEES
T ss_pred             ceEEEEEeCC
Confidence            3566666554

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=97.88  E-value=4.7e-06  Score=73.06  Aligned_cols=127  Identities=13%  Similarity=0.060  Sum_probs=80.0

Q ss_pred             CCCEEEEEcCcccHHHHHhc-----cceEEEeccC--------------------CCCcEEEccCCC-CCCCCCCccEEE
Q 022592          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS--------------------NDPSVIACDMSN-TPLNSSSVDVAV  194 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~--------------------~~~~~~~~d~~~-lp~~~~~fD~Vi  194 (294)
                      ...+||.||.|.|..+..+.     .+|++||+.+                    ++++++.+|+.. +.-.+..||+|+
T Consensus        77 ~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi  156 (312)
T d1uira_          77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVI  156 (312)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEE
T ss_pred             CcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEEE
Confidence            44699999999999988775     3789999886                    356788888765 223356799999


Q ss_pred             EcccccC--C------CHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEEec----c-CC
Q 022592          195 FCLSLMG--I------NFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSKDF----S-NK  261 (294)
Q Consensus       195 ~~~~l~~--~------~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~----~-~~  261 (294)
                      +...-.+  .      --.++++.+.+.|+|||++++-.-.......   .-...+.+.+.+. |..+....    + ..
T Consensus       157 ~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~s~~~~~~---~~~~~i~~tl~~~-F~~V~~y~~~vPs~~~  232 (312)
T d1uira_         157 IDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHH---RVHPVVHRTVREA-FRYVRSYKNHIPGFFL  232 (312)
T ss_dssp             EECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC------CHHHHHHHHHHTT-CSEEEEEEEEEGGGTE
T ss_pred             EeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEecCCcccchH---HHHHHHHHHHHHh-CceEEEEEeeeCCcCC
Confidence            7543211  1      1257999999999999988773211111110   0123344556665 66555322    1 22


Q ss_pred             eEEEEEEEEC
Q 022592          262 MFIMFYFKKK  271 (294)
Q Consensus       262 ~f~~i~~~k~  271 (294)
                      .+.++.+.+.
T Consensus       233 ~w~f~~aS~~  242 (312)
T d1uira_         233 NFGFLLASDA  242 (312)
T ss_dssp             EEEEEEEESS
T ss_pred             CCEeEEEeCC
Confidence            4566667664

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.87  E-value=7.3e-05  Score=65.23  Aligned_cols=119  Identities=13%  Similarity=0.150  Sum_probs=79.7

Q ss_pred             HHHHhhccCCCCEEEEEcCcccHHHHHhc------cceEEEeccC---------------CCCcEEEccCCCCCCCCCCc
Q 022592          132 IVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSV  190 (294)
Q Consensus       132 ~~~~l~~~~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~---------------~~~~~~~~d~~~lp~~~~~f  190 (294)
                      +...+....++.+|||++||+|.=+..++      ..++++|++.               .++.....|...++.....|
T Consensus       107 l~~~~l~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~~~~~f  186 (313)
T d1ixka_         107 YPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEF  186 (313)
T ss_dssp             HHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCE
T ss_pred             chhhcccCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccccccccccccccc
Confidence            34444333478899999999998544443      3699999997               34555566666666667789


Q ss_pred             cEEEEcccccC-------C------C----------HHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHH
Q 022592          191 DVAVFCLSLMG-------I------N----------FPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVC  247 (294)
Q Consensus       191 D~Vi~~~~l~~-------~------~----------~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~  247 (294)
                      |.|+....-..       .      .          -...+..+...|||||.|+.+.-.-...     -+.+.+..+|+
T Consensus       187 D~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~~e-----ENE~VV~~~L~  261 (313)
T d1ixka_         187 DKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPE-----ENEFVIQWALD  261 (313)
T ss_dssp             EEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGG-----GTHHHHHHHHH
T ss_pred             cEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCChH-----hHHHHHHHHHh
Confidence            99986332211       1      1          1257888999999999999876432111     14466778888


Q ss_pred             HCCCeEEE
Q 022592          248 DLGFAPVS  255 (294)
Q Consensus       248 ~~Gf~~~~  255 (294)
                      +.+|+++.
T Consensus       262 ~~~~~~~~  269 (313)
T d1ixka_         262 NFDVELLP  269 (313)
T ss_dssp             HSSEEEEC
T ss_pred             cCCCEEee
Confidence            88877664

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=97.86  E-value=5.2e-05  Score=63.36  Aligned_cols=84  Identities=12%  Similarity=0.148  Sum_probs=57.7

Q ss_pred             CCEEEEEcCcccHHHHHhc---------cceEEEeccC----------CCCcEEEccCCCCC----CCCCCccEEEEccc
Q 022592          142 SLVIADFGCGDARLAKSVK---------NKVFSFDLVS----------NDPSVIACDMSNTP----LNSSSVDVAVFCLS  198 (294)
Q Consensus       142 ~~~VLDiGcG~G~~~~~l~---------~~v~gvD~s~----------~~~~~~~~d~~~lp----~~~~~fD~Vi~~~~  198 (294)
                      +..|||||++.|.-+..++         .+++|+|+..          .++.++.+|..+..    +....+|+|+.-..
T Consensus        81 Pk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~~~~~I~~i~gDs~~~~~~~~l~~~~~dlIfID~~  160 (232)
T d2bm8a1          81 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDNA  160 (232)
T ss_dssp             CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEESS
T ss_pred             CCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhccccceeeeecccccHHHHHHHHhcCCCEEEEcCC
Confidence            4599999999997655443         4899999865          46778888876532    23446888776543


Q ss_pred             ccCCCHH-HHHHHHHHhcCcCcEEEEEeec
Q 022592          199 LMGINFP-NYLQEAQRVLKPSGWLLIAEVK  227 (294)
Q Consensus       199 l~~~~~~-~~l~el~r~LkpgG~l~i~e~~  227 (294)
                       |+.+.. ..+ ++..+|++||++++-|..
T Consensus       161 -H~~~~v~~~~-~~~~lLk~GG~iIveD~i  188 (232)
T d2bm8a1         161 -HANTFNIMKW-AVDHLLEEGDYFIIEDMI  188 (232)
T ss_dssp             -CSSHHHHHHH-HHHHTCCTTCEEEECSCH
T ss_pred             -cchHHHHHHH-HHhcccCcCCEEEEEcCC
Confidence             433222 222 466899999999997643

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=97.82  E-value=0.00016  Score=63.90  Aligned_cols=109  Identities=15%  Similarity=0.319  Sum_probs=75.2

Q ss_pred             HHHHhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccC---------------CCCcEEEccCCCC----CCCCCC
Q 022592          132 IVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS---------------NDPSVIACDMSNT----PLNSSS  189 (294)
Q Consensus       132 ~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~---------------~~~~~~~~d~~~l----p~~~~~  189 (294)
                      +++++... ++.+|||+-||.|.++..|+   .+|+|+|.++               .++.++.+|++..    +.....
T Consensus       204 v~~~~~~~-~~~~vlDLycG~G~fsl~La~~~~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~~~~~~  282 (358)
T d1uwva2         204 ALEWLDVQ-PEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNG  282 (358)
T ss_dssp             HHHHHTCC-TTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTC
T ss_pred             HHHhhccC-CCceEEEecccccccchhccccccEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhhhhhhcc
Confidence            44444433 56799999999999999997   4899999987               4678888888652    223467


Q ss_pred             ccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHH---HHHHHCCCeEEEE
Q 022592          190 VDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFS---KAVCDLGFAPVSK  256 (294)
Q Consensus       190 fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~---~~l~~~Gf~~~~~  256 (294)
                      +|+|+....=..  ..+++..+.+. +|.-+++|+-            ++.++.   ..|.+.||++..+
T Consensus       283 ~d~vilDPPR~G--~~~~~~~l~~~-~~~~ivYVSC------------np~TlaRDl~~l~~~gy~l~~i  337 (358)
T d1uwva2         283 FDKVLLDPARAG--AAGVMQQIIKL-EPIRIVYVSC------------NPATLARDSEALLKAGYTIARL  337 (358)
T ss_dssp             CSEEEECCCTTC--CHHHHHHHHHH-CCSEEEEEES------------CHHHHHHHHHHHHHTTCEEEEE
T ss_pred             CceEEeCCCCcc--HHHHHHHHHHc-CCCEEEEEeC------------CHHHHHHHHHHHHHCCCeEeEE
Confidence            899887533222  23577777764 6766666652            445553   4466789998883

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.80  E-value=3.8e-05  Score=69.84  Aligned_cols=143  Identities=15%  Similarity=0.151  Sum_probs=92.5

Q ss_pred             CCcHHHHHHHHhhccCCCCEEEEEcCcccHHHHHhc------------------cceEEEeccC----------------
Q 022592          125 PELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK------------------NKVFSFDLVS----------------  170 (294)
Q Consensus       125 ~~~~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~------------------~~v~gvD~s~----------------  170 (294)
                      |...++.++..+... ++.+|+|.+||+|.++..+.                  ..++|+|+++                
T Consensus       147 P~~Iv~~mv~ll~~~-~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~  225 (425)
T d2okca1         147 PRPLIQAMVDCINPQ-MGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIG  225 (425)
T ss_dssp             CHHHHHHHHHHHCCC-TTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCC
T ss_pred             chhhhHhhheeccCc-ccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCc
Confidence            455667777777654 56799999999999987653                  1488999886                


Q ss_pred             -CCCcEEEccCCCCCCCCCCccEEEEcccccCC-------C-----------HHHHHHHHHHhcCcCcEEEEEeecCCCC
Q 022592          171 -NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGI-------N-----------FPNYLQEAQRVLKPSGWLLIAEVKSRFD  231 (294)
Q Consensus       171 -~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~-------~-----------~~~~l~el~r~LkpgG~l~i~e~~~~~~  231 (294)
                       ....+...|....+ +...||+|+++..+...       +           ...++..+...|++||.+.++-..+.+.
T Consensus       226 ~~~~~i~~~d~l~~~-~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p~~~L~  304 (425)
T d2okca1         226 TDRSPIVCEDSLEKE-PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPDNVLF  304 (425)
T ss_dssp             SSCCSEEECCTTTSC-CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHH
T ss_pred             cccceeecCchhhhh-cccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEechHHhh
Confidence             23456677765543 35679999998877421       0           2369999999999999988876544322


