Citrus Sinensis ID: 022622

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290----
Protein Sequence
MTQFFLFPNSMYQIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKLFYAEYLLIHFLR
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHccccccHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccEEccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHEEEEEHcccccHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHEccccccHHcHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHccccccccHHccccEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mtqfflfpnsmyqivgitsiailplqsfadltPKYFMEFLKALLSAVLMNNYVGTVNQVADVeidkvnkpdlplasgdlsmgTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGtaysvdlpflrwktkpflagmCMVTVFGLVYQFSFFIHFQKyvlgrpvvitRPLIFAAAIISTISAVMSLLkdipdedgdkqfgfqsissklgkenVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVdlsnnastysFYMFIWKLFYAEYLLIHFLR
Flexible Loop (DISEMBL)
MTQFFLFPNSMYQIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSissklgkenVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKLFYAEYLLIHFLR
Low Complexity Region (SEG)
MTQFFLFPNSMYQIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGlaitltlsltslaialslQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLifaaaiistisaVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKLFYAEYLLIHFLR
Disordered region (IsUnstruct)
***FFLFPNSMYQIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDE***KQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKLFYAEYLLIHFL*
Disordered Region (DISOPRED)
*TQFFLFPNSMYQIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKLFYAEYLLIHFLR
Disordered Region (DISEMBL)
MTQFFLFPNSMYQIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKLFYAEYLLIHFLR
Disordered Region (DISPRO)
MTQFFLFPNSMYQIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKLFYAEYLLIHFLR
Transmembrane Helix (TMHMM)
iiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHi
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTQFFLFPNSMYQIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKLFYAEYLLIHFLR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	294	2.2.26 [Sep-21-2011]
Q8VWJ1	393	Homogentisate phytyltrans	yes	no	0.955	0.715	0.483	3e-73
B7FA90	404	Probable homogentisate ph	no	no	0.952	0.693	0.446	8e-70
B1B3P3	410	Naringenin 8-dimethylally	N/A	no	0.986	0.707	0.405	1e-60
B9A1Q4	409	Glycinol 4-dimethylallylt	no	no	0.979	0.704	0.4	7e-56
Q1ACB3	386	Homogentisate phytyltrans	no	no	0.857	0.652	0.337	6e-26
Q0D576	379	Probable homogentisate ph	no	no	0.823	0.638	0.302	1e-23
Q9Z5D6	302	Bacteriochlorophyll synth	yes	no	0.683	0.665	0.264	2e-07
A3CW74	279	Digeranylgeranylglyceryl	yes	no	0.585	0.616	0.292	1e-06
B1L6Z7	281	Digeranylgeranylglyceryl	yes	no	0.476	0.498	0.286	1e-06
Q9UWY6	282	Digeranylgeranylglyceryl	yes	no	0.591	0.617	0.252	1e-06

>sp|Q8VWJ1|HPT1_ARATH Homogentisate phytyltransferase 1, chloroplastic OS=Arabidopsis thaliana GN=VTE2-1 PE=2 SV=1

 Score =  275 bits (703), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 136/281 (48%), Positives = 197/281 (70%)

Query: 14  IVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLP 73
           ++ I S++ L ++  +D++P  F   L+A+++A++MN Y+  +NQ++DVEIDKVNKP LP
Sbjct: 113 VLSILSVSFLAVEKVSDISPLLFTGILEAVVAALMMNIYIVGLNQLSDVEIDKVNKPYLP 172

Query: 74  LASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTK 133
           LASG+ S+ TG+AI  + S+ S  +   + S PL + L V F+LGTAYS++LP LRWK  
Sbjct: 173 LASGEYSVNTGIAIVASFSIMSFWLGWIVGSWPLFWALFVSFMLGTAYSINLPLLRWKRF 232

Query: 134 PFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIP 193
             +A MC++ V  ++ Q +F++H Q +V GRP++ TRPLIFA A +S  S V++L KDIP
Sbjct: 233 ALVAAMCILAVRAIIVQIAFYLHIQTHVFGRPILFTRPLIFATAFMSFFSVVIALFKDIP 292

Query: 194 DEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTL 253
           D +GDK FG +S S  LG++ V   CV  L  AY V+++VGA+S F   K++S++GH  L
Sbjct: 293 DIEGDKIFGIRSFSVTLGQKRVFWTCVTLLQMAYAVAILVGATSPFIWSKVISVVGHVIL 352

Query: 254 AFLLWLRAQTVDLSNNASTYSFYMFIWKLFYAEYLLIHFLR 294
           A  LW RA++VDLS+     S YMFIWKLFYAEYLL+ FL+
Sbjct: 353 ATTLWARAKSVDLSSKTEITSCYMFIWKLFYAEYLLLPFLK 393

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone. Tocopherol functions to limit lipid oxidation during seed desiccation, quiescence and germination and early seedling development. Protects thylakoid membrane lipids from photooxidation and is required for low-temperature adaptation.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: nEC: 8

>sp|B7FA90|HPT1_ORYSJ Probable homogentisate phytyltransferase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=HPT1 PE=2 SV=1

 Score =  264 bits (674), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 125/280 (44%), Positives = 195/280 (69%)

Query: 15  VGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPL 74
           + I S+++L +++ +D++P +    L+A+++A+ MN Y+  +NQ+ D+EIDKVNKP LPL
Sbjct: 125 LSIVSVSLLAVENLSDVSPLFLTGLLEAVVAALFMNIYIVGLNQLFDIEIDKVNKPTLPL 184

Query: 75  ASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKP 134
           ASG+ S  TG+A+    +  S  +  ++ S PL   L + F+LGTAYS++LPFLRWK   
Sbjct: 185 ASGEYSPATGVALVSAFAAMSFGLGWAVGSQPLFLALFISFILGTAYSINLPFLRWKRSA 244

Query: 135 FLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPD 194
            +A +C++ V  ++ Q +FF+H Q +V  RP V TRPLIFA A ++  S V++L KDIPD
Sbjct: 245 VVAALCILAVRAVIVQLAFFLHIQTFVFRRPAVFTRPLIFATAFMTFFSVVIALFKDIPD 304

Query: 195 EDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLA 254
            +GD+ FG +S S +LG++ V  +CV  L  AY V++++GA+S+    K  +++GH+ LA
Sbjct: 305 IEGDRIFGIKSFSVRLGQKKVFWICVGLLEMAYCVAILMGATSACLWSKYATVVGHAILA 364

Query: 255 FLLWLRAQTVDLSNNASTYSFYMFIWKLFYAEYLLIHFLR 294
            +LW R++++DL++  +  SFYMFIWKLFYAEYLLI  +R
Sbjct: 365 AILWNRSRSIDLTSKTAITSFYMFIWKLFYAEYLLIPLVR 404

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydroquinone.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|B1B3P3|N8DT1_SOPFL Naringenin 8-dimethylallyltransferase 1, chloroplastic OS=Sophora flavescens GN=N8DT-1 PE=1 SV=1

 Score =  233 bits (594), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 118/291 (40%), Positives = 184/291 (63%), Gaps = 1/291 (0%)

Query: 5   FLFPNSMYQIV-GITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVE 63
           F  P +M+ IV G T  +++ ++  +DL+  +F+ +L+ +++ + ++ +   +NQ+ D+E
Sbjct: 120 FCRPYAMFTIVLGATFKSLVAVEKLSDLSLAFFIGWLQVVVAVICIHIFGVGLNQLCDIE 179

Query: 64  IDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSV 123
           IDK+NKPDLPLASG LS    + IT +  +  L  A  + S PL + + +  ++ +AY+V
Sbjct: 180 IDKINKPDLPLASGKLSFRNVVIITASSLILGLGFAWIVDSWPLFWTVFISCMVASAYNV 239

Query: 124 DLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTIS 183
           DLP LRWK  P L  +  +    +     FF+H Q  V  RP    RPLIF  AI+S  +
Sbjct: 240 DLPLLRWKKYPVLTAINFIADVAVTRSLGFFLHMQTCVFKRPTTFPRPLIFCTAIVSIYA 299

Query: 184 AVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVK 243
            V++L KDIPD +GD++FG QS+S +LG + V  +CV  L   YGV+++VGA+S     K
Sbjct: 300 IVIALFKDIPDMEGDEKFGIQSLSLRLGPKRVFWICVSLLEMTYGVTILVGATSPILWSK 359

Query: 244 LVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKLFYAEYLLIHFLR 294
           +++++GH+ LA +LW  A++VDL++N   +SFYMFIWKL  AEY LI   R
Sbjct: 360 IITVLGHAVLASVLWYHAKSVDLTSNVVLHSFYMFIWKLHTAEYFLIPLFR 410

Involved in the biosynthesis of sophoraflavanone G (SFG). Can use flavanones (naringenin, liquiritigenin and hesperetin) as substrates, but not flavonols or isoflavones. Shows a strict specificity for dimethylallyl diphosphate.

Sophora flavescens (taxid: 49840)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 7

EC: 0

>sp|B9A1Q4|G4DT_SOYBN Glycinol 4-dimethylallyltransferase OS=Glycine max GN=G4DT PE=1 SV=1

 Score =  217 bits (553), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 118/295 (40%), Positives = 178/295 (60%), Gaps = 7/295 (2%)

Query: 4   FFLFPNSMYQIVGIT----SIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQV 59
           +F +P   Y ++GIT    S ++L ++  +D++  + +  L+ +L  + +  Y+  VNQ+
Sbjct: 118 WFSYP---YTMIGITLCAFSSSLLAVEKLSDISLSFLIGVLQGVLPQLFIEIYLCGVNQL 174

Query: 60  ADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGT 119
            D+EIDK+NKP LP+ASG  S  TG+ I+      S        S PLI  L+V     T
Sbjct: 175 YDLEIDKINKPHLPMASGQFSFKTGVIISAAFLALSFGFTWITGSWPLICNLVVIASSWT 234

Query: 120 AYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAII 179
           AYS+D+P LRWK  PF+A MCM++ + L    S+F H Q  VL RP+   R L F  A +
Sbjct: 235 AYSIDVPLLRWKRYPFVAAMCMISTWALALPISYFHHMQTVVLKRPIGFPRSLGFLVAFM 294

Query: 180 STISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSF 239
           +  S  ++L KDIPD +GDK+ G  S + +LG++    +CV     A+GV ++ GAS S 
Sbjct: 295 TFYSLGLALSKDIPDVEGDKEHGIDSFAVRLGQKRAFWICVSFFEMAFGVGILAGASCSH 354

Query: 240 QLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKLFYAEYLLIHFLR 294
              K+ + +G++ LA +LW +A++VDLS+ AST SFYMFIWKL YA + L+  +R
Sbjct: 355 FWTKIFTGMGNAVLASILWYQAKSVDLSDKASTGSFYMFIWKLLYAGFFLMALIR 409

Proposed to be involved in the biosynthesis of pterocarpan phytoalexins, specifically glyceollins. Can act as a prenyltransferase towards glycinol which is the direct precursor of glyceollins. Seems to be specific for prenylation at C-4 thus producing glyceollin I.

Glycine max (taxid: 3847)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: 6

>sp|Q1ACB3|HPT2_ARATH Homogentisate phytyltransferase 2, chloroplastic OS=Arabidopsis thaliana GN=HPT2 PE=2 SV=1

 Score =  118 bits (295), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 88/261 (33%), Positives = 139/261 (53%), Gaps = 9/261 (3%)

Query: 37  MEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSL 96
           ++ L  LL+ +  N Y+  +NQ+ D+ IDKVNKP LP+A+GDLS+ +   + +  ++  L
Sbjct: 131 LKALSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWLLVIFFAIAGL 190

Query: 97  AIALSLQSPPLIFGLI-VWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFI 155
            + +     P I  L  +   LGT YSV  P LR K  P  A + + TV G +  F  + 
Sbjct: 191 -LVVGFNFGPFITSLYSLGLFLGTIYSV--PPLRMKRFPVAAFLIIATVRGFLLNFGVY- 246

Query: 156 HFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENV 215
           H  +  LG P   + P+ F  + ++  + V+++ KD+PD +GD++F   ++++KLG  N+
Sbjct: 247 HATRAALGLPFQWSAPVAFITSFVTLFALVIAITKDLPDVEGDRKFQISTLATKLGVRNI 306

Query: 216 LRLCVYALFFAYGVSVIVGASSSFQLVK-LVSIIGHSTLAFLLWLRAQTVDLSN--NAST 272
             L    L   Y VS I  A    Q+ +  + I  H  LA  L  +   ++ +N    + 
Sbjct: 307 AFLGSGLLLVNY-VSAISLAFYMPQVFRGSLMIPAHVILASGLIFQTWVLEKANYTKEAI 365

Query: 273 YSFYMFIWKLFYAEYLLIHFL 293
             +Y FIW LFYAEYLL  FL
Sbjct: 366 SGYYRFIWNLFYAEYLLFPFL 386

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|Q0D576|HPT2_ORYSJ Probable homogentisate phytyltransferase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=HPT2 PE=3 SV=2

 Score =  110 bits (275), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/251 (30%), Positives = 126/251 (50%), Gaps = 9/251 (3%)

Query: 42  ALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALS 101
            L++ +  N Y+  +NQ+ D+ IDKVNKP LP+A+GDLS+ T   + +  +    +I ++
Sbjct: 129 GLVALICGNGYIVGINQIYDIRIDKVNKPYLPIAAGDLSVQTAWLLVVLFAAAGFSIVVT 188

Query: 102 LQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYV 161
              P +     +   LGT YSV  P  R K  P  A + + TV G +  F  + +  +  
Sbjct: 189 NFGPFITSLYCLGLFLGTIYSV--PPFRLKRYPVAAFLIIATVRGFLLNFGVY-YATRAA 245

Query: 162 LGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVY 221
           LG     + P+ F    ++  + V+++ KD+PD +GD+++   ++++KLG  N+  L   
Sbjct: 246 LGLTFQWSSPVAFITCFVTLFALVIAITKDLPDVEGDRKYQISTLATKLGVRNIAFLGSG 305

Query: 222 ALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLA----FLLWLRAQTVDLSNNASTYSFYM 277
            L   Y  ++ V         + V +  H+ LA    F  W+  Q     +  S Y  Y 
Sbjct: 306 LLIANYVAAIAVAFLMPQAFRRTVMVPVHAALAVGIIFQTWVLEQAKYTKDAISQY--YR 363

Query: 278 FIWKLFYAEYL 288
           FIW LFYAEY+
Sbjct: 364 FIWNLFYAEYI 374

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|Q9Z5D6|BCHG_RHOS4 Bacteriochlorophyll synthase 33 kDa chain OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=bchG PE=4 SV=1

 Score = 57.0 bits (136), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 59/223 (26%), Positives = 97/223 (43%), Gaps = 22/223 (9%)

Query: 7   FPNSMYQIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDK 66
           FP     + G  S+ I P +       K+ +  L  +L+  L+       N   D  +D 
Sbjct: 28  FPPIWAYLCGTVSVGIWPGE-------KWPLVLLGMVLAGPLVCGMSQAANNWCDRHVDA 80

Query: 67  VNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGT-AYSVDL 125
           VN+PD P+ SG +    GL I L +++ SLA+   L   P  FG  V+ +L   AYSV+ 
Sbjct: 81  VNEPDRPIPSGRIPGRWGLYIALLMTVLSLAVGWMLG--PWGFGATVFGVLAAWAYSVEP 138

Query: 126 PFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPV--VITRPLIFAAAIISTIS 183
             L+ ++  +  G+  +   GL     +F        G P   ++T  L++A      ++
Sbjct: 139 IRLK-RSGWWGPGLVALCYEGL----PWFTGAAVLSAGAPSFFIVTVALLYAFGAHGIMT 193

Query: 184 AVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFA 226
                L D    +GD+Q G +S+   LG E   +L    +  A
Sbjct: 194 -----LNDFKALEGDRQHGVRSLPVMLGPEVAAKLACTVMAMA 231

Catalyzes the esterification of bacteriochlorophyllide a by geranylgeraniol-PPi.

Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) (taxid: 272943)

>sp|A3CW74|DGGGP_METMJ Digeranylgeranylglyceryl phosphate synthase OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=Memar_1697 PE=3 SV=1

 Score = 54.3 bits (129), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/198 (29%), Positives = 91/198 (45%), Gaps = 26/198 (13%)

Query: 33  PKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLS 92
           P   +  + AL++A    N    +N V DVEID++N+PD P+ +GD+S+    A    L 
Sbjct: 36  PSLLLAVIVALITA--GGN---VINDVRDVEIDRINRPDRPIPAGDISLAGARAYAAALF 90

Query: 93  LTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQF- 151
           +  +AIA    +  L   +I   +L   Y+V     R K  P L  + +  + G V+ F 
Sbjct: 91  VGGIAIATLTTTLCLAIAIINSVIL-IVYAV-----RLKRTPVLGNVAVAYLAGSVFLFG 144

Query: 152 SFFIHFQKYVLGRPVVITRPLIFAA-AIISTISAVMSLLKDIPDEDGDKQFGFQSISSKL 210
             F   +  V        R L  AA   ++TI+    LLKD  D DGD   G +++   +
Sbjct: 145 GAFAGIEGLV--------RNLSLAAITFLATIA--RELLKDAEDVDGDAAGGARTLPMIV 194

Query: 211 GKENVLRLCVYALFFAYG 228
           G   V +  ++A   A G
Sbjct: 195 G---VRKTGIFAFACACG 209

Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.

Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) (taxid: 368407)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 2

>sp|B1L6Z7|DGGGP_KORCO Digeranylgeranylglyceryl phosphate synthase OS=Korarchaeum cryptofilum (strain OPF8) GN=Kcr_1480 PE=3 SV=1

 Score = 53.9 bits (128), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 77/157 (49%), Gaps = 17/157 (10%)

Query: 56  VNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWF 115
           +N   D EID +NKP  P+ SG +S    L I + LSL    IALS      IF   + F
Sbjct: 55  INDYYDAEIDAINKPYRPIPSGRISKREALNIYIALSL--FGIALS------IFLGFIEF 106

Query: 116 LLGTAYSVD-LPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIF 174
           L+ TA+S+    + RW  +  + G  +V++       +F + F     G    +T  +I 
Sbjct: 107 LIVTAFSLSWYAYARWLKRTGVPGNALVSL-----GVAFTLIFGSLAAGN---LTNKVII 158

Query: 175 AAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLG 211
            +++  T + +   +K + D  GD+  G ++I+ ++G
Sbjct: 159 FSSVAFTSNLIREFVKAVEDLPGDRAHGVRTIAVRIG 195

Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.

Korarchaeum cryptofilum (strain OPF8) (taxid: 374847)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 2

>sp|Q9UWY6|DGGGP_SULSO Digeranylgeranylglyceryl phosphate synthase OS=Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=ubiA-2 PE=1 SV=1

 Score = 53.9 bits (128), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/194 (25%), Positives = 91/194 (46%), Gaps = 20/194 (10%)

Query: 31  LTPKYFMEFLKALLSAVLMN-----NYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGL 85
           ++ ++++E    LLSA+++       YV  +N V DVEIDK+NKP  P+ SG +S+    
Sbjct: 28  VSSQWYLELKGILLSALVVGLIAAGGYV--INDVYDVEIDKINKPYRPIPSGKISVNKAK 85

Query: 86  AITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVF 145
           A+++ L +  +A+++ L    L+  L+    L   Y+ DL     K   F   + + T  
Sbjct: 86  ALSIALFIIGIALSILLNIYALVIALVTAIGL-IYYAKDL-----KKTGFYGNLLVATTT 139

Query: 146 GLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQS 205
            L   +     F    L R ++ T    F       ++ +  ++K I D +GD     ++
Sbjct: 140 ALSIFYGGLAFFSDNWLLRIIIPTLYAFF-------LTLIREIVKGIEDYNGDSLNNVKT 192

Query: 206 ISSKLGKENVLRLC 219
           +++ LG     R+ 
Sbjct: 193 LATTLGINKSWRIA 206

Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids. Can not use other prenyl donors, i.e. farnesyl diphosphate (FPP) and phytyl diphosphate. Moreover, 4-hydroxybenzoate, 1,4-dihydroxy 2-naphthoate, homogentisate, and alpha-glycerophosphate do not function as prenyl acceptor substrates.

Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) (taxid: 273057)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	294
219842170	411	homogentisate geranylgeranyl transferase	0.972	0.695	0.530	1e-81
359476155	397	PREDICTED: probable homogentisate phytyl	1.0	0.740	0.505	3e-81
295656253	401	homogentisate geranylgeranyl transferase	0.938	0.688	0.543	5e-80
224143266	284	predicted protein [Populus trichocarpa]	0.911	0.943	0.544	2e-79
171190284	317	homogentisate geranylgeranyl transferase	0.955	0.886	0.533	1e-78
296082088	398	unnamed protein product [Vitis vinifera]	0.955	0.706	0.496	4e-76
125598038	408	hypothetical protein OsJ_22157 [Oryza sa	0.986	0.710	0.477	2e-73
33391144	404	homogentisic acid geranylgeranyl transfe	0.986	0.717	0.477	2e-73
374461278	407	aromatic prenyltransferase [Epimedium ac	0.952	0.687	0.492	3e-73
218198652	414	hypothetical protein OsI_23899 [Oryza sa	0.986	0.700	0.477	3e-73

>gi|219842170|dbj|BAH10642.1| homogentisate geranylgeranyl transferase [Hevea brasiliensis]

 Score =  308 bits (790), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 158/298 (53%), Positives = 211/298 (70%), Gaps = 12/298 (4%)

Query: 9   NSMYQ----------IVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQ 58
           NS+YQ          I+GITS+++LP+++  DL+P YF+  LKAL+ +VLMN YV  +NQ
Sbjct: 114 NSLYQFSRPHTVIGTIIGITSVSLLPVETIVDLSPTYFIGLLKALVPSVLMNIYVVGLNQ 173

Query: 59  VADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLG 118
           + DVEIDKVNKP LPLASG  SM TG+ I     L SL + ++ QSPPL+  L++ F LG
Sbjct: 174 LFDVEIDKVNKPYLPLASGKFSMATGILIVSASLLLSLYMGITFQSPPLLAALLISFALG 233

Query: 119 TAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAI 178
           + YS++LPFLRWK   FLA  C++ V  +V Q +FF+H QK+VLG+ + I R L+FA A 
Sbjct: 234 SVYSIELPFLRWKKHAFLAASCILIVRAMVVQLAFFVHIQKFVLGKSIFIPRSLMFATAF 293

Query: 179 ISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSS 238
           +   SA ++L KDIPD +GD+ +G QS S  LG+E VL LCV  L  AYG +V+ GASS 
Sbjct: 294 MCFFSAAIALFKDIPDVEGDRDYGIQSFSVSLGQERVLWLCVNMLLVAYGAAVVHGASSP 353

Query: 239 FQL--VKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKLFYAEYLLIHFLR 294
             L  VKL+++IGHST+A++LW++AQ VDL++  S  SFYMFIWKLFYAEY LI F+R
Sbjct: 354 SSLLPVKLITMIGHSTIAWILWMKAQFVDLTSQKSITSFYMFIWKLFYAEYFLIPFVR 411

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476155|ref|XP_002282953.2| PREDICTED: probable homogentisate phytyltransferase 1, chloroplastic-like [Vitis vinifera]

 Score =  308 bits (788), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 150/297 (50%), Positives = 209/297 (70%), Gaps = 3/297 (1%)

Query: 1   MTQFFLF--PNSMY-QIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVN 57
           +  F+LF  P+++   ++GITS+++LPL++ +DL+P +F+  LKA++ +VLMN YV  +N
Sbjct: 101 LRAFYLFSRPHTIIGTVIGITSVSLLPLETISDLSPAFFVGLLKAMVPSVLMNIYVVGLN 160

Query: 58  QVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLL 117
           Q+ DVEIDKVNKP+LPLASGD SM TG  I     L S+ + +  QSPPL   L++ FLL
Sbjct: 161 QIFDVEIDKVNKPELPLASGDFSMETGSQIVFISLLMSVGMGIMFQSPPLFCALLISFLL 220

Query: 118 GTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAA 177
           GTAYS+++P LRWK  P LA  C++ V  +V Q +FF H QK+VLGR +V T+ ++F  A
Sbjct: 221 GTAYSIEIPLLRWKRYPLLAASCILIVRAIVVQLAFFAHIQKHVLGRSIVYTKSVVFGVA 280

Query: 178 IISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASS 237
            +   S V++L KDIPD DGD++FG QS + KLG++ V  LCV  L  AYG + ++GASS
Sbjct: 281 FMCFFSTVIALFKDIPDVDGDREFGIQSFTVKLGQKKVFWLCVNMLLMAYGAATVIGASS 340

Query: 238 SFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKLFYAEYLLIHFLR 294
           S   +K  ++  H  LA +LW+RAQ+VDLS+  +  SFYMFIWKLFYAEY LI  +R
Sbjct: 341 SSMPIKFATVFCHCALALVLWVRAQSVDLSSKEAVTSFYMFIWKLFYAEYFLIPLVR 397

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|295656253|gb|ADG26667.1| homogentisate geranylgeranyl transferase [Coriandrum sativum]

 Score =  303 bits (777), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 150/276 (54%), Positives = 195/276 (70%)

Query: 19  SIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGD 78
           S+++LPL S  DL+P +F+ +LKAL+ ++ MN YV  +NQ+ DVEIDKVNKP+LPLASG+
Sbjct: 126 SVSLLPLTSIGDLSPAFFVGYLKALIPSIFMNIYVVGLNQLFDVEIDKVNKPNLPLASGE 185

Query: 79  LSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAG 138
            SMG G AI     L S A+ +  QSPP+ F L++ FL G+AYSV+LP LRWK   FLA 
Sbjct: 186 YSMGLGKAIVSAFGLMSFAMGIVFQSPPVFFALLICFLFGSAYSVELPLLRWKRNAFLAA 245

Query: 139 MCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGD 198
             ++ V  +    +FF H QKYVLGRP+V  R L FA   IS  + V++L KDIPD DGD
Sbjct: 246 FSILMVRAITVNLAFFYHIQKYVLGRPMVFPRSLCFATVCISMFTTVIALFKDIPDVDGD 305

Query: 199 KQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLW 258
           + FG QS S  LG++ V  LC+  L  AY  ++++GASSSF L KLV++IGH TLA +LW
Sbjct: 306 RDFGIQSFSVCLGQKRVFWLCIGILLIAYASALVIGASSSFLLSKLVTVIGHCTLASILW 365

Query: 259 LRAQTVDLSNNASTYSFYMFIWKLFYAEYLLIHFLR 294
            RA +V+L +N+S  SFYM IWKLFYAEYLLI F+R
Sbjct: 366 RRANSVNLEDNSSMTSFYMSIWKLFYAEYLLIPFVR 401

Source: Coriandrum sativum

Species: Coriandrum sativum

Genus: Coriandrum

Family: Apiaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224143266|ref|XP_002324898.1| predicted protein [Populus trichocarpa] gi|222866332|gb|EEF03463.1| predicted protein [Populus trichocarpa]

 Score =  301 bits (772), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 146/268 (54%), Positives = 198/268 (73%)

Query: 14  IVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLP 73
           ++GITS+++LP+++ ++L+P +FM  LKAL+ +VLMN YV  +NQ+ DVEIDKVNKP LP
Sbjct: 17  LIGITSVSLLPVETISELSPTFFMGLLKALVPSVLMNIYVVGLNQLFDVEIDKVNKPYLP 76

Query: 74  LASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTK 133
           LASGD SMGTG+AI     L S A+ +  QSP L   L++  +LG+ YS++LPFLRWK +
Sbjct: 77  LASGDFSMGTGVAIVSASLLASFAMGIMFQSPLLFSALLISCVLGSVYSIELPFLRWKKQ 136

Query: 134 PFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIP 193
            FLA  C++ V  +V Q +FF+H QK+VLG+  V+TR L+FA A +   SAV++L KDIP
Sbjct: 137 AFLAATCIMIVRAIVVQLAFFVHMQKFVLGKTTVVTRSLVFATAFMCFFSAVIALFKDIP 196

Query: 194 DEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTL 253
           D DGD+ +G QS S  LG+E V  LCV  L  AYG +V+VGASS+F   K ++I+GH TL
Sbjct: 197 DVDGDRDYGIQSFSVSLGQERVFWLCVNMLLIAYGAAVVVGASSTFLPSKFITILGHCTL 256

Query: 254 AFLLWLRAQTVDLSNNASTYSFYMFIWK 281
           AF+LWLRA++VDL++  S  SFYMFIWK
Sbjct: 257 AFILWLRARSVDLTSKDSITSFYMFIWK 284

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|171190284|gb|ACB42448.1| homogentisate geranylgeranyl transferase [Angelica gigas]

 Score =  299 bits (765), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 150/281 (53%), Positives = 198/281 (70%)

Query: 14  IVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLP 73
           IVGITS+++LPL SF DL+P +F+  LK ++  V +N YV  +NQ+ DVEIDKVNKP+LP
Sbjct: 37  IVGITSVSLLPLVSFEDLSPAFFVGLLKVMIPIVCVNIYVVGLNQLYDVEIDKVNKPNLP 96

Query: 74  LASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTK 133
           +ASG+ SM TG AI     L S+ + +  QSPP+++ L+V F  GTAYS+D+P  RWK  
Sbjct: 97  IASGEYSMETGKAIVSAFGLMSIIMGIMFQSPPVLYCLLVCFFFGTAYSIDVPLFRWKKN 156

Query: 134 PFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIP 193
            FLA MC+V V  +  Q + F H Q+YVLGRPV+ +R L FA   ++    V++L KDIP
Sbjct: 157 AFLAAMCIVIVRAITVQLTVFYHIQQYVLGRPVLFSRSLAFAIICMTLFVTVIALFKDIP 216

Query: 194 DEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTL 253
           D DGD+ FG Q+I+  LGK+ V  LC+  L  AYG +V++G+SSS  L KLV++ GH  L
Sbjct: 217 DVDGDRDFGIQTITVTLGKKRVFWLCITILLIAYGSAVVIGSSSSLLLSKLVTVTGHCIL 276

Query: 254 AFLLWLRAQTVDLSNNASTYSFYMFIWKLFYAEYLLIHFLR 294
           A +LW RA +VDL +N S  SFYMFIWKLFYAEYLLI F+R
Sbjct: 277 ASILWSRAISVDLESNKSITSFYMFIWKLFYAEYLLIPFVR 317

Source: Angelica gigas

Species: Angelica gigas

Genus: Angelica

Family: Apiaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082088|emb|CBI21093.3| unnamed protein product [Vitis vinifera]

 Score =  290 bits (743), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 141/284 (49%), Positives = 199/284 (70%), Gaps = 3/284 (1%)

Query: 1   MTQFFLF--PNSMY-QIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVN 57
           +  F+LF  P+++   ++GITS+++LPL++ +DL+P +F+  LKA++ +VLMN YV  +N
Sbjct: 77  LRAFYLFSRPHTIIGTVIGITSVSLLPLETISDLSPAFFVGLLKAMVPSVLMNIYVVGLN 136

Query: 58  QVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLL 117
           Q+ DVEIDKVNKP+LPLASGD SM TG  I     L S+ + +  QSPPL   L++ FLL
Sbjct: 137 QIFDVEIDKVNKPELPLASGDFSMETGSQIVFISLLMSVGMGIMFQSPPLFCALLISFLL 196

Query: 118 GTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAA 177
           GTAYS+++P LRWK  P LA  C++ V  +V Q +FF H QK+VLGR +V T+ ++F  A
Sbjct: 197 GTAYSIEIPLLRWKRYPLLAASCILIVRAIVVQLAFFAHIQKHVLGRSIVYTKSVVFGVA 256

Query: 178 IISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASS 237
            +   S V++L KDIPD DGD++FG QS + KLG++ V  LCV  L  AYG + ++GASS
Sbjct: 257 FMCFFSTVIALFKDIPDVDGDREFGIQSFTVKLGQKKVFWLCVNMLLMAYGAATVIGASS 316

Query: 238 SFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWK 281
           S   +K  ++  H  LA +LW+RAQ+VDLS+  +  SFYMFIWK
Sbjct: 317 SSMPIKFATVFCHCALALVLWVRAQSVDLSSKEAVTSFYMFIWK 360

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125598038|gb|EAZ37818.1| hypothetical protein OsJ_22157 [Oryza sativa Japonica Group]

 Score =  281 bits (720), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 139/291 (47%), Positives = 197/291 (67%), Gaps = 1/291 (0%)

Query: 5   FLFPNSMY-QIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVE 63
           F  P++++  I+GITS+++LP++S  D T K    FL+AL S++ MN YV  +NQ+ D++
Sbjct: 118 FCRPHTIFGTIIGITSVSLLPMRSLDDFTMKALWGFLEALSSSLCMNIYVVGLNQLYDIQ 177

Query: 64  IDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSV 123
           IDKVNKP LPLASG+ S+ TG  + LT  + S+AI +  +S PL+  L + F LG+AYSV
Sbjct: 178 IDKVNKPSLPLASGEFSVATGAVLVLTSLIMSIAIGIRSKSAPLLCALFISFFLGSAYSV 237

Query: 124 DLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTIS 183
           D P LRWK   FLA  C++ V  ++ Q +FF H Q++VL RP+  T+ ++FA   +   S
Sbjct: 238 DAPLLRWKRNAFLAASCILFVRAVLVQLAFFAHMQQHVLKRPLAPTKSVVFATLFMCCFS 297

Query: 184 AVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVK 243
           +V++L KDIPD DGD+ FG +S+S +LG E V  LC+  L  AYG +++ GASS+     
Sbjct: 298 SVIALFKDIPDIDGDRHFGVESLSVRLGPERVYWLCINILLTAYGAAILAGASSTNLCQM 357

Query: 244 LVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKLFYAEYLLIHFLR 294
           ++++ GH  LAF LW RAQ  D+ N A   SFYMFIWKLFYAEY LI F++
Sbjct: 358 IITVFGHGLLAFALWQRAQHCDVENKAWITSFYMFIWKLFYAEYFLIPFVQ 408

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|33391144|gb|AAP43913.1| homogentisic acid geranylgeranyl transferase [Oryza sativa Japonica Group]

 Score =  281 bits (719), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 139/291 (47%), Positives = 197/291 (67%), Gaps = 1/291 (0%)

Query: 5   FLFPNSMY-QIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVE 63
           F  P++++  I+GITS+++LP++S  D T K    FL+AL S++ MN YV  +NQ+ D++
Sbjct: 114 FCRPHTIFGTIIGITSVSLLPMRSLDDFTMKALWGFLEALSSSLCMNIYVVGLNQLYDIQ 173

Query: 64  IDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSV 123
           IDKVNKP LPLASG+ S+ TG  + LT  + S+AI +  +S PL+  L + F LG+AYSV
Sbjct: 174 IDKVNKPSLPLASGEFSVATGAVLVLTSLIMSIAIGIRSKSAPLLCALFISFFLGSAYSV 233

Query: 124 DLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTIS 183
           D P LRWK   FLA  C++ V  ++ Q +FF H Q++VL RP+  T+ ++FA   +   S
Sbjct: 234 DAPLLRWKRNAFLAASCILFVRAVLVQLAFFAHMQQHVLKRPLAPTKSVVFATLFMCCFS 293

Query: 184 AVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVK 243
           +V++L KDIPD DGD+ FG +S+S +LG E V  LC+  L  AYG +++ GASS+     
Sbjct: 294 SVIALFKDIPDIDGDRHFGVESLSVRLGPERVYWLCINILLTAYGAAILAGASSTNLCQM 353

Query: 244 LVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKLFYAEYLLIHFLR 294
           ++++ GH  LAF LW RAQ  D+ N A   SFYMFIWKLFYAEY LI F++
Sbjct: 354 IITVFGHGLLAFALWQRAQHCDVENKAWITSFYMFIWKLFYAEYFLIPFVQ 404

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|374461278|gb|AEZ53107.1| aromatic prenyltransferase [Epimedium acuminatum]

 Score =  281 bits (718), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 138/280 (49%), Positives = 200/280 (71%)

Query: 15  VGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPL 74
           + I S+++L ++  +DL+P +F   L+A+++A+ MN Y+  +NQ+ DVEIDKVNKP LPL
Sbjct: 128 LSILSVSLLAIERLSDLSPLFFTGLLEAIVAALFMNIYIVGLNQLFDVEIDKVNKPYLPL 187

Query: 75  ASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKP 134
           ASG+ S+GTG+ I    ++ S  +   + S PL++ L + F+LGTAYS++LP LRWK   
Sbjct: 188 ASGEYSIGTGILIVAAFAVMSFWLGWFVGSGPLLWALSISFILGTAYSINLPLLRWKRFA 247

Query: 135 FLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPD 194
            +A MC++ V  ++ Q +FF+H Q +V  RP ++TRPLIFA A +S  S V++L KDIPD
Sbjct: 248 LVAAMCILAVRAVIVQLAFFLHIQTFVYRRPAILTRPLIFATAFMSFFSVVIALFKDIPD 307

Query: 195 EDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLA 254
            +GD  FG +S + +LG++ V  +CVY L  AYGV+V+VGA+S   L KLV+++GH  LA
Sbjct: 308 IEGDAIFGIRSFTVRLGQKRVFWICVYLLEMAYGVAVLVGAASPSPLSKLVTVLGHVVLA 367

Query: 255 FLLWLRAQTVDLSNNASTYSFYMFIWKLFYAEYLLIHFLR 294
            +LWL A++VDL+N  +  SFYMFIWKLFYAEYLLI  +R
Sbjct: 368 SILWLNAKSVDLTNKTAITSFYMFIWKLFYAEYLLIPLVR 407

Source: Epimedium acuminatum

Species: Epimedium acuminatum

Genus: Epimedium

Family: Berberidaceae

Order: Ranunculales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218198652|gb|EEC81079.1| hypothetical protein OsI_23899 [Oryza sativa Indica Group]

 Score =  281 bits (718), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 139/291 (47%), Positives = 197/291 (67%), Gaps = 1/291 (0%)

Query: 5   FLFPNSMY-QIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVE 63
           F  P++++  I+GITS+++LP++S  D T K    FL+AL S++ MN YV  +NQ+ D++
Sbjct: 124 FCRPHTIFGTIIGITSVSLLPMRSLDDFTMKALWGFLEALSSSLCMNIYVVGLNQLYDIQ 183

Query: 64  IDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSV 123
           IDKVNKP LPLASG+ S+ TG  + LT  + S+AI +  +S PL+  L + F LG+AYSV
Sbjct: 184 IDKVNKPSLPLASGEFSVATGAVLVLTSLIMSIAIGIRSKSAPLLCALFISFFLGSAYSV 243

Query: 124 DLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTIS 183
           D P LRWK   FLA  C++ V  ++ Q +FF H Q++VL RP+  T+ ++FA   +   S
Sbjct: 244 DAPLLRWKRNAFLAASCILFVRAVLVQLAFFAHMQQHVLKRPLAPTKSVVFATLFMCCFS 303

