Citrus Sinensis ID: 022606

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290----
Protein Sequence
MDEVVEAVEKAKKEWDEAYAKTQAHIKAIENYGKSREEKEKSSNSLQRLNGLAQDGLNLLNSLHLKLDLLAPQLPTSDQVQSAQSLLQSWKKECNNLRLSLRNANLQAKANMRKAAQEERELLLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERNASTLMTFDESTGVLRKAESEYKGHRSLLMRTRNLLSTMQRQDIIDRVILVLGLILFSCAVLYVVSKRIGLLKLQRQVTAAIKAGMARQPEIRPGAAEDGVNLAQVYRDNAAPNMEVPLQRPMHDEL
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHccccHHHccccccccccccccccccccHHHHHHccc
Coil and Loop (DISEMBL)
MDEVVEAVEKAKKEWDEAYAKTQAHIKAIENYGKSREEKEKSSNSLQRLNGLAQDGLNLLNSLHLKldllapqlptsdqVQSAQSLLQSWKKECNNLRLSLRNANLQAKANMRKAAQEERELLlgggeestIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERNASTLMTFDESTGVLRKAESEYKGHRSLLMRTRNLLSTMQRQDIIDRVILVLGLILFSCAVLYVVSKRIGLLKLQRQVTAAIKAGmarqpeirpgaaedgVNLAQVyrdnaapnmevplqrpmhdel
Flexible Loop (DISEMBL)
MDEVVEAVEKAKKEWDEAYAKTQAHIKAIENYGKSREEKEKSSNSLQRLNGLAQDGLNLLNSLHLKLDLLAPQLPTSDQVQSAQSLLQSWKKECNNLRLSLRNANLQAKANMRKAAQEERElllgggeestirrrnlqtkagmtsaaESITESLRRTRQLMVQEVErnastlmtfdestgvlrkaeseykghrslLMRTRNLLSTMQRQDIIDRVILVLGLILFSCAVLYVVSKRIGLLKLQRQVTAAIKAgmarqpeirpgaaeDGVNLAQVYRDNaapnmevplqrpmhdel
Low Complexity Region (SEG)
MdevveavekakkewdeaYAKTQAHIKAIENYGksreekekssNSLQRLNGLAQDGlnllnslhlkldllAPQLPTSDQVQSAQSLLQSWKKECnnlrlslrnanlQAKANMRKAAQeerelllgggeeSTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERNASTLMTFDESTGVLRKAESEYKGHRSLLMRTRNLLSTMQRQDIIDRVILVLGLILFSCAVLYVVSKRIGLLKLQRQVTAAIKAGMARQPEIRPGAAEDGVNLAQVYRDNAAPNMEVPLQRPMHDEL
Disordered region (IsUnstruct)
****************************************************AQDGLNLLNSLHLKLDLLA******************W***C***************************************************************************************************SLLMRTRNLLSTMQRQDIIDRVILVLGLILFSCAVLYVVSKRIGLLKLQRQVTAAIKAG******************************************
Disordered Region (DISOPRED)
***VVEAVEKAKKEWDEAYAKTQAHIKAIE*****************************LNSLHLKLD******************LQSWKKECNNLRLSLRNANL**********************************************************************************************NLLSTMQRQDIIDRVILVLGLILFSCAVLYVVSKRIGLLKLQRQVTAAIKA*******************************************
Disordered Region (DISEMBL)
**********AKKEWDEAYAKTQAHIKAIENY*************LQRLNGLAQDGLNLLNSLHLKLDLLAPQLP**********LLQSWKKECNNLRLSLRNANLQ**********EERELLLGGGEESTIRRRNLQ************TESLRRTRQLMVQEVERNASTLMTFDESTGVLRKAESEYKGHRSLLMRTRNLLSTMQRQDIIDRVILVLGLILFSCAVLYVVSKRIGLLKLQRQVTAAIKAGMARQPEIRPGAAEDGVNLAQVYRDNAAPNMEVPLQRPMHDEL
Disordered Region (DISPRO)
*DEVVEAVEKAKKEWDEAYAKTQAHIKAIENYGKS********NSLQRLNGLAQDGLNLLNSLHLKLDLLAPQLPTSDQVQSAQSLLQSWKKECNNLRLSLRNANLQAKANMRKAAQEERELLLGGGE******************AESITESLRRTRQLMVQEVERNASTLMTFDESTGVLRKAESEYKGHRSLLMRTRNLLSTMQRQDIIDRVILVLGLILFSCAVLYVVSKRIGLLKLQRQVTAAIKAGMARQPEIRPGAAEDGVNLAQVYRDNAAPNMEVPLQRP*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDEVVEAVEKAKKEWDEAYAKTQAHIKAIENYGKSREEKEKSSNSLQRLNGLAQDGLNLLNSLHLKLDLLAPQLPTSDQxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLLLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERNASTLMTFDESTGVLRKAESEYKGHRSLLMRTRNLLSTMQRQDIIDRVILVLGLILFSCAVLYVVSKRIGLLKLQRQVTAAIKAGMARQPEIRPGAAEDGVNLAQVYRDNAAPNMEVPLQRPMHDEL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	294	2.2.26 [Sep-21-2011]
Q6QD59	228	Vesicle transport protein	yes	no	0.435	0.561	0.335	5e-06
Q8VHI8	228	Vesicle transport protein	yes	no	0.435	0.561	0.328	1e-05
Q12981	228	Vesicle transport protein	no	no	0.435	0.561	0.307	7e-05
O42852	226	Protein transport protein	yes	no	0.316	0.411	0.287	0.0002

>sp|Q6QD59|SEC20_MOUSE Vesicle transport protein SEC20 OS=Mus musculus GN=Bnip1 PE=2 SV=1

 Score = 52.0 bits (123), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/140 (33%), Positives = 74/140 (52%), Gaps = 12/140 (8%)

Query: 100 SLRNANLQAK---ANMRKAAQEERELLLGGGEESTIRRRNLQTKAGMTSAAESITESLRR 156
           S R ANL  K    N+ KA     ELL GG    ++R+R   TK  +   + SITESL  
Sbjct: 94  SWRKANLTCKLAIDNLEKA-----ELLQGGD---SLRQRKT-TKESLAQTSSSITESLMG 144

Query: 157 TRQLMVQEVERNASTLMTFDESTGVLRKAESEYKGHRSLLMRTRNLLSTMQRQDIIDRVI 216
             ++M Q+V+++   + T   S+  L  A  E+K     +   R L++   R+++ D+++
Sbjct: 145 ISRMMSQQVQQSEEAMQTLVSSSRTLLDANEEFKSMSGTIQLGRKLITKYNRRELTDKLL 204

Query: 217 LVLGLILFSCAVLYVVSKRI 236
           + L L LF   VLY+V KR+
Sbjct: 205 IFLALALFLATVLYIVKKRL 224

SNARE that may be involved in targeting and fusion of Golgi-derived retrograde transport vesicles with the ER. Required for maintenance of ER network. Implicated in the suppression of cell death. May be involved in mitochondrial autophagy.
Mus musculus (taxid: 10090)

>sp|Q8VHI8|SEC20_RAT Vesicle transport protein SEC20 OS=Rattus norvegicus GN=Bnip1 PE=2 SV=1

 Score = 50.8 bits (120), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/140 (32%), Positives = 74/140 (52%), Gaps = 12/140 (8%)

Query: 100 SLRNANLQAK---ANMRKAAQEERELLLGGGEESTIRRRNLQTKAGMTSAAESITESLRR 156
           S R ANL  K    N+ KA     ELL GG    ++R+R   TK  +   + +ITESL  
Sbjct: 94  SWRKANLTCKLAIDNLEKA-----ELLQGGD---SLRQRKT-TKESLAQTSSTITESLMG 144

Query: 157 TRQLMVQEVERNASTLMTFDESTGVLRKAESEYKGHRSLLMRTRNLLSTMQRQDIIDRVI 216
             ++M Q+V+++   + T   S+  L  A  E+K     +   R L++   R+++ D+++
Sbjct: 145 ISRMMSQQVQQSEEAMQTLVSSSRTLLDANEEFKSMSGTIQLGRKLITKYNRRELTDKLL 204

Query: 217 LVLGLILFSCAVLYVVSKRI 236
           + L L LF   VLY+V KR+
Sbjct: 205 IFLALALFLATVLYIVKKRL 224

SNARE that may be involved in targeting and fusion of Golgi-derived retrograde transport vesicles with the ER. Required for maintenance of ER network. Implicated in the suppression of cell death. May be involved in mitochondrial autophagy.

Rattus norvegicus (taxid: 10116)

>sp|Q12981|SEC20_HUMAN Vesicle transport protein SEC20 OS=Homo sapiens GN=BNIP1 PE=1 SV=3

 Score = 48.1 bits (113), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 72/140 (51%), Gaps = 12/140 (8%)

Query: 100 SLRNANLQAKA---NMRKAAQEERELLLGGGEESTIRRRNLQTKAGMTSAAESITESLRR 156
           S R ANL  K    N+ KA     ELL GG     + R+   TK  +   + +ITESL  
Sbjct: 94  SWRKANLTCKIAIDNLEKA-----ELLQGGD----LLRQRKTTKESLAQTSSTITESLMG 144

Query: 157 TRQLMVQEVERNASTLMTFDESTGVLRKAESEYKGHRSLLMRTRNLLSTMQRQDIIDRVI 216
             ++M Q+V+++   + +   S+  +  A  E+K     +   R L++   R+++ D+++
Sbjct: 145 ISRMMAQQVQQSEEAMQSLVTSSRTILDANEEFKSMSGTIQLGRKLITKYNRRELTDKLL 204

Query: 217 LVLGLILFSCAVLYVVSKRI 236
           + L L LF   VLY+V KR+
Sbjct: 205 IFLALALFLATVLYIVKKRL 224

SNARE that may be involved in targeting and fusion of Golgi-derived retrograde transport vesicles with the ER. Required for maintenance of ER network. Implicated in the suppression of cell death. May be involved in mitochondrial autophagy.

Homo sapiens (taxid: 9606)

>sp|O42852|SEC20_SCHPO Protein transport protein sec20 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sec20 PE=1 SV=1

 Score = 46.6 bits (109), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 51/94 (54%), Gaps = 1/94 (1%)

Query: 143 MTSAAESITESLRRTRQLMVQEVERNASTLMTFDESTGVLRKAESEYKGHRSLLMRTRNL 202
           +TSA++ +T ++R     MVQ V+ +A   M    ST +L   + +Y G   +L  ++ +
Sbjct: 121 LTSASQ-VTAAMRDIHAQMVQAVDMSAENAMELSSSTNLLETLQEKYFGVEDVLYTSKRI 179

Query: 203 LSTMQRQDIIDRVILVLGLILFSCAVLYVVSKRI 236
           + +++  D  D  ++V G   F   V+Y++ KRI
Sbjct: 180 IKSLKLSDRSDYFLVVSGFGFFIFVVVYLLFKRI 213

SNARE required for targeting and fusion of Golgi-derived retrograde transport vesicles with the ER.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	294
255574857	299	Vesicle transport protein SEC20, putativ	0.996	0.979	0.756	1e-125
359477694	289	PREDICTED: uncharacterized protein LOC10	0.982	1.0	0.748	1e-121
358249088	292	uncharacterized protein LOC100795925 [Gl	0.993	1.0	0.744	1e-117
224107529	300	predicted protein [Populus trichocarpa]	0.993	0.973	0.725	1e-115
357448327	292	hypothetical protein MTR_2g028660 [Medic	0.993	1.0	0.738	1e-115
356532952	293	PREDICTED: uncharacterized protein LOC10	0.993	0.996	0.759	1e-113
297835514	290	sec20 family protein [Arabidopsis lyrata	0.986	1.0	0.687	1e-108
21594318	293	unknown [Arabidopsis thaliana]	0.993	0.996	0.674	1e-107
18404139	293	transport protein SEC20 [Arabidopsis tha	0.993	0.996	0.674	1e-107
11994693	330	unnamed protein product [Arabidopsis tha	0.993	0.884	0.674	1e-106

>gi|255574857|ref|XP_002528335.1| Vesicle transport protein SEC20, putative [Ricinus communis] gi|223532203|gb|EEF34007.1| Vesicle transport protein SEC20, putative [Ricinus communis]

 Score =  452 bits (1164), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 227/300 (75%), Positives = 256/300 (85%), Gaps = 7/300 (2%)

Query: 1   MDEVVEAVEKAKKEWDEAYAKTQAHIKAIENYGKSRE------EKEKSSNSLQRLNGLAQ 54
           M+++ EAVEK KKEW+EAY+K + HIKAIE YGKS         +E++ NSL RLNGLAQ
Sbjct: 1   MEKIEEAVEKVKKEWEEAYSKMKDHIKAIEGYGKSTRLNGGVASQEETVNSLPRLNGLAQ 60

Query: 55  DGLNLLNSLHLKLDLLAPQLPTSDQVQSAQSLLQSWKKECNNLRLSLRNANLQAKANMRK 114
           DGL +L SL  KLDLLAPQLPT + V SAQSLL+SWK +  NLRLSLRNANLQAKANMRK
Sbjct: 61  DGLAVLKSLQFKLDLLAPQLPTHEDVNSAQSLLESWKTQFQNLRLSLRNANLQAKANMRK 120

Query: 115 AAQEERELLLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERNASTLMT 174
           AAQE+RELLLGGGEESTIRRRNLQTKAGMTSAAESITESLRR+RQLMVQEVER+AS+L+T
Sbjct: 121 AAQEQRELLLGGGEESTIRRRNLQTKAGMTSAAESITESLRRSRQLMVQEVERSASSLVT 180

Query: 175 FDESTGVLRKAESEYKGHRSLLMRTRNLLSTMQRQDIIDRVILVLGLILFSCAVLYVVSK 234
           F+ESTGVLRKAESEYKGHRSLL RTRNLLSTMQRQD++DR+IL +G  LFSCAVLYVVSK
Sbjct: 181 FEESTGVLRKAESEYKGHRSLLTRTRNLLSTMQRQDVLDRMILAVGFFLFSCAVLYVVSK 240

Query: 235 RIGLLKLQRQVTAAIKAGMARQPEIRPGAAEDGVNLAQVYRDNAAPNMEVPLQRPMHDEL 294
           RIGLLKLQRQVTA +KAGMA Q +I P    DGV  AQVY DNA P +E+PL++ MHDEL
Sbjct: 241 RIGLLKLQRQVTAILKAGMAGQGKIIPQGVGDGVGFAQVY-DNAVPQVEIPLEQNMHDEL 299

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359477694|ref|XP_003632010.1| PREDICTED: uncharacterized protein LOC100245990 [Vitis vinifera] gi|296083741|emb|CBI23730.3| unnamed protein product [Vitis vinifera]

 Score =  439 bits (1129), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 220/294 (74%), Positives = 250/294 (85%), Gaps = 5/294 (1%)

Query: 1   MDEVVEAVEKAKKEWDEAYAKTQAHIKAIENYGKSREEKEKSSNSLQRLNGLAQDGLNLL 60
           MD+V EAVEKAKK+W+E Y KT  HIKAIE+YGKS ++K    NSL RLNGLAQDGL LL
Sbjct: 1   MDKVTEAVEKAKKDWEETYGKTLDHIKAIEDYGKSSDQK----NSLPRLNGLAQDGLALL 56

Query: 61  NSLHLKLDLLAPQLPTSDQVQSAQSLLQSWKKECNNLRLSLRNANLQAKANMRKAAQEER 120
           +SL   LDLLAPQLPT + +QSA + LQSWK +  +LR SLRNANLQAKANMRKAA+EER
Sbjct: 57  SSLQFNLDLLAPQLPTDEDIQSANTTLQSWKNQIQSLRSSLRNANLQAKANMRKAAKEER 116

