Citrus Sinensis ID: 022636

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290----
Protein Sequence
MSSPAEYYHSLPPICKAYGTLCVAVATVCSLGLLDLSILALEYKLVFSKFQVWRLITNFFFLGTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGHLYYFLTVLHPLATGKNLLKTPKWVYPYFYWFLRVKNYAAPSNPPGHSAGCVKPNIIRDIFPLSTQARAHTHTHTHTHTQKLVARWRIGAPAINRAQPERTTGVAFRGRSYRLSD
Secondary Structure (PSIPRED)
cccHHHHHHcccHHHHHHHHHHHHHHHHHHcccccccEEEEEHHHHHHHccEEEEEEEEEccccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccEEEEEEEEccccHHHHHHHHHHHHHHccccHHHHHccHHHHHHHHHHHHccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHcccHHHHHHHHHHHHHHHHHHcccccccEEEEcHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccEEEEEEEEEEccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccEEEcccEEccc
Coil and Loop (DISEMBL)
msspaeyyhslppickAYGTLCVAVATVCSLGLLDLSILALEYKLVFSKFQVWRLITNFFFLGTFSINFGIRLLMIARYgvnlekgpferrtADFLWMMIFGALSLLVLSAIPIFRSYFLGISLVFMLVYVWSrefpnsqinIYGLVTLKAFYLPWAMLALDVifgsplvpdLLGIIAGHLYYFLTVLhplatgknllktpkwvypYFYWFLRvknyaapsnppghsagcvkpniirdifplstqarahththththTQKLVARWRigapainraqperttgvafrgrsyrlsd
Flexible Loop (DISEMBL)
MSSPAEYYHSLPPICKAYGTLCVAVATVCSLGLLDLSILALEYKLVFSKFQVWRLITNFFFLGTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGHLYYFLTVLHPLATGKNLLKTPKWVYPYFYWFLRVKNYAAPSNPPGHSAGCVKPNIIRDIFPLSTQARAHTHthththtqklvaRWRIGApainraqperttgvafrgrsyrlsd
Low Complexity Region (SEG)
MSSPAEYYHSLPPICKAYGTLCVAVATVCSlglldlsilalEYKLVFSKFQVWRLITNFFFLGTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGHLYYFLTVLHPLATGKNLLKTPKWVYPYFYWFLRVKNYAAPSNPPGHSAGCVKPNIIRDIFPLSTQARAhththththtQKLVARWRIGAPAINRAQPERTTGVAFRGRSYRLSD
Disordered region (IsUnstruct)
******YYHSLPPICKAYGTLCVAVATVCSLGLLDLSILALEYKLVFSKFQVWRLITNFFFLGTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGHLYYFLTVLHPLATGKNLLKTPKWVYPYFYWFLRVKNYAAP*****HSAGCVKPNIIRDIFPLSTQARAHTHTHTHTHTQKLVARWRIGAPAIN*********************
Disordered Region (DISOPRED)
*SSPAEYYHSLPPICKAYGTLCVAVATVCSLGLLDLSILALEYKLVFSKFQVWRLITNFFFLGTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGHLYYFLTVLHPLATGKNLLKTPKWVYPYFYWFL***************************************************************************RS*R***
Disordered Region (DISEMBL)
********HSLPPICKAYGTLCVAVATVCSLGLLDLSILALEYKLVFSKFQVWRLITNFFFLGTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGHLYYFLTVLHPLATGKNLLKTPKWVYPYFYWFLRVKNYAAPSNPPGHSAGCVKPNIIRDIFPLSTQAR*************LVARWRIGAPAINRAQPERTTGVAFRGRSYRLSD
Disordered Region (DISPRO)
*SSPAEYYHSLPPICKAYGTLCVAVATVCSLGLLDLSILALEYKLVFSKFQVWRLITNFFFLGTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGHLYYFLTVLHPLATGKNLLKTPKWVYPYFYWFLRVKNYAAPSNPPGHSAGC****************************************************V*FR***YRL**
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSPAEYYHSLPPICKAYGTLCVAVATVCSLGLLDLSILALEYKLVFSKFQVWRLITNFFFLGTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGHLYYFLTVLHPLATGKNLLKTPKWVYPYFYWFLRVKNYAAPSNPPGHSAGCVKPNIIRDIFPLSTQARAHTHTHTHTHTQKLVARWRIGAPAINRAQPERTTGVAFRGRSYRLSD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	294	2.2.26 [Sep-21-2011]
Q8VZU9	266	Derlin-1 OS=Arabidopsis t	yes	no	0.693	0.766	0.774	6e-87
Q06397	242	Derlin-1 OS=Oryza sativa	yes	no	0.782	0.950	0.673	4e-84
Q4G2J6	243	Derlin-1.1 OS=Zea mays GN	N/A	no	0.785	0.950	0.665	3e-81
Q4G2J5	243	Derlin-1.2 OS=Zea mays GN	N/A	no	0.697	0.843	0.721	4e-80
Q54NN1	254	Probable derlin-2 homolog	yes	no	0.693	0.803	0.414	1e-37
Q4G2J4	249	Derlin-2.1 OS=Zea mays GN	N/A	no	0.748	0.883	0.371	2e-35
Q4G2J3	249	Derlin-2.2 OS=Zea mays GN	N/A	no	0.748	0.883	0.371	2e-35
Q851X7	249	Derlin-2 OS=Oryza sativa	no	no	0.748	0.883	0.371	3e-35
Q8BNI4	239	Derlin-2 OS=Mus musculus	yes	no	0.653	0.803	0.395	5e-34
Q5RC74	239	Derlin-2 OS=Pongo abelii	yes	no	0.653	0.803	0.395	7e-34

>sp|Q8VZU9|DERL1_ARATH Derlin-1 OS=Arabidopsis thaliana GN=DER1 PE=2 SV=1

 Score =  320 bits (821), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 158/204 (77%), Positives = 176/204 (86%)

Query: 1   MSSPAEYYHSLPPICKAYGTLCVAVATVCSLGLLDLSILALEYKLVFSKFQVWRLITNFF 60
           MSSP E+Y+SLPPI KAYGTLC        LGL+    +AL  +LV  +FQ+WRLITN F
Sbjct: 1   MSSPGEFYNSLPPITKAYGTLCFFTTVATQLGLVAPVHIALIPELVLKQFQIWRLITNLF 60

Query: 61  FLGTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFL 120
           FLG FSINFGIRLLMIARYGV LEKGPFERRTADFLWMMIFG+ +LLVLS IP F + FL
Sbjct: 61  FLGGFSINFGIRLLMIARYGVQLEKGPFERRTADFLWMMIFGSFTLLVLSVIPFFWTPFL 120

Query: 121 GISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGH 180
           G+SLVFML+Y+WSREFPN+ I++YGLVTLKAFYLPWAMLALDVIFGSP++PDLLGIIAGH
Sbjct: 121 GVSLVFMLLYLWSREFPNANISLYGLVTLKAFYLPWAMLALDVIFGSPIMPDLLGIIAGH 180

Query: 181 LYYFLTVLHPLATGKNLLKTPKWV 204
           LYYFLTVLHPLATGKN LKTPKWV
Sbjct: 181 LYYFLTVLHPLATGKNYLKTPKWV 204

May be involved in the degradation process of specific misfolded endoplasmic reticulum (ER) luminal proteins.
Arabidopsis thaliana (taxid: 3702)

>sp|Q06397|DERL1_ORYSJ Derlin-1 OS=Oryza sativa subsp. japonica GN=DER1 PE=2 SV=2

 Score =  311 bits (797), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 155/230 (67%), Positives = 177/230 (76%)

