Citrus Sinensis ID: 022596

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290----
Protein Sequence
MRMNPPADAAETSPLLAHSLPDHLIRSRRLLRRPPPPLRGAAARLLRRASGRRLMLREPSVRVRETAAEQLEERQSYWAYSRPIIVLDVLWNLVFVIVAFAVLGVSINEKPEVPLRLRIVGYALQCLFHVFCVSLEFKRRRRGEGVVFGDSVSGSSSTTVTGDEEERFHGENDSSVAKNLESANTFLSFLWWIVGFYWITASGETLISCSPQLYWLCVTFLAFDVVFVMICVGVACLIGIAVCCCLPCILGILYALTEREGATEEEIDRLPKFKFSRIDGLEKVNGVLHLPFCL
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccHHHHHHHHHHHHHHccccccccEEEHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHEEEEEHHcccccccccccccccccccccccHHHHccccccHHHHHHHHHHHHHHHHHHHHHHEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHccccccHHHHHcccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHcccccccccEHHHHHHHHHHHHHHHHHHHHHcccccccccHEEEEEEHHHHHEEEEEEEEEEHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHcccEEEEEccccccccccccccccc
Coil and Loop (DISEMBL)
mrmnppadaaetspllahslpdhlirsrrllrrpppplRGAAARLLRRASGrrlmlrepsvRVRETAAEQLEERQsywaysrpiIVLDVLWNLVFVIVAFAVLGvsinekpevplRLRIVGYALQCLFHVFCVslefkrrrrgegvvfgdsvsgsssttvtgdeeerfhgendssVAKNLESANTFLSFLWWIVGFYWITAsgetliscspqLYWLCVTFLAFDVVFVMICVGVACLIGIAVCCCLPCILGILYAlteregateeeidrlpkfkfsridglekvngvlhlpfcl
Flexible Loop (DISEMBL)
mrmnppadaaetspllahSLPDHLIrsrrllrrpppplrgAAARLlrrasgrrlmlrepsvrvrETAAEQLeerqsywaysRPIIVLDVLWNLVFVIVAFAVLGVSINEKPEVPLRLRIVGYALQCLFHVFCVSLEFKRRRRGegvvfgdsvsgsssttvtgdeeerfhgendssVAKNLESANTFLSFLWWIVGFYWITASGETLISCSPQLYWLCVTFLAFDVVFVMICVGVACLIGIAVCCCLPCILGILYALTEREGATeeeidrlpkfkfsridglekvngvlhlpfcl
Low Complexity Region (SEG)
MRMNPPADAAETSPLLAHSLPDHLIrsrrllrrpppplrgaaarllrrasgrrlmlrEPSVRVRETAAEQLEERQSYWAYSRPIIVLDVLWNLVFVIVAFAVLGVSINEKPEVPLRLRIVGYALQCLFHVFCVSLEFKRRRRgegvvfgdsvsgsssttvtgdeeeRFHGENDSSVAKNLESANTFLSFLWWIVGFYWITASGETLISCSPQLYWLCVTFLAFDVVFVMICVGVACLIGIAVCCCLPCILGILYALTEREGATEEEIDRLPKFKFSRIDGLEKVNGVLHLPFCL
Disordered region (IsUnstruct)
**************************************************************************QSYWAYSRPIIVLDVLWNLVFVIVAFAVLGVSINEKPEVPLRLRIVGYALQCLFHVFCVSLEFKRRRRGEGVVF**********************************ANTFLSFLWWIVGFYWITASGETLISCSPQLYWLCVTFLAFDVVFVMICVGVACLIGIAVCCCLPCILGILYALTEREGATEEEIDRLPKFKFSRIDGLEKVNGVLHLPFC*
Disordered Region (DISOPRED)
******************************************************************************AYSRPIIVLDVLWNLVFVIVAFAVLGVSINEKPEVPLRLRIVGYALQCLFHVFCVSLEFK****************************************NLESANTFLSFLWWIVGFYWITASGETLISCSPQLYWLCVTFLAFDVVFVMICVGVACLIGIAVCCCLPCILGILYAL**********IDRLPKF***************HLPFCL
Disordered Region (DISEMBL)
***********TSPLLAHSLPDHLIRSRRLLRRPPPPLRGAAARLLRRASGRRLMLREPSVRVRETAAEQLEERQSYWAYSRPIIVLDVLWNLVFVIVAFAVLGVSINEKPEVPLRLRIVGYALQCLFHVFCVSLEFKRRRRGEGVVFG**************************VAKNLESANTFLSFLWWIVGFYWITASGETLISCSPQLYWLCVTFLAFDVVFVMICVGVACLIGIAVCCCLPCILGILYALTEREGATEEEIDRLPKFKFSRIDGLEKVNGVLHLPFCL
Disordered Region (DISPRO)
*************************************************************RV*E*******ERQSYWAYSRPIIVLDVLWNLVFVIVAFAVLGVSINEKPEVPLRLRIVGYALQCLFHVFCVSLEFKRRRR******************************DSSVAKNLESANTFLSFLWWIVGFYWITASGETLISCSPQLYWLCVTFLAFDVVFVMICVGVACLIGIAVCCCLPCILGILYALTEREGATEEEIDRLPKFKFSRID***************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRMNPPADAAETSPLLAHSLPDHLIRSRRLLRRPPPPLRGAAARLLRRASGRRLMLREPSVRVRETAAEQLEERQSYWAYSRPIIVLDVLWNLVFVIVAFAVLGVSINEKPEVPLRLRIVGYALQCLFHVFCVSLEFKRRRRGEGVVFGDSVSGSSSTTVTGDEEERFHGENDSSVAKNLESANTFLSFLWWIVGFYWITASGETLISCSPQLYWLCVTFLAFDVVFVMICVGVACLIGIAVCCCLPCILGILYALTEREGATEEEIDRLPKFKFSRIDGLEKVNGVLHLPFCL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	294	2.2.26 [Sep-21-2011]
Q93Z92	390	E3 ubiquitin-protein liga	no	no	0.914	0.689	0.519	5e-69
Q8LDB8	381	E3 ubiquitin-protein liga	no	no	0.802	0.619	0.543	2e-60
Q9LN71	408	E3 ubiquitin-protein liga	no	no	0.857	0.617	0.492	3e-59
Q8GUU2	359	E3 ubiquitin protein liga	no	no	0.812	0.665	0.432	3e-52

>sp|Q93Z92|RING4_ARATH E3 ubiquitin-protein ligase At4g11680 OS=Arabidopsis thaliana GN=At4g11680 PE=2 SV=1

 Score =  261 bits (667), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 148/285 (51%), Positives = 197/285 (69%), Gaps = 16/285 (5%)

Query: 6   PADAAETSPLLAHSLPDHLIRSRRLLRRPPPPLRGAAARLLRRASGRRLMLREPSVRVRE 65
           P     T  +   S P H    R+ LR         AAR LR A  RR+M REPS+ VRE
Sbjct: 40  PPTVTRTISVDEESNPIHRSARRQGLRE--------AARFLRHAGSRRMM-REPSMLVRE 90

Query: 66  TAAEQLEERQSYWAYSRPIIVLDVLWNLVFVIVAFAVLGVSINEKPEVPLRLRIVGYALQ 125
           TAAEQLEERQS WAYS+P++ LD+LWNL FV +  AVL +S +EKP +PLR+ +VGY +Q
Sbjct: 91  TAAEQLEERQSDWAYSKPVVFLDILWNLAFVAIGVAVLILSRDEKPNMPLRVWVVGYGIQ 150