Query: 184 AVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVK 243
           +V++L KDIPD DGD+ FG +S+S +LG E V  LC+  L  AYG +++ GASS+     
Sbjct: 304 SVIALFKDIPDIDGDRHFGVESLSVRLGPERVYWLCINILLTAYGAAILAGASSTNLCQM 363

Query: 244 LVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKLFYAEYLLIHFLR 294
           ++++ GH  LAF LW RAQ  D+ N A   SFYMFIWKLFYAEY LI F++
Sbjct: 364 IITVFGHGLLAFALWQRAQHCDVENKAWITSFYMFIWKLFYAEYFLIPFVQ 414

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	294
TAIR|locus:2044440	393	HPT1 "homogentisate phytyltran	0.989	0.740	0.438	1.6e-63
UNIPROTKB|B1B3P3	410	N8DT-1 "Naringenin 8-dimethyla	0.986	0.707	0.374	2.1e-52
UNIPROTKB|B1B5P4	407	SfN8DT-2 "Naringenin 8-dimethy	0.986	0.712	0.367	1.9e-51
TAIR|locus:4010713740	393	HST "homogentisate prenyltrans	0.969	0.725	0.309	5.7e-27

TAIR|locus:2044440 HPT1 "homogentisate phytyltransferase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 648 (233.2 bits), Expect = 1.6e-63, P = 1.6e-63
 Identities = 129/294 (43%), Positives = 188/294 (63%)

Query:     4 FFLF--PNSMY-QIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVA 60
             F+ F  P+++   ++ I S++ L ++  +D++P  F   L+A+++A++MN Y+  +NQ++
Sbjct:   100 FYRFSRPHTVIGTVLSILSVSFLAVEKVSDISPLLFTGILEAVVAALMMNIYIVGLNQLS 159

Query:    61 DVEIDKVNKPDLPLASGDLSMGTGXXXXXXXXXXXXXXXXXXQSPPLIFGLIVWFLLGTA 120
             DVEIDKVNKP LPLASG+ S+ TG                   S PL + L V F+LGTA
Sbjct:   160 DVEIDKVNKPYLPLASGEYSVNTGIAIVASFSIMSFWLGWIVGSWPLFWALFVSFMLGTA 219

Query:   121 YSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLXXXXXXXX 180
             YS++LP LRWK    +A MC++ V  ++ Q +F++H Q +V GRP++ TRPL        
Sbjct:   220 YSINLPLLRWKRFALVAAMCILAVRAIIVQIAFYLHIQTHVFGRPILFTRPLIFATAFMS 279

Query:   181 XXXXVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQ 240
                 V++L KDIPD +GDK FG +S S  LG++ V   CV  L  AY V+++VGA+S F 
Sbjct:   280 FFSVVIALFKDIPDIEGDKIFGIRSFSVTLGQKRVFWTCVTLLQMAYAVAILVGATSPFI 339

Query:   241 LVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKLFYAEYLLIHFLR 294
               K++S++GH  LA  LW RA++VDLS+     S YMFIWKLFYAEYLL+ FL+
Sbjct:   340 WSKVISVVGHVILATTLWARAKSVDLSSKTEITSCYMFIWKLFYAEYLLLPFLK 393

GO:0004659 "prenyltransferase activity" evidence=IEA;IDA

GO:0005886 "plasma membrane" evidence=ISM

GO:0010189 "vitamin E biosynthetic process" evidence=IMP;TAS

GO:0016021 "integral to membrane" evidence=IEA

GO:0009507 "chloroplast" evidence=ISS

GO:0010176 "homogentisate phytyltransferase activity" evidence=IMP;IDA

GO:0042362 "fat-soluble vitamin biosynthetic process" evidence=TAS

GO:0009266 "response to temperature stimulus" evidence=IMP

GO:0009915 "phloem sucrose loading" evidence=IMP

GO:0031347 "regulation of defense response" evidence=IMP

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA;IMP

GO:0071555 "cell wall organization" evidence=IMP

GO:0000096 "sulfur amino acid metabolic process" evidence=RCA

GO:0006546 "glycine catabolic process" evidence=RCA

GO:0006733 "oxidoreduction coenzyme metabolic process" evidence=RCA

GO:0006766 "vitamin metabolic process" evidence=RCA

GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA

GO:0009072 "aromatic amino acid family metabolic process" evidence=RCA

GO:0009106 "lipoate metabolic process" evidence=RCA

GO:0009108 "coenzyme biosynthetic process" evidence=RCA

GO:0009117 "nucleotide metabolic process" evidence=RCA

GO:0009416 "response to light stimulus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0015994 "chlorophyll metabolic process" evidence=RCA

GO:0019216 "regulation of lipid metabolic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019748 "secondary metabolic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0031408 "oxylipin biosynthetic process" evidence=RCA

GO:0044272 "sulfur compound biosynthetic process" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

UNIPROTKB|B1B3P3 N8DT-1 "Naringenin 8-dimethylallyltransferase 1, chloroplastic" [Sophora flavescens (taxid:49840)]

 Score = 543 (196.2 bits), Expect = 2.1e-52, P = 2.1e-52
 Identities = 109/291 (37%), Positives = 169/291 (58%)

Query:     5 FLFPNSMYQIV-GITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVE 63
             F  P +M+ IV G T  +++ ++  +DL+  +F+ +L+ +++ + ++ +   +NQ+ D+E
Sbjct:   120 FCRPYAMFTIVLGATFKSLVAVEKLSDLSLAFFIGWLQVVVAVICIHIFGVGLNQLCDIE 179

Query:    64 IDKVNKPDLPLASGDLSMGTGXXXXXXXXXXXXXXXXXXQSPPLIFGLIVWFLLGTAYSV 123
             IDK+NKPDLPLASG LS                       S PL + + +  ++ +AY+V
Sbjct:   180 IDKINKPDLPLASGKLSFRNVVIITASSLILGLGFAWIVDSWPLFWTVFISCMVASAYNV 239

Query:   124 DLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLXXXXXXXXXXX 183
             DLP LRWK  P L  +  +    +     FF+H Q  V  RP    RPL           
Sbjct:   240 DLPLLRWKKYPVLTAINFIADVAVTRSLGFFLHMQTCVFKRPTTFPRPLIFCTAIVSIYA 299

Query:   184 XVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVK 243
              V++L KDIPD +GD++FG QS+S +LG + V  +CV  L   YGV+++VGA+S     K
Sbjct:   300 IVIALFKDIPDMEGDEKFGIQSLSLRLGPKRVFWICVSLLEMTYGVTILVGATSPILWSK 359

Query:   244 LVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKLFYAEYLLIHFLR 294
             +++++GH+ LA +LW  A++VDL++N   +SFYMFIWKL  AEY LI   R
Sbjct:   360 IITVLGHAVLASVLWYHAKSVDLTSNVVLHSFYMFIWKLHTAEYFLIPLFR 410

GO:0004659 "prenyltransferase activity" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

UNIPROTKB|B1B5P4 SfN8DT-2 "Naringenin 8-dimethylallyltransferase" [Sophora flavescens (taxid:49840)]

 Score = 534 (193.0 bits), Expect = 1.9e-51, P = 1.9e-51
 Identities = 107/291 (36%), Positives = 167/291 (57%)

Query:     5 FLFPNSMYQIV-GITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVE 63
             F  P +++ +V G T  +++ ++  +DL+  +F+ +L+ +++ + ++ +   +NQ+ D+E
Sbjct:   117 FCRPYAIFSVVLGATFKSLVAVERLSDLSLAFFIGWLQVVVAVICIHIFDVGLNQLCDIE 176

Query:    64 IDKVNKPDLPLASGDLSMGTGXXXXXXXXXXXXXXXXXXQSPPLIFGLIVWFLLGTAYSV 123
             IDK+NKPDLPLASG+LS                       S PL + + +  +   AY+V
Sbjct:   177 IDKINKPDLPLASGNLSFRNVVIITASSLILGLGFAWIVGSWPLFWTVFICCMFAAAYNV 236

Query:   124 DLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLXXXXXXXXXXX 183
             DLP LRWK  P L  +  +    +     FF+H Q  V  RP    RPL           
Sbjct:   237 DLPLLRWKKYPVLTAISFIANVAVTRSLGFFLHMQTCVFKRPTTFPRPLIFCTAIVSIYA 296

Query:   184 XVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVK 243
              V++L KDIPD +GD++FG QS+S +LG + V  +CV  L  AYGV+++VGA+S     K
Sbjct:   297 IVIALFKDIPDMEGDEKFGIQSLSLRLGPKRVFWICVSLLEMAYGVTILVGATSPILWSK 356

Query:   244 LVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKLFYAEYLLIHFLR 294
             +++++GH+ LA +LW  A++ DL++N    SFYMFIWKL  AEY LI   R
Sbjct:   357 IITVLGHAILASVLWYHAKSTDLTSNVVLQSFYMFIWKLHTAEYCLIPLFR 407

GO:0004659 "prenyltransferase activity" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:4010713740 HST "homogentisate prenyltransferase" [Arabidopsis thaliana (taxid:3702)]

 Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
 Identities = 91/294 (30%), Positives = 139/294 (47%)

Query:     5 FLFPNSMY-QIVGITSIAILPLQSFADLTP-KYFMEFLKALLSAVLMNNYVGTVNQVADV 62
             FL P+++    +G T++    L     L      ++ L  LL+ +  N Y+  +NQ+ D+
Sbjct:   104 FLRPHTIRGTALGSTALVTRALIENTHLIKWSLVLKALSGLLALICGNGYIVGINQIYDI 163

Query:    63 EIDKVNKPDLPLASGDLSMGTGXXXXXXXXXXXXXXXXXXQSPPLIFGLIVWFLLGTAYS 122
              IDKVNKP LP+A+GDLS+ +                     P +     +   LGT YS
Sbjct:   164 GIDKVNKPYLPIAAGDLSVQSAWLLVIFFAIAGLLVVGFNFGPFITSLYSLGLFLGTIYS 223

Query:   123 VDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLXXXXXXXXXX 182
             V  P LR K  P  A + + TV G +  F  + H  +  LG P   + P+          
Sbjct:   224 V--PPLRMKRFPVAAFLIIATVRGFLLNFGVY-HATRAALGLPFQWSAPVAFITSFVTLF 280

Query:   183 XXVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLV 242
               V+++ KD+PD +GD++F   ++++KLG  N+  L    L   Y VS I  A    Q+ 
Sbjct:   281 ALVIAITKDLPDVEGDRKFQISTLATKLGVRNIAFLGSGLLLVNY-VSAISLAFYMPQVF 339

Query:   243 K-LVSIIGHSTLAFLLWLRAQTVDLSN--NASTYSFYMFIWKLFYAEYLLIHFL 293
             +  + I  H  LA  L  +   ++ +N    +   +Y FIW LFYAEYLL  FL
Sbjct:   340 RGSLMIPAHVILASGLIFQTWVLEKANYTKEAISGYYRFIWNLFYAEYLLFPFL 393


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.329   0.143   0.434    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      294       264   0.00092  114 3  11 22  0.36    33
                                                     32  0.50    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  594 (63 KB)
  Total size of DFA:  182 KB (2104 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  18.35u 0.14s 18.49t   Elapsed:  00:00:01
  Total cpu time:  18.35u 0.14s 18.49t   Elapsed:  00:00:01
  Start:  Fri May 10 08:54:03 2013   End:  Fri May 10 08:54:04 2013

GO:0004161 "dimethylallyltranstransferase activity" evidence=NAS

GO:0004659 "prenyltransferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0010236 "plastoquinone biosynthetic process" evidence=IMP

GO:0010355 "homogentisate farnesyltransferase activity" evidence=IDA

GO:0010356 "homogentisate geranylgeranyltransferase activity" evidence=IDA

GO:0010357 "homogentisate solanesyltransferase activity" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0016117 "carotenoid biosynthetic process" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.5.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.XVIII.1796.1	homogentisate phytyltransferase (284 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	fgenesh4_pm.C_LG_II000277	4-hydroxyphenylpyruvate dioxygenase (EC-1.13.11.27) (444 aa)						•	•		0.901
	grail3.0003038902	MPBQ/MSBQ methyltransferase (341 aa)						•			0.899
	eugene3.00051228	SubName- Full=Putative uncharacterized protein; (340 aa)						•			0.899
	eugene3.00051120	4-hydroxyphenylpyruvate dioxygenase (343 aa)						•			0.899
	estExt_fgenesh4_pm.C_LG_VIII0681	MPBQ/MSBQ methyltransferase (341 aa)						•			0.899
	eugene3.00120625	SubName- Full=Putative uncharacterized protein; (470 aa)			•			•			0.840
	fgenesh4_pg.C_scaffold_129000030	geranylgeranyl reductase (CHL P) (210 aa)			•			•			0.836
	grail3.0001010701	geranylgeranyl reductase (CHL P) (EC-1.3.1.-) (454 aa)			•			•			0.832
	gw1.66.323.1	geranylgeranyl reductase (CHL P) (EC-1.3.1.-) (413 aa)			•			•			0.829
	eugene3.00012780	annotation not avaliable (326 aa)						•			0.800

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	294
PLN02878	280	PLN02878, PLN02878, homogentisate phytyltransferas	1e-114
PRK12887	308	PRK12887, ubiA, tocopherol phytyltransferase; Revi	4e-58
pfam01040	259	pfam01040, UbiA, UbiA prenyltransferase family	2e-16
COG0382	289	COG0382, UbiA, 4-hydroxybenzoate polyprenyltransfe	6e-13
TIGR01476	283	TIGR01476, chlor_syn_BchG, bacteriochlorophyll/chl	4e-10
PRK07566	314	PRK07566, PRK07566, bacteriochlorophyll/chlorophyl	4e-08
PRK12882	276	PRK12882, ubiA, prenyltransferase; Reviewed	8e-08
PRK09573	279	PRK09573, PRK09573, (S)-2,3-di-O-geranylgeranylgly	7e-06
PRK12883	277	PRK12883, ubiA, prenyltransferase UbiA-like protei	8e-06
PRK12884	279	PRK12884, ubiA, prenyltransferase; Reviewed	9e-06
PRK12872	285	PRK12872, ubiA, prenyltransferase; Reviewed	1e-04
PRK12324	295	PRK12324, PRK12324, phosphoribose diphosphate:deca	2e-04
TIGR02056	306	TIGR02056, ChlG, chlorophyll synthase, ChlG	3e-04
PRK08238	479	PRK08238, PRK08238, hypothetical protein; Validate	7e-04
PLN00012	375	PLN00012, PLN00012, chlorophyll synthetase; Provis	0.002

>gnl|CDD|178466 PLN02878, PLN02878, homogentisate phytyltransferase

 Score =  331 bits (850), Expect = e-114
 Identities = 143/280 (51%), Positives = 199/280 (71%)

Query: 15  VGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPL 74
           +GITS+++L ++S +D +P +F   L+AL+ A+LMN Y+  +NQ+ D+EIDKVNKP LPL
Sbjct: 1   LGITSVSLLAVESLSDFSPLFFTGLLEALVPALLMNIYIVGLNQLYDIEIDKVNKPYLPL 60

Query: 75  ASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKP 134
           ASG+ S+ TG+AI  + ++ S  +   + S PL + L V F+LGTAYS++LP LRWK   
Sbjct: 61  ASGEFSVATGVAIVTSFAIMSFGMGWIVGSWPLFWALFVSFVLGTAYSINLPLLRWKRSA 120

Query: 135 FLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPD 194
             A  C++ V  +V Q +FF+H Q +VLGRP V TRPLIFA A +   S V++L KDIPD
Sbjct: 121 VAAASCILAVRAVVVQLAFFLHMQTHVLGRPAVFTRPLIFATAFMCFFSVVIALFKDIPD 180

Query: 195 EDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLA 254
            +GD+ FG +S S +LG++ V  LCV  L  AY  +++VGASSSF   K+++++GH  LA
Sbjct: 181 VEGDRIFGIRSFSVRLGQKRVFWLCVNLLEMAYAAAILVGASSSFLWSKIITVLGHGILA 240

Query: 255 FLLWLRAQTVDLSNNASTYSFYMFIWKLFYAEYLLIHFLR 294
            +LW RAQ+VDLS+ A+  SFYMFIWKLFYAEY LI  +R
Sbjct: 241 SILWQRAQSVDLSSKAAITSFYMFIWKLFYAEYFLIPLVR 280

Length = 280

>gnl|CDD|183813 PRK12887, ubiA, tocopherol phytyltransferase; Reviewed

 Score =  188 bits (479), Expect = 4e-58
 Identities = 97/277 (35%), Positives = 151/277 (54%), Gaps = 6/277 (2%)

Query: 13  QIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDL 72
            ++G+  IAI    +   L        L A ++ +  N Y+  +NQ+ D+EID++NKP L
Sbjct: 31  SVLGLYLIAIAASSNTIALA--NLGLLLGAWIACLCGNVYIVGLNQLTDIEIDRINKPHL 88

Query: 73  PLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKT 132
           PLA+G+ S   G  I +   + +L +A  L  P L+  + +  L+GTAYS  LP +R K 
Sbjct: 89  PLAAGEFSRRQGQRIVIITGILALILAA-LLGPWLLITVGISLLIGTAYS--LPPIRLKR 145

Query: 133 KPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDI 192
            P LA +C+ TV G++     F+HFQ ++LG  V+I   +      +   +  +++ KDI
Sbjct: 146 FPLLAALCIFTVRGVIVNLGLFLHFQ-WLLGGSVLIPPTVWLLTLFVLVFTFAIAIFKDI 204

Query: 193 PDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHST 252
           PD +GD+Q+   + + +LGK+ V +L  + L   Y   + VG  S   +     I+ H  
Sbjct: 205 PDMEGDRQYQITTFTLRLGKQAVFKLSCWVLTACYLGMIAVGLLSLPTVNPAFLIVSHLI 264

Query: 253 LAFLLWLRAQTVDLSNNASTYSFYMFIWKLFYAEYLL 289
           L  LLW R+Q VDL +  +   FY FIWKLF+ EYLL
Sbjct: 265 LLALLWWRSQRVDLQDKQAIAQFYQFIWKLFFLEYLL 301

Length = 308

>gnl|CDD|216260 pfam01040, UbiA, UbiA prenyltransferase family

 Score = 77.2 bits (190), Expect = 2e-16
 Identities = 70/249 (28%), Positives = 110/249 (44%), Gaps = 18/249 (7%)

Query: 39  FLKALLSAVLMNNYVGTVNQVADVEIDKV--NKPDLPLASGDLSMGTGLAITLTLSLTSL 96
            L  LL+ +L+      +N   D EID    NKPD PL SG +S    L + L L L  L
Sbjct: 25  LLLLLLALLLLQAAGNVLNDYFDYEIDADNPNKPDRPLPSGRISPREALLLGLALLLLGL 84

Query: 97  AIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIH 156
            +AL L    L+ GL+    LG  YS   P LR K +P L  + +   FGL+     +  
Sbjct: 85  LLALLLGPLLLLLGLLGLL-LGLLYS---PPLRLKRRPLLGELVVGLAFGLLILLGAYA- 139

Query: 157 FQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVL 216
                      I  PL+  A  +  +S  + L  DI D +GD++ G +++  +LG++  L
Sbjct: 140 -------VGGDIPSPLLLLALPVFLLSLAILLTNDIRDVEGDRKAGIRTLPVRLGRKRAL 192

Query: 217 RLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFY 276
            L    L  A  + +++    +     L+ ++    LA  L + A+ +   N       +
Sbjct: 193 ALYALLLAAALLLLLLLLLLLAP----LLLLLAVLLLALALLVAARLLRRRNPEEPARTF 248

Query: 277 MFIWKLFYA 285
           +FI  LF  
Sbjct: 249 LFIALLFGL 257

Length = 259

>gnl|CDD|223459 COG0382, UbiA, 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

 Score = 67.3 bits (165), Expect = 6e-13
 Identities = 56/254 (22%), Positives = 98/254 (38%), Gaps = 20/254 (7%)

Query: 39  FLKALLSAVLMNNYVGTVNQVADVEIDKVNKP--DLPLASGDLSMGTGLAITLTLSLTSL 96
            L A L+  L  +    +N +AD EID++N    + PL SG +S+   L + + L L  L
Sbjct: 49  LLLAFLAFFLARSAGYVINDLADREIDRINPRTKNRPLPSGRVSVKEALLLAILLLLLGL 108

Query: 97  AIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIH 156
           A+AL L     +  L    +L  AY         K   FL  + +   FGL         
Sbjct: 109 ALALLLNPLAFLLSLA-ALVLALAY------PFLKRFTFLPQLVLGLAFGLGALAGAAAV 161

Query: 157 FQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVL 216
                L                    +    ++  I D +GD++ G +S+    G +  L
Sbjct: 162 GGSLPL--------LAWLLLLAAILWTLGYDIIYAIQDIEGDRKAGLKSLPVLFGIKKAL 213

Query: 217 RLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFY 276
            L   AL      +++V       L+ L+ ++G    A LL  +   VD+ +  + ++ +
Sbjct: 214 AL---ALLLLLASALLVLLGLLAGLLGLIYLLGLLVAALLLLYQILIVDVRDPPACFALF 270

Query: 277 MFIWKLFYAEYLLI 290
                L    ++ +
Sbjct: 271 DVNLLLGLLLFIGL 284

Length = 289

>gnl|CDD|130541 TIGR01476, chlor_syn_BchG, bacteriochlorophyll/chlorophyll synthetase

 Score = 59.0 bits (143), Expect = 4e-10
 Identities = 40/190 (21%), Positives = 76/190 (40%), Gaps = 28/190 (14%)

Query: 40  LKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIA 99
           L  L++  L   +  ++N   D ++D +N+P  P+ SG +S+       L L++  L +A
Sbjct: 41  LGMLMAGPLGTGFSQSINDYFDRDVDAINEPQRPIPSGIISLREVRWNWLVLTVAGLLVA 100

Query: 100 LSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTK----PFLAGMCMVTV-----FGLVYQ 150
           L L +  ++   +V  +L   YS+  P ++ K      P   G+    +       +   
Sbjct: 101 LVLGNWLIVLFTVVGIVLAVIYSM--PPIKLKRNGWLGPPAVGLSYEGLPWMAGHAIFAP 158

Query: 151 FSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKL 210
            ++            VV+       A  I T       L D    +GD+Q G +S+   +
Sbjct: 159 LTWQS----------VVVALIYSLGAHGIMT-------LNDFKSVEGDRQLGLRSLPVMI 201

Query: 211 GKENVLRLCV 220
           G +    + V
Sbjct: 202 GVKRAAIVAV 211

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 283

>gnl|CDD|236052 PRK07566, PRK07566, bacteriochlorophyll/chlorophyll a synthase; Reviewed

 Score = 53.4 bits (129), Expect = 4e-08
 Identities = 46/185 (24%), Positives = 81/185 (43%), Gaps = 23/185 (12%)

Query: 43  LLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSL 102
           LL+  L+     T+N   D E+D +N+P  P+ SG +S+   L +   L++  LA+A  L
Sbjct: 71  LLAGPLLCGTSQTLNDYFDREVDAINEPYRPIPSGAISLRWVLYLIAVLTVLGLAVAYLL 130

Query: 103 QSPPLIFGL-IVWFLLGTAYSVDLPFLRWKTK----PFLAGMCMVTVFGLVYQFSFFIHF 157
              P +F   ++   L   YS   P LR K       +  G+    +       +F    
Sbjct: 131 G--PWVFLAALLGLFLAWIYSA--PPLRLKQNGWLGNYAVGLSYEGLPWWAGAAAF---- 182

Query: 158 QKYVLGRPVVITRPLIFAAAIISTISA--VMSLLKDIPDEDGDKQFGFQSISSKLGKENV 215
                    + + P I   A++ ++ A  +M+ L D    +GD+Q G +S+    G++N 
Sbjct: 183 ------GAGLPSWP-IVILALLYSLGAHGIMT-LNDFKSVEGDRQLGLRSLPVVFGEKNA 234

Query: 216 LRLCV 220
            R+  
Sbjct: 235 ARIAC 239

Length = 314

>gnl|CDD|183811 PRK12882, ubiA, prenyltransferase; Reviewed

 Score = 52.3 bits (126), Expect = 8e-08
 Identities = 49/196 (25%), Positives = 86/196 (43%), Gaps = 18/196 (9%)

Query: 55  TVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLI-- 112
            +N   D EID++N+PD P+ SG +S    LA ++ L    +A+A  L    L   L   
Sbjct: 56  AINDYFDREIDRINRPDRPIPSGAVSPRGALAFSILLFAAGVALAFLLPPLCLAIALFNS 115

Query: 113 VWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPL 172
           +  +L        P L   +  +L G             S F+ F    +G   ++   +
Sbjct: 116 LLLVLYAETLKGTPGLGNASVAYLTG-------------STFL-FGGAAVGTEGLLALLV 161

Query: 173 IFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVI 232
           +FA A ++T++    ++KD+ D +GD+  G +++   +G    L +    L  A   S +
Sbjct: 162 LFALAALATLA--REIIKDVEDIEGDRAEGARTLPILIGVRKALYVAAAFLLVAVAASPL 219

Query: 233 VGASSSFQLVKLVSII 248
               S+F L  LV + 
Sbjct: 220 PYLLSTFGLWYLVLVA 235

Length = 276

>gnl|CDD|181963 PRK09573, PRK09573, (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

 Score = 46.1 bits (110), Expect = 7e-06
 Identities = 39/177 (22%), Positives = 75/177 (42%), Gaps = 16/177 (9%)

Query: 56  VNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWF 115
           +N + D+EIDK+NKP+ P+ SG +S+      ++TL +  L +++ +     +  L+   
Sbjct: 56  INDIYDIEIDKINKPERPIPSGRISLKEAKIFSITLFIVGLILSIFINIYAFLIALLNSI 115

Query: 116 LLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFA 175
           LL   Y+ DL     K    +  + +  + GL + F     F    +    +      ++
Sbjct: 116 LL-YLYAKDL-----KKTGLIGNLIVAYLTGLSFIFGGLAVFNVLRIIILFLCAFFSTWS 169

Query: 176 AAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVI 232
             I+          KDI D +GD +    ++  K G +    +    L  A  +S +
Sbjct: 170 REIV----------KDIEDIEGDLKENVITLPIKYGIKKSWYIAKILLILAIVLSPL 216

Length = 279

>gnl|CDD|171796 PRK12883, ubiA, prenyltransferase UbiA-like protein; Reviewed

 Score = 45.9 bits (109), Expect = 8e-06
 Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 10/81 (12%)

Query: 55  TVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVW 114
           T+N   D EIDK+N+P+ PL  G +S    L  +L L    LA+A  +     +F L  +
Sbjct: 55  TINDYFDYEIDKINRPNRPLPRGAMSRKAALYYSLLLFAVGLALAYLINIEAFLFALGAY 114

Query: 115 FLLGTAYSVDLPFL-RWKTKP 134
            L+         FL  WK KP
Sbjct: 115 VLM---------FLYAWKLKP 126

Length = 277

>gnl|CDD|183812 PRK12884, ubiA, prenyltransferase; Reviewed

 Score = 45.7 bits (109), Expect = 9e-06
 Identities = 45/218 (20%), Positives = 92/218 (42%), Gaps = 18/218 (8%)

Query: 34  KYFMEFLKALL---SAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLT 90
              +   +ALL   +A   +     +N   D E+D++N+PD P+ SG +S    L + + 
Sbjct: 31  LGGLPLDEALLGFLTAFFASGSANALNDYFDYEVDRINRPDRPIPSGRISRREALLLAIL 90

Query: 91  LSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQ 150
           L +  L  A  +     +  ++V  +LG  Y+  L     K    +  + +  + G+ + 
Sbjct: 91  LFILGLIAAYLISPLAFLVVILVS-VLGILYNWKL-----KEYGLIGNLYVAFLTGMTFI 144

Query: 151 FSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKL 210
           F          +G        L+ A A + T+     ++KDI D +GD+  G ++++   
Sbjct: 145 FG------GIAVGELNEAVI-LLAAMAFLMTLGR--EIMKDIEDVEGDRLRGARTLAILY 195

Query: 211 GKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSII 248
           G++   R+       A  +S +      F ++ L  ++
Sbjct: 196 GEKIAGRIAAALFILAVLLSPLPYLFGIFNILYLAPVL 233

Length = 279

>gnl|CDD|237241 PRK12872, ubiA, prenyltransferase; Reviewed

 Score = 42.2 bits (100), Expect = 1e-04
 Identities = 45/207 (21%), Positives = 84/207 (40%), Gaps = 8/207 (3%)

Query: 43  LLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSL 102
           LL   L+   V  +N + D+E D +NKP+  + S   + G  L + +        +   +
Sbjct: 42  LLITFLIAAAVYIINYLTDLEEDIINKPERVVFSETKAYGLFLLLNVLGLYLGAYLLAVI 101

Query: 103 QSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVL 162
             P      I+  +LG  YSV     R K  P    + +  ++ L        ++Q    
Sbjct: 102 GGPKFALIFIIPLILGILYSVFF-KRRLKRIPLFKNLVVSLLWALSPLILGVYYYQLT-- 158

Query: 163 GRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYA 222
                I   L+  A  I   S +  ++ DI D +GD++ G +++   LGKE  L+  +  
Sbjct: 159 -----IFSLLLLYAVFIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGKERTLKFLLIL 213

Query: 223 LFFAYGVSVIVGASSSFQLVKLVSIIG 249
                 + ++   +    L+ LV ++ 
Sbjct: 214 NLLFLILLILGVYTGLLPLLLLVLLLL 240

Length = 285

>gnl|CDD|237058 PRK12324, PRK12324, phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 3/69 (4%)

Query: 56  VNQVADVEIDKV--NKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIV 113
           VN + DVE D++   K + P+ASG +S+     + + L + SLA+A  L SP L   L+V
Sbjct: 65  VNDIRDVEADRLHPTKRNRPIASGVVSVSLAYILAVVLLVASLALAY-LLSPKLALVLLV 123

Query: 114 WFLLGTAYS 122
           + +L  AYS
Sbjct: 124 YLVLNLAYS 132

Length = 295

>gnl|CDD|131111 TIGR02056, ChlG, chlorophyll synthase, ChlG

 Score = 41.5 bits (97), Expect = 3e-04
 Identities = 44/186 (23%), Positives = 80/186 (43%), Gaps = 14/186 (7%)

Query: 43  LLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSL 102
           LLS   +  Y  T+N   D +ID +N+P  P+ SG +S    +   + L +  +AIA  L
Sbjct: 60  LLSGPCLTGYTQTINDFYDRDIDAINEPYRPIPSGAISEPEVITQIVLLFIAGIAIAFIL 119

Query: 103 -----QSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHF 157
                   P +F L ++     A+    P L+ K   +L    +   +  +  ++    F
Sbjct: 120 DLWAGHEFPNVFVLALFGSF-IAFIYSAPPLKLKQNGWLGNFALGASYIALPWWAGHALF 178

Query: 158 QKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLR 217
            +     P +    LI++ A +      ++++ D    +GD+  G QS+    G E    
Sbjct: 179 GEL---NPDIAVLTLIYSIAGLG-----IAIVNDFKSVEGDRALGLQSLPVAFGIETAAW 230

Query: 218 LCVYAL 223
           +CV A+
Sbjct: 231 ICVGAI 236

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP) [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 306

>gnl|CDD|236195 PRK08238, PRK08238, hypothetical protein; Validated

 Score = 40.6 bits (96), Expect = 7e-04
 Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 73  PLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYS 122
           P ASG L +  GLA    L L  LA+AL+L  P  +  L+ +  L  AYS
Sbjct: 264 PFASGALPIPFGLAAAPLLLLAGLALALAL-GPAFLLVLLAYLALTLAYS 312

Length = 479

>gnl|CDD|215028 PLN00012, PLN00012, chlorophyll synthetase; Provisional

 Score = 39.1 bits (91), Expect = 0.002
 Identities = 53/209 (25%), Positives = 81/209 (38%), Gaps = 60/209 (28%)

Query: 43  LLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSM-------------GTGLAITL 89
           L+S   +  Y  T+N   D EID +N+P  P+ SG +S              G GLA TL
Sbjct: 129 LMSGPFLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLGGLGLAYTL 188

Query: 90  -------TLSLTSLAIALSLQS-----PPLIF---GLIVWFLLGTAYSVDLPFLRWKTKP 134
                     +  LA+  SL S     PPL     G I  + LG +Y + LP+  W    
Sbjct: 189 DVWAGHDFPIVFYLALGGSLLSYIYSAPPLKLKQNGWIGNYALGASY-ISLPW--W---- 241

Query: 135 FLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPD 194
             AG     +FG                     +T  ++    + S     ++++ D   
Sbjct: 242 --AGQ---ALFG--------------------TLTPDVVVLTLLYSIAGLGIAIVNDFKS 276

Query: 195 EDGDKQFGFQSISSKLGKENVLRLCVYAL 223
            +GD+  G QS+    G E    +CV ++
Sbjct: 277 IEGDRALGLQSLPVAFGVETAKWICVGSI 305

Length = 375

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	294
PLN02878	280	homogentisate phytyltransferase	100.0
PRK12887	308	ubiA tocopherol phytyltransferase; Reviewed	100.0
PRK12895	286	ubiA prenyltransferase; Reviewed	100.0
PLN02809	289	4-hydroxybenzoate nonaprenyltransferase	100.0
PRK12888	284	ubiA prenyltransferase; Reviewed	100.0
PRK13106	300	ubiA prenyltransferase; Reviewed	100.0
PRK12870	290	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	100.0
TIGR01475	282	ubiA_other putative 4-hydroxybenzoate polyprenyltr	100.0
PRK12876	300	ubiA prenyltransferase; Reviewed	100.0
PRK12873	294	ubiA prenyltransferase; Reviewed	100.0
COG0382	289	UbiA 4-hydroxybenzoate polyprenyltransferase and r	100.0
TIGR01474	281	ubiA_proteo 4-hydroxybenzoate polyprenyl transfera	100.0
PRK12878	314	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	100.0
PRK12874	291	ubiA prenyltransferase; Reviewed	100.0
PRK12886	291	ubiA prenyltransferase; Reviewed	100.0
PRK12848	282	ubiA 4-hydroxybenzoate octaprenyltransferase; Revi	100.0
PRK12882	276	ubiA prenyltransferase; Reviewed	100.0
PRK09573	279	(S)-2,3-di-O-geranylgeranylglyceryl phosphate synt	100.0
PRK12847	285	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	100.0
PRK12392	331	bacteriochlorophyll c synthase; Provisional	100.0
TIGR01476	283	chlor_syn_BchG bacteriochlorophyll/chlorophyll syn	100.0
PRK12884	279	ubiA prenyltransferase; Reviewed	100.0
PRK07566	314	bacteriochlorophyll/chlorophyll a synthase; Review	100.0
KOG1381	353	consensus Para-hydroxybenzoate-polyprenyl transfer	100.0
PRK04375	296	protoheme IX farnesyltransferase; Provisional	100.0
PRK12869	279	ubiA protoheme IX farnesyltransferase; Reviewed	100.0
PRK05951	296	ubiA prenyltransferase; Reviewed	100.0
PRK13595	292	ubiA prenyltransferase; Provisional	100.0
PLN00012	375	chlorophyll synthetase; Provisional	100.0
TIGR02056	306	ChlG chlorophyll synthase, ChlG. This model repres	100.0
TIGR01473	280	cyoE_ctaB protoheme IX farnesyltransferase. This m	100.0
PRK06080	293	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	100.0
PRK12883	277	ubiA prenyltransferase UbiA-like protein; Reviewed	100.0
PRK13387	317	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	100.0
PRK12871	297	ubiA prenyltransferase; Reviewed	100.0
PRK13362	306	protoheme IX farnesyltransferase; Provisional	99.98
TIGR00751	284	menA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	99.97
PLN02922	315	prenyltransferase	99.97
PRK07419	304	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.97
PRK13105	282	ubiA prenyltransferase; Reviewed	99.97
TIGR02235	285	menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytylt	99.96
COG1575	303	MenA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	99.96
PLN02776	341	prenyltransferase	99.96
PF01040	257	UbiA: UbiA prenyltransferase family; InterPro: IPR	99.96
PRK12872	285	ubiA prenyltransferase; Reviewed	99.95
PRK12875	282	ubiA prenyltransferase; Reviewed	99.95
PRK13591	307	ubiA prenyltransferase; Provisional	99.95
PRK13592	299	ubiA prenyltransferase; Provisional	99.94
COG0109	304	CyoE Polyprenyltransferase (cytochrome oxidase ass	99.9
PRK12324	295	phosphoribose diphosphate:decaprenyl-phosphate pho	99.84
PRK08238	479	hypothetical protein; Validated	99.81
KOG4581	359	consensus Predicted membrane protein [Function unk	99.24
KOG1380	409	consensus Heme A farnesyltransferase [Coenzyme tra	99.23
COG1575	303	MenA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	94.04
PRK13591	307	ubiA prenyltransferase; Provisional	94.04
PRK12875	282	ubiA prenyltransferase; Reviewed	93.49
PRK13105	282	ubiA prenyltransferase; Reviewed	93.03
PRK12872	285	ubiA prenyltransferase; Reviewed	92.64
TIGR02235	285	menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytylt	89.86
PRK13387	317	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	89.33
PRK07419	304	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	88.99
TIGR01474	281	ubiA_proteo 4-hydroxybenzoate polyprenyl transfera	88.89
PLN02922	315	prenyltransferase	88.87
PRK13592	299	ubiA prenyltransferase; Provisional	88.25
COG0382	289	UbiA 4-hydroxybenzoate polyprenyltransferase and r	88.01
TIGR01475	282	ubiA_other putative 4-hydroxybenzoate polyprenyltr	88.0
PRK12847	285	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	87.89
PRK12884	279	ubiA prenyltransferase; Reviewed	87.78
PLN00012	375	chlorophyll synthetase; Provisional	87.6
PRK07566	314	bacteriochlorophyll/chlorophyll a synthase; Review	87.52
TIGR00751	284	menA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	87.35
PRK12871	297	ubiA prenyltransferase; Reviewed	87.19
PRK12888	284	ubiA prenyltransferase; Reviewed	87.0
PRK12886	291	ubiA prenyltransferase; Reviewed	86.79
PRK13106	300	ubiA prenyltransferase; Reviewed	86.48
PRK12882	276	ubiA prenyltransferase; Reviewed	85.67
PRK09573	279	(S)-2,3-di-O-geranylgeranylglyceryl phosphate synt	84.85
PRK06080	293	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	84.52
PRK12392	331	bacteriochlorophyll c synthase; Provisional	84.45
TIGR02056	306	ChlG chlorophyll synthase, ChlG. This model repres	84.2
PRK13595	292	ubiA prenyltransferase; Provisional	82.87
TIGR01476	283	chlor_syn_BchG bacteriochlorophyll/chlorophyll syn	82.78
PRK12848	282	ubiA 4-hydroxybenzoate octaprenyltransferase; Revi	82.09
PLN02809	289	4-hydroxybenzoate nonaprenyltransferase	82.08
PRK12883	277	ubiA prenyltransferase UbiA-like protein; Reviewed	81.51
PRK12876	300	ubiA prenyltransferase; Reviewed	80.53
PF01040	257	UbiA: UbiA prenyltransferase family; InterPro: IPR	80.52