Query: 121 ELLLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERNASTLMTFDESTG 180
           ELLLG G ESTIRRRNLQTK GMTSAAE+ITESLRRTRQLMVQEVERN + L+T +ESTG
Sbjct: 117 ELLLGAGGESTIRRRNLQTKTGMTSAAENITESLRRTRQLMVQEVERNTTMLLTNEESTG 176

Query: 181 VLRKAESEYKGHRSLLMRTRNLLSTMQRQDIIDRVILVLGLILFSCAVLYVVSKRIGLLK 240
           VL+KAESEYKGHRSLLMRTRNLL+TMQRQD++DR+IL++G + FSCAVLYVVSKRIGLLK
Sbjct: 177 VLKKAESEYKGHRSLLMRTRNLLTTMQRQDVLDRIILIVGFVFFSCAVLYVVSKRIGLLK 236

Query: 241 LQRQVTAAIKAGMARQPEIRPGAAEDGVNLAQVYRDNAAPNMEVPLQRPMHDEL 294
           LQR VTAAIKAGM RQ  I   AAEDG+NLA V+ DNA   +EVPL++ MHDEL
Sbjct: 237 LQRTVTAAIKAGMVRQANIGQDAAEDGINLAPVH-DNAIRRVEVPLEQHMHDEL 289

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358249088|ref|NP_001239735.1| uncharacterized protein LOC100795925 [Glycine max] gi|255645756|gb|ACU23371.1| unknown [Glycine max]

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 219/294 (74%), Positives = 243/294 (82%), Gaps = 2/294 (0%)

Query: 1   MDEVVEAVEKAKKEWDEAYAKTQAHIKAIENYGKSREEKEKSSNSLQRLNGLAQDGLNLL 60
           MD+VVE  EK KKEWDE Y KTQ HI+AI  YGK    KE+  NSL RLNG+AQDGL LL
Sbjct: 1   MDKVVEEAEKVKKEWDETYKKTQEHIEAIAEYGKPGRAKEEK-NSLARLNGIAQDGLALL 59

Query: 61  NSLHLKLDLLAPQLPTSDQVQSAQSLLQSWKKECNNLRLSLRNANLQAKANMRKAAQEER 120
           +S    LDLLAPQLP+  +VQS ++LLQSWK    NLRL+LRNANLQAKAN+RKAAQEER
Sbjct: 60  SSFLFTLDLLAPQLPSEPEVQSTRALLQSWKTLTQNLRLNLRNANLQAKANLRKAAQEER 119

Query: 121 ELLLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERNASTLMTFDESTG 180
           ELLLGGGEEST+RRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERN STLMT DESTG
Sbjct: 120 ELLLGGGEESTVRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERNTSTLMTLDESTG 179

Query: 181 VLRKAESEYKGHRSLLMRTRNLLSTMQRQDIIDRVILVLGLILFSCAVLYVVSKRIGLLK 240
           VL+KAESEYKGHRSLLMRTRNLLSTMQRQD+IDRVI+ +G +LFS AVLYVV KRIGLL 
Sbjct: 180 VLKKAESEYKGHRSLLMRTRNLLSTMQRQDVIDRVIIGVGFLLFSLAVLYVVYKRIGLLT 239

Query: 241 LQRQVTAAIKAGMARQPEIRPGAAEDGVNLAQVYRDNAAPNMEVPLQRPMHDEL 294
           LQR+VT AIKAGM  Q E+RP A  D +NL QV R +   N E PL++ +HDEL
Sbjct: 240 LQRKVTEAIKAGMVGQAELRPQAVADDLNLHQV-RGDCVHNAEAPLEQRIHDEL 292

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224107529|ref|XP_002314511.1| predicted protein [Populus trichocarpa] gi|118483565|gb|ABK93680.1| unknown [Populus trichocarpa] gi|222863551|gb|EEF00682.1| predicted protein [Populus trichocarpa]

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 219/302 (72%), Positives = 250/302 (82%), Gaps = 10/302 (3%)

Query: 1   MDEVVEAVEKAKKEWDEAYAKTQAHIKAIENYGKSREEKEKSSNSLQRLNGLAQDGLNLL 60
           MDEVVEAVEKAKKEW+E Y+K Q H+KAI++Y  +      SS SL RLNGLAQD L LL
Sbjct: 1   MDEVVEAVEKAKKEWEETYSKAQQHMKAIQDY-DAISSSSSSSVSLPRLNGLAQDCLALL 59

Query: 61  NSLHLKLDLLAPQLPTSDQVQSAQSLLQSWKKECNNLRLSLRNANLQAKANMRKAAQEER 120
            SL  +LDLLAPQLPT DQ++SA  LL SWK+  ++LR SLRNANLQAKANMRKAAQ+ER
Sbjct: 60  QSLQFQLDLLAPQLPTDDQLKSALRLLDSWKQLYHDLRASLRNANLQAKANMRKAAQQER 119

Query: 121 ELLLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERNASTLMTFDESTG 180
           ELLLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVER+  TLMTF+EST 
Sbjct: 120 ELLLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERSTGTLMTFEESTT 179

Query: 181 VLRKAESEYKGHRSLLMRTRNLLSTMQRQDIIDRVILVLGLILFSCAVLYVVSKRIGLLK 240
           VLRKAE+EYKGHRSLL RTRNLLSTMQRQD++DRVIL +G  LFSCAVLYVVSKRIG+L 
Sbjct: 180 VLRKAETEYKGHRSLLSRTRNLLSTMQRQDVLDRVILAVGFFLFSCAVLYVVSKRIGVLA 239

Query: 241 LQRQVTAAIKAGMARQPEIR--------PGAAEDGVNLAQVYRDNAAPNMEVPLQRPMHD 292
           LQR+VTAA+KAGMA +  I+        P   EDG+++AQV  DNA P +EVP+++ MHD
Sbjct: 240 LQRKVTAALKAGMAGKGAIKARAVEDAIPRVIEDGIDVAQVL-DNAVPKVEVPVEQAMHD 298

Query: 293 EL 294
           EL
Sbjct: 299 EL 300

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357448327|ref|XP_003594439.1| hypothetical protein MTR_2g028660 [Medicago truncatula] gi|355483487|gb|AES64690.1| hypothetical protein MTR_2g028660 [Medicago truncatula]

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 217/294 (73%), Positives = 242/294 (82%), Gaps = 2/294 (0%)

Query: 1   MDEVVEAVEKAKKEWDEAYAKTQAHIKAIENYGKSREEKEKSSNSLQRLNGLAQDGLNLL 60
           MD+VVE VE+ KKEW+E   KTQ HI AI  YGKS   K++  NSL RLNG+AQDGL LL
Sbjct: 1   MDKVVEEVERVKKEWNETCIKTQDHINAIGEYGKSGRSKDEK-NSLARLNGIAQDGLALL 59

Query: 61  NSLHLKLDLLAPQLPTSDQVQSAQSLLQSWKKECNNLRLSLRNANLQAKANMRKAAQEER 120
           +SLH  LDLLAPQLPT  +V SA+ LLQSWK    NLR+SLRNANLQAKAN+RKAAQEER
Sbjct: 60  SSLHFNLDLLAPQLPTQQEVDSARQLLQSWKTLTQNLRISLRNANLQAKANLRKAAQEER 119

Query: 121 ELLLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERNASTLMTFDESTG 180
           ELLLGGGEEST+RRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERN STLMT DESTG
Sbjct: 120 ELLLGGGEESTVRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERNTSTLMTLDESTG 179

Query: 181 VLRKAESEYKGHRSLLMRTRNLLSTMQRQDIIDRVILVLGLILFSCAVLYVVSKRIGLLK 240
           VL+KAESEYKGHRSLL RTRNLLSTMQRQDIIDRVIL +G +LFS AVLYVVSKRIG+L 
Sbjct: 180 VLKKAESEYKGHRSLLTRTRNLLSTMQRQDIIDRVILGVGFLLFSLAVLYVVSKRIGILT 239

Query: 241 LQRQVTAAIKAGMARQPEIRPGAAEDGVNLAQVYRDNAAPNMEVPLQRPMHDEL 294
           LQR+VT AIKAGM  Q  +RP A  + +N  Q  R +   N+E PL++ +HDEL
Sbjct: 240 LQRKVTGAIKAGMMGQAGLRPQAVAENMNPHQA-RVDRVHNIEAPLEQQIHDEL 292

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356532952|ref|XP_003535033.1| PREDICTED: uncharacterized protein LOC100812474 [Glycine max]

 Score =  412 bits (1059), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 224/295 (75%), Positives = 248/295 (84%), Gaps = 3/295 (1%)

Query: 1   MDEVVEAVEKAKKEWDEAYAKTQAHIKAIENYGKSREEKEKSSNSLQRLNGLAQDGLNLL 60
           MD+VVE VEK KKEWDE Y KTQ HI+AI +YGKS   KE++ NSL RLNG+AQDGL LL
Sbjct: 1   MDKVVEEVEKVKKEWDETYKKTQEHIEAIADYGKSARAKEEN-NSLARLNGIAQDGLALL 59

Query: 61  NSLHLKLDLLAPQLPTSDQVQSAQSLLQSWKKECNNLRLSLRNANLQAKANMRKAAQEER 120
           +S    LDLLAPQLP+  +VQS ++LLQS K    NLRL+LRNANLQAKAN+RKAAQEER
Sbjct: 60  SSFLFTLDLLAPQLPSEPEVQSTRALLQSSKTLTQNLRLNLRNANLQAKANLRKAAQEER 119

Query: 121 ELLLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERNASTLMTFDESTG 180
           ELLLGGGEEST+RRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERN STLMT DESTG
Sbjct: 120 ELLLGGGEESTVRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERNTSTLMTLDESTG 179

Query: 181 VLRKAESEYKGHRSLLMRTRNLLSTMQRQDIIDRVILVLGLILFSCAVLYVVSKRIGLLK 240
           VL+KAESEYKGHRSLLMRTRNLLSTMQRQD+IDRVI+ +G +LFS AVLYVVSKRIGLL 
Sbjct: 180 VLKKAESEYKGHRSLLMRTRNLLSTMQRQDVIDRVIIGVGFLLFSLAVLYVVSKRIGLLT 239

Query: 241 LQRQVTAAIKAGMARQPEIRPGAAEDGVNLAQVYRDNAAP-NMEVPLQRPMHDEL 294
           LQR+VT AIKAGM  Q E+RP A  D VNL QV R N  P N E PL++ +HDEL
Sbjct: 240 LQRKVTEAIKAGMVGQAELRPQAVADDVNLHQV-RGNRVPNNAEAPLEQRIHDEL 293

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297835514|ref|XP_002885639.1| sec20 family protein [Arabidopsis lyrata subsp. lyrata] gi|297331479|gb|EFH61898.1| sec20 family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 202/294 (68%), Positives = 237/294 (80%), Gaps = 4/294 (1%)

Query: 1   MDEVVEAVEKAKKEWDEAYAKTQAHIKAIENYGKSREEKEKSSNSLQRLNGLAQDGLNLL 60
           MDEVV  VEK K+EW+EAY KT  HI AI+ YGKSR  +EK S  LQRLNGLAQDGL+LL
Sbjct: 1   MDEVVVEVEKTKREWEEAYEKTIEHIMAIQEYGKSRRGEEKIS--LQRLNGLAQDGLSLL 58

Query: 61  NSLHLKLDLLAPQLPTSDQVQSAQSLLQSWKKECNNLRLSLRNANLQAKANMRKAAQEER 120
           NSL   LDLLAPQLP+ DQVQS QSLL++WK + ++LR++LR+ANLQAK NMRKAAQEER
Sbjct: 59  NSLQFNLDLLAPQLPSDDQVQSTQSLLETWKNQYHSLRVNLRSANLQAKDNMRKAAQEER 118

Query: 121 ELLLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERNASTLMTFDESTG 180
           ELLLGGG EST+ RR  Q  AG+TS AESITESLRR+RQLMVQEVER+ +TL+ FDESTG
Sbjct: 119 ELLLGGGTESTVLRRKRQANAGVTSDAESITESLRRSRQLMVQEVERSTNTLVAFDESTG 178

Query: 181 VLRKAESEYKGHRSLLMRTRNLLSTMQRQDIIDRVILVLGLILFSCAVLYVVSKRIGLLK 240
           VL+KAESEYKGHRSLL RTRNLLSTMQRQD+IDR+IL++G  LF  AV+YVVSKRIG+LK
Sbjct: 179 VLKKAESEYKGHRSLLSRTRNLLSTMQRQDVIDRIILIVGFSLFVFAVVYVVSKRIGILK 238

Query: 241 LQRQVTAAIKAGMARQPEIRPGAAEDGVNLAQVYRDNAAPNMEVPLQRPMHDEL 294
           LQR  TAAIKA +A +     G  +D + L Q +  N  P + +PLQ+ MHDEL
Sbjct: 239 LQRMATAAIKAQLAGKGA--NGVGDDVMPLGQQFDGNTVPTVNIPLQQRMHDEL 290

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21594318|gb|AAM65994.1| unknown [Arabidopsis thaliana]

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 199/295 (67%), Positives = 236/295 (80%), Gaps = 3/295 (1%)

Query: 1   MDEVVEAVEKAKKEWDEAYAKTQAHIKAIENYGKSRE-EKEKSSNSLQRLNGLAQDGLNL 59
           MDEVV  VEK K+EW+EAY KT  HI +I+ YGKSR  +  +   SLQRLNGLAQDGL+L
Sbjct: 1   MDEVVVEVEKTKREWEEAYEKTIGHIISIQQYGKSRRGDGGEEKFSLQRLNGLAQDGLSL 60

Query: 60  LNSLHLKLDLLAPQLPTSDQVQSAQSLLQSWKKECNNLRLSLRNANLQAKANMRKAAQEE 119
           LNSL   LDLLAPQLP+ DQVQS QSLL++WK + ++LR++LR+ANLQAK NMRKAAQEE
Sbjct: 61  LNSLQFNLDLLAPQLPSDDQVQSTQSLLETWKNQYHSLRVNLRSANLQAKDNMRKAAQEE 120

Query: 120 RELLLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERNASTLMTFDEST 179
           RELLLGGG EST+ RR  Q  AG+TS AESITESLRR+RQLMVQEVER+ +TL+ FDEST
Sbjct: 121 RELLLGGGTESTVLRRKRQANAGVTSDAESITESLRRSRQLMVQEVERSTNTLVAFDEST 180

Query: 180 GVLRKAESEYKGHRSLLMRTRNLLSTMQRQDIIDRVILVLGLILFSCAVLYVVSKRIGLL 239
           GVL+KAESEYKGHRSLL RTRNLLSTMQRQD+IDR+IL++G  LF  AV+YVVSKRIG+L
Sbjct: 181 GVLKKAESEYKGHRSLLSRTRNLLSTMQRQDVIDRIILIVGFSLFVFAVVYVVSKRIGIL 240

Query: 240 KLQRQVTAAIKAGMARQPEIRPGAAEDGVNLAQVYRDNAAPNMEVPLQRPMHDEL 294
           KLQR  TAAIKA +A +     G  +D + L Q +  N  P + +PLQ+ MHDEL
Sbjct: 241 KLQRMATAAIKAQLAGKAA--KGVGDDVMPLGQQFDGNTVPTVNIPLQQRMHDEL 293

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18404139|ref|NP_566746.1| transport protein SEC20 [Arabidopsis thaliana] gi|94442435|gb|ABF19005.1| At3g24315 [Arabidopsis thaliana] gi|332643367|gb|AEE76888.1| transport protein SEC20 [Arabidopsis thaliana]