Query: 1   MSSPAEYYHSLPPICKAYGTLCVAVATVCSLGLLDLSILALEYKLVFSKFQVWRLITNFF 60
           MSSPAEYY+SLPPI KAYGTLC     +C L +L+   LAL Y  VF KFQ+WRL T+FF
Sbjct: 1   MSSPAEYYNSLPPISKAYGTLCFFATVLCQLQILNPPFLALYYPFVFKKFQIWRLFTSFF 60

Query: 61  FLGTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFL 120
           FLG FSINFGIRLLMIARYGV LEKG FE+RTADFLWMMIFGA+SLL LSAIP    YFL
Sbjct: 61  FLGKFSINFGIRLLMIARYGVQLEKGAFEKRTADFLWMMIFGAISLLALSAIPFLDIYFL 120

Query: 121 GISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGH 180
           G+ +V ML+YVWSRE+PNSQI++YGLV L++FYLPWAML LDVIFGS ++P LLGI+ GH
Sbjct: 121 GVPMVSMLLYVWSREYPNSQISMYGLVQLRSFYLPWAMLGLDVIFGSEILPGLLGILVGH 180

Query: 181 LYYFLTVLHPLATGKNLLKTPKWVYPYFYWFLRVKNYAAPSNPPGHSAGC 230
            YYFL+VLHPLATGKN LKTP WV+     F       AP  P   + G 
Sbjct: 181 TYYFLSVLHPLATGKNYLKTPMWVHKIVARFRIGVQANAPVRPAAANTGS 230

May be involved in the degradation process of specific misfolded endoplasmic reticulum (ER) luminal proteins.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q4G2J6|DER11_MAIZE Derlin-1.1 OS=Zea mays GN=DER1.1 PE=2 SV=2

 Score =  301 bits (772), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 155/233 (66%), Positives = 179/233 (76%), Gaps = 2/233 (0%)

Query: 1   MSSPAEYYHSLPPICKAYGTLCVAVATVCSLGLLDLSILALEYKLVFSKFQVWRLITNFF 60
           MSSPAEYY SLPPI KAYGTLC     +  L +L    L L+Y LVF KF++WRL+T+FF
Sbjct: 1   MSSPAEYYKSLPPISKAYGTLCFFTTVLVQLQILHPLFLYLDYPLVFKKFEIWRLLTSFF 60

Query: 61  FLGTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFL 120
           FL  FS+ FGIRLLMIARYGV LEKG F++RTADFLWMMIFGA+SLLVLS IP+F S+FL
Sbjct: 61  FLAPFSMKFGIRLLMIARYGVMLEKGAFDKRTADFLWMMIFGAISLLVLSIIPLFNSFFL 120

Query: 121 GISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGH 180
           GI +V ML+YVWSRE PN+QINIYGLV L++FYLPWAML LDVIFGS L+P LLGI+ GH
Sbjct: 121 GIPMVSMLLYVWSRENPNAQINIYGLVQLRSFYLPWAMLLLDVIFGSSLMPGLLGIMVGH 180

Query: 181 LYYFLTVLHPLATGKNLLKTPKWVYPYFYWFLRVKNYAAPSNPP--GHSAGCV 231
           LYYF  VLHPLATGK+ LKTPKWV+     F       +P  PP  G+S   V
Sbjct: 181 LYYFFAVLHPLATGKSYLKTPKWVHKIVARFRIGMQANSPVRPPANGNSGSGV 233

May be involved in the degradation process of specific misfolded endoplasmic reticulum (ER) luminal proteins.

Zea mays (taxid: 4577)

>sp|Q4G2J5|DER12_MAIZE Derlin-1.2 OS=Zea mays GN=DER1.2 PE=2 SV=1

 Score =  298 bits (762), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 148/205 (72%), Positives = 167/205 (81%)

Query: 1   MSSPAEYYHSLPPICKAYGTLCVAVATVCSLGLLDLSILALEYKLVFSKFQVWRLITNFF 60
           MSSPAEYY SLPPI KAYGTLC     +  L +L+   L L Y  VF KF+VWR+ T+FF
Sbjct: 1   MSSPAEYYKSLPPISKAYGTLCFFTTVLVRLHILNPLFLYLYYPRVFKKFEVWRIFTSFF 60

Query: 61  FLGTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFL 120
           FLG FSINFGIRLLMIARYGV LEKG F++RTADFLWMMIFGA+SLLVLS IP   +Y L
Sbjct: 61  FLGPFSINFGIRLLMIARYGVMLEKGAFDKRTADFLWMMIFGAISLLVLSVIPQLNTYVL 120

Query: 121 GISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGH 180
           G+ +V MLVYVWSRE PN+QINIYG++ LKAFYLPW ML LDVIFGSPL+P LLGI+ GH
Sbjct: 121 GLPMVSMLVYVWSRENPNAQINIYGILQLKAFYLPWVMLLLDVIFGSPLMPGLLGIMVGH 180

Query: 181 LYYFLTVLHPLATGKNLLKTPKWVY 205
           LYY+  VLHPLATGKN LKTPKWV+
Sbjct: 181 LYYYFAVLHPLATGKNYLKTPKWVH 205

May be involved in the degradation process of specific misfolded endoplasmic reticulum (ER) luminal proteins.

Zea mays (taxid: 4577)

>sp|Q54NN1|DERL2_DICDI Probable derlin-2 homolog OS=Dictyostelium discoideum GN=derl2 PE=3 SV=1

 Score =  156 bits (395), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 87/210 (41%), Positives = 122/210 (58%), Gaps = 6/210 (2%)

Query: 1   MSSPAE-YYHSLPPICKAYGTLCVAVATVCSLGLLDLSILALEYKLVFSKFQVWRLITNF 59
           M+ P E +Y +LP + K Y T CV  +    LGL+    L L + LVF K++ WRL TNF
Sbjct: 1   MAQPFEDWYKNLPIVTKIYMTGCVVTSVSVYLGLVGPLRLYLNFPLVFGKYEFWRLFTNF 60

Query: 60  FFLGTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIF---- 115
           FF     +NF   +  + R+   LE+  F  R+AD+L+M IFG+  LL++ A   +    
Sbjct: 61  FFYDEIGMNFFFHMYFLVRHSRLLEESSFRGRSADYLFMWIFGSFLLLIMDAFLFYTKIV 120

Query: 116 -RSYFLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLL 174
            +  FL  S+ FM++YVWSR  PN  I+  GL T  A YLPW +L +  +F   L  DLL
Sbjct: 121 TKVLFLAPSIAFMVIYVWSRRNPNMHISFLGLFTFSAPYLPWVILIMGYLFNHDLTTDLL 180

Query: 175 GIIAGHLYYFLTVLHPLATGKNLLKTPKWV 204
           G +AGH YYFL   +PL + + LLKTP ++
Sbjct: 181 GAVAGHAYYFLEDAYPLISNRRLLKTPGFL 210

May be involved in the degradation process of specific misfolded endoplasmic reticulum (ER) luminal proteins.

Dictyostelium discoideum (taxid: 44689)

>sp|Q4G2J4|DER21_MAIZE Derlin-2.1 OS=Zea mays GN=DER2.1 PE=2 SV=2

 Score =  149 bits (377), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 87/234 (37%), Positives = 124/234 (52%), Gaps = 14/234 (5%)

Query: 6   EYYHSLPPICKAYGTLCVAVATVCSLGLLDLSILALEYKLVFSKFQVWRLITNFFFLGTF 65
           E+Y  +P I ++Y T  V     C+L ++    L L  KLV   +++WRL+TNF +    
Sbjct: 7   EWYRQMPIITRSYLTAAVVTTVGCTLEIISPYHLYLNPKLVVQHYEIWRLVTNFLYFRKM 66

Query: 66  SINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSL----LVLSAIPIF-----R 116
            ++F   +  +ARY   LE+  F  RTADF +M++FGA  L    L+   IP       R
Sbjct: 67  DLDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLTSIVLIGGMIPYISETFAR 126

Query: 117 SYFLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGI 176
             FL  SL FM+VYVWS+  P   ++  GL T  A YLPW +L   ++ GS    DLLG+
Sbjct: 127 ILFLSNSLTFMMVYVWSKHNPFIHMSFLGLFTFTAAYLPWVLLGFSILVGSSTWVDLLGM 186

Query: 177 IAGHLYYFLTVLHPLATGKNLLKTPKWVYPYFYWFLRVKNYAAPSNPPGHSAGC 230
           IAGH+YYFL  ++P  TG+  LKTP ++   F       +    + PP    G 
Sbjct: 187 IAGHVYYFLEDVYPRMTGRRPLKTPSFIKALF-----ADDNVVVAQPPNAGIGA 235

May be involved in the degradation process of specific misfolded endoplasmic reticulum (ER) luminal proteins.