Query: 126 CLFHVFCVSLEFKRRRRG----EGVVFGDSVSGSSSTTVTGDEEERFHGENDSSVAKNLE 181
           C  H+ CV +E++RRRR     +G   G + S S         E+R  GE  S+ AK+LE
Sbjct: 151 CWLHMACVCVEYRRRRRRRHPEDGGGSGLTNSSSQQYVSLAQLEDR--GET-SNPAKHLE 207

Query: 182 SANTFLSFLWWIVGFYWITASGETLISCSPQLYWLCVTFLAFDVVFVMICVGVACLIGIA 241
           SANT  SF+WWI+GFYW++A G+TL S SPQLYWLC+ FL FDV FV+ CV +AC+IG+A
Sbjct: 208 SANTMFSFIWWIIGFYWVSAGGQTLSSDSPQLYWLCIIFLGFDVFFVVFCVALACVIGLA 267

Query: 242 VCCCLPCILGILYALTEREGATEEEIDRLPKFKFSRIDGLEKVNG 286
           VCCCLPCI+ ILYA+ ++EGA++ +ID++PKF+F++   +EK++G
Sbjct: 268 VCCCLPCIIAILYAVADQEGASKNDIDQMPKFRFTKTGNVEKLSG 312

Mediates E2-dependent protein ubiquitination in vitro.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q8LDB8|RING2_ARATH E3 ubiquitin-protein ligase At1g63170 OS=Arabidopsis thaliana GN=At1g63170 PE=2 SV=2

 Score =  232 bits (592), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 138/254 (54%), Positives = 184/254 (72%), Gaps = 18/254 (7%)

Query: 42  AARLLRRASGRRLMLREPSVRVRETAAEQLEERQSYWAYSRPIIVLDVLWNLVFVIVAFA 101
           AARLLR AS  R+M+REPS+ VRE AAEQLEERQS WAYS+P++VLD +WNL FV+VA A
Sbjct: 32  AARLLRHASSGRMMMREPSMLVREAAAEQLEERQSDWAYSKPVVVLDFVWNLAFVVVATA 91

Query: 102 VLGVSINEKPEVPLRLRIVGYALQCLFHVFCVSLEFKRRRRGEGVVFGDSVSGSSSTTVT 161
           VL +S +E P +PLR+ I+GY LQC+ H+ CV +E++RR            S SSS++ +
Sbjct: 92  VLVLSSDENPNMPLRVWIIGYGLQCMMHMVCVCVEYRRRNSRRRRDLSPRSSSSSSSSSS 151

Query: 162 G-DEEE----------------RFHGENDSSVAKNLESANTFLSFLWWIVGFYWITASGE 204
             DEEE                +   EN+S  AK+LESANT +SF+WW++GFYW+++ G+
Sbjct: 152 SMDEEEGLGLSRNSDERYLELGQLENENNS-FAKHLESANTMISFIWWVIGFYWVSSGGQ 210

Query: 205 TLISCSPQLYWLCVTFLAFDVVFVMICVGVACLIGIAVCCCLPCILGILYALTEREGATE 264
            L   SPQLYWLC+ FL FDV FV+ CV +AC+IGIAVCCCLPCI+ +LYA+ E+EGA++
Sbjct: 211 ELAQGSPQLYWLCIVFLGFDVFFVVFCVALACVIGIAVCCCLPCIIAVLYAVAEQEGASK 270

Query: 265 EEIDRLPKFKFSRI 278
           E+ID+L KFKF ++
Sbjct: 271 EDIDQLTKFKFRKV 284

Mediates E2-dependent protein ubiquitination.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9LN71|RING1_ARATH E3 ubiquitin-protein ligase At1g12760 OS=Arabidopsis thaliana GN=At1g12760 PE=2 SV=1

 Score =  228 bits (582), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 136/276 (49%), Positives = 181/276 (65%), Gaps = 24/276 (8%)

Query: 28  RRLLRRPPPPLRGAAARLLRRASGRRLMLREPSVRVRETAAEQLEERQSYWAYSRPIIVL 87
           RR +RR    LR  AAR L RAS  R+M REPS+ VRE AAEQLEERQS WAYS+P++VL
Sbjct: 48  RRSVRRQG--LR-EAARFLSRASSGRVM-REPSMLVREAAAEQLEERQSDWAYSKPVVVL 103

Query: 88  DVLWNLVFVIVAFAVLGVSINEKPEVPLRLRIVGYALQCLFHVFCVSLEFKRRRRGEGVV 147
           D++WNL FV VA A+L +S  E P +PLR+ ++GYALQC+ H+ CV +E++RR R     
Sbjct: 104 DIVWNLAFVSVATAILVMSRKEHPIMPLRVWLLGYALQCVLHMVCVCVEYRRRNRRRTNR 163

Query: 148 --------------------FGDSVSGSSSTTVTGDEEERFHGENDSSVAKNLESANTFL 187
                                 +   GS   +   D          SSVAK+LESANT  
Sbjct: 164 TTTTTPPRSRSSSSSSSSSSLEEEALGSRRNSGVQDLSLGHLDTESSSVAKHLESANTMF 223

Query: 188 SFLWWIVGFYWITASGETLISCSPQLYWLCVTFLAFDVVFVMICVGVACLIGIAVCCCLP 247
           SF+WWI+GFYW++A G+ L   SP++YWL + FL FDV FV+ CV +AC+IGIAVCCCLP
Sbjct: 224 SFIWWIIGFYWVSAGGQELAQESPRIYWLSIVFLGFDVFFVVFCVALACVIGIAVCCCLP 283

Query: 248 CILGILYALTEREGATEEEIDRLPKFKFSRIDGLEK 283
           CI+ +LYA+ ++EGA++E+I++L KFKF ++    K
Sbjct: 284 CIIAVLYAVADQEGASKEDIEQLTKFKFRKLGDANK 319

Mediates E2-dependent protein ubiquitination in vitro.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8GUU2|RIE1_ARATH E3 ubiquitin protein ligase RIE1 OS=Arabidopsis thaliana GN=RIE1 PE=2 SV=1

 Score =  205 bits (522), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 105/243 (43%), Positives = 141/243 (58%), Gaps = 4/243 (1%)

Query: 41  AAARLLRRASGRRLMLREPSVRVRETAAEQLEERQSYWAYSRPIIVLDVLWNLVFVIVAF 100
           A A LL R +G R     PS+ VRETAA  LEER+  W YS+P++  D+LWN   V+ + 
Sbjct: 38  ALAVLLGRITGHR----APSMLVRETAARALEERRIDWGYSKPVVAADILWNAALVLASA 93

Query: 101 AVLGVSINEKPEVPLRLRIVGYALQCLFHVFCVSLEFKRRRRGEGVVFGDSVSGSSSTTV 160
            +L  ++ E+P  P+R+ I  Y LQCLFHV  V  E+ RR         +S         
Sbjct: 94  VMLVGTVEERPNEPIRVWICVYGLQCLFHVVLVWSEYWRRNSTRRARDLESYDHEDYNIE 153

Query: 161 TGDEEERFHGENDSSVAKNLESANTFLSFLWWIVGFYWITASGETLISCSPQLYWLCVTF 220
              E++        S  K  ES NT +SF+WWI+GFYW+   G+ L+  +P LYWL V F
Sbjct: 154 YDYEQDSDDNSTTYSFVKRCESINTVISFIWWIIGFYWVVEGGDKLLGEAPNLYWLSVIF 213