 Score =  392 bits (1007), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 199/295 (67%), Positives = 236/295 (80%), Gaps = 3/295 (1%)

Query: 1   MDEVVEAVEKAKKEWDEAYAKTQAHIKAIENYGKSRE-EKEKSSNSLQRLNGLAQDGLNL 59
           MDEVV  VEK K+EW+EAY KT  HI +I+ YGKSR  +  +   SLQRLNGLAQDGL+L
Sbjct: 1   MDEVVVEVEKTKREWEEAYEKTIGHIISIQQYGKSRRGDGGEEKFSLQRLNGLAQDGLSL 60

Query: 60  LNSLHLKLDLLAPQLPTSDQVQSAQSLLQSWKKECNNLRLSLRNANLQAKANMRKAAQEE 119
           LNSL   LDLLAPQLP+ DQVQS QSLL++WK + ++LR++LR+ANLQAK NMRKAAQEE
Sbjct: 61  LNSLQFNLDLLAPQLPSDDQVQSTQSLLETWKNQYHSLRVNLRSANLQAKDNMRKAAQEE 120

Query: 120 RELLLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERNASTLMTFDEST 179
           RELLLGGG EST+ RR  Q  AG+TS AESITESLRR+RQLMVQEVER+ +TL+ FDEST
Sbjct: 121 RELLLGGGTESTVLRRKRQANAGVTSDAESITESLRRSRQLMVQEVERSTNTLVAFDEST 180

Query: 180 GVLRKAESEYKGHRSLLMRTRNLLSTMQRQDIIDRVILVLGLILFSCAVLYVVSKRIGLL 239
           GVL+KAESEYKGHRSLL RTRNLLSTMQRQD+IDR+IL++G  LF  AV+YVVSKRIG+L
Sbjct: 181 GVLKKAESEYKGHRSLLSRTRNLLSTMQRQDVIDRIILIVGFSLFVFAVVYVVSKRIGIL 240

Query: 240 KLQRQVTAAIKAGMARQPEIRPGAAEDGVNLAQVYRDNAAPNMEVPLQRPMHDEL 294
           KLQR  TAAIKA +A +     G  +D + L Q +  N  P + +PLQ+ MHDEL
Sbjct: 241 KLQRMATAAIKAQLAGKAA--NGVGDDVMPLGQQFDGNTVPTVNIPLQQRMHDEL 293

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|11994693|dbj|BAB02931.1| unnamed protein product [Arabidopsis thaliana]

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 199/295 (67%), Positives = 236/295 (80%), Gaps = 3/295 (1%)

Query: 1   MDEVVEAVEKAKKEWDEAYAKTQAHIKAIENYGKSRE-EKEKSSNSLQRLNGLAQDGLNL 59
           MDEVV  VEK K+EW+EAY KT  HI +I+ YGKSR  +  +   SLQRLNGLAQDGL+L
Sbjct: 38  MDEVVVEVEKTKREWEEAYEKTIGHIISIQQYGKSRRGDGGEEKFSLQRLNGLAQDGLSL 97

Query: 60  LNSLHLKLDLLAPQLPTSDQVQSAQSLLQSWKKECNNLRLSLRNANLQAKANMRKAAQEE 119
           LNSL   LDLLAPQLP+ DQVQS QSLL++WK + ++LR++LR+ANLQAK NMRKAAQEE
Sbjct: 98  LNSLQFNLDLLAPQLPSDDQVQSTQSLLETWKNQYHSLRVNLRSANLQAKDNMRKAAQEE 157

Query: 120 RELLLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERNASTLMTFDEST 179
           RELLLGGG EST+ RR  Q  AG+TS AESITESLRR+RQLMVQEVER+ +TL+ FDEST
Sbjct: 158 RELLLGGGTESTVLRRKRQANAGVTSDAESITESLRRSRQLMVQEVERSTNTLVAFDEST 217

Query: 180 GVLRKAESEYKGHRSLLMRTRNLLSTMQRQDIIDRVILVLGLILFSCAVLYVVSKRIGLL 239
           GVL+KAESEYKGHRSLL RTRNLLSTMQRQD+IDR+IL++G  LF  AV+YVVSKRIG+L
Sbjct: 218 GVLKKAESEYKGHRSLLSRTRNLLSTMQRQDVIDRIILIVGFSLFVFAVVYVVSKRIGIL 277

Query: 240 KLQRQVTAAIKAGMARQPEIRPGAAEDGVNLAQVYRDNAAPNMEVPLQRPMHDEL 294
           KLQR  TAAIKA +A +     G  +D + L Q +  N  P + +PLQ+ MHDEL
Sbjct: 278 KLQRMATAAIKAQLAGKAA--NGVGDDVMPLGQQFDGNTVPTVNIPLQQRMHDEL 330

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	294
TAIR|locus:505006367	293	AtSec20 "AT3G24315" [Arabidops	0.931	0.935	0.559	5.5e-70
DICTYBASE|DDB_G0267646	243	sec20 "sec20 family protein" [	0.540	0.654	0.240	2.9e-12
MGI|MGI:109328	228	Bnip1 "BCL2/adenovirus E1B int	0.431	0.557	0.294	1.2e-10
RGD|620799	228	Bnip1 "BCL2/adenovirus E1B int	0.431	0.557	0.286	4e-10
UNIPROTKB|E2QRZ2	228	BNIP1 "Uncharacterized protein	0.350	0.451	0.291	1.2e-09
UNIPROTKB|Q12981	228	BNIP1 "Vesicle transport prote	0.350	0.451	0.281	4.8e-09
UNIPROTKB|F1SJY7	228	BNIP1 "Uncharacterized protein	0.350	0.451	0.281	9.5e-09
UNIPROTKB|F1N353	228	BNIP1 "Uncharacterized protein	0.350	0.451	0.271	2.5e-08
UNIPROTKB|E2QRY7	86	BNIP1 "Uncharacterized protein	0.265	0.906	0.282	4.8e-07
UNIPROTKB|G4MTY1	432	MGG_01600 "Sec20 domain-contai	0.319	0.217	0.319	2.9e-06

TAIR|locus:505006367 AtSec20 "AT3G24315" [Arabidopsis thaliana (taxid:3702)]

 Score = 709 (254.6 bits), Expect = 5.5e-70, P = 5.5e-70
 Identities = 155/277 (55%), Positives = 182/277 (65%)

Query:    19 YAKTQAHIKAIENYGXXXXXXXXXXN-SLQRLNGLAQDGXXXXXXXXXXXXXXAPQLPTS 77
             Y KT  HI +I+ YG            SLQRLNGLAQDG              APQLP+ 
Sbjct:    19 YEKTIGHIISIQQYGKSRRGDGGEEKFSLQRLNGLAQDGLSLLNSLQFNLDLLAPQLPSD 78

Query:    78 DQVQSAQSLLQSWKKECXXXXXXXXXXXXQAKANMRKAAQXXXXXXXXXXXXSTIRRRNL 137
             DQVQS QSLL++WK +             QAK NMRKAAQ            ST+ RR  
Sbjct:    79 DQVQSTQSLLETWKNQYHSLRVNLRSANLQAKDNMRKAAQEERELLLGGGTESTVLRRKR 138

Query:   138 QTKAGMTSAAESITESLRRTRQLMVQEVERNASTLMTFDESTGVLRKAESEYKGHRSLLM 197
             Q  AG+TS AESITESLRR+RQLMVQEVER+ +TL+ FDESTGVL+KAESEYKGHRSLL 
Sbjct:   139 QANAGVTSDAESITESLRRSRQLMVQEVERSTNTLVAFDESTGVLKKAESEYKGHRSLLS 198

Query:   198 RTRNLLSTMQRQDIIDRVILVLGLILFSCAVLYVVSKRIGLLKLQRQVTAAIKAGMARQP 257
             RTRNLLSTMQRQD+IDR+IL++G  LF  AV+YVVSKRIG+LKLQR  TAAIKA +A + 
Sbjct:   199 RTRNLLSTMQRQDVIDRIILIVGFSLFVFAVVYVVSKRIGILKLQRMATAAIKAQLAGKA 258

Query:   258 EIRPGAAEDGVNLAQVYRDNAAPNMEVPLQRPMHDEL 294
                 G  +D + L Q +  N  P + +PLQ+ MHDEL
Sbjct:   259 A--NGVGDDVMPLGQQFDGNTVPTVNIPLQQRMHDEL 293

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0030244 "cellulose biosynthetic process" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

DICTYBASE|DDB_G0267646 sec20 "sec20 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 166 (63.5 bits), Expect = 2.9e-12, P = 2.9e-12
 Identities = 39/162 (24%), Positives = 83/162 (51%)

Query:    79 QVQSAQSLLQSWKKECXXXXXXXXXXXXQAKANMRKAAQXXXXXXXXXXXXSTIRRR--- 135
             +++ ++  LQ  K+E             Q   N+++  +             T + R   
Sbjct:    64 EIEQSKKELQFHKEEYENLKVLQRKANLQTSKNLQEKYKQNKKLLLSGSEKITQQSRFYS 123

Query:   136 NLQTKAGMTSAAESITESLRRTRQLMVQEVERNASTLMTFDESTGVLRKAESEYKGHRSL 195
             N  +KA +   + S+T++L+RTR  M  +V R++  L   +ES+ ++ K  S+ K + ++
Sbjct:   124 NQNSKADLLKTSISLTDTLKRTRNFMNTQVSRSSDILHEINESSKIVDKTVSQQKEYENI 183

Query:   196 LMRTRNLLSTMQRQDIIDRVILVLGLILFSCAVLYVVSKRIG 237
                 ++LL+ ++R+D+ D++++  GLI+F   V+Y++  R G
Sbjct:   184 TTEGKSLLTKLKRRDMTDKLLIWFGLIVFLLVVVYILKVRFG 225

GO:0044351 "macropinocytosis" evidence=RCA

MGI|MGI:109328 Bnip1 "BCL2/adenovirus E1B interacting protein 1" [Mus musculus (taxid:10090)]

 Score = 157 (60.3 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 38/129 (29%), Positives = 65/129 (50%)

Query:   109 KANMR-KAAQXXXXXXXXXXXXSTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVER 167
             KAN+  K A              ++R+R   TK  +   + SITESL    ++M Q+V++
Sbjct:    97 KANLTCKLAIDNLEKAELLQGGDSLRQRKT-TKESLAQTSSSITESLMGISRMMSQQVQQ 155

Query:   168 NASTLMTFDESTGVLRKAESEYKGHRSLLMRTRNLLSTMQRQDIIDRVILVLGLILFSCA 227
             +   + T   S+  L  A  E+K     +   R L++   R+++ D++++ L L LF   
Sbjct:   156 SEEAMQTLVSSSRTLLDANEEFKSMSGTIQLGRKLITKYNRRELTDKLLIFLALALFLAT 215

Query:   228 VLYVVSKRI 236
             VLY+V KR+
Sbjct:   216 VLYIVKKRL 224

GO:0003674 "molecular_function" evidence=ND

GO:0005635 "nuclear envelope" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006914 "autophagy" evidence=IEA

GO:0006915 "apoptotic process" evidence=ISO

GO:0006917 "induction of apoptosis" evidence=ISO

GO:0007029 "endoplasmic reticulum organization" evidence=ISO

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0016320 "endoplasmic reticulum membrane fusion" evidence=ISO

GO:0031201 "SNARE complex" evidence=ISO

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

RGD|620799 Bnip1 "BCL2/adenovirus E1B interacting protein 1" [Rattus norvegicus (taxid:10116)]

 Score = 154 (59.3 bits), Expect = 4.0e-10, P = 4.0e-10
 Identities = 37/129 (28%), Positives = 65/129 (50%)

Query:   109 KANMR-KAAQXXXXXXXXXXXXSTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVER 167
             KAN+  K A              ++R+R   TK  +   + +ITESL    ++M Q+V++
Sbjct:    97 KANLTCKLAIDNLEKAELLQGGDSLRQRKT-TKESLAQTSSTITESLMGISRMMSQQVQQ 155

Query:   168 NASTLMTFDESTGVLRKAESEYKGHRSLLMRTRNLLSTMQRQDIIDRVILVLGLILFSCA 227
             +   + T   S+  L  A  E+K     +   R L++   R+++ D++++ L L LF   
Sbjct:   156 SEEAMQTLVSSSRTLLDANEEFKSMSGTIQLGRKLITKYNRRELTDKLLIFLALALFLAT 215

Query:   228 VLYVVSKRI 236
             VLY+V KR+
Sbjct:   216 VLYIVKKRL 224

GO:0000139 "Golgi membrane" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005635 "nuclear envelope" evidence=ISO;ISS

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=ISO;ISS

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0006914 "autophagy" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEP;ISO

GO:0006917 "induction of apoptosis" evidence=ISO;ISS

GO:0007029 "endoplasmic reticulum organization" evidence=ISO;ISS

GO:0015031 "protein transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0016320 "endoplasmic reticulum membrane fusion" evidence=ISO;ISS

GO:0031201 "SNARE complex" evidence=ISO;ISS

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO;ISS

UNIPROTKB|E2QRZ2 BNIP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 151 (58.2 bits), Expect = 1.2e-09, P = 1.2e-09
 Identities = 30/103 (29%), Positives = 56/103 (54%)

Query:   134 RRNLQTKAGMTSAAESITESLRRTRQLMVQEVERNASTLMTFDESTGVLRKAESEYKGHR 193
             R+   TK  +   + +ITESL    ++M Q+V+++   + T   S+  +  A  E+K   
Sbjct:   122 RQRKTTKESLAQTSSAITESLMGISRMMSQQVQQSEEAMQTLANSSRTILDANEEFKSMS 181

Query:   194 SLLMRTRNLLSTMQRQDIIDRVILVLGLILFSCAVLYVVSKRI 236
               +   R L++   R+++ D++++ L L LF   VLY+V KR+
Sbjct:   182 GTIQLGRKLITKYNRRELTDKLLIFLALALFLATVLYIVKKRL 224

GO:0031201 "SNARE complex" evidence=IEA

GO:0016320 "endoplasmic reticulum membrane fusion" evidence=IEA

GO:0007029 "endoplasmic reticulum organization" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005635 "nuclear envelope" evidence=IEA

UNIPROTKB|Q12981 BNIP1 "Vesicle transport protein SEC20" [Homo sapiens (taxid:9606)]

 Score = 147 (56.8 bits), Expect = 4.8e-09, P = 4.8e-09
 Identities = 29/103 (28%), Positives = 56/103 (54%)

Query:   134 RRNLQTKAGMTSAAESITESLRRTRQLMVQEVERNASTLMTFDESTGVLRKAESEYKGHR 193
             R+   TK  +   + +ITESL    ++M Q+V+++   + +   S+  +  A  E+K   
Sbjct:   122 RQRKTTKESLAQTSSTITESLMGISRMMAQQVQQSEEAMQSLVTSSRTILDANEEFKSMS 181

Query:   194 SLLMRTRNLLSTMQRQDIIDRVILVLGLILFSCAVLYVVSKRI 236
               +   R L++   R+++ D++++ L L LF   VLY+V KR+
Sbjct:   182 GTIQLGRKLITKYNRRELTDKLLIFLALALFLATVLYIVKKRL 224

GO:0006914 "autophagy" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005635 "nuclear envelope" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

GO:0043066 "negative regulation of apoptotic process" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0006915 "apoptotic process" evidence=IPI

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0006917 "induction of apoptosis" evidence=IMP