Zea mays (taxid: 4577)

>sp|Q4G2J3|DER22_MAIZE Derlin-2.2 OS=Zea mays GN=DER2.2 PE=2 SV=1

 Score =  149 bits (376), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 87/234 (37%), Positives = 124/234 (52%), Gaps = 14/234 (5%)

Query: 6   EYYHSLPPICKAYGTLCVAVATVCSLGLLDLSILALEYKLVFSKFQVWRLITNFFFLGTF 65
           E+Y  +P I ++Y T  V     C+L ++    L L  KLV   +++WRL+TNF +    
Sbjct: 7   EWYRQMPIITRSYLTAAVVTTVGCTLEIISPYHLYLNPKLVVQHYEIWRLVTNFLYFRKM 66

Query: 66  SINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSL----LVLSAIPIF-----R 116
            ++F   +  +ARY   LE+  F  RTADF +M++FGA  L    L+   IP       R
Sbjct: 67  DLDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLTGIVLIGGMIPYISETFAR 126

Query: 117 SYFLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGI 176
             FL  SL FM+VYVWS+  P   ++  GL T  A YLPW +L   ++ GS    DLLG+
Sbjct: 127 ILFLSNSLTFMMVYVWSKHNPFIHMSFLGLFTFTAAYLPWVLLGFSILVGSSTWVDLLGM 186

Query: 177 IAGHLYYFLTVLHPLATGKNLLKTPKWVYPYFYWFLRVKNYAAPSNPPGHSAGC 230
           IAGH+YYFL  ++P  TG+  LKTP ++   F       +    + PP    G 
Sbjct: 187 IAGHVYYFLEDVYPRMTGRRPLKTPSFIKALF-----ADDNVVVAQPPNAGIGA 235

May be involved in the degradation process of specific misfolded endoplasmic reticulum (ER) luminal proteins.

Zea mays (taxid: 4577)

>sp|Q851X7|DERL2_ORYSJ Derlin-2 OS=Oryza sativa subsp. japonica GN=DER2 PE=2 SV=1

 Score =  149 bits (375), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 87/234 (37%), Positives = 124/234 (52%), Gaps = 14/234 (5%)

Query: 6   EYYHSLPPICKAYGTLCVAVATVCSLGLLDLSILALEYKLVFSKFQVWRLITNFFFLGTF 65
           E+Y  +P I ++Y T  V     C+L ++    L L  KLV   +++WRL+TNF +    
Sbjct: 7   EWYRQMPIITRSYLTAAVVTTVGCTLEIISPYHLYLNPKLVVQHYEIWRLVTNFLYFRKM 66

Query: 66  SINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSL----LVLSAIPIF-----R 116
            ++F   +  +ARY   LE+  F  RTADF +M++FGA  L    L+   IP       R
Sbjct: 67  DLDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLTGIVLIGGMIPYISETFAR 126

Query: 117 SYFLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGI 176
             FL  SL FM+VYVWS+  P   ++  GL T  A YLPW +L   ++ GS    DLLG+
Sbjct: 127 ILFLSNSLTFMMVYVWSKHNPFIHMSFLGLFTFTAAYLPWVLLGFSILVGSSTWVDLLGM 186

Query: 177 IAGHLYYFLTVLHPLATGKNLLKTPKWVYPYFYWFLRVKNYAAPSNPPGHSAGC 230
           IAGH+YYFL  ++P  TG+  LKTP ++   F       +    + PP    G 
Sbjct: 187 IAGHVYYFLEDVYPRMTGRRPLKTPSFIKALF-----ADDNVVVARPPNAGLGA 235

May be involved in the degradation process of specific misfolded endoplasmic reticulum (ER) luminal proteins.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8BNI4|DERL2_MOUSE Derlin-2 OS=Mus musculus GN=Derl2 PE=2 SV=2

 Score =  145 bits (365), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 78/197 (39%), Positives = 114/197 (57%), Gaps = 5/197 (2%)

Query: 8   YHSLPPICKAYGTLCVAVATVCSLGLLDLSILALEYKLVFSKFQVWRLITNFFFLGTFSI 67
           Y  +PP+ +AY T CV       L L+    L    +L+F  FQ+WRLITNF F G    
Sbjct: 10  YLQIPPVSRAYTTACVLTTAAVQLELITPFQLYFNPELIFKHFQIWRLITNFLFFGPVGF 69

Query: 68  NFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRS-YFLGISLVF 126
           NF   ++ + RY   LE+G F  RTADF++M +FG     +++   +F S  FLG +   
Sbjct: 70  NFLFNMIFLYRYCRMLEEGSFRGRTADFVFMFLFGG---FLMTLFGLFVSLVFLGQAFTI 126

Query: 127 MLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGHLYYFLT 186
           MLVYVWSR  P  ++N +GL+  +A +LPW ++   ++ G+ ++ DLLGI  GH+Y+FL 
Sbjct: 127 MLVYVWSRRNPYVRMNFFGLLNFQAPFLPWVLMGFSLLLGNSIIVDLLGIAVGHIYFFLE 186

Query: 187 VLHPLATGK-NLLKTPK 202
            + P   G   +LKTP 
Sbjct: 187 DIFPNQPGGIRILKTPS 203

Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal glycoproteins, but not that of misfolded nonglycoproteins. May act by forming a channel that allows the retrotranslocation of misfolded glycoproteins into the cytosol where they are ubiquitinated and degraded by the proteasome. May mediate the interaction between VCP and the degradation substrate.

Mus musculus (taxid: 10090)

>sp|Q5RC74|DERL2_PONAB Derlin-2 OS=Pongo abelii GN=DERL2 PE=2 SV=1

 Score =  144 bits (363), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 78/197 (39%), Positives = 114/197 (57%), Gaps = 5/197 (2%)

Query: 8   YHSLPPICKAYGTLCVAVATVCSLGLLDLSILALEYKLVFSKFQVWRLITNFFFLGTFSI 67
           Y  +PP+ +AY T CV       L L+    L    +L+F  FQ+WRLITNF F G    
Sbjct: 10  YLQIPPVSRAYTTACVLTTAAVQLELITPFQLYFNPELIFKHFQIWRLITNFLFFGPVGF 69

Query: 68  NFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRS-YFLGISLVF 126
           NF   ++ + RY   LE+G F  RTADF++M +FG     +++   +F S  FLG +   
Sbjct: 70  NFLFNMIFLYRYCRMLEEGSFRGRTADFVFMFLFGG---FLMTLFGLFVSLVFLGQAFTI 126

Query: 127 MLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGHLYYFLT 186
           MLVYVWSR  P  ++N +GL+  +A +LPW ++   ++ G+ ++ DLLGI  GH+Y+FL 
Sbjct: 127 MLVYVWSRRNPYVRMNFFGLLNFQAPFLPWVLMGFSLLLGNSIIVDLLGIAVGHIYFFLE 186

Query: 187 VLHPLATGK-NLLKTPK 202
            + P   G   +LKTP 
Sbjct: 187 DVFPNQPGGIRILKTPS 203

Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal glycoproteins, but not that of misfolded nonglycoproteins. May act by forming a channel that allows the retrotranslocation of misfolded glycoproteins into the cytosol where they are ubiquitinated and degraded by the proteasome. May mediate the interaction between VCP and the degradation substrate.