Query: 221 LAFDVVFVMICVGVACLIGIAVCCCLPCILGILYALTEREGATEEEIDRLPKFKFSRIDG 280
           LA DV F + CV +ACL+GIA+CCCLPCI+ +LYA+   EG +E E+  LP +KF     
Sbjct: 214 LAIDVFFAVFCVVLACLVGIALCCCLPCIIALLYAVAGTEGVSEAELGVLPLYKFKAFHS 273

Query: 281 LEK 283
            EK
Sbjct: 274 NEK 276

Probable E3 ubiquitin-protein ligase required for embryo development.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	294
449432181	385	PREDICTED: E3 ubiquitin-protein ligase A	0.962	0.735	0.598	5e-99
255541482	375	cleavage and polyadenylation specificity	0.982	0.770	0.627	3e-92
297817430	377	hypothetical protein ARALYDRAFT_486593 [	0.935	0.729	0.590	1e-89
18411876	379	RING/U-box domain-containing protein [Ar	0.935	0.725	0.586	4e-89
6850885	362	putative protein [Arabidopsis thaliana]	0.850	0.690	0.634	4e-88
301133592	363	C3HC4 type zinc finger protein [Brassica	0.891	0.721	0.588	1e-84
224063987	378	predicted protein [Populus trichocarpa]	0.938	0.730	0.609	1e-81
297824629	381	hypothetical protein ARALYDRAFT_322232 [	0.880	0.679	0.597	8e-80
225453718	382	PREDICTED: E3 ubiquitin-protein ligase A	0.962	0.740	0.600	2e-78
356568312	375	PREDICTED: E3 ubiquitin-protein ligase A	0.874	0.685	0.586	3e-78

>gi|449432181|ref|XP_004133878.1| PREDICTED: E3 ubiquitin-protein ligase At4g11680-like [Cucumis sativus] gi|449480146|ref|XP_004155812.1| PREDICTED: E3 ubiquitin-protein ligase At4g11680-like [Cucumis sativus]

 Score =  366 bits (940), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 176/294 (59%), Positives = 226/294 (76%), Gaps = 11/294 (3%)

Query: 6   PADAAETSPLLAHSLPDHLIRSRRLLRRPPPPLRGAAARLLRRASGRRLMLREPSVRVRE 65
           P  A + SPLL HS+ + L RSR  +RR P PLRGA  RLLRRASGR++MLREPSVRVRE
Sbjct: 11  PFRAVDNSPLLGHSVTNGLFRSRGFIRRSPQPLRGAV-RLLRRASGRQMMLREPSVRVRE 69

Query: 66  TAAEQLEERQSYWAYSRPIIVLDVLWNLVFVIVAFAVLGVSINEKPEVPLRLRIVGYALQ 125
           TAAEQLEERQS WAYS+PII+LD+LWNL FVI++F VLG+S +EKP VPLR  I+GYALQ
Sbjct: 70  TAAEQLEERQSDWAYSKPIILLDLLWNLAFVIISFTVLGLSTSEKPSVPLRFWIIGYALQ 129

Query: 126 CLFHVFCVSLEFKRRRRGEGVV----FGDSVSGSSSTTVTGDE------EERFHGENDSS 175
           C+ H+ CV++E+KRRR            D  SG  S +V+G +      E+  + +  S+
Sbjct: 130 CIIHMSCVAVEYKRRRSTREPTGLDRNSDWTSGEDSNSVSGSDGDDYATEQTVNEDESSN 189

Query: 176 VAKNLESANTFLSFLWWIVGFYWITASGETLISCSPQLYWLCVTFLAFDVVFVMICVGVA 235
           + K++ESANT  SF+WW++GFYW+TA G+ LI  SPQLYWL +TFLAFDVVFV+ICV +A
Sbjct: 190 LVKHIESANTMFSFIWWLLGFYWVTAGGQELIEGSPQLYWLSITFLAFDVVFVLICVAIA 249

Query: 236 CLIGIAVCCCLPCILGILYALTEREGATEEEIDRLPKFKFSRIDGLEKVNGVLH 289
           CL+G+A+CCCLPCI+ ILYA+T++EGAT+EEI+RLPK+ F+R   +EKVNG + 
Sbjct: 250 CLVGVAICCCLPCIIAILYAVTDQEGATKEEIERLPKYTFNRTGDVEKVNGDIQ 303

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541482|ref|XP_002511805.1| cleavage and polyadenylation specificity factor, putative [Ricinus communis] gi|223548985|gb|EEF50474.1| cleavage and polyadenylation specificity factor, putative [Ricinus communis]

 Score =  344 bits (883), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 184/293 (62%), Positives = 226/293 (77%), Gaps = 4/293 (1%)

Query: 4   NPPADAAETSPLLAHSLPDHLIRSRRLLRRPPPPLRGAAARLLRRASGRRLMLREPSVRV 63
           +P +D+ + SPLL HS+ DHL+RSRR+LRR PPP RGAAARLLRRAS RR+MLREPSVRV
Sbjct: 3   SPQSDSVDMSPLLTHSIADHLLRSRRILRRQPPPFRGAAARLLRRASSRRMMLREPSVRV 62

Query: 64  RETAAEQLEERQSYWAYSRPIIVLDVLWNLVFVIVAFAVLGVSINEKPEVPLRLRIVGYA 123
           RE AAEQLEERQ+ WAYS+PII LDVLWNL FV +   VLG+S+ E+P++PLR+ I+GY+
Sbjct: 63  RENAAEQLEERQTDWAYSKPIIFLDVLWNLAFVGIGVVVLGLSVKEEPQLPLRVWIIGYS 122

Query: 124 LQCLFHVFCVSLEFKRRRRGEGVVFGDSVSGSSSTTVTGDE----EERFHGENDSSVAKN 179
           LQCLFH+ CV  E+KRR  G       S S S S +  GD      E+   + D+ V K 
Sbjct: 123 LQCLFHIGCVIFEYKRRLFGTSARLEASDSTSVSESDGGDSVDDGVEQRGNDGDTCVVKQ 182

Query: 180 LESANTFLSFLWWIVGFYWITASGETLISCSPQLYWLCVTFLAFDVVFVMICVGVACLIG 239
           LESANT  SF+WWIVGFYW+TA G+ L + SPQLYWLC+TFLAFDV+FV+IC+ VACLIG
Sbjct: 183 LESANTMFSFIWWIVGFYWVTAGGQNLTNDSPQLYWLCITFLAFDVIFVIICIAVACLIG 242

Query: 240 IAVCCCLPCILGILYALTEREGATEEEIDRLPKFKFSRIDGLEKVNGVLHLPF 292
           +A+CCCLPCI+GILYA+T+REGAT+EEI++LP +KF RI   EKVN      F
Sbjct: 243 LAICCCLPCIIGILYAMTDREGATQEEIEQLPMYKFRRIGDFEKVNADFQATF 295

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297817430|ref|XP_002876598.1| hypothetical protein ARALYDRAFT_486593 [Arabidopsis lyrata subsp. lyrata] gi|297322436|gb|EFH52857.1| hypothetical protein ARALYDRAFT_486593 [Arabidopsis lyrata subsp. lyrata]

 Score =  335 bits (860), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 170/288 (59%), Positives = 204/288 (70%), Gaps = 13/288 (4%)

Query: 4   NPPADAAETSPLLAHSLPDHLIRSRRLLRRPPPPLRGAAARLLRRASGRRLMLREPSVRV 63
           +P  D  + SPLL  +  +    S+        PLRGAA+RLLRRAS RR+MLREPSVRV
Sbjct: 12  SPATDTMDVSPLLGRNRRNRPRSSQ--------PLRGAASRLLRRASNRRMMLREPSVRV 63