GO:0007029 "endoplasmic reticulum organization" evidence=IMP

GO:0016320 "endoplasmic reticulum membrane fusion" evidence=IMP

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=TAS

GO:0031201 "SNARE complex" evidence=IDA

UNIPROTKB|F1SJY7 BNIP1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 145 (56.1 bits), Expect = 9.5e-09, P = 9.5e-09
 Identities = 29/103 (28%), Positives = 55/103 (53%)

Query:   134 RRNLQTKAGMTSAAESITESLRRTRQLMVQEVERNASTLMTFDESTGVLRKAESEYKGHR 193
             R+    K  +   + +ITESL    ++M Q+V+++   + T   S+  +  A  E+K   
Sbjct:   122 RQRKTAKESLAQTSSTITESLMGISRMMSQQVQQSEEAMQTLVNSSRTILDANEEFKSMS 181

Query:   194 SLLMRTRNLLSTMQRQDIIDRVILVLGLILFSCAVLYVVSKRI 236
               +   R L++   R+++ D++++ L L LF   VLY+V KR+
Sbjct:   182 GTIQLGRKLITKYNRRELTDKLLIFLALALFLATVLYIVKKRL 224

GO:0031201 "SNARE complex" evidence=IEA

GO:0016320 "endoplasmic reticulum membrane fusion" evidence=IEA

GO:0007029 "endoplasmic reticulum organization" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005635 "nuclear envelope" evidence=IEA

UNIPROTKB|F1N353 BNIP1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 142 (55.0 bits), Expect = 2.5e-08, P = 2.5e-08
 Identities = 28/103 (27%), Positives = 55/103 (53%)

Query:   134 RRNLQTKAGMTSAAESITESLRRTRQLMVQEVERNASTLMTFDESTGVLRKAESEYKGHR 193
             R+    K  +   + +ITESL    ++M Q+V+++   + T   S+  +  A  E+K   
Sbjct:   122 RQRKTAKESLAQTSSAITESLMGISRMMSQQVQQSEEAMQTLVNSSRTILDANEEFKSMS 181

Query:   194 SLLMRTRNLLSTMQRQDIIDRVILVLGLILFSCAVLYVVSKRI 236
               +   R L++   R+++ D++++ L L LF   VLY++ KR+
Sbjct:   182 GTIQLGRKLITKYNRRELTDKLLIFLALALFLATVLYILKKRL 224

GO:0031201 "SNARE complex" evidence=IEA

GO:0016320 "endoplasmic reticulum membrane fusion" evidence=IEA

GO:0007029 "endoplasmic reticulum organization" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005635 "nuclear envelope" evidence=IEA

UNIPROTKB|E2QRY7 BNIP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 118 (46.6 bits), Expect = 4.8e-07, P = 4.8e-07
 Identities = 22/78 (28%), Positives = 44/78 (56%)

Query:   159 QLMVQEVERNASTLMTFDESTGVLRKAESEYKGHRSLLMRTRNLLSTMQRQDIIDRVILV 218
             ++M Q+V+++   + T   S+  +  A  E+K     +   R L++   R+++ D++++ 
Sbjct:     5 RMMSQQVQQSEEAMQTLANSSRTILDANEEFKSMSGTIQLGRKLITKYNRRELTDKLLIF 64

Query:   219 LGLILFSCAVLYVVSKRI 236
             L L LF   VLY+V KR+
Sbjct:    65 LALALFLATVLYIVKKRL 82

GO:0031201 "SNARE complex" evidence=IEA

GO:0016320 "endoplasmic reticulum membrane fusion" evidence=IEA

GO:0007029 "endoplasmic reticulum organization" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005635 "nuclear envelope" evidence=IEA

UNIPROTKB|G4MTY1 MGG_01600 "Sec20 domain-containing protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 132 (51.5 bits), Expect = 2.9e-06, P = 2.9e-06
 Identities = 30/94 (31%), Positives = 47/94 (50%)

Query:   143 MTSAAESITESLRRTRQLMVQEVERNASTLMTFDESTGVLRKAESEYKGHRSLLMRTRNL 202
             +  AA ++T SLRRT  LM  E+ R+A       EST  +R+ +  Y G   +L  +R+L
Sbjct:   190 VVGAAHNVTSSLRRTHDLMAAELARSAYAAQALAESTAAMRELDQRYSGLDGMLAASRDL 249

Query:   203 LSTMQRQDIIDRVILVLGLILFSCAVLYVVSKRI 236
             L T+ R    D   L   L +      ++V +R+
Sbjct:   250 LGTLLRSQKSDTWYLQTALYMLLATAAWLVFRRL 283

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pm.C_LG_X0143	SubName- Full=Putative uncharacterized protein; (301 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	eugene3.00101883	hypothetical protein (312 aa)						•	•		0.835
	eugene3.01580030	hypothetical protein (219 aa)						•			0.800
	estExt_fgenesh4_pm.C_LG_III0135	hypothetical protein (218 aa)						•			0.800
	estExt_fgenesh4_pg.C_LG_XVIII1135	Ca2+ antiporter/cation exchanger (239 aa)						•			0.800
	eugene3.00002043	hypothetical protein (767 aa)							•		0.428

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	294
pfam03908	92	pfam03908, Sec20, Sec20	3e-29

>gnl|CDD|112708 pfam03908, Sec20, Sec20

 Score =  106 bits (267), Expect = 3e-29
 Identities = 40/92 (43%), Positives = 53/92 (57%)

Query: 145 SAAESITESLRRTRQLMVQEVERNASTLMTFDESTGVLRKAESEYKGHRSLLMRTRNLLS 204
           S A+ ITESLRR  QL+VQ V ++A  L     ST  L KA  EYK    +L R+R L+ 
Sbjct: 1   SQAKQITESLRRISQLLVQGVLQSALNLDELVASTNSLEKANEEYKQFEGVLSRSRKLVK 60

Query: 205 TMQRQDIIDRVILVLGLILFSCAVLYVVSKRI 236
            ++R+D  D+ ++ L    F   V YVV KRI
Sbjct: 61  KLERRDHTDKRLVYLSFGFFLACVSYVVWKRI 92

Sec20 is a membrane glycoprotein associated with secretory pathway. Length = 92

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	294
KOG1666	220	consensus V-SNARE [Intracellular trafficking, secr	100.0
KOG3251	213	consensus Golgi SNAP receptor complex member [Intr	99.95
PF03908	92	Sec20: Sec20; InterPro: IPR005606 Sec20 is a membr	99.91
KOG3208	231	consensus SNARE protein GS28 [Intracellular traffi	99.27
PF12352	66	V-SNARE_C: Snare region anchored in the vesicle me	98.97
PF05008	79	V-SNARE: Vesicle transport v-SNARE protein N-termi	98.69
KOG0812	311	consensus SNARE protein SED5/Syntaxin 5 [Intracell	97.1
PF09753	251	Use1: Membrane fusion protein Use1; InterPro: IPR0	97.02
KOG3385	118	consensus V-SNARE [Intracellular trafficking, secr	96.54
KOG3202	235	consensus SNARE protein TLG1/Syntaxin 6 [Intracell	96.52
PF00957	89	Synaptobrevin: Synaptobrevin; InterPro: IPR001388	95.68
KOG0810	297	consensus SNARE protein Syntaxin 1 and related pro	95.21
KOG0809	305	consensus SNARE protein TLG2/Syntaxin 16 [Intracel	95.05
PF00957	89	Synaptobrevin: Synaptobrevin; InterPro: IPR001388	94.91
KOG0860	116	consensus Synaptobrevin/VAMP-like protein [Intrace	91.65
KOG2129	552	consensus Uncharacterized conserved protein H4 [Fu	90.5
PRK10884	206	SH3 domain-containing protein; Provisional	89.6
COG5074	280	t-SNARE complex subunit, syntaxin [Intracellular t	87.31
KOG2678	244	consensus Predicted membrane protein [Function unk	85.87
KOG1666	220	consensus V-SNARE [Intracellular trafficking, secr	85.87
PF12273	130	RCR: Chitin synthesis regulation, resistance to Co	84.88
KOG0811	269	consensus SNARE protein PEP12/VAM3/Syntaxin 7/Synt	82.94
TIGR00383	318	corA magnesium Mg(2+) and cobalt Co(2+) transport	81.7
KOG3894	316	consensus SNARE protein Syntaxin 18/UFE1 [Intracel	81.68
PF09889	59	DUF2116: Uncharacterized protein containing a Zn-r	80.49

>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.8e-31  Score=232.81  Aligned_cols=213  Identities=20%  Similarity=0.290  Sum_probs=182.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHhHHHH
Q 022606            4 VVEAVEKAKKEWDEAYAKTQAHIKAIENYGKSREEKEKSSNSLQRLNGLAQDGLNLLNSLHLKLDLLAPQLPTSDQVQSA   83 (294)
Q Consensus         4 ~~~~~~~~~~~~~~l~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~l~~~ie~ldl~a~~~~~~~~r~~~   83 (294)
                      |++.||+||++||++..+++.+|..+.+..  +.   +++..+.+    |...+.+++.+|++||++|+.+| |+-|..+
T Consensus         1 ms~~fe~yEqqy~~l~a~it~k~~~~~~~~--~~---ekk~~l~~----i~~~leEa~ell~qMdlEvr~lp-~~~Rs~~   70 (220)
T KOG1666|consen    1 MSSLFEGYEQQYRELSAEITKKIGRALSLP--GS---EKKQLLSE----IDSKLEEANELLDQMDLEVRELP-PNFRSSY   70 (220)
T ss_pred             CchHHHHHHHHHHHHHHHHHHhHHHHhcCC--ch---HHHHHHHH----HHHhHHHHHHHHHHHHHHHHhCC-chhhhHH
Confidence            789999999999999999999999999876  22   44454544    44589999999999999999988 5559999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC------chhhhhhhhcchhhhhhhhHHHhHHHHHH
Q 022606           84 QSLLQSWKKECNNLRLSLRNANLQAKANMRKAAQEERELLLGGGE------ESTIRRRNLQTKAGMTSAAESITESLRRT  157 (294)
Q Consensus        84 ~~rV~~~k~dL~~Lr~~~rkA~l~ak~~~~~~~~~eReeLL~~~~------~~~~r~r~~~~~~~l~~~s~~~T~~L~rt  157 (294)
                      ..++..||++++.++.++++..  + ++...   ..|++++....      ..++|.+.++.++++..+    |++|..+
T Consensus        71 ~~KlR~yksdl~~l~~e~k~~~--~-~~~~~---~~rde~~~~~~add~~~~~dQR~rLl~nTerLeRs----t~rl~ds  140 (220)
T KOG1666|consen   71 LSKLREYKSDLKKLKRELKRTT--S-RNLNA---GDRDELLEALEADDQNISADQRARLLQNTERLERS----TDRLKDS  140 (220)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhh--c-ccccc---chHHHHHhhhhccccccchhHHHHHHhhhHHHHHh----HHHHHHH
Confidence            9999999999999999999976  1 21211   24666665432      224566666777777655    9999999


Q ss_pred             HHHHHHHHHHhHHHHHhHHhhhHHHHHHHHHHhhHHHHHHhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 022606          158 RQLMVQEVERNASTLMTFDESTGVLRKAESEYKGHRSLLMRTRNLLSTMQRQDIIDRVILVLGLILFSCAVLYVVSKRI  236 (294)
Q Consensus       158 ~~~m~~~le~g~~~L~~L~~q~~tL~~t~~~~~~~~~~L~~S~~ll~~i~RR~~~Dk~il~~~~~~fl~~i~~Ii~rRl  236 (294)
                      ++.+.++.+.|+.+|++|+.|+++|.+++++++++++.||+|+++|++|.||..++||++++.++++++.+++|+|..|
T Consensus       141 ~Ria~ETEqIG~~IL~dL~~QRe~L~rar~rL~~td~~lgkS~kiL~tM~RR~~~nk~~~~aii~~l~~~il~ilY~kf  219 (220)
T KOG1666|consen  141 QRIALETEQIGSEILEDLHGQREQLERARERLRETDANLGKSRKILTTMTRRLIRNKFTLTAIIALLVLAILLILYSKF  219 (220)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999876

>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=4.2e-26  Score=201.05  Aligned_cols=206  Identities=17%  Similarity=0.227  Sum_probs=165.8

Q ss_pred             HHHHHHHHHHHHHHhh-CcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHhHHHHHHHHHHHHHHHH
Q 022606           17 EAYAKTQAHIKAIENY-GKSREEKEKSSNSLQRLNGLAQDGLNLLNSLHLKLDLLAPQLPTSDQVQSAQSLLQSWKKECN   95 (294)
Q Consensus        17 ~l~~~~~~~i~~l~~~-~~~~~~~~~~~~~l~~L~~~I~~~l~~l~~~ie~ldl~a~~~~~~~~r~~~~~rV~~~k~dL~   95 (294)
                      .+|+.|++.+..++.. ...+..  ....+...+...|+..|..+.+.|++|+..+.++|| ..|+++..+++++++|..
T Consensus         3 ~ly~~t~~~~~k~q~~l~rlE~~--~~~~e~~~v~~~i~~sI~~~~s~~~rl~~~~~~epp-~~rq~~rlr~dQl~~d~~   79 (213)
T KOG3251|consen    3 ALYQSTNRQLDKLQRGLIRLERT--IKTQEVSAVENSIQRSIDQYASRCQRLDVLVSKEPP-KSRQAARLRVDQLLEDVE   79 (213)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHcc--ccccchHHHHHHHHHhHHHHHHHHHHHHhHhhcCCC-CcHHHHHHHHHHHHHHHH
Confidence            4666677666666652 332221  122567788889999999999999999999999885 458888888999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhhhhhcchhhhhhhhHHHhHHHHHHHHHHHHHHHHhHHHHHhH
Q 022606           96 NLRLSLRNANLQAKANMRKAAQEERELLLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERNASTLMTF  175 (294)
Q Consensus        96 ~Lr~~~rkA~l~ak~~~~~~~~~eReeLL~~~~~~~~r~r~~~~~~~l~~~s~~~T~~L~rt~~~m~~~le~g~~~L~~L  175 (294)
                      +++.+++++.  .+++.++.+..+|++||.+++..     +...+....+...+..++|.+++++|++.+++|..++++|
T Consensus        80 ~l~~~l~~~~--~R~~~r~~~~~er~~lL~~~~~~-----~~~~~~~~~D~el~~~d~l~~s~~~lDd~l~~G~~ile~l  152 (213)
T KOG3251|consen   80 HLQTSLRTSM--NRNNRREQQARERVELLDRRFTN-----GATGTSIPFDEELQENDSLKRSHNMLDDLLESGSAILENL  152 (213)
T ss_pred             HHHHHHHHHH--HHhHHHHHHHHHHHHHhcCCCCC-----CCccCCCcchHHHHhhhHHHHHHhhHHHHHHHHHHHHHHH
Confidence            9999999977  44556666667899999887642     1111112245556779999999999999999999999999


Q ss_pred             HhhhHHHHHHHHHHhhHHHHHHhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 022606          176 DESTGVLRKAESEYKGHRSLLMRTRNLLSTMQRQDIIDRVILVLGLILFSCAVLYVVS  233 (294)
Q Consensus       176 ~~q~~tL~~t~~~~~~~~~~L~~S~~ll~~i~RR~~~Dk~il~~~~~~fl~~i~~Ii~  233 (294)
                      .+|+-+|+++++++++..++||.|+.+|+.|+||.++||||||+|+++ +++++|.+|
T Consensus       153 ~~Q~~~L~~~~~ki~~~~ntLGlSn~ti~lIeRR~~~Dk~iF~~G~i~-~~v~~yl~~  209 (213)
T KOG3251|consen  153 VEQRLTLKGTQKKILDILNTLGLSNQTIRLIERRVREDKIIFYGGVIL-TLVIMYLFY  209 (213)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhHHHHHHHHHH-HHHHHHHHH
Confidence            999999999999999999999999999999999999999999999655 455555544