Pongo abelii (taxid: 9601)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	294
224091361	249	predicted protein [Populus trichocarpa]	0.846	1.0	0.656	3e-94
449435794	242	PREDICTED: derlin-1-like [Cucumis sativu	0.812	0.987	0.637	6e-94
255546275	206	Derlin-3, putative [Ricinus communis] gi	0.700	1.0	0.820	2e-91
225429398	240	PREDICTED: derlin-1 [Vitis vinifera] gi|	0.816	1.0	0.608	1e-88
356513179	246	PREDICTED: derlin-1-like [Glycine max]	0.833	0.995	0.610	8e-88
356523830	246	PREDICTED: derlin-1-like [Glycine max]	0.833	0.995	0.610	7e-87
297803112	266	hypothetical protein ARALYDRAFT_491823 [	0.693	0.766	0.779	9e-86
357520809	245	Derlin-1 [Medicago truncatula] gi|355524	0.829	0.995	0.604	3e-85
22329014	266	derlin-1 [Arabidopsis thaliana] gi|75161	0.693	0.766	0.774	4e-85
357520811	204	Derlin-1 [Medicago truncatula] gi|355524	0.690	0.995	0.783	2e-84

>gi|224091361|ref|XP_002309232.1| predicted protein [Populus trichocarpa] gi|222855208|gb|EEE92755.1| predicted protein [Populus trichocarpa]

 Score =  351 bits (900), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 193/294 (65%), Positives = 205/294 (69%), Gaps = 45/294 (15%)

Query: 1   MSSPAEYYHSLPPICKAYGTLCVAVATVCSLGLLDLSILALEYKLVFSKFQVWRLITNFF 60
           MSSPAEYY SLPPI KAYGTLC+ + T    GLL L  +AL YK VFS FQVWRLIT FF
Sbjct: 1   MSSPAEYYKSLPPISKAYGTLCLFLTTAVQFGLLYLPDIALMYKPVFSSFQVWRLITTFF 60

Query: 61  FLGTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFL 120
           FLG FSINFGIRLLMIARYGV LEKGPFERRTADFLWMMIFGALSLLVLSAIPIF S FL
Sbjct: 61  FLGNFSINFGIRLLMIARYGVQLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFWSPFL 120

Query: 121 GISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGH 180
           GISLVFML+YVWSREFPN+QINIYGLVTLKAFYLPWAMLALDVIFG+PLVPDLLGIIAGH
Sbjct: 121 GISLVFMLLYVWSREFPNAQINIYGLVTLKAFYLPWAMLALDVIFGAPLVPDLLGIIAGH 180

Query: 181 LYYFLTVLHPLATGKNLLKTPKWVYPYFYWFLRVKNYAAPSNPPGHSAGCVKPNIIRDIF 240
           LYYFLTVLHPLATG  LL+TP+WV                                    
Sbjct: 181 LYYFLTVLHPLATGNILLRTPRWVN----------------------------------- 205

Query: 241 PLSTQARAHTHTHTHTHTQKLVARWRIGAPAINRAQPERTTGVAFRGRSYRLSD 294
            L  + R    T T+   Q          P       + TT  AFRGRSYRL+D
Sbjct: 206 KLVARWRIGAPTPTYNSAQ----------PDRTTQAADGTTSAAFRGRSYRLND 249

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449435794|ref|XP_004135679.1| PREDICTED: derlin-1-like [Cucumis sativus] gi|449489818|ref|XP_004158425.1| PREDICTED: derlin-1-like [Cucumis sativus]

 Score =  350 bits (897), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 188/295 (63%), Positives = 209/295 (70%), Gaps = 56/295 (18%)

Query: 1   MSSPAEYYHSLPPICKAYGTLCVAVATVCSLGLLDLSILALEYKLVFSKFQVWRLITNFF 60
           MSSPAE+Y+SLPPI KAYGTLC    T   LGL D  ++AL+Y LVF  FQVWRL TNFF
Sbjct: 1   MSSPAEFYNSLPPISKAYGTLCFLATTAFQLGLYDPMLIALDYGLVFKHFQVWRLFTNFF 60

Query: 61  FLGTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFL 120
           FLG FSINFGIRLLMIARYGV LE GPF+RRTADFLWMMIFG+L+LLVL+AIPIF+   L
Sbjct: 61  FLGKFSINFGIRLLMIARYGVQLENGPFQRRTADFLWMMIFGSLTLLVLAAIPIFQFPVL 120

Query: 121 GISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGH 180
           GISLVFML+YVWSREFPN+QINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGI+AGH
Sbjct: 121 GISLVFMLLYVWSREFPNAQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGILAGH 180

Query: 181 LYYFLTVLHPLATGKNLLKTPKWVYPYFYWFLRVKNYAAPSNPPGHSAGCVKPNIIRDIF 240
           LYYFLTVLHPLA GKN+L+TP       +W                              
Sbjct: 181 LYYFLTVLHPLAGGKNILRTP-------FW------------------------------ 203

Query: 241 PLSTQARAHTHTHTHTHTQKLVARWRIGAPAINRAQ--PERTTGVAFRGRSYRLS 293
                             Q+LV+RWRIGAP + RA    +R T  AFRGRSYRL+
Sbjct: 204 -----------------IQRLVSRWRIGAPPMQRAAVPDDRGTSGAFRGRSYRLN 241

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255546275|ref|XP_002514197.1| Derlin-3, putative [Ricinus communis] gi|223546653|gb|EEF48151.1| Derlin-3, putative [Ricinus communis]

 Score =  341 bits (875), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 169/206 (82%), Positives = 185/206 (89%)

Query: 1   MSSPAEYYHSLPPICKAYGTLCVAVATVCSLGLLDLSILALEYKLVFSKFQVWRLITNFF 60
           MSSPAEYY+SLPPI KAYGTLC+       LG+ DL  +AL Y+LVFS+FQVWRL TNFF
Sbjct: 1   MSSPAEYYNSLPPITKAYGTLCLFFTAAYQLGVFDLVHIALIYQLVFSRFQVWRLFTNFF 60

Query: 61  FLGTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFL 120
           FLG FSINFGIRLLMIARYGV LEKGPF+RRTADFLWM+IFGALS+L+LSAIP F + FL
Sbjct: 61  FLGKFSINFGIRLLMIARYGVQLEKGPFDRRTADFLWMVIFGALSMLILSAIPFFWTPFL 120

Query: 121 GISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGH 180
           G SLVFML+YVWSREFPN+QI+IYGLVTLKAFYLPW MLALDVIFGSPL+PDLLGIIAGH
Sbjct: 121 GTSLVFMLLYVWSREFPNAQISIYGLVTLKAFYLPWTMLALDVIFGSPLMPDLLGIIAGH 180

Query: 181 LYYFLTVLHPLATGKNLLKTPKWVYP 206
           LYYFLTVLHPLATGK LLKTP+WVYP
Sbjct: 181 LYYFLTVLHPLATGKILLKTPRWVYP 206

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225429398|ref|XP_002275238.1| PREDICTED: derlin-1 [Vitis vinifera] gi|296081591|emb|CBI20596.3| unnamed protein product [Vitis vinifera]

 Score =  332 bits (851), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 179/294 (60%), Positives = 201/294 (68%), Gaps = 54/294 (18%)

Query: 1   MSSPAEYYHSLPPICKAYGTLCVAVATVCSLGLLDLSILALEYKLVFSKFQVWRLITNFF 60
           MS+PAE+Y+SLPPI KAYGT+C+   T   LGL      AL Y+LVF  FQVWRL+TNFF
Sbjct: 1   MSTPAEFYNSLPPISKAYGTMCLVATTAFHLGLFPPMYTALIYELVFKHFQVWRLVTNFF 60