Query: 64  RETAAEQLEERQSYWAYSRPIIVLDVLWNLVFVIVAFAVLGVSINEKPEVPLRLRIVGYA 123
           RE AAEQLEERQS WAYS+PIIVLD+LWN VFVIV+ A+LG S  E P+VPLRL I+GY 
Sbjct: 64  REVAAEQLEERQSQWAYSKPIIVLDILWNFVFVIVSIAILGFSSEEDPDVPLRLWIIGYN 123

Query: 124 LQCLFHVFCVSLEFKRRRRGEGVVFGDSVSGSSSTTVTGDEEERF-----HGENDSSVAK 178
            QCL HV CV  E+KRRR       G+  S   S + + DE + +       ++ +S  K
Sbjct: 124 FQCLLHVGCVIAEYKRRREANSPPSGEDSSNHESLSGSDDESDGYSINDTDDDHGTSFTK 183

Query: 179 NLESANTFLSFLWWIVGFYWITASGETLISCSPQLYWLCVTFLAFDVVFVMICVGVACLI 238
           +LESANT  SF+WWI+GFYW+TA  E L   SPQLYWLCV FLAFDV+FV+ICV VA LI
Sbjct: 184 HLESANTMFSFVWWIIGFYWVTADTEALAQSSPQLYWLCVAFLAFDVMFVVICVAVASLI 243

Query: 239 GIAVCCCLPCILGILYALTEREGATEEEIDRLPKFKFSRIDGLEKVNG 286
           GIAVCCCLPCI+ ILYAL ++EGA +EEI+RL KFKF  +   EKVNG
Sbjct: 244 GIAVCCCLPCIIAILYALADQEGAPDEEIERLLKFKFLVVKNSEKVNG 291

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18411876|ref|NP_567110.1| RING/U-box domain-containing protein [Arabidopsis thaliana] gi|16648921|gb|AAL24312.1| putative protein [Arabidopsis thaliana] gi|17978715|gb|AAL47351.1| putative protein [Arabidopsis thaliana] gi|332646647|gb|AEE80168.1| RING/U-box domain-containing protein [Arabidopsis thaliana]

 Score =  333 bits (855), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 170/290 (58%), Positives = 206/290 (71%), Gaps = 15/290 (5%)

Query: 4   NPPADAAETSPLLAHSLPDHLIRSRRLLRRPPPPLRGAAARLLRRASGRRLMLREPSVRV 63
           +P  D  + SPLL  +  +    S+        P+RGAA+RLLRRAS RR+MLREPSVRV
Sbjct: 12  SPTTDTMDASPLLGRNRRNRPRSSQ--------PIRGAASRLLRRASNRRMMLREPSVRV 63

Query: 64  RETAAEQLEERQSYWAYSRPIIVLDVLWNLVFVIVAFAVLGVSINEKPEVPLRLRIVGYA 123
           RE AAEQLEERQS WAYS+PIIVLD+LWN +FVIV+ A+LG S +E P+VPLRL I+GY 
Sbjct: 64  REVAAEQLEERQSQWAYSKPIIVLDILWNFLFVIVSIAILGFSSDEDPDVPLRLWIIGYN 123

Query: 124 LQCLFHVFCVSLEFKRRR-------RGEGVVFGDSVSGSSSTTVTGDEEERFHGENDSSV 176
           +QCLFHV CV  E+KRRR        GE     +S+SGS   +           ++ +S 
Sbjct: 124 VQCLFHVGCVIAEYKRRRVANSPPPSGEDSSNHESLSGSEDESDGYSINNTDDDDHGTSF 183

Query: 177 AKNLESANTFLSFLWWIVGFYWITASGETLISCSPQLYWLCVTFLAFDVVFVMICVGVAC 236
            K+LESANT  SF+WWI+GFYW+TA  E L   SPQLYWLCV FLAFDV+FV+ICV VA 
Sbjct: 184 TKHLESANTMFSFVWWIIGFYWVTADTEALAQSSPQLYWLCVAFLAFDVMFVVICVAVAS 243

Query: 237 LIGIAVCCCLPCILGILYALTEREGATEEEIDRLPKFKFSRIDGLEKVNG 286
           LIGIAVCCCLPCI+ ILYAL ++EGA +EEI+RL KFKF  +   EKVNG
Sbjct: 244 LIGIAVCCCLPCIIAILYALADQEGAPDEEIERLLKFKFLTVKNSEKVNG 293

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6850885|emb|CAB71048.1| putative protein [Arabidopsis thaliana]

 Score =  330 bits (847), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 163/257 (63%), Positives = 194/257 (75%), Gaps = 7/257 (2%)

Query: 37  PLRGAAARLLRRASGRRLMLREPSVRVRETAAEQLEERQSYWAYSRPIIVLDVLWNLVFV 96
           P+RGAA+RLLRRAS RR+MLREPSVRVRE AAEQLEERQS WAYS+PIIVLD+LWN +FV
Sbjct: 20  PIRGAASRLLRRASNRRMMLREPSVRVREVAAEQLEERQSQWAYSKPIIVLDILWNFLFV 79

Query: 97  IVAFAVLGVSINEKPEVPLRLRIVGYALQCLFHVFCVSLEFKRRR-------RGEGVVFG 149
           IV+ A+LG S +E P+VPLRL I+GY +QCLFHV CV  E+KRRR        GE     
Sbjct: 80  IVSIAILGFSSDEDPDVPLRLWIIGYNVQCLFHVGCVIAEYKRRRVANSPPPSGEDSSNH 139

Query: 150 DSVSGSSSTTVTGDEEERFHGENDSSVAKNLESANTFLSFLWWIVGFYWITASGETLISC 209
           +S+SGS   +           ++ +S  K+LESANT  SF+WWI+GFYW+TA  E L   
Sbjct: 140 ESLSGSEDESDGYSINNTDDDDHGTSFTKHLESANTMFSFVWWIIGFYWVTADTEALAQS 199

Query: 210 SPQLYWLCVTFLAFDVVFVMICVGVACLIGIAVCCCLPCILGILYALTEREGATEEEIDR 269
           SPQLYWLCV FLAFDV+FV+ICV VA LIGIAVCCCLPCI+ ILYAL ++EGA +EEI+R
Sbjct: 200 SPQLYWLCVAFLAFDVMFVVICVAVASLIGIAVCCCLPCIIAILYALADQEGAPDEEIER 259

Query: 270 LPKFKFSRIDGLEKVNG 286
           L KFKF  +   EKVNG
Sbjct: 260 LLKFKFLTVKNSEKVNG 276

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|301133592|gb|ADK63418.1| C3HC4 type zinc finger protein [Brassica rapa]

 Score =  319 bits (817), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 166/282 (58%), Positives = 196/282 (69%), Gaps = 20/282 (7%)

Query: 6   PADAAETSPLLAHSLPDHLIRSRRLLRRPPPPLRGAAARLLRRASGRRLMLREPSVRVRE 65
           PA    +SPLL  +            RRP  PLRGAA+RLLRRAS R +MLRE SVRVRE
Sbjct: 15  PATDDASSPLLNRN------------RRPSQPLRGAASRLLRRASSRGMMLRESSVRVRE 62

Query: 66  TAAEQLEERQSYWAYSRPIIVLDVLWNLVFVIVAFAVLGVSINEKPEVPLRLRIVGYALQ 125
           TAAEQ+EERQS WAYS+P+IVLDVLWNL FV V   V   S  E P  PLR  IVGY LQ
Sbjct: 63  TAAEQIEERQSEWAYSKPVIVLDVLWNLAFVFVTVGVSWFSSEEDPRAPLRFWIVGYNLQ 122