>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway

Probab=99.91  E-value=3.9e-24  Score=167.87  Aligned_cols=91  Identities=45%  Similarity=0.773  Sum_probs=89.3

Q ss_pred             hhHHHhHHHHHHHHHHHHHHHHhHHHHHhHHhhhHHHHHHHHHHhhHHHHHHhHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 022606          146 AAESITESLRRTRQLMVQEVERNASTLMTFDESTGVLRKAESEYKGHRSLLMRTRNLLSTMQRQDIIDRVILVLGLILFS  225 (294)
Q Consensus       146 ~s~~~T~~L~rt~~~m~~~le~g~~~L~~L~~q~~tL~~t~~~~~~~~~~L~~S~~ll~~i~RR~~~Dk~il~~~~~~fl  225 (294)
                      ++.++|++|+|++++|++++++|+.+++.|.+|+++|.+++++|.++++.|+.|+++|+.|+|++++||+|+|+||+||+
T Consensus         2 ~s~~vT~~L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~~~~D~~li~~~~~~f~   81 (92)
T PF03908_consen    2 ASSDVTESLRRTRQMMAQEVERSELTLQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLERRDKTDRILIFFAFLFFL   81 (92)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 022606          226 CAVLYVVSKRI  236 (294)
Q Consensus       226 ~~i~~Ii~rRl  236 (294)
                      +||+||+|||+
T Consensus        82 ~~v~yI~~rRl   92 (92)
T PF03908_consen   82 LVVLYILWRRL   92 (92)
T ss_pred             HHHHHHhhhcC
Confidence            99999999996

>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.27  E-value=1.4e-09  Score=96.67  Aligned_cols=208  Identities=14%  Similarity=0.165  Sum_probs=147.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhCcc---hhhhh--hh---hhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 022606            5 VEAVEKAKKEWDEAYAKTQAHIKAIENYGKS---REEKE--KS---SNSLQRLNGLAQDGLNLLNSLHLKLDLLAPQLPT   76 (294)
Q Consensus         5 ~~~~~~~~~~~~~l~~~~~~~i~~l~~~~~~---~~~~~--~~---~~~l~~L~~~I~~~l~~l~~~ie~ldl~a~~~~~   76 (294)
                      +.-||-.-++=..+=.++.-++.+...++..   |.+++  .-   ......+..+|+.-|+++....+.|.. +...|.
T Consensus         4 ~s~we~LRkqArslE~~ld~kL~syskl~as~~gg~~~~~s~~~~~~~s~ks~~~eie~LLeql~~vndsm~~-~~~s~a   82 (231)
T KOG3208|consen    4 SSSWEALRKQARSLENQLDSKLVSYSKLGASTHGGYDIDTSPLSGSDRSFKSLENEIEGLLEQLQDVNDSMND-CASSPA   82 (231)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccCcCcchhhhHHHHHHHHHHHHHHHHHHHh-hccCCC
Confidence            3345555555555666666666665554321   11000  00   124456677777789999999999987 222232


Q ss_pred             hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhhhhhcchhhh--hhhhHHHhHHH
Q 022606           77 SDQVQSAQSLLQSWKKECNNLRLSLRNANLQAKANMRKAAQEERELLLGGGEESTIRRRNLQTKAGM--TSAAESITESL  154 (294)
Q Consensus        77 ~~~r~~~~~rV~~~k~dL~~Lr~~~rkA~l~ak~~~~~~~~~eReeLL~~~~~~~~r~r~~~~~~~l--~~~s~~~T~~L  154 (294)
                      +  -..+...+..|++=|+.+.++|+++.-    ++.  +.+||+.|++...+..  .+. ..-.+.  ...-...++.|
T Consensus        83 ~--~aa~~htL~RHrEILqdy~qef~rir~----n~~--a~~e~~~Ll~s~~~~~--~~~-~~~~~~~~~e~~lkE~~~i  151 (231)
T KOG3208|consen   83 N--SAAVMHTLQRHREILQDYTQEFRRIRS----NID--AKRERESLLESVRADI--SSY-PSASGFNRGEMYLKEHDHI  151 (231)
T ss_pred             C--cHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH--HHHHHHHHHHHHhhhh--ccC-CccCCCchHHHHHHHhccc
Confidence            2  367788999999999999999999662    343  3457888886532100  000 000000  02234578999


Q ss_pred             HHHHHHHHHHHHHhHHHHHhHHhhhHHHHHHHHHHhhHHHHHHhHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 022606          155 RRTRQLMVQEVERNASTLMTFDESTGVLRKAESEYKGHRSLLMRTRNLLSTMQRQDIIDRVILVLGLILF  224 (294)
Q Consensus       155 ~rt~~~m~~~le~g~~~L~~L~~q~~tL~~t~~~~~~~~~~L~~S~~ll~~i~RR~~~Dk~il~~~~~~f  224 (294)
                      .++.+.+++.+++..++.++|+.|+.+|++++.++.++.+-+-.-+.||.+|.++-..|.+|+.+.+.++
T Consensus       152 n~s~~~vde~Is~A~aTre~l~~Qrs~l~~i~~k~~~~a~r~P~IN~Ll~kIk~kkrrdslILa~Vis~C  221 (231)
T KOG3208|consen  152 NNSIRLVDELISQAQATRENLHSQRSVLGGINNKVNNIANRFPAINQLLQKIKIKKRRDSLILAAVISVC  221 (231)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999998876653

>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C

Probab=98.97  E-value=4.5e-09  Score=77.13  Aligned_cols=63  Identities=21%  Similarity=0.297  Sum_probs=59.8

Q ss_pred             HHHhHHHHHHHHHHHHHHHHhHHHHHhHHhhhHHHHHHHHHHhhHHHHHHhHHHHHHHHHHhh
Q 022606          148 ESITESLRRTRQLMVQEVERNASTLMTFDESTGVLRKAESEYKGHRSLLMRTRNLLSTMQRQD  210 (294)
Q Consensus       148 ~~~T~~L~rt~~~m~~~le~g~~~L~~L~~q~~tL~~t~~~~~~~~~~L~~S~~ll~~i~RR~  210 (294)
                      ...+++|.+++++++++++.|..++.+|..|+++|+++++++.++++.++.|+++|+.|.||.
T Consensus         4 ~~e~~~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~~~l~~I~rR~   66 (66)
T PF12352_consen    4 LRESDSLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSNSLLKRISRRK   66 (66)
T ss_dssp             HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHccC
Confidence            346889999999999999999999999999999999999999999999999999999999983

>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles

Probab=98.69  E-value=2.5e-07  Score=70.07  Aligned_cols=79  Identities=19%  Similarity=0.358  Sum_probs=67.2

Q ss_pred             HHHHHHHHHHHHHHHHhhCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHhHHHHHHHHHHHHHHH
Q 022606           15 WDEAYAKTQAHIKAIENYGKSREEKEKSSNSLQRLNGLAQDGLNLLNSLHLKLDLLAPQLPTSDQVQSAQSLLQSWKKEC   94 (294)
Q Consensus        15 ~~~l~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~l~~~ie~ldl~a~~~~~~~~r~~~~~rV~~~k~dL   94 (294)
                      |+.++.++..+|..+...++  .   +....+..++.    .|+++..+|++|+++++..| ++.|..+..+|..||.+|
T Consensus         1 f~~l~~~i~~~l~~~~~~~~--~---~r~~~i~~~e~----~l~ea~~~l~qMe~E~~~~p-~s~r~~~~~kl~~yr~~l   70 (79)
T PF05008_consen    1 FQALTAEIKSKLERIKNLSG--E---QRKSLIREIER----DLDEAEELLKQMELEVRSLP-PSERNQYKSKLRSYRSEL   70 (79)
T ss_dssp             HHHHHHHHHHHHHHGGGS-C--H---HHHHHHHHHHH----HHHHHHHHHHHHHHHHCTS--HHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhhccCh--H---HHHHHHHHHHH----HHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHH
Confidence            78899999999999997652  2   45566666655    79999999999999999985 788999999999999999


Q ss_pred             HHHHHHHHH
Q 022606           95 NNLRLSLRN  103 (294)
Q Consensus        95 ~~Lr~~~rk  103 (294)
                      ..++..|++
T Consensus        71 ~~lk~~l~~   79 (79)
T PF05008_consen   71 KKLKKELKK   79 (79)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHhcC
Confidence            999999875

The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.

>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.10  E-value=0.25  Score=46.31  Aligned_cols=179  Identities=11%  Similarity=0.112  Sum_probs=114.0

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChH--h-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022606           43 SNSLQRLNGLAQDGLNLLNSLHLKLDLLAPQLPTSD--Q-VQSAQSLLQSWKKECNNLRLSLRNANLQAKANMRKAAQEE  119 (294)
Q Consensus        43 ~~~l~~L~~~I~~~l~~l~~~ie~ldl~a~~~~~~~--~-r~~~~~rV~~~k~dL~~Lr~~~rkA~l~ak~~~~~~~~~e  119 (294)
                      .-++++|--.|+.+|..++..|-++..+..-...-+  + ..-.+..|..++..|.+.-.+|+-..-  -|...-.+...
T Consensus        78 ~VeI~eLT~iikqdi~sln~~i~~Lqei~~~~gn~s~~~~~~Hs~~vV~~Lqs~la~is~~fk~VLE--~Rtenmka~k~  155 (311)
T KOG0812|consen   78 PVEIQELTFIIKQDITSLNSQIAQLQEIVKANGNLSNKQLVQHSKNVVVSLQSKLANISKDFKDVLE--IRTENMKAVKN  155 (311)
T ss_pred             chhhHHHHHHHhcchHHHHHHHHHHHHHHHHhccccchHhhhhhHHHHHHHHHHHHhhhhhHHHHHH--HHHHHHHHHhh
Confidence            347889999999999999999988876663322222  1 345778899999999999988887552  23333334456


Q ss_pred             HHhhcCCCC---ch-hhhhh------------------------hh----cc---hhhhhhhh-HHHhH---HHHHHHHH
Q 022606          120 RELLLGGGE---ES-TIRRR------------------------NL----QT---KAGMTSAA-ESITE---SLRRTRQL  160 (294)
Q Consensus       120 ReeLL~~~~---~~-~~r~r------------------------~~----~~---~~~l~~~s-~~~T~---~L~rt~~~  160 (294)
                      |-+.|+.+.   .. +++.+                        +.    .+   ...+++.+ .-+++   .+++..-.
T Consensus       156 R~dkfs~~~a~~~a~p~~n~~a~~~~~~~l~~~~~~~sq~~~~ln~gd~~~~qqqQm~ll~es~~Y~Q~R~~~~q~IEst  235 (311)
T KOG0812|consen  156 RRDKFSASYASLNANPVSNSAARLHPLKLLVDPKDEASQDVESLNMGDSSNPQQQQMALLDESDEYVQERAKTMQNIEST  235 (311)
T ss_pred             HHHHhccccCCCCCcccCcccccCCchhhhcCchhhcccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777776531   00 11110                        00    00   00122222 11222   22222222


Q ss_pred             HHHHHHHhHHHHHhHHhhhHHHHHHHHHHhhHHHHHHhHHHHHHHHHHhhhhhHHHHHHHHHH
Q 022606          161 MVQEVERNASTLMTFDESTGVLRKAESEYKGHRSLLMRTRNLLSTMQRQDIIDRVILVLGLIL  223 (294)
Q Consensus       161 m~~~le~g~~~L~~L~~q~~tL~~t~~~~~~~~~~L~~S~~ll~~i~RR~~~Dk~il~~~~~~  223 (294)
                      +.+.=..-+.......+|.+++++..+-+.+.+-.+..+...|-++--|...+||+++=.|+|
T Consensus       236 IsElG~IF~QLA~mVseQ~E~i~RID~nv~ds~lnI~gA~~ellKy~e~vSSNRwLmvkiF~i  298 (311)
T KOG0812|consen  236 ISELGGIFQQLASMVSEQEETIQRIDDNVDDSDLNIEGAHSELLKYFERVSSNRWLMVKIFGI  298 (311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence            222222334555566899999999999999999999999999999999999999998765544

>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport

Probab=97.02  E-value=0.17  Score=46.45  Aligned_cols=75  Identities=15%  Similarity=0.115  Sum_probs=49.3

Q ss_pred             hhhhHHHhHHHHHHHHHHHHHHH-HhHHHHHhHHhhhHHHHHHHHHHhhHHHHHHhHHHHHHHHHHhhhhhHHHHHHH
Q 022606          144 TSAAESITESLRRTRQLMVQEVE-RNASTLMTFDESTGVLRKAESEYKGHRSLLMRTRNLLSTMQRQDIIDRVILVLG  220 (294)
Q Consensus       144 ~~~s~~~T~~L~rt~~~m~~~le-~g~~~L~~L~~q~~tL~~t~~~~~~~~~~L~~S~~ll~~i~RR~~~Dk~il~~~  220 (294)
                      +++.....+.|..---.|+..+- .+...-+.|.+...+|..+...+..--+.|+....=++.+.+....  |++|+.
T Consensus       158 l~~~~~~QE~L~~em~~La~~LK~~s~~~~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~~~~~~~--~~~~~~  233 (251)
T PF09753_consen  158 LQHHRNLQEDLTEEMLSLARQLKENSLAFSQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEHSSKSWG--CWTWLM  233 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--HHHHHH
Confidence            33444445555555555555555 4445566788888999999888887777777777777777666655  555554

They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].