Q ss_pred             CCCCCCCHHHHHHHHHHCCCeEEEEec-------cCCeEEEEEEEECC
Q 022592          232 PNTGGADPNKFSKAVCDLGFAPVSKDF-------SNKMFIMFYFKKKE  272 (294)
Q Consensus       232 ~~~~~~~~~~~~~~l~~~Gf~~~~~~~-------~~~~f~~i~~~k~~  272 (294)
                      ..   -....+.+.|-+.+.-..-+..       ......+++++|..
T Consensus       305 ~~---~~~~~iR~~Ll~~~~i~aIi~LP~~~F~~t~v~t~Ilil~K~k  349 (425)
T d2okca1         305 EA---GAGETIRKRLLQDFNLHTILRLPTGIFYAQGVKANVLFFSKGQ  349 (425)
T ss_dssp             CS---THHHHHHHHHHHHEEEEEEEECCSSSSSSTTCCEEEEEEEESS
T ss_pred             hh---hhHHHHHHHHHHhcchhHhhcCCcccccCCCCCeEEEEEECCC
Confidence            11   1235666666554432222222       22334677777753

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=97.74  E-value=7.2e-05  Score=62.65  Aligned_cols=84  Identities=13%  Similarity=0.126  Sum_probs=54.9

Q ss_pred             CCCCEEEEEcCcccHHHHHhcc-----ceEEEeccCC-------------CC-cEE-EccCCCCCCCCCCccEEEEcccc
Q 022592          140 SPSLVIADFGCGDARLAKSVKN-----KVFSFDLVSN-------------DP-SVI-ACDMSNTPLNSSSVDVAVFCLSL  199 (294)
Q Consensus       140 ~~~~~VLDiGcG~G~~~~~l~~-----~v~gvD~s~~-------------~~-~~~-~~d~~~lp~~~~~fD~Vi~~~~l  199 (294)
                      .+...|+|+|||+|.++..++.     .|.|+|+.-+             ++ .+. ..|+..  ++...+|+|+|..+-
T Consensus        65 ~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~P~~~~~~~~ni~~~~~~~dv~~--l~~~~~D~vlcDm~e  142 (257)
T d2p41a1          65 TPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFF--IPPERCDTLLCDIGE  142 (257)
T ss_dssp             CCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTT--SCCCCCSEEEECCCC
T ss_pred             cCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccCCccccccccccccchhhhhHHh--cCCCcCCEEEeeCCC
Confidence            4667999999999999998872     4566666421             11 111 112222  345779999998654


Q ss_pred             cCCCH-------HHHHHHHHHhcCcCcEEEEEe
Q 022592          200 MGINF-------PNYLQEAQRVLKPSGWLLIAE  225 (294)
Q Consensus       200 ~~~~~-------~~~l~el~r~LkpgG~l~i~e  225 (294)
                      ...++       ..+|.-+.++|+|||.|++=-
T Consensus       143 ss~~~~vd~~Rtl~vLela~~wLk~gg~FvvKV  175 (257)
T d2p41a1         143 SSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKV  175 (257)
T ss_dssp             CCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred             CCCCchhhhhhHHHHHHHHHHHcccCCEEEEEE
Confidence            32222       256777789999999877743

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.70  E-value=2e-05  Score=68.29  Aligned_cols=123  Identities=12%  Similarity=0.111  Sum_probs=82.4

Q ss_pred             CCCEEEEEcCcccHHHHHhc-----cceEEEeccC-------------------CCCcEEEccCCC-CCCCCCCccEEEE
Q 022592          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS-------------------NDPSVIACDMSN-TPLNSSSVDVAVF  195 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~-------------------~~~~~~~~d~~~-lp~~~~~fD~Vi~  195 (294)
                      ...+||-||.|.|..+..+.     ..|++||+.+                   ++++++.+|... +.-..+.||+|++
T Consensus        89 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~  168 (295)
T d1inla_          89 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII  168 (295)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred             CCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEEE
Confidence            34699999999999998886     3689999886                   467788888754 3334568999997


Q ss_pred             cccccC------CCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHH---HHHHHHHHCCCeEEEEec------cC
Q 022592          196 CLSLMG------INFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPN---KFSKAVCDLGFAPVSKDF------SN  260 (294)
Q Consensus       196 ~~~l~~------~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~---~~~~~l~~~Gf~~~~~~~------~~  260 (294)
                      ...-..      .--.++++.+.+.|+|||++++-.-...       ++.+   .+.+.+.+. |..+....      ..
T Consensus       169 D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~sp~-------~~~~~~~~i~~tl~~v-F~~v~~y~~~vPtyp~  240 (295)
T d1inla_         169 DSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPF-------YDIGWFKLAYRRISKV-FPITRVYLGFMTTYPS  240 (295)
T ss_dssp             EC----------CCSHHHHHHHHHHEEEEEEEEEECCCTT-------TTHHHHHHHHHHHHHH-CSEEEEEEEECTTSTT
T ss_pred             cCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecCChh-------hhhHHHHHHHHHHHhh-cceeEEEEeeeceecC
Confidence            644322      1236899999999999999887422111       2333   344555555 65555221      23


Q ss_pred             CeEEEEEEEEC
Q 022592          261 KMFIMFYFKKK  271 (294)
Q Consensus       261 ~~f~~i~~~k~  271 (294)
                      ..+.++.+.|.
T Consensus       241 G~w~f~~aSk~  251 (295)
T d1inla_         241 GMWSYTFASKG  251 (295)
T ss_dssp             SEEEEEEEESS
T ss_pred             cccEEEEEeCC
Confidence            57788888775

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=5.7e-05  Score=65.05  Aligned_cols=126  Identities=16%  Similarity=0.111  Sum_probs=81.4

Q ss_pred             CCCEEEEEcCcccHHHHHhc-----cceEEEeccC-------------------CCCcEEEccCCC-CCCCCCCccEEEE
Q 022592          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS-------------------NDPSVIACDMSN-TPLNSSSVDVAVF  195 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~-------------------~~~~~~~~d~~~-lp~~~~~fD~Vi~  195 (294)
                      ...+||-||.|.|..+..+.     .+++.+|+.+                   ++++++.+|... +.-..++||+|++
T Consensus        78 ~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi~  157 (285)
T d2o07a1          78 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIIT  157 (285)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEEE
T ss_pred             CcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEEE
Confidence            44689999999999998886     3788898885                   477788888754 2234568999998


Q ss_pred             cccccC-----CCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEEec------cCCeEE
Q 022592          196 CLSLMG-----INFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSKDF------SNKMFI  264 (294)
Q Consensus       196 ~~~l~~-----~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~------~~~~f~  264 (294)
                      ...--.     .--..+++.+.+.|+|||.+++-.....+..    -....+.+.++.. |..+....      ....+.
T Consensus       158 D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~~~~~----~~~~~~~~tl~~~-F~~v~~y~~~vP~~~~g~w~  232 (285)
T d2o07a1         158 DSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGECQWLHL----DLIKEMRQFCQSL-FPVVAYAYCTIPTYPSGQIG  232 (285)
T ss_dssp             ECC-----------CHHHHHHHHHEEEEEEEEEEEECTTTCH----HHHHHHHHHHHHH-CSEEEEEEEECTTSGGGEEE
T ss_pred             cCCCCCCcccccccHHHHHHHHHhcCCCCeEEEeccchhhhH----HHHHHHHHHHHhc-CCeeeEEeeeeeecCCCCeE
Confidence            643211     1224789999999999999988532222211    0123344455554 76665321      234677


Q ss_pred             EEEEEEC
Q 022592          265 MFYFKKK  271 (294)
Q Consensus       265 ~i~~~k~  271 (294)
                      ++.+.|.
T Consensus       233 f~~aSk~  239 (285)
T d2o07a1         233 FMLCSKN  239 (285)
T ss_dssp             EEEEESS
T ss_pred             EEEEECC
Confidence            7778764

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=97.60  E-value=4.2e-05  Score=65.56  Aligned_cols=126  Identities=14%  Similarity=0.135  Sum_probs=83.0

Q ss_pred             CCCEEEEEcCcccHHHHHhc-----cceEEEeccC-------------------CCCcEEEccCCC-CCCCCCCccEEEE
Q 022592          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS-------------------NDPSVIACDMSN-TPLNSSSVDVAVF  195 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~-------------------~~~~~~~~d~~~-lp~~~~~fD~Vi~  195 (294)
                      ...+||-||.|.|..+..+.     .+++.||+.+                   +++.++.+|... +.-..++||+|+.
T Consensus        75 ~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi~  154 (274)
T d1iy9a_          75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV  154 (274)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred             CcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEEE
Confidence            44699999999999998876     3788999887                   467788888754 3334578999998


Q ss_pred             cccccC-----CCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEEe------ccCCeEE
Q 022592          196 CLSLMG-----INFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSKD------FSNKMFI  264 (294)
Q Consensus       196 ~~~l~~-----~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~------~~~~~f~  264 (294)
                      ...-..     .--..+++.+.++|+|||+++.-.-.....+    -....+.+.|.+. |..+...      +....+.
T Consensus       155 D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~s~~~~~----~~~~~i~~tl~~~-F~~v~~y~~~vPsy~~g~w~  229 (274)
T d1iy9a_         155 DSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTP----ELITNVQRDVKEI-FPITKLYTANIPTYPSGLWT  229 (274)
T ss_dssp             SCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTTTCH----HHHHHHHHHHHTT-CSEEEEEEECCTTSGGGCEE
T ss_pred             cCCCCCCcchhhccHHHHHHHHhhcCCCceEEEecCCccccH----HHHHHHHHhhhhh-cCceEEEEEEeeecCCCceE
Confidence            754322     1245899999999999999887421111110    1123455666666 5444422      1234577