Query: 61  FLGTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFL 120
           FLG FSINFGIRLLMIARYGV LEKG FERRTADFLWMMIFGAL+LLVLSAIP+  + FL
Sbjct: 61  FLGKFSINFGIRLLMIARYGVQLEKGVFERRTADFLWMMIFGALTLLVLSAIPLLWTPFL 120

Query: 121 GISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGH 180
           G+SLVFML+YVWSREFPN+QIN+YGLV LKAFY PWAMLALDVIFGS ++PDLLGI+AGH
Sbjct: 121 GVSLVFMLLYVWSREFPNAQINLYGLVQLKAFYFPWAMLALDVIFGSQILPDLLGIVAGH 180

Query: 181 LYYFLTVLHPLATGKNLLKTPKWVYPYFYWFLRVKNYAAPSNPPGHSAGCVKPNIIRDIF 240
           LYYFLTVLHPL+TGK                                      NI++   
Sbjct: 181 LYYFLTVLHPLSTGK--------------------------------------NILK--- 199

Query: 241 PLSTQARAHTHTHTHTHTQKLVARWRIGAPAINRAQPERTTGVAFRGRSYRLSD 294
                        T     KLVAR+RIG P    AQPER  GVAFRGR YRL+ 
Sbjct: 200 -------------TPRWVHKLVARFRIGYPTTAPAQPERAAGVAFRGRGYRLNG 240

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513179|ref|XP_003525291.1| PREDICTED: derlin-1-like [Glycine max]

 Score =  329 bits (844), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 179/293 (61%), Positives = 197/293 (67%), Gaps = 48/293 (16%)

Query: 1   MSSPAEYYHSLPPICKAYGTLCVAVATVCSLGLLDLSILALEYKLVFSKFQVWRLITNFF 60
           MSSPAE+YHSLPPI KAYGT+C+       LGL   + +AL Y  VF  FQ WRL TN F
Sbjct: 1   MSSPAEFYHSLPPITKAYGTVCLLATATYHLGLDHPAYIALLYDKVFYGFQAWRLFTNLF 60

Query: 61  FLGTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFL 120
           FLG FSINFGIRLLMI RYGV LEKGPF+RRTADFLWMMIFGA +LLVLSAIPIF S FL
Sbjct: 61  FLGPFSINFGIRLLMIVRYGVQLEKGPFDRRTADFLWMMIFGAFALLVLSAIPIFWSPFL 120

Query: 121 GISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGH 180
            + LVFML+YVWSREFPN+QINIYGLV LKAFYLPWAMLALD+IFGSPL+PDLLGIIAGH
Sbjct: 121 AVPLVFMLLYVWSREFPNAQINIYGLVALKAFYLPWAMLALDIIFGSPLIPDLLGIIAGH 180

Query: 181 LYYFLTVLHPLATGKNLLKTPKWVYPYFYWFLRVKNYAAPSNPPGHSAGCVKPNIIRDIF 240
           LYYFLTVLHPLA GKN+LKTP WV+                             + R I 
Sbjct: 181 LYYFLTVLHPLAGGKNILKTPMWVHKL---------------------------VARWII 213

Query: 241 PLSTQARAHTHTHTHTHTQKLVARWRIGAPAINRAQPERTTGVAFRGRSYRLS 293
            +   +R                       A N  Q ER +GVAFRGRSYRL 
Sbjct: 214 GVQPISRGQ---------------------AANDPQQERGSGVAFRGRSYRLG 245

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356523830|ref|XP_003530537.1| PREDICTED: derlin-1-like [Glycine max]

 Score =  326 bits (836), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 180/295 (61%), Positives = 198/295 (67%), Gaps = 50/295 (16%)

Query: 1   MSSPAEYYHSLPPICKAYGTLCVAVATVCSLGLLDLSILALEYKLVFSKFQVWRLITNFF 60
           MSSPAE+YHSLPPI KAYGT+C+       LGL   + +AL Y  VF  FQVWRL TN F
Sbjct: 1   MSSPAEFYHSLPPITKAYGTVCLLATATYHLGLYHPAYIALFYDKVFYGFQVWRLFTNLF 60

Query: 61  FLGTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFL 120
           FLG FSINFGIRLLMI RYGV LEKGPF+RRTADFLWMMIFGA +LLVLSAIPIF S FL
Sbjct: 61  FLGPFSINFGIRLLMIVRYGVQLEKGPFDRRTADFLWMMIFGAFALLVLSAIPIFWSPFL 120

Query: 121 GISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGH 180
            + LVFML+YVWSREFPN+QINIYGLV LKAFYLPWAMLALDVIFGSPL+PDLLGIIAGH
Sbjct: 121 AVPLVFMLLYVWSREFPNAQINIYGLVALKAFYLPWAMLALDVIFGSPLIPDLLGIIAGH 180

Query: 181 LYYFLTVLHPLATGKNLLKTPKWVYPYF-YWFLRVKNYAAPSNPPGHSAGCVKPNIIRDI 239
           LYYF TVLHPLA GKN+LKTP WV+     W + V+                        
Sbjct: 181 LYYFFTVLHPLAGGKNILKTPMWVHKLIARWRIGVQ------------------------ 216

Query: 240 FPLSTQARAHTHTHTHTHTQKLVARWRIGAPAINRAQPERTTGVAFRGRSYRLSD 294
            P+S    A+                          Q ER +GVAFRGRSYRL  
Sbjct: 217 -PISRGPAANN------------------------PQQERGSGVAFRGRSYRLGG 246

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297803112|ref|XP_002869440.1| hypothetical protein ARALYDRAFT_491823 [Arabidopsis lyrata subsp. lyrata] gi|297315276|gb|EFH45699.1| hypothetical protein ARALYDRAFT_491823 [Arabidopsis lyrata subsp. lyrata]

 Score =  322 bits (826), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 159/204 (77%), Positives = 178/204 (87%)

Query: 1   MSSPAEYYHSLPPICKAYGTLCVAVATVCSLGLLDLSILALEYKLVFSKFQVWRLITNFF 60
           MSSP EYY+SLPPI KAYGTLC+       LGL+    +AL  +LV  +FQ+WRLI+NFF
Sbjct: 1   MSSPGEYYNSLPPITKAYGTLCLFTTIANQLGLVAPVHIALFPQLVLKQFQIWRLISNFF 60

Query: 61  FLGTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFL 120
           FLG FSINFGIRLLMIARYGV LEKGPFERRTADFLWMMIFG+ +LLVLS IP F + FL
Sbjct: 61  FLGGFSINFGIRLLMIARYGVQLEKGPFERRTADFLWMMIFGSFTLLVLSVIPFFWTPFL 120

Query: 121 GISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGH 180
           G+SLVFML+Y+WSREFPN+ I++YGLVTLKAFYLPWAMLALDVIFGSP++PDLLGIIAGH
Sbjct: 121 GVSLVFMLLYLWSREFPNANISLYGLVTLKAFYLPWAMLALDVIFGSPIMPDLLGIIAGH 180

Query: 181 LYYFLTVLHPLATGKNLLKTPKWV 204
           LYYFLTVLHPLATGKN LKTPKWV
Sbjct: 181 LYYFLTVLHPLATGKNYLKTPKWV 204

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357520809|ref|XP_003630693.1| Derlin-1 [Medicago truncatula] gi|355524715|gb|AET05169.1| Derlin-1 [Medicago truncatula] gi|388496922|gb|AFK36527.1| unknown [Medicago truncatula]

 Score =  320 bits (821), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 177/293 (60%), Positives = 196/293 (66%), Gaps = 49/293 (16%)