>PLN02878 homogentisate phytyltransferase

Probab=100.00  E-value=1.7e-56  Score=396.19  Aligned_cols=279  Identities=51%  Similarity=0.904  Sum_probs=249.6

Q ss_pred             HHHHHhHhhccccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcCCCCCccCCccCHHHHHHHHHHHHHHH
Q 022622           16 GITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTS   95 (294)
Q Consensus        16 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~~~~l~   95 (294)
                      ++.+..++|.+...|.++.++.+++..++++++++.+...+||++|+|+||+|||+||+|||++|+++++.....+.++|
T Consensus         2 ~~~~~~l~a~~~~~~~~~~~~~~~l~~~~~~l~~niyivglNd~~D~EIDkINkP~rPIpSG~iS~~~a~~~~~~~~~lg   81 (280)
T PLN02878          2 GITSVSLLAVESLSDFSPLFFTGLLEALVPALLMNIYIVGLNQLYDIEIDKVNKPYLPLASGEFSVATGVAIVTSFAIMS   81 (280)
T ss_pred             chhHHhHHHhhccccccHHHHHHHHHHHHHHHhhhhheechhhhhhhcccccCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence            34455677877777788778889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhchHHHHHHHHHHHHHHhHhcCCCCccccccccccchhHHHHhhhhhhhhHHHHHHHHHhhcCCccCcHHHHHH
Q 022622           96 LAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFA  175 (294)
Q Consensus        96 l~l~~~l~~~~~~~~~~~~~~~~~~Ys~~~pp~r~Kr~~~~~~~~v~~~~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~  175 (294)
                      +.+++.+|++++..++..++++++.||..+||+|+||++++...|++.+.+...++|+|.++.+.++|++..++++.++.
T Consensus        82 ~~la~~~g~~~l~~al~~~~~lg~~YS~~lp~lr~k~~~~~aa~~i~~vr~~~v~l~~~~h~~~~~~g~~~~~~~~~~~~  161 (280)
T PLN02878         82 FGMGWIVGSWPLFWALFVSFVLGTAYSINLPLLRWKRSAVAAASCILAVRAVVVQLAFFLHMQTHVLGRPAVFTRPLIFA  161 (280)
T ss_pred             HHHHHHHChHHHHHHHHHHHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHhCCccccchhHHHH
Confidence            99999999887777766777899999987899999999999888877777788889988887778888655555566655


Q ss_pred             HHHHHHHHHHHHHHccCCChhhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 022622          176 AAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAF  255 (294)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  255 (294)
                      ..++.++..+++++||++|+||||+.|+||+|+++|+|++.+++..++.++|+..+..+......+.+.....||.+++.
T Consensus       162 ~~f~~~f~~~i~i~KDi~DieGD~~~Gi~Tlpv~lG~~~~~~i~~~ll~~aY~~~i~~g~~~~~~~~~~~~~~~h~~l~~  241 (280)
T PLN02878        162 TAFMCFFSVVIALFKDIPDVEGDRIFGIRSFSVRLGQKRVFWLCVNLLEMAYAAAILVGASSSFLWSKIITVLGHGILAS  241 (280)
T ss_pred             HHHHHHHHHHHHHHhhCcCchhHHHCCCceechhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            55777788899999999999999999999999999999999999999999999888888887777777788999999999


Q ss_pred             HHHHHHhhccCCChhhHHHHHHHHHHHHHHHHHhhhhcC
Q 022622          256 LLWLRAQTVDLSNNASTYSFYMFIWKLFYAEYLLIHFLR  294 (294)
Q Consensus       256 ~l~~~~~~~d~~~~~~~~~f~~~i~~~~~~~y~~~~~~~  294 (294)
                      .+++|.+.+|.+++++..+||++|||+||+||+++|++|
T Consensus       242 ~L~~rs~~vD~~sk~~i~~fY~fiwklfy~ey~l~p~~~  280 (280)
T PLN02878        242 ILWQRAQSVDLSSKAAITSFYMFIWKLFYAEYFLIPLVR  280 (280)
T ss_pred             HHHHHhHhcCcccHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999987

>PRK12887 ubiA tocopherol phytyltransferase; Reviewed

Probab=100.00  E-value=3.2e-53  Score=387.23  Aligned_cols=287  Identities=32%  Similarity=0.557  Sum_probs=230.9

Q ss_pred             ccccchHHH-HHHHHHHHhHhhccccCCCC-hHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcCCCCCccCCccCH
Q 022622            4 FFLFPNSMY-QIVGITSIAILPLQSFADLT-PKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSM   81 (294)
Q Consensus         4 ~~~Rp~~~~-~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~l~~~l~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~is~   81 (294)
                      |++||||.. +.++++++.++|.+...+.. ...+...+..++.+.+.+.+.+.+||++|+|+||+|||+||++||++|+
T Consensus        18 ~l~Rp~t~igt~l~~~~~~l~a~~~~~~~~~~~~~~~~l~~~~~~~~~nv~i~~iNd~~D~~iD~inkp~rPiasG~ls~   97 (308)
T PRK12887         18 KFSRPHTIIGTSLSVLGLYLIAIAASSNTIALANLGLLLGAWIACLCGNVYIVGLNQLTDIEIDRINKPHLPLAAGEFSR   97 (308)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhcCCCCCCcCCcccCH
Confidence            789999999 99999888877754333221 1123333334444444444444499999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCccccccccccchhHHHHhhhhhhhhHHHHHHHHHh
Q 022622           82 GTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYV  161 (294)
Q Consensus        82 ~~a~~~~~~~~~l~l~l~~~l~~~~~~~~~~~~~~~~~~Ys~~~pp~r~Kr~~~~~~~~v~~~~g~~~~~g~~~~~~~~~  161 (294)
                      ++++....++.++++.+++..|+..+.+++ ++.+++++||.  ||.|+||+|.+++.++..+.|.+..+|.+...... 
T Consensus        98 ~~a~~~~~~~~~lal~la~~~~~~~~~~~~-~~~~lg~~Ys~--pP~rlKr~~~~~~~~i~~~~g~i~~~g~~~~~~~~-  173 (308)
T PRK12887         98 RQGQRIVIITGILALILAALLGPWLLITVG-ISLLIGTAYSL--PPIRLKRFPLLAALCIFTVRGVIVNLGLFLHFQWL-  173 (308)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHcC--CchhhcccchhHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            999999999999999999999988777664 68889999995  99999999998887766666777677765432211 


Q ss_pred             hcCCccCcHHHHHHHHHHHHHHHHHHHHccCCChhhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 022622          162 LGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQL  241 (294)
Q Consensus       162 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~  241 (294)
                      .+++...++..++..++..+++.+++++||++|+||||+.|+||+|+++|+|++.+++..+..++|+..+..+......+
T Consensus       174 ~~~~~~~~~~~~l~~~~~~~~~~~~~l~~di~D~egD~~~Gi~Tlav~lG~~~a~~l~~~ll~~~y~~~i~~~~~~~~~~  253 (308)
T PRK12887        174 LGGSVLIPPTVWLLTLFVLVFTFAIAIFKDIPDMEGDRQYQITTFTLRLGKQAVFKLSCWVLTACYLGMIAVGLLSLPTV  253 (308)
T ss_pred             HhccccCcHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcchhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence            22222344555566667778999999999999999999999999999999999999999999999988877766555544


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHHHhhhhcC
Q 022622          242 VKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKLFYAEYLLIHFLR  294 (294)
Q Consensus       242 ~~~~~~~~~~i~~~~l~~~~~~~d~~~~~~~~~f~~~i~~~~~~~y~~~~~~~  294 (294)
                      ....+.++|.+++.++++|.+.+|.+|+++..+|||+|||+||+||+++|++|
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~iw~l~~~ey~~~~~~~  306 (308)
T PRK12887        254 NPAFLIVSHLILLALLWWRSQRVDLQDKQAIAQFYQFIWKLFFLEYLLFPIAC  306 (308)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            43455589999999999999999999999999999999999999999999987

>PRK12895 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=4.2e-40  Score=296.97  Aligned_cols=258  Identities=16%  Similarity=0.120  Sum_probs=193.2

Q ss_pred             cccccchHHH-HHHHHHHHhHhhccccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcC--CCCCccCCcc
Q 022622            3 QFFLFPNSMY-QIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK--PDLPLASGDL   79 (294)
Q Consensus         3 ~~~~Rp~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~~Nd~~D~~~D~~n~--~~Rpl~sG~i   79 (294)
                      .|+.||+-.. +......|..+|.+..+  ++.   .+++..++.+++++++|++||+.|+|+|++|+  ++||+|+|++
T Consensus         7 ~el~k~~~t~~al~~a~~g~~lA~~~~~--~~~---~l~l~~~~~~~~rsag~~~Ndi~Dr~iD~~~~RT~~RPLpsG~i   81 (286)
T PRK12895          7 VDYIKLEHTVFDLPFILAGYVIAAGHYI--HPI---KILLILIAAVSARTSAMSINRIEGLRYDMINPRKKDWALVSGRI   81 (286)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHhcCCCC--CHH---HHHHHHHHHHHHHHHHHHHHhHHHhcccCCCCcCCCCCCCCCCC
Confidence            3788995555 54444556777754322  221   23445678899999999999999999999996  4999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCccccccccccchhHHHHhhhhhhhhHHHHHHHH
Q 022622           80 SMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQK  159 (294)
Q Consensus        80 s~~~a~~~~~~~~~l~l~l~~~l~~~~~~~~~~~~~~~~~~Ys~~~pp~r~Kr~~~~~~~~v~~~~g~~~~~g~~~~~~~  159 (294)
                      |++||+.+...+.++++.++.++|+.++.++. .+..+...|++      +||+++++|. ++|   ...+++. .+++.
T Consensus        82 s~~~A~~~~~~~~~~~~~~~~~ln~l~~~l~~-~~~~l~~~yp~------~KR~t~~~~~-~lG---~~~g~~~-l~g~~  149 (286)
T PRK12895         82 KMREAIAFTIIFIAIFEICTFLLNRLVFILSP-IVIFLFIIDPF------LKRYTAWRHI-YMG---SIIGLGV-LAGYL  149 (286)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHH------HHhCccccHH-HHH---HHHHhHH-HHHHH
Confidence            99999999999999999999999999888775 45666677775      7999999985 443   3333332 22333


Q ss_pred             HhhcCCccCcHHHHHHHHHHHHHHHHHHHHccCCChhhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 022622          160 YVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSF  239 (294)
Q Consensus       160 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~a~~l~~~~~~~~~~~~~~~~~~~~~  239 (294)
                      ++.| ..+++...+.+.+...+|+.++|++|++||+|+|+|.|+||+|+++|+|++.++...+++++.......+...+ 
T Consensus       150 Av~g-~~~~~~~~~~l~~~~~~W~~g~D~iYa~qD~e~D~~~Gv~S~a~~fG~~~~~~i~~~~~~~~~~~~~~~g~~~~-  227 (286)
T PRK12895        150 AVIP-AFPYNLLIYIIFISSSLWIAGFDIIYVIPDIEYDKINGLKTIMNTYGIKNGLYISDIFHISSLILFWISGIYIR-  227 (286)
T ss_pred             HHcC-CCCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHcCCCchHHHHCCccHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence            4444 32222233344556678999999999999999999999999999999999988877777777666666665554 


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhccCCChhhH-HHHHH-HHHHH
Q 022622          240 QLVKLVSIIGHSTLAFLLWLRAQTVDLSNNAST-YSFYM-FIWKL  282 (294)
Q Consensus       240 ~~~~~~~~~~~~i~~~~l~~~~~~~d~~~~~~~-~~f~~-~i~~~  282 (294)
                      ++   .+..+..+.+.++.+|++.+|++|+++| .+||+ |.|.+
T Consensus       228 ~~---~y~~~~~~~~~~l~~q~~~~~~~~~~~~~~~~F~~N~~ig  269 (286)
T PRK12895        228 TL---WYLAALIIIYTLVIYQHLIIDPRNPINKRMSFFNANSFIG  269 (286)
T ss_pred             hH---HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHcCHHH
Confidence            33   4567888888999999999999999988 66554 54444

>PLN02809 4-hydroxybenzoate nonaprenyltransferase

Probab=100.00  E-value=3.1e-38  Score=285.99  Aligned_cols=254  Identities=21%  Similarity=0.147  Sum_probs=192.8

Q ss_pred             cccccchHHH-HHHHHHHHhHhhccccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcC--CCCCccCCcc
Q 022622            3 QFFLFPNSMY-QIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK--PDLPLASGDL   79 (294)
Q Consensus         3 ~~~~Rp~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~~Nd~~D~~~D~~n~--~~Rpl~sG~i   79 (294)
                      .|+.||.... ..+|+..|..++.......++.   .++++.++.+++++++|++||++|+|+|++|+  |+||+|+|++
T Consensus        13 ~Rl~kp~~~~l~~~p~~~~~~l~a~~~~~~~~~---~l~l~~~g~~~~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL~sG~i   89 (289)
T PLN02809         13 ARLDKPIGTWLLAWPCMWSIALAAPPGSLPDLK---MLALFGCGALLLRGAGCTINDLLDRDIDKKVERTKLRPIASGAL   89 (289)
T ss_pred             HHhhhHHHHHHHHHHHHHHHHHHhccCCCCcHH---HHHHHHHHHHHHHHHHHHHHhhHHhccccCCCCCCCCCCCCCCC
Confidence            3778888888 8888877676664211112221   24567899999999999999999999999875  4999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCccccccccccchhHHHHhhhhhhhhHHHHHHHH
Q 022622           80 SMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQK  159 (294)
Q Consensus        80 s~~~a~~~~~~~~~l~l~l~~~l~~~~~~~~~~~~~~~~~~Ys~~~pp~r~Kr~~~~~~~~v~~~~g~~~~~g~~~~~~~  159 (294)
                      |++|++.+..++.++++.+.+.+|+.++.+++ .+.+....||.      +||++.++|. +.|   ...+++.. +++.
T Consensus        90 s~~~A~~~~~~~~~~~~~~~~~l~~~~~~l~~-~~~~~~~~Y~~------~KR~t~~~~~-~lg---~~~~~~~l-~g~~  157 (289)
T PLN02809         90 TPFQGVGFLGAQLLLGLGILLQLNNYSRILGA-SSLLLVFTYPL------MKRFTFWPQA-FLG---LTFNWGAL-LGWA  157 (289)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHhH------HHhcCcchHH-HHH---HHHHHHHH-HHHH
Confidence            99999999999999999999888988887775 56777889995      8999999885 443   33333332 2233


Q ss_pred             HhhcCCccCcHHHH-HHHHHHHHHHHHHHHHccCCChhhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 022622          160 YVLGRPVVITRPLI-FAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSS  238 (294)
Q Consensus       160 ~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~a~~l~~~~~~~~~~~~~~~~~~~~  238 (294)
                      .+.|. .  +...+ .++....+|+.++|+++++||+|||+|.|+||+|+++|+|+..+++. +...++..+...+...+
T Consensus       158 av~g~-~--~~~~~~~l~~~~~~W~~~~d~~ya~~D~e~D~~~Gi~sl~v~~G~~~~~~i~~-~~~~~~~~l~~~g~~~~  233 (289)
T PLN02809        158 AVKGS-L--DPAVVLPLYASGVCWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDDTKLWLTG-FGAASIGGLALSGYNAG  233 (289)
T ss_pred             HHhCC-C--ChHHHHHHHHHHHHHHHHHHHHHHHhchhhHHhCCCcccchhhcHHHHHHHHH-HHHHHHHHHHHHHHHhc
Confidence            44442 2  22222 24555667999999999999999999999999999999997666664 55556666666677666


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhccCCChhhHHHHHHH
Q 022622          239 FQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMF  278 (294)
Q Consensus       239 ~~~~~~~~~~~~~i~~~~l~~~~~~~d~~~~~~~~~f~~~  278 (294)
                      .++   .+..++.+.+.++.+|++.+|++|+++|.+.|+.
T Consensus       234 ~~~---~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~F~~  270 (289)
T PLN02809        234 LGW---PYYAGLAAAAGHLAWQIQTVDLSSRADCNRKFVS  270 (289)
T ss_pred             CcH---HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence            665   4446777888899999999999999987666654

>PRK12888 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=4.1e-38  Score=284.85  Aligned_cols=257  Identities=16%  Similarity=0.130  Sum_probs=190.2

Q ss_pred             cccccchH-HHHHHHHHHHhHhhcc-ccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcC--CCCCccCCc
Q 022622            3 QFFLFPNS-MYQIVGITSIAILPLQ-SFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK--PDLPLASGD   78 (294)
Q Consensus         3 ~~~~Rp~~-~~~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~l~~~l~~~a~~~~Nd~~D~~~D~~n~--~~Rpl~sG~   78 (294)
                      .|+.||+. +++......++..|.. ..+.+++.   .++++.++.+++|+++|++||++|+|+|++|+  |+||+|+|+
T Consensus         6 ~~l~r~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---~~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL~sG~   82 (284)
T PRK12888          6 LRLVAIEHSVFALPFAYIAALTAMFASDGSVHWA---DLLLVTVAMVGARTFAMAANRIIDREIDARNPRTAGRELVTGA   82 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHHHHHHHHHHHhHHhhCCCCCCCCCCCCCCCCCC
Confidence            37789944 4433333333444431 11223322   24567899999999999999999999999998  599999999


Q ss_pred             cCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCccccccccccchhHHHHhhhhhhhhHHHHHHH
Q 022622           79 LSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQ  158 (294)
Q Consensus        79 is~~~a~~~~~~~~~l~l~l~~~l~~~~~~~~~~~~~~~~~~Ys~~~pp~r~Kr~~~~~~~~v~~~~g~~~~~g~~~~~~  158 (294)
                      +|++|++.+...+..+++.++..+|+.++.++. ++++....|++      .||+++++|. +++.   ..+++.. +++
T Consensus        83 is~~~a~~~~~~~~~~~l~l~~~l~~~~~~l~~-~~~~~~~~Y~~------~Kr~t~~~~~-~lg~---~~~~~~l-~g~  150 (284)
T PRK12888         83 VSVRTAWTGALVALAVFLGAAALLNPLCLALAP-LAVAPLVVYPY------AKRFTNFPHA-ILGL---AQAVGPV-GAW  150 (284)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHH------hhcccchhhH-HHHH---HHHHHHH-HHH
Confidence            999999999988888888888888998877775 45667789985      7999999885 4443   2233321 223


Q ss_pred             HHhhcCCccCcHHHHHHHHHHHHHHHHHHHHccCCChhhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 022622          159 KYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSS  238 (294)
Q Consensus       159 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~a~~l~~~~~~~~~~~~~~~~~~~~  238 (294)
                      ..+.| ..  +...+.+.+...+|+.++|++|++||+|+|+|.|+||+|+++|+|++.++...++.+++++....+...+
T Consensus       151 ~a~~g-~~--~~~~~ll~~~~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~~~a~~~~~~~~~~~~~ll~~~~~~~~  227 (284)
T PRK12888        151 IAVTG-TW--SWPAVLLGLAVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGVRAALWASRVAHVVTFALFVWFGLAVG  227 (284)
T ss_pred             HHHcC-CC--CHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCchhHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            33334 22  3444455556678999999999999999999999999999999999988777777777777666677777


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhccCCChhhHH-HHH-HHHH
Q 022622          239 FQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTY-SFY-MFIW  280 (294)
Q Consensus       239 ~~~~~~~~~~~~~i~~~~l~~~~~~~d~~~~~~~~-~f~-~~i~  280 (294)
                      .++   .+..+..+.+.++.||++.+|++|+++|. .|| .|.|
T Consensus       228 ~~~---~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ff~~n~~  268 (284)
T PRK12888        228 FGA---LWWIGLAITAGAFAYEHAIVSPTDLSRVNRAFFTANGF  268 (284)
T ss_pred             CcH---HHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHhhH
Confidence            665   44567777788999999999999977665 766 4543

>PRK13106 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=8.1e-38  Score=284.28  Aligned_cols=257  Identities=17%  Similarity=0.188  Sum_probs=192.5

Q ss_pred             ccccchHHH-HHHHHHHHhHhhccccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcC--CCCCccCCccC
Q 022622            4 FFLFPNSMY-QIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK--PDLPLASGDLS   80 (294)
Q Consensus         4 ~~~Rp~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~~Nd~~D~~~D~~n~--~~Rpl~sG~is   80 (294)
                      |+.||+... ...+...|..+|.+..+  ++   ..++++.++.+++++++|++||++|+|+|++|+  ++||+|+|++|
T Consensus        20 ~L~R~~~~~~~l~~~~~g~~la~~~~~--~~---~~l~l~~lg~~l~~~a~~~~Nd~~D~diD~~~~RT~~RPl~sG~is   94 (300)
T PRK13106         20 RFLRIEQTFFSLPMAYLGAFVAIKGIP--PI---STLILIFLALFFLRTAGMTNDNLADLEIDAKNPRTKNRPLVTGAIK   94 (300)
T ss_pred             HHHccccHHHHHHHHHHHHHHHcCCCC--CH---HHHHHHHHHHHHHHHHHHHHHhhHHhccccCCCccCCCCCCCCCcC
Confidence            789998877 77767777888754333  22   124567889999999999999999999999985  48999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCccccccccccchhHHHHhhhhhhhhHHHHHHHHH
Q 022622           81 MGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKY  160 (294)
Q Consensus        81 ~~~a~~~~~~~~~l~l~l~~~l~~~~~~~~~~~~~~~~~~Ys~~~pp~r~Kr~~~~~~~~v~~~~g~~~~~g~~~~~~~~  160 (294)
                      ++|++.+...+.+.++.++..+|+.+..++. .+.+....||.      .||+++++|.. ++   ...+++.. .++..
T Consensus        95 ~~~A~~~~~~~~~~~~~~~~~ln~~~~~l~~-~~~~~~~~Y~~------~KR~t~~~~~~-lg---~~~~~~~~-~G~~a  162 (300)
T PRK13106         95 ISEAKALITAGLILFFASAYLVNRWALLLSP-IVALIAMSYPY------MKRYTAFANYH-LA---SIQGLAVF-SGAVA  162 (300)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHhH------HhcCCcchHHH-HH---HHHHHHHH-HHHHH
Confidence            9999998877777777778888988877775 45566788985      79999999964 43   33333321 12223


Q ss_pred             hhcCCc-c----CcHHHHHHHHHHHHHHHHHHHHccCCChhhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHHH
Q 022622          161 VLGRPV-V----ITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGA  235 (294)
Q Consensus       161 ~~g~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~a~~l~~~~~~~~~~~~~~~~~  235 (294)
                      +.|... +    .+...+.+.....+|+.++|++|++||+|+|+|.|+||+|+++| |++.++...++..+..+....+.
T Consensus       163 ~~g~~~~~~~~~l~~~~~~l~~~~~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G-~~a~~~~~~~~~~~v~l~~~~~~  241 (300)
T PRK13106        163 VLGLYANSLIQVLLRVPWLFVIGTILWAAGFDLYNHIPDAEFDREMGLHSFAVVLG-KWALTFAGLNQLFSVVLDLLGDL  241 (300)
T ss_pred             HcCCcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHccchhhHHHCCCCccHHHHh-hhHHHHHHHHHHHHHHHHHHHHH
Confidence            334211 0    11222334445567999999999999999999999999999999 88888888888877777777777


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHH
Q 022622          236 SSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKL  282 (294)
Q Consensus       236 ~~~~~~~~~~~~~~~~i~~~~l~~~~~~~d~~~~~~~~~f~~~i~~~  282 (294)
                      ..++++   .|..+..+...++.+|+..++++ +++.+.|..|.|.+
T Consensus       242 ~~~lg~---~y~~~~~~~~~~l~~~~~~~~~~-~~~~~~F~~n~~ig  284 (300)
T PRK13106        242 YYGLGP---IAIAATILHGLIMAYAYYLASKK-GDFGRAFYYNIYSS  284 (300)
T ss_pred             HhCCcH---HHHHHHHHHHHHHHHHHHHhCCc-hHHHHHHHHccHHH
Confidence            777765   45567777788999999999887 66667776664433

>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=100.00  E-value=1.4e-37  Score=282.53  Aligned_cols=254  Identities=16%  Similarity=0.146  Sum_probs=186.4

Q ss_pred             cccchHHH-HHHHHHHHhHhhccccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcC-C-CCCccCCccCH
Q 022622            5 FLFPNSMY-QIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK-P-DLPLASGDLSM   81 (294)
Q Consensus         5 ~~Rp~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~~Nd~~D~~~D~~n~-~-~Rpl~sG~is~   81 (294)
                      ..||.... ..+|+..|..+|.++.++.     ..+++++++.+++++++|++||++|+|+|++|+ + +||+|+|++|+
T Consensus        18 ~~kp~~~~l~~~~~~~g~~lA~~~~~~~-----~~~~l~~lg~~~~~~a~~~~Nd~~D~~iD~~~~Rt~~RPL~sG~is~   92 (290)
T PRK12870         18 WDKPAGRLILMIPALWAVFLAAHGLPPL-----PLVGIIILGALATSAAGCVVNDLWDRDIDPQVERTRFRPLASRRLSV   92 (290)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHccCCCCH-----HHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCcccCCCCCCCCcCH
Confidence            34444455 6678888888885443322     123567889999999999999999999998654 4 89999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCccccccccccchhHHHHhhhhhhhhHHHHHHHHHh
Q 022622           82 GTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYV  161 (294)
Q Consensus        82 ~~a~~~~~~~~~l~l~l~~~l~~~~~~~~~~~~~~~~~~Ys~~~pp~r~Kr~~~~~~~~v~~~~g~~~~~g~~~~~~~~~  161 (294)
                      +|+..+..++.++++.++..+|+.++.+++ .+.+...+||.      .||++.++|. +++.   ..+++. ..++..+
T Consensus        93 ~~a~~~~~~~~~~~~~l~~~l~~~~~~l~~-~~~~~~~~Y~~------~KR~t~~~~~-~lg~---~~~~~~-l~g~~a~  160 (290)
T PRK12870         93 KVGIVIAIVALLCAAGLAFFLNPLSFWLCV-AAVPVIFLYPL------AKRVFPVPQL-VLAI---AWGFAV-LISWSAV  160 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHhhh------hhhcccccee-eehH---HHHhHH-HHHHHHH
Confidence            999999999999999999999998887775 56677889995      7999998885 4432   223332 1222233


Q ss_pred             hcCCccCcHHHHHHHHHHHHHHHHHHHHccCCChhhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 022622          162 LGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQL  241 (294)
Q Consensus       162 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~  241 (294)
                      .| ..  +...+.+.....+|+.++|++|++||+|+|+|+|+||+|+++|+|++.+++. ++.+........++..+.++
T Consensus       161 ~g-~~--~~~~~~l~~~~~lw~~~~d~~~a~~D~e~D~~~G~~slav~~G~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~  236 (290)
T PRK12870        161 TG-HL--DLGTWLLWAATVFWTLGFDTVYAMSDREDDLRIGVNSSAIFFGRYAPEAIGL-FFALTVGFLAILGVLLELHL  236 (290)
T ss_pred             cC-CC--CHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHCCCcchhHHhccccHHHHHH-HHHHHHHHHHHHHHHhCCcH
Confidence            33 22  3444455556678999999999999999999999999999999999887766 34444444445566666654


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhc--cCCChhhHHHHHHH-HHHH
Q 022622          242 VKLVSIIGHSTLAFLLWLRAQTV--DLSNNASTYSFYMF-IWKL  282 (294)
Q Consensus       242 ~~~~~~~~~~i~~~~l~~~~~~~--d~~~~~~~~~f~~~-i~~~  282 (294)
                         .|..+..+...++.+|+..+  |.+|++.|+++|+. .|.+
T Consensus       237 ---~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~F~~n~~~g  277 (290)
T PRK12870        237 ---PFWIGLAIAAVLWARQYRRLRQANLPPLAYGQLFLQNVWIG  277 (290)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHhhHHH
Confidence               34456666778889999988  66678777666664 4444

>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase

Probab=100.00  E-value=3.4e-37  Score=279.44  Aligned_cols=255  Identities=17%  Similarity=0.200  Sum_probs=190.7

Q ss_pred             cccccchHHH-HHHHHHHHhHhhccccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhc--CCCCCccCCcc
Q 022622            3 QFFLFPNSMY-QIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVN--KPDLPLASGDL   79 (294)
Q Consensus         3 ~~~~Rp~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~~Nd~~D~~~D~~n--~~~Rpl~sG~i   79 (294)
                      -|+.||+... ......+|..+|.++.+++  .   ..++++++.+++++++|++||+.|+|+|++|  +|+||+|+|++
T Consensus         6 ~~L~r~~~~~~~~~~~~~g~~la~~~~~~~--~---~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~~Rt~~RPl~sG~i   80 (282)
T TIGR01475         6 LELIKFEHTVFALPFAYAGALLAAKGLPGL--K---TLILILIAAVSARTAAMAFNRIIDRAIDARNPRTKNRPLVSGLI   80 (282)
T ss_pred             HHHHccccHHHHHHHHHHHHHHhcCCCCCH--H---HHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccCCCCCCCCCc
Confidence            3789999888 6666666777775433332  1   2456788999999999999999999999998  46999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCccccccccccchhHHHHhhhhhhhhHHHHHHHH
Q 022622           80 SMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQK  159 (294)
Q Consensus        80 s~~~a~~~~~~~~~l~l~l~~~l~~~~~~~~~~~~~~~~~~Ys~~~pp~r~Kr~~~~~~~~v~~~~g~~~~~g~~~~~~~  159 (294)
                      |+++++.+..++.++++.++..+|+.+..++. .+.+..+.||.      +||++.++|+ +.|.   ..++.. ..++.
T Consensus        81 s~~~a~~~~~~~~~~~~~~~~~l~~~~~~l~~-~~~~~~~~Y~~------~Kr~~~~~~~-~~g~---~~~~~~-~~g~~  148 (282)
T TIGR01475        81 SKKEARTMIILSLALFLSASYFLNPLAFILSP-LVLLVLIIYPY------TKRFTFLCHY-VLGS---TYGLAP-LAGWV  148 (282)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHhh------HhccccccHH-HHHH---HHHHHH-HHHHH
Confidence            99999999988888888888888888776664 45667889995      7999998885 4433   222222 12223


Q ss_pred             HhhcCCccCcHHHHHHHHHHHHHHHHHHHHccCCChhhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 022622          160 YVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSF  239 (294)
Q Consensus       160 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~a~~l~~~~~~~~~~~~~~~~~~~~~  239 (294)
                      .+.| ..+.....+.+.....+|+.+++++||+||+|+|+|.|+||+|+++|+|++.+....+..+++......+...+.
T Consensus       149 a~~g-~~~~~~~~~ll~~~~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~  227 (282)
T TIGR01475       149 AVIG-TISFFLVAWLLGIGVGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFGIKAALKIASLSHVITFILLLLVGFYVGN  227 (282)
T ss_pred             HHhC-CccchHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCchHHHhchHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            3333 222113334445556679999999999999999999999999999999999888877777777777666666665


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhccCCChhhHHH-HHHH
Q 022622          240 QLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYS-FYMF  278 (294)
Q Consensus       240 ~~~~~~~~~~~~i~~~~l~~~~~~~d~~~~~~~~~-f~~~  278 (294)
                      ++   .+..+..+....+.++.+..|.+|+++|++ |+.+
T Consensus       228 g~---~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ff~~  264 (282)
T TIGR01475       228 GY---IALLALILIGLILAYEHYIVDPGDQSKIQRAFFYA  264 (282)
T ss_pred             cH---HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            55   444555566678889999999988887765 5554

A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.

>PRK12876 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=1.9e-36  Score=273.46  Aligned_cols=266  Identities=17%  Similarity=0.188  Sum_probs=187.5

Q ss_pred             hHHH-HHHHHHHHhHhhcc----ccC---CCChHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcCC--CCCccCCc
Q 022622            9 NSMY-QIVGITSIAILPLQ----SFA---DLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKP--DLPLASGD   78 (294)
Q Consensus         9 ~~~~-~~~~~~~~~~~a~~----~~~---~~~~~~~~~~~~~~l~~~l~~~a~~~~Nd~~D~~~D~~n~~--~Rpl~sG~   78 (294)
                      ||++ .+....+ +.+|..    ..+   .++   +..+.+..++.+.+|+++|++||+.|+|+|++|+|  +||+|+|+
T Consensus        15 ht~Falpfa~~~-~~~a~~~~~~~~~~~~~~~---~~~~~~~~~a~~~~Rsag~~~Nd~~DrdiD~~~~RT~~RPLpsG~   90 (300)
T PRK12876         15 YALFSALFLSAS-TVFALSLPEISFSLFSLGG---IKTISLGGSAFFCARTVGIIVNQIIDCAIDKKNPRTSSRVLPAKL   90 (300)
T ss_pred             HHHHHHHHHHHH-HHHHhccccccCCCcCCCC---HHHHHHHHHHHHHHHHHHHHHHhHHHhcccCCCCCCCCCCCCCCC
Confidence            7888 6666644 666641    111   112   23356788999999999999999999999999985  99999999


Q ss_pred             cCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCccccccccccchhHHHHhhhhhhhhHHHHHHH
Q 022622           79 LSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQ  158 (294)
Q Consensus        79 is~~~a~~~~~~~~~l~l~l~~~l~~~~~~~~~~~~~~~~~~Ys~~~pp~r~Kr~~~~~~~~v~~~~g~~~~~g~~~~~~  158 (294)
                      +|++|++.+...+.++++.++..+|+.+..++. ++++...+||.      +||+++++|. ++|.   ..+++. .+++
T Consensus        91 is~~~A~~~~~~~~~~~~~l~~~ln~l~~~l~~-~~~~~~~iY~~------~KR~t~~~~~-vLGl---~~~~~~-l~~~  158 (300)
T PRK12876         91 LSINFSMLLLTLCSFLFLSLCWLLNPLCFSLAV-LSTLLMIIYPY------TKRVTFLCHW-ILGL---VYYLAI-LMNF  158 (300)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHh------HhcCCchhHH-HHHH---HHHHHH-HHHH
Confidence            999999999988888888888899999888885 56777789995      8999999884 4543   223332 1223


Q ss_pred             HHhhcCCccCcH--HHHHHHHHHHHHHHHHHHHccCCChhhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHHHh
Q 022622          159 KYVLGRPVVITR--PLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGAS  236 (294)
Q Consensus       159 ~~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~a~~l~~~~~~~~~~~~~~~~~~  236 (294)
                      .++.|++.++..  ..++......+|+.++|++|++||+|+|||.|+||+|+++|++++.++...++.+....+...+..
T Consensus       159 ~Av~~~~~~~~l~~~~~lw~~~~~~~~~g~DiiYa~qD~e~D~~~Gl~Slpv~fG~~~a~~ia~~~~~l~~~~l~~~g~~  238 (300)
T PRK12876        159 FAIIETPLSFSLFCMASLWGISFGMIIAANDIIYAIQDLEFDRKEGLFSIPARFGEKKAIRIASANLIASAIAYLLIGYF  238 (300)
T ss_pred             HHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHhhHHHcCCccchHHHCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            344443221100  111223344467789999999999999999999999999999998778777777777777777777


Q ss_pred             hhhhHHHHHHHHHHHHHHHH--HHHHHhhccCCChhhHHHHHHH-HHHHH--HHHHHhhhh
Q 022622          237 SSFQLVKLVSIIGHSTLAFL--LWLRAQTVDLSNNASTYSFYMF-IWKLF--YAEYLLIHF  292 (294)
Q Consensus       237 ~~~~~~~~~~~~~~~i~~~~--l~~~~~~~d~~~~~~~~~f~~~-i~~~~--~~~y~~~~~  292 (294)
                      .+.+++  .+..+..+.+..  ..+|.+.+|.++++.|.+||+. .|-+.  ++..+..|.
T Consensus       239 ~~l~~~--~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~F~~N~~ig~~~~~~~~~~~~  297 (300)
T PRK12876        239 VSNKKI--FYLCSLVPLTVILKTIKHYSLIDKKKSTLEQKFFLGNIYLALSFFVNMIGLFL  297 (300)
T ss_pred             hhccHH--HHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHhcCHHHHHHHHHHHHHHc
Confidence            777652  233444333333  3455477777788888887775 44333  344444443

>PRK12873 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=9.3e-37  Score=275.51  Aligned_cols=259  Identities=15%  Similarity=0.100  Sum_probs=192.5

Q ss_pred             ccccchHHH-HHHHHHHHhHhhccccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcCC--CCCccCCccC
Q 022622            4 FFLFPNSMY-QIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKP--DLPLASGDLS   80 (294)
Q Consensus         4 ~~~Rp~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~~Nd~~D~~~D~~n~~--~Rpl~sG~is   80 (294)
                      |..||.... ..+|...|..++.+..+  +.   ...+.++++..++++++|++||+.|+|+|++|+|  +||+|+|++|
T Consensus        15 R~~Kp~~~~ll~~p~~~g~~la~~~~~--~~---~~~~~~~~g~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPl~sG~is   89 (294)
T PRK12873         15 RWNKPTGRLILLIPAGWSLWLTPSAPP--SL---LLLLLIILGGLAVSGAGCIANDLWDRRIDRKVERTKNRPLARGKIS   89 (294)
T ss_pred             CccccchHHHHHHHHHHHHHHccCCCC--CH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcCCCCCCCCCCCC
Confidence            456676666 77788777776643222  21   2245688999999999999999999999998764  9999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHh----chHHHHHHHHHHHHHHhHhcCCCCccccccccccchhHHHHhhhhhhhhHHHHH
Q 022622           81 MGTGLAITLTLSLTSLAIALSL----QSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIH  156 (294)
Q Consensus        81 ~~~a~~~~~~~~~l~l~l~~~l----~~~~~~~~~~~~~~~~~~Ys~~~pp~r~Kr~~~~~~~~v~~~~g~~~~~g~~~~  156 (294)
                      +++|+.+..++..+++.+++.+    |+.+..+++ .+++....||.      +||++.++|+ ++|+.   .+++. .+
T Consensus        90 ~~~A~~~~~~~~~~~~~~~~~l~~~~n~l~~~l~~-~~~~~~~~Y~~------~KR~t~~~~~-vlg~~---~a~~~-l~  157 (294)
T PRK12873         90 LKTAYSLLIVLLLLSLFVVLSLPQPSRNLCLSLAF-LALPPILIYPS------AKRWFAYPQA-ILALC---WGFAV-LI  157 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHH-HHHHHHHHHHH------HHhccccchH-HHHHH---HHhHH-HH
Confidence            9999999999999998887665    566777764 56667889995      7999999884 55432   23332 12