Query: 126 CLFHVFCVSLEFKRRRRGEGVVFG-DSVSGSSSTTVTGDEEERFHGENDSSVAKNLESAN 184
           CL H+ CV  E++RR     +  G  SV GSS     G E      E+ +SVAK++ES N
Sbjct: 123 CLIHIACVIAEYRRRESNRDLDSGLSSVQGSSDGY--GAE-----IESGNSVAKHIESTN 175

Query: 185 TFLSFLWWIVGFYWITASGETLISCSPQLYWLCVTFLAFDVVFVMICVGVACLIGIAVCC 244
              SF+WW++GFYW+TA  E L   SPQLYWLCV FLAFDV+FV++CV VACLIGIAVCC
Sbjct: 176 AIFSFVWWVIGFYWVTADAEELAQSSPQLYWLCVAFLAFDVIFVVLCVAVACLIGIAVCC 235

Query: 245 CLPCILGILYALTEREGATEEEIDRLPKFKFSRIDGLEKVNG 286
           CLPCI+ +LYAL +REGA++EEI++LPKFKF  +   EKVNG
Sbjct: 236 CLPCIIAVLYALADREGASDEEIEKLPKFKFLTVRNSEKVNG 277

Source: Brassica rapa

Species: Brassica rapa

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224063987|ref|XP_002301335.1| predicted protein [Populus trichocarpa] gi|222843061|gb|EEE80608.1| predicted protein [Populus trichocarpa]

 Score =  309 bits (791), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 175/287 (60%), Positives = 217/287 (75%), Gaps = 11/287 (3%)

Query: 4   NPPADAAETSPLLAHSLPDHLIRSRRLLRRPPPPLRGAAARLLRRASGRRLMLREPSVRV 63
           +P +DA ++SPLLAHS+ +HL+RSRRLLRRPP  LRGAAAR+LRRAS RR+MLREPSVRV
Sbjct: 11  SPQSDAIDSSPLLAHSIANHLLRSRRLLRRPPQ-LRGAAARILRRASSRRMMLREPSVRV 69

Query: 64  RETAAEQLEERQSYWAYSRPIIVLDVLWNLVFVIVAFAVLGVSINEKPEVPLRLRIVGYA 123
           RE AAEQLEERQS W YS+P++V+DVLW+L  VI+A  VLG+S+ EKP VP R  IV Y 
Sbjct: 70  RENAAEQLEERQSDWGYSKPVVVIDVLWSLAIVIIAVGVLGLSLEEKPRVPFRAWIVAYI 129

Query: 124 LQCLFHVFCVSLEFKRRR----RGEGVVFGDSVSGSSSTTVTGDEEERFHGENDSSVAKN 179
           L C  HV CV +E+++RR    R  G++  D  SG S    T   E    G+N +SVAK 
Sbjct: 130 LLCSCHVVCVVVEYRKRRNLGLRESGILSSD--SGDSLDFSTQQSEN--DGQN-TSVAKR 184

Query: 180 LESANTFLSFLWWIVGFYWITASG-ETLISCSPQLYWLCVTFLAFDVVFVMICVGVACLI 238
           +ESA T  S +WWI+GFYW+T +G + +   SPQLYWLC+ FLA D +FV+IC+ VACLI
Sbjct: 185 VESAMTTFSIIWWIIGFYWVTTAGRQNVAKDSPQLYWLCIAFLAADTLFVIICIAVACLI 244

Query: 239 GIAVCCCLPCILGILYALTEREGATEEEIDRLPKFKFSRIDGLEKVN 285
           GIAVCC LPCI+GILYA+ ++EGAT+EEIDRL K+KF RI   EKVN
Sbjct: 245 GIAVCCFLPCIIGILYAMADQEGATKEEIDRLLKYKFHRIGNCEKVN 291

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297824629|ref|XP_002880197.1| hypothetical protein ARALYDRAFT_322232 [Arabidopsis lyrata subsp. lyrata] gi|297326036|gb|EFH56456.1| hypothetical protein ARALYDRAFT_322232 [Arabidopsis lyrata subsp. lyrata]

 Score =  303 bits (775), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 165/276 (59%), Positives = 196/276 (71%), Gaps = 17/276 (6%)

Query: 24  LIRSRRLLRRPPPPLRGAAARLLRRASGRRLMLREPSVRVRETAAEQLEERQSYWAYSRP 83
           L R+RR L R   PLRGAA+RLLRRAS RR+MLRE SVRVRE AAEQ+EERQS WAYS+P
Sbjct: 24  LNRNRRALSRSSQPLRGAASRLLRRASSRRMMLRESSVRVRENAAEQIEERQSEWAYSKP 83

Query: 84  IIVLDVLWNLVFVIVAFAVLGVSINEKPEVPLRLRIVGYALQCLFHVFCVSLEFKRRRRG 143
           +IVLDVLWNL FV V  A+LG S +E P VPLR  I+GY LQCLFHV CV  E++RR R 
Sbjct: 84  VIVLDVLWNLAFVFVTIAILGFSSDENPHVPLRFWIIGYNLQCLFHVGCVIAEYRRRHRR 143

Query: 144 EGVVFGDS-------------VSGSSSTTVTGDEEERFHGENDSSVAKNLESANTFLSFL 190
           +   F +                 S    +  D +     E  +S+AK+LESAN   SF+
Sbjct: 144 QSDDFPNEDSVLGSSSSHGSSEDESDDYAIVDDSQ----IEPGTSLAKHLESANAIFSFV 199

Query: 191 WWIVGFYWITASGETLISCSPQLYWLCVTFLAFDVVFVMICVGVACLIGIAVCCCLPCIL 250
           WWI+GFYW+TA  E L   SPQLYWLCV FLAFDV+FV++CV VACLIGIAVCCCLPCI+
Sbjct: 200 WWIIGFYWVTADSEELSQSSPQLYWLCVAFLAFDVIFVVLCVAVACLIGIAVCCCLPCII 259

Query: 251 GILYALTEREGATEEEIDRLPKFKFSRIDGLEKVNG 286
            +LYAL +R GA++EEI+RLPKFKF  +   EKVNG
Sbjct: 260 AVLYALADRGGASDEEIERLPKFKFLTVRNSEKVNG 295

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453718|ref|XP_002271651.1| PREDICTED: E3 ubiquitin-protein ligase At4g11680-like isoform 1 [Vitis vinifera]

 Score =  298 bits (763), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 179/298 (60%), Positives = 223/298 (74%), Gaps = 15/298 (5%)

Query: 7   ADAAETSPLLAHSLPDHLIRSRRLLRRPPPPLRGAAARLLRRASGRRLMLREPSVRVRET 66
           ADA +T+PLL  S+ D ++RSRRL+RRPP  LRGAA R LRRAS RR+M REPS+RVRET
Sbjct: 8   ADATDTTPLLHASVSDQILRSRRLIRRPPS-LRGAA-RFLRRASSRRIM-REPSMRVRET 64

Query: 67  AAEQLEERQSYWAYSRPIIVLDVLWNLVFVIVAFAVLGVSINEKPEVPLRLRIVGYALQC 126
           AAEQLEERQS WAYS+PI++LD++WNL FV+VA  VL +S +E P  PLRL I+GY LQC
Sbjct: 65  AAEQLEERQSDWAYSKPIVILDIVWNLAFVVVAMTVLVMSRDETPSTPLRLWIIGYGLQC 124

Query: 127 LFHVFCVSLEFKRRRR----GEGVVFGDSVSGSSSTTVTGDE--------EERFHGENDS 174
           + H+ CV +E+KRRRR    G     G   SG  S++   DE        E R   E+++
Sbjct: 125 VLHMVCVCVEYKRRRRLVSSGALERSGGWGSGHLSSSSGSDEGDPIDYRVEVRNRDEDET 184