>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.54  E-value=0.014  Score=47.46  Aligned_cols=66  Identities=15%  Similarity=0.216  Sum_probs=52.3

Q ss_pred             HhHHHHHhHHhhhHHHHHHHHHHhhHHHHHHhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 022606          167 RNASTLMTFDESTGVLRKAESEYKGHRSLLMRTRNLLSTMQRQDIIDRVILVLGLILFSCAVLYVVSKR  235 (294)
Q Consensus       167 ~g~~~L~~L~~q~~tL~~t~~~~~~~~~~L~~S~~ll~~i~RR~~~Dk~il~~~~~~fl~~i~~Ii~rR  235 (294)
                      .+-.+..+...|...|.+..+.+.+..+.|+.+-.=++.|.|+   +.+-++..+++|++|+++|+|.+
T Consensus        51 Ls~dIg~Ev~~qnklld~mdddfdsts~~L~gtm~r~~~~ar~---sg~~l~~~m~~f~lV~~fi~~~~  116 (118)
T KOG3385|consen   51 LSLDIGDEVRTQNKLLDGMDDDFDSTSGFLSGTMGRLKTMARR---SGISLLCWMAVFSLVAFFILWVW  116 (118)
T ss_pred             HHHHhccccchHHHHHHHhccchhhhHHHHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHhhee
Confidence            4556667788999999999999999999999999989999888   55555555666666777776654

>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.52  E-value=0.64  Score=42.63  Aligned_cols=183  Identities=13%  Similarity=0.125  Sum_probs=103.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCh-----HhHHHHHH
Q 022606           11 AKKEWDEAYAKTQAHIKAIENYGKSREEKEKSSNSLQRLNGLAQDGLNLLNSLHLKLDLLAPQLPTS-----DQVQSAQS   85 (294)
Q Consensus        11 ~~~~~~~l~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~l~~~ie~ldl~a~~~~~~-----~~r~~~~~   85 (294)
                      ...+-+.+.+++++.+++-..++..+      .+..+++-..++..|...-.-+++.-..+.+-|..     .+-+.=+.
T Consensus        11 v~~e~~k~~~~~~~~~~r~~~~~~~~------~~~~~~~t~~lr~~i~~~~edl~~~~~il~~~~~~~~ide~El~~R~~   84 (235)
T KOG3202|consen   11 VKNETLKLSEEIQGLYQRRSELLKDT------GSDAEELTSVLRRSIEEDLEDLDELISILERNPSKFGIDEFELSRRRR   84 (235)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhc------cchhHHHHHHHHHHhHHHHHHHHHHHHHHHhCcccccCcHHHHHHHHH
Confidence            33477888888888888888875331      24444555555545555544455444444443321     11222233


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchh----hhhhhhcc--------hhhhhhhhHHHhHH
Q 022606           86 LLQSWKKECNNLRLSLRNANLQAKANMRKAAQEERELLLGGGEEST----IRRRNLQT--------KAGMTSAAESITES  153 (294)
Q Consensus        86 rV~~~k~dL~~Lr~~~rkA~l~ak~~~~~~~~~eReeLL~~~~~~~----~r~r~~~~--------~~~l~~~s~~~T~~  153 (294)
                      .++..+.++...+..|.+-..        +...-|+.|++.+..+.    ..+.....        ...+++   +--+.
T Consensus        85 ~i~~lr~q~~~~~~~~~~~~~--------~~~~~r~~l~~~~~~~~~~~~~~~~~~~D~v~~~~~~qqqm~~---eQDe~  153 (235)
T KOG3202|consen   85 FIDNLRTQLRQMKSKMAMSGF--------ANSNIRDILLGPEKSPNLDEAMSRASGLDNVQEIVQLQQQMLQ---EQDEG  153 (235)
T ss_pred             HHHHHHHHHHHHHHHHHhhcc--------ccccchhhhcCCCCCCchhhhHHHhhccCcHHHHHHHHHHHHH---HHHHH
Confidence            455555555555555544110        00023777876543210    00000000        011221   12233


Q ss_pred             HHHHHHHHHHHHHHhHHHHHhHHhhhHHHHHHHHHHhhHHHHHHhHHHHHHHHHHhh
Q 022606          154 LRRTRQLMVQEVERNASTLMTFDESTGVLRKAESEYKGHRSLLMRTRNLLSTMQRQD  210 (294)
Q Consensus       154 L~rt~~~m~~~le~g~~~L~~L~~q~~tL~~t~~~~~~~~~~L~~S~~ll~~i~RR~  210 (294)
                      |.-.+..+.-.-..|..+-+.|.+|...|-.....+..+.+-|....+-+..+.+..
T Consensus       154 Ld~ls~ti~rlk~~a~~~g~EL~~Q~~llDdl~~e~d~t~srl~~~~~~l~~v~~~~  210 (235)
T KOG3202|consen  154 LDGLSATVQRLKGMALAMGEELEEQGRLLDDLDNEMDRTESRLDRVMKRLAKVNRMA  210 (235)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            444444444555677888899999999999999999999999999999999999933

>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis

Probab=95.68  E-value=0.54  Score=36.10  Aligned_cols=42  Identities=21%  Similarity=0.443  Sum_probs=26.0

Q ss_pred             HhHHHHHHHHHHHHH----HHHhHHHHHhHHhhhHHHHHHHHHHhhH
Q 022606          150 ITESLRRTRQLMVQE----VERNASTLMTFDESTGVLRKAESEYKGH  192 (294)
Q Consensus       150 ~T~~L~rt~~~m~~~----le~g~~~L~~L~~q~~tL~~t~~~~~~~  192 (294)
                      +.+.+..++..|.+.    +++| ..+++|.+.++.|......|...
T Consensus         8 i~~~v~~v~~im~~Ni~~ll~Rg-e~L~~L~~kt~~L~~~a~~F~k~   53 (89)
T PF00957_consen    8 IQEQVEEVKNIMRENIDKLLERG-EKLEELEDKTEELSDNAKQFKKN   53 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcC-chHHHHHHHHHHHHHHhHHHHHH
Confidence            344555555555443    4454 56788888888887777766543

Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....

>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.21  E-value=2.9  Score=39.67  Aligned_cols=82  Identities=9%  Similarity=0.178  Sum_probs=59.5

Q ss_pred             hHHHHHHHHHHHHHHHHhHHHHHhHHhhhHHHHHHHHHHhhHHHHHHhHHHHHH---HHHHhhhhhHHHHHHHHHHHHHH
Q 022606          151 TESLRRTRQLMVQEVERNASTLMTFDESTGVLRKAESEYKGHRSLLMRTRNLLS---TMQRQDIIDRVILVLGLILFSCA  227 (294)
Q Consensus       151 T~~L~rt~~~m~~~le~g~~~L~~L~~q~~tL~~t~~~~~~~~~~L~~S~~ll~---~i~RR~~~Dk~il~~~~~~fl~~  227 (294)
                      ++.+.+-.+.|.+.-+.-........+|.+++.....-..........+..=+.   .+.|++..-|||+++++++++++
T Consensus       205 h~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~~qkkaRK~k~i~ii~~iii~~v  284 (297)
T KOG0810|consen  205 HDEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAVKYQKKARKWKIIIIIILIIIIVV  284 (297)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhceeeeehHHHHHHHH
Confidence            555666666666666666666667788999999999988888888888777777   77777777777777766555444


Q ss_pred             HHHHH
Q 022606          228 VLYVV  232 (294)
Q Consensus       228 i~~Ii  232 (294)
                      +++++
T Consensus       285 ~v~~i  289 (297)
T KOG0810|consen  285 LVVVI  289 (297)
T ss_pred             Hhhhh
Confidence            44433

>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.05  E-value=3.2  Score=39.22  Aligned_cols=203  Identities=10%  Similarity=0.111  Sum_probs=109.9

Q ss_pred             HHHHHHHHHHHHHHHHhh-C-----cchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHhHHHHHHHHH
Q 022606           15 WDEAYAKTQAHIKAIENY-G-----KSREEKEKSSNSLQRLNGLAQDGLNLLNSLHLKLDLLAPQLPTSDQVQSAQSLLQ   88 (294)
Q Consensus        15 ~~~l~~~~~~~i~~l~~~-~-----~~~~~~~~~~~~l~~L~~~I~~~l~~l~~~ie~ldl~a~~~~~~~~r~~~~~rV~   88 (294)
                      -.-....+.++|..+... .     +.+.+. ++......|...|..-|..+.+.|..+.---.. ++|+++-..+.-..
T Consensus        66 v~~~l~rvrrk~~eLgk~~~Khl~PsF~Dk~-ede~~IE~ltq~Itqll~~cqk~iq~~~a~~n~-~~~~e~~~~~n~~~  143 (305)
T KOG0809|consen   66 VDYYLSRVRRKIDELGKAHAKHLRPSFSDKR-EDEHEIEELTQEITQLLQKCQKLIQRLSASLNQ-LSPSERLLRKNAQG  143 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCCccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CChHHHHHHHHHHH
Confidence            344456667777766542 1     222222 456677788888989999999999988766665 45777777778888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhcCC-------CCchhhhhhhhcchhhhh--hhhHH-HhHHHHHH
Q 022606           89 SWKKECNNLRLSLRNANLQAKANMRKAAQEERE-LLLGG-------GEESTIRRRNLQTKAGMT--SAAES-ITESLRRT  157 (294)
Q Consensus        89 ~~k~dL~~Lr~~~rkA~l~ak~~~~~~~~~eRe-eLL~~-------~~~~~~r~r~~~~~~~l~--~~s~~-~T~~L~rt  157 (294)
                      .+-.+|+.+-.+||..+..--+.++..+  ++. .++..       +.+.+.-++..+ .+.++  ..+.. +-++= +-
T Consensus       144 ~la~~LQ~~s~~fR~~Qs~YLK~l~~~e--e~~~~~e~~~~~~~~~~dd~d~~~~~~q-e~ql~~~e~~~~~~~erE-~E  219 (305)
T KOG0809|consen  144 YLALQLQTLSREFRGLQSKYLKRLRNRE--ENSQEYEDSLDNTVDLPDDEDFSDRTFQ-EQQLMLFENNEEVVRERE-KE  219 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhchh--hcccchhhhccccccCcchhhhhhhhHH-HHHHHHHhcchHHHHHHH-HH
Confidence            9999999999999998865444444322  121 11111       001111111000 01111  00000 00110 11


Q ss_pred             HHHHHHHHHHhHHHHHhH----HhhhHHHHHHHHHHhhHHHHHHhHHHHHHHHHHhhhhhHHHHHHHHHH
Q 022606          158 RQLMVQEVERNASTLMTF----DESTGVLRKAESEYKGHRSLLMRTRNLLSTMQRQDIIDRVILVLGLIL  223 (294)
Q Consensus       158 ~~~m~~~le~g~~~L~~L----~~q~~tL~~t~~~~~~~~~~L~~S~~ll~~i~RR~~~Dk~il~~~~~~  223 (294)
                      .+.|.+.+---..++.+|    .+|...+-...--+..+.-.+..+-+=|.+.++-.+..+-..++++++
T Consensus       220 V~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~KAe~yQk~~~k~~~i~~L~  289 (305)
T KOG0809|consen  220 VTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELHKAERYQKRNKKMKVILMLT  289 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHHHHHHHHhcCCceEehHHHH
Confidence            111222221122233332    567777766666666666777777777777777777766555444333

>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis

Probab=94.91  E-value=0.79  Score=35.15  Aligned_cols=81  Identities=9%  Similarity=0.097  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHhHHhhhHHHHHHHHHHhhHHHHHHhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 022606          152 ESLRRTRQLMVQEVERNASTLMTFDESTGVLRKAESEYKGHRSLLMRTRNLLSTMQRQDIIDRVILVLGLILFSCAVLYV  231 (294)
Q Consensus       152 ~~L~rt~~~m~~~le~g~~~L~~L~~q~~tL~~t~~~~~~~~~~L~~S~~ll~~i~RR~~~Dk~il~~~~~~fl~~i~~I  231 (294)
                      +.+......+++.-+.-..+++.+-+..+.|..+.++=..+...-..=++--+.+.|+.+-.++-+++.+++++++++|+
T Consensus         3 dkl~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~~~~~~k~~~i~~~iv~~~~~~   82 (89)
T PF00957_consen    3 DKLEQIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRKMWWRNYKLYIIIIIIVIIIILI   82 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhhhH
Confidence            56788888999999999999999999999988887766555555444444445555555555555554444444444444


Q ss_pred             H
Q 022606          232 V  232 (294)
Q Consensus       232 i  232 (294)
                      +
T Consensus        83 i   83 (89)
T PF00957_consen   83 I   83 (89)
T ss_dssp             H
T ss_pred             H
Confidence            3

Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....

>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.65  E-value=5.5  Score=32.64  Aligned_cols=71  Identities=18%  Similarity=0.262  Sum_probs=41.1

Q ss_pred             hHHHHHHHHHHHHHHHHhHHHH----------HhHHhhhHHHHHHHHHHhhHHHHHHhHHHHHHHHHHhhhhhHHHHHHH
Q 022606          151 TESLRRTRQLMVQEVERNASTL----------MTFDESTGVLRKAESEYKGHRSLLMRTRNLLSTMQRQDIIDRVILVLG  220 (294)
Q Consensus       151 T~~L~rt~~~m~~~le~g~~~L----------~~L~~q~~tL~~t~~~~~~~~~~L~~S~~ll~~i~RR~~~Dk~il~~~  220 (294)
                      +..++++.+.+++.++.-..+.          +.|.+-++.|....+.|.      ..+.++=+.|=.....-++++.+.
T Consensus        28 ~~k~~~tq~QvdeVv~IMr~NV~KVlER~ekL~~L~drad~L~~~as~F~------~~A~klkrk~wWkn~Km~~il~~v  101 (116)
T KOG0860|consen   28 NDKLQQTQAQVDEVVDIMRENVEKVLERGEKLDELDDRADQLQAGASQFE------KTAVKLKRKMWWKNCKMRIILGLV  101 (116)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5566666666666665555444          444544555544444443      345666677777777777666666


Q ss_pred             HHHHHHH
Q 022606          221 LILFSCA  227 (294)
Q Consensus       221 ~~~fl~~  227 (294)
                      +++++++
T Consensus       102 ~~i~l~i  108 (116)
T KOG0860|consen  102 IIILLVV  108 (116)
T ss_pred             HHHHHHH
Confidence            5554433

>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]

Probab=90.50  E-value=20  Score=35.69  Aligned_cols=83  Identities=20%  Similarity=0.259  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhhhhhcchhhhhhhhHHHhHHHHHHHHH
Q 022606           81 QSAQSLLQSWKKECNNLRLSLRNANLQAKANMRKAAQEERELLLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQL  160 (294)
Q Consensus        81 ~~~~~rV~~~k~dL~~Lr~~~rkA~l~ak~~~~~~~~~eReeLL~~~~~~~~r~r~~~~~~~l~~~s~~~T~~L~rt~~~  160 (294)
                      ...+.-++.++.+..+||+.++.|+......+-+-.+++                            .++-+.+.|-.+.
T Consensus       249 ~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee----------------------------~~~reen~rlQrk  300 (552)
T KOG2129|consen  249 AAEKLHIDKLQAEVERLRTYLSRAQKSYQEKLMQYRAEE----------------------------VDHREENERLQRK  300 (552)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------hhHHHHHHHHHHH
Confidence            345566778899999999999999876422221110000                            1223334444556


Q ss_pred             HHHHHHHhHHHHHhHHhhhHHHHHHHHHHhh
Q 022606          161 MVQEVERNASTLMTFDESTGVLRKAESEYKG  191 (294)
Q Consensus       161 m~~~le~g~~~L~~L~~q~~tL~~t~~~~~~  191 (294)
                      +..++++-++.-..|.++...|.--..+|.+
T Consensus       301 L~~e~erRealcr~lsEsesslemdeery~N  331 (552)
T KOG2129|consen  301 LINELERREALCRMLSESESSLEMDEERYLN  331 (552)
T ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence            7778888777777788877777766666654

>PRK10884 SH3 domain-containing protein; Provisional

Probab=89.60  E-value=8  Score=34.76  Aligned_cols=31  Identities=19%  Similarity=0.008  Sum_probs=16.1

Q ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 022606          202 LLSTMQRQDIIDRVILVLGLILFSCAVLYVVS  233 (294)
Q Consensus       202 ll~~i~RR~~~Dk~il~~~~~~fl~~i~~Ii~  233 (294)
                      -+..+.+.. .-+|+++||.++|+.+++=+|.
T Consensus       161 ~~~~~~~~~-~~~wf~~Gg~v~~~GlllGlil  191 (206)
T PRK10884        161 QLDDKQRTI-IMQWFMYGGGVAGIGLLLGLLL  191 (206)
T ss_pred             HHHHHHHHH-HHHHHHHchHHHHHHHHHHHHh
Confidence            334444433 3456666666666555544443

>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]

Probab=87.31  E-value=24  Score=32.53  Aligned_cols=88  Identities=8%  Similarity=0.052  Sum_probs=67.0

Q ss_pred             hHHHHHHHHHHHHHHHHhHHHHHhHHhhhHHHHHHHHHHhhHHHHHH----hHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 022606          151 TESLRRTRQLMVQEVERNASTLMTFDESTGVLRKAESEYKGHRSLLM----RTRNLLSTMQRQDIIDRVILVLGLILFSC  226 (294)
Q Consensus       151 T~~L~rt~~~m~~~le~g~~~L~~L~~q~~tL~~t~~~~~~~~~~L~----~S~~ll~~i~RR~~~Dk~il~~~~~~fl~  226 (294)
                      ..-|.+...+|++..+.-..+-+...+|.+......+.+-+.....+    -..+-++. -|.+...||+.|+..++.++
T Consensus       184 h~~ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~n~~~g~~h~d~Avks-aRaaRkkki~c~gI~~iii~  262 (280)
T COG5074         184 HQEIKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQENVEQGVGHTDKAVKS-ARAARKKKIRCYGICFIIII  262 (280)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHhhHHHhhhhHHHHHHH-HHHHHhcceehhhhHHHHHH
Confidence            45567778888888888888888889999988888877766554443    33455555 78888899999988888788