Q ss_pred             HHHHhhcCCccCcHHHHHHHHHHHHHHHHHHHHccCCChhhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHHHh
Q 022622          157 FQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGAS  236 (294)
Q Consensus       157 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~a~~l~~~~~~~~~~~~~~~~~~  236 (294)
                      ++.++.| ..++....++++..+.+|+.++|++|++||+|||+|+|+||+|+++|++ +.+....++.++..++...+..
T Consensus       158 gw~Av~g-~~~~~~~~l~l~~~~~~W~~~~d~iyA~qD~edD~~~Gv~slpv~~G~~-~~~~~~~~~~~~~~ll~~~g~~  235 (294)
T PRK12873        158 PWAAAEG-SLNGGWPLLFCWLATLLWTFGFDTVYAMADRRDDAKIGLNSSALSLGSN-ALKTVQICYFLTSIFLALAAFI  235 (294)
T ss_pred             HHHHHhC-CCchhHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHcCCcccchhcChh-hHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444 2322223333345666899999999999999999999999999999975 4556666777777777777888


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHhhccCCC--hhhH-HHHHHHHHHHHH
Q 022622          237 SSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSN--NAST-YSFYMFIWKLFY  284 (294)
Q Consensus       237 ~~~~~~~~~~~~~~~i~~~~l~~~~~~~d~~~--~~~~-~~f~~~i~~~~~  284 (294)
                      .+.++   .|..+..+.+.++.+|++.+|++|  +++| +.|.+|.|.+..
T Consensus       236 ~~l~~---~y~~~~~~~~~~l~~~~~~~~~~~~~~~~c~~~F~~n~~~G~~  283 (294)
T PRK12873        236 AQVGF---IFWPFWLIASIGMQRDILKLFPEKQSIKTIGNHFSNQVILGSL  283 (294)
T ss_pred             hCCcH---HHHHHHHHHHHHHHHHHHHhCcCcccHHHHHHHHHhccHHHHH
Confidence            87775   455677777888999999999887  3555 666667776654

>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

Probab=100.00  E-value=1.5e-36  Score=276.22  Aligned_cols=264  Identities=22%  Similarity=0.298  Sum_probs=204.9

Q ss_pred             ccccchHHH-HHHHHHHHhHhhccccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcCC--CCCccCCccC
Q 022622            4 FFLFPNSMY-QIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKP--DLPLASGDLS   80 (294)
Q Consensus         4 ~~~Rp~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~~Nd~~D~~~D~~n~~--~Rpl~sG~is   80 (294)
                      |+.||++.. ..++...|...+.+..++     +...++++++.+++++++|++||+.|+|+||+|+|  +||+|||++|
T Consensus        18 r~~r~i~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~l~~~~~~~ag~~iND~~D~eiD~~n~rt~~RPl~sG~vS   92 (289)
T COG0382          18 RLDRPIFNLLLLLPALLGLLLAASGLPS-----LKLLLLAFLAFFLARSAGYVINDLADREIDRINPRTKNRPLPSGRVS   92 (289)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHcCCch-----HHHHHHHHHHHHHHHHHhHHHHHHhhhhccCCCCCccCCCCCCCCCC
Confidence            678888888 888887777777532222     23457789999999999999999999999999998  9999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCccccccccccchhHHHHhhhhhhhhHHHHHHHHH
Q 022622           81 MGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKY  160 (294)
Q Consensus        81 ~~~a~~~~~~~~~l~l~l~~~l~~~~~~~~~~~~~~~~~~Ys~~~pp~r~Kr~~~~~~~~v~~~~g~~~~~g~~~~~~~~  160 (294)
                      +++++.+..++.++++.+++.+|+.++.+.+ .+.++.+.|+.      +||.+.++|.++    |...+++.. .++..
T Consensus        93 ~~~a~~~~~~~~~~~~~~a~~l~~~~~~l~~-~~~~l~~~Y~~------~Kr~~~~~~~~l----g~~~~~~~~-~g~~a  160 (289)
T COG0382          93 VKEALLLAILLLLLGLALALLLNPLAFLLSL-AALVLALAYPF------LKRFTFLPQLVL----GLAFGLGAL-AGAAA  160 (289)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHH------hhcCCchHHHHH----HHHHHHHHH-HHHHH
Confidence            9999999999999999999999998877774 68889999964      899999998643    333333322 22222


Q ss_pred             hhcCCccCcHHHHHHHHHHHHHHHHHHHHccCCChhhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 022622          161 VLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQ  240 (294)
Q Consensus       161 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~a~~l~~~~~~~~~~~~~~~~~~~~~~  240 (294)
                      ..| .  .+...+++.++..+|+.++|++||+||+|+||+.|+||+|+.+|+|++..++.... .........+...+..
T Consensus       161 ~~~-~--~~~~~~~l~~~~~l~~~~~~~i~~~~D~e~D~~~G~~s~~~~~G~~~a~~l~~~~~-~~~~~~~~~~~~~~~~  236 (289)
T COG0382         161 VGG-S--LPLLAWLLLLAAILWTLGYDIIYAIQDIEGDRKAGLKSLPVLFGIKKALALALLLL-LASALLVLLGLLAGLL  236 (289)
T ss_pred             HhC-c--cchHHHHHHHHHHHHHHHHHHHHhccCccchHhcCCcchHHHhCchhHHHHHHHHH-HHHHHHHHHHHHHhhc
Confidence            323 1  23445566677778999999999999999999999999999999999998887766 3444444445444443


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHHHhh
Q 022622          241 LVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKLFYAEYLLI  290 (294)
Q Consensus       241 ~~~~~~~~~~~i~~~~l~~~~~~~d~~~~~~~~~f~~~i~~~~~~~y~~~  290 (294)
                      .  ..+..+..+.+..+.+|+..+|.+|++.|++++......-...++..
T Consensus       237 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (289)
T COG0382         237 G--LIYLLGLLVAALLLLYQILIVDVRDPPACFALFDVNLLLGLLLFIGL  284 (289)
T ss_pred             h--HHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHhhHHHHHHHHHH
Confidence            2  24566777778889999999998889999998887666555555443

>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial

Probab=100.00  E-value=5e-36  Score=271.46  Aligned_cols=259  Identities=16%  Similarity=0.184  Sum_probs=187.2

Q ss_pred             cccccchHHH-HHHHHHHHhHhhccccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcC--CCCCccCCcc
Q 022622            3 QFFLFPNSMY-QIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK--PDLPLASGDL   79 (294)
Q Consensus         3 ~~~~Rp~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~~Nd~~D~~~D~~n~--~~Rpl~sG~i   79 (294)
                      -|+.||+... ..+|..+|..+|... .+.++.  ...+++.++.+++++++|++|||+|+|+|++|+  |+||+|+|++
T Consensus         8 ~R~~kp~~~~l~~~~~~~g~~la~~~-~~~~~~--~~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~i   84 (281)
T TIGR01474         8 MRADKPIGTLLLLWPCLWSLLLAAQA-GGIPPL--YLLGLFTVGAILMRGAGCVINDIWDRDFDPQVERTKSRPLASGAV   84 (281)
T ss_pred             HccccHHHHHHHHHHHHHHHHHHhcc-cCCCcH--HHHHHHHHHHHHHHHHHHHHHhHhhhcccccCCcccCCCCCCCCc
Confidence            3788998888 888988888888542 122111  123557788899999999999999999999765  4899999999


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCccccccccccchhHHHHhhhhhhhhHHHHHHHH
Q 022622           80 SMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQK  159 (294)
Q Consensus        80 s~~~a~~~~~~~~~l~l~l~~~l~~~~~~~~~~~~~~~~~~Ys~~~pp~r~Kr~~~~~~~~v~~~~g~~~~~g~~~~~~~  159 (294)
                      |++|++.+..++..+++.+++.+|+.+..+++ ++.+..+.||.      .||++.+++. +.+.   ..+++.. .++.
T Consensus        85 s~~~a~~~~~~~~~~~~~l~~~l~~~~~~l~~-~~~~~~~~Y~~------~Kr~~~~~~~-~~g~---~~~~~~~-~g~~  152 (281)
T TIGR01474        85 SVRQAILFLLVQLLVALGVLLQLNPLTILLGV-ASLALVATYPF------MKRITYWPQL-VLGL---AFGWGAL-MGWA  152 (281)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-HHHHHHHHhch------hcccccccHH-HHHH---HHHHHHH-HHHH
Confidence            99999999999999999998889998887775 67778999995      7999998884 4432   2222221 1222


Q ss_pred             HhhcCCccCcHHHHHHHHHHHHHHHHHHHHccCCChhhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 022622          160 YVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSF  239 (294)
Q Consensus       160 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~a~~l~~~~~~~~~~~~~~~~~~~~~  239 (294)
                      .+.| .  .+...+.+.....+|+.+++++|++||+|+|+|.|+||+|+++|+|++.... .++.+........+...+.
T Consensus       153 a~~g-~--~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~  228 (281)
T TIGR01474       153 AVTG-D--LSTAAWVLYLANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGDNTKPWLG-GLYALMILLLALAGLIAGL  228 (281)
T ss_pred             HHcC-C--CcHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhhhhHHHHH-HHHHHHHHHHHHHHHHhCC
Confidence            3334 2  2333443445566799999999999999999999999999999999864443 3444433334444444455


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhccCCChhhHHHHHHH-HHHHH
Q 022622          240 QLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMF-IWKLF  283 (294)
Q Consensus       240 ~~~~~~~~~~~~i~~~~l~~~~~~~d~~~~~~~~~f~~~-i~~~~  283 (294)
                      ++   .+..+..+.+..+.+++..+|.+|+++|+++|+. .+.+.
T Consensus       229 ~~---~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~~~  270 (281)
T TIGR01474       229 GP---VYYLGLAAAALLLIRQIATLDIRDPENCLKLFKANNYVGL  270 (281)
T ss_pred             cH---HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhHHHH
Confidence            44   4445666667788889888888777766666654 44443

A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.

>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=100.00  E-value=4.5e-36  Score=274.98  Aligned_cols=253  Identities=16%  Similarity=0.158  Sum_probs=186.4

Q ss_pred             ccccchHHH-HHHHHHHHhHhhccccC---CCChHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcC--CCCCccCC
Q 022622            4 FFLFPNSMY-QIVGITSIAILPLQSFA---DLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK--PDLPLASG   77 (294)
Q Consensus         4 ~~~Rp~~~~-~~~~~~~~~~~a~~~~~---~~~~~~~~~~~~~~l~~~l~~~a~~~~Nd~~D~~~D~~n~--~~Rpl~sG   77 (294)
                      |+.||++.. ..+|+.+|.++|.+...   ..++   ...++++++.+++++++|++|||+|+|+|++++  ++||+++|
T Consensus        38 R~~kP~~~~l~~~p~~~G~~lA~~~~~~~~~~~~---~~~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~Rt~~RPl~sG  114 (314)
T PRK12878         38 RWDRPIGWWLLLWPCWWSAALAAGAAADLGLLLL---WHLFLFFVGAIAMRGAGCTYNDIVDRDIDAKVARTRSRPLPSG  114 (314)
T ss_pred             ccccchhhHHHHHHHHHHHHHhcccccCCCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCC
Confidence            566999999 99999999998865311   2332   224567899999999999999999999998766  38999999


Q ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCccccccccccchhHHHHhhhhhhhhHHHHHH
Q 022622           78 DLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHF  157 (294)
Q Consensus        78 ~is~~~a~~~~~~~~~l~l~l~~~l~~~~~~~~~~~~~~~~~~Ys~~~pp~r~Kr~~~~~~~~v~~~~g~~~~~g~~~~~  157 (294)
                      ++|++|+..+..++.++|+.+.+..|+.++.+++ .+.+..+.||.      .||++.+++. +.|   +..+++.. ++
T Consensus       115 ~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~l~~-~~~~~~~~Y~~------~KR~t~~~~~-~~G---l~~~~~~l-~g  182 (314)
T PRK12878        115 QVSRKQAKVFMVLQALVGLAVLLQFNWFAIALGI-ASLAIVAAYPF------MKRITWWPQF-FLG---LAFSWGAL-MG  182 (314)
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHH------HHhcCCcchH-HHH---HHHHHHHH-HH
Confidence            9999999999999999999988888988877775 57778999995      7999888774 333   22333321 12


Q ss_pred             HHHhhcCCccCcHHHHHHHHHHHHHHHHHHHHccCCChhhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 022622          158 QKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASS  237 (294)
Q Consensus       158 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~a~~l~~~~~~~~~~~~~~~~~~~  237 (294)
                      +....| ..  +...+.+......|+.+++.++++||+|+|+|+|+||+|+++|++++.+.... +.+......+.+...
T Consensus       183 ~~a~~g-~~--~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~-~~~~~~~~~l~~~~~  258 (314)
T PRK12878        183 WAAHFG-SL--SLAAVLLYAGSIAWTIGYDTIYAHQDKEDDALIGVKSTARLFGDHTKTWLVLF-YGLAVLLMGLAFWLA  258 (314)
T ss_pred             HHHHhC-CC--chHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHcCCcccchHhchhhHHHHHHH-HHHHHHHHHHHHHHh
Confidence            222333 33  33444444556679999999999999999999999999999999999877743 333333334344444


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhccCCChhhHHHHHHH
Q 022622          238 SFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMF  278 (294)
Q Consensus       238 ~~~~~~~~~~~~~~i~~~~l~~~~~~~d~~~~~~~~~f~~~  278 (294)
                      +.++   .+.++.......+.+|...+|++|++.|+++|+.
T Consensus       259 ~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~F~~  296 (314)
T PRK12878        259 GVPL---LALLGLLAAAAHLAWQIARLDIDDPDQCLRLFKS  296 (314)
T ss_pred             cCcH---HHHHHHHHHHHHHHHHHHHcccCChHHHHHHHHH
Confidence            4454   3334444555668899999888888777777764

>PRK12874 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=4.5e-36  Score=272.44  Aligned_cols=256  Identities=18%  Similarity=0.187  Sum_probs=187.5

Q ss_pred             cccccchHHH-HHHHHHHHhHhhccc---cCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcC--CCCCccC
Q 022622            3 QFFLFPNSMY-QIVGITSIAILPLQS---FADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK--PDLPLAS   76 (294)
Q Consensus         3 ~~~~Rp~~~~-~~~~~~~~~~~a~~~---~~~~~~~~~~~~~~~~l~~~l~~~a~~~~Nd~~D~~~D~~n~--~~Rpl~s   76 (294)
                      .|++||+... +.....+|..+|...   ...+++   ...+++.++.+++++++|++||++|+|+|++|+  |+||+||
T Consensus        12 ~~l~r~~~~~~~l~~a~~g~~la~~~~~~~~~~~~---~~~~l~~l~~~l~~~a~~~~Nd~~DrdiD~~~~RT~~RPl~s   88 (291)
T PRK12874         12 SELVVFKHSIFSLPFIFIAMIVASKQKNDTGWFGF---KLLILGILAAVSARNFAMAFNRLVDRDIDKDNPRTANRPSVD   88 (291)
T ss_pred             HHHHhhccHHHHHHHHHHHHHHHhhhhccCCCCCH---HHHHHHHHHHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCC
Confidence            3789997777 666556666666421   112332   224667889999999999999999999999998  4999999


Q ss_pred             CccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCccccccccccchhHHHHhhhhhhhhHHHHH
Q 022622           77 GDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIH  156 (294)
Q Consensus        77 G~is~~~a~~~~~~~~~l~l~l~~~l~~~~~~~~~~~~~~~~~~Ys~~~pp~r~Kr~~~~~~~~v~~~~g~~~~~g~~~~  156 (294)
                      |++|++|++.+...+.++++.+.+.+|+.+..+++ ..+.....||+      +||++.++|+ +.+..   .+++. ..
T Consensus        89 G~is~~~a~~~~~~~~~~~~~~~~~~n~~~~~l~~-~~~~~~~~Y~~------~KR~t~~~~~-~~g~~---~~~~~-l~  156 (291)
T PRK12874         89 GRISVKSMVLFIVLNALIFIGVSYFINPLAFKLSF-PFLIVLGGYSY------FKRFSSLAHL-VLGLS---LGLAP-IA  156 (291)
T ss_pred             CCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHhh------hcccccccHH-HHHHH---HHHHH-HH
Confidence            99999999999998888888888888998877774 56667889996      7999999885 44432   22221 12


Q ss_pred             HHHHhhcCCccCcHHHHHHHHHHHHHHHHHHHHccCCChhhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHHHh
Q 022622          157 FQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGAS  236 (294)
Q Consensus       157 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~a~~l~~~~~~~~~~~~~~~~~~  236 (294)
                      ++.++.| ..  +...+.+.+.+.+|+.++|++|++||+|+|+++|+||+|+++|++++.+..........+.....+..
T Consensus       157 G~~av~g-~~--~~~~~~l~~~~~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~  233 (291)
T PRK12874        157 GVVAVLG-EI--PLWSVFLALGVMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGEKATLFISRLFHLLAVLFWLLFVWC  233 (291)
T ss_pred             HHHHHcC-CC--cHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCCCcccHHhhhHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            2334433 22  33334445556689999999999999999999999999999999999887665555555444444444


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHhhccCCChhhHHHHHHHH
Q 022622          237 SSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFI  279 (294)
Q Consensus       237 ~~~~~~~~~~~~~~~i~~~~l~~~~~~~d~~~~~~~~~f~~~i  279 (294)
                      .+..+   .+..+..+.+..+.+|++..+.+|++.|+.||.++
T Consensus       234 ~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ff~sn  273 (291)
T PRK12874        234 AHLGL---FAYLGVIVSALILLYEHYLVRKDFKKIDKAFFTLN  273 (291)
T ss_pred             hcchH---HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence            44443   23445556677888999998877777888877653

>PRK12886 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=6.1e-36  Score=271.69  Aligned_cols=257  Identities=18%  Similarity=0.125  Sum_probs=188.1

Q ss_pred             cccccchHHH-HHHHHHHHhHhhccccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcC--CCCCccCCcc
Q 022622            3 QFFLFPNSMY-QIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK--PDLPLASGDL   79 (294)
Q Consensus         3 ~~~~Rp~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~~Nd~~D~~~D~~n~--~~Rpl~sG~i   79 (294)
                      .|+.||+... ...+..+|..+|.++.++.     ..+.++.++.+++++++|++||++|+|+|++|+  ++||+++|++
T Consensus        12 ~~L~r~~~~~~~~~~~~~g~~lA~~~~~~~-----~~l~~~~l~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPL~sG~i   86 (291)
T PRK12886         12 LEMIKFSHTLFALPFAGIGAVLAALGLPGA-----SQLDWILMAMVGARTAAMGFNRLIDAEIDARNPRTAGRAIPAGLI   86 (291)
T ss_pred             HHHhCccchHHHHHHHHHHHHHhccCCCCH-----HHHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCCCCCCCCCCCCc
Confidence            4789998888 7777777788875433322     124567889999999999999999999999998  4899999999


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCccccccccccchhHHHHhhhhhhhhHHHHHHHH
Q 022622           80 SMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQK  159 (294)
Q Consensus        80 s~~~a~~~~~~~~~l~l~l~~~l~~~~~~~~~~~~~~~~~~Ys~~~pp~r~Kr~~~~~~~~v~~~~g~~~~~g~~~~~~~  159 (294)
                      |++|+..+...+.+.++.++...|+.+..+++ .+......||.      .||++.+++. +.++.+...++    .++.
T Consensus        87 s~~~A~~~~~~~~~~~~~l~~~~~~~~~~l~~-~~~~~~~~Y~~------~Kr~t~~~~~-~~g~~~~~~~l----~g~~  154 (291)
T PRK12886         87 SKGSAILFIVLSSLLMLFAAWFLNPLCLYLSP-PALFFLLLYSY------CKRFTALAHV-VLGFCLALAPL----GAWI  154 (291)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhh------hhccccccHH-HHHHHHHHHHH----HHHH
Confidence            99999988766666666667778998877775 46667899995      7999998884 44433222222    2222


Q ss_pred             HhhcCCccCcHHHHHHHHHHHHHHHHHHHHccCCChhhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 022622          160 YVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSF  239 (294)
Q Consensus       160 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~a~~l~~~~~~~~~~~~~~~~~~~~~  239 (294)
                      .+.| ..  +...+.+.+.+.+|+.++|++|++||+|||+|+|+||+|+++|++++.+.........+...+..+...+.
T Consensus       155 a~~g-~~--~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (291)
T PRK12886        155 AIRG-TI--ELPAILLGLAVLFWVAGFDILYALQDLEFDRKEGLHSIPAKLGVNGSLWIARVFHLLMIGFLFALGISAGL  231 (291)
T ss_pred             HHcC-CC--cHHHHHHHHHHHHHHHHHHHHHHhccHHhHHHcCCcCcchhcCchhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            3333 22  34444445556679999999999999999999999999999999999888766666666655555555555


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhccCCCh-hhHHH-HHHHHHHH
Q 022622          240 QLVKLVSIIGHSTLAFLLWLRAQTVDLSNN-ASTYS-FYMFIWKL  282 (294)
Q Consensus       240 ~~~~~~~~~~~~i~~~~l~~~~~~~d~~~~-~~~~~-f~~~i~~~  282 (294)
                      ++   .|..+..+....+.++++..+.+|+ +.|++ |..++|.+
T Consensus       232 ~~---~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~F~~~~~~~  273 (291)
T PRK12886        232 GP---WFLAGLAVTGILLLYEHWLLRGGDLTRLDAAFFNMNGYIS  273 (291)
T ss_pred             cH---HHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHhHHHH
Confidence            54   3444555556666688888888874 46766 55566655

>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed

Probab=100.00  E-value=7.1e-36  Score=270.68  Aligned_cols=255  Identities=16%  Similarity=0.156  Sum_probs=183.6

Q ss_pred             ccccchHHH-HHHHHHHHhHhhccccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcC--CCCCccCCccC
Q 022622            4 FFLFPNSMY-QIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK--PDLPLASGDLS   80 (294)
Q Consensus         4 ~~~Rp~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~~Nd~~D~~~D~~n~--~~Rpl~sG~is   80 (294)
                      |..||+... ..+|...|..+|.+..++.     ...++++++.+++++++|++||++|+|+|++++  |+||+|||++|
T Consensus        13 R~~kp~~~~l~~~p~~~g~~la~~~~~~~-----~~~~l~~~g~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is   87 (282)
T PRK12848         13 RLDKPIGTLLLLWPTLWALWLAADGIPDL-----WVLVVFVLGVFLMRAAGCVINDYADRDFDGHVKRTKNRPLASGAVS   87 (282)
T ss_pred             CccchHHHHHHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHHHHHHHHHHHHhhHHhccCCCCCCCCCCCCCCCCcC
Confidence            344566666 7778877888775432222     123557788899999999999999999999755  38999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCccccccccccchhHHHHhhhhhhhhHHHHHHHHH
Q 022622           81 MGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKY  160 (294)
Q Consensus        81 ~~~a~~~~~~~~~l~l~l~~~l~~~~~~~~~~~~~~~~~~Ys~~~pp~r~Kr~~~~~~~~v~~~~g~~~~~g~~~~~~~~  160 (294)
                      ++++..++..+.++++.+++.+|+.+..+++ .+.+..++||.      .||++.++++ +.+.   ..+++. ..++..
T Consensus        88 ~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~~-~~~~~~~~Y~~------~Kr~~~~~~~-~~g~---~~g~~~-~~g~~a  155 (282)
T PRK12848         88 EKEALALFVVLVLVAFLLVLTLNTLTIWLSV-AALALAWIYPF------MKRYTHLPQV-VLGA---AFGWGI-PMAFAA  155 (282)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHh------HHhcCcccHH-HHHH---HHHHHH-HHHHHH
Confidence            9999999999999999888888998877774 56677889984      6999988885 4332   222222 122222


Q ss_pred             hhcCCccCcHHHHHHHHHHHHHHHHHHHHccCCChhhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 022622          161 VLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQ  240 (294)
Q Consensus       161 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~a~~l~~~~~~~~~~~~~~~~~~~~~~  240 (294)
                      . ++.  .+...+.+.....+|+...+++|++||+|||+|+|+||+|+++|+|++.+... ++.+........+...+.+
T Consensus       156 ~-~~~--~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  231 (282)
T PRK12848        156 V-QGS--VPLEAWLLFLANILWTVAYDTQYAMVDRDDDLKIGIKSTAILFGRYDKLIIGL-LQLATLALLAWAGWLLGLG  231 (282)
T ss_pred             H-hCC--CcHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCccccHHhccccHHHHHH-HHHHHHHHHHHHHHHhcCc
Confidence            2 322  23444555555667999999999999999999999999999999999877664 3433444444444444544


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCCChhhHHHHH-HHHHHH
Q 022622          241 LVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFY-MFIWKL  282 (294)
Q Consensus       241 ~~~~~~~~~~~i~~~~l~~~~~~~d~~~~~~~~~f~-~~i~~~  282 (294)
                      +   .+.++..+....+.+|+..+|.+|+++|+++| ++.+.+
T Consensus       232 ~---~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~n~~~g  271 (282)
T PRK12848        232 W---AYYWGLLVAAALFVYQQKLIRDREREACFKAFLNNNWVG  271 (282)
T ss_pred             H---HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCcHHH
Confidence            4   44456667778889999999988877665555 444444

>PRK12882 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=8.6e-36  Score=269.53  Aligned_cols=259  Identities=20%  Similarity=0.221  Sum_probs=182.4

Q ss_pred             ccccchHHH-HHHHHHHHhHhhccccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcCCCCCccCCccCHH
Q 022622            4 FFLFPNSMY-QIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMG   82 (294)
Q Consensus         4 ~~~Rp~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~is~~   82 (294)
                      |+.||++.. +..+...|..+|.+...  +.   ...++++++.+++++++|++||++|+|+|++|||+||+++|++|++
T Consensus         9 ~l~Rp~~~~~~~~~~~~g~~~a~~~~~--~~---~~~~l~~l~~~l~~~~~~~~Nd~~D~~iD~~~~~~Rpl~~G~is~~   83 (276)
T PRK12882          9 ELTRPVNAVVAGVAAFIGAFIAGGILS--SP---SLTGLAFAAVFLATGAGNAINDYFDREIDRINRPDRPIPSGAVSPR   83 (276)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHhccccc--hH---HHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCcCCCCcCHH
Confidence            689999999 88888888888854321  11   1135678899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCccccccccccchhHHHHhhhhhhhhHHHHHHHHHhh
Q 022622           83 TGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVL  162 (294)
Q Consensus        83 ~a~~~~~~~~~l~l~l~~~l~~~~~~~~~~~~~~~~~~Ys~~~pp~r~Kr~~~~~~~~v~~~~g~~~~~g~~~~~~~~~~  162 (294)
                      |++.++..+.++++.+++.+|+.+..++. .+.++.+.||.     |+||+++++|..+....|....+|     + ...
T Consensus        84 ~a~~~~~~l~~~g~~~~~~l~~~~~~~~~-~~~~~~~~Yt~-----~lK~~~~~g~~~vg~~~g~~~~~g-----~-~~~  151 (276)
T PRK12882         84 GALAFSILLFAAGVALAFLLPPLCLAIAL-FNSLLLVLYAE-----TLKGTPGLGNASVAYLTGSTFLFG-----G-AAV  151 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHH-----HHhcccchhHHHHHHHHHHHHHHH-----H-HHh
Confidence            99999999999999999989988877764 56667889995     579999888864322222221111     1 222


Q ss_pred             cCCccCcHHHHHHHHHHHHHHHHHHHHccCCChhhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 022622          163 GRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLV  242 (294)
Q Consensus       163 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~  242 (294)
                      +..  .....+.+.....+++.++|++||+||+|+|+++|+||+|+++|+|++.++...................+.++ 
T Consensus       152 ~~~--~~~~~~~l~~~~fl~~~~~~~~~~~~D~e~D~~~G~~tlpv~~G~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~-  228 (276)
T PRK12882        152 GTE--GLLALLVLFALAALATLAREIIKDVEDIEGDRAEGARTLPILIGVRKALYVAAAFLLVAVAASPLPYLLSTFGL-  228 (276)
T ss_pred             ccc--chHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHcCCccccHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-
Confidence            311  11222333444456788999999999999999999999999999999988876655544333332222233333 


Q ss_pred             HHHHHHHHHHH-HHHHHHHHhhccCCChhhHHHHH-HHHHHHHH
Q 022622          243 KLVSIIGHSTL-AFLLWLRAQTVDLSNNASTYSFY-MFIWKLFY  284 (294)
Q Consensus       243 ~~~~~~~~~i~-~~~l~~~~~~~d~~~~~~~~~f~-~~i~~~~~  284 (294)
                        .|.....+. +..+.++.+..|.+|++.|+++| .+.|-+..
T Consensus       229 --~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~g~~  270 (276)
T PRK12882        229 --WYLVLVAPADLVMLAAAYRSLKKTDPTASQKLLKYGMFLALA  270 (276)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence              333333333 34445566677777877776644 45665543

>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

Probab=100.00  E-value=1.3e-35  Score=268.80  Aligned_cols=252  Identities=18%  Similarity=0.201  Sum_probs=179.8

Q ss_pred             cccccchHHH-HHHHHHHHhHhhccccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcCCCCCccCCccCH
Q 022622            3 QFFLFPNSMY-QIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSM   81 (294)
Q Consensus         3 ~~~~Rp~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~is~   81 (294)
                      -|+.||+++. ...+...|..+|.+..+++     ..+++++++.+++++++|++||++|+|+|++|+|+||+|+|++|+
T Consensus         7 ~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~-----~~~~l~~l~~~l~~~~~~~iNd~~D~~iD~~~~~~Rpl~sG~is~   81 (279)
T PRK09573          7 FELIRPKNCIGASIGAIIGYLIASNFKIDL-----KGIILAALVVFLVCAGGNVINDIYDIEIDKINKPERPIPSGRISL   81 (279)
T ss_pred             HHHHhHhHHHHHHHHHHHHHHHHccCCcch-----HHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcCCCccCH
Confidence            3789999999 8888888888875432222     124567889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCccccccccccchhHHHHhhhhhhhhHHHHHHHHHh
Q 022622           82 GTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYV  161 (294)
Q Consensus        82 ~~a~~~~~~~~~l~l~l~~~l~~~~~~~~~~~~~~~~~~Ys~~~pp~r~Kr~~~~~~~~v~~~~g~~~~~g~~~~~~~~~  161 (294)
                      ++++.++..+..+++.++..+|+.+..+++ .+.+..++||.     ++||++.++|..+.+..|....     .++.++
T Consensus        82 ~~a~~~~~~l~~~~~~l~~~l~~~~~~l~~-~~~~~~~~Ys~-----~lKr~~~~~~~~vg~~~G~~~~-----~g~~~~  150 (279)
T PRK09573         82 KEAKIFSITLFIVGLILSIFINIYAFLIAL-LNSILLYLYAK-----DLKKTGLIGNLIVAYLTGLSFI-----FGGLAV  150 (279)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHH-----HHhcCCcHHHHHHHHHHHHHHH-----HHHHHH
Confidence            999999999999999998888998877775 56677899994     4799998888654333333221     122223


Q ss_pred             hcCCccCcHHHHHHHHHHHHHHHHHHHHccCCChhhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 022622          162 LGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQL  241 (294)
Q Consensus       162 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~  241 (294)
                      .+     ....+.+.....+|+.+++++||+||+|+|++.|+||+|+++|+|++.++.....................++
T Consensus       151 ~~-----~~~~~~l~~~~f~~~~~~~~~~~~~D~~~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (279)
T PRK09573        151 FN-----VLRIIILFLCAFFSTWSREIVKDIEDIEGDLKENVITLPIKYGIKKSWYIAKILLILAIVLSPLPYFLGIFGI  225 (279)
T ss_pred             cc-----chHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHCCCccccHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22     1222333344456788999999999999999999999999999999988876665544444332222222333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHh-hccCCChhhHHHHHHH
Q 022622          242 VKLVSIIGHSTLAFLLWLRAQ-TVDLSNNASTYSFYMF  278 (294)
Q Consensus       242 ~~~~~~~~~~i~~~~l~~~~~-~~d~~~~~~~~~f~~~  278 (294)
                         .|..+..+....+.++.. ..+.+|++.|++-.+.
T Consensus       226 ---~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  260 (279)
T PRK09573        226 ---YYLIVVIICDILFIIAMLILLKNPSIEGASKASKY  260 (279)
T ss_pred             ---HHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence               344444445555555533 3455566665555443

>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=100.00  E-value=2.7e-35  Score=267.42  Aligned_cols=257  Identities=17%  Similarity=0.166  Sum_probs=184.8

Q ss_pred             cccchHHH-HHHHHHHHhHhhccccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcC--CCCCccCCccCH
Q 022622            5 FLFPNSMY-QIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK--PDLPLASGDLSM   81 (294)
Q Consensus         5 ~~Rp~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~~Nd~~D~~~D~~n~--~~Rpl~sG~is~   81 (294)
                      ..||.... ..+|+..|..+|.+.. ..++   ...++++++.+++++++|++|||+|+|+|++|+  ++||+++|++|+
T Consensus        16 ~~kp~~~~l~~~~~~~g~~la~~~~-~~~~---~~~ll~~l~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~is~   91 (285)
T PRK12847         16 LHKPIGILLVFFPTLFGLLLASHSL-LPDI---SLLVLFIIGSVLMRSAGCIINDIFDRKIDKHVARTKNRPLASGALSV   91 (285)
T ss_pred             cchHHHHHHHHHHHHHHHHHHhCcc-CCcH---HHHHHHHHHHHHHHHHHHHHHhHHHhhhccCCCcccCCCCCCCCcCH
Confidence            44444555 7778888888875432 1232   224668889999999999999999999999765  489999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCccccccccccchhHHHHhhhhhhhhHHHHHHHHHh
Q 022622           82 GTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYV  161 (294)
Q Consensus        82 ~~a~~~~~~~~~l~l~l~~~l~~~~~~~~~~~~~~~~~~Ys~~~pp~r~Kr~~~~~~~~v~~~~g~~~~~g~~~~~~~~~  161 (294)
                      +|+..+...+.++++.+++.+|+.++.++. .+.+..+.||.      .||++.+++. +.+   +..+++.. .++...
T Consensus        92 ~~a~~~~~~l~~~~~~l~~~~~~~~~~~~~-~~~~~~~~Y~~------~Kr~~~~~~~-~~g---~~~~~~~l-~~~~a~  159 (285)
T PRK12847         92 KQALILLFILLLIALVILLLLNKTTIYLSF-IAVILIVLYPL------MKRFFYWPQL-FLG---FTFNMGIL-MAFAAV  159 (285)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHhccc------cccCCcccHH-HHH---HHHHHHHH-HHHHHH
Confidence            999999999999999988888988887775 56777899995      7999988884 333   33333321 222233


Q ss_pred             hcCCccCcHHHHHHHHHHHHHHHHHHHHccCCChhhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 022622          162 LGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQL  241 (294)
Q Consensus       162 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~  241 (294)
                      .| ..  +...+.+.....+|+.+++++|++||+|+|+|+|+||+|+++|+|++.++.....+..+...+ .+...+..+
T Consensus       160 ~g-~~--~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~  235 (285)
T PRK12847        160 QN-QL--DIEAILLYIGCIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGNKTRKYILRLYIISLILWLI-LGIISSLHN  235 (285)
T ss_pred             cC-CC--cHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCchhHHHhccccHHHHHHHHHHHHHHHHH-HHHHhcCcH
Confidence            23 32  344455555667899999999999999999999999999999999998887666554443333 344444432


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCChhhHHH-HHHHHHHHHH
Q 022622          242 VKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYS-FYMFIWKLFY  284 (294)
Q Consensus       242 ~~~~~~~~~~i~~~~l~~~~~~~d~~~~~~~~~-f~~~i~~~~~  284 (294)
                         .+++++.+....+.+++..+|.+|+++|++ |+.+.+.++.
T Consensus       236 ---~~y~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~l  276 (285)
T PRK12847        236 ---IFYLAILAAAGIFYYQYKLLDFDNPANCMYAFKANHYVGLL  276 (285)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhHHHHHH
Confidence               222344445668888999999888766554 4445655544

>PRK12392 bacteriochlorophyll c synthase; Provisional

Probab=100.00  E-value=3.6e-35  Score=270.15  Aligned_cols=247  Identities=19%  Similarity=0.277  Sum_probs=170.6

Q ss_pred             ccccchHHHHHHHHHHHhHhhcccc-CCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcCCCCCccCCccCHH
Q 022622            4 FFLFPNSMYQIVGITSIAILPLQSF-ADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMG   82 (294)
Q Consensus         4 ~~~Rp~~~~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~l~~~l~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~is~~   82 (294)
                      |+.||++++..+|+..|.++|.+.. ++.+... ..+..+++...+..+++|++|||+|+|+|++|+|.||+++|++|++
T Consensus        17 ~L~kP~t~l~~~p~~~g~~lA~g~~~~~~~~~~-l~l~~~~~~~~L~~~a~~~iND~~D~~~D~~n~rtRpl~~G~is~~   95 (331)
T PRK12392         17 ELLDPVTWISVFPCLAGGVMASGAMQPTLHDYL-LLLALFLMYGPLGTGFSQSVNDYFDLELDRVNEPTRPIPSGRLSEK   95 (331)
T ss_pred             HHHCHHHHHHHHHHHHHHHHHcCCCCCChhHHH-HHHHHHHHHHHHHHHHHhHHhcceeecccccCCCCCCCCcCCcCHH
Confidence            6789999995555555566775421 2222111 1122234444556678999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhch-------HHHHHHHHHHHHHHhHhcCCCCccccccccccchhHHHHhhhhhhhhHHHH
Q 022622           83 TGLAITLTLSLTSLAIALSLQS-------PPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFI  155 (294)
Q Consensus        83 ~a~~~~~~~~~l~l~l~~~l~~-------~~~~~~~~~~~~~~~~Ys~~~pp~r~Kr~~~~~~~~v~~~~g~~~~~g~~~  155 (294)
                      +++.....+..+++.++..++.       +.+....+++.+++++||.  ||+++||+++.++.. ++   ...++... 
T Consensus        96 ~al~~~~~l~~la~~lg~~L~~~~~~~~~~~il~~~~~~l~l~~~YS~--~P~~lKr~~~~g~~~-vG---l~~~~~~~-  168 (331)
T PRK12392         96 EALWNSIIVLLLAIGLGVWLGLHIGGERGMVIISSILAGLFVAYIYSA--PPLKLKKNILTSAPA-VG---FSYGFITF-  168 (331)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHhhhhcC--CchhhhccchhHHHH-HH---HHHHHHHH-
Confidence            9999999988888877665542       2222322356789999996  999999998876643 32   22222211 


Q ss_pred             HHHHHhhcCCccCcHHHHHHHHHHHHHHHHHHHHccCCChhhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHHH
Q 022622          156 HFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGA  235 (294)
Q Consensus       156 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~a~~l~~~~~~~~~~~~~~~~~  235 (294)
                      ..+....|.   .+...+.+.....+|+.+++++||++|+|+|++.|+||+|+++|+|++.++......+..+..+..+.
T Consensus       169 ~~~~a~~g~---~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G~~~a~~i~~~~~~~~~~~~~~~~~  245 (331)
T PRK12392        169 LSANALFSD---IRPEVVWLAGLNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIGAKNTFLVSFIIIDLVFAVFAWLAW  245 (331)
T ss_pred             HHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHHHcccchhhHHHcCCeeeEeEEcHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            112233342   23444444556667899999999999999999999999999999999998887666566666666666


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 022622          236 SSSFQLVKLVSIIGHSTLAFLLWLRAQTV  264 (294)
Q Consensus       236 ~~~~~~~~~~~~~~~~i~~~~l~~~~~~~  264 (294)
                      ..+.++   .+.....+.+.++.+|.+..
T Consensus       246 ~~~~~~---~~~~~~~~~~~~~~~q~~l~  271 (331)
T PRK12392        246 SWGFTV---LMYFILVGLVLNIVIQIQLY  271 (331)
T ss_pred             HhcccH---HHHHHHHHHHHHHHHHHHHH
Confidence            666654   23344455566677777764

>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase

Probab=100.00  E-value=5.8e-35  Score=265.03  Aligned_cols=216  Identities=20%  Similarity=0.247  Sum_probs=162.6

Q ss_pred             ccccchHHH-HHHHHHHHhHhhccccCC-CChHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcCCCCCccCCccCH
Q 022622            4 FFLFPNSMY-QIVGITSIAILPLQSFAD-LTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSM   81 (294)
Q Consensus         4 ~~~Rp~~~~-~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~l~~~l~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~is~   81 (294)
                      |++||+|+. +.+++..|.+.|.....+ ++.  ...++.++++..+.++++|.+|||+|+|+|++|+|+||+++|++|+
T Consensus         5 ~l~rp~t~~~~~~~~~~G~~~a~~~~~~~~~~--~~~ll~~~~~~~l~~~~~n~~Nd~~D~~~D~~~~~~Rpi~~G~is~   82 (283)
T TIGR01476         5 ELMKPVTWIPPIWACFCGALASGYERGFPEHW--WLMLLGMLMAGPLGTGFSQSINDYFDRDVDAINEPQRPIPSGIISL   82 (283)
T ss_pred             EecCCceehhHHHHHHHHHHhccCCCCcchhH--HHHHHHHHHHHHHHHHHHHHHHhHhhhCcccCCCCCCCCCCCCcCH
Confidence            689999999 999998888887432222 221  1223446778999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhchHH-HHHHHHHHHHHHhHhcCCCCccccccccccchhHHHHhhhhhhhhHHHHHHHHH
Q 022622           82 GTGLAITLTLSLTSLAIALSLQSPP-LIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKY  160 (294)
Q Consensus        82 ~~a~~~~~~~~~l~l~l~~~l~~~~-~~~~~~~~~~~~~~Ys~~~pp~r~Kr~~~~~~~~v~~~~g~~~~~g~~~~~~~~  160 (294)
                      ++++....++..+++.++..++.+. ..++ ..+.+.+++||.  ||+|+||++++++.. ++..-...++.    ....
T Consensus        83 ~~a~~~~~~~~~~~~~l~~~l~~~~~~~l~-~~~~~~~~~Ys~--~p~~lk~~~~~g~~~-vg~~~~~~~~~----~~~~  154 (283)
T TIGR01476        83 REVRWNWLVLTVAGLLVALVLGNWLIVLFT-VVGIVLAVIYSM--PPIKLKRNGWLGPPA-VGLSYEGLPWM----AGHA  154 (283)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhheecC--chhhhccCCCccHHH-HHHHHHHHHHH----HHHH
Confidence            9999999999999988888777665 4444 357778999995  999999999888853 33210011111    1112


Q ss_pred             hhcCCccCcHHHHHHHHHHHHHHHHHHHHccCCChhhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHHH
Q 022622          161 VLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVI  232 (294)
Q Consensus       161 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~a~~l~~~~~~~~~~~~~~  232 (294)
                      ..+ .  .+...+.......+++.+.+++||+||+|+||++|+||+|+++|+|++++++..+..+.++..+.
T Consensus       155 ~~~-~--~~~~~~~~~~~~~l~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~  223 (283)
T TIGR01476       155 IFA-P--LTWQSVVVALIYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVMIGVKRAAIVAVTTINVFQAMVIG  223 (283)
T ss_pred             HhC-C--CCHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcCcceEEcHHHHHHHHHHHHHHHHHHHHH
Confidence            223 2  23333333444556788899999999999999999999999999999999988777766665543

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.