Query: 175 SVAKNLESANTFLSFLWWIVGFYWITASGETLISCSPQLYWLCVTFLAFDVVFVMICVGV 234
           SVAK+LESANT  SF+WWI+GFYW++A G+ L   SPQLYWLC+ FLAFDV FV+ICV V
Sbjct: 185 SVAKHLESANTMFSFIWWIIGFYWVSAGGQDLTRDSPQLYWLCIVFLAFDVFFVVICVAV 244

Query: 235 ACLIGIAVCCCLPCILGILYALTEREGATEEEIDRLPKFKFSRIDGLEKVNGVLHLPF 292
           AC+IGIAVCCCLPCI+ ILY + ++EGAT+EEI+RLPK+KF RI   EK+NG +   F
Sbjct: 245 ACVIGIAVCCCLPCIIAILYTVADQEGATKEEIERLPKYKFRRIGESEKLNGEIQESF 302

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356568312|ref|XP_003552356.1| PREDICTED: E3 ubiquitin-protein ligase At4g11680-like [Glycine max]

 Score =  298 bits (762), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 156/266 (58%), Positives = 190/266 (71%), Gaps = 9/266 (3%)

Query: 26  RSRRLLRRPPPPLRGAAARLLRRASGRRLMLREPSVRVRETAAEQLEERQSYWAYSRPII 85
           RSR LLRR PPPL   AA   RRASGRR+MLREPSVR+RE AA ++E RQS WAYSRP++
Sbjct: 25  RSRHLLRRAPPPLH-TAATFFRRASGRRMMLREPSVRMREAAAAEVEGRQSEWAYSRPVV 83

Query: 86  VLDVLWNLVFVIVAFAVLGVSINEKPEVPLRLRIVGYALQCLFHVFCVSLEFKRRRRG-- 143
            LDV WN VF+ +  +VL +S +E P VPLR  IVGY LQ   H  CV  EF RRRR   
Sbjct: 84  ALDVAWNAVFLAIGASVLALSTDEDPCVPLRAWIVGYLLQGALHSLCVVAEFTRRRRRRV 143

Query: 144 EGVVFGDSVSGSSSTTVTGDEEERFHG-----END-SSVAKNLESANTFLSFLWWIVGFY 197
            G   G +V G    + + + +E F+      E D +S+ K++E+ NT LSF+WWIVGFY
Sbjct: 144 SGTHPGSNVVGHVQWSFSSESDEEFYPPEQFLEGDGNSITKHIETVNTMLSFIWWIVGFY 203

Query: 198 WITASGETLISCSPQLYWLCVTFLAFDVVFVMICVGVACLIGIAVCCCLPCILGILYALT 257
           W+TA G++L   SPQLYWLC+TFLAFDVV V+ICV VACLIGIAVCCCLPCIL ILY + 
Sbjct: 204 WVTAGGQSLTRDSPQLYWLCITFLAFDVVIVLICVSVACLIGIAVCCCLPCILAILYVVA 263

Query: 258 EREGATEEEIDRLPKFKFSRIDGLEK 283
           + EGAT+EEID+LPK+KF  I   +K
Sbjct: 264 DPEGATKEEIDQLPKYKFRIIKEFKK 289

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	294
TAIR|locus:2098916	379	AT3G61180 [Arabidopsis thalian	0.778	0.604	0.597	2.3e-71
TAIR|locus:2139717	390	AT4G11680 [Arabidopsis thalian	0.778	0.587	0.530	1.7e-68
TAIR|locus:2195077	408	AT1G12760 [Arabidopsis thalian	0.374	0.269	0.590	6.8e-65
TAIR|locus:2015248	381	AT1G63170 [Arabidopsis thalian	0.751	0.580	0.518	6e-64
TAIR|locus:2200301	343	AT1G68070 [Arabidopsis thalian	0.741	0.635	0.468	8.9e-54
TAIR|locus:1005452975	359	RIE1 "RING-finger protein for	0.765	0.626	0.426	3.2e-49
TAIR|locus:2125652	453	AT4G32600 [Arabidopsis thalian	0.268	0.174	0.417	2.7e-14
TAIR|locus:2034210	407	AT1G80400 [Arabidopsis thalian	0.268	0.194	0.373	6.2e-13
TAIR|locus:2161740	343	AT5G55970 [Arabidopsis thalian	0.629	0.539	0.277	4.1e-09
TAIR|locus:2133877	335	AT4G26580 [Arabidopsis thalian	0.625	0.549	0.236	5.2e-09

TAIR|locus:2098916 AT3G61180 [Arabidopsis thaliana (taxid:3702)]

 Score = 722 (259.2 bits), Expect = 2.3e-71, P = 2.3e-71
 Identities = 141/236 (59%), Positives = 166/236 (70%)

Query:    58 EPSVRVRETAAEQLEERQSYWAYSRPIIVLDVLWNLVFVIVAFAVLGVSINEKPEVPLRL 117
             EPSVRVRE AAEQLEERQS WAYS+PIIVLD+LWN +FVIV+ A+LG S +E P+VPLRL
Sbjct:    58 EPSVRVREVAAEQLEERQSQWAYSKPIIVLDILWNFLFVIVSIAILGFSSDEDPDVPLRL 117

Query:   118 RIVGYALQCLFHVFCVSLEFKRRRRXXX---XXXXXXXXXXXXXXXXXXXXXRFHGEND- 173
              I+GY +QCLFHV CV  E+KRRR                              +  +D 
Sbjct:   118 WIIGYNVQCLFHVGCVIAEYKRRRVANSPPPSGEDSSNHESLSGSEDESDGYSINNTDDD 177

Query:   174 ---SSVAKNLESANTFLSFLWWIVGFYWITASGETLISCSPQLYWLCVTFLAFDVVFVMI 230
                +S  K+LESANT  SF+WWI+GFYW+TA  E L   SPQLYWLCV FLAFDV+FV+I
Sbjct:   178 DHGTSFTKHLESANTMFSFVWWIIGFYWVTADTEALAQSSPQLYWLCVAFLAFDVMFVVI 237

Query:   231 CVGVACLIGIAVCCCLPCILGILYALTEREGATEEEIDRLPKFKFSRIDGLEKVNG 286
             CV VA LIGIAVCCCLPCI+ ILYAL ++EGA +EEI+RL KFKF  +   EKVNG
Sbjct:   238 CVAVASLIGIAVCCCLPCIIAILYALADQEGAPDEEIERLLKFKFLTVKNSEKVNG 293

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2139717 AT4G11680 [Arabidopsis thaliana (taxid:3702)]

 Score = 695 (249.7 bits), Expect = 1.7e-68, P = 1.7e-68
 Identities = 122/230 (53%), Positives = 167/230 (72%)

Query:    58 EPSVRVRETAAEQLEERQSYWAYSRPIIVLDVLWNLVFVIVAFAVLGVSINEKPEVPLRL 117
             EPS+ VRETAAEQLEERQS WAYS+P++ LD+LWNL FV +  AVL +S +EKP +PLR+
Sbjct:    83 EPSMLVRETAAEQLEERQSDWAYSKPVVFLDILWNLAFVAIGVAVLILSRDEKPNMPLRV 142

Query:   118 RIVGYALQCLFHVFCVSLEFKRRRRXXXXXXXXXXXXXXXXXXXXXXXXRFHGENDSS-V 176
              +VGY +QC  H+ CV +E++RRRR                        +     ++S  
Sbjct:   143 WVVGYGIQCWLHMACVCVEYRRRRRRRHPEDGGGSGLTNSSSQQYVSLAQLEDRGETSNP 202