Q ss_pred             EEEEEEC
Q 022592          265 MFYFKKK  271 (294)
Q Consensus       265 ~i~~~k~  271 (294)
                      ++.+.|.
T Consensus       230 f~~aS~~  236 (274)
T d1iy9a_         230 FTIGSKK  236 (274)
T ss_dssp             EEEEESS
T ss_pred             EEEEcCC
Confidence            7777764

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.50  E-value=3.1e-05  Score=67.45  Aligned_cols=126  Identities=14%  Similarity=0.060  Sum_probs=77.5

Q ss_pred             CCCEEEEEcCcccHHHHHhc-----cceEEEeccC-------------------CCCcEEEccCCC-CCCCCCCccEEEE
Q 022592          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS-------------------NDPSVIACDMSN-TPLNSSSVDVAVF  195 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~-------------------~~~~~~~~d~~~-lp~~~~~fD~Vi~  195 (294)
                      ...+||-||.|.|..+..+.     .+|+.||+.+                   ++++++.+|... +.-...+||+|++
T Consensus       106 ~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII~  185 (312)
T d2b2ca1         106 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIIT  185 (312)
T ss_dssp             SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEE
T ss_pred             CCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEEE
Confidence            44689999999999998886     3788999876                   355667777654 2233568999998


Q ss_pred             cccccC-----CCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEEec----c--CCeEE
Q 022592          196 CLSLMG-----INFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSKDF----S--NKMFI  264 (294)
Q Consensus       196 ~~~l~~-----~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~----~--~~~f~  264 (294)
                      ...-..     .--..+++.+.++|+|||+++.-.-.....+    -....+.+.+.+. |..+....    .  ...+.
T Consensus       186 D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s~~~~~----~~~~~i~~~l~~v-F~~v~~y~~~vPtyp~G~w~  260 (312)
T d2b2ca1         186 DSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGESVWLHL----PLIAHLVAFNRKI-FPAVTYAQSIVSTYPSGSMG  260 (312)
T ss_dssp             CCC-------------HHHHHHHHEEEEEEEEEECCCTTTCH----HHHHHHHHHHHHH-CSEEEEEEEECTTSGGGEEE
T ss_pred             cCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecCChHHhH----HHHHHHHHHhhhc-cceEEEeeeccCCcCCccce
Confidence            644322     1235789999999999999988421111110    0123344555554 66555221    1  24666


Q ss_pred             EEEEEEC
Q 022592          265 MFYFKKK  271 (294)
Q Consensus       265 ~i~~~k~  271 (294)
                      ++.+.|.
T Consensus       261 f~~aSk~  267 (312)
T d2b2ca1         261 YLICAKN  267 (312)
T ss_dssp             EEEEESS
T ss_pred             eeEEECC
Confidence            7777664

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=97.47  E-value=7.1e-05  Score=69.88  Aligned_cols=143  Identities=15%  Similarity=0.204  Sum_probs=86.8

Q ss_pred             CCcHHHHHHHHhhccCCCCEEEEEcCcccHHHHHhc-----------------------cceEEEeccCC----------
Q 022592          125 PELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK-----------------------NKVFSFDLVSN----------  171 (294)
Q Consensus       125 ~~~~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~-----------------------~~v~gvD~s~~----------  171 (294)
                      |...++.++..+... ++.+|+|.+||+|.++..+.                       ..++|+|+.+.          
T Consensus       149 P~~Iv~~mv~ll~~~-~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~  227 (524)
T d2ar0a1         149 PRPLIKTIIHLLKPQ-PREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCL  227 (524)
T ss_dssp             CHHHHHHHHHHHCCC-TTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHH
T ss_pred             ccchhHhhhhcccCc-cchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHH
Confidence            455566677776654 56799999999999986542                       14789998861          


Q ss_pred             --C--------CcEEEccCCCC-CCCCCCccEEEEcccccCC--------------C-HHHHHHHHHHhcCcCcEEEEEe
Q 022592          172 --D--------PSVIACDMSNT-PLNSSSVDVAVFCLSLMGI--------------N-FPNYLQEAQRVLKPSGWLLIAE  225 (294)
Q Consensus       172 --~--------~~~~~~d~~~l-p~~~~~fD~Vi~~~~l~~~--------------~-~~~~l~el~r~LkpgG~l~i~e  225 (294)
                        .        ..+...+.... ......||+|+++..+.-.              + ...++..+.+.|+|||++.++-
T Consensus       228 l~~~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIl  307 (524)
T d2ar0a1         228 LHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVV  307 (524)
T ss_dssp             TTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hhcccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEEE
Confidence              1        11222222221 1234579999998876420              1 2368999999999999999876


Q ss_pred             ecCCC-CCCCCCCCHHHHHHHHHHCCCeEEEEec-------cCCeEEEEEEEECC
Q 022592          226 VKSRF-DPNTGGADPNKFSKAVCDLGFAPVSKDF-------SNKMFIMFYFKKKE  272 (294)
Q Consensus       226 ~~~~~-~~~~~~~~~~~~~~~l~~~Gf~~~~~~~-------~~~~f~~i~~~k~~  272 (294)
                      ..+.. ...    ....+.+.|-+.+.-..-+..       ......+++++|..
T Consensus       308 P~~~Lf~~~----~~~~iR~~Ll~~~~i~aII~LP~~~F~~t~i~t~Il~l~K~k  358 (524)
T d2ar0a1         308 PDNVLFEGG----KGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGT  358 (524)
T ss_dssp             EHHHHHCCT----HHHHHHHHHHHHEEEEEEEECCSSCSSSCSCCEEEEEEEEBC
T ss_pred             ehHHhhhhh----hhHHHHHHHHHcCCceEEEECCCCcCCCCCCCeEEEEEECCC
Confidence            55432 211    224566555444432212222       23345777777753

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.46  E-value=7e-05  Score=64.63  Aligned_cols=124  Identities=12%  Similarity=0.077  Sum_probs=81.7

Q ss_pred             CCCEEEEEcCcccHHHHHhc-----cceEEEeccC-------------------CCCcEEEccCCC-C-CCCCCCccEEE
Q 022592          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS-------------------NDPSVIACDMSN-T-PLNSSSVDVAV  194 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~-------------------~~~~~~~~d~~~-l-p~~~~~fD~Vi  194 (294)
                      ...+||-||.|.|..+..+.     ..+++||+.+                   +++.++.+|... + ...+++||+|+
T Consensus        80 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvIi  159 (290)
T d1xj5a_          80 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVI  159 (290)
T ss_dssp             CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEE
T ss_pred             CCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEEE
Confidence            34599999999999999886     3789999986                   466788888654 2 23356899999


Q ss_pred             EcccccCC-----CHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHH---HHHHHHHHCCCeEEEE--ecc----C
Q 022592          195 FCLSLMGI-----NFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPN---KFSKAVCDLGFAPVSK--DFS----N  260 (294)
Q Consensus       195 ~~~~l~~~-----~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~---~~~~~l~~~Gf~~~~~--~~~----~  260 (294)
                      ....-...     --..+++.+.+.|+|||++++-.- +.+      +..+   .+.+.+.+....++..  ...    .
T Consensus       160 ~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~-s~~------~~~~~~~~i~~~l~~vF~~~~~y~~~~vPty~~  232 (290)
T d1xj5a_         160 VDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAE-SLW------LHMDIIEDIVSNCREIFKGSVNYAWTSVPTYPS  232 (290)
T ss_dssp             ECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECC-CTT------TCHHHHHHHHHHHHHHCSSCEEEEEEECTTSGG
T ss_pred             EcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecC-CcH------HHHHHHHHHHhhhhhhcccceeEeeEeeeeecC
Confidence            75442221     135899999999999999998431 111      2333   3445566665444331  111    2


Q ss_pred             CeEEEEEEEEC
Q 022592          261 KMFIMFYFKKK  271 (294)
Q Consensus       261 ~~f~~i~~~k~  271 (294)
                      ..+.++.+.+.
T Consensus       233 g~w~f~~as~~  243 (290)
T d1xj5a_         233 GVIGFMLCSTE  243 (290)
T ss_dssp             GEEEEEEEECS
T ss_pred             CceEEEEEeCC
Confidence            45677777664

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=97.45  E-value=0.00043  Score=61.19  Aligned_cols=114  Identities=19%  Similarity=0.263  Sum_probs=77.1

Q ss_pred             CEEEEEcCcccHHHHHhcc---------------------ceEEEeccCCCC----------------cE---EEccCCC
Q 022592          143 LVIADFGCGDARLAKSVKN---------------------KVFSFDLVSNDP----------------SV---IACDMSN  182 (294)
Q Consensus       143 ~~VLDiGcG~G~~~~~l~~---------------------~v~gvD~s~~~~----------------~~---~~~d~~~  182 (294)
                      .+|+|+||.+|..+..+..                     +|+.-|+..+..                -|   +.+.+..
T Consensus        53 ~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSFY~  132 (359)
T d1m6ex_          53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFYG  132 (359)
T ss_dssp             ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSSS
T ss_pred             eEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCchhh
Confidence            4699999999987653321                     456667665211                12   3345555


Q ss_pred             CCCCCCCccEEEEcccccCCC----------------------------------HHHHHHHHHHhcCcCcEEEEEeecC
Q 022592          183 TPLNSSSVDVAVFCLSLMGIN----------------------------------FPNYLQEAQRVLKPSGWLLIAEVKS  228 (294)
Q Consensus       183 lp~~~~~fD~Vi~~~~l~~~~----------------------------------~~~~l~el~r~LkpgG~l~i~e~~~  228 (294)
                      --||+++.|+++++.+|||.+                                  +..+|+.=++-|+|||.++++-+..
T Consensus       133 rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~gr  212 (359)
T d1m6ex_         133 RLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILGR  212 (359)
T ss_dssp             CCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEEEC
T ss_pred             hcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEEecc
Confidence            558899999999999999831                                  3358888889999999999974332