>PRK12884 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=7.3e-35  Score=263.91  Aligned_cols=257  Identities=19%  Similarity=0.266  Sum_probs=185.7

Q ss_pred             ccccchHHH-HHHHHHHHhHhhccccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcCCCCCccCCccCHH
Q 022622            4 FFLFPNSMY-QIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMG   82 (294)
Q Consensus         4 ~~~Rp~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~is~~   82 (294)
                      |+.||+++. +..+...|.++|.+..   ++   ..+++.+++.+++++++|++||++|+|+|++|||+||+++|++|++
T Consensus         9 ~l~R~~~~~~~~~~~~~g~~la~~~~---~~---~~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~r~~Rpl~~G~is~~   82 (279)
T PRK12884          9 ELLRPEHGLMAGIAVVLGAIIALGGL---PL---DEALLGFLTAFFASGSANALNDYFDYEVDRINRPDRPIPSGRISRR   82 (279)
T ss_pred             HHhhhhHHHHHHHHHHHHHHHHCCCC---ch---HHHHHHHHHHHHHHHHHHHHHhhhhHhhhhccCCCCCCCCCCCCHH
Confidence            689999999 8888888888875432   21   1235577899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCccccccccccchhHHHHhhhhhhhhHHHHHHHHHhh
Q 022622           83 TGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVL  162 (294)
Q Consensus        83 ~a~~~~~~~~~l~l~l~~~l~~~~~~~~~~~~~~~~~~Ys~~~pp~r~Kr~~~~~~~~v~~~~g~~~~~g~~~~~~~~~~  162 (294)
                      +++.++.++.++++.++..+|+....+.+ ++.+.++.||.     ++||+++++|.++....|...     ..++.+. 
T Consensus        83 ~a~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~Ys~-----~lK~~~~~~~~~~~~~~~~~~-----~~g~~~~-  150 (279)
T PRK12884         83 EALLLAILLFILGLIAAYLISPLAFLVVI-LVSVLGILYNW-----KLKEYGLIGNLYVAFLTGMTF-----IFGGIAV-  150 (279)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHH-----hhccccchhHHHHHHHHHHHH-----HHHHHHh-
Confidence            99999999999999998888988777764 57778999995     479999888854322112111     1112222 


Q ss_pred             cCCccCcHHHHHHHHHHHHHHHHHHHHccCCChhhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 022622          163 GRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLV  242 (294)
Q Consensus       163 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~  242 (294)
                      ++.   +...+.+.....+|+.+++++||++|+|||++.|+||+|+++|+|++.++........++...........++ 
T Consensus       151 ~~~---~~~~~~l~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  226 (279)
T PRK12884        151 GEL---NEAVILLAAMAFLMTLGREIMKDIEDVEGDRLRGARTLAILYGEKIAGRIAAALFILAVLLSPLPYLFGIFNI-  226 (279)
T ss_pred             CCC---chHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHcCCeeechHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-
Confidence            221   1233444445557888999999999999999999999999999999998887766666655444333333343 


Q ss_pred             HHHHHHHHHHHHHHHHHHH-hhccCCChhhHHHHHHHHHHHHH
Q 022622          243 KLVSIIGHSTLAFLLWLRA-QTVDLSNNASTYSFYMFIWKLFY  284 (294)
Q Consensus       243 ~~~~~~~~~i~~~~l~~~~-~~~d~~~~~~~~~f~~~i~~~~~  284 (294)
                        .+.....+....+.+++ +..+.+|+++++++..+.+..+.
T Consensus       227 --~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (279)
T PRK12884        227 --LYLAPVLVADLIFLYSAYSLLRSQDRETIRKVRKITLTAML  267 (279)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence              34444445556666665 44566667777777555444433

>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed

Probab=100.00  E-value=1.4e-34  Score=265.68  Aligned_cols=216  Identities=21%  Similarity=0.240  Sum_probs=162.0

Q ss_pred             ccccchHHH-HHHHHHHHhHhhccccCCCChHHH-HHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcCCCCCccCCccCH
Q 022622            4 FFLFPNSMY-QIVGITSIAILPLQSFADLTPKYF-MEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSM   81 (294)
Q Consensus         4 ~~~Rp~~~~-~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~l~~~l~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~is~   81 (294)
                      +++||+++. +.+++..|.+.+. . .++..... ...+.++++..++++++|++|||+|+|+|++|+|+||+++|++|+
T Consensus        32 ~l~RP~~~~~~~~~~~~g~~~~~-~-~~~~~~~~~~~~l~~~l~~~l~~~~~~~~Nd~~D~~~D~~~~~~Rpl~sG~is~  109 (314)
T PRK07566         32 QLMKPITWFPPMWAFLCGAVSSG-A-FGWTLENVLKLLAGMLLAGPLLCGTSQTLNDYFDREVDAINEPYRPIPSGAISL  109 (314)
T ss_pred             HHhCCcchHHHHHHHHHHHHHcC-C-CCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccccCCCCCCCCCceeCH
Confidence            578999999 9999887776542 2 22322111 112446677888999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCccccccccccchhHHHHhhhhhhhhHHHHHHHHHh
Q 022622           82 GTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYV  161 (294)
Q Consensus        82 ~~a~~~~~~~~~l~l~l~~~l~~~~~~~~~~~~~~~~~~Ys~~~pp~r~Kr~~~~~~~~v~~~~g~~~~~g~~~~~~~~~  161 (294)
                      ++++.++.++..+++.+++.+|+....+++ .+.+.+++||.  ||+++||+++++|..+....|....+    .+..+.
T Consensus       110 ~~a~~~~~~l~~~~~~l~~~l~~~~~~l~l-~~~~~~~~Yt~--gP~~lK~~~~~g~i~vg~~~g~~~~~----~g~~~~  182 (314)
T PRK07566        110 RWVLYLIAVLTVLGLAVAYLLGPWVFLAAL-LGLFLAWIYSA--PPLRLKQNGWLGNYAVGLSYEGLPWW----AGAAAF  182 (314)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHChHHHHHHH-HHHHHHHHhcC--CccccccccchhhHHHHHHHHHHHHH----HHHHHh
Confidence            999999999999999988888988777664 57778999996  89999999988886432212221111    112222


Q ss_pred             hcCCccCcHHHHHHHHHHHHHHHHHHHHccCCChhhhHhcCCcccceecchhhHHHHHHHHHHHHHHHH
Q 022622          162 LGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVS  230 (294)
Q Consensus       162 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~a~~l~~~~~~~~~~~~  230 (294)
                      .++.  .+...+.......+++.+++++||++|+|+||++|+||+|+++|+|++.+++..+..+.++..
T Consensus       183 ~~~~--~~~~~~l~~~~~~l~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~~~a~~l~~~l~~~~~~~~  249 (314)
T PRK07566        183 GAGL--PSWPIVILALLYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGEKNAARIACVVIDLFQLAV  249 (314)
T ss_pred             ccCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHcCCcccceeEcHHHHHHHHHHHHHHHHHHH
Confidence            2222  233344444455567888999999999999999999999999999999988877766666654

>KOG1381 consensus Para-hydroxybenzoate-polyprenyl transferase [Coenzyme transport and metabolism]

Probab=100.00  E-value=2.7e-36  Score=260.85  Aligned_cols=264  Identities=16%  Similarity=0.091  Sum_probs=207.6

Q ss_pred             cccccchHHH-HHHHHHHHhHhhccccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcCC--CCCccCCcc
Q 022622            3 QFFLFPNSMY-QIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKP--DLPLASGDL   79 (294)
Q Consensus         3 ~~~~Rp~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~~Nd~~D~~~D~~n~~--~Rpl~sG~i   79 (294)
                      .|+.||..-+ ..+|+.+..++|.+.  +..+.. -.+.++-.|++++|+++|++||..|+|+|++.+|  .||++||++
T Consensus        71 mRldkPiGTwLLywPCtWSIamaAda--g~~p~~-~mL~LFG~GAllMRgAGCtINDlwDkdlD~KVeRtklRPlAsG~l  147 (353)
T KOG1381|consen   71 MRLDKPIGTWLLYWPCTWSIAMAADA--GLLPSI-KMLALFGVGALLMRGAGCTINDLWDKDLDAKVERTKLRPLASGSL  147 (353)
T ss_pred             HhcCCCceeeeeecchHHHHHhccCC--Cccchh-HHHHHhcccHHHhccCCceehhhhhhhhhhhHhhhcccccccCCc
Confidence            3778897777 888887767776543  222222 2356688999999999999999999999997664  899999999


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCccccccccccchhHHHHhhhhhhhhHHHHHHHH
Q 022622           80 SMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQK  159 (294)
Q Consensus        80 s~~~a~~~~~~~~~l~l~l~~~l~~~~~~~~~~~~~~~~~~Ys~~~pp~r~Kr~~~~~~~~v~~~~g~~~~~g~~~~~~~  159 (294)
                      |++++..+...+..+|+.+..++|+.+..++. .++..++.|+.      +||.++++|. ++   |..+++|.. .++.
T Consensus       148 s~~qaI~fL~~ql~~gLgiLlqLn~ysi~lg~-~sl~~v~~ypl------~kr~TY~pq~-vL---gltfnwGAl-lGw~  215 (353)
T KOG1381|consen  148 SPRQAIGFLGAQLSLGLGILLQLNWYSIALGA-SSLALVITYPL------MKRFTYWPQL-VL---GLTFNWGAL-LGWC  215 (353)
T ss_pred             chhHHHHHHHHHHHHhHHHHHhccHHHHHhcc-cccccEEEeeh------hhhcchhHHH-HH---hhhcchhhh-hcch
Confidence            99999999999999999999999999988885 67888899996      8999999985 44   566777653 3455


Q ss_pred             HhhcCCccCcHHHHHHHHHHHHHHHHHHHHccCCChhhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 022622          160 YVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSF  239 (294)
Q Consensus       160 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~a~~l~~~~~~~~~~~~~~~~~~~~~  239 (294)
                      ++.|..  .+...+.+++--..|++.+|++|++||+++|.+.|+||.+.+||+++..++.. +-......+..+|+.+++
T Consensus       216 A~~g~~--~~s~~~plYls~v~Wtl~YDTIYAHQDK~dDvk~gvkSTALrfG~nTK~wl~g-f~a~~ia~La~aG~~s~q  292 (353)
T KOG1381|consen  216 ALKGSL--SPSAVLPLYLSGVCWTLIYDTIYAHQDKRDDVKIGVKSTALRFGDNTKPWLSG-FGAAQIASLAAAGIASDQ  292 (353)
T ss_pred             hhcCcc--ChhhhhHHHHhhhhhhhhhhhhhhcccchhhhHhcchhhhhhcCCCCchHHhh-hhHHHHHHHHHhhhccCC
Confidence            555532  22233455555557999999999999999999999999999999998877764 344455566778888888


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhccCCChhhHHHHHH-HHHHHHHHHH
Q 022622          240 QLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYM-FIWKLFYAEY  287 (294)
Q Consensus       240 ~~~~~~~~~~~~i~~~~l~~~~~~~d~~~~~~~~~f~~-~i~~~~~~~y  287 (294)
                      .|   +++.+..+++.++..|..++|.||+++|+++|. |+|.+++..+
T Consensus       293 ~~---pyy~~lg~~~~~L~~~i~~vdiDnp~dC~k~f~sN~ntGli~~~  338 (353)
T KOG1381|consen  293 TW---PYYAALGAVAARLGSQIYKVDIDNPSDCWKKFKSNSNTGLILFS  338 (353)
T ss_pred             Cc---hHHHHHHHHHHHHHhheeeeecCChHHHHHHHHhcCcchHHHHH
Confidence            87   555668888999999999999999888776665 5666665443

>PRK04375 protoheme IX farnesyltransferase; Provisional

Probab=100.00  E-value=1.2e-33  Score=257.60  Aligned_cols=260  Identities=15%  Similarity=0.100  Sum_probs=180.4

Q ss_pred             ccccchHHH-HHHHHHHHhHhhccccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcC--CCCCccCCccC
Q 022622            4 FFLFPNSMY-QIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK--PDLPLASGDLS   80 (294)
Q Consensus         4 ~~~Rp~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~~Nd~~D~~~D~~n~--~~Rpl~sG~is   80 (294)
                      |++||+++. ..+++..|.++|.+.  .+++.   .+++++++.+++++++|++|||+|+|+|++|+  |+||+|+|++|
T Consensus        15 ~L~rp~~~~~~~~~~~~G~~la~~~--~~~~~---~~~l~~l~~~l~~aa~~~iNd~~D~~iD~~~~Rt~~Rpl~sG~is   89 (296)
T PRK04375         15 ALTKPRVISLNLFTALGGMLLAPPG--VPPLL---LLLLTLLGIALVAGAAGALNNYIDRDIDAKMERTKNRPLVTGRIS   89 (296)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHhcCC--CCCHH---HHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCccCCCCCCCCCcC
Confidence            688999999 999988888888543  23322   24567889999999999999999999999977  69999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHHHHhHhcCCCCccccccccccchhHHHHhhhhhhhhHHHHHHHH
Q 022622           81 MGTGLAITLTLSLTSLAIALS-LQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQK  159 (294)
Q Consensus        81 ~~~a~~~~~~~~~l~l~l~~~-l~~~~~~~~~~~~~~~~~~Ys~~~pp~r~Kr~~~~~~~~v~~~~g~~~~~g~~~~~~~  159 (294)
                      ++|+..++..+.++++.++.. .|+.+..++.+........||.     ++||++. +|..+.+..+...++    .++.
T Consensus        90 ~~~a~~~~~~l~~~g~~l~~~l~~~~~~~l~~~~~~~~~~~Ys~-----~lKr~~~-~~~~v~~~~g~~~~l----~g~~  159 (296)
T PRK04375         90 PREALIFGLVLGVLGFLLLGLFVNPLAAWLTLAGIFFYVVVYTL-----WLKRRTP-QNIVIGGAAGAMPPL----IGWA  159 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcc-----chhcCCc-cchHHHHHHHHhHHH----HHHH
Confidence            999999999999999888754 5776666554222335678985     4799997 554444332222111    1222


Q ss_pred             HhhcCCccCcHHHHHHHHHHHHHHHHHHHHccCCChhhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 022622          160 YVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSF  239 (294)
Q Consensus       160 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~a~~l~~~~~~~~~~~~~~~~~~~~~  239 (294)
                      .+.| .  .+...+++.....+|+..++..++++|+|||++.|+||+|+++|+|++.+.............+........
T Consensus       160 a~~g-~--~~~~~~~l~~~~~lw~~~~~~~~~~~d~~D~~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (296)
T PRK04375        160 AVTG-S--LSWEALILFLIIFLWTPPHFWALAIFRKDDYAAAGIPMLPVVKGIRVTKRQILLYTVLLVAVSLLPVLLGMA  236 (296)
T ss_pred             HhCC-C--CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHcCCCccceeeCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            2223 2  244444555566779999999999999999999999999999999998877655544333333322222223


Q ss_pred             hHHHHHHHH-HHHHHHHHHHHHHhhccCCChhh-HHHHHHHHHHHHH
Q 022622          240 QLVKLVSII-GHSTLAFLLWLRAQTVDLSNNAS-TYSFYMFIWKLFY  284 (294)
Q Consensus       240 ~~~~~~~~~-~~~i~~~~l~~~~~~~d~~~~~~-~~~f~~~i~~~~~  284 (294)
                      ++   .+.. +....+..+.++++..+.+|+++ .+.|+.++|.+..
T Consensus       237 ~~---~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~F~~s~~~~~~  280 (296)
T PRK04375        237 GL---LYLVVALLLGAWFLYYAWRLYRKDDRKWARKLFRYSINYLTL  280 (296)
T ss_pred             CH---HHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHH
Confidence            43   2322 33344556667888887777665 4666666666543

>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed

Probab=100.00  E-value=1.6e-33  Score=254.78  Aligned_cols=261  Identities=14%  Similarity=0.132  Sum_probs=180.4

Q ss_pred             cccccchHHH-HHHHHHHHhHhhccccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcC--CCCCccCCcc
Q 022622            3 QFFLFPNSMY-QIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK--PDLPLASGDL   79 (294)
Q Consensus         3 ~~~~Rp~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~~Nd~~D~~~D~~n~--~~Rpl~sG~i   79 (294)
                      .|++||++.. ..++...|..+|.+..  .++.   .+++..++.+++++++|++||++|+|+|++|+  |+||+|+|++
T Consensus         6 ~~l~rp~~~~~~~~~~~~g~~la~~~~--~~~~---~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~i   80 (279)
T PRK12869          6 LKLLKPRVIWLLDLAAVAGYFLAAKHG--VSWL---PLIPLLIGGTLASGGSAAFNHGIERDIDKVMSRTSKRPTPVGLV   80 (279)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHhccCC--CCHH---HHHHHHHHHHHHHHHHHHHhchHhcCCCCCCCCCCCCCcCCCCc
Confidence            3688999999 8888888888885432  2322   23456788899999999999999999999987  5999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHHHHhHhcCCCCccccccccccchhHHHHhhhhhhhhHHHHHHH
Q 022622           80 SMGTGLAITLTLSLTSLAIALS-LQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQ  158 (294)
Q Consensus        80 s~~~a~~~~~~~~~l~l~l~~~-l~~~~~~~~~~~~~~~~~~Ys~~~pp~r~Kr~~~~~~~~v~~~~g~~~~~g~~~~~~  158 (294)
                      |++|+..++..+..+++.++.. +|+.+.....+......+.||.     ++||++++ |..+.+..|...+++.    +
T Consensus        81 s~~~a~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~Yt~-----~lKr~~~~-~~~v~~~~g~~~~l~g----~  150 (279)
T PRK12869         81 NRKEALAVGSALSALGTALGFLLLGPLTALFIALGWFFYAVVYTI-----WLKPRTWL-NIVIGGFAGNAAALAG----Y  150 (279)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-----ccccCChH-HHHHHHHHHHHHHHHH----H
Confidence            9999999999999999988877 7876543333344567788995     47999985 5455544443333322    2


Q ss_pred             HHhhcCCccCcHHHHHHHHHHHHHHHHHHHHccCCChhhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 022622          159 KYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSS  238 (294)
Q Consensus       159 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~a~~l~~~~~~~~~~~~~~~~~~~~  238 (294)
                      ....| ..  +...+.+.+.+.+|+.+.....+.+|+|||+++|+||+|+++|+|++.+................+. .+
T Consensus       151 ~a~~g-~~--~~~~~ll~~~~~~w~~~~~~~l~~~d~edd~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~-~~  226 (279)
T PRK12869        151 ASGTG-SL--DLEAVLLSFLIYLWTPGHIWSLALKYREDYRRAGVPMLPAVVGEKTSVRAISISNALMIPYILLLYL-YY  226 (279)
T ss_pred             HHHhC-CC--CHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHcCCeecceeecHHHHHHHHHHHHHHHHHHHHHHHH-hh
Confidence            22233 22  3344444445556877776667889999999999999999999999988776665544444333333 34


Q ss_pred             hhHHHHHHHHHHHHH-HHHHHHHHhhccCCChhhH-HHHHHHHHHHHHH
Q 022622          239 FQLVKLVSIIGHSTL-AFLLWLRAQTVDLSNNAST-YSFYMFIWKLFYA  285 (294)
Q Consensus       239 ~~~~~~~~~~~~~i~-~~~l~~~~~~~d~~~~~~~-~~f~~~i~~~~~~  285 (294)
                      .++   .|..+..+. +..+.++.+..+.+|++.| +.|+.+++.+...
T Consensus       227 ~g~---~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~s~~~l~~~  272 (279)
T PRK12869        227 IGL---IGLILVAILSAALMATSIRALLNPTKEEAWKMFKASSPYLALF  272 (279)
T ss_pred             ccH---HHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHH
Confidence            444   343333332 3345566666665555544 5577788887654

>PRK05951 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=4.6e-33  Score=253.76  Aligned_cols=260  Identities=17%  Similarity=0.223  Sum_probs=183.9

Q ss_pred             ccccchHHH-HHHHHHHHhHhhccccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcC-----CCCCccCC
Q 022622            4 FFLFPNSMY-QIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK-----PDLPLASG   77 (294)
Q Consensus         4 ~~~Rp~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~~Nd~~D~~~D~~n~-----~~Rpl~sG   77 (294)
                      +..||+|+. +..|+..|.++|.....++++.   ..++++++++++|+++|.+|||+|+|.|+.|+     |+||+++|
T Consensus         9 ~~~Rp~tl~~s~~~v~lG~a~a~~~~~~f~~~---~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~rt~~~~r~l~~G   85 (296)
T PRK05951          9 IFTRPWSFVMTAIVAFFSIAYGYYLFRSFDPL---LGALMLLGYFLLHASLNVFNDYKDYVLDCDHHETTGYRQHPIQAG   85 (296)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHhcCCcCHH---HHHHHHHHHHHHHHHHHHHHhHHHHhcCCccccccCCCCCccccC
Confidence            458999999 9999999999987554566643   34678899999999999999999976655544     68999999


Q ss_pred             ccCHHHHHHHHHHHHHHHHHH----HHHhchHHHHHHHHHHHHHHhHhcCCCCccccccccccchhHHHHhhhhhhhhHH
Q 022622           78 DLSMGTGLAITLTLSLTSLAI----ALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSF  153 (294)
Q Consensus        78 ~is~~~a~~~~~~~~~l~l~l----~~~l~~~~~~~~~~~~~~~~~~Ys~~~pp~r~Kr~~~~~~~~v~~~~g~~~~~g~  153 (294)
                      ++|+++++.....+..+++.+    ....++..+.+++ ++.+.++.||.  ||+++|++++ |+..+...+|....+|.
T Consensus        86 ~is~~~~~~~~~~~~~ia~~~g~~l~~~~~~~~l~l~~-~~~~~~~~Yt~--~P~~lky~gl-Ge~~v~~~~g~~~vlg~  161 (296)
T PRK05951         86 IMTLGHLRVLGIALGAIALQLGWSLVLDRGIGAVTLAL-LGVFLWTCYMG--PPFFLKYRWL-GEHLVFYAWSHMLVMGL  161 (296)
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH-HHHHHHHHHcC--CCcccCCCCc-hHHHHHHHHHHHHHHHH
Confidence            999999998888766655433    3344666666664 68889999995  8999998876 88654433444444443


Q ss_pred             HHHHHHHhhcCCccCcHHHHHHHHHHHHHHHHHHHHccCCChhhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHHHH
Q 022622          154 FIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIV  233 (294)
Q Consensus       154 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~a~~l~~~~~~~~~~~~~~~  233 (294)
                           .+++++..  +...+.......+++...+.+||+||+|+||+.|+||+|+++|+|++ ++.......+|+..+..
T Consensus       162 -----~~~~~~~~--~~~~~~~sl~~~l~~~~il~~n~~~D~e~D~~~G~~Tlav~lG~~~a-~~~~~~~~~~~~~~~~~  233 (296)
T PRK05951        162 -----IYVWLGNL--SSPNLLAGVPLGLLMALVLLSNNLRDIEDDERKGIPTLAVIFGRRGA-ALYIFALLSPYVILQIL  233 (296)
T ss_pred             -----HHHHhCcc--cHHHHHHHHHHHHHHHHHHHHCCCccchhHHHCCCeeeeeeEcHhhH-HHHHHHHHHHHHHHHHH
Confidence                 23333332  33333344455567778889999999999999999999999999999 66656666677666554


Q ss_pred             HHhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCChhhHHHHHHH
Q 022622          234 GASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMF  278 (294)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~d~~~~~~~~~f~~~  278 (294)
                      ......+++...+.+++-.......++++..|.++++.|.+.+..
T Consensus       234 ~~~g~~~~~~l~~ll~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (296)
T PRK05951        234 LIAILTPLISLWALLSLLVAYALCLWQLRKFPPDPDEATVQLFML  278 (296)
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHHHhhCcccccHHHHHHHHH
Confidence            444333332234444444444556667777777666666666655

>PRK13595 ubiA prenyltransferase; Provisional

Probab=100.00  E-value=1.6e-33  Score=252.71  Aligned_cols=256  Identities=17%  Similarity=0.175  Sum_probs=176.2

Q ss_pred             ccccchHHH-HHHHHHHHhHhhccccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcCCCCCccCCccCHH
Q 022622            4 FFLFPNSMY-QIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMG   82 (294)
Q Consensus         4 ~~~Rp~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~is~~   82 (294)
                      +.+||.+|+ +..++..|...+.+ ..|..+..   .++++......|.+.|.+||++|+|+|++|+|+||+++|++|++
T Consensus        17 ~~sRP~~wi~t~~~~~~G~~~~g~-~~~~~~~~---~~l~~~~~~p~n~~~~giND~fD~eiDa~Npr~~~i~~G~is~~   92 (292)
T PRK13595         17 LISRPALWVNTVGTLVTGVWLTGH-LYTLDPGV---LPLLLYLTLPFNLLIYGLNDLADRETDAASPRKGGWQGARLSPG   92 (292)
T ss_pred             HHhCcHHHHHHHHHHHHHHHHhcC-cccchhHH---HHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCCCCCcCccCHH
Confidence            578999999 99999888866643 23332232   24456667788889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH----HHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCccccccccccchhHHHHhhhhhhhhHHHHHHH
Q 022622           83 TGLAITLTLSL----TSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQ  158 (294)
Q Consensus        83 ~a~~~~~~~~~----l~l~l~~~l~~~~~~~~~~~~~~~~~~Ys~~~pp~r~Kr~~~~~~~~v~~~~g~~~~~g~~~~~~  158 (294)
                      +++.+...+..    +++.+++..|+.+..+.. ++.+++++||.  ||.|+|++|++++++.. ..|  .+++.    +
T Consensus        93 ~~~~~~~~~~~~~~~~~l~la~~l~~~~~~l~~-v~~~l~~~YS~--pPlRlK~rp~l~~l~~~-~~g--~p~~~----~  162 (292)
T PRK13595         93 EVRPLLRAVLLLNAPFLLYLALLLPPAATLLLL-LYAALFVGYSL--PPLRFKARPFLDGLSNA-AYA--LPLAL----P  162 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHcc--CccchhcCcchhHHHHH-HHH--HHHHH----H
Confidence            99886554433    355667778887776664 67789999995  99999999998776542 122  23221    2


Q ss_pred             HHhhcCCccCcHHHHHHHHHHHHHHHHHHHHccCCChhhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 022622          159 KYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSS  238 (294)
Q Consensus       159 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~a~~l~~~~~~~~~~~~~~~~~~~~  238 (294)
                      ..+.|..   ..  +.......+|..++|++|++||+|+||+.|+||+|+++|+|++.+++..+++++........   .
T Consensus       163 ~~~~g~~---~~--~~~l~a~~~w~~g~dii~ai~DiegDr~~Gi~Slpv~lG~r~a~~~a~~~~~~a~~~~~~~~---~  234 (292)
T PRK13595        163 ALALGAP---VP--WPPLLALMAWSVGKHAFDAAQDIPADRAAGTRTVATTLGVRGTALYALAWFLLAGALLWPVS---R  234 (292)
T ss_pred             HHHcCCc---ch--HHHHHHHHHHHHHHHHHHhccChHhHHHcCCeechHHhCcHhHHHHHHHHHHHHHHHHHHhc---c
Confidence            2233421   11  11123445788999999999999999999999999999999999998877765433332211   1


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHHH
Q 022622          239 FQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKLFYAEYL  288 (294)
Q Consensus       239 ~~~~~~~~~~~~~i~~~~l~~~~~~~d~~~~~~~~~f~~~i~~~~~~~y~  288 (294)
                      ..+      +...+.......+-+ .|.+..+..+.|..++|..+....+
T Consensus       235 ~~~------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~  277 (292)
T PRK13595        235 LTA------LALWLICGGMALALW-RRPTPETAHRLYPLSIVTPWIVGTV  277 (292)
T ss_pred             hHH------HHHHHHHHHHHHHHh-cCCCHHHHhccchHHHHHhHHHHHH
Confidence            111      111111222222223 5655566777788888876665443

>PLN00012 chlorophyll synthetase; Provisional

Probab=100.00  E-value=5.4e-33  Score=259.06  Aligned_cols=263  Identities=19%  Similarity=0.219  Sum_probs=172.5

Q ss_pred             ccccchHHH-HHHHHHHHhHhhccccCCCChHH-HHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcCCCCCccCCccCH
Q 022622            4 FFLFPNSMY-QIVGITSIAILPLQSFADLTPKY-FMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSM   81 (294)
Q Consensus         4 ~~~Rp~~~~-~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~l~~~l~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~is~   81 (294)
                      |++||+++. ..+++..|+... +. .++.+.. ...++.++++..++++++|++|||+|+|+|++|+|+||+++|++++
T Consensus        90 ~L~RP~t~~~~~~~v~~G~~~~-g~-~~~~~~~~~~~ll~~ll~~~L~~~~an~iNDy~D~~iD~~~~~~Rpi~sG~Is~  167 (375)
T PLN00012         90 QLTKPVTWPPLVWGVLCGAAAS-GN-FHWTLEDVAKSIVCMLMSGPFLTGYTQTINDWYDREIDAINEPYRPIPSGAISE  167 (375)
T ss_pred             HHhCHHHHHHHHHHHHHHHHHc-CC-CCchhhhHHHHHHHHHHHHHHHHHHHHHHHCeecHhhhccCCCCCCcCCCccCH
Confidence            689999999 999998887742 22 2222111 1123557778889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHh-------chHHHHHHHHHHHHHHhHhcCCCCccccccccccchhHHHHhhhhhhhhHHH
Q 022622           82 GTGLAITLTLSLTSLAIALSL-------QSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFF  154 (294)
Q Consensus        82 ~~a~~~~~~~~~l~l~l~~~l-------~~~~~~~~~~~~~~~~~~Ys~~~pp~r~Kr~~~~~~~~v~~~~g~~~~~g~~  154 (294)
                      ++++.....+..+++.++..+       |+..+.+++ ++.+++++||.  ||+++||++++||.. +|......++   
T Consensus       168 ~~al~~~~~l~~~~l~l~~~L~~~~~~~~~~~~~l~l-~gi~l~~~YS~--pPl~lKr~~~~G~v~-lG~~~~~lp~---  240 (375)
T PLN00012        168 NEVITQIWVLLLGGLGLAYTLDVWAGHDFPIVFYLAL-GGSLLSYIYSA--PPLKLKQNGWIGNYA-LGASYISLPW---  240 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH-HHHHHhhhhcC--CchhhhHhccHhHHH-HHHHHHHHHH---
Confidence            999987766666665555443       444455553 56778999996  999999999988853 3321111111   


Q ss_pred             HHHHHHhhcCCccCcHHHHHHHHHHHHHHHHHHHHccCCChhhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHH
Q 022622          155 IHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVG  234 (294)
Q Consensus       155 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~a~~l~~~~~~~~~~~~~~~~  234 (294)
                      +. ...+.| .  .+...+.+.+..++++.+++++||+||+|+|++.|+||+|+++|+|++.+++.....+.+...+  +
T Consensus       241 ~~-g~a~~g-~--~s~~~illal~~~l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~~~a~~l~~~~l~l~~l~~~--~  314 (375)
T PLN00012        241 WA-GQALFG-T--LTPDVVVLTLLYSIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGVETAKWICVGSIDITQLSVA--G  314 (375)
T ss_pred             HH-HHHHcC-C--CCHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHcCCcccceeechHHHHHHHHHHHHHHHHHHH--H
Confidence            11 122334 2  2344444445556788899999999999999999999999999999998887654444433322  2


Q ss_pred             HhhhhhHHHHHHH-HHHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHH
Q 022622          235 ASSSFQLVKLVSI-IGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKLFY  284 (294)
Q Consensus       235 ~~~~~~~~~~~~~-~~~~i~~~~l~~~~~~~d~~~~~~~~~f~~~i~~~~~  284 (294)
                      +......  ..+. .........+.++.+ ...+|+.++...|...-..++
T Consensus       315 ~l~~~~~--~~y~~~~~~l~l~~l~~~~~-~~~~~p~~~~~~~~~~a~~~~  362 (375)
T PLN00012        315 YLLAIGK--PYYALALLGLIIPQIFFQFK-YFLPDPVKNDVKYQASAQPFL  362 (375)
T ss_pred             HHHHHhH--HHHHHHHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHHH
Confidence            2222111  0111 111122233334433 333588888888876443333

>TIGR02056 ChlG chlorophyll synthase, ChlG

Probab=100.00  E-value=4.2e-33  Score=255.04  Aligned_cols=265  Identities=19%  Similarity=0.233  Sum_probs=176.7

Q ss_pred             ccccchHHH-HHHHHHHHhHhhccccCCCChH-HHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcCCCCCccCCccCH
Q 022622            4 FFLFPNSMY-QIVGITSIAILPLQSFADLTPK-YFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSM   81 (294)
Q Consensus         4 ~~~Rp~~~~-~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~l~~~l~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~is~   81 (294)
                      |+.||+++. +.+++..|...+ +. .+++.. .....+.+++++.++++++|.+|||+|+|.|+.|+|+||+++|++|+
T Consensus        21 ~l~RP~~~~~~~~~~~~G~~~~-~~-~~~~~~~~~~~ll~~ll~~~l~~~~~n~~NDy~D~d~D~~~~~~Rpi~~G~is~   98 (306)
T TIGR02056        21 QLMKPITWIPLIWGVVCGAAAS-GN-FHWSLEDVAKAALCMLLSGPCLTGYTQTINDFYDRDIDAINEPYRPIPSGAISE   98 (306)
T ss_pred             HHcChHhhHHHHHHHHHHHHHc-CC-CCcchhhHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhccCCCCCCCCCCccCH
Confidence            689999999 999988877753 22 222211 01113445677899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhc-------hHHHHHHHHHHHHHHhHhcCCCCccccccccccchhHHHHhhhhhhhhHHH
Q 022622           82 GTGLAITLTLSLTSLAIALSLQ-------SPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFF  154 (294)
Q Consensus        82 ~~a~~~~~~~~~l~l~l~~~l~-------~~~~~~~~~~~~~~~~~Ys~~~pp~r~Kr~~~~~~~~v~~~~g~~~~~g~~  154 (294)
                      ++++.....+..+++.++..+.       +..+.+++ ++.+.+++||.  ||+++||++++++..+.+..+. .+..  
T Consensus        99 ~~a~~~~~~l~~~~~~lg~~l~~~~~~~~~~~~~l~~-~~~~~~~~Yt~--gP~~lk~~g~~G~i~vg~~~~~-~~~~--  172 (306)
T TIGR02056        99 PEVITQIVLLFIAGIAIAFILDLWAGHEFPNVFVLAL-FGSFIAFIYSA--PPLKLKQNGWLGNFALGASYIA-LPWW--  172 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHH-HHHHHHHHHcC--ChhhhhhcccHHHHHHHHHHHH-HHHH--
Confidence            9999988888887777665442       44455554 67788999996  9999999998788543222111 1111  


Q ss_pred             HHHHHHhhcCCccCcHHHHHHHHHHHHHHHHHHHHccCCChhhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHH
Q 022622          155 IHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVG  234 (294)
Q Consensus       155 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~a~~l~~~~~~~~~~~~~~~~  234 (294)
                        +.....| .  ++...+......++|+.+.++.||++|+|+|++.|+||+|+++|+|++.+++..+...++.......
T Consensus       173 --~~~a~~g-~--~~~~~~l~~~~~~l~~~~i~~~n~~~D~e~D~~~G~~Tlpv~lG~~~a~~~~~~l~~~~~~~~~~~~  247 (306)
T TIGR02056       173 --AGHALFG-E--LNPDIAVLTLIYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGIETAAWICVGAIDIFQGLIAAYL  247 (306)
T ss_pred             --HHHHHhC-C--CcHHHHHHHHHHHHHHHHHHHHHHccChHHHHHcCCcCcchhcChHHHHHHHHHHHHHHHHHHHHHH
Confidence              1112223 2  2344444444556788899999999999999999999999999999999998877666565554333


Q ss_pred             HhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHH
Q 022622          235 ASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKLFYA  285 (294)
Q Consensus       235 ~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~d~~~~~~~~~f~~~i~~~~~~  285 (294)
                      ......++.  . +..........++.+.... |++.....++..-..+++
T Consensus       248 ~~~~~~~~~--~-ll~ll~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  294 (306)
T TIGR02056       248 LAIGENLYA--A-ALVALIIPQITFQDKYFLK-DPLKNDVKYQASAQPFLV  294 (306)
T ss_pred             HHhcCcHHH--H-HHHHHHHHHHHHHHHHHHh-ChHhhCcchhhhhhHHHH
Confidence            333333211  1 1122223444455444332 444444555554444443

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).