Q ss_pred             HHHHHHHHHHhhh
Q 022606          227 AVLYVVSKRIGLL  239 (294)
Q Consensus       227 ~i~~Ii~rRl~~~  239 (294)
                      +|+|++|+-++++
T Consensus       263 viv~vv~~v~~~v  275 (280)
T COG5074         263 VIVVVVFKVVPFV  275 (280)
T ss_pred             HHHHHHhcccchh
Confidence            8888887766554

>KOG2678 consensus Predicted membrane protein [Function unknown]

Probab=85.87  E-value=28  Score=31.83  Aligned_cols=96  Identities=14%  Similarity=0.160  Sum_probs=62.9

Q ss_pred             hhhhhhHHHhHHHHHHHHHHHHHHHHhHHHHH-hHHhhhHHHHHHHHHHhhHHHHHHhHHHHHHHHHHhhhhhHHHHHHH
Q 022606          142 GMTSAAESITESLRRTRQLMVQEVERNASTLM-TFDESTGVLRKAESEYKGHRSLLMRTRNLLSTMQRQDIIDRVILVLG  220 (294)
Q Consensus       142 ~l~~~s~~~T~~L~rt~~~m~~~le~g~~~L~-~L~~q~~tL~~t~~~~~~~~~~L~~S~~ll~~i~RR~~~Dk~il~~~  220 (294)
                      ..+.....+.+-|..+--.|+..+-.+..+.+ .|.+-++++..+-..+..-..-|+.-+.=+....+.-..+++++...
T Consensus       144 q~l~~q~~lQeeLaesll~LArslKtnalAfqsalkeDnQvl~~~~k~~D~N~~~L~~~Serve~y~ksk~s~wf~~~mi  223 (244)
T KOG2678|consen  144 QQLEDQDTLQEELAESLLKLARSLKTNALAFQSALKEDNQVLGAAEKGIDVNSQGLMDVSERVEKYDKSKLSYWFYITMI  223 (244)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHhhhhHHHHHHHH
Confidence            33333344566666777777777776655544 57888888888877777666667666666777777766666666666


Q ss_pred             HHHHHHHHHHHHHHHHh
Q 022606          221 LILFSCAVLYVVSKRIG  237 (294)
Q Consensus       221 ~~~fl~~i~~Ii~rRl~  237 (294)
                      |++|+.+|..|++.+|+
T Consensus       224 I~v~~sFVsMiliiqif  240 (244)
T KOG2678|consen  224 IFVILSFVSMILIIQIF  240 (244)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            66665566666666654

>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.87  E-value=27  Score=31.67  Aligned_cols=18  Identities=22%  Similarity=0.219  Sum_probs=9.3

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 022606           81 QSAQSLLQSWKKECNNLR   98 (294)
Q Consensus        81 ~~~~~rV~~~k~dL~~Lr   98 (294)
                      +.++.-+.+++.+++...
T Consensus        75 R~yksdl~~l~~e~k~~~   92 (220)
T KOG1666|consen   75 REYKSDLKKLKRELKRTT   92 (220)
T ss_pred             HHHHHHHHHHHHHHHHhh
Confidence            445555555555555544

>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls

Probab=84.88  E-value=0.58  Score=38.67  Aligned_cols=14  Identities=21%  Similarity=0.131  Sum_probs=7.0

Q ss_pred             HHHHHHHHHHHHHH
Q 022606          214 RVILVLGLILFSCA  227 (294)
Q Consensus       214 k~il~~~~~~fl~~  227 (294)
                      ||+||++|++++++
T Consensus         1 RW~l~~iii~~i~l   14 (130)
T PF12273_consen    1 RWVLFAIIIVAILL   14 (130)
T ss_pred             CeeeHHHHHHHHHH
Confidence            45566554444333

Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].

>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.94  E-value=42  Score=31.50  Aligned_cols=62  Identities=11%  Similarity=0.072  Sum_probs=38.5

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022606           41 KSSNSLQRLNGLAQDGLNLLNSLHLKLDLLAPQLPTSDQVQSAQSLLQSWKKECNNLRLSLRNANL  106 (294)
Q Consensus        41 ~~~~~l~~L~~~I~~~l~~l~~~ie~ldl~a~~~~~~~~r~~~~~rV~~~k~dL~~Lr~~~rkA~l  106 (294)
                      +.+.++......+.+.+.....++.+++.....    .+-+..+...+.++.++..--+.|.+.+.
T Consensus        55 ~lr~kl~~~~~~~~~~vkdt~~~lke~~~~~~~----~~~~~~k~~~~kL~~ef~~~l~efq~vQr  116 (269)
T KOG0811|consen   55 ELRDKLHQERLNANQLVKDTSALLKEIDTLRLE----SDLRQLKIQLDKLVDEFSAALKEFQKVQR  116 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch----hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445667777777777888888888888877772    11233344445555555555555555443

>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA)

Probab=81.70  E-value=45  Score=31.08  Aligned_cols=48  Identities=21%  Similarity=0.016  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 022606           52 LAQDGLNLLNSLHLKLDLLAPQLPTSDQVQSAQSLLQSWKKECNNLRLSLRN  103 (294)
Q Consensus        52 ~I~~~l~~l~~~ie~ldl~a~~~~~~~~r~~~~~rV~~~k~dL~~Lr~~~rk  103 (294)
                      ..-..++.+...+++++..+.+.+.    .....++-.++.++..++..+.-
T Consensus       146 ~~~~~l~~l~~~~~~le~~l~~~~~----~~~l~~l~~l~~~l~~l~~~l~~  193 (318)
T TIGR00383       146 SYFPLLENIEDELEELEDEIISGPT----STLMDEILSLRTELLALRRSLWP  193 (318)
T ss_pred             ccHHHHHHHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334566777777777766655332    24455677777777766655543

The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.

>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=81.68  E-value=21  Score=34.06  Aligned_cols=86  Identities=12%  Similarity=0.111  Sum_probs=65.1

Q ss_pred             HHHhHHHHHHHHHHHHHHHHhHHHHHhHHhhhHHHHHHHHHHhhHHHHHHhHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 022606          148 ESITESLRRTRQLMVQEVERNASTLMTFDESTGVLRKAESEYKGHRSLLMRTRNLLSTMQRQDIIDRVILVLGLILFSCA  227 (294)
Q Consensus       148 ~~~T~~L~rt~~~m~~~le~g~~~L~~L~~q~~tL~~t~~~~~~~~~~L~~S~~ll~~i~RR~~~Dk~il~~~~~~fl~~  227 (294)
                      .+.-+..+.+.+.|.+....-.-..+-+..|.+.+...++--.+.+-.+..++.=|+...+..-.-+.++.++++++-++
T Consensus       228 n~~~devrqie~~lvEI~~Lq~ifsehvl~Q~~~Id~I~d~~~~~teNIk~gNe~irka~~~~~~~r~~~lf~llvlsf~  307 (316)
T KOG3894|consen  228 NELLDEVRQIEKRLVEISALQDIFSEHVLQQDQNIDLIHDLQSGATENIKDGNEEIRKAKRNNGGLRVFLLFFLLVLSFS  307 (316)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHhcccchhHHHHHHHHHHHH
Confidence            34455566667777776666666677788999999999999999999999999999999888877777766665555555


Q ss_pred             HHHHHH
Q 022606          228 VLYVVS  233 (294)
Q Consensus       228 i~~Ii~  233 (294)
                      .+|+-|
T Consensus       308 lLFldw  313 (316)
T KOG3894|consen  308 LLFLDW  313 (316)
T ss_pred             HHHHhh
Confidence            555443

>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown

Probab=80.49  E-value=5.3  Score=28.84  Aligned_cols=34  Identities=18%  Similarity=0.174  Sum_probs=23.8

Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 022606          200 RNLLSTMQRQDIIDRVILVLGLILFSCAVLYVVS  233 (294)
Q Consensus       200 ~~ll~~i~RR~~~Dk~il~~~~~~fl~~i~~Ii~  233 (294)
                      +.....-.|+.+.-++++++.+++|+++.+|+.|
T Consensus        25 ~~~~~k~qk~~~~~~~i~~~~~i~~l~v~~~~~~   58 (59)
T PF09889_consen   25 REEYRKRQKRMRKTQYIFFGIFILFLAVWIFMTF   58 (59)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4455566677777888888888777666666543

They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	294
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.8 bits (92), Expect = 9e-04
 Identities = 30/217 (13%), Positives = 68/217 (31%), Gaps = 58/217 (26%)

Query: 32  YGKSREEKEKSSNSLQRLNGLAQDGLNLLNSLH-LKLDLLAPQLPTSDQVQSAQSLLQSW 90
           +   + +     N L + + + +       S+  + L+L        ++    +S++  +
Sbjct: 397 FDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKL---ENEYALHRSIVDHY 453

Query: 91  KKECNNLRLSLRNANLQAKAN-----------MRKAAQEERELLLGGGEESTIRR----- 134
                N+  +  + +L                ++     ER  L         R      
Sbjct: 454 -----NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF--------RMVFLDF 500

Query: 135 RNLQTKAGMTSAAESITES-------LRRTRQLMVQ---EVERNASTLMTFDESTGVLRK 184
           R L+ K    S A + + S       L+  +  +     + ER  + ++ F      L K
Sbjct: 501 RFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDF------LPK 554

Query: 185 AE-----SEYKG--HRSLLMRTRNLLSTMQRQDIIDR 214
            E     S+Y      +L+     +     +Q  + R
Sbjct: 555 IEENLICSKYTDLLRIALMAEDEAIFEEAHKQ--VQR 589

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	294
2qyw_A	102	Vesicle transport through interaction with T-SNAR	99.53
1vcs_A	102	Vesicle transport through interaction with T- snar	99.41
3onj_A	97	T-snare VTI1; helix, HABC, protein transport; 1.92	99.37
2nps_C	81	Vesicle transport through interaction with T- snar	99.13
1gl2_C	65	VTI1B, vesicle transport V-snare protein VTI1-like	98.71
1n7s_C	79	SNAP-25A; neuronal snare protein complex, four hel	98.2
1nhl_A	54	Synaptosomal-associated protein 23; snare, coiled-	97.63
3b5n_C	70	Protein transport protein SEC9; snare complex, syn	96.03
1l4a_C	83	S-SNAP25 fusion protein; snare, snare complex, mem	95.66
3hd7_B	109	Syntaxin-1A; membrane protein, coiled-coil, 4-heli	94.23
3hd7_A	91	Vesicle-associated membrane protein 2; membrane pr	94.18
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	84.46

>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V

Probab=99.53  E-value=9e-14  Score=110.08  Aligned_cols=91  Identities=13%  Similarity=0.114  Sum_probs=78.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHhHHH
Q 022606            3 EVVEAVEKAKKEWDEAYAKTQAHIKAIENYGKSREEKEKSSNSLQRLNGLAQDGLNLLNSLHLKLDLLAPQLPTSDQVQS   82 (294)
Q Consensus         3 ~~~~~~~~~~~~~~~l~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~l~~~ie~ldl~a~~~~~~~~r~~   82 (294)
                      +|+++|++||.+|+.++.+++++|.+|..+.. ++   +++..+.+++.    .|+++..+|++|+++++.+| ++.|..
T Consensus        12 ~mSelFe~YE~df~~l~~~i~~kl~~i~~~~~-~e---~rk~~i~~ie~----~ldEA~eLl~qMelE~r~~p-~s~R~~   82 (102)
T 2qyw_A           12 ASSEHFEKLHEIFRGLLEDLQGVPERLLGTAG-TE---EKKKLVRDFDE----KQQEANETLAEMEEELRYAP-LTFRNP   82 (102)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC-SH---HHHHHHHHHHH----HHHHHHHHHHHHHHHHHTSC-HHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC-cH---HHHHHHHHHHH----HHHHHHHHHHHHHHHHHhCC-HHHHHH
Confidence            58999999999999999999999999987632 22   45555555555    79999999999999999987 888999


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 022606           83 AQSLLQSWKKECNNLRLSLR  102 (294)
Q Consensus        83 ~~~rV~~~k~dL~~Lr~~~r  102 (294)
                      +..||+.||.+|.+|+.+|+
T Consensus        83 ~~~klr~Yk~dL~~lk~elk  102 (102)
T 2qyw_A           83 MMSKLRNYRKDLAKLHREVR  102 (102)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHhhcC
Confidence            99999999999999998874

>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1

Probab=99.41  E-value=2e-13  Score=108.06  Aligned_cols=93  Identities=13%  Similarity=0.216  Sum_probs=80.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHhHHHH
Q 022606            4 VVEAVEKAKKEWDEAYAKTQAHIKAIENYGKSREEKEKSSNSLQRLNGLAQDGLNLLNSLHLKLDLLAPQLPTSDQVQSA   83 (294)
Q Consensus         4 ~~~~~~~~~~~~~~l~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~l~~~ie~ldl~a~~~~~~~~r~~~   83 (294)
                      ++++|++||.+|+.++.+++.+|..|..++  |+   +++..+.+++.    .|+++..+|++|+++++.+| ++.|..+
T Consensus         3 sSelFe~YE~df~~l~~~i~~kl~~i~~~~--ge---erk~~i~~ie~----~l~EA~ell~qMelE~r~~p-~~~R~~~   72 (102)
T 1vcs_A            3 SGSSGEGYEQDFAVLTAEITSKIARVPRLP--PD---EKKQMVANVEK----QLEEARELLEQMDLEVREIP-PQSRGMY   72 (102)
T ss_dssp             CCCCCCCSHHHHHHHHHHHHHHHHHGGGSC--TT---THHHHHHHHHH----HHHHHHHHHHHHHHHHTTSC-TTTHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhhccC--cH---HHHHHHHHHHH----HHHHHHHHHHHHHHHHHhCC-HHhHHHH
Confidence            457899999999999999999999998875  22   45555555555    79999999999999999987 7779999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 022606           84 QSLLQSWKKECNNLRLSLRNANL  106 (294)
Q Consensus        84 ~~rV~~~k~dL~~Lr~~~rkA~l  106 (294)
                      ..+|+.||.+|.+|+.+|+++..
T Consensus        73 ~~klr~Yk~dL~~lk~elk~~~~   95 (102)
T 1vcs_A           73 SNRMRSYKQEMGKLETDFKRSRI   95 (102)
T ss_dssp             HHHHHHHHHHHHHHHHHTHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999664

>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C

Probab=99.37  E-value=2.9e-12  Score=100.50  Aligned_cols=91  Identities=11%  Similarity=0.196  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-ChHhHHHHH
Q 022606            6 EAVEKAKKEWDEAYAKTQAHIKAIENYGKSREEKEKSSNSLQRLNGLAQDGLNLLNSLHLKLDLLAPQLP-TSDQVQSAQ   84 (294)
Q Consensus         6 ~~~~~~~~~~~~l~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~l~~~ie~ldl~a~~~~-~~~~r~~~~   84 (294)
                      ++|++||.+|+.++.+++.+|..+++++  |.   +++..+.+++.    .++++..+|++|+++++.+. |++.|..+.
T Consensus         1 ~lF~~YE~df~~~~~~i~~~l~~~~~~~--ge---~Rk~~i~~ie~----~ldEA~ell~qMelE~~~~~~p~~~R~~~~   71 (97)
T 3onj_A            1 SLLISYESDFKTTLEQAKASLAEAPSQP--LS---QRNTTLKHVEQ----QQDELFDLLDQMDVEVNNSIGDASERATYK   71 (97)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHGGGSC--HH---HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHhccC--hH---HHHHHHHHHHH----HHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            4799999999999999999999998765  33   45555555555    79999999999999999982 478899999