Q ss_pred             CC------------------------------------CCCCCCCCHHHHHHHHHHCC-CeEEEE
Q 022592          229 RF------------------------------------DPNTGGADPNKFSKAVCDLG-FAPVSK  256 (294)
Q Consensus       229 ~~------------------------------------~~~~~~~~~~~~~~~l~~~G-f~~~~~  256 (294)
                      ..                                    .-.....+.+++...+++.| |.+..+
T Consensus       213 ~~~~~~~~~~~~~~~~l~~al~dmv~eGlI~eek~dsfn~P~Y~ps~eEv~~~ie~~gsF~i~~~  277 (359)
T d1m6ex_         213 RSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHI  277 (359)
T ss_dssp             SSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEE
T ss_pred             CCCCCCCCccchHHHHHHHHHHHHHHcCCCCHHHHHhccCccccCCHHHHHHHhccCCCeeeeee
Confidence            11                                    11111158899999999987 555544

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.38  E-value=0.00056  Score=58.54  Aligned_cols=119  Identities=10%  Similarity=-0.021  Sum_probs=73.2

Q ss_pred             HHHHhhccCCCCEEEEEcCcccHHHHHhc-----cceEEEeccCCCC--------------cEEEc-cCCCC-CCCCCCc
Q 022592          132 IVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVSNDP--------------SVIAC-DMSNT-PLNSSSV  190 (294)
Q Consensus       132 ~~~~l~~~~~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~~~~--------------~~~~~-d~~~l-p~~~~~f  190 (294)
                      +...+....++..|||+++|+|.=+..++     ..++++|++..++              ..+.. |.... +...+.|
T Consensus        93 l~~~~L~~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~~~~~~~f  172 (284)
T d1sqga2          93 GCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQF  172 (284)
T ss_dssp             THHHHHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCE
T ss_pred             ccccccCccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccccccchhcccccc
Confidence            33333344478899999999998655554     4799999998422              22222 22211 1234679


Q ss_pred             cEEEEcccccC-------CC----------------HHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHH
Q 022592          191 DVAVFCLSLMG-------IN----------------FPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVC  247 (294)
Q Consensus       191 D~Vi~~~~l~~-------~~----------------~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~  247 (294)
                      |.|+....-..       .+                -...|..+.+.|+|||.|+.+.-.-.-.     -+.+.+..+|+
T Consensus       173 d~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~-----ENE~vv~~~l~  247 (284)
T d1sqga2         173 DRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPE-----ENSLQIKAFLQ  247 (284)
T ss_dssp             EEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGG-----GTHHHHHHHHH
T ss_pred             cEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCchh-----hCHHHHHHHHH
Confidence            99995332211       11                1367888999999999999986432111     14456677788


Q ss_pred             HC-CCeEEE
Q 022592          248 DL-GFAPVS  255 (294)
Q Consensus       248 ~~-Gf~~~~  255 (294)
                      +. +|+++.
T Consensus       248 ~~~~~~~~~  256 (284)
T d1sqga2         248 RTADAELCE  256 (284)
T ss_dssp             HCTTCEECS
T ss_pred             hCCCcEEec
Confidence            74 576644

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.86  E-value=0.00078  Score=57.46  Aligned_cols=69  Identities=23%  Similarity=0.286  Sum_probs=51.4

Q ss_pred             HHHHHHHHhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccC----------------CCCcEEEccCCCCCCCCC
Q 022592          128 PVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS----------------NDPSVIACDMSNTPLNSS  188 (294)
Q Consensus       128 ~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~----------------~~~~~~~~d~~~lp~~~~  188 (294)
                      .++.+++.+... ++..|||||+|+|.++..|+   .+|+++++.+                .++.++.+|+....++. 
T Consensus         9 i~~kIv~~~~~~-~~d~VlEIGPG~G~LT~~Ll~~~~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~~~-   86 (278)
T d1zq9a1           9 IINSIIDKAALR-PTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPF-   86 (278)
T ss_dssp             HHHHHHHHTCCC-TTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCCC-
T ss_pred             HHHHHHHHhCCC-CCCEEEEECCCchHHHHHHHhcCCcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhhhh-
Confidence            345566665443 67799999999999999887   5899999876                25678999998876543 


Q ss_pred             CccEEEEcccc
Q 022592          189 SVDVAVFCLSL  199 (294)
Q Consensus       189 ~fD~Vi~~~~l  199 (294)
                       ++.||++...
T Consensus        87 -~~~vV~NLPY   96 (278)
T d1zq9a1          87 -FDTCVANLPY   96 (278)
T ss_dssp             -CSEEEEECCG
T ss_pred             -hhhhhcchHH
Confidence             4677776543

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=96.83  E-value=0.00028  Score=59.50  Aligned_cols=57  Identities=16%  Similarity=0.225  Sum_probs=45.0

Q ss_pred             HHHHHHHHhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccC-------------CCCcEEEccCCCCCC
Q 022592          128 PVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS-------------NDPSVIACDMSNTPL  185 (294)
Q Consensus       128 ~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~-------------~~~~~~~~d~~~lp~  185 (294)
                      .++.+++.+... ++..|||||||+|.++..|+   ..|+++|+.+             .++.++.+|+..+.+
T Consensus         9 ~~~~Iv~~~~~~-~~d~vlEIGpG~G~LT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~~~~~ii~~D~l~~~~   81 (252)
T d1qyra_           9 VIDSIVSAINPQ-KGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNF   81 (252)
T ss_dssp             HHHHHHHHHCCC-TTCCEEEECCTTTTTHHHHHTTCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCH
T ss_pred             HHHHHHHhcCCC-CCCEEEEECCCchHHHHHHHccCCceEEEEeccchhHHHHHHhhhccchhHHhhhhhhhcc
Confidence            345667776544 57789999999999999987   4899999886             457888999987654

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.57  E-value=0.0056  Score=52.30  Aligned_cols=57  Identities=16%  Similarity=0.194  Sum_probs=42.3

Q ss_pred             CCCCEEEEEcCcccHHHHHhc------cceEEEeccC---------------CCCcEEEccCCCCCCC---CCCccEEEE
Q 022592          140 SPSLVIADFGCGDARLAKSVK------NKVFSFDLVS---------------NDPSVIACDMSNTPLN---SSSVDVAVF  195 (294)
Q Consensus       140 ~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~---------------~~~~~~~~d~~~lp~~---~~~fD~Vi~  195 (294)
                      .++.+|||++||+|.=+..++      ..++++|++.               .++.+...|...++..   .+.||.|+.
T Consensus        93 ~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~~~~~~~fD~VL~  172 (293)
T d2b9ea1          93 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILL  172 (293)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEEE
T ss_pred             CccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhcccccccceeeEEee
Confidence            478899999999998665554      3799999987               3566777777665432   256999996


Q ss_pred             c
Q 022592          196 C  196 (294)
Q Consensus       196 ~  196 (294)
                      .
T Consensus       173 D  173 (293)
T d2b9ea1         173 D  173 (293)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.48  E-value=0.0044  Score=54.89  Aligned_cols=81  Identities=12%  Similarity=0.000  Sum_probs=57.0

Q ss_pred             CCCEEEEEcCcccHHHHHhc-----cceEEEeccCCC------------------------------CcEEEccCCCCC-
Q 022592          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVSND------------------------------PSVIACDMSNTP-  184 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~~~------------------------------~~~~~~d~~~lp-  184 (294)
                      .+.+|||..||+|..+...+     ..|+++|+|+..                              +.+...|+..+. 
T Consensus        45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~  124 (375)
T d2dula1          45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA  124 (375)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred             CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence            45699999999999887543     379999999821                              112223322111 


Q ss_pred             CCCCCccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEE
Q 022592          185 LNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIA  224 (294)
Q Consensus       185 ~~~~~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~  224 (294)
                      .....||+|....   +-.+..+|..+.+.++.||.|.++
T Consensus       125 ~~~~~fDvIDiDP---fGs~~pfldsAi~a~~~~Gll~vT  161 (375)
T d2dula1         125 ERHRYFHFIDLDP---FGSPMEFLDTALRSAKRRGILGVT  161 (375)
T ss_dssp             HSTTCEEEEEECC---SSCCHHHHHHHHHHEEEEEEEEEE
T ss_pred             hhcCcCCcccCCC---CCCcHHHHHHHHHHhccCCEEEEE
Confidence            1235699988653   236678999999999999999997

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=93.92  E-value=0.059  Score=44.34  Aligned_cols=81  Identities=21%  Similarity=0.182  Sum_probs=54.0

Q ss_pred             EEEccCCCC--CCCCCCccEEEEcccccC--------CC----HHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHH
Q 022592          175 VIACDMSNT--PLNSSSVDVAVFCLSLMG--------IN----FPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPN  240 (294)
Q Consensus       175 ~~~~d~~~l--p~~~~~fD~Vi~~~~l~~--------~~----~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~  240 (294)
                      |+++|..++  .++++++|+|+...-..-        .+    ....+.++.|+|+|+|.+++..-..............
T Consensus         7 ~~~~D~le~l~~l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~~~~~~~~~~~~~~~~   86 (279)
T d1eg2a_           7 YDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGLQYQGEAGSGDLIS   86 (279)
T ss_dssp             EEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECSCCCCCTTBCCHHH
T ss_pred             EEechHHHHHhhCcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEecCccccccccccchhh
Confidence            566777553  467899999998775421        12    2567889999999999999864322222222223445