>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase

Probab=100.00  E-value=9.7e-33  Score=250.08  Aligned_cols=261  Identities=17%  Similarity=0.117  Sum_probs=183.1

Q ss_pred             ccccchHHH-HHHHHHHHhHhhccccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcC--CCCCccCCccC
Q 022622            4 FFLFPNSMY-QIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK--PDLPLASGDLS   80 (294)
Q Consensus         4 ~~~Rp~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~~Nd~~D~~~D~~n~--~~Rpl~sG~is   80 (294)
                      |+.||+++. +.+++..|.++|.+.. +.++.   .++++.++.+++++++|++|||+|+|+|++|+  |+||+++|++|
T Consensus         5 ~l~rp~~~~~~~~~~~~g~~la~~~~-~~~~~---~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~is   80 (280)
T TIGR01473         5 QLTKPRIISLLLITAFAGMWLAPGGA-LVNPP---LLLLTLLGTTLAAASANAFNMYIDRDIDKKMKRTRNRPLVTGRIS   80 (280)
T ss_pred             HHccHHHHHHHHHHHHHHHHHhCCCC-CCCHH---HHHHHHHHHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCCCCcC
Confidence            789999999 9999888888885432 23322   24567889999999999999999999999876  59999999999


Q ss_pred             HHHHHHHHHHHHHHHHHH-HHHhchHHHHHHHHHHHH-HHhHhcCCCCccccccccccchhHHHHhhhhhhhhHHHHHHH
Q 022622           81 MGTGLAITLTLSLTSLAI-ALSLQSPPLIFGLIVWFL-LGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQ  158 (294)
Q Consensus        81 ~~~a~~~~~~~~~l~l~l-~~~l~~~~~~~~~~~~~~-~~~~Ys~~~pp~r~Kr~~~~~~~~v~~~~g~~~~~g~~~~~~  158 (294)
                      ++++..++..+.++|+.+ ....|+.+..++. .+.+ ..++||.     ..||++.+.+ .+.+..|...+++.     
T Consensus        81 ~~~a~~~~~~~~~~g~~il~~~~~~~~~~l~~-~~~~~~~~~Yt~-----~lKr~~~~~~-~v~~~~g~~~~l~g-----  148 (280)
T TIGR01473        81 PREALAFGLLLGVLGVAILAAFVNPLAALLGL-FGIFFYVIVYTI-----WLKRRTPQNT-VIGGFAGAVPPLIG-----  148 (280)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHhhcCh-----hhccCCchhH-HHHHHHHHHHHHHH-----
Confidence            999999999999998884 4457887766664 4444 3789994     2799998644 45444443333322     


Q ss_pred             HHhhcCCccCcHHHHHHHHHHHHHHHHHHHHccCCChhhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 022622          159 KYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSS  238 (294)
Q Consensus       159 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~a~~l~~~~~~~~~~~~~~~~~~~~  238 (294)
                      ....++..  +...+.+.....+|+...+..++++|+||||++|+||+|+++|+|++.+................+....
T Consensus       149 ~~a~~g~~--~~~~~~l~~~~~~w~~~~~~~~a~~~~~dd~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~  226 (280)
T TIGR01473       149 WAAVTGSI--SLGAWLLFAIIFLWQPPHFWALALKYKDDYRAAGIPMLPVVKGERITKRQIALYTAALLPVSLLLAFLGG  226 (280)
T ss_pred             HHHhcCCC--CHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHCCCccCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            22233333  3344444455667888887788899999999999999999999999877665554433333333333334


Q ss_pred             hhHHHHHHH-HHHHHHHHHHHHHHhhccCC-Chh-hHHHHHHHHHHHHHH
Q 022622          239 FQLVKLVSI-IGHSTLAFLLWLRAQTVDLS-NNA-STYSFYMFIWKLFYA  285 (294)
Q Consensus       239 ~~~~~~~~~-~~~~i~~~~l~~~~~~~d~~-~~~-~~~~f~~~i~~~~~~  285 (294)
                      .++   .|. .+..+.+..+.++++..|.+ |++ +.+.|+.+++.+...
T Consensus       227 ~~~---~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~f~~s~~~~~~~  273 (280)
T TIGR01473       227 TGW---LYLIVATLLGALFLYLAFKFYRDPTDRKKARKLFKFSLIYLALL  273 (280)
T ss_pred             ccH---HHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence            444   233 34444566777888888766 554 456666677766543

This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.

>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated

Probab=100.00  E-value=1.5e-31  Score=243.81  Aligned_cols=223  Identities=17%  Similarity=0.181  Sum_probs=167.2

Q ss_pred             ccccchHHH-HHHHHHHHhHhhccccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhch--hhhhh--cCCCCCccCCc
Q 022622            4 FFLFPNSMY-QIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADV--EIDKV--NKPDLPLASGD   78 (294)
Q Consensus         4 ~~~Rp~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~~Nd~~D~--~~D~~--n~~~Rpl~sG~   78 (294)
                      |+.||+++. +.+|+..|.++|... .++++.   ..++.+++.+++|+++|.+|||+|+  |.|+.  ++|+||+++|+
T Consensus         8 ~~~Rp~~~~~~~~p~l~G~~~a~~~-~~~~~~---~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~~~~~~r~l~~G~   83 (293)
T PRK06080          8 ELARPKTLPAAFAPVLVGTALAYWL-GSFHPL---LALLALLAALLLQIATNLANDYGDYVKGTDTEDRVGPLRAIGRGG   83 (293)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHc-CCccHH---HHHHHHHHHHHHHHHHHHHHhHHHhccCCCcccccCCcccccCCC
Confidence            678999999 999999988888532 344432   3466788999999999999999999  46753  55799999999


Q ss_pred             cCHHHHHHHHHHHHHHHHHH----HHHhchHHHHHHHHHHHHHHhHhcCCCCccccccccccchhHHHHhhhhhhhhHHH
Q 022622           79 LSMGTGLAITLTLSLTSLAI----ALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFF  154 (294)
Q Consensus        79 is~~~a~~~~~~~~~l~l~l----~~~l~~~~~~~~~~~~~~~~~~Ys~~~pp~r~Kr~~~~~~~~v~~~~g~~~~~g~~  154 (294)
                      +|+++++..+..+.++++.+    ....+++.+.+++ ++.+.++.||.  ||.++|++++ +|+.+....|.....+  
T Consensus        84 is~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~-~~~~~~~~Ys~--~p~~~~~~gl-ge~~~~~~~G~~~~~~--  157 (293)
T PRK06080         84 ISPKQVKRAAIAFFGLAALLGLYLVAVSGWWLLLLGL-LCIAAAILYTG--GPKPYGYTGL-GELFVGVFFGLVIVLG--  157 (293)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHhhhhcC--CCCccCCCCc-HHHHHHHHHHHHHHHH--
Confidence            99999998777776655444    3444666666664 57778999995  8888888876 8864432233332222  


Q ss_pred             HHHHHHhhcCCccCcHHHHHHHHHHHHHHHHHHHHccCCChhhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHH
Q 022622          155 IHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVG  234 (294)
Q Consensus       155 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~a~~l~~~~~~~~~~~~~~~~  234 (294)
                         ..+.+.+.  .+...+...+...+++.+.+++||++|+|+||+.|+||+|+++|+|++.++...+..++++..+...
T Consensus       158 ---~~~~~~~~--~~~~~~~~~l~~~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v~lG~~~a~~~~~~l~~~~~~~~~~~~  232 (293)
T PRK06080        158 ---TYYLQAGT--VDSAVFLPALPCGLLIGAVLLANNIRDIETDRENGKNTLAVRLGDKNARRLHAALLALAYLCIVLLA  232 (293)
T ss_pred             ---HHHHhcCC--CCHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHcCCeeEEeeECcHhHHHHHHHHHHHHHHHHHHHH
Confidence               12233322  2444555556677788999999999999999999999999999999999999999988888777666


Q ss_pred             HhhhhhH
Q 022622          235 ASSSFQL  241 (294)
Q Consensus       235 ~~~~~~~  241 (294)
                      .....++
T Consensus       233 ~~~~~~~  239 (293)
T PRK06080        233 LLGLASP  239 (293)
T ss_pred             HHhhhhH
Confidence            6555554

>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed

Probab=100.00  E-value=1.5e-31  Score=242.03  Aligned_cols=199  Identities=23%  Similarity=0.290  Sum_probs=148.6

Q ss_pred             ccccchHHH-HHHHHHHHhHhhccccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcCCCCCccCCccCHH
Q 022622            4 FFLFPNSMY-QIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMG   82 (294)
Q Consensus         4 ~~~Rp~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~is~~   82 (294)
                      |++|||++. ...+...|.++|.+..+++  .   ..+.++++.++.++++|++||++|+|+|++|||+||+++|+++++
T Consensus         8 ~l~Rp~~~~~~~~~~~~G~~la~~~~~~~--~---~~~l~~~~~~~~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~is~~   82 (277)
T PRK12883          8 EITRPHNCILAGIVGILGSLVALGGIPPI--K---TLILIFLVVYLGCSGGNTINDYFDYEIDKINRPNRPLPRGAMSRK   82 (277)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHcCCCCcH--H---HHHHHHHHHHHHHHHHhHHHhhhhHhccccCCCCCCCCCCccCHH
Confidence            689999999 8777777788775432222  1   134467788889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCccccccccccchhHHHHhhhhhhhhHHHHHHHHHhh
Q 022622           83 TGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVL  162 (294)
Q Consensus        83 ~a~~~~~~~~~l~l~l~~~l~~~~~~~~~~~~~~~~~~Ys~~~pp~r~Kr~~~~~~~~v~~~~g~~~~~g~~~~~~~~~~  162 (294)
                      +++.++.++..+|+.+++.+|+.++.+++ .+...+++||.     +.||++.++|..+.+..|.....|     +..+ 
T Consensus        83 ~a~~~~~~l~~~g~~l~~~~~~~~~~~~~-~~~~~~~~Y~~-----~~k~~~~lg~~~vg~~~g~~~~~g-----~~a~-  150 (277)
T PRK12883         83 AALYYSLLLFAVGLALAYLINIEAFLFAL-GAYVLMFLYAW-----KLKPLPFIGNVVVALLTGATPIYG-----AIAV-  150 (277)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhh-----cccCCcchhhHHHHHHHHHHHHHH-----HHHh-
Confidence            99999999999999888889998877775 56678999996     578888778864432223221111     1112 


Q ss_pred             cCCccCcHHHHHHHHHHHHHHHHHHHHccCCChhhhHhcCCcccceecchhhHHHHHHHHH
Q 022622          163 GRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYAL  223 (294)
Q Consensus       163 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~a~~l~~~~~  223 (294)
                      + ..  +...+. ......++.+.++.||+||+|+|++.|+||+|+++|+|++.++.....
T Consensus       151 ~-~~--~~~~~~-~~~~fl~~~~~~~~~~~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~~~  207 (277)
T PRK12883        151 G-RI--GLAGYL-AICAFLVNVAREIMKDIEDIEGDKAKGAKTLPIIIGKKRAAYIGAIFG  207 (277)
T ss_pred             c-cc--cHHHHH-HHHHHHHHHHHHHHhhhhhhccHHHcCCcCcChHhcHHHHHHHHHHHH
Confidence            2 11  222222 122334566888999999999999999999999999999988765443

>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=100.00  E-value=1.9e-30  Score=238.14  Aligned_cols=226  Identities=13%  Similarity=0.117  Sum_probs=168.4

Q ss_pred             ccccchHHH-HHHHHHHHhHhhccccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcC----CCCCccCCc
Q 022622            4 FFLFPNSMY-QIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK----PDLPLASGD   78 (294)
Q Consensus         4 ~~~Rp~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~~Nd~~D~~~D~~n~----~~Rpl~sG~   78 (294)
                      |..||+|+. +..|+..|.++|.....++++.   ..++++++++++|.++|.+|||+|.+.|+.++    ++|++++|.
T Consensus         8 ~~~Rp~tl~~s~~pvllG~a~a~~~~~~~~~~---~~ll~ll~~~~~~~~~N~~NDy~D~~~g~D~~~~~~~~~~i~~~~   84 (317)
T PRK13387          8 KLVEIHTKIASFFPVILGTLFSLYVAKIFDWL---LFLAFMVAMLAFDIATTAINNYMDFKKALDTADYVGIGNGIGQHG   84 (317)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHhCCCccHH---HHHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccccCCcchhccCC
Confidence            578999999 9999999999986544456643   24667888899999999999999998766554    589999999


Q ss_pred             cCHHHHHHHHHHHHHHHHH----HHHHhchHHHHHHHHHHHHHHhHhcCCCCccccccccccchhHHHHhhhhhhhhHHH
Q 022622           79 LSMGTGLAITLTLSLTSLA----IALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFF  154 (294)
Q Consensus        79 is~~~a~~~~~~~~~l~l~----l~~~l~~~~~~~~~~~~~~~~~~Ys~~~pp~r~Kr~~~~~~~~v~~~~g~~~~~g~~  154 (294)
                      +++|+++.....+..++..    +++..|+..+.+++ ++.+.++.||.  ||+++||++. ||+.+...+|.....|. 
T Consensus        85 ls~~~v~~~~~~~~~ia~~~Gl~L~~~~g~~~l~igl-~g~~~~~~Yt~--gP~~l~y~gL-Ge~~v~i~~G~~~v~g~-  159 (317)
T PRK13387         85 LKPRNVLTVILLMYVVAAILGVYLCMNTSWLLLVIGL-ICFAIGILYTG--GPLPLSRMPL-GEIFSGLTMGFGIFLLA-  159 (317)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHH-HHHHHhhhhcC--CCcccccCcc-HHHHHHHHHHHHHHHHH-
Confidence            9999999887777666555    66777877766664 68889999995  9999999995 99754433454433332 


Q ss_pred             HHHHHHhhcCCccCcH------------------HHHHHHHHHHHHHHHHHHHccCCChhhhHhcCCcccceecchhhHH
Q 022622          155 IHFQKYVLGRPVVITR------------------PLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVL  216 (294)
Q Consensus       155 ~~~~~~~~g~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~a~  216 (294)
                          .+++.+..++..                  ..+...+...+.+...+..||++|+|+||++|+||+|+++|+|++.
T Consensus       160 ----~yv~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v~lG~~~a~  235 (317)
T PRK13387        160 ----VYINTNTITIESLLFQGEMFTIQGNLIAIIAIGVISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVYYIGREKGV  235 (317)
T ss_pred             ----HHHhcCCCchHHHHhcccchhhcchhHHHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCeeeeeeEcHHhHH
Confidence                233322211110                  0011334444566677999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhH
Q 022622          217 RLCVYALFFAYGVSVIVGASSSFQL  241 (294)
Q Consensus       217 ~l~~~~~~~~~~~~~~~~~~~~~~~  241 (294)
                      +++..+...+|+..+........++
T Consensus       236 ~l~~~l~~~a~l~~~~~v~~g~lp~  260 (317)
T PRK13387        236 VLFAILFYASYLAIAVIVLMGYISP  260 (317)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            9999999888887765554443444

>PRK12871 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=1.8e-30  Score=236.21  Aligned_cols=254  Identities=13%  Similarity=0.086  Sum_probs=164.3

Q ss_pred             ccccchHHH-HHHHHHHHhHhhccccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhc---------C--CC
Q 022622            4 FFLFPNSMY-QIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVN---------K--PD   71 (294)
Q Consensus         4 ~~~Rp~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~~Nd~~D~~~D~~n---------~--~~   71 (294)
                      |++||+++. ...++.+|.++|....+.+++.  . +++..+++.++.+++|++|||.|+|.|++|         |  ++
T Consensus        10 ~l~Rp~~l~~~~~~~~~g~~lA~~~~g~~~~~--~-~~l~~l~~~l~~~ag~~iND~~D~~~D~~~v~rtm~r~~~P~~~   86 (297)
T PRK12871         10 DLTRAHFLPAWPLLFCSGLVLAFANYGGFSWE--L-TIKAALIGLFGFEAGFVLNDYVDRKRDRLDVENTLTRYWRPFKE   86 (297)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHccCCCCHH--H-HHHHHHHHHHHHHHHHHHhhHHHHhcCcchHhhhhhccccCCCC
Confidence            678999998 8888778777774211233422  1 232344445555778999999999999865         3  48


Q ss_pred             CCccCCccCHHHHHHHHHHHHHHHHHHHHHhch----HHHHHHHHHHHHHHhHhcCCCCccccccccccchhHHHHhhhh
Q 022622           72 LPLASGDLSMGTGLAITLTLSLTSLAIALSLQS----PPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGL  147 (294)
Q Consensus        72 Rpl~sG~is~~~a~~~~~~~~~l~l~l~~~l~~----~~~~~~~~~~~~~~~~Ys~~~pp~r~Kr~~~~~~~~v~~~~g~  147 (294)
                      ||+++|++|+++++.+.+.+.++|+.++..++.    ..+.++ +.+.++++.|+.      .||.+.++...+++.  .
T Consensus        87 Rpl~sG~is~~~a~~~~i~l~~i~~~l~~~l~~~~~~~~~~l~-~~~~~~~~~Y~~------~kr~~~~p~~~l~G~--~  157 (297)
T PRK12871         87 RPIPSGKLSSKNAFALFILLAAVTSALILTLPYPNSLYVFVIM-LYSYGIEAFYQV------KKRNQKYPVAQLLGR--T  157 (297)
T ss_pred             CccCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhc------ccccccccHHHHHHH--H
Confidence            999999999999999999998888887766544    233333 345677888884      344432222112221  1


Q ss_pred             hhhhHHHHHHHHHhhcCCccCcHHHHHHHHHHHHHHHHHHHHccCCChhhhHhcCCcccceecchhhHHHHHHHHHHHHH
Q 022622          148 VYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAY  227 (294)
Q Consensus       148 ~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~a~~l~~~~~~~~~  227 (294)
                      ..++  ..+.+....| .  .+...+....+..+|+.+++++||++|+|||++.|+||+|+++|++++.+....+..+..
T Consensus       158 ~~~~--~~~~g~~~~g-~--~~~~~~ll~~~~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~~~t~~~i~~~~~l~~  232 (297)
T PRK12871        158 DFTL--FPAAGYLCYG-Q--PDMTALLYMVFFYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGMKGTMYWVTGFTALHF  232 (297)
T ss_pred             HHHH--HHHHHHHHhC-C--CcHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHcCCeeeeeeechHHHHHHHHHHHHHHH
Confidence            1111  1111222333 2  233444445566779999999999999999999999999999999988766554444333


Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCChhhHHHHHHH
Q 022622          228 GVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMF  278 (294)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~d~~~~~~~~~f~~~  278 (294)
                      +..  .+...+.++  ..+.....+.+.++.+|.+..+.+|++.|-+-|..
T Consensus       233 l~~--~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~  279 (297)
T PRK12871        233 LAA--IFFLRELGP--IALYGFLAGFVLLAGANLYLWKEKSQDAGMKILPL  279 (297)
T ss_pred             HHH--HHHHHHhhH--HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence            222  233334443  12233335566778899999988888887665554

>PRK13362 protoheme IX farnesyltransferase; Provisional

Probab=99.98  E-value=3.9e-30  Score=234.89  Aligned_cols=199  Identities=14%  Similarity=0.150  Sum_probs=148.2

Q ss_pred             ccccchHHH-HHHHHHHHhHhhccccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcC--CCCCccCCccC
Q 022622            4 FFLFPNSMY-QIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK--PDLPLASGDLS   80 (294)
Q Consensus         4 ~~~Rp~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~~Nd~~D~~~D~~n~--~~Rpl~sG~is   80 (294)
                      |++||+++. ..+++..|..+|.++  +.++.   ..+.++++..+.++++|++||++|+|+|++++  ++||+|||++|
T Consensus        18 ~L~RP~~~~~~~~~~~~G~~la~~~--~~~~~---~~~~~~lg~~l~~aaa~~~Nd~~D~~iD~~~~Rt~~RPlpsG~is   92 (306)
T PRK13362         18 QVTKPGIIFGNVISVAGGFFLASKG--HVDPV---LMLAAVIGLSLVVASGCALNNCIDRDIDAKMQRTRNRVTVTGEIS   92 (306)
T ss_pred             HHhCHHHHHHHHHHHHHHHHHHccC--CCCHH---HHHHHHHHHHHHHHHHHHHhChHHhCcCCCCCCCCCCCCCCCCCC
Confidence            678999999 999998888888433  33422   13456788899999999999999999999754  49999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHH-HHhchHHHHHHHHHHHHHHhHhcCCCCccccccccccchhHHHHhhhhhhhhHHHHHHHH
Q 022622           81 MGTGLAITLTLSLTSLAIA-LSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQK  159 (294)
Q Consensus        81 ~~~a~~~~~~~~~l~l~l~-~~l~~~~~~~~~~~~~~~~~~Ys~~~pp~r~Kr~~~~~~~~v~~~~g~~~~~g~~~~~~~  159 (294)
                      +++++.++..+..+|+.+. ...|+.+..+..+.......+||.     ++||++.+++. +.+..+...++    .++.
T Consensus        93 ~~~A~~~~~~l~~~g~~ll~~~~n~~~~~l~~~~~~~~~~~Yt~-----~lKr~t~~~~~-vgg~~ga~p~l----~G~~  162 (306)
T PRK13362         93 LGEALGFGLALGVAGFGLLAAFTNPLAALFAAFGYVVYVGVYSL-----YLKRNSVYGTL-VGSLSGAMPPV----VGYC  162 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhH-----HHhccCcHhHH-HHHHHHHHHHH----HHHH
Confidence            9999999999999988765 445877655553323345778994     37999997764 44433322221    2222


Q ss_pred             HhhcCCccCcHHHHHHHHHHHHHHHHHHHHccCCChhhhHhcCCcccceecchhhHHHHHH
Q 022622          160 YVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCV  220 (294)
Q Consensus       160 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~a~~l~~  220 (294)
                      .+ ++..  +...+.+...+.+|+..++..++++|.|||+++|+||+|+++|+|++.+...
T Consensus       163 a~-~g~~--~~~~~~l~~~~~~W~~~h~~~~ai~~~~Dy~~aG~~~lpv~~G~~~t~~~~~  220 (306)
T PRK13362        163 AV-TGQF--DAGALILLLMFSLWQMPHSYAIAIFRFNDYAAAGIPVLPVARGIAKTKLHIV  220 (306)
T ss_pred             HH-cCCC--cHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHCCCeeeceecChHHHHHHHH
Confidence            33 3332  3445555666778999999999999999999999999999999998876543

>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase

Probab=99.97  E-value=3.3e-29  Score=226.54  Aligned_cols=220  Identities=15%  Similarity=0.123  Sum_probs=165.1

Q ss_pred             cchHHH-HHHHHHHHhHhhccccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhchhh--hhhc--CCCCCccCCccCH
Q 022622            7 FPNSMY-QIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEI--DKVN--KPDLPLASGDLSM   81 (294)
Q Consensus         7 Rp~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~~Nd~~D~~~--D~~n--~~~Rpl~sG~is~   81 (294)
                      ||+|+. ++.|+..|.++|.... .+++.   ..++++++++++|.++|.+|||+|.+.  |+.+  +|.|++++|.+++
T Consensus         1 Rp~tl~~s~~pv~lG~ala~~~~-~f~~~---~~ll~~~~~~~~q~~~N~~NDy~D~~~G~D~~~~~~~~r~i~~g~is~   76 (284)
T TIGR00751         1 RPKTLPLAIAPIVAGTALAAWLH-AFVWL---VALLALATAVLLQILSNYANDYGDGIKGSDTDDRIGPLRGVQKGLITP   76 (284)
T ss_pred             CCchHHHHHHHHHHHHHHHHHcC-CccHH---HHHHHHHHHHHHHHHHHHHHhHHHHhcCCChhhccCCcchhcCCCCCH
Confidence            999999 9999999999996553 66643   346688999999999999999999863  6543  4689999999999


Q ss_pred             HHHHHHHHHHHHHHH----HHHHHhch------HHHHHHHHHHHHHHhHhcCCCCccccccccccchhHHHHhhhhhhhh
Q 022622           82 GTGLAITLTLSLTSL----AIALSLQS------PPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQF  151 (294)
Q Consensus        82 ~~a~~~~~~~~~l~l----~l~~~l~~------~~~~~~~~~~~~~~~~Ys~~~pp~r~Kr~~~~~~~~v~~~~g~~~~~  151 (294)
                      |+++..+..+..++.    .+.+..++      +.+.++ +++.+.+++||.  ||.++|+++. ||..++..+|.....
T Consensus        77 ~~v~~~~~~~~~~a~~~Gi~l~~~~~~~~~~~~~~l~lg-~~~~~~~~~Yt~--gP~~l~y~gL-GE~~v~i~~G~l~v~  152 (284)
T TIGR00751        77 REVKTALITSVALGALSGLVLALLAAPNLSDLFWFIALG-ALCIAAAITYTV--GSKPYGYAGL-GDISVLVFFGPLAVL  152 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHH-HHHHHHhHhhcC--CCCccccCch-HHHHHHHHHHHHHHH
Confidence            999988777665444    44444454      223444 467888999995  9999999997 887654445554444


Q ss_pred             HHHHHHHHHhhcCCccCcHHHHHHHHHHHHHHHHHHHHccCCChhhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHH
Q 022622          152 SFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSV  231 (294)
Q Consensus       152 g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~a~~l~~~~~~~~~~~~~  231 (294)
                      |.     .+++.+..  +...++..+...+.+.+.+.+||++|+|+|+++|+||+|+++|+|+++++...+...+|+..+
T Consensus       153 g~-----~yvq~~~~--~~~~ll~sl~~g~l~~~il~~Nn~~D~~~D~~~Gk~Tl~v~lG~~~a~~l~~~l~~~ay~~~~  225 (284)
T TIGR00751       153 GT-----QYLQAHRV--DWVGILPAVATGLLACAVLNINNLRDIPTDARAGKNTLAVRLGDARTRMYHQGLLAVAGVCTF  225 (284)
T ss_pred             HH-----HHHhcCCC--CHHHHHHHHHHHHHHHHHHHHcCcccchhHHHcCCEeehhhcchHhHHHHHHHHHHHHHHHHH
Confidence            42     23444433  333343344455677888999999999999999999999999999999999888888887776


Q ss_pred             HHHHhhhhhH
Q 022622          232 IVGASSSFQL  241 (294)
Q Consensus       232 ~~~~~~~~~~  241 (294)
                      ........++
T Consensus       226 ~~~~~~~~p~  235 (284)
T TIGR00751       226 VFMLATPISW  235 (284)
T ss_pred             HHHHHhhchH
Confidence            5544444444

This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.

>PLN02922 prenyltransferase

Probab=99.97  E-value=1.1e-27  Score=219.45  Aligned_cols=224  Identities=20%  Similarity=0.225  Sum_probs=162.4

Q ss_pred             ccccchHHH-HHHHHHHHhHhhccccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhchh--hhhhcCCCCCccCCccC
Q 022622            4 FFLFPNSMY-QIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVE--IDKVNKPDLPLASGDLS   80 (294)
Q Consensus         4 ~~~Rp~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~~Nd~~D~~--~D~~n~~~Rpl~sG~is   80 (294)
                      +..||+|+. ++.|+..|.++|....+++++..   .++++++++++|.++|.+|||+|.+  .|+.++..+.-..|  |
T Consensus        20 ~a~Rp~tl~~s~~pv~lG~a~A~~~~g~f~~~~---~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~~~~~~~~~~~--s   94 (315)
T PLN02922         20 RAIKLPMYSVALVPLTVGAAAAYLQTGLFDARR---YGTLLLSSVLVITWLNLSNDAYDADTGVDKNKKESVVNLVG--S   94 (315)
T ss_pred             HHhCcchHHHHHHHHHHHHHHHHHcCCCccHHH---HHHHHHHHHHHHHHHHHHhhhhHhccCcCcccCCCCCCccc--C
Confidence            568999999 99999999999875545666432   4678999999999999999999987  57654322222234  8


Q ss_pred             HHHHHHHHHHHHHHHHH---HHHH--hchHHHHHHHHHHHHHHhHhcCCCCccccccccccchhHHHHhhhhhhhhHHHH
Q 022622           81 MGTGLAITLTLSLTSLA---IALS--LQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFI  155 (294)
Q Consensus        81 ~~~a~~~~~~~~~l~l~---l~~~--l~~~~~~~~~~~~~~~~~~Ys~~~pp~r~Kr~~~~~~~~v~~~~g~~~~~g~~~  155 (294)
                      +++.+.....+.+++..   +...  .+++.+.++ +++++.+++||.  ||+|+||+++ |++.++..+|.....|.| 
T Consensus        95 ~~~v~~~~~~~~~la~~g~~ll~~~~~~~~~l~iG-~~g~~~~~~Yt~--gP~pl~y~gL-GE~~v~i~fG~l~v~g~y-  169 (315)
T PLN02922         95 RRGVLAAAIGCLALGAAGLVWASLVAGNIRVILLL-AAAILCGYVYQC--PPFRLSYKGL-GEPLCFAAFGPLATTAFY-  169 (315)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHH-HHHHHHHHHHhc--CCcccccCcc-hHHHHHHHHHHHHHHHHH-
Confidence            99998877776655543   2212  255555555 478899999995  9999999998 887554444544443332 


Q ss_pred             HHHHHhhcC---C--c---cCcHHHHHHHHHHHHHHHHHHHHccCCChhhhHhcCCcccceecchhhHHHHHHHHHHHHH
Q 022622          156 HFQKYVLGR---P--V---VITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAY  227 (294)
Q Consensus       156 ~~~~~~~g~---~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~a~~l~~~~~~~~~  227 (294)
                          +++.+   .  .   .++...+...+...+.+.+.+.+||++|+|+||+.|+||+|+++|+|++.++...+...+|
T Consensus       170 ----~~~~~~~~~~~~~~~~~~~~~~l~slp~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y  245 (315)
T PLN02922        170 ----LALASGAGGSEMAILPLTPTVLSASVLVGLTTTLILFCSHFHQIDGDRAVGKMSPLVRLGTEKGSRVVRWAVLLLY  245 (315)
T ss_pred             ----HHhcccccccccccccccHHHHHHHHHHHHHHHHHHHHccCcchhhHHHcCccceeeEEChHHHHHHHHHHHHHHH
Confidence                22222   0  0   1233344555666778888999999999999999999999999999999999998888888


Q ss_pred             HHHHHHHHhhhhhH
Q 022622          228 GVSVIVGASSSFQL  241 (294)
Q Consensus       228 ~~~~~~~~~~~~~~  241 (294)
                      +..+........++
T Consensus       246 ~~~i~~v~~~~~p~  259 (315)
T PLN02922        246 SLLAALGLLKALPL  259 (315)
T ss_pred             HHHHHHHHHhhhhH
Confidence            87776655544443

>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=99.97  E-value=1.6e-27  Score=217.08  Aligned_cols=222  Identities=18%  Similarity=0.155  Sum_probs=165.3

Q ss_pred             ccccchHHH-HHHHHHHHhHhhccccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhchh--hhhhcCCCCCccCCccC
Q 022622            4 FFLFPNSMY-QIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVE--IDKVNKPDLPLASGDLS   80 (294)
Q Consensus         4 ~~~Rp~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~~Nd~~D~~--~D~~n~~~Rpl~sG~is   80 (294)
                      +-.||+|+. ++.|+..|.++|.....++++..   .++++++++++|.++|.+|||+|++  .|+. +++ ...++..+
T Consensus        17 ~a~RP~tl~asl~pv~lG~a~a~~~~~~f~~~~---~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~-~~~-~~~~~~~~   91 (304)
T PRK07419         17 AAIKPPMYSVAIMPILVGTAWALGETGVFRLDQ---FITFLLAAILILAWENLSNDVFDADTGIDKN-KFH-SVVNLTGN   91 (304)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHcCCCccHHH---HHHHHHHHHHHHHHHHHHHHHHHHhccCCcc-ccc-CcccccCc
Confidence            457999999 99999999999976545677433   4678899999999999999999998  6774 222 23344456


Q ss_pred             HHHHHHHHHHHHHHHH----HHHHHhchHHHHHHHHHHHHHHhHhcCCCCccccccccccchhHHHHhhhhhhhhHHHHH
Q 022622           81 MGTGLAITLTLSLTSL----AIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIH  156 (294)
Q Consensus        81 ~~~a~~~~~~~~~l~l----~l~~~l~~~~~~~~~~~~~~~~~~Ys~~~pp~r~Kr~~~~~~~~v~~~~g~~~~~g~~~~  156 (294)
                      +++.......+..++.    .+.+..|++.+.++. ++.+.+++||.  ||+++|++++ ||..+.-.+|.+...|.   
T Consensus        92 ~~~v~~~~~~~~~~a~~~Gl~L~~~~g~~~l~ig~-~g~~~~~~YT~--gP~~l~y~gL-GE~~v~l~~G~l~v~g~---  164 (304)
T PRK07419         92 KSLVFWLANLFLLLGLLGILAIALQSDWTVLGLVL-LCCFLGYLYQG--PPFRLGYQGL-GEPLCFLAFGPLAVAAA---  164 (304)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHH-HHHHHhheccC--CCcccCCCCc-hHHHHHHHHHHHHHHHH---
Confidence            8888877666655544    445556776666664 68889999995  9999999997 99765444555544443   


Q ss_pred             HHHHhhcCCccCcHHHHHHHHHHHHHHHHHHHHccCCChhhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHHHh
Q 022622          157 FQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGAS  236 (294)
Q Consensus       157 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~a~~l~~~~~~~~~~~~~~~~~~  236 (294)
                        .+++.+.  ++...+...+..++.+.+...+||++|+|+||+.|+||+|+++|+|++.+++..+...+|+..+.....
T Consensus       165 --~yv~t~~--~~~~~~~~sl~~gll~~~IL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~ay~~~i~~v~~  240 (304)
T PRK07419        165 --LYSQTPS--WSLIPLAASIILGLATSLILFCSHFHQVEDDLAAGKRSPIVRLGTKRGAQLLPWIVGLIYALELLPVLL  240 (304)
T ss_pred             --HHHhcCC--CCHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHcCCcceeeeechHhHHHHHHHHHHHHHHHHHHHHHH
Confidence              2344443  344444445556667778899999999999999999999999999999999998888888877765555


Q ss_pred             hhhhH
Q 022622          237 SSFQL  241 (294)
Q Consensus       237 ~~~~~  241 (294)
                      ...++
T Consensus       241 g~~p~  245 (304)
T PRK07419        241 GFWPW  245 (304)
T ss_pred             hhhHH
Confidence            44444

>PRK13105 ubiA prenyltransferase; Reviewed

Probab=99.97  E-value=7.9e-28  Score=216.61  Aligned_cols=207  Identities=21%  Similarity=0.109  Sum_probs=142.6

Q ss_pred             ccccchHHH-HHHHHHHHhHhhccccCCCChHHHHHHHHHHHHHHHHHHHH----hhhhhhhchhhhhhcCCCCCccCCc
Q 022622            4 FFLFPNSMY-QIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYV----GTVNQVADVEIDKVNKPDLPLASGD   78 (294)
Q Consensus         4 ~~~Rp~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~a~----~~~Nd~~D~~~D~~n~~~Rpl~sG~   78 (294)
                      |.+||++|+ +.+|+..|+.+| ++.+  ++.       .++..++++.+.    |.+|||+|+|.|+.|++.+.. .|.
T Consensus         6 ~~~rP~~wi~~a~pf~~g~~la-~~~~--~~~-------~l~~~l~~~~~~n~am~~~Ndy~D~~~d~dn~r~~g~-~g~   74 (282)
T PRK13105          6 LSSRPISWINTAYPFAAAYLLA-GGEI--DWL-------FVVGTVFFLIPYNLAMYGINDVFDYESDLRNPRKGGV-EGA   74 (282)
T ss_pred             HhcccHHHhccHHHHHHHHHHH-CCCC--ChH-------HHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCcccCCC-CCc
Confidence            689999999 999998888888 3222  221       122233344444    455999999999999764332 588


Q ss_pred             cCHHHHHHHHHHHH----H-HHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCccccccccccchhHHHHhhhhhhhhHH
Q 022622           79 LSMGTGLAITLTLS----L-TSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSF  153 (294)
Q Consensus        79 is~~~a~~~~~~~~----~-l~l~l~~~l~~~~~~~~~~~~~~~~~~Ys~~~pp~r~Kr~~~~~~~~v~~~~g~~~~~g~  153 (294)
                      ++++|.........    . .++.+....|+.++.++. ++++.++.||.  ||+|+|++++.++++..........   
T Consensus        75 i~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~l~~-~ai~~~~~YS~--~p~rlk~~gl~d~~t~~~~f~~~~v---  148 (282)
T PRK13105         75 VLDRAMHRTTLWASVVTTVPFLVVLLAVGSWASGLVLA-VSVFAVVAYSA--PGLRFKERPFLDSLTSSTHFVSPAL---  148 (282)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-HHHHHHHHhcC--CCccccccchHHHHHHHHHHHHHHH---
Confidence            99998854333322    2 333334444666666664 68889999996  9999999999655333221111111   


Q ss_pred             HHHHHHHhhcCCccCcHHHHHHHHHHHHHHHHHHHHccCCChhhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHHH
Q 022622          154 FIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVI  232 (294)
Q Consensus       154 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~a~~l~~~~~~~~~~~~~~  232 (294)
                        .+..++ ++.  .++..+.....+.+|+.+++++||+||+|+||+.|+||+|+++|+|++.+++..++.++++..+.
T Consensus       149 --~G~~~~-~~~--~~~~~~l~~~~~~~~~~a~~ii~~irDie~Dr~~G~~Tlpv~lG~~~a~~~~~~l~~~a~~~~~~  222 (282)
T PRK13105        149 --YGLVLA-GAP--FTAALWAVLAAFFLWGMASHAFGAVQDVVADREAGIASIATVLGARRTVRLAVGLYAAAAVLMLA  222 (282)
T ss_pred             --HHHHHh-hcc--ccHHHHHHHHHHHHHHHHHHHHHhCcchHhHHHcCCccchHHhcHHHHHHHHHHHHHHHHHHHHH
Confidence              112233 432  23444555566677899999999999999999999999999999999999999988887776663

>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase

Probab=99.96  E-value=4.8e-27  Score=212.57  Aligned_cols=222  Identities=14%  Similarity=0.128  Sum_probs=162.6

Q ss_pred             ccccchHHH-HHHHHHHHhHhhccccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhchhh--hhhcCCCCCccCCccC
Q 022622            4 FFLFPNSMY-QIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEI--DKVNKPDLPLASGDLS   80 (294)
Q Consensus         4 ~~~Rp~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~~Nd~~D~~~--D~~n~~~Rpl~sG~is   80 (294)
                      +-.||+|+. ++.|+..|.++|....+++++..   .+++++++++.|.++|.+|||+|.+.  |+.+. .+ ..++..+
T Consensus         4 ~a~Rp~tl~~s~~pv~lG~alA~~~~~~f~~~~---~ll~li~~l~~q~~~N~~Ndy~D~~~G~D~~~~-~~-~~~~~~~   78 (285)
T TIGR02235         4 AAIKPPLYSVAVMPILVGTAVAWGQGGVFHLDR---FALFLIAAILILAWINLTNDVFDSDTGIDRFKL-HS-IVNLTGS   78 (285)
T ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHcCCCcCHHH---HHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccc-CC-cccccCc
Confidence            468999999 99999999999976545666443   45678999999999999999999875  77432 11 2222235


Q ss_pred             HHHHHHHHHHHHHHH----HHHHHHhchHHHHHHHHHHHHHHhHhcCCCCccccccccccchhHHHHhhhhhhhhHHHHH
Q 022622           81 MGTGLAITLTLSLTS----LAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIH  156 (294)
Q Consensus        81 ~~~a~~~~~~~~~l~----l~l~~~l~~~~~~~~~~~~~~~~~~Ys~~~pp~r~Kr~~~~~~~~v~~~~g~~~~~g~~~~  156 (294)
                      +++.......+..++    +.+....+++.+.++. ++++.++.||.  ||+++|++++ ||..++..+|.+...+.   
T Consensus        79 ~~~v~~~~~~~~~ia~~~g~~L~~~~~~~~l~lg~-~g~~~~~~Yt~--gP~~l~y~gL-GE~~v~l~~G~l~v~g~---  151 (285)
T TIGR02235        79 RSLVFWLANFFLLIGLVGIAALSWRWQITVLALVG-LCCFLGYLYQG--PPFRLGYQGL-GEPICWLCFGPLAIAAA---  151 (285)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-HHHHHHHhhcC--CCcccCCCCc-cHHHHHHHHHHHHHHHH---
Confidence            677776665555444    3445555665555554 68889999995  9999999998 89765444555544432   


Q ss_pred             HHHHhhcCCccCcHHHHHHHHHHHHHHHHHHHHccCCChhhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHHHh
Q 022622          157 FQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGAS  236 (294)
Q Consensus       157 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~a~~l~~~~~~~~~~~~~~~~~~  236 (294)
                        .+++.+.  +++..+...+..++.+.+...+||++|+|+|++.|+||+|+++|+|++.++...+...+|+..+.....
T Consensus       152 --~yvqt~~--~~~~~~l~sl~~gl~~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~~v~~  227 (285)
T TIGR02235       152 --LYAQSQS--FSLIPWKASILVGLATTLILFCSHFHQVEDDLAHGKRSPVVRLGTKLAAKIVPWVISLSYVVLLIAVIG  227 (285)
T ss_pred             --HHHhCCc--CcHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCcceeheecHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence              3444443  344444445566677888899999999999999999999999999999999999998899877765555


Q ss_pred             hhhhH
Q 022622          237 SSFQL  241 (294)
Q Consensus       237 ~~~~~  241 (294)
                      ...+|
T Consensus       228 ~~~p~  232 (285)
T TIGR02235       228 GFLPW  232 (285)
T ss_pred             hhhHH
Confidence            44444

This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.