Query:   177 AKNLESANTFLSFLWWIVGFYWITASGETLISCSPQLYWLCVTFLAFDVVFVMICVGVAC 236
             AK+LESANT  SF+WWI+GFYW++A G+TL S SPQLYWLC+ FL FDV FV+ CV +AC
Sbjct:   203 AKHLESANTMFSFIWWIIGFYWVSAGGQTLSSDSPQLYWLCIIFLGFDVFFVVFCVALAC 262

Query:   237 LIGIAVCCCLPCILGILYALTEREGATEEEIDRLPKFKFSRIDGLEKVNG 286
             +IG+AVCCCLPCI+ ILYA+ ++EGA++ +ID++PKF+F++   +EK++G
Sbjct:   263 VIGLAVCCCLPCIIAILYAVADQEGASKNDIDQMPKFRFTKTGNVEKLSG 312

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2195077 AT1G12760 [Arabidopsis thaliana (taxid:3702)]

 Score = 395 (144.1 bits), Expect = 6.8e-65, Sum P(2) = 6.8e-65
 Identities = 65/110 (59%), Positives = 89/110 (80%)

Query:   174 SSVAKNLESANTFLSFLWWIVGFYWITASGETLISCSPQLYWLCVTFLAFDVVFVMICVG 233
             SSVAK+LESANT  SF+WWI+GFYW++A G+ L   SP++YWL + FL FDV FV+ CV 
Sbjct:   210 SSVAKHLESANTMFSFIWWIIGFYWVSAGGQELAQESPRIYWLSIVFLGFDVFFVVFCVA 269

Query:   234 VACLIGIAVCCCLPCILGILYALTEREGATEEEIDRLPKFKFSRIDGLEK 283
             +AC+IGIAVCCCLPCI+ +LYA+ ++EGA++E+I++L KFKF ++    K
Sbjct:   270 LACVIGIAVCCCLPCIIAVLYAVADQEGASKEDIEQLTKFKFRKLGDANK 319

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

TAIR|locus:2015248 AT1G63170 [Arabidopsis thaliana (taxid:3702)]

 Score = 652 (234.6 bits), Expect = 6.0e-64, P = 6.0e-64
 Identities = 123/237 (51%), Positives = 165/237 (69%)

Query:    58 EPSVRVRETAAEQLEERQSYWAYSRPIIVLDVLWNLVFVIVAFAVLGVSINEKPEVPLRL 117
             EPS+ VRE AAEQLEERQS WAYS+P++VLD +WNL FV+VA AVL +S +E P +PLR+
Sbjct:    48 EPSMLVREAAAEQLEERQSDWAYSKPVVVLDFVWNLAFVVVATAVLVLSSDENPNMPLRV 107

Query:   118 RIVGYALQCLFHVFCVSLEFKRR--RRXXXXXXXXXXXXXXXXXX---------XXXXXX 166
              I+GY LQC+ H+ CV +E++RR  RR                                 
Sbjct:   108 WIIGYGLQCMMHMVCVCVEYRRRNSRRRRDLSPRSSSSSSSSSSSMDEEEGLGLSRNSDE 167

Query:   167 RFH--G--ENDS-SVAKNLESANTFLSFLWWIVGFYWITASGETLISCSPQLYWLCVTFL 221
             R+   G  EN++ S AK+LESANT +SF+WW++GFYW+++ G+ L   SPQLYWLC+ FL
Sbjct:   168 RYLELGQLENENNSFAKHLESANTMISFIWWVIGFYWVSSGGQELAQGSPQLYWLCIVFL 227

Query:   222 AFDVVFVMICVGVACLIGIAVCCCLPCILGILYALTEREGATEEEIDRLPKFKFSRI 278
              FDV FV+ CV +AC+IGIAVCCCLPCI+ +LYA+ E+EGA++E+ID+L KFKF ++
Sbjct:   228 GFDVFFVVFCVALACVIGIAVCCCLPCIIAVLYAVAEQEGASKEDIDQLTKFKFRKV 284

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2200301 AT1G68070 [Arabidopsis thaliana (taxid:3702)]

 Score = 556 (200.8 bits), Expect = 8.9e-54, P = 8.9e-54
 Identities = 105/224 (46%), Positives = 142/224 (63%)

Query:    60 SVRVRETAAEQLEERQSYWAYSRPIIVLDVLWNLVFVIVAFAVLGVSINEKPEVPLRLRI 119
             S+ VRETAA++LEER++ W YS+P++ LD+LWN  FV+VA  +L V   EKP VP+R+ I
Sbjct:    44 SMVVRETAAQELEERRADWGYSKPVVALDMLWNTAFVLVAIVMLLVFKEEKPNVPIRIWI 103

Query:   120 VGYALQCLFHVFCVSLEFKRRRRXXXXXXXXXXXXXXXXXXXXXXXXRFHGENDSSVAKN 179
              GYA+QCL HV  V LEF++R                          RF         K 
Sbjct:   104 CGYAIQCLVHVVLVWLEFRKRNARSRPGDLEAAQATNQDSEDEDNDERFLS------TKT 157

Query:   180 LESANTFLSFLWWIVGFYWITASGETLISCSPQLYWLCVTFLAFDVVFVMICVGVACLIG 239
              ES NT +SF+WWIVGFYW+ + G+ L+  +  LYWL   FLAFDV F + CV +ACLIG
Sbjct:   158 CESMNTIISFVWWIVGFYWLVSGGDILLQNATHLYWLTFVFLAFDVFFAIFCVVLACLIG 217

Query:   240 IAVCCCLPCILGILYALTEREGATEEEIDRLPKFKFSRIDGLEK 283
             IA+CCCLPCI+ +LYA+  +EGA+E ++  LPK++F  ++  EK
Sbjct:   218 IALCCCLPCIIALLYAVAGQEGASEADLSILPKYRFHTMNNDEK 261

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0006661 "phosphatidylinositol biosynthetic process" evidence=RCA

TAIR|locus:1005452975 RIE1 "RING-finger protein for embryogenesis" [Arabidopsis thaliana (taxid:3702)]

 Score = 513 (185.6 bits), Expect = 3.2e-49, P = 3.2e-49
 Identities = 96/225 (42%), Positives = 128/225 (56%)

Query:    59 PSVRVRETAAEQLEERQSYWAYSRPIIVLDVLWNLVFVIVAFAVLGVSINEKPEVPLRLR 118
             PS+ VRETAA  LEER+  W YS+P++  D+LWN   V+ +  +L  ++ E+P  P+R+ 
Sbjct:    52 PSMLVRETAARALEERRIDWGYSKPVVAADILWNAALVLASAVMLVGTVEERPNEPIRVW 111

Query:   119 IVGYALQCLFHVFCVSLEFKRRRRXXXXXXXXXXXXXXXXXXXXXXXXRFHGENDSSVAK 178
             I  Y LQCLFHV  V  E+ RR                                  S  K
Sbjct:   112 ICVYGLQCLFHVVLVWSEYWRRNSTRRARDLESYDHEDYNIEYDYEQDSDDNSTTYSFVK 171

Query:   179 NLESANTFLSFLWWIVGFYWITASGETLISCSPQLYWLCVTFLAFDVVFVMICVGVACLI 238
               ES NT +SF+WWI+GFYW+   G+ L+  +P LYWL V FLA DV F + CV +ACL+
Sbjct:   172 RCESINTVISFIWWIIGFYWVVEGGDKLLGEAPNLYWLSVIFLAIDVFFAVFCVVLACLV 231