Q ss_pred             HHHHHHHHCCCeEEE
Q 022592          241 KFSKAVCDLGFAPVS  255 (294)
Q Consensus       241 ~~~~~l~~~Gf~~~~  255 (294)
                      .+..++...||....
T Consensus        87 ~~~~~~~~~~~~~~~  101 (279)
T d1eg2a_          87 IISHMRQNSKMLLAN  101 (279)
T ss_dssp             HHHHHHHHCCCEEEE
T ss_pred             HHHHHHhccCceeee
Confidence            667788899998765

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=93.65  E-value=0.074  Score=42.06  Aligned_cols=87  Identities=21%  Similarity=0.168  Sum_probs=56.1

Q ss_pred             CCCCEEEEEcCcc-cHHHHHhc-----cceEEEeccCCC--------CcEEEccCCCCCC--------CCCCccEEEEcc
Q 022592          140 SPSLVIADFGCGD-ARLAKSVK-----NKVFSFDLVSND--------PSVIACDMSNTPL--------NSSSVDVAVFCL  197 (294)
Q Consensus       140 ~~~~~VLDiGcG~-G~~~~~l~-----~~v~gvD~s~~~--------~~~~~~d~~~lp~--------~~~~fD~Vi~~~  197 (294)
                      .++.+||-+|||. |.++..++     ..|+++|.++.+        ...+. +....++        ....+|+++-+-
T Consensus        24 ~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~~~-~~~~~~~~~~i~~~t~g~g~D~vid~v  102 (195)
T d1kola2          24 GPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIAD-LSLDTPLHEQIAALLGEPEVDCAVDAV  102 (195)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEE-TTSSSCHHHHHHHHHSSSCEEEEEECC
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccccEEE-eCCCcCHHHHHHHHhCCCCcEEEEECc
Confidence            4788999999997 44444443     379999998732        22222 1111111        134589988654


Q ss_pred             cccC----------CCHHHHHHHHHHhcCcCcEEEEEeec
Q 022592          198 SLMG----------INFPNYLQEAQRVLKPSGWLLIAEVK  227 (294)
Q Consensus       198 ~l~~----------~~~~~~l~el~r~LkpgG~l~i~e~~  227 (294)
                      ....          ......++.+.++++|||.+.++.+.
T Consensus       103 G~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~~  142 (195)
T d1kola2         103 GFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGLY  142 (195)
T ss_dssp             CTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSCC
T ss_pred             cccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeeec
Confidence            3221          23467999999999999999997643

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.63  E-value=0.02  Score=44.13  Aligned_cols=84  Identities=14%  Similarity=0.214  Sum_probs=51.3

Q ss_pred             CCCCEEEEEcCc-ccHHHHHhc----cceEEEeccCCCC---------cEEEc-cCCC-CCCCCCCccEEEEcccccCCC
Q 022592          140 SPSLVIADFGCG-DARLAKSVK----NKVFSFDLVSNDP---------SVIAC-DMSN-TPLNSSSVDVAVFCLSLMGIN  203 (294)
Q Consensus       140 ~~~~~VLDiGcG-~G~~~~~l~----~~v~gvD~s~~~~---------~~~~~-d~~~-lp~~~~~fD~Vi~~~~l~~~~  203 (294)
                      .++.+||-+|+| .|.++..++    .+|+++|.++.+.         .++.. +..+ .....+.+|+|+.+....+. 
T Consensus        26 ~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~~~~~-  104 (168)
T d1piwa2          26 GPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLTD-  104 (168)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCSTT-
T ss_pred             CCCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEEecCCcc-
Confidence            478899999998 344544444    4899999998532         22221 1111 11123569988875443321 


Q ss_pred             HHHHHHHHHHhcCcCcEEEEEee
Q 022592          204 FPNYLQEAQRVLKPSGWLLIAEV  226 (294)
Q Consensus       204 ~~~~l~el~r~LkpgG~l~i~e~  226 (294)
                        ..+..+.++|+|+|.++++.+
T Consensus       105 --~~~~~~~~~l~~~G~iv~~G~  125 (168)
T d1piwa2         105 --IDFNIMPKAMKVGGRIVSISI  125 (168)
T ss_dssp             --CCTTTGGGGEEEEEEEEECCC
T ss_pred             --chHHHHHHHhhccceEEEecc
Confidence              123457889999999999743

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=93.25  E-value=0.21  Score=37.90  Aligned_cols=83  Identities=10%  Similarity=0.106  Sum_probs=52.3

Q ss_pred             CCCCEEEEEcCcc-cHHHHHhc----cceEEEeccCCCC---------cEEEccCCCCC----------CCCCCccEEEE
Q 022592          140 SPSLVIADFGCGD-ARLAKSVK----NKVFSFDLVSNDP---------SVIACDMSNTP----------LNSSSVDVAVF  195 (294)
Q Consensus       140 ~~~~~VLDiGcG~-G~~~~~l~----~~v~gvD~s~~~~---------~~~~~d~~~lp----------~~~~~fD~Vi~  195 (294)
                      .++.+||-+|||. |.++..++    .+|+++|.++.+.         ..+..+.....          .....+|+|+-
T Consensus        25 ~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D~vid  104 (170)
T d1e3ja2          25 QLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTID  104 (170)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEEEE
T ss_pred             CCCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccccCCceeee
Confidence            3778999999984 44444443    4899999887322         12222211111          01245898875


Q ss_pred             cccccCCCHHHHHHHHHHhcCcCcEEEEEeec
Q 022592          196 CLSLMGINFPNYLQEAQRVLKPSGWLLIAEVK  227 (294)
Q Consensus       196 ~~~l~~~~~~~~l~el~r~LkpgG~l~i~e~~  227 (294)
                      +-.     -...+..+.++|+|+|.++++...
T Consensus       105 ~~g-----~~~~~~~a~~~~~~~G~iv~~G~~  131 (170)
T d1e3ja2         105 CSG-----NEKCITIGINITRTGGTLMLVGMG  131 (170)
T ss_dssp             CSC-----CHHHHHHHHHHSCTTCEEEECSCC
T ss_pred             cCC-----ChHHHHHHHHHHhcCCceEEEecC
Confidence            432     257889999999999999997543

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=92.23  E-value=0.12  Score=39.97  Aligned_cols=81  Identities=14%  Similarity=0.170  Sum_probs=50.5

Q ss_pred             CCCCEEEEEcCcc-cHHHHHhc-----cceEEEeccCCCCcE-------EEccCCCCC-----------CCCCCccEEEE
Q 022592          140 SPSLVIADFGCGD-ARLAKSVK-----NKVFSFDLVSNDPSV-------IACDMSNTP-----------LNSSSVDVAVF  195 (294)
Q Consensus       140 ~~~~~VLDiGcG~-G~~~~~l~-----~~v~gvD~s~~~~~~-------~~~d~~~lp-----------~~~~~fD~Vi~  195 (294)
                      .++.+||-+|||. |.++..++     ..|+++|.++.+.++       ...|..+..           .....+|+|+-
T Consensus        27 ~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~~g~Dvvid  106 (182)
T d1vj0a2          27 FAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFILE  106 (182)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTSCEEEEEE
T ss_pred             CCCCEEEEECCCccchhheecccccccccccccccccccccccccccceEEEeccccchHHHHHHHHHhhCCCCceEEee
Confidence            4778999999984 44444444     278999998732211       111222111           11235899885


Q ss_pred             cccccCCCHHHHHHHHHHhcCcCcEEEEEe
Q 022592          196 CLSLMGINFPNYLQEAQRVLKPSGWLLIAE  225 (294)
Q Consensus       196 ~~~l~~~~~~~~l~el~r~LkpgG~l~i~e  225 (294)
                      +-.-     ...+..+.++|+|||.++++.
T Consensus       107 ~vG~-----~~~~~~a~~~l~~~G~iv~~G  131 (182)
T d1vj0a2         107 ATGD-----SRALLEGSELLRRGGFYSVAG  131 (182)
T ss_dssp             CSSC-----TTHHHHHHHHEEEEEEEEECC
T ss_pred             cCCc-----hhHHHHHHHHhcCCCEEEEEe
Confidence            4321     456788899999999998864

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=92.21  E-value=0.095  Score=40.55  Aligned_cols=82  Identities=13%  Similarity=0.176  Sum_probs=52.1

Q ss_pred             CCCCEEEEEcCcc-cHHHHHhc-----cceEEEeccCCCC---------cEEEccCCCCC-----C-CCCCccEEEEccc
Q 022592          140 SPSLVIADFGCGD-ARLAKSVK-----NKVFSFDLVSNDP---------SVIACDMSNTP-----L-NSSSVDVAVFCLS  198 (294)
Q Consensus       140 ~~~~~VLDiGcG~-G~~~~~l~-----~~v~gvD~s~~~~---------~~~~~d~~~lp-----~-~~~~fD~Vi~~~~  198 (294)
                      .++.+||=+|||. |.++..++     ..|+++|.++.+.         +++...-.+..     . ....+|+|+-+-.
T Consensus        26 ~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~G~D~vid~~g  105 (174)
T d1jqba2          26 EMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKGVDRVIMAGG  105 (174)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEECGGGSCHHHHHHHHTTTSCEEEEEECSS
T ss_pred             CCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCccccccccchhHHHHHHHHhhccCcceEEEccC
Confidence            4777888899986 55555554     3799999987321         22211111110     1 1234899876543


Q ss_pred             ccCCCHHHHHHHHHHhcCcCcEEEEEee
Q 022592          199 LMGINFPNYLQEAQRVLKPSGWLLIAEV  226 (294)
Q Consensus       199 l~~~~~~~~l~el~r~LkpgG~l~i~e~  226 (294)
                      .     ...++...++|+|+|.++++.+
T Consensus       106 ~-----~~~~~~a~~~~~~~G~iv~~G~  128 (174)
T d1jqba2         106 G-----SETLSQAVKMVKPGGIISNINY  128 (174)
T ss_dssp             C-----TTHHHHHHHHEEEEEEEEECCC
T ss_pred             C-----HHHHHHHHHHHhcCCEEEEEee
Confidence            2     4577888999999999999743