>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]

Probab=99.96  E-value=9e-27  Score=208.10  Aligned_cols=223  Identities=17%  Similarity=0.215  Sum_probs=163.0

Q ss_pred             ccccchHHH-HHHHHHHHhHhhccccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhchh--hhhhcCC-----CCCcc
Q 022622            4 FFLFPNSMY-QIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVE--IDKVNKP-----DLPLA   75 (294)
Q Consensus         4 ~~~Rp~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~~Nd~~D~~--~D~~n~~-----~Rpl~   75 (294)
                      +..||||+. ++.|+..|+++|......++   ++-.+++++++++++..+|..|||.|.+  .|.+ +|     ++-+.
T Consensus        13 ~~~rP~Tl~aai~Pv~~G~a~A~~~~~~f~---~~~~ll~Li~~~~iq~~vN~~NdY~D~~KG~D~~-g~~~~~~~g~I~   88 (303)
T COG1575          13 ELARPKTLPAAIAPVIVGTALAFWYGKSFN---LLVALLALIAAILLQILVNLANDYFDYKKGTDTH-GPDRLKQSGLIV   88 (303)
T ss_pred             HhcCccchHHHHHHHHHHHHHHHHHccchH---HHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCC-CCccccccceee
Confidence            578999999 99999999999976644454   3446779999999999999999999987  4643 33     44455


Q ss_pred             CCccCHHHHHHHHHHHHHH----HHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCccccccccccchhHHHHhhhhhhhh
Q 022622           76 SGDLSMGTGLAITLTLSLT----SLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQF  151 (294)
Q Consensus        76 sG~is~~~a~~~~~~~~~l----~l~l~~~l~~~~~~~~~~~~~~~~~~Ys~~~pp~r~Kr~~~~~~~~v~~~~g~~~~~  151 (294)
                      ..+++++..+...+.+...    ++.+....|+..+.++ .++.+.+++|+.  +|.++++.|+ |++.++..+|.....
T Consensus        89 ~~~~k~~~~l~l~l~~~~g~~llg~~~~~~s~~~~l~lG-~l~~~~g~~YTg--Gp~PlgY~gL-GEi~~~vffG~l~v~  164 (303)
T COG1575          89 RQSMKPALILSLALFLLAGLALLGVILAALSDWLVLLLG-LLCIAAGILYTG--GPFPLGYMGL-GEIFVGVFFGPLIVL  164 (303)
T ss_pred             cccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHheeeecc--CCcCcccCCH-HHHHHHHHHHHHHHH
Confidence            5566666666655554333    3333445566645555 478899999996  8999999998 897554345544333


Q ss_pred             HHHHHHHHHhhcCCccCcHHHHHHHHHHHHHHHHHHHHccCCChhhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHH
Q 022622          152 SFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSV  231 (294)
Q Consensus       152 g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~a~~l~~~~~~~~~~~~~  231 (294)
                      +     ..+++.+..  +...+...+.+...+...+..||+||+|+|+|+|++|+|+++|+++++++...++..+|+..+
T Consensus       165 g-----~~yiqt~~~--~~~~ll~slp~gil~~~Il~aNNirDie~D~~~gk~TLavrLG~~~~~~l~~~l~~~a~l~~~  237 (303)
T COG1575         165 G-----AYYIQTGRL--SWAILLPSLPVGILIANILLANNLRDIEEDIRNGKYTLAVRLGRKNARKLYAALLVVAYLAIV  237 (303)
T ss_pred             H-----HHHHhcccc--hHHHHHHHHHHHHHHHHHHHhcccccchhHHhcCCcceeeeeccHhHHHHHHHHHHHHHHHHH
Confidence            3     234554433  344444455666677788899999999999999999999999999999999999988888887


Q ss_pred             HHHHhhhhhH
Q 022622          232 IVGASSSFQL  241 (294)
Q Consensus       232 ~~~~~~~~~~  241 (294)
                      +........+
T Consensus       238 ~~~i~~~~~~  247 (303)
T COG1575         238 IFVILGLFPV  247 (303)
T ss_pred             HHHHHHhchH
Confidence            6555555554

>PLN02776 prenyltransferase

Probab=99.96  E-value=1.3e-26  Score=212.43  Aligned_cols=258  Identities=16%  Similarity=0.024  Sum_probs=173.6

Q ss_pred             cccchHHH-HHHHHHHHhHhhccccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcC--CCCCccCCccCH
Q 022622            5 FLFPNSMY-QIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK--PDLPLASGDLSM   81 (294)
Q Consensus         5 ~~Rp~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~~Nd~~D~~~D~~n~--~~Rpl~sG~is~   81 (294)
                      ++||+-.. .......|+.+|.+..+++     ..++++.++.+++++++|++||++|+|+|++|+  ++||+|+|++|+
T Consensus         1 L~Kpri~~lv~~ta~~G~~lA~~~~~~~-----~~l~~~~lg~~l~~aaa~~~N~i~DrdiD~~m~RT~~RPLpsGris~   75 (341)
T PLN02776          1 LSKARLSALVVATSGAGFVLGSGEAIDL-----PGLGWTCAGTMLCAASANTLNQVFEVKNDSKMKRTMRRPLPSGRISV   75 (341)
T ss_pred             CCcchhHHHHHHHHHHHHHHhcCCCCCH-----HHHHHHHHHHHHHHHHHHHHHhHHhhhhcccCCCCCCCCCCCCCCCH
Confidence            46787777 6666677788885433332     224567889999999999999999999999866  499999999999


Q ss_pred             HHHHHHHHHHHHHHHHH-HHHhchHHHHHHHHHHHHHHhHhcCCCCccccccccccchhHHHHh-hhhhhhhHHHHHHHH
Q 022622           82 GTGLAITLTLSLTSLAI-ALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTV-FGLVYQFSFFIHFQK  159 (294)
Q Consensus        82 ~~a~~~~~~~~~l~l~l-~~~l~~~~~~~~~~~~~~~~~~Ys~~~pp~r~Kr~~~~~~~~v~~~-~g~~~~~g~~~~~~~  159 (294)
                      ++|+.+++.+.++|+.+ +..+|+.+..++....++....||.      +||++++ |. ++|. .|..-++    +++.
T Consensus        76 ~~A~~~~~~l~~~g~~~l~~~~n~l~~~l~~~~~~ly~~vYt~------lKR~t~~-~~-~lG~~~Ga~ppL----~Gw~  143 (341)
T PLN02776         76 PHAVAWAVVVGAAGVALLAYKTNMLTAGLGAGNILLYAFVYTP------LKQIHPA-NT-WVGAVVGAIPPL----MGWA  143 (341)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh------HccCCch-hH-HHHHHHHHHHHH----HHHH
Confidence            99999999999988854 5668988877775323334678995      7999986 43 4432 3322232    2334


Q ss_pred             HhhcCCccCcHHHHHHHHHHHHHHHHHHHHccCCChhhhHhcCCcccceec--chhhHHHHHHHHHHHHHHHHHHHHHhh
Q 022622          160 YVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKL--GKENVLRLCVYALFFAYGVSVIVGASS  237 (294)
Q Consensus       160 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~--G~~~a~~l~~~~~~~~~~~~~~~~~~~  237 (294)
                      ++.| ..  +...+.+...+.+|+........++|.|||++.|++++|+.-  |+++++.+....+.+..+.++......
T Consensus       144 Avtg-~~--~~~~~~Lf~~~~~Wq~pHf~~la~~~~dDy~~ag~pmlpv~~~~g~~ta~~i~~~~~~l~~~~ll~~~~g~  220 (341)
T PLN02776        144 AASG-QL--DAGAMVLAAALYFWQMPHFMALAYMCRDDYAAGGYRMLSLADATGRRTALVALRNCLYLAPLGFLAYDWGV  220 (341)
T ss_pred             HHcC-CC--CHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCCcccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4444 33  445555566667899888888888999999999999999965  466665554333333222222222111


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhccCCC-hhhHHHHHHHHHHHHHH
Q 022622          238 SFQLVKLVSIIGHSTLAFLLWLRAQTVDLSN-NASTYSFYMFIWKLFYA  285 (294)
Q Consensus       238 ~~~~~~~~~~~~~~i~~~~l~~~~~~~d~~~-~~~~~~f~~~i~~~~~~  285 (294)
                       .++  ..+..+..+.+..+.++++..+.+| +...+.|+.+++++...
T Consensus       221 -~~~--~~~~~a~~l~~~~l~~~~~~~~~~~~~~ar~~F~~Sl~yL~~l  266 (341)
T PLN02776        221 -TSS--PFALEAALLTAYLAASAASFYREPTNANARKMFHGSLLYLPAF  266 (341)
T ss_pred             -hhH--HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH
Confidence             112  1233444444556777777775544 44667788888887654

>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]

Probab=99.96  E-value=2.9e-27  Score=210.75  Aligned_cols=188  Identities=30%  Similarity=0.411  Sum_probs=135.8

Q ss_pred             HHHHHHHHhHhhccccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhh--cCCCCCccCCccCHHHHHHHHHH
Q 022622           13 QIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKV--NKPDLPLASGDLSMGTGLAITLT   90 (294)
Q Consensus        13 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~~Nd~~D~~~D~~--n~~~Rpl~sG~is~~~a~~~~~~   90 (294)
                      .+.+++.|.+.+.+.  ..++.   ......++.++.+.++|.+||+.|+|+|+.  |+|+||+++|+++++++...+..
T Consensus         4 ~~~~~l~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~~~~~~~~~~~   78 (257)
T PF01040_consen    4 SFLPVLAGLALASGG--PFNWP---IFLLGLLAVFLLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRISPRQALIFALI   78 (257)
T ss_pred             HHHHHHHHHHHHHcC--CCCHH---HHHHHHHHHHHHHHHHHHhhChhhhhcCcccccccCcchhHHHHhHHHHHHHHHH
Confidence            455666653334332  23321   234556667799999999999999999999  88999999999999999999999


Q ss_pred             HHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCccccccccccchhHHHHhhhhhhhhHHHHHHHHHhhcCCccCcH
Q 022622           91 LSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITR  170 (294)
Q Consensus        91 ~~~l~l~l~~~l~~~~~~~~~~~~~~~~~~Ys~~~pp~r~Kr~~~~~~~~v~~~~g~~~~~g~~~~~~~~~~g~~~~~~~  170 (294)
                      +.++++.+++..|+..+.+.. ++.+.++.||   ||.|+||++++++.++....+....      ......++.  .+.
T Consensus        79 ~~~l~l~l~~~~~~~~~~~~~-~~~~~~~~Ys---~~~~lk~~~~~~~~~~~~~~~~~~~------~~~~~~~~~--~~~  146 (257)
T PF01040_consen   79 LLLLGLLLALLLGPWFLLILL-LGFLLGLLYS---PPLRLKRRPLWGELVVALVFGLLIL------LGAYAAGGD--PPP  146 (257)
T ss_pred             HHHHHHHHHHhcCchhHHHHH-HHHHHHHHHh---hhhhhcceeccchhhHHHhhhHhhh------hhhhhcCCc--ccH
Confidence            999999998888888777665 5666779999   7889999999888543221221111      112223322  123


Q ss_pred             HHHHHHHHHHHHHHHHHHHccCCChhhhHhcCCcccceecchhhHHH
Q 022622          171 PLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLR  217 (294)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~a~~  217 (294)
                      ..+....+...+.......+|++|+|+|++.|+||+|+++|++++.+
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~D~~~D~~~g~~Tl~v~~G~~~~~~  193 (257)
T PF01040_consen  147 PPFLLAIFFFLLIFAIMFFNDIRDIEGDRKAGRRTLPVLLGEKKARY  193 (257)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCCcchHHHHHHHHHHH
Confidence            33333333345666777888999999999999999999999999977

These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane

>PRK12872 ubiA prenyltransferase; Reviewed

Probab=99.95  E-value=6.8e-27  Score=212.35  Aligned_cols=192  Identities=22%  Similarity=0.252  Sum_probs=131.4

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhchhhhhhcCCCCCccCCccCHHHHHHHHHHHHHHHHHHH-HHhchHHHHHHHHHHHHHH
Q 022622           40 LKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIA-LSLQSPPLIFGLIVWFLLG  118 (294)
Q Consensus        40 ~~~~l~~~l~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~-~~l~~~~~~~~~~~~~~~~  118 (294)
                      ....++.++.+.++|++||+.|+|+|++|+|+||.++++...+.+.....+...++..+. ...|+..+.+++ ++.+.+
T Consensus        39 ~~~~~~~~~~~~~~~~~N~~~D~~~D~~n~~~R~~~s~~~~~~~~~~l~~i~~~~~~~l~~~~~~~~~~~~~~-~~~~~~  117 (285)
T PRK12872         39 WLLLLITFLIAAAVYIINYLTDLEEDIINKPERVVFSETKAYGLFLLLNVLGLYLGAYLLAVIGGPKFALIFI-IPLILG  117 (285)
T ss_pred             HHHHHHHHHHHHHHHHhhhhcCCchhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH-HHHHHH
Confidence            346777889999999999999999999999999988544333333333333334444432 234777666664 567789


Q ss_pred             hHhcCCCCcc-ccccccccchhHHHHhhhhhhhhHHHHHHHHHhhcCCccCcHHHHHHHHHHHHHHHHHHHHccCCChhh
Q 022622          119 TAYSVDLPFL-RWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDG  197 (294)
Q Consensus       119 ~~Ys~~~pp~-r~Kr~~~~~~~~v~~~~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~  197 (294)
                      +.||.  ||. ++||.|.++|.++...+|....++     ..+..+.  .++...+....+...+....+.++|++|+|+
T Consensus       118 ~~Ys~--~~~~~lk~~p~~~~~~vg~~~g~~~~~~-----~~~~~~~--~~~~~~~~~~~~~fl~~~~~~~~~d~~D~e~  188 (285)
T PRK12872        118 ILYSV--FFKRRLKRIPLFKNLVVSLLWALSPLIL-----GVYYYQL--TIFSLLLLYAVFIFLKSFIREIVFDIKDIEG  188 (285)
T ss_pred             HHHhC--hhHHHHhhhhhHhhHHHHHHHHHHHHHH-----HHHhccc--ccchHHHHHHHHHHHHHHHHHHHHhcccchh
Confidence            99996  555 579999889975533343332221     1122222  1233333334445566778899999999999


Q ss_pred             hHhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 022622          198 DKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQL  241 (294)
Q Consensus       198 D~~~G~~Tl~v~~G~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~  241 (294)
                      |+++|+||+|+++|+|+++++...+....++..+........++
T Consensus       189 D~~~G~~Tlpv~lG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (285)
T PRK12872        189 DRKSGLKTLPIVLGKERTLKFLLILNLLFLILLILGVYTGLLPL  232 (285)
T ss_pred             HHHcCCcccchhcchHHHHHHHHHHHHHHHHHHHHHHHHhHhhH
Confidence            99999999999999999999998888877777765544433333

>PRK12875 ubiA prenyltransferase; Reviewed

Probab=99.95  E-value=4.8e-26  Score=205.51  Aligned_cols=210  Identities=20%  Similarity=0.224  Sum_probs=132.0

Q ss_pred             ccccchHHH-HHHHHHHHhHhhccccCC-CChHHHHHHHHHHHHH--HHHHHHHhhhhhhhchhhhhhcCCCCCccCCcc
Q 022622            4 FFLFPNSMY-QIVGITSIAILPLQSFAD-LTPKYFMEFLKALLSA--VLMNNYVGTVNQVADVEIDKVNKPDLPLASGDL   79 (294)
Q Consensus         4 ~~~Rp~~~~-~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~l~~--~l~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~i   79 (294)
                      |.+||+++. ++.|+..|.++|....++ +++..+     .+++.  +..+.+.|.+||++|+|+||.|+|.+.  ++.+
T Consensus        13 ~l~RP~~~~~~~~p~l~G~~lA~~~~~~~~~~~~~-----~ll~~~~i~~Nl~~y~iND~~D~D~Dr~~prk~~--~r~~   85 (282)
T PRK12875         13 VLSRPRFWLYLAGPVVVGVAYAADSVADLFSPAAV-----ALFAYFLFPANVFLYGVNDVFDADTDELNPKKDR--EREV   85 (282)
T ss_pred             HHhCccchHHHHHHHHHHHHHHhccCcccccHHHH-----HHHHHHHHHHHHHHhcchhhhhhhccccCCCccC--CCCc
Confidence            678999999 999999999998654332 343221     22222  223445566899999999999986543  1112


Q ss_pred             C--HHHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCccccccccccchhHHHHhhhhhhhhHHHHH
Q 022622           80 S--MGTGLA-ITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIH  156 (294)
Q Consensus        80 s--~~~a~~-~~~~~~~l~l~l~~~l~~~~~~~~~~~~~~~~~~Ys~~~pp~r~Kr~~~~~~~~v~~~~g~~~~~g~~~~  156 (294)
                      .  .+.+.. .......+++.+....++...... +.+++..+.||.  ||+|+|++|+. +..+.+.. . .+.   ..
T Consensus        86 ~~s~~~~~~~~~~l~~~l~l~l~~~~~~~~~~~l-l~~i~~~~~YS~--pP~rlk~~p~~-~~~~~g~~-~-~~~---~~  156 (282)
T PRK12875         86 RYRGDRRVLVAVALSGALALAFLLVLPPAAWPAL-LAFLVLSVEYSA--PPLRFKTTPVL-DSLSNGLY-I-LPG---VA  156 (282)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHcC--CCccchhccHH-HHHHHHHH-H-HHH---HH
Confidence            2  122221 222233444444444444333333 356788999995  99999999984 43332221 1 111   01


Q ss_pred             HHHHhhcCCccCcHHHHHHHHHHHHHHHHHHHHccCCChhhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHH
Q 022622          157 FQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVG  234 (294)
Q Consensus       157 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~a~~l~~~~~~~~~~~~~~~~  234 (294)
                       ..+++.+.  .++..+  .....+|+.+++++||+||+|+|++.|+||+|+++|+|++.+++..++.++....+..+
T Consensus       157 -~y~~~tg~--~~~~~l--~~a~~l~~~~~~~in~i~Die~D~~aGi~Tlav~lG~~~a~~~~~~~~~~a~~~~~~~~  229 (282)
T PRK12875        157 -AYALVSGS--LPPLLA--VAGGWLWAMGMHTFSAIPDIEPDRAAGIRTTATVLGERRTYAYCAACWLLAAAAFAAVD  229 (282)
T ss_pred             -HHHHHcCC--CcHHHH--HHHHHHHHHHHHHHHhccCHHHHHHcCCccchhhccHhhHHHHHHHHHHHHHHHHHHHH
Confidence             12233332  233332  23345788899999999999999999999999999999999888877776655555443

>PRK13591 ubiA prenyltransferase; Provisional

Probab=99.95  E-value=3.8e-26  Score=206.04  Aligned_cols=180  Identities=19%  Similarity=0.149  Sum_probs=127.9

Q ss_pred             HHHHHHHHHHHhhhhhhhchhhhhhcCCCCCccCCccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhc
Q 022622           43 LLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYS  122 (294)
Q Consensus        43 ~l~~~l~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~~~l~~~~~~~~~~~~~~~~~~Ys  122 (294)
                      .+.+.+...++|++||++|+|+|++|||+||.+    +++.+..++.+..++|+.+++..|+..  ++ +++.+.++.||
T Consensus        64 ~~~~~L~~~s~~~iNd~~D~eiD~IN~P~r~~~----s~~~a~~ls~la~llGl~La~~~g~~l--l~-ll~~l~g~lYS  136 (307)
T PRK13591         64 CIAGGLIIYSVYTLDRALDSEEDAVNRSELIGS----NKKIGLLVSLLAFLLGTYILAMDGMLL--LA-FLPFITGYLYS  136 (307)
T ss_pred             HHHHHHHHHHHHHHhhhccchhhhccCcccccc----CHHHHHHHHHHHHHHHHHHHHHHhHHH--HH-HHHHHHHHHhc
Confidence            334456678999999999999999999999986    788899999999999999999888753  33 35777899999


Q ss_pred             CCC--Cc--cccccccccchhHHHHhhhhhhhhHHHHHHHHHhhcCCccCcHHHHHHHHHHHHHHHHHHHHccCCChhhh
Q 022622          123 VDL--PF--LRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGD  198 (294)
Q Consensus       123 ~~~--pp--~r~Kr~~~~~~~~v~~~~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D  198 (294)
                      .++  +|  +|+|+++.+||+.+...+|..+..+    ... ..+   .+ .......++.....++++.+||++|+|+|
T Consensus       137 ~Glk~~P~plklK~~~glGnl~V~i~~G~~i~g~----~g~-~~~---~~-~~~~~i~l~~~~~l~~~~iindirDiEGD  207 (307)
T PRK13591        137 KGIKIGKFALKLKGGLGVKNIVVGITWGGFIAGI----AGS-YCG---SL-IPVGLIFLFFGVKLFINSCVYDFKDVKGD  207 (307)
T ss_pred             CCCCCCCccccccCCCchhHHHHHHHHHHHHHHH----HHh-hhh---hH-HHHHHHHHHHHHHHHHHHHHHHhhhhHhH
Confidence            631  24  4789999889975433233211100    000 011   01 11111111111233577789999999999


Q ss_pred             HhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 022622          199 KQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSS  238 (294)
Q Consensus       199 ~~~G~~Tl~v~~G~~~a~~l~~~~~~~~~~~~~~~~~~~~  238 (294)
                      ++.|+||+|+++|++++.++...+...+++..+.......
T Consensus       208 r~~G~kTLPV~lG~~~A~~l~~~l~~~~~l~li~~~~~g~  247 (307)
T PRK13591        208 TLAGIKTLPVSLGEQKTRNLLLGIHLFSHLVLGIALIFGV  247 (307)
T ss_pred             HHcCCeeEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999998888888877765554433

>PRK13592 ubiA prenyltransferase; Provisional

Probab=99.94  E-value=6.9e-25  Score=196.23  Aligned_cols=178  Identities=13%  Similarity=0.146  Sum_probs=118.5

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhchhhhhhcCCCCCccCCccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Q 022622           38 EFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLL  117 (294)
Q Consensus        38 ~~~~~~l~~~l~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~~~l~~~~~~~~~~~~~~~  117 (294)
                      +.++..+..++..+++|++|||+|+|+||+|+|+||+|||++|+++++.++..+.++++.+....     .... ...+.
T Consensus        47 ~~~l~~~~vf~~~~~gniiNDy~D~EIDrIN~P~RPLPsG~VS~~~A~~~si~L~~~~l~L~~l~-----~i~i-~~~~i  120 (299)
T PRK13592         47 QEFVGVFTVFGFWMILRIADDFKDYETDRRLFPHRALPSGRVKKKDLAIALSFIVAVSVLLNVLF-----MNNV-GWFLF  120 (299)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHhhHHHhhhcCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHH-----HHHH-HHHHH
Confidence            34555666778889999999999999999999999999999999999999888877766665443     1121 23345


Q ss_pred             HhHh-----cCCCCccccccccccchhHHHHhhhhhh--hhHHHHHH-HHHhhcCCccCcHHHHHHHHHHHHHHHHHHHH
Q 022622          118 GTAY-----SVDLPFLRWKTKPFLAGMCMVTVFGLVY--QFSFFIHF-QKYVLGRPVVITRPLIFAAAIISTISAVMSLL  189 (294)
Q Consensus       118 ~~~Y-----s~~~pp~r~Kr~~~~~~~~v~~~~g~~~--~~g~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (294)
                      .+.|     +.     ++||.++.+|+.+....|...  +++.+... .....|.+ ......+.+.+...+.++++|+.
T Consensus       121 ~~lY~~lm~a~-----~~K~~~l~gNl~Va~ltg~~f~~g~~~~~~~fg~~~~g~~-~~~~~~~~l~l~afl~~l~rEI~  194 (299)
T PRK13592        121 LYIYGTLMSFW-----FFKRDKIQNSLPLALVTHNPVMMILNLYTISFVCYKYNLP-LLSLPTVLLAFTMYFPSLIWEVC  194 (299)
T ss_pred             HHHHHHHHHHH-----HHcccCCCcchhhhhhccchhhhchhhhhhhhhhhhcccc-hhhHHHHHHHHHHHHHHHHHHHH
Confidence            5666     64     579999999965422223222  11111100 00011211 01111122222333467799999


Q ss_pred             ccCCChhhhHhcCCcccceecchhhHHHHHHHHHHHHHHH
Q 022622          190 KDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGV  229 (294)
Q Consensus       190 ~~~~D~e~D~~~G~~Tl~v~~G~~~a~~l~~~~~~~~~~~  229 (294)
                      +|++| |||++. .+|+|+++|+|++.+++..+.++..+.
T Consensus       195 KdieD-~gd~~~-~~Tlpi~~G~kkA~~ia~~l~ii~v~~  232 (299)
T PRK13592        195 RKIRA-PKDETE-YVTYSKLFGYKKATRFIEVVTLLDILT  232 (299)
T ss_pred             HhhcC-CccccC-CeeechhccchhHHHHHHHHHHHHHHH
Confidence            99999 888864 999999999999999987776655443

>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=8.3e-22  Score=175.88  Aligned_cols=194  Identities=20%  Similarity=0.236  Sum_probs=138.5

Q ss_pred             ccccchHHH-HHHHHHHHhHhhccccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcCC--CCCccCCccC
Q 022622            4 FFLFPNSMY-QIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKP--DLPLASGDLS   80 (294)
Q Consensus         4 ~~~Rp~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~~Nd~~D~~~D~~n~~--~Rpl~sG~is   80 (294)
                      ++.||+-+. ..+...+|+.+|...  ..++.   ..+...+|..+..+++|++|++.|+|+|++.+|  +||+++|+++
T Consensus        23 ~LtKPrvi~L~~it~~~g~~lA~~~--~~~~~---l~~~~~~g~~L~a~~a~a~N~~~DrDID~~M~RT~~RP~~~G~i~   97 (304)
T COG0109          23 QLTKPRVISLLLITAFAGMLLAPRG--SINPL---LLLLTLLGGALGAGGAGAFNMYIDRDIDALMERTRKRPLVTGLIS   97 (304)
T ss_pred             HHhCCeeeehHHHHHHHHHHHcccc--cccHH---HHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhccCCCCCCCccC
Confidence            678998888 888888889888642  22322   246678899999999999999999999999775  9999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHH-HHhchHHHHHHHHHHHHHHhHhcCCCCccccccccccchhHHHHhhhhhhhhHHHHHHHH
Q 022622           81 MGTGLAITLTLSLTSLAIA-LSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQK  159 (294)
Q Consensus        81 ~~~a~~~~~~~~~l~l~l~-~~l~~~~~~~~~~~~~~~~~~Ys~~~pp~r~Kr~~~~~~~~v~~~~g~~~~~g~~~~~~~  159 (294)
                      ++|++.++.++.++|..+. ...|+.+-.+++..-++.+.+||.+     +||++.. |.++.|+.|..-++    .++.
T Consensus        98 p~~al~fgl~L~~~g~~~l~~~vn~laa~l~~~gi~~Yv~vYT~~-----lKR~T~~-NiviGg~aGa~Ppl----iGwa  167 (304)
T COG0109          98 PREALAFGLVLGVAGFSLLWFLVNLLAAVLGLFGIFFYVVVYTLW-----LKRRTPQ-NIVIGGFAGAMPPL----IGWA  167 (304)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-----ccCCccc-ceeeeecccccccc----ceee
Confidence            9999999999999999877 6778877666665556788999973     6999984 54443333333232    2233


Q ss_pred             HhhcCCccCcHHHHHHHHHHHH----HHHHHHHHccCCChhhhHhcCCcccceecchhhHHHHH
Q 022622          160 YVLGRPVVITRPLIFAAAIIST----ISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLC  219 (294)
Q Consensus       160 ~~~g~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~a~~l~  219 (294)
                      ++.| ..+.+...++...|++.    |.++   ++--+|+   +++|+..+|++-|++.+.+-.
T Consensus       168 Avtg-~~~~~a~~Lf~IiF~WtPpHfwALA---l~~~~DY---~~AgiPMlPvv~G~~~t~~~I  224 (304)
T COG0109         168 AVTG-SISLGAILLFAIIFLWTPPHFWALA---LKYKDDY---KAAGIPMLPVVKGERRTKRQI  224 (304)
T ss_pred             eeeC-CCCchHHHHHHHHHHhccHHHHHHH---HHHHHHH---HHcCCCcccccccHHHHHHHH
Confidence            4545 23333323333444442    3332   2223455   999999999999999886554

>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional

Probab=99.84  E-value=5.6e-19  Score=160.25  Aligned_cols=127  Identities=27%  Similarity=0.404  Sum_probs=97.5

Q ss_pred             ccccchHHH-HHHHHHHHhHhhccccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhc--CCCCCccCCccC
Q 022622            4 FFLFPNSMY-QIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVN--KPDLPLASGDLS   80 (294)
Q Consensus         4 ~~~Rp~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~~Nd~~D~~~D~~n--~~~Rpl~sG~is   80 (294)
                      |++|||.|. ..+.+.. .+++.+. .+.+.  +...++.+++..++++++|++||+.|+|+||+|  ||+||++||++|
T Consensus        16 ~L~RP~~w~~nll~~~~-~~~a~~~-~~~~~--~~~~llafl~~~l~~sa~y~iND~~D~e~Dr~~prk~~RPlasG~is   91 (295)
T PRK12324         16 KLLRPKQWIKNLFVFAA-PIFAGNL-LNPGA--LLKVLLAFVLFCLASSAVYLVNDIRDVEADRLHPTKRNRPIASGVVS   91 (295)
T ss_pred             HHhCchHHHHHHHHHHH-HHHHHhh-cccch--HHHHHHHHHHHHHHHHHHHHHHhHHHHHhhccCCCCCCCCCCCCccC
Confidence            689999999 7776554 3444321 22211  222344556667889999999999999999986  679999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCccccccccccchhH
Q 022622           81 MGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMC  140 (294)
Q Consensus        81 ~~~a~~~~~~~~~l~l~l~~~l~~~~~~~~~~~~~~~~~~Ys~~~pp~r~Kr~~~~~~~~  140 (294)
                      ++++..++.++..+|+.+++.+|+.+..+. ...++..+.||.     ++||++.+++++
T Consensus        92 ~~~A~~~~~~l~~~~l~la~~l~~~~~~~~-~~~~~~~~~Ys~-----~lK~~~~~d~l~  145 (295)
T PRK12324         92 VSLAYILAVVLLVASLALAYLLSPKLALVL-LVYLVLNLAYSF-----KLKHQPVLDVFC  145 (295)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhH-----HhcCCchhhHHH
Confidence            999999999999999999888888766655 356778899996     579999876643

>PRK08238 hypothetical protein; Validated

Probab=99.81  E-value=6.7e-18  Score=162.89  Aligned_cols=179  Identities=25%  Similarity=0.307  Sum_probs=126.7

Q ss_pred             ccccchHHH-HHHHHHHHhHhhccccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhc--CCCCCccCCccC
Q 022622            4 FFLFPNSMY-QIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVN--KPDLPLASGDLS   80 (294)
Q Consensus         4 ~~~Rp~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~~Nd~~D~~~D~~n--~~~Rpl~sG~is   80 (294)
                      |++|||.+. ..+.+. +.+++.+ ..+.+  .+...++.+++..++++++|++||+.|+|+||+|  ||+||++||++|
T Consensus       196 ~l~Rp~q~~kn~l~~~-p~l~a~~-~~~~~--~~~~~~~~f~~~~l~~sa~~~~ND~~D~e~Dr~~~rk~~RPlasG~is  271 (479)
T PRK08238        196 KALRVHQWAKNLLVFV-PLLAAHQ-FGDLQ--ALLAALLAFLAFSLCASAVYILNDLLDLEADRAHPRKRRRPFASGALP  271 (479)
T ss_pred             HHhCCcHHHHHHHHHH-HHHHhcc-cCChH--HHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccCCCCCCCCCCCCCCC
Confidence            689999999 666554 4555532 22222  1233455677777999999999999999999998  579999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCccccccccccchhHHHHhhhhhhhhHHHHHHHHH
Q 022622           81 MGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKY  160 (294)
Q Consensus        81 ~~~a~~~~~~~~~l~l~l~~~l~~~~~~~~~~~~~~~~~~Ys~~~pp~r~Kr~~~~~~~~v~~~~g~~~~~g~~~~~~~~  160 (294)
                      +++|+.++.++.++|+.+++.+|+.+.... +..+++..+||.     ++||+++++++ +++   ...++.+..  +..
T Consensus       272 ~~~A~~~~~~l~~~~~~l~~~l~~~~~~~~-~~~~~~~~~Ys~-----~lKr~~~~~~~-~la---~~~~lr~~~--G~~  339 (479)
T PRK08238        272 IPFGLAAAPLLLLAGLALALALGPAFLLVL-LAYLALTLAYSL-----RLKRKVLVDVL-TLA---ALYTLRIIA--GAA  339 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHhhH-----HhcCCccccch-HHH---HHHHHHHHH--HHH
Confidence            999999999999999999988888655444 467778899996     57999998875 343   222333221  122


Q ss_pred             hhcCCccCcHHHHHHHHHHHHHHHHHHHHccCCChhhhHhcCC
Q 022622          161 VLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGF  203 (294)
Q Consensus       161 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~  203 (294)
                      ..+    .+.+.|++. +..+........|...|.+++++.|.
T Consensus       340 a~~----~~~s~wll~-~~~~~~l~la~~KR~~El~~~~~~~~  377 (479)
T PRK08238        340 AIG----VALSFWLLA-FSMFFFLSLALVKRYTELRRALQRGK  377 (479)
T ss_pred             Hhc----cCHHHHHHH-HHHHHHHHHHHHHhHHHHHHHHhcCC
Confidence            222    133444322 22234446678999999999988886

>KOG4581 consensus Predicted membrane protein [Function unknown]

Probab=99.24  E-value=1.5e-11  Score=105.14  Aligned_cols=217  Identities=16%  Similarity=0.137  Sum_probs=139.5