Query:   239 GIAVCCCLPCILGILYALTEREGATEEEIDRLPKFKFSRIDGLEK 283
             GIA+CCCLPCI+ +LYA+   EG +E E+  LP +KF      EK
Sbjct:   232 GIALCCCLPCIIALLYAVAGTEGVSEAELGVLPLYKFKAFHSNEK 276

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0009790 "embryo development" evidence=IMP

TAIR|locus:2125652 AT4G32600 [Arabidopsis thaliana (taxid:3702)]

 Score = 165 (63.1 bits), Expect = 2.7e-14, Sum P(2) = 2.7e-14
 Identities = 38/91 (41%), Positives = 52/91 (57%)

Query:   190 LWWIVGFYWITASGETLISCSPQLYWLCVTFLAFDVVFVMICVGVAC--LIGIAVCCCLP 247
             +W++VG  WI   G +  + +P LY LC+ FL F       C+G A   ++   +CCCLP
Sbjct:   241 VWFVVGNVWIFG-GHSSAAEAPNLYRLCLVFLTFS------CIGYAMPFILCTTICCCLP 293

Query:   248 CILGIL-YA--LTEREGATEEEIDRLPKFKF 275
             CI+ IL Y   LT+  GAT E I+ LP  KF
Sbjct:   294 CIISILGYREDLTQPRGATPESINALPTHKF 324

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2034210 AT1G80400 [Arabidopsis thaliana (taxid:3702)]

 Score = 159 (61.0 bits), Expect = 6.2e-13, Sum P(2) = 6.2e-13
 Identities = 34/91 (37%), Positives = 52/91 (57%)

Query:   190 LWWIVGFYWITASGETLISCSPQLYWLCVTFLAFDVVFVMICVGVAC--LIGIAVCCCLP 247
             +W++VG  WI   G +  S SP+LY LC+ FL F       C+G A   ++   +CCCLP
Sbjct:   236 VWFVVGNVWIFG-GHSSPSDSPKLYRLCIAFLTFS------CIGYAMPFILCATICCCLP 288

Query:   248 CILGIL---YALTEREGATEEEIDRLPKFKF 275
             C++ +L      ++  GAT E I+ LP ++F
Sbjct:   289 CLISVLGFRENFSQTRGATAEAINALPVYRF 319

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2161740 AT5G55970 [Arabidopsis thaliana (taxid:3702)]

 Score = 154 (59.3 bits), Expect = 4.1e-09, P = 4.1e-09
 Identities = 58/209 (27%), Positives = 93/209 (44%)

Query:    76 SYWAYSRPIIVLDVLWNLVFVIVAFAVLGVSINEKPEVPLRLRIVGYALQCLFHVFCVSL 135
             S W  S  I +L  L      ++ F  L +S  E+P  P+RL I GY + CL ++    L
Sbjct:    89 STWMMSELIALLVQL-----TVITFT-LAISKEERPIWPVRLWITGYDVGCLLNLM---L 139

Query:   136 EFKRRRRXXXXXXXXXXXXXXXXXXXXXXXXRFHGENDSSVAKNLESANTFLSF-LWWIV 194
              + R R+                        R   E  SS   N    +  L F +W+++
Sbjct:   140 LYGRYRQLDINQGNGFVLGDVEQQQ------RGREETRSSHLMNKCRTSLELFFAIWFVI 193

Query:   195 GFYWITASGETLISCSPQLYWLCVTFLAFDVVFVMICVGVACLIGIAVCCCLPCILGIL- 253
             G  W+  S       +P+L+ LCV+ LA++     IC     L+ + +CC +P I  +L 
Sbjct:   194 GNVWVFDSRFGSFHHAPKLHVLCVSLLAWNA----ICYSFPFLLFLFLCCLVPLISSLLG 249

Query:   254 YAL---TEREGATEEEIDRLPKFKFSRID 279
             Y +   +    A++++I  LP +KF RID
Sbjct:   250 YNMNMGSSDRAASDDQISSLPSWKFKRID 278

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2133877 AT4G26580 [Arabidopsis thaliana (taxid:3702)]

 Score = 153 (58.9 bits), Expect = 5.2e-09, P = 5.2e-09
 Identities = 47/199 (23%), Positives = 91/199 (45%)

Query:    85 IVLDVLWNLVFVIVAFAVLGVSINEKPEVPLRLRIVGYALQCLFHVFCVSLEFKRRRRXX 144
             +V +++  L+ + V  + L +S NE+P  P+RL I GY + CL ++  +   + R++   
Sbjct:    88 MVSELIALLLQITVITSTLALSKNERPVWPMRLWITGYNVGCLLNLMLLYGRY-RQQDTS 146

Query:   145 XXXXXXXXXXXXXXXXXXXXXXRFHGENDSSVAKNLESANTFLSFLWWIVGFYWITASGE 204
                                     H  N     K   S   F + +W+++G  W+  S  
Sbjct:   147 HENAFSFGDIEQQQRSREETTRCSHLMN-----KCRTSLELFFA-IWFVIGNVWVFDSRF 200

Query:   205 TLISCSPQLYWLCVTFLAFDVVFVMICVGVACLIGIAVCCCLPCILGIL-YAL---TERE 260
                  +P L+ LC++ LA++     +C     L+ + +CC +P +   L Y +   +  +
Sbjct:   201 GSFHYAPILHVLCISLLAWNA----LCYSFPFLLFLLLCCVVPLVSSFLGYNMNVGSSEK 256

Query:   261 GATEEEIDRLPKFKFSRID 279
             GA++++I  LP +K+  ID
Sbjct:   257 GASDDQISSLPSWKYKLID 275

GO:0008270 "zinc ion binding" evidence=IEA;ISS

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh2_kg.5__2585__AT3G61180.1 annotation not avaliable (377 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	294
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 4e-04
 Identities = 43/331 (12%), Positives = 85/331 (25%), Gaps = 127/331 (38%)

Query: 6   PADAAETSPLL----AHSLPDHLIRSRRLLRRPPPPLRGAAARLLRRASGRRLMLREPSV 61
           P +   T+P      A S+ D L                      +  +  +L       
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNW----------------KHVNCDKLT------ 356

Query: 62  RVRETAAEQL---EERQSYWAYSR-------PIIVLDVLWN-----LVFVIVAFAVLGVS 106
            + E++   L   E R+ +   S        P I+L ++W       V V+V        
Sbjct: 357 TIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL 416

Query: 107 INEKPEVPLRLRIVGYALQCLFHVFCVSLEFKRRRRGEGVVFGDSVSGSSSTTVTGDEEE 166
           + ++P+    + I   ++          LE K +                      + E 
Sbjct: 417 VEKQPK-ESTISI--PSIY---------LELKVKL---------------------ENEY 443

Query: 167 RFHGENDSSVAKNLESANTFLSFLWWIVG-------FYW------ITASGETLISCSPQL 213
             H          ++  N   +F    +        FY               ++    +
Sbjct: 444 ALH-------RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV 496

Query: 214 YWLCVTFLAFDVVFV---MICVGVACLIGIAVCCCLPCILGIL-----YA--LTEREGAT 263
           +         D  F+   +     A             IL  L     Y   + + +   
Sbjct: 497 F--------LDFRFLEQKIRHDSTA-------WNASGSILNTLQQLKFYKPYICDNDPKY 541

Query: 264 EEEIDRLPKFKFSRIDGLEKVNGVLHL-PFC 293
           E  ++ +  F       L K+   L    + 
Sbjct: 542 ERLVNAILDF-------LPKIEENLICSKYT 565

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00