Q ss_pred             HHHHHHHHHHHH-HHHHHHHHH
Q 022606           85 SLLQSWKKECNN-LRLSLRNAN  105 (294)
Q Consensus        85 ~rV~~~k~dL~~-Lr~~~rkA~  105 (294)
                      .+|+.||.+|.+ ++..|+++.
T Consensus        72 ~klr~Yk~dl~~~lk~~lk~l~   93 (97)
T 3onj_A           72 AKLREWKKTIQSDIKRPLQSLV   93 (97)
T ss_dssp             HHHHHHHHHHHHHTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999 999999853

>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}

Probab=99.13  E-value=2e-10  Score=87.11  Aligned_cols=78  Identities=17%  Similarity=0.238  Sum_probs=67.3

Q ss_pred             hhhhhcchhhhhhhhHHHhHHHHHHHHHHHHHHHHhHHHHHhHHhhhHHHHHHHHHHhhHHHHHHhHHHHHHHHHHhhhh
Q 022606          133 RRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERNASTLMTFDESTGVLRKAESEYKGHRSLLMRTRNLLSTMQRQDII  212 (294)
Q Consensus       133 r~r~~~~~~~l~~~s~~~T~~L~rt~~~m~~~le~g~~~L~~L~~q~~tL~~t~~~~~~~~~~L~~S~~ll~~i~RR~~~  212 (294)
                      |++.+..++.+-    ..+++|.++++++.++.+.|..++++|..|+++|.+++++++++++.++.|+++|+.|.||..+
T Consensus         4 R~~Ll~~t~~L~----rt~~~L~~s~r~~~ETE~iG~~il~~L~~QRE~l~~~~~~l~~~d~~l~~s~k~l~~M~rr~~~   79 (81)
T 2nps_C            4 RAHLLDNTERLE----RSSRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRETDANLGKSSRILTGMLRRIIQ   79 (81)
T ss_dssp             TTHHHHHHHHHH----HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHh
Confidence            334444445553    3488999999999999999999999999999999999999999999999999999999999988


Q ss_pred             hH
Q 022606          213 DR  214 (294)
Q Consensus       213 Dk  214 (294)
                      +|
T Consensus        80 nK   81 (81)
T 2nps_C           80 NR   81 (81)
T ss_dssp             --
T ss_pred             CC
Confidence            76

>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1

Probab=98.71  E-value=4.8e-08  Score=70.92  Aligned_cols=60  Identities=18%  Similarity=0.333  Sum_probs=55.2

Q ss_pred             HHhHHHHHHHHHHHHHHHHhHHHHHhHHhhhHHHHHHHHHHhhHHHHHHhHHHHHHHHHH
Q 022606          149 SITESLRRTRQLMVQEVERNASTLMTFDESTGVLRKAESEYKGHRSLLMRTRNLLSTMQR  208 (294)
Q Consensus       149 ~~T~~L~rt~~~m~~~le~g~~~L~~L~~q~~tL~~t~~~~~~~~~~L~~S~~ll~~i~R  208 (294)
                      ..+++|.++.+++.++.+.|..++++|..|+++|.++++++.++++.|+.|+++|+.|.|
T Consensus         6 ~t~~~l~~s~ri~~ETE~iG~~~l~~L~~QREql~~t~~~l~~~d~~l~~s~k~L~~m~R   65 (65)
T 1gl2_C            6 RATQSIERSHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILRSMSR   65 (65)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhHHHhHHhHHHHHHHHHHhhcC
Confidence            348999999999999999999999999999999999999999999999999999999875

>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A

Probab=98.20  E-value=9.7e-06  Score=60.90  Aligned_cols=61  Identities=21%  Similarity=0.252  Sum_probs=57.7

Q ss_pred             HHHhHHHHHHHHHHHHHHHHhHHHHHhHHhhhHHHHHHHHHHhhHHHHHHhHHHHHHHHHH
Q 022606          148 ESITESLRRTRQLMVQEVERNASTLMTFDESTGVLRKAESEYKGHRSLLMRTRNLLSTMQR  208 (294)
Q Consensus       148 ~~~T~~L~rt~~~m~~~le~g~~~L~~L~~q~~tL~~t~~~~~~~~~~L~~S~~ll~~i~R  208 (294)
                      ..-+++++++.+++.++.+.|..++.+|..|++.|.+++..+.++++.|..|.++|+.|.+
T Consensus        19 ~~s~~s~~~~l~~a~Ete~~G~~Tl~~L~~Q~Eql~r~~~~ld~i~~~l~~a~k~L~~m~k   79 (79)
T 1n7s_C           19 DESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQDMKEAEKNLKDLGK   79 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHhHHHHHHHHHhhhcC
Confidence            3458999999999999999999999999999999999999999999999999999999974

>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1

Probab=97.63  E-value=0.00015  Score=50.40  Aligned_cols=52  Identities=19%  Similarity=0.268  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHHHHhHHHHHhHHhhhHHHHHHHHHHhhHHHHHHhHHHHHHHH
Q 022606          155 RRTRQLMVQEVERNASTLMTFDESTGVLRKAESEYKGHRSLLMRTRNLLSTM  206 (294)
Q Consensus       155 ~rt~~~m~~~le~g~~~L~~L~~q~~tL~~t~~~~~~~~~~L~~S~~ll~~i  206 (294)
                      +++.+++.+..+.|..++.+|.+|++.|.++++.+.++++.+..|.++|+.|
T Consensus         3 ~~~~~l~~ese~~g~~Tl~~L~~QgEql~r~~~~ld~i~~~l~~a~k~L~~m   54 (54)
T 1nhl_A            3 RRILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDMRETEKTLTEL   54 (54)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHhHHHHHHhHHHHHHHHHhcC
Confidence            5778889999999999999999999999999999999999999999999754

>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1

Probab=96.03  E-value=0.05  Score=39.61  Aligned_cols=58  Identities=12%  Similarity=0.114  Sum_probs=52.8

Q ss_pred             hHHHHHHHHHHHHHHHHhHHHHHhHHhhhHHHHHHHHHHhhHHHHHHhHHHHHHHHHH
Q 022606          151 TESLRRTRQLMVQEVERNASTLMTFDESTGVLRKAESEYKGHRSLLMRTRNLLSTMQR  208 (294)
Q Consensus       151 T~~L~rt~~~m~~~le~g~~~L~~L~~q~~tL~~t~~~~~~~~~~L~~S~~ll~~i~R  208 (294)
                      .++-+++-+++.+..+.|..++..|..|++.|.+++..+..++..+..+-+.++.|..
T Consensus        11 l~STrr~L~~a~e~e~~g~~Tl~~L~~QgEqL~rtE~~ld~i~~~~k~aek~l~~Lk~   68 (70)
T 3b5n_C           11 VASTRNTLKMAQDAERAGMNTLGMLGHQSEQLNNVEGNLDLMKVQNKVADEKVAELKK   68 (70)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            4555777888889999999999999999999999999999999999999999998864

>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1

Probab=95.66  E-value=0.014  Score=43.92  Aligned_cols=59  Identities=22%  Similarity=0.215  Sum_probs=52.2

Q ss_pred             HHhHHHHHHHHHHHHHHHHhHHHHHhHHhhhHHHHHHHHHHhhHHHHHHhHHHHHHHHH
Q 022606          149 SITESLRRTRQLMVQEVERNASTLMTFDESTGVLRKAESEYKGHRSLLMRTRNLLSTMQ  207 (294)
Q Consensus       149 ~~T~~L~rt~~~m~~~le~g~~~L~~L~~q~~tL~~t~~~~~~~~~~L~~S~~ll~~i~  207 (294)
                      .-+++-+|+.+++.+..+.|..++..|..|.+.|.+++..+..++..+..+-+.|+.|+
T Consensus        24 esl~STrr~l~l~~es~~~g~~Tl~~L~~QgEQL~rie~~ld~I~~dl~~Aek~L~~L~   82 (83)
T 1l4a_C           24 DSLESTRRMLNMCEESKEAGIRTLVMLDEQGEQLDRIEEGLDQINQDMKDAEKNLEGME   82 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGCTTC--
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            34677788888999999999999999999999999999999999999999988887765

>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B

Probab=94.23  E-value=1.5  Score=34.13  Aligned_cols=73  Identities=5%  Similarity=0.098  Sum_probs=48.6

Q ss_pred             hHHHHHHHHHHHHHHHHhHHHHHhHHhhhHHHHHHHHHHhhHHHHHHhHHHHHHH---HHHhhhhhHHHHHHHHHH
Q 022606          151 TESLRRTRQLMVQEVERNASTLMTFDESTGVLRKAESEYKGHRSLLMRTRNLLST---MQRQDIIDRVILVLGLIL  223 (294)
Q Consensus       151 T~~L~rt~~~m~~~le~g~~~L~~L~~q~~tL~~t~~~~~~~~~~L~~S~~ll~~---i~RR~~~Dk~il~~~~~~  223 (294)
                      .+.+++..+.|.+.-+.-........+|.+.+.....-.......+..+.+=+.+   +.|+...-+||+++++++
T Consensus        20 ~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~~rkk~~i~l~~~~i   95 (109)
T 3hd7_B           20 HSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKIMIIICCVI   95 (109)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcceehHHHHHH
Confidence            4445555555555555555666667889999999999999988888888877744   455555555555444333

>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A

Probab=94.18  E-value=1.3  Score=33.52  Aligned_cols=55  Identities=16%  Similarity=0.309  Sum_probs=34.0

Q ss_pred             HhHHHHHHHHHHHHHH----HHhHHHHHhHHhhhHHHHHHHHHHhhHHHHHHhHHHHHHHHHHhhh
Q 022606          150 ITESLRRTRQLMVQEV----ERNASTLMTFDESTGVLRKAESEYKGHRSLLMRTRNLLSTMQRQDI  211 (294)
Q Consensus       150 ~T~~L~rt~~~m~~~l----e~g~~~L~~L~~q~~tL~~t~~~~~~~~~~L~~S~~ll~~i~RR~~  211 (294)
                      +...+..+...|.+.+    ++| .-|+.|.+.++.|......|..      .|+++=+.|-.+..
T Consensus        10 vq~ev~evk~iM~~NI~kvL~Rg-ekL~~L~~kt~~L~~~s~~F~~------~A~~l~rkmwwkn~   68 (91)
T 3hd7_A           10 TQAQVDEVVDIMRVNVDKVLERD-QKLSELDDRADALQAGASQFET------SAAKLKRKYWWKNL   68 (91)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcc-chHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH
Confidence            4555666666664444    455 5678888888888877766654      34445455555555

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=84.46  E-value=18  Score=30.86  Aligned_cols=147  Identities=16%  Similarity=0.109  Sum_probs=74.5

Q ss_pred             HHHHHHHHHHHHHHHHh-hCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHhHHHHHHHHHHHHHH
Q 022606           15 WDEAYAKTQAHIKAIEN-YGKSREEKEKSSNSLQRLNGLAQDGLNLLNSLHLKLDLLAPQLPTSDQVQSAQSLLQSWKKE   93 (294)
Q Consensus        15 ~~~l~~~~~~~i~~l~~-~~~~~~~~~~~~~~l~~L~~~I~~~l~~l~~~ie~ldl~a~~~~~~~~r~~~~~rV~~~k~d   93 (294)
                      |.+.+.+.+..+..++. |.       +...+..+|+......|..+...+.++..-+..         +...++.||..
T Consensus        15 wk~~~~~~~q~~~~le~El~-------EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~---------L~~E~e~~k~K   78 (189)
T 2v71_A           15 WKELSMKYKQSFQEARDELV-------EFQEGSRELEAELEAQLVQAEQRNRDLQADNQR---------LKYEVEALKEK   78 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHH
Confidence            55555555555555554 33       334566678887777777777766665533322         22333333333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhhh-hhcchhhhhhhhHHHhHHHHHHHHHHHHHHHHhHHHH
Q 022606           94 CNNLRLSLRNANLQAKANMRKAAQEERELLLGGGEESTIRRR-NLQTKAGMTSAAESITESLRRTRQLMVQEVERNASTL  172 (294)
Q Consensus        94 L~~Lr~~~rkA~l~ak~~~~~~~~~eReeLL~~~~~~~~r~r-~~~~~~~l~~~s~~~T~~L~rt~~~m~~~le~g~~~L  172 (294)
                      +...+..+-+....-.+.+... +..++.|-       .+-| .-..+|.+-.+....+.+|......+...+++.+..-
T Consensus        79 ~~~~~~e~~~~~~~Lq~el~~l-~~~~~~l~-------~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE  150 (189)
T 2v71_A           79 LEHQYAQSYKQVSVLEDDLSQT-RAIKEQLH-------KYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLE  150 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH-------HHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            3333333222221111111110 01111110       0001 1133455555555667888888888888999988888


Q ss_pred             HhHHhhhHHHHHHH
Q 022606          173 MTFDESTGVLRKAE  186 (294)
Q Consensus       173 ~~L~~q~~tL~~t~  186 (294)
                      ..|.+ ...|.-..
T Consensus       151 ~El~E-Ke~l~~~~  163 (189)
T 2v71_A          151 SELDE-KESLLVSV  163 (189)
T ss_dssp             HHHHH-HHHHHCCC
T ss_pred             HHHHH-HHHHHHHH
Confidence            88876 55554333

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	294
d1vcsa1	89	Vesicle transport v-SNARE protein Vti1-like 2 {Mou	99.45

>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Vesicle transport v-SNARE protein Vti1-like 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.45  E-value=1.2e-13  Score=104.90  Aligned_cols=88  Identities=14%  Similarity=0.252  Sum_probs=77.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHhHHHHHHHHH
Q 022606            9 EKAKKEWDEAYAKTQAHIKAIENYGKSREEKEKSSNSLQRLNGLAQDGLNLLNSLHLKLDLLAPQLPTSDQVQSAQSLLQ   88 (294)
Q Consensus         9 ~~~~~~~~~l~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~l~~~ie~ldl~a~~~~~~~~r~~~~~rV~   88 (294)
                      |+||.+||.++.+++.+|..|..++  |.   ++++.+.+++.    .|+++..+|++|+++|+.+| ++.|..+..+++
T Consensus         1 E~YE~~y~~l~a~i~~kl~~i~~~~--ge---erk~~l~~ie~----~leEA~ell~qMelEvr~~p-~s~R~~~~~klr   70 (89)
T d1vcsa1           1 EGYEQDFAVLTAEITSKIARVPRLP--PD---EKKQMVANVEK----QLEEARELLEQMDLEVREIP-PQSRGMYSNRMR   70 (89)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHGGGSC--TT---THHHHHHHHHH----HHHHHHHHHHHHHHHHTTSC-TTTHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHcCC--ch---HHHHHHHHHHH----hHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHH
Confidence            5799999999999999999999876  32   45565655555    79999999999999999987 667999999999


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 022606           89 SWKKECNNLRLSLRNANL  106 (294)
Q Consensus        89 ~~k~dL~~Lr~~~rkA~l  106 (294)
                      .||.||..++.+|++|.+
T Consensus        71 ~Yk~dl~~lk~elk~a~~   88 (89)
T d1vcsa1          71 SYKQEMGKLETDFKRSRI   88 (89)
T ss_dssp             HHHHHHHHHHHHTHHHHT
T ss_pred             HHHHHHHHHHHHHHhhcc
Confidence            999999999999999874