Q ss_pred             ccchHHH-HHHHHHHHhHhhccc--cCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhchh--hhhhcCCCCCccCCccC
Q 022622            6 LFPNSMY-QIVGITSIAILPLQS--FADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVE--IDKVNKPDLPLASGDLS   80 (294)
Q Consensus         6 ~Rp~~~~-~~~~~~~~~~~a~~~--~~~~~~~~~~~~~~~~l~~~l~~~a~~~~Nd~~D~~--~D~~n~~~Rpl~sG~is   80 (294)
                      .||.++. ++.|..-|.++|.-+  ..|++..   ...++.++.+.+|.++|.+|.|+|..  +|++...+|.++..-+.
T Consensus        68 lrpws~sasl~p~~lgsalayrs~~~~d~~l~---~~fl~a~avlavh~agnlvntyfdf~kgid~kkaddrtlvd~il~  144 (359)
T KOG4581|consen   68 LRPWSFSASLTPTALGSALAYRSHGAEDFRLA---TFFLCAFAVLAVHCAGNLVNTYFDFIKGIDHKKADDRTLVDHILE  144 (359)
T ss_pred             hcccccccccchHhhhhHHHHhhccccchhHH---HHHHHHhhheeeecccchhhhhhhhhhccccccccchhHHHHhcC
Confidence            5899999 888998888888532  2344321   12345666778899999999999964  78877778999998888


Q ss_pred             HHHHHHHHHHHHHHHHH---HHHHhchH---HHHHHHHHHHHHHhHhcCCCCccccccccccchhHHHHhhhhhhhhHHH
Q 022622           81 MGTGLAITLTLSLTSLA---IALSLQSP---PLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFF  154 (294)
Q Consensus        81 ~~~a~~~~~~~~~l~l~---l~~~l~~~---~~~~~~~~~~~~~~~Ys~~~pp~r~Kr~~~~~~~~v~~~~g~~~~~g~~  154 (294)
                      +.+...+...++..|-.   ....+++.   .+.+.-..++--..+|+.   -+.+|+... +.+.++..+|.   +.+.
T Consensus       145 ~~dvv~~g~~ly~~gc~~~~~l~~lsp~klehlaliyfggls~sflytg---gigfkyial-gdliili~fgp---iavl  217 (359)
T KOG4581|consen  145 KDDVVRFGAFLYMAGCGCAACLAVLSPAKLEHLALIYFGGLSGSFLYTG---GIGFKYIAL-GDLIILILFGP---IAVL  217 (359)
T ss_pred             hhheehhhHHHHHhcchHHHHHHhCCHhhhhhhhhhhccCcccceeEec---ccceEEEec-cCEEEEEeech---HHHH
Confidence            88888887777655432   33344442   122222234445677884   345677665 56544333332   2211


Q ss_pred             HHHHHHhhcCCccCcHHHHHHHHHHHHHHHHHHHHccCCChhhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHH
Q 022622          155 IHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVG  234 (294)
Q Consensus       155 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~a~~l~~~~~~~~~~~~~~~~  234 (294)
                        ....++.++..+.+...  ......-+=+..+.|+.+|.|.||++|+-|+++..|+..+-.++..++...|......+
T Consensus       218 --faf~~q~g~l~~~~l~y--aiplalnteailhsnntrd~dndr~agivtlailig~t~s~ily~~llf~py~lf~i~~  293 (359)
T KOG4581|consen  218 --FAFAIQTGHLAIFPLGY--AIPLALNTEAILHSNNTRDADNDREAGIVTLAILIGPTASHILYAMLLFAPYLLFFIFA  293 (359)
T ss_pred             --HHHHHhcCceeEEeehh--eeeeccchHHHhccCCCcccccccccCeEEEEEeecccHHHHHHHHHHHHHHHHHHHHH
Confidence              11223333433322111  11222334466789999999999999999999999999998888878888887665444


Q ss_pred             Hh
Q 022622          235 AS  236 (294)
Q Consensus       235 ~~  236 (294)
                      .-
T Consensus       294 ~~  295 (359)
T KOG4581|consen  294 LH  295 (359)
T ss_pred             HH
Confidence            33

>KOG1380 consensus Heme A farnesyltransferase [Coenzyme transport and metabolism]

Probab=99.23  E-value=8e-12  Score=111.69  Aligned_cols=200  Identities=14%  Similarity=0.124  Sum_probs=122.1

Q ss_pred             ccccchHHH-HHHHHHHHhHhhccccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcCC--CCCccCCccC
Q 022622            4 FFLFPNSMY-QIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKP--DLPLASGDLS   80 (294)
Q Consensus         4 ~~~Rp~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~~Nd~~D~~~D~~n~~--~Rpl~sG~is   80 (294)
                      |+.||+--. ......+|.++|=+. .++     -.++...+|..++.++.|.+||+++.+.|++.+|  +||+++|+++
T Consensus        99 eLsK~rLT~LVV~tt~~gYalap~p-~s~-----~~l~~~tvGT~L~S~sANaiNQ~~E~~~DsqM~RT~~Rplv~g~is  172 (409)
T KOG1380|consen   99 ELSKPRLTMLVVLTTMTGYALAPGP-FSF-----PTLLYTTVGTGLCSASANAINQIFEPPFDSQMKRTQNRPLVRGRIS  172 (409)
T ss_pred             HhcccceEEEEeeeccccccccccC-CCc-----chhHHHhhhhHHHHhhhHhhhhhccCCchhhhHhhcccccccCccC
Confidence            344554333 333334555555332 222     2346678899999999999999999999998765  8999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHHHHhHhcCCCCccccccccccchhHHHHhhhhhhhhHHHHHHHH
Q 022622           81 MGTGLAITLTLSLTSLAIALS-LQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQK  159 (294)
Q Consensus        81 ~~~a~~~~~~~~~l~l~l~~~-l~~~~~~~~~~~~~~~~~~Ys~~~pp~r~Kr~~~~~~~~v~~~~g~~~~~g~~~~~~~  159 (294)
                      +.+|..++.+....|..+..+ .|+....++..-.++...+|+      ++||... .|..+.++.|.+-|+    +++.
T Consensus       173 p~hA~~fAt~~g~~G~slL~~gvNpl~a~Lga~Ni~LY~~vYT------PlKrihi-inTWvGavVGAIPPL----MGwA  241 (409)
T KOG1380|consen  173 PLHAVTFATLTGTAGVSLLAFGVNPLAAALGAGNIFLYAGVYT------PLKRIHI-INTWVGAVVGAIPPL----MGWA  241 (409)
T ss_pred             hHHHHHHHHHhccccceeeeecccHHHHHHhhcchheeecccc------chhhhhh-hhhHHHHHhccCCcc----chhh
Confidence            999999999988888776544 788766666433455677888      3899877 343322223333332    2233


Q ss_pred             HhhcCCccCcHHHHHHHHHHHHHHH--HHHHHccC-CChhhhHhcCCcccceec---chhhHHHHHHHHHHHH
Q 022622          160 YVLGRPVVITRPLIFAAAIISTISA--VMSLLKDI-PDEDGDKQFGFQSISSKL---GKENVLRLCVYALFFA  226 (294)
Q Consensus       160 ~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~D~e~D~~~G~~Tl~v~~---G~~~a~~l~~~~~~~~  226 (294)
                      +..| .  .++..+.+...+..|.+  -..+..++ .|+   ++.|.|.+++.=   -++.+++....++.++
T Consensus       242 Aasg-~--l~~ga~iLa~~LyaWQfPHFnaLS~~lR~DY---s~~GY~Mma~~np~l~rr~alr~s~a~~~L~  308 (409)
T KOG1380|consen  242 AASG-L--LDPGAMILAGILYAWQFPHFNALSWNLRNDY---SKAGYRMMAVTNPGLCRRVALRYSLAFLPLS  308 (409)
T ss_pred             hhcc-C--CCccHHHHHHHHHHhcccchhhhhhhhchhh---hhccEEEEEeeccchhhHHHHHHHHHHhhhh
Confidence            3333 2  23333333333334433  22233333 344   889999998853   3444555555554443

>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]

Probab=94.04  E-value=0.22  Score=45.49  Aligned_cols=47  Identities=17%  Similarity=0.075  Sum_probs=31.7

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhchhhhhhcCCCCCccCCccCHHHHHHHH
Q 022622           40 LKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAIT   88 (294)
Q Consensus        40 ~~~~l~~~l~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~is~~~a~~~~   88 (294)
                      ++.-+.+....+..+..|+..|.|+|++|+|+.+...  +..+.++.+.
T Consensus       179 ll~slp~gil~~~Il~aNNirDie~D~~~gk~TLavr--LG~~~~~~l~  225 (303)
T COG1575         179 LLPSLPVGILIANILLANNLRDIEEDIRNGKYTLAVR--LGRKNARKLY  225 (303)
T ss_pred             HHHHHHHHHHHHHHHHhcccccchhHHhcCCcceeee--eccHhHHHHH
Confidence            3344555566778889999999999999987554332  4445554433

>PRK13591 ubiA prenyltransferase; Provisional

Probab=94.04  E-value=0.52  Score=43.28  Aligned_cols=66  Identities=26%  Similarity=0.336  Sum_probs=37.3

Q ss_pred             hhhhhhchhhhhhcCC-CCCccCCccCHHHHHHHHHHHHHHH---HHHHHHh-----chHHHHHHHHHHHHHHhHhcC
Q 022622           55 TVNQVADVEIDKVNKP-DLPLASGDLSMGTGLAITLTLSLTS---LAIALSL-----QSPPLIFGLIVWFLLGTAYSV  123 (294)
Q Consensus        55 ~~Nd~~D~~~D~~n~~-~Rpl~sG~is~~~a~~~~~~~~~l~---l~l~~~l-----~~~~~~~~~~~~~~~~~~Ys~  123 (294)
                      .+||+.|.|.||.+.. .-|..=|   ++.+..+.....+.+   +.....+     .|.....+++.++...+.|+.
T Consensus       197 iindirDiEGDr~~G~kTLPV~lG---~~~A~~l~~~l~~~~~l~li~~~~~g~l~~~~~~~~~s~~~~l~~~~~~~~  271 (307)
T PRK13591        197 CVYDFKDVKGDTLAGIKTLPVSLG---EQKTRNLLLGIHLFSHLVLGIALIFGVIAFEPIILLYSFVCGLICIQVYSS  271 (307)
T ss_pred             HHHHhhhhHhHHHcCCeeEEEEEC---HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHcC
Confidence            6899999999998763 4455334   344443333322221   1111121     233344455677888899995

>PRK12875 ubiA prenyltransferase; Reviewed

Probab=93.49  E-value=1.3  Score=40.37  Aligned_cols=55  Identities=16%  Similarity=0.045  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHhhhhhhhchhhhhhcC-CCCCccCCccCHHHHHHHHHHHHHHHHHHHHH
Q 022622           44 LSAVLMNNYVGTVNQVADVEIDKVNK-PDLPLASGDLSMGTGLAITLTLSLTSLAIALS  101 (294)
Q Consensus        44 l~~~l~~~a~~~~Nd~~D~~~D~~n~-~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~~~  101 (294)
                      ++..+...+...+||+.|+|.|++.+ +.-|.   ++..+.+..+...+..++..+-..
T Consensus       172 ~a~~l~~~~~~~in~i~Die~D~~aGi~Tlav---~lG~~~a~~~~~~~~~~a~~~~~~  227 (282)
T PRK12875        172 AGGWLWAMGMHTFSAIPDIEPDRAAGIRTTAT---VLGERRTYAYCAACWLLAAAAFAA  227 (282)
T ss_pred             HHHHHHHHHHHHHHhccCHHHHHHcCCccchh---hccHhhHHHHHHHHHHHHHHHHHH
Confidence            33445556668999999999999754 34444   344566666666665555444333

>PRK13105 ubiA prenyltransferase; Reviewed

Probab=93.03  E-value=0.71  Score=41.98  Aligned_cols=58  Identities=17%  Similarity=0.160  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHhhhhhhhchhhhhhcCCCCCccCCccCHHHHHHHHHHHHHHHHHHHHHhc
Q 022622           44 LSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQ  103 (294)
Q Consensus        44 l~~~l~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~~~l~  103 (294)
                      .+..+...+...+||+-|.|.||++.. |.+|. ++.+|.+..++..+..++......++
T Consensus       167 ~~~~~~~~a~~ii~~irDie~Dr~~G~-~Tlpv-~lG~~~a~~~~~~l~~~a~~~~~~~~  224 (282)
T PRK13105        167 AAFFLWGMASHAFGAVQDVVADREAGI-ASIAT-VLGARRTVRLAVGLYAAAAVLMLALP  224 (282)
T ss_pred             HHHHHHHHHHHHHHhCcchHhHHHcCC-ccchH-HhcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344667789999999999998653 33333 45567777777777666655444444

>PRK12872 ubiA prenyltransferase; Reviewed

Probab=92.64  E-value=1  Score=40.70  Aligned_cols=43  Identities=23%  Similarity=0.254  Sum_probs=26.9

Q ss_pred             HHHHHHHHHhhhhhhhchhhhhhcC-CCCCccCCccCHHHHHHHHHH
Q 022622           45 SAVLMNNYVGTVNQVADVEIDKVNK-PDLPLASGDLSMGTGLAITLT   90 (294)
Q Consensus        45 ~~~l~~~a~~~~Nd~~D~~~D~~n~-~~Rpl~sG~is~~~a~~~~~~   90 (294)
                      ..++....-+.+||.-|+|.||+++ +.-|..-|+   +.+......
T Consensus       169 ~~fl~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~---~~t~~~~~~  212 (285)
T PRK12872        169 FIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGK---ERTLKFLLI  212 (285)
T ss_pred             HHHHHHHHHHHHHhcccchhHHHcCCcccchhcch---HHHHHHHHH
Confidence            3334455666889999999999865 455554453   444444333

>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase

Probab=89.86  E-value=2.8  Score=38.15  Aligned_cols=43  Identities=14%  Similarity=0.030  Sum_probs=27.8

Q ss_pred             HHHHHHhhhhhhhchhhhhhcCCCCCccCCccCHHHHHHHHHHHH
Q 022622           48 LMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLS   92 (294)
Q Consensus        48 l~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~~~   92 (294)
                      +...+....||+-|+|+||.+.++ .++- ++.++.+......+.
T Consensus       172 l~~~~iL~~Nn~rD~e~D~~~Gk~-TL~v-~lG~~~a~~l~~~l~  214 (285)
T TIGR02235       172 LATTLILFCSHFHQVEDDLAHGKR-SPVV-RLGTKLAAKIVPWVI  214 (285)
T ss_pred             HHHHHHHHhcCCccchhHHHcCCc-ceeh-eecHHhHHHHHHHHH
Confidence            555677789999999999987642 2222 344566655444433

This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.

>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=89.33  E-value=2.6  Score=38.98  Aligned_cols=49  Identities=16%  Similarity=0.155  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHhhhhhhhchhhhhhcCCCCCccCCccCHHHHHHHHHHHHH
Q 022622           43 LLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSL   93 (294)
Q Consensus        43 ~l~~~l~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~~~~   93 (294)
                      .+...+..+.....||+.|+|.||.+.++ .++. ++.++.+......+..
T Consensus       195 slp~g~l~~~ill~Nn~~D~e~D~~~gk~-TL~v-~lG~~~a~~l~~~l~~  243 (317)
T PRK13387        195 SLPIIFTIANIMLANNLRDLDEDIKNHRY-TLVY-YIGREKGVVLFAILFY  243 (317)
T ss_pred             HHHHHHHHHHHHHhcCCccchhHHHcCCe-eeee-eEcHHhHHHHHHHHHH
Confidence            34444555666899999999999987642 2222 3445666554444433

>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=88.99  E-value=3.1  Score=38.22  Aligned_cols=41  Identities=15%  Similarity=0.055  Sum_probs=26.0

Q ss_pred             HHHHHHhhhhhhhchhhhhhcCCCCCccCCccCHHHHHHHHHH
Q 022622           48 LMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLT   90 (294)
Q Consensus        48 l~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~   90 (294)
                      +..+.....||+-|+|+||.+.++ .++- ++.++.+......
T Consensus       185 ll~~~IL~~Nn~rD~e~D~~~Gk~-TL~v-~lG~~~a~~ly~~  225 (304)
T PRK07419        185 LATSLILFCSHFHQVEDDLAAGKR-SPIV-RLGTKRGAQLLPW  225 (304)
T ss_pred             HHHHHHHHHcCCcchhhHHHcCCc-ceee-eechHhHHHHHHH
Confidence            445677789999999999987642 2222 3445555544333

>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial

Probab=88.89  E-value=8.1  Score=34.95  Aligned_cols=36  Identities=25%  Similarity=0.176  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHHhhhhhhhchhhhhhc-CCCCCccCCc
Q 022622           43 LLSAVLMNNYVGTVNQVADVEIDKVN-KPDLPLASGD   78 (294)
Q Consensus        43 ~l~~~l~~~a~~~~Nd~~D~~~D~~n-~~~Rpl~sG~   78 (294)
                      .++.++-...-..+|++.|+|.|++. .|.-|..-|+
T Consensus       166 ~~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~  202 (281)
T TIGR01474       166 YLANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGD  202 (281)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhh
Confidence            44555666677789999999999975 4666766664

A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.

>PLN02922 prenyltransferase

Probab=88.87  E-value=2.8  Score=38.78  Aligned_cols=45  Identities=13%  Similarity=0.115  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHhhhhhhhchhhhhhcCCCCCccCCccCHHHHHHHHHH
Q 022622           44 LSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLT   90 (294)
Q Consensus        44 l~~~l~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~   90 (294)
                      +..-+..+.....||+.|+|.||+++++....  ++.++.+......
T Consensus       195 lp~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v--~lG~~~a~~l~~~  239 (315)
T PLN02922        195 VLVGLTTTLILFCSHFHQIDGDRAVGKMSPLV--RLGTEKGSRVVRW  239 (315)
T ss_pred             HHHHHHHHHHHHHccCcchhhHHHcCccceee--EEChHHHHHHHHH
Confidence            33345556778899999999999987532222  2445555544333

>PRK13592 ubiA prenyltransferase; Provisional

Probab=88.25  E-value=4.2  Score=37.24  Aligned_cols=42  Identities=14%  Similarity=0.300  Sum_probs=26.3

Q ss_pred             HHHHHHHHHccCCChhhhHhcCCcccceecc---hhhHHHHHHHHH
Q 022622          181 TISAVMSLLKDIPDEDGDKQFGFQSISSKLG---KENVLRLCVYAL  223 (294)
Q Consensus       181 ~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G---~~~a~~l~~~~~  223 (294)
                      +.+.+-.++||+.|+|-||.+ +..=|.-=|   ++.++..+..+.
T Consensus        57 ~~~~~gniiNDy~D~EIDrIN-~P~RPLPsG~VS~~~A~~~si~L~  101 (299)
T PRK13592         57 GFWMILRIADDFKDYETDRRL-FPHRALPSGRVKKKDLAIALSFIV  101 (299)
T ss_pred             HHHHHhHHHHHHhhHHHhhhc-CCCCCCCcCCCCHHHHHHHHHHHH
Confidence            344566799999999999665 444444334   455555554443

>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

Probab=88.01  E-value=8.8  Score=34.81  Aligned_cols=33  Identities=12%  Similarity=0.109  Sum_probs=24.1

Q ss_pred             HHHHHHHHHccCCChhhhHhcCC-cccceecchh
Q 022622          181 TISAVMSLLKDIPDEDGDKQFGF-QSISSKLGKE  213 (294)
Q Consensus       181 ~~~~~~~~~~~~~D~e~D~~~G~-~Tl~v~~G~~  213 (294)
                      ....+...+||+.|+|-||++-+ |.=|.-=|+-
T Consensus        58 ~~~~ag~~iND~~D~eiD~~n~rt~~RPl~sG~v   91 (289)
T COG0382          58 LARSAGYVINDLADREIDRINPRTKNRPLPSGRV   91 (289)
T ss_pred             HHHHHhHHHHHHhhhhccCCCCCccCCCCCCCCC
Confidence            34456678999999999999876 4555555554

>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase

Probab=88.00  E-value=7  Score=35.33  Aligned_cols=34  Identities=18%  Similarity=0.253  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHhhhhhhhchhhhhhcC-CCCCccCC
Q 022622           44 LSAVLMNNYVGTVNQVADVEIDKVNK-PDLPLASG   77 (294)
Q Consensus        44 l~~~l~~~a~~~~Nd~~D~~~D~~n~-~~Rpl~sG   77 (294)
                      +..++-+..-..+||..|+|.|++.+ |.-|..-|
T Consensus       165 ~~~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G  199 (282)
T TIGR01475       165 IGVGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFG  199 (282)
T ss_pred             HHHHHHHHHHHHHHHHhhHHhHHHcCCCchHHHhc
Confidence            34445556667899999999998654 56666556

A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.

>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=87.89  E-value=9.3  Score=34.58  Aligned_cols=37  Identities=11%  Similarity=0.047  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHHhhhhhhhchhhhhhcC-CCCCccCCc
Q 022622           42 ALLSAVLMNNYVGTVNQVADVEIDKVNK-PDLPLASGD   78 (294)
Q Consensus        42 ~~l~~~l~~~a~~~~Nd~~D~~~D~~n~-~~Rpl~sG~   78 (294)
                      ..+..++....-...|++.|+|.|++++ |.-|..-|+
T Consensus       170 l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~  207 (285)
T PRK12847        170 LYIGCIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGN  207 (285)
T ss_pred             HHHHHHHHHHHHHHHHHhccHhhHHHcCCchhHHHhcc
Confidence            3444556666667899999999999764 556655554

>PRK12884 ubiA prenyltransferase; Reviewed

Probab=87.78  E-value=4.7  Score=36.26  Aligned_cols=31  Identities=19%  Similarity=0.071  Sum_probs=24.8

Q ss_pred             HHHHHHHHHccCCChhhhHhcCCcccceecch
Q 022622          181 TISAVMSLLKDIPDEDGDKQFGFQSISSKLGK  212 (294)
Q Consensus       181 ~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~  212 (294)
                      +...+-..+||+.|.|.|++. +++=|..-|+
T Consensus        48 l~~~a~~~~Nd~~D~~~D~~~-r~~Rpl~~G~   78 (279)
T PRK12884         48 FASGSANALNDYFDYEVDRIN-RPDRPIPSGR   78 (279)
T ss_pred             HHHHHHHHHHhhhhHhhhhcc-CCCCCCCCCC
Confidence            344566789999999999998 6777777775

>PLN00012 chlorophyll synthetase; Provisional

Probab=87.60  E-value=4.8  Score=38.17  Aligned_cols=31  Identities=26%  Similarity=0.307  Sum_probs=23.0

Q ss_pred             HHHHHHhhhhhhhchhhhhhc-CCCCCccCCc
Q 022622           48 LMNNYVGTVNQVADVEIDKVN-KPDLPLASGD   78 (294)
Q Consensus        48 l~~~a~~~~Nd~~D~~~D~~n-~~~Rpl~sG~   78 (294)
                      +...+....||+-|+|.|++. ++.-|..-|+
T Consensus       263 l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~  294 (375)
T PLN00012        263 IAGLGIAIVNDFKSIEGDRALGLQSLPVAFGV  294 (375)
T ss_pred             HHHHHHHHHhhhcchhhHHHcCCcccceeech
Confidence            455667789999999999975 4566665554

>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed

Probab=87.52  E-value=4.4  Score=37.37  Aligned_cols=30  Identities=27%  Similarity=0.280  Sum_probs=21.8

Q ss_pred             HHHHHhhhhhhhchhhhhhc-CCCCCccCCc
Q 022622           49 MNNYVGTVNQVADVEIDKVN-KPDLPLASGD   78 (294)
Q Consensus        49 ~~~a~~~~Nd~~D~~~D~~n-~~~Rpl~sG~   78 (294)
                      ...+....||+.|+|.||++ +|.-|..-|+
T Consensus       201 ~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~  231 (314)
T PRK07566        201 GAHGIMTLNDFKSVEGDRQLGLRSLPVVFGE  231 (314)
T ss_pred             HHHHHHHHHHHHHhHhHHHcCCcccceeEcH
Confidence            34556789999999999975 4556665554

>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase

Probab=87.35  E-value=4.9  Score=36.54  Aligned_cols=42  Identities=21%  Similarity=0.175  Sum_probs=26.3

Q ss_pred             HHHHHHhhhhhhhchhhhhhcCCCCCccCCccCHHHHHHHHHHH
Q 022622           48 LMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTL   91 (294)
Q Consensus        48 l~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~~   91 (294)
                      +...+....||+.|+|.|+.+.++. ++. ++.++.+......+
T Consensus       175 ~l~~~il~~Nn~~D~~~D~~~Gk~T-l~v-~lG~~~a~~l~~~l  216 (284)
T TIGR00751       175 LLACAVLNINNLRDIPTDARAGKNT-LAV-RLGDARTRMYHQGL  216 (284)
T ss_pred             HHHHHHHHHcCcccchhHHHcCCEe-ehh-hcchHhHHHHHHHH
Confidence            3446666799999999999876432 222 34456665544433

This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.

>PRK12871 ubiA prenyltransferase; Reviewed

Probab=87.19  E-value=9.9  Score=34.79  Aligned_cols=35  Identities=14%  Similarity=0.059  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHhhhhhhhchhhhhhcC-CCCCccCCc
Q 022622           44 LSAVLMNNYVGTVNQVADVEIDKVNK-PDLPLASGD   78 (294)
Q Consensus        44 l~~~l~~~a~~~~Nd~~D~~~D~~n~-~~Rpl~sG~   78 (294)
                      +..++-+..-...||+.|+|.|++++ |.-|+.-|+
T Consensus       182 ~~~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~  217 (297)
T PRK12871        182 VFFYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGM  217 (297)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHcCCeeeeeeech
Confidence            44455566777999999999999754 567776665

>PRK12888 ubiA prenyltransferase; Reviewed

Probab=87.00  E-value=14  Score=33.56  Aligned_cols=35  Identities=20%  Similarity=0.191  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHhhhhhhhchhhhhhcC-CCCCccCCc
Q 022622           44 LSAVLMNNYVGTVNQVADVEIDKVNK-PDLPLASGD   78 (294)
Q Consensus        44 l~~~l~~~a~~~~Nd~~D~~~D~~n~-~~Rpl~sG~   78 (294)
                      +...+-..+-..+|++.|+|.|++.+ |.-|..-|+
T Consensus       166 ~~~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~  201 (284)
T PRK12888        166 LAVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGV  201 (284)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCc
Confidence            34445556677999999999999754 566655554

>PRK12886 ubiA prenyltransferase; Reviewed

Probab=86.79  E-value=3.9  Score=37.29  Aligned_cols=33  Identities=15%  Similarity=0.236  Sum_probs=22.8

Q ss_pred             HHHHHHHHhhhhhhhchhhhhhc-CCCCCccCCc
Q 022622           46 AVLMNNYVGTVNQVADVEIDKVN-KPDLPLASGD   78 (294)
Q Consensus        46 ~~l~~~a~~~~Nd~~D~~~D~~n-~~~Rpl~sG~   78 (294)
                      .++-+.+-..+|++.|+|.|++. .|.-|..-|+
T Consensus       171 ~~lw~~~~~~~~a~~D~e~D~~aGi~slpv~~G~  204 (291)
T PRK12886        171 VLFWVAGFDILYALQDLEFDRKEGLHSIPAKLGV  204 (291)
T ss_pred             HHHHHHHHHHHHHhccHHhHHHcCCcCcchhcCc
Confidence            33444555578889999999864 4667776665

>PRK13106 ubiA prenyltransferase; Reviewed

Probab=86.48  E-value=3.5  Score=37.85  Aligned_cols=35  Identities=17%  Similarity=0.316  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHHhhhhhhhchhhhhhcC-CCCCccCC
Q 022622           43 LLSAVLMNNYVGTVNQVADVEIDKVNK-PDLPLASG   77 (294)
Q Consensus        43 ~l~~~l~~~a~~~~Nd~~D~~~D~~n~-~~Rpl~sG   77 (294)
                      .++.++-..+-.++|+..|+|.|++.+ +.-|+.=|
T Consensus       183 ~~~~~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G  218 (300)
T PRK13106        183 VIGTILWAAGFDLYNHIPDAEFDREMGLHSFAVVLG  218 (300)
T ss_pred             HHHHHHHHHHHHHHHHccchhhHHHCCCCccHHHHh
Confidence            445556666677999999999998654 56666445

>PRK12882 ubiA prenyltransferase; Reviewed

Probab=85.67  E-value=5  Score=36.11  Aligned_cols=32  Identities=25%  Similarity=0.334  Sum_probs=22.5

Q ss_pred             HHHHHHHhhhhhhhchhhhhhcC-CCCCccCCc
Q 022622           47 VLMNNYVGTVNQVADVEIDKVNK-PDLPLASGD   78 (294)
Q Consensus        47 ~l~~~a~~~~Nd~~D~~~D~~n~-~~Rpl~sG~   78 (294)
                      ++...+-..+||+.|+|.|++++ |.-|..-|+
T Consensus       167 fl~~~~~~~~~~~~D~e~D~~~G~~tlpv~~G~  199 (276)
T PRK12882        167 ALATLAREIIKDVEDIEGDRAEGARTLPILIGV  199 (276)
T ss_pred             HHHHHHHHHHhhhhhhhhHHHcCCccccHHhhH
Confidence            34445667999999999999765 455554443

>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

Probab=84.85  E-value=4.9  Score=36.29  Aligned_cols=31  Identities=23%  Similarity=0.282  Sum_probs=21.9

Q ss_pred             HHHHHHHhhhhhhhchhhhhhcC-CCCCccCC
Q 022622           47 VLMNNYVGTVNQVADVEIDKVNK-PDLPLASG   77 (294)
Q Consensus        47 ~l~~~a~~~~Nd~~D~~~D~~n~-~~Rpl~sG   77 (294)
                      ++.+.+-..+||+.|+|.|++++ |.-|..-|
T Consensus       164 f~~~~~~~~~~~~~D~~~D~~~G~~tlpv~~G  195 (279)
T PRK09573        164 FFSTWSREIVKDIEDIEGDLKENVITLPIKYG  195 (279)
T ss_pred             HHHHHHHHHHhhhhhhhhHHHCCCccccHHhh
Confidence            34445566789999999999754 56666555

>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated

Probab=84.52  E-value=7.3  Score=35.33  Aligned_cols=43  Identities=23%  Similarity=0.256  Sum_probs=26.6

Q ss_pred             HHHHHHHHhhhhhhhchhhhhhcCC-CCCccCCccCHHHHHHHHHHH
Q 022622           46 AVLMNNYVGTVNQVADVEIDKVNKP-DLPLASGDLSMGTGLAITLTL   91 (294)
Q Consensus        46 ~~l~~~a~~~~Nd~~D~~~D~~n~~-~Rpl~sG~is~~~a~~~~~~~   91 (294)
                      ..+........||+.|+|.||.+++ .-|.   ++.++.+......+
T Consensus       177 ~~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v---~lG~~~a~~~~~~l  220 (293)
T PRK06080        177 CGLLIGAVLLANNIRDIETDRENGKNTLAV---RLGDKNARRLHAAL  220 (293)
T ss_pred             HHHHHHHHHHhcCCCcchhHHHcCCeeEEe---eECcHhHHHHHHHH
Confidence            3445566678999999999998653 3333   23345544444333

>PRK12392 bacteriochlorophyll c synthase; Provisional

Probab=84.45  E-value=4.5  Score=37.68  Aligned_cols=33  Identities=24%  Similarity=0.200  Sum_probs=23.0

Q ss_pred             HHHHHHHHHhhhhhhhchhhhhhcC-CCCCccCC
Q 022622           45 SAVLMNNYVGTVNQVADVEIDKVNK-PDLPLASG   77 (294)
Q Consensus        45 ~~~l~~~a~~~~Nd~~D~~~D~~n~-~~Rpl~sG   77 (294)
                      ...+...+-..+||+.|+|.|+... +.-|+.=|
T Consensus       188 ~~~l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G  221 (331)
T PRK12392        188 LNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIG  221 (331)
T ss_pred             HHHHHHHHHHHHHcccchhhHHHcCCeeeEeEEc
Confidence            3445556667899999999999754 45555434

>TIGR02056 ChlG chlorophyll synthase, ChlG

Probab=84.20  E-value=8.6  Score=35.29  Aligned_cols=39  Identities=28%  Similarity=0.325  Sum_probs=25.2

Q ss_pred             HHHHHHhhhhhhhchhhhhhcC-CCCCccCCccCHHHHHHHHH
Q 022622           48 LMNNYVGTVNQVADVEIDKVNK-PDLPLASGDLSMGTGLAITL   89 (294)
Q Consensus        48 l~~~a~~~~Nd~~D~~~D~~n~-~~Rpl~sG~is~~~a~~~~~   89 (294)
                      +...+....||+.|+|.|+++. +.-|..-|   ++.+.....
T Consensus       194 l~~~~i~~~n~~~D~e~D~~~G~~Tlpv~lG---~~~a~~~~~  233 (306)
T TIGR02056       194 IAGLGIAIVNDFKSVEGDRALGLQSLPVAFG---IETAAWICV  233 (306)
T ss_pred             HHHHHHHHHHHccChHHHHHcCCcCcchhcC---hHHHHHHHH
Confidence            3455666899999999999765 44454334   444444333

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).

>PRK13595 ubiA prenyltransferase; Provisional

Probab=82.87  E-value=14  Score=33.74  Aligned_cols=23  Identities=17%  Similarity=0.234  Sum_probs=18.6

Q ss_pred             HHHHHHHHccCCChhhhHhcCCc
Q 022622          182 ISAVMSLLKDIPDEDGDKQFGFQ  204 (294)
Q Consensus       182 ~~~~~~~~~~~~D~e~D~~~G~~  204 (294)
                      .+.....+||+-|+|.|+++-+|
T Consensus        59 ~n~~~~giND~fD~eiDa~Npr~   81 (292)
T PRK13595         59 FNLLIYGLNDLADRETDAASPRK   81 (292)
T ss_pred             HHHHHHHHHhhhhhhhhccCCCC
Confidence            45566789999999999977655

>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase

Probab=82.78  E-value=9.3  Score=34.49  Aligned_cols=36  Identities=22%  Similarity=0.238  Sum_probs=23.7

Q ss_pred             HHHHHhhhhhhhchhhhhhcC-CCCCccCCccCHHHHHHH
Q 022622           49 MNNYVGTVNQVADVEIDKVNK-PDLPLASGDLSMGTGLAI   87 (294)
Q Consensus        49 ~~~a~~~~Nd~~D~~~D~~n~-~~Rpl~sG~is~~~a~~~   87 (294)
                      ...+....||+.|+|.||+++ +.-|..-|   .|.+..+
T Consensus       173 ~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG---~~~a~~l  209 (283)
T TIGR01476       173 GAHGIMTLNDFKSVEGDRQLGLRSLPVMIG---VKRAAIV  209 (283)
T ss_pred             HHHHHHHHHhccchhhHHHcCCcCcceEEc---HHHHHHH
Confidence            345567899999999999864 44555444   3444443

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.

>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed

Probab=82.09  E-value=30  Score=31.29  Aligned_cols=36  Identities=17%  Similarity=0.111  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHHhhhhhhhchhhhhhcC-CCCCccCCc
Q 022622           43 LLSAVLMNNYVGTVNQVADVEIDKVNK-PDLPLASGD   78 (294)
Q Consensus        43 ~l~~~l~~~a~~~~Nd~~D~~~D~~n~-~~Rpl~sG~   78 (294)
                      .+..++-...-...|++.|+|.|++.+ |.-|..-|.
T Consensus       168 ~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~  204 (282)
T PRK12848        168 FLANILWTVAYDTQYAMVDRDDDLKIGIKSTAILFGR  204 (282)
T ss_pred             HHHHHHHHHHHHHHHHhccHhhHHHcCCccccHHhcc
Confidence            344445555666889999999999755 566665554

>PLN02809 4-hydroxybenzoate nonaprenyltransferase

Probab=82.08  E-value=9.3  Score=34.85  Aligned_cols=33  Identities=18%  Similarity=0.136  Sum_probs=24.9

Q ss_pred             HHHHHHHHHccCCChhhhHhcCC-cccceecchh
Q 022622          181 TISAVMSLLKDIPDEDGDKQFGF-QSISSKLGKE  213 (294)
Q Consensus       181 ~~~~~~~~~~~~~D~e~D~~~G~-~Tl~v~~G~~  213 (294)
                      +...+-..+||+.|.|-|++..| |+=|..=|+-
T Consensus        56 ~~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL~sG~i   89 (289)
T PLN02809         56 LLRGAGCTINDLLDRDIDKKVERTKLRPIASGAL   89 (289)
T ss_pred             HHHHHHHHHHhhHHhccccCCCCCCCCCCCCCCC
Confidence            34456679999999999998766 5677766753

>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed

Probab=81.51  E-value=8.2  Score=34.75  Aligned_cols=31  Identities=29%  Similarity=0.441  Sum_probs=21.8

Q ss_pred             HHHHHHhhhhhhhchhhhhhcC-CCCCccCCc
Q 022622           48 LMNNYVGTVNQVADVEIDKVNK-PDLPLASGD   78 (294)
Q Consensus        48 l~~~a~~~~Nd~~D~~~D~~n~-~~Rpl~sG~   78 (294)
                      +...+-...||+.|+|.|++.+ |.-|..-|+
T Consensus       165 l~~~~~~~~~~~~D~e~D~~~G~~Tlpv~~G~  196 (277)
T PRK12883        165 LVNVAREIMKDIEDIEGDKAKGAKTLPIIIGK  196 (277)
T ss_pred             HHHHHHHHHhhhhhhccHHHcCCcCcChHhcH
Confidence            3444566789999999999754 566665553

>PRK12876 ubiA prenyltransferase; Reviewed

Probab=80.53  E-value=39  Score=31.06  Aligned_cols=33  Identities=15%  Similarity=0.249  Sum_probs=21.4

Q ss_pred             HHHHHHHHhhhhhhhchhhhhhcC-CCCCccCCc
Q 022622           46 AVLMNNYVGTVNQVADVEIDKVNK-PDLPLASGD   78 (294)
Q Consensus        46 ~~l~~~a~~~~Nd~~D~~~D~~n~-~~Rpl~sG~   78 (294)
                      ..+...+-.++.+..|+|.||+++ +.-|..-|.
T Consensus       181 ~~~~~~g~DiiYa~qD~e~D~~~Gl~Slpv~fG~  214 (300)
T PRK12876        181 FGMIIAANDIIYAIQDLEFDRKEGLFSIPARFGE  214 (300)
T ss_pred             HHHHHHHHHHHHHHcCHhhHHHcCCccchHHHCc
Confidence            333334445778899999999765 455654454

>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]

Probab=80.52  E-value=12  Score=32.74  Aligned_cols=34  Identities=18%  Similarity=0.170  Sum_probs=23.2

Q ss_pred             HHHHHHHHHccCCChhhhHhc-CCcccceecchhh
Q 022622          181 TISAVMSLLKDIPDEDGDKQF-GFQSISSKLGKEN  214 (294)
Q Consensus       181 ~~~~~~~~~~~~~D~e~D~~~-G~~Tl~v~~G~~~  214 (294)
                      ........+||+.|.|.|+.. +++.-|..-|+-+
T Consensus        34 ~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~   68 (257)
T PF01040_consen   34 LLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRIS   68 (257)
T ss_pred             HHHHHHHHhhChhhhhcCcccccccCcchhHHHHh
Confidence            345566789999999999996 3344455444443

These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00