Query: 1   MSSPAEYYHSLPPICKAYGTLCVAVATVCSLGLLDLSILALEYKLVFSKFQVWRLITNFF 60
           MSSP E+Y SLPPI KAYGT C+    V  LGL +   +AL Y+ VF +FQVWRL TNFF
Sbjct: 1   MSSPGEFYKSLPPISKAYGTACLVATAVYQLGLYNPVHIALLYERVFFRFQVWRLFTNFF 60

Query: 61  FLGTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFL 120
           FLG FSINFGIRLLMI RYGV LEKGPF+RRTADFLWMMIFGA +LLVLSAIP F + FL
Sbjct: 61  FLGPFSINFGIRLLMIVRYGVQLEKGPFDRRTADFLWMMIFGAFALLVLSAIPFFWTPFL 120

Query: 121 GISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGH 180
            ISLVFML+YVWSREFPN+QIN+YGLV LKAFYLPWAMLALDVIFGS L+PDLLGIIAGH
Sbjct: 121 AISLVFMLLYVWSREFPNAQINLYGLVALKAFYLPWAMLALDVIFGSALMPDLLGIIAGH 180

Query: 181 LYYFLTVLHPLATGKNLLKTPKWVYPYFYWFLRVKNYAAPSNPPGHSAGCVKPNIIRDIF 240
           LYYFLTVLHPLA GKN+LKTP WV+                                   
Sbjct: 181 LYYFLTVLHPLAGGKNILKTPMWVH----------------------------------- 205

Query: 241 PLSTQARAHTHTHTHTHTQKLVARWRIGAPAINRAQPERTTGVAFRGRSYRLS 293
                AR        T  Q            +N  Q E ++GV FRGRSYRL+
Sbjct: 206 --KLVARWRIGAPPITRGQP-----------VNNVQQESSSGV-FRGRSYRLN 244

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22329014|ref|NP_194662.2| derlin-1 [Arabidopsis thaliana] gi|75161705|sp|Q8VZU9.1|DERL1_ARATH RecName: Full=Derlin-1; AltName: Full=AtDerlin1-1 gi|17380686|gb|AAL36173.1| unknown protein [Arabidopsis thaliana] gi|20465889|gb|AAM20097.1| unknown protein [Arabidopsis thaliana] gi|332660218|gb|AEE85618.1| derlin-1 [Arabidopsis thaliana]

 Score =  320 bits (821), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 158/204 (77%), Positives = 176/204 (86%)

Query: 1   MSSPAEYYHSLPPICKAYGTLCVAVATVCSLGLLDLSILALEYKLVFSKFQVWRLITNFF 60
           MSSP E+Y+SLPPI KAYGTLC        LGL+    +AL  +LV  +FQ+WRLITN F
Sbjct: 1   MSSPGEFYNSLPPITKAYGTLCFFTTVATQLGLVAPVHIALIPELVLKQFQIWRLITNLF 60

Query: 61  FLGTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFL 120
           FLG FSINFGIRLLMIARYGV LEKGPFERRTADFLWMMIFG+ +LLVLS IP F + FL
Sbjct: 61  FLGGFSINFGIRLLMIARYGVQLEKGPFERRTADFLWMMIFGSFTLLVLSVIPFFWTPFL 120

Query: 121 GISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGH 180
           G+SLVFML+Y+WSREFPN+ I++YGLVTLKAFYLPWAMLALDVIFGSP++PDLLGIIAGH
Sbjct: 121 GVSLVFMLLYLWSREFPNANISLYGLVTLKAFYLPWAMLALDVIFGSPIMPDLLGIIAGH 180

Query: 181 LYYFLTVLHPLATGKNLLKTPKWV 204
           LYYFLTVLHPLATGKN LKTPKWV
Sbjct: 181 LYYFLTVLHPLATGKNYLKTPKWV 204

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357520811|ref|XP_003630694.1| Derlin-1 [Medicago truncatula] gi|355524716|gb|AET05170.1| Derlin-1 [Medicago truncatula]

 Score =  318 bits (814), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 159/203 (78%), Positives = 173/203 (85%)

Query: 1   MSSPAEYYHSLPPICKAYGTLCVAVATVCSLGLLDLSILALEYKLVFSKFQVWRLITNFF 60
           MSSP E+Y SLPPI KAYGT C+    V  LGL +   +AL Y+ VF +FQVWRL TNFF
Sbjct: 1   MSSPGEFYKSLPPISKAYGTACLVATAVYQLGLYNPVHIALLYERVFFRFQVWRLFTNFF 60

Query: 61  FLGTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFL 120
           FLG FSINFGIRLLMI RYGV LEKGPF+RRTADFLWMMIFGA +LLVLSAIP F + FL
Sbjct: 61  FLGPFSINFGIRLLMIVRYGVQLEKGPFDRRTADFLWMMIFGAFALLVLSAIPFFWTPFL 120

Query: 121 GISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGH 180
            ISLVFML+YVWSREFPN+QIN+YGLV LKAFYLPWAMLALDVIFGS L+PDLLGIIAGH
Sbjct: 121 AISLVFMLLYVWSREFPNAQINLYGLVALKAFYLPWAMLALDVIFGSALMPDLLGIIAGH 180

Query: 181 LYYFLTVLHPLATGKNLLKTPKW 203
           LYYFLTVLHPLA GKN+LKTP W
Sbjct: 181 LYYFLTVLHPLAGGKNILKTPMW 203

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	294
TAIR|locus:2118294	266	DER1 "AT4G29330" [Arabidopsis	0.687	0.759	0.762	4.4e-86
UNIPROTKB|F1RL23	231	DERL3 "Uncharacterized protein	0.670	0.852	0.398	3.9e-37
WB|WBGene00020109	237	R151.6 [Caenorhabditis elegans	0.748	0.928	0.366	3.9e-37
UNIPROTKB|Q21997	237	der-2 "Derlin-2" [Caenorhabdit	0.748	0.928	0.366	3.9e-37
DICTYBASE|DDB_G0285131	254	derl2 "derlin-2" [Dictyosteliu	0.683	0.791	0.396	4.9e-37
UNIPROTKB|Q96Q80	235	DERL3 "Derlin-3" [Homo sapiens	0.659	0.825	0.404	6.3e-37
UNIPROTKB|Q0P5E4	231	DERL3 "Derlin-3" [Bos taurus (	0.673	0.857	0.398	1.7e-36
UNIPROTKB|F1MS86	231	DERL3 "Derlin-3" [Bos taurus (	0.673	0.857	0.393	3.5e-36
UNIPROTKB|E1C6U6	241	DERL3 "Uncharacterized protein	0.755	0.921	0.359	7.2e-36
RGD|1597373	228	Derl3 "derlin 3" [Rattus norve	0.653	0.842	0.394	1.5e-35

TAIR|locus:2118294 DER1 "AT4G29330" [Arabidopsis thaliana (taxid:3702)]

 Score = 810 (290.2 bits), Expect = 4.4e-86, Sum P(2) = 4.4e-86
 Identities = 157/206 (76%), Positives = 172/206 (83%)

Query:     1 MSSPAEYYHSLPPICKAYGTLC--VAVATVCSXXXXXXXXXXXEYKLVFSKFQVWRLITN 58
             MSSP E+Y+SLPPI KAYGTLC    VAT              E  LV  +FQ+WRLITN
Sbjct:     1 MSSPGEFYNSLPPITKAYGTLCFFTTVATQLGLVAPVHIALIPE--LVLKQFQIWRLITN 58

Query:    59 FFFLGTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSY 118
              FFLG FSINFGIRLLMIARYGV LEKGPFERRTADFLWMMIFG+ +LLVLS IP F + 
Sbjct:    59 LFFLGGFSINFGIRLLMIARYGVQLEKGPFERRTADFLWMMIFGSFTLLVLSVIPFFWTP 118