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=91.71  E-value=0.039  Score=45.67  Aligned_cols=71  Identities=11%  Similarity=-0.058  Sum_probs=51.3

Q ss_pred             HHHHhhcc-CCCCEEEEEcCcccHHHHHhc---cceEEEeccC------------------------CCCcEEEccCCC-
Q 022592          132 IVKWLKDH-SPSLVIADFGCGDARLAKSVK---NKVFSFDLVS------------------------NDPSVIACDMSN-  182 (294)
Q Consensus       132 ~~~~l~~~-~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~------------------------~~~~~~~~d~~~-  182 (294)
                      +.+.+... ....+|||.-||.|..+..++   .+|++++-++                        .+++++.+|..+ 
T Consensus        78 l~kA~gl~~~~~~~VlD~TaGlG~Da~vlA~~G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~  157 (250)
T d2oyra1          78 VAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTA  157 (250)
T ss_dssp             HHHHTTCBTTBCCCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHH
T ss_pred             HHHHhcCCCCCCCEEEECCCcccHHHHHHHhCCCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHH
Confidence            44555433 122489999999999998887   5999999886                        156788888644 


Q ss_pred             CCCCCCCccEEEEcccccCC
Q 022592          183 TPLNSSSVDVAVFCLSLMGI  202 (294)
Q Consensus       183 lp~~~~~fD~Vi~~~~l~~~  202 (294)
                      +.-...+||+|+.-..+.+.
T Consensus       158 L~~~~~~~DvIYlDPMFp~~  177 (250)
T d2oyra1         158 LTDITPRPQVVYLDPMFPHK  177 (250)
T ss_dssp             STTCSSCCSEEEECCCCCCC
T ss_pred             HhccCCCCCEEEECCCCccc
Confidence            33335679999998888663

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=91.56  E-value=0.36  Score=37.05  Aligned_cols=81  Identities=19%  Similarity=0.215  Sum_probs=53.0

Q ss_pred             CCCCEEEEEcCcc-cHHHHHhc-----cceEEEeccCCCC---------cEEEccCCCCC-------CCCCCccEEEEcc
Q 022592          140 SPSLVIADFGCGD-ARLAKSVK-----NKVFSFDLVSNDP---------SVIACDMSNTP-------LNSSSVDVAVFCL  197 (294)
Q Consensus       140 ~~~~~VLDiGcG~-G~~~~~l~-----~~v~gvD~s~~~~---------~~~~~d~~~lp-------~~~~~fD~Vi~~~  197 (294)
                      .++..||=+|||. |.++..++     ..|+.+|.++.+.         .++...-.+..       .....+|+|+-+-
T Consensus        27 ~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~vie~~  106 (174)
T d1e3ia2          27 TPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDCA  106 (174)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEESS
T ss_pred             CCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcCCCcEEEEec
Confidence            4778999999997 66655554     3788999988432         12211111111       1134588887543


Q ss_pred             cccCCCHHHHHHHHHHhcCcC-cEEEEEe
Q 022592          198 SLMGINFPNYLQEAQRVLKPS-GWLLIAE  225 (294)
Q Consensus       198 ~l~~~~~~~~l~el~r~Lkpg-G~l~i~e  225 (294)
                      .     -...+.+..+.|+|| |.++++-
T Consensus       107 G-----~~~~~~~a~~~~~~g~G~~v~vG  130 (174)
T d1e3ia2         107 G-----TAQTLKAAVDCTVLGWGSCTVVG  130 (174)
T ss_dssp             C-----CHHHHHHHHHTBCTTTCEEEECC
T ss_pred             c-----cchHHHHHHHHhhcCCeEEEecC
Confidence            2     367899999999996 9999864

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=90.98  E-value=0.46  Score=39.37  Aligned_cols=112  Identities=11%  Similarity=0.081  Sum_probs=68.6

Q ss_pred             CEEEEEcCcccHHHHHhc----cceEEEeccC---------CCCcEEEccCCCCCCC-CCCccEEEEcccccC-------
Q 022592          143 LVIADFGCGDARLAKSVK----NKVFSFDLVS---------NDPSVIACDMSNTPLN-SSSVDVAVFCLSLMG-------  201 (294)
Q Consensus       143 ~~VLDiGcG~G~~~~~l~----~~v~gvD~s~---------~~~~~~~~d~~~lp~~-~~~fD~Vi~~~~l~~-------  201 (294)
                      ++|||+=||-|.+...+.    ..+.++|+.+         ....++.+|+.++... -..+|+++....-..       
T Consensus         1 mk~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~~~~~~N~~~~~~~~Di~~~~~~~~~~~dll~~g~PCq~fS~ag~~   80 (324)
T d1dcta_           1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHSAKLIKGDISKISSDEFPKCDGIIGGPPCQSWSEGGSL   80 (324)
T ss_dssp             CEEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHHHHHHHHCCSEEEESCTTTSCGGGSCCCSEEEECCCCTTTSSSSCC
T ss_pred             CeEEEeCcCcCHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCCCCCccCChhhCCHhHcccccEEeeccccccccccccc
Confidence            379999999999877664    3567999887         2345678899886532 235899986544432       


Q ss_pred             ---CCHH-HH---HHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEE
Q 022592          202 ---INFP-NY---LQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSK  256 (294)
Q Consensus       202 ---~~~~-~~---l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~  256 (294)
                         .+.. ..   +-++...++|.  +++.|=...+...........+...+...||.+...
T Consensus        81 ~g~~d~r~~l~~~~~~~i~~~~Pk--~~~lENV~~~~~~~~~~~~~~~l~~l~~lGY~v~~~  140 (324)
T d1dcta_          81 RGIDDPRGKLFYEYIRILKQKKPI--FFLAENVKGMMAQRHNKAVQEFIQEFDNAGYDVHII  140 (324)
T ss_dssp             CCSSSHHHHHHHHHHHHHHHHCCS--EEEEEEEGGGGSGGGHHHHHHHHHHHHHHHEEEEEE
T ss_pred             ccccccccchHHHHHHHHHhhCCc--eeeccccccccccccchhhHHHHhHHhhCCCcccee
Confidence               1222 22   23355667883  455553333322222224456677788889988773

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=90.75  E-value=0.11  Score=42.02  Aligned_cols=73  Identities=12%  Similarity=0.063  Sum_probs=49.9

Q ss_pred             cEEEccCCCC--CCCCCCccEEEEcccccC--------CC-------HHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCC
Q 022592          174 SVIACDMSNT--PLNSSSVDVAVFCLSLMG--------IN-------FPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGG  236 (294)
Q Consensus       174 ~~~~~d~~~l--p~~~~~fD~Vi~~~~l~~--------~~-------~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~  236 (294)
                      .++.+|+.++  .++++++|+|+...-..-        .+       ....+.++.|+|+|||.+++....         
T Consensus         6 ~i~~gDcle~l~~lpd~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~~~~---------   76 (256)
T d1g60a_           6 KIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFNTP---------   76 (256)
T ss_dssp             SEEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEECH---------
T ss_pred             EEEeccHHHHHhhCcCCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCcccccccCc---------
Confidence            3567777552  367899999998765421        11       235788999999999988865311         


Q ss_pred             CCHHHHHHHHHHCCCeEEE
Q 022592          237 ADPNKFSKAVCDLGFAPVS  255 (294)
Q Consensus       237 ~~~~~~~~~l~~~Gf~~~~  255 (294)
                      .....+...+...||....
T Consensus        77 ~~~~~~~~~~~~~g~~~~~   95 (256)
T d1g60a_          77 FNCAFICQYLVSKGMIFQN   95 (256)
T ss_dssp             HHHHHHHHHHHHTTCEEEE
T ss_pred             hhhhhhhhhhhcccceeee
Confidence            1234567788999998654

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.26  E-value=0.17  Score=43.12  Aligned_cols=54  Identities=15%  Similarity=0.036  Sum_probs=39.2

Q ss_pred             HHHHHHHhhcc-----CCCCEEEEEcCcccHHHHHhc-----cceEEEeccC------------CCCcEEEccCCC
Q 022592          129 VNIIVKWLKDH-----SPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS------------NDPSVIACDMSN  182 (294)
Q Consensus       129 ~~~~~~~l~~~-----~~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~------------~~~~~~~~d~~~  182 (294)
                      .+.+++.+...     ..+..|||||.|.|.++..|.     .+|+++++.+            .++.++.+|+..
T Consensus        26 ~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~~~~~~ii~~D~l~  101 (322)
T d1i4wa_          26 YNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYD  101 (322)
T ss_dssp             HHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTC
T ss_pred             HHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccCCCcEEEeCchhh
Confidence            44555554321     245689999999999998885     2699999875            467888888764

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.05  E-value=0.3  Score=37.19  Aligned_cols=79  Identities=11%  Similarity=0.170  Sum_probs=51.4

Q ss_pred             CCCCEEEEEcC--cccHHHHHhc----cceEEEeccCCC--------CcEEEccCCCCC--------CCCCCccEEEEcc
Q 022592          140 SPSLVIADFGC--GDARLAKSVK----NKVFSFDLVSND--------PSVIACDMSNTP--------LNSSSVDVAVFCL  197 (294)
Q Consensus       140 ~~~~~VLDiGc--G~G~~~~~l~----~~v~gvD~s~~~--------~~~~~~d~~~lp--------~~~~~fD~Vi~~~  197 (294)
                      .++.+||-.|+  |.|..+..++    .+|++++-++..        ...+ .|..+..        .....+|+|+.+.
T Consensus        27 ~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~Ga~~v-i~~~~~~~~~~i~~~t~~~g~d~v~d~~  105 (174)
T d1yb5a2          27 KAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAHEV-FNHREVNYIDKIKKYVGEKGIDIIIEML  105 (174)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEE-EETTSTTHHHHHHHHHCTTCEEEEEESC
T ss_pred             CCCCEEEEEeccccccccccccccccCcccccccccccccccccccCcccc-cccccccHHHHhhhhhccCCceEEeecc
Confidence            47789999997  3445555554    478888876621        1111 1222211        1235699988764