Query:   119 FLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIA 178
             FLG+SLVFML+Y+WSREFPN+ I++YGLVTLKAFYLPWAMLALDVIFGSP++PDLLGIIA
Sbjct:   119 FLGVSLVFMLLYLWSREFPNANISLYGLVTLKAFYLPWAMLALDVIFGSPIMPDLLGIIA 178

Query:   179 GHLYYFLTVLHPLATGKNLLKTPKWV 204
             GHLYYFLTVLHPLATGKN LKTPKWV
Sbjct:   179 GHLYYFLTVLHPLATGKNYLKTPKWV 204

GO:0003674 "molecular_function" evidence=ND

GO:0006508 "proteolysis" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0006457 "protein folding" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

UNIPROTKB|F1RL23 DERL3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
 Identities = 80/201 (39%), Positives = 116/201 (57%)

Query:     5 AEYYHSLPPICKAYGTLCVAVATVCSXXXXXXXXXXXEYKLVFSKFQVWRLITNFFFLGT 64
             AE+   +P + + Y T CV                     LVF KFQVWRL+TNF F G 
Sbjct:     8 AEFLQ-VPAVTRTYTTACVLTTAAVQLEFLSPFQLYFNPHLVFRKFQVWRLVTNFLFFGP 66

Query:    65 FSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFLGISL 124
                +F   +L + RY   LE+G F  RTADF++M +FG + +++L  +     +FLG +L
Sbjct:    67 LGFSFFFNMLFVFRYCRMLEEGSFRGRTADFVFMFLFGGVLMILLGLLGSL--FFLGQAL 124

Query:   125 VFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGHLYYF 184
               MLVYVWSR  P  ++N +GL+T +A +LPWA++   ++ G+ ++ DLLGI  GH+YYF
Sbjct:   125 TAMLVYVWSRRSPRVRVNFFGLLTFQAPFLPWALMGFSLLLGNSILVDLLGIAVGHIYYF 184

Query:   185 LTVLHPLATG-KNLLKTPKWV 204
             L  + P   G K LL TP ++
Sbjct:   185 LEDVFPNQPGGKRLLLTPSFL 205

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=IEA

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IEA

GO:0018279 "protein N-linked glycosylation via asparagine" evidence=IEA

WB|WBGene00020109 R151.6 [Caenorhabditis elegans (taxid:6239)]

 Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
 Identities = 82/224 (36%), Positives = 124/224 (55%)

Query:    11 LPPICKAYGTLCVAVATVCSXXXXXXXXXXXEYKLVFSKFQVWRLITNFFFLGTFSINFG 70
             +PP+ + Y   CV + T               ++L+  K+Q WRLIT+F F G+F  +F 
Sbjct:    11 MPPVTRFYTGACVLLTTAVHLEFVTPFHLYFNWELIIRKYQFWRLITSFCFFGSFGFSFL 70

Query:    71 IRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFLGISLVFMLVY 130
               ++   RY + LE+G F  R ADF++M +FGA+ L++LS I + +  FLG +   MLVY
Sbjct:    71 FNMIFTYRYCMMLEEGSFRGRRADFVYMFLFGAV-LMILSGIFV-QILFLGQAFTIMLVY 128

Query:   131 VWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGHLYYFLTVLHP 190
             +WSR  P  Q+N +G++T  A YLPW +L   ++ G+  V D +GI  GH+Y+FL  + P
Sbjct:   129 IWSRRNPMIQMNFFGVLTFTAPYLPWVLLLFSLLLGNNAVVDFMGIACGHIYFFLEDVFP 188

Query:   191 LAT-GKNLLKTPKWVYPYFYWFLRVKNYAAPSNPPGHSAGCVKP 233
                 GK  LKTP+W+  Y +   R +       P G   G  +P
Sbjct:   189 FQEHGKRFLKTPQWLV-YLFDERRPEPLPEDERPGGFEWGDEQP 231

GO:0016021 "integral to membrane" evidence=IEA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=IMP

UNIPROTKB|Q21997 der-2 "Derlin-2" [Caenorhabditis elegans (taxid:6239)]

 Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
 Identities = 82/224 (36%), Positives = 124/224 (55%)

Query:    11 LPPICKAYGTLCVAVATVCSXXXXXXXXXXXEYKLVFSKFQVWRLITNFFFLGTFSINFG 70
             +PP+ + Y   CV + T               ++L+  K+Q WRLIT+F F G+F  +F 
Sbjct:    11 MPPVTRFYTGACVLLTTAVHLEFVTPFHLYFNWELIIRKYQFWRLITSFCFFGSFGFSFL 70

Query:    71 IRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFLGISLVFMLVY 130
               ++   RY + LE+G F  R ADF++M +FGA+ L++LS I + +  FLG +   MLVY
Sbjct:    71 FNMIFTYRYCMMLEEGSFRGRRADFVYMFLFGAV-LMILSGIFV-QILFLGQAFTIMLVY 128

Query:   131 VWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGHLYYFLTVLHP 190
             +WSR  P  Q+N +G++T  A YLPW +L   ++ G+  V D +GI  GH+Y+FL  + P
Sbjct:   129 IWSRRNPMIQMNFFGVLTFTAPYLPWVLLLFSLLLGNNAVVDFMGIACGHIYFFLEDVFP 188

Query:   191 LAT-GKNLLKTPKWVYPYFYWFLRVKNYAAPSNPPGHSAGCVKP 233
                 GK  LKTP+W+  Y +   R +       P G   G  +P
Sbjct:   189 FQEHGKRFLKTPQWLV-YLFDERRPEPLPEDERPGGFEWGDEQP 231

GO:0030970 "retrograde protein transport, ER to cytosol" evidence=ISS

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=ISS

GO:0030433 "ER-associated protein catabolic process" evidence=ISS

GO:0030307 "positive regulation of cell growth" evidence=ISS

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=ISS

GO:0008284 "positive regulation of cell proliferation" evidence=ISS

DICTYBASE|DDB_G0285131 derl2 "derlin-2" [Dictyostelium discoideum (taxid:44689)]

 Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
 Identities = 82/207 (39%), Positives = 114/207 (55%)

Query:     1 MSSPAE-YYHSLPPICKAYGTLCVAVATVCSXXXXXXXXXXXEYKLVFSKFQVWRLITNF 59
             M+ P E +Y +LP + K Y T CV  +                + LVF K++ WRL TNF
Sbjct:     1 MAQPFEDWYKNLPIVTKIYMTGCVVTSVSVYLGLVGPLRLYLNFPLVFGKYEFWRLFTNF 60

Query:    60 FFLGTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIF---- 115
             FF     +NF   +  + R+   LE+  F  R+AD+L+M IFG+  LL++ A   +    
Sbjct:    61 FFYDEIGMNFFFHMYFLVRHSRLLEESSFRGRSADYLFMWIFGSFLLLIMDAFLFYTKIV 120

Query:   116 -RSYFLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLL 174
              +  FL  S+ FM++YVWSR  PN  I+  GL T  A YLPW +L +  +F   L  DLL
Sbjct:   121 TKVLFLAPSIAFMVIYVWSRRNPNMHISFLGLFTFSAPYLPWVILIMGYLFNHDLTTDLL 180

Query:   175 GIIAGHLYYFLTVLHPLATGKNLLKTP 201
             G +AGH YYFL   +PL + + LLKTP
Sbjct:   181 GAVAGHAYYFLEDAYPLISNRRLLKTP 207

GO:0003674 "molecular_function" evidence=ND

GO:0030433 "ER-associated protein catabolic process" evidence=ISS

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006986 "response to unfolded protein" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

UNIPROTKB|Q96Q80 DERL3 "Derlin-3" [Homo sapiens (taxid:9606)]

 Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
 Identities = 80/198 (40%), Positives = 115/198 (58%)