Q ss_pred             cccCCCHHHHHHHHHHhcCcCcEEEEEe
Q 022592          198 SLMGINFPNYLQEAQRVLKPSGWLLIAE  225 (294)
Q Consensus       198 ~l~~~~~~~~l~el~r~LkpgG~l~i~e  225 (294)
                      .      ...+....++|+|+|.++.+.
T Consensus       106 g------~~~~~~~~~~l~~~G~iv~~G  127 (174)
T d1yb5a2         106 A------NVNLSKDLSLLSHGGRVIVVG  127 (174)
T ss_dssp             H------HHHHHHHHHHEEEEEEEEECC
T ss_pred             c------HHHHHHHHhccCCCCEEEEEe
Confidence            4      567888999999999999863

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=90.02  E-value=0.49  Score=39.58  Aligned_cols=113  Identities=12%  Similarity=0.124  Sum_probs=68.1

Q ss_pred             CCCEEEEEcCcccHHHHHhc----cceEEEeccCC--------CCcEEEccCCCCCCC-CCCccEEEEcccccCC-----
Q 022592          141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVSN--------DPSVIACDMSNTPLN-SSSVDVAVFCLSLMGI-----  202 (294)
Q Consensus       141 ~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~~--------~~~~~~~d~~~lp~~-~~~fD~Vi~~~~l~~~-----  202 (294)
                      .+.+|||+=||-|.+...|.    ..+.++|+.+.        ..+...+|+.++... -..+|+++....-..+     
T Consensus        10 ~~lrv~~lFsG~Gg~~~gl~~aG~~~v~a~e~d~~a~~~~~~N~~~~~~~Di~~~~~~~~~~~Dll~ggpPCq~fS~ag~   89 (327)
T d2c7pa1          10 TGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEKPEGDITQVNEKTIPDHDILCAGFPCQAFSISGK   89 (327)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSCCCBSCGGGSCGGGSCCCSEEEEECCCTTTCTTSC
T ss_pred             CCCeEEEECccccHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHCCCCCcCchhcCchhhcceeeeeecccccchhhhhhh
Confidence            46799999999999877775    25678898871        112335777665422 2358999875543321     


Q ss_pred             -----C----HHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEE
Q 022592          203 -----N----FPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVS  255 (294)
Q Consensus       203 -----~----~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~  255 (294)
                           +    .-..+-++.+.++|.  +++.|=...+...........+...|+..||.+..
T Consensus        90 ~~g~~d~r~~l~~~~~~~i~~~kP~--~~~lENV~~~~~~~~~~~~~~i~~~l~~lGY~~~~  149 (327)
T d2c7pa1          90 QKGFEDSRGTLFFDIARIVREKKPK--VVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHA  149 (327)
T ss_dssp             CCGGGSTTSCHHHHHHHHHHHHCCS--EEEEEEEGGGGTGGGGHHHHHHHHHHHHTTBCCEE
T ss_pred             hcCCcccchhHHHHHHHHHhccCCc--EEecccchhhhhhccchhhHHhhhHHHhcCCccee
Confidence                 1    222333455667884  44544333322222222446778899999998876

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=89.57  E-value=0.59  Score=35.18  Aligned_cols=82  Identities=17%  Similarity=0.242  Sum_probs=51.1

Q ss_pred             CCCCEEEEEcCc--ccHHHHHhc-----cceEEEeccCCC--------C-cEEEccCCCCC------CCCCCccEEEEcc
Q 022592          140 SPSLVIADFGCG--DARLAKSVK-----NKVFSFDLVSND--------P-SVIACDMSNTP------LNSSSVDVAVFCL  197 (294)
Q Consensus       140 ~~~~~VLDiGcG--~G~~~~~l~-----~~v~gvD~s~~~--------~-~~~~~d~~~lp------~~~~~fD~Vi~~~  197 (294)
                      .++.+||=+||+  .|.++..++     ..|+++|.++.+        . .++..+-.+..      .....||+|+-+.
T Consensus        26 ~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~~d~vid~~  105 (170)
T d1jvba2          26 DPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVIDLN  105 (170)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESC
T ss_pred             CCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCceeeccCCcCHHHHHHHHhhcccchhhhccc
Confidence            477899999974  334444333     378899988732        1 22222211110      1134589888654


Q ss_pred             cccCCCHHHHHHHHHHhcCcCcEEEEEee
Q 022592          198 SLMGINFPNYLQEAQRVLKPSGWLLIAEV  226 (294)
Q Consensus       198 ~l~~~~~~~~l~el~r~LkpgG~l~i~e~  226 (294)
                      .     -...++.+.++|+|||.++++.+
T Consensus       106 g-----~~~~~~~a~~~l~~~G~iv~~G~  129 (170)
T d1jvba2         106 N-----SEKTLSVYPKALAKQGKYVMVGL  129 (170)
T ss_dssp             C-----CHHHHTTGGGGEEEEEEEEECCS
T ss_pred             c-----cchHHHhhhhhcccCCEEEEecc
Confidence            3     25677888999999999998753

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=88.43  E-value=1.1  Score=33.78  Aligned_cols=82  Identities=18%  Similarity=0.207  Sum_probs=51.1

Q ss_pred             CCCCEEEEEcCcccHH-HHHhc-----cceEEEeccCC---------CCcEEEccCCCCC-----CCCCCccEEEEcccc
Q 022592          140 SPSLVIADFGCGDARL-AKSVK-----NKVFSFDLVSN---------DPSVIACDMSNTP-----LNSSSVDVAVFCLSL  199 (294)
Q Consensus       140 ~~~~~VLDiGcG~G~~-~~~l~-----~~v~gvD~s~~---------~~~~~~~d~~~lp-----~~~~~fD~Vi~~~~l  199 (294)
                      .++..||=+|+|.... +..++     ..++++|.++.         ..+++..+-....     .....+|+|+-+.. 
T Consensus        31 ~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~g~d~vid~~g-  109 (172)
T d1h2ba2          31 YPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVAMDFVG-  109 (172)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEEEEESSC-
T ss_pred             CCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccceeecCcccHHHHHHHhhCCCCceEEEEecC-
Confidence            4778999999986543 33332     37788898862         1223222111110     11235888886543 


Q ss_pred             cCCCHHHHHHHHHHhcCcCcEEEEEee
Q 022592          200 MGINFPNYLQEAQRVLKPSGWLLIAEV  226 (294)
Q Consensus       200 ~~~~~~~~l~el~r~LkpgG~l~i~e~  226 (294)
                          -...+....++|++||.++++.+
T Consensus       110 ----~~~~~~~a~~~l~~~G~iv~~G~  132 (172)
T d1h2ba2         110 ----SQATVDYTPYLLGRMGRLIIVGY  132 (172)
T ss_dssp             ----CHHHHHHGGGGEEEEEEEEECCC
T ss_pred             ----cchHHHHHHHHHhCCCEEEEEeC
Confidence                25678999999999999999754

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.65  E-value=1.2  Score=33.54  Aligned_cols=83  Identities=13%  Similarity=0.172  Sum_probs=52.0

Q ss_pred             CCCCEEEEEcCcccHH-HHHhc-----cceEEEeccCCC--------CcEEEc-cCCCCC--------CCCCCccEEEEc
Q 022592          140 SPSLVIADFGCGDARL-AKSVK-----NKVFSFDLVSND--------PSVIAC-DMSNTP--------LNSSSVDVAVFC  196 (294)
Q Consensus       140 ~~~~~VLDiGcG~G~~-~~~l~-----~~v~gvD~s~~~--------~~~~~~-d~~~lp--------~~~~~fD~Vi~~  196 (294)
                      .++..||=+|||.... +..++     ..|+++|.++.+        ...+.. +-.+..        -....+|+|+-+
T Consensus        25 ~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvid~  104 (171)
T d1pl8a2          25 TLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIEC  104 (171)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEEC
T ss_pred             CCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCceEEEec
Confidence            3678999999986543 33332     379999988732        222221 111110        012358888764


Q ss_pred             ccccCCCHHHHHHHHHHhcCcCcEEEEEeec
Q 022592          197 LSLMGINFPNYLQEAQRVLKPSGWLLIAEVK  227 (294)
Q Consensus       197 ~~l~~~~~~~~l~el~r~LkpgG~l~i~e~~  227 (294)
                      -.     -...++.+..++++||.+++....
T Consensus       105 ~G-----~~~~~~~a~~~~~~gG~iv~~G~~  130 (171)
T d1pl8a2         105 TG-----AEASIQAGIYATRSGGTLVLVGLG  130 (171)
T ss_dssp             SC-----CHHHHHHHHHHSCTTCEEEECSCC
T ss_pred             cC-----CchhHHHHHHHhcCCCEEEEEecC
Confidence            33     267889999999999999997543

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=86.71  E-value=0.83  Score=34.65  Aligned_cols=82  Identities=17%  Similarity=0.291  Sum_probs=51.3

Q ss_pred             CCCCEEEEEcCcccH-HHHHhc-----cceEEEeccCC---------CCcEEEccCCCC-----CCCCCCccEEEEcccc
Q 022592          140 SPSLVIADFGCGDAR-LAKSVK-----NKVFSFDLVSN---------DPSVIACDMSNT-----PLNSSSVDVAVFCLSL  199 (294)
Q Consensus       140 ~~~~~VLDiGcG~G~-~~~~l~-----~~v~gvD~s~~---------~~~~~~~d~~~l-----p~~~~~fD~Vi~~~~l  199 (294)
                      .++.+||=+|||.-. .+..++     ..++.+|.++.         ..+++..+-.++     .+.++.+|+|+-+-. 
T Consensus        27 ~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~i~~~t~gg~D~vid~~G-  105 (174)
T d1f8fa2          27 TPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALESTG-  105 (174)
T ss_dssp             CTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEECSC-
T ss_pred             CCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHcCCCCcEEEEcCC-
Confidence            477899999998533 233332     36678888772         123332222111     122456899885432 


Q ss_pred             cCCCHHHHHHHHHHhcCcCcEEEEEee
Q 022592          200 MGINFPNYLQEAQRVLKPSGWLLIAEV  226 (294)
Q Consensus       200 ~~~~~~~~l~el~r~LkpgG~l~i~e~  226 (294)
                          -...+..+.++++|+|.++++..
T Consensus       106 ----~~~~~~~~~~~~~~~G~i~~~G~  128 (174)
T d1f8fa2         106 ----SPEILKQGVDALGILGKIAVVGA  128 (174)
T ss_dssp             ----CHHHHHHHHHTEEEEEEEEECCC
T ss_pred             ----cHHHHHHHHhcccCceEEEEEee
Confidence                26788899999999999998653

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=86.28  E-value=0.74  Score=34.46  Aligned_cols=80  Identities=15%  Similarity=0.128  Sum_probs=47.2

Q ss_pred             CCCCEEEEEcCccc-HHHHHhc----cceEEEeccCCCC---------cEEEccCCCCC-----CCCCCccEEEEccccc
Q 022592          140 SPSLVIADFGCGDA-RLAKSVK----NKVFSFDLVSNDP---------SVIACDMSNTP-----LNSSSVDVAVFCLSLM  200 (294)
Q Consensus       140 ~~~~~VLDiGcG~G-~~~~~l~----~~v~gvD~s~~~~---------~~~~~d~~~lp-----~~~~~fD~Vi~~~~l~  200 (294)
                      .++.+||=+|||.- .++..++    .+|+++|.++.+.         .++...-.+..     ...+.+|.|++...  
T Consensus        26 ~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~~~~i~~~~~--  103 (166)
T d1llua2          26 RPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKLGASLTVNARQEDPVEAIQRDIGGAHGVLVTAVS--  103 (166)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEECCSC--
T ss_pred             CCCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhccCccccccccchhHHHHHHHhhcCCccccccccc--
Confidence            36778888998753 3333333    4899999887321         22222111110     11222344444333  


Q ss_pred             CCCHHHHHHHHHHhcCcCcEEEEEe
Q 022592          201 GINFPNYLQEAQRVLKPSGWLLIAE  225 (294)
Q Consensus       201 ~~~~~~~l~el~r~LkpgG~l~i~e  225 (294)
                          ...+....++|+|||.++++.
T Consensus       104 ----~~~~~~~~~~l~~~G~iv~~G  124 (166)
T d1llua2         104 ----NSAFGQAIGMARRGGTIALVG  124 (166)
T ss_dssp             ----HHHHHHHHTTEEEEEEEEECC
T ss_pred             ----chHHHHHHHHhcCCcEEEEEE
Confidence                567888999999999999864

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.87  E-value=0.99  Score=37.58  Aligned_cols=108  Identities=14%  Similarity=0.221  Sum_probs=65.2

Q ss_pred             CEEEEEcCcccHHHHHhc--c----ceEEEeccC----------CCCcEEEccCCCCCC---CCCCccEEEEcccccCC-
Q 022592          143 LVIADFGCGDARLAKSVK--N----KVFSFDLVS----------NDPSVIACDMSNTPL---NSSSVDVAVFCLSLMGI-  202 (294)
Q Consensus       143 ~~VLDiGcG~G~~~~~l~--~----~v~gvD~s~----------~~~~~~~~d~~~lp~---~~~~fD~Vi~~~~l~~~-  202 (294)
                      .+|+|+-||.|.+...+.  .    .+.++|+.+          +...++..|+.++..   +...+|+++....-..+ 
T Consensus         3 ~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~~~~~~~~~di~~~~~~~~~~~~~Dll~ggpPCq~fS   82 (343)
T d1g55a_           3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMSPPCQPFT   82 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECSCGGGCCHHHHHHHCCSEEEECCC-----
T ss_pred             CEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHCCCCCcccCchhhCCHhHcCCCCccEEEeeccccccc
Confidence            589999999998776663  2    367889877          345677788876542   22358999875554321 


Q ss_pred             ---------C-HHHHHHHHHHhc-----CcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEE
Q 022592          203 ---------N-FPNYLQEAQRVL-----KPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVS  255 (294)
Q Consensus       203 ---------~-~~~~l~el~r~L-----kpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~  255 (294)
                               + ...++.++.+++     +|  .+++.|=...+...   ...+.+.+.|++.||.+..
T Consensus        83 ~ag~~~~~~d~r~~l~~~~~~~i~~~~~kP--k~~i~ENV~~l~~~---~~~~~i~~~l~~~GY~v~~  145 (343)
T d1g55a_          83 RIGRQGDMTDSRTNSFLHILDILPRLQKLP--KYILLENVKGFEVS---STRDLLIQTIENCGFQYQE  145 (343)
T ss_dssp             -------------CHHHHHHHHGGGCSSCC--SEEEEEEETTGGGS---HHHHHHHHHHHHTTEEEEE
T ss_pred             ccccccccccccccccchhhhhHhhhcCCC--ceeeeeccCCcccc---hhhHHHHhhhhccccccce
Confidence                     1 223444455544     45  34555533322111   1346788999999998877

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=82.77  E-value=0.51  Score=38.97  Aligned_cols=43  Identities=16%  Similarity=0.262  Sum_probs=32.6

Q ss_pred             cHHHHHHHHhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccCC
Q 022592          127 LPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVSN  171 (294)
Q Consensus       127 ~~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~~  171 (294)
                      ..++.++....  .++..|||.=||+|..+.+..   ...+|+|+++.
T Consensus       238 ~L~~rlI~~~s--~~gdiVlDpF~GSGTT~~AA~~lgR~~Ig~El~~~  283 (320)
T d1booa_         238 KLPEFFIRMLT--EPDDLVVDIFGGSNTTGLVAERESRKWISFEMKPE  283 (320)
T ss_dssp             HHHHHHHHHHC--CTTCEEEETTCTTCHHHHHHHHTTCEEEEEESCHH
T ss_pred             HHHHHhhhhcc--cCCCEEEecCCCCcHHHHHHHHcCCcEEEEeCCHH
Confidence            44555555443  477899999999999877665   58999999984

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=82.36  E-value=1.3  Score=32.78  Aligned_cols=80  Identities=14%  Similarity=0.174  Sum_probs=47.7

Q ss_pred             CCCCEEEEEcCcccHHH-HHhc----cceEEEeccCCC--------CcEEEccCCCCC------CCCCCccEEEEccccc
Q 022592          140 SPSLVIADFGCGDARLA-KSVK----NKVFSFDLVSND--------PSVIACDMSNTP------LNSSSVDVAVFCLSLM  200 (294)
Q Consensus       140 ~~~~~VLDiGcG~G~~~-~~l~----~~v~gvD~s~~~--------~~~~~~d~~~lp------~~~~~fD~Vi~~~~l~  200 (294)
                      .++.+||=+|||+-.++ ..++    .+|+++|.++.+        ...+........      ...+.+|+|+...+  
T Consensus        26 ~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--  103 (168)
T d1rjwa2          26 KPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAVS--  103 (168)
T ss_dssp             CTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEESSCC--
T ss_pred             CCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhcCcceecccccchhhhhcccccCCCceEEeecCC--
Confidence            37788999999875432 2222    478999887732        222222111110      11233444433222  


Q ss_pred             CCCHHHHHHHHHHhcCcCcEEEEEe
Q 022592          201 GINFPNYLQEAQRVLKPSGWLLIAE  225 (294)
Q Consensus       201 ~~~~~~~l~el~r~LkpgG~l~i~e  225 (294)
                          ...+....++|+|||.+++..
T Consensus       104 ----~~~~~~a~~~l~~~G~i~~~g  124 (168)
T d1rjwa2         104 ----KPAFQSAYNSIRRGGACVLVG  124 (168)
T ss_dssp             ----HHHHHHHHHHEEEEEEEEECC
T ss_pred             ----HHHHHHHHHHhccCCceEecc
Confidence                677899999999999999974

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=81.19  E-value=0.57  Score=35.35  Aligned_cols=82  Identities=16%  Similarity=0.264  Sum_probs=49.2

Q ss_pred             CCCCEEEEEcCcc-cHHHHHhc----cceEEEeccCCCCcE-------EEccCCC---CCCCCCCccEEEEcccccCCCH
Q 022592          140 SPSLVIADFGCGD-ARLAKSVK----NKVFSFDLVSNDPSV-------IACDMSN---TPLNSSSVDVAVFCLSLMGINF  204 (294)
Q Consensus       140 ~~~~~VLDiGcG~-G~~~~~l~----~~v~gvD~s~~~~~~-------~~~d~~~---lp~~~~~fD~Vi~~~~l~~~~~  204 (294)
                      .++.+||=+|||. |.++..++    ..++++|.++.+.++       ...|..+   .......+|+|+-+-.-     
T Consensus        29 ~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid~~g~-----  103 (168)
T d1uufa2          29 GPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAA-----  103 (168)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSS-----
T ss_pred             CCCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhccCCcEEEECchhhHHHHhcCCCceeeeeeec-----
Confidence            4788999999874 44444443    377788877743211       0111111   11122468988865432     


Q ss_pred             HHHHHHHHHhcCcCcEEEEEee
Q 022592          205 PNYLQEAQRVLKPSGWLLIAEV  226 (294)
Q Consensus       205 ~~~l~el~r~LkpgG~l~i~e~  226 (294)
                      ...+....++|+|+|.++++..
T Consensus       104 ~~~~~~~~~~l~~~G~iv~~G~  125 (168)
T d1uufa2         104 PHNLDDFTTLLKRDGTMTLVGA  125 (168)
T ss_dssp             CCCHHHHHTTEEEEEEEEECCC
T ss_pred             chhHHHHHHHHhcCCEEEEecc
Confidence            2346677889999999999643