Query:     5 AEYYHSLPPICKAYGTLCVAVATVCSXXXXXXXXXXXEYKLVFSKFQVWRLITNFFFLGT 64
             AE+   +P + +AY   CV                     LVF KFQVWRL+TNF F G 
Sbjct:     8 AEFLQ-VPAVTRAYTAACVLTTAAVQLELLSPFQLYFNPHLVFRKFQVWRLVTNFLFFGP 66

Query:    65 FSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFLGISL 124
                +F   +L + RY   LE+G F  RTADF++M +FG + + +L  +     +FLG +L
Sbjct:    67 LGFSFFFNMLFVFRYCRMLEEGSFRGRTADFVFMFLFGGVLMTLLGLLGSL--FFLGQAL 124

Query:   125 VFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGHLYYF 184
             + MLVYVWSR  P  ++N +GL+T +A +LPWA++   ++ G+ ++ DLLGI  GH+YYF
Sbjct:   125 MAMLVYVWSRRSPRVRVNFFGLLTFQAPFLPWALMGFSLLLGNSILVDLLGIAVGHIYYF 184

Query:   185 LTVLHPLATG-KNLLKTP 201
             L  + P   G K LL+TP
Sbjct:   185 LEDVFPNQPGGKRLLQTP 202

GO:0005515 "protein binding" evidence=IPI

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IDA

GO:0030433 "ER-associated protein catabolic process" evidence=IMP;NAS

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=IDA

GO:0018279 "protein N-linked glycosylation via asparagine" evidence=IMP

UNIPROTKB|Q0P5E4 DERL3 "Derlin-3" [Bos taurus (taxid:9913)]

 Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
 Identities = 80/201 (39%), Positives = 114/201 (56%)

Query:     5 AEYYHSLPPICKAYGTLCVAVATVCSXXXXXXXXXXXEYKLVFSKFQVWRLITNFFFLGT 64
             A  +  +P + + Y   CV                     LVF KFQVWRLITNF F G 
Sbjct:     7 ATEFLQVPAVTRTYTAACVLTTAAVQLELLSPFQLYFNPHLVFRKFQVWRLITNFLFFGP 66

Query:    65 FSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFLGISL 124
                +F   +L + RY   LE+G F  RTADF++M +FG + + +L  +     +FLG +L
Sbjct:    67 LGFSFFFNMLFVFRYCRMLEEGSFRGRTADFVFMFLFGGVLMTLLGLLGSL--FFLGQAL 124

Query:   125 VFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGHLYYF 184
               MLVYVWSR  P  ++N +GL+T +A +LPWA++ L ++ G+ ++ DLLGI  GH+YYF
Sbjct:   125 TAMLVYVWSRRSPGVRVNFFGLLTFQAPFLPWALMGLPMLLGNSILVDLLGIAVGHVYYF 184

Query:   185 LTVLHPLATG-KNLLKTPKWV 204
             L  + P   G K LL TP ++
Sbjct:   185 LEDVFPNQPGGKRLLLTPSFL 205

GO:0030433 "ER-associated protein catabolic process" evidence=ISS

GO:0018279 "protein N-linked glycosylation via asparagine" evidence=ISS

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1MS86 DERL3 "Derlin-3" [Bos taurus (taxid:9913)]

 Score = 390 (142.3 bits), Expect = 3.5e-36, P = 3.5e-36
 Identities = 79/201 (39%), Positives = 113/201 (56%)

Query:     5 AEYYHSLPPICKAYGTLCVAVATVCSXXXXXXXXXXXEYKLVFSKFQVWRLITNFFFLGT 64
             A  +  +P + + Y   CV                     LVF KFQVWRLITNF F G 
Sbjct:     7 ATEFLQVPAVTRTYTAACVLTTAAVQLELLSPFQLYFNPHLVFRKFQVWRLITNFLFFGP 66

Query:    65 FSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFLGISL 124
                +F   +L + RY   LE+G F  RTADF++M +FG + + +L  +     +FLG +L
Sbjct:    67 LGFSFFFNMLFVFRYCRMLEEGSFRGRTADFVFMFLFGGVLMTLLGLLGSL--FFLGQAL 124

Query:   125 VFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGHLYYF 184
               MLVYVWSR  P  ++N +GL+T +A +LPWA++   ++ G+ ++ DLLGI  GH+YYF
Sbjct:   125 TAMLVYVWSRRSPGVRVNFFGLLTFQAPFLPWALMGFSMLLGNSILVDLLGIAVGHVYYF 184

Query:   185 LTVLHPLATG-KNLLKTPKWV 204
             L  + P   G K LL TP ++
Sbjct:   185 LEDVFPNQPGGKRLLLTPSFL 205

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=IEA

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IEA

GO:0018279 "protein N-linked glycosylation via asparagine" evidence=IEA

UNIPROTKB|E1C6U6 DERL3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
 Identities = 82/228 (35%), Positives = 121/228 (53%)

Query:     5 AEYYHSLPPICKAYGTLCVAVATVCSXXXXXXXXXXXEYKLVFSKFQVWRLITNFFFLGT 64
             A+ Y  +P + +AY T CV                     L+F K Q+WRLITNF F G 
Sbjct:     7 AQEYLGMPAVTRAYTTACVLTTAAVQLEFITPFQLYFNPDLIFRKLQIWRLITNFLFFGP 66

Query:    65 FSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRS-YFLGIS 123
                +F   ++ + RY   LE+G F  RTADF++M +FG     +++   +F S +FLG +
Sbjct:    67 LGFSFFFNMIFLYRYCRMLEEGSFRGRTADFVFMFLFGGF---LMTLFGLFASLFFLGQA 123

Query:   124 LVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGHLYY 183
                MLVYVWSR  P  ++N +GL+  +A +LPW ++   ++ G+ ++ DLLGI  GH+YY
Sbjct:   124 FTIMLVYVWSRRNPYIRMNFFGLLNFQAPFLPWVLMGFSLLLGNSIIIDLLGIAVGHIYY 183

Query:   184 FLTVLHPLATG-KNLLKTPKWVYPYFYWFLRVKNY-AAPSNPPGHSAG 229
             FL  + P   G K LL TP ++   F       NY   P + P +  G
Sbjct:   184 FLEDVFPNQPGGKKLLLTPSFLKMVFDTPEEDPNYNPLPEDHPANQPG 231

GO:0018279 "protein N-linked glycosylation via asparagine" evidence=IEA

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IEA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=IEA

RGD|1597373 Derl3 "derlin 3" [Rattus norvegicus (taxid:10116)]

 Score = 384 (140.2 bits), Expect = 1.5e-35, P = 1.5e-35
 Identities = 77/195 (39%), Positives = 111/195 (56%)

Query:    11 LPPICKAYGTLCVAVATVCSXXXXXXXXXXXEYKLVFSKFQVWRLITNFFFLGTFSINFG 70
             +P + +AY   CV                     LVF KFQVWRLIT F F G     F 
Sbjct:    13 VPAVTRAYTAACVLTTAAVQLELLSPFQLYFNPHLVFRKFQVWRLITTFLFFGPLGFGFF 72

Query:    71 IRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFLGISLVFMLVY 130
               +L + RY   LE+G F  R ADF++M +FG + + +L  +     +FLG +L+ MLVY
Sbjct:    73 FNMLFVFRYCRMLEEGSFRGRKADFVFMFLFGGVLMTLLGFLGSM--FFLGQALMAMLVY 130

Query:   131 VWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGHLYYFLTVLHP 190
             VWSR  P+ ++N +GL+  +A +LPWA++   ++ G+ ++ DLLGII GH+YYFL  + P
Sbjct:   131 VWSRRSPHVRVNFFGLLNFQAPFLPWALMGFSLLLGNSVITDLLGIIVGHIYYFLEDVFP 190

Query:   191 LATG-KNLLKTPKWV 204
                G K LL TP ++
Sbjct:   191 NQPGGKRLLLTPSFL 205

GO:0018279 "protein N-linked glycosylation via asparagine" evidence=IEA;ISO

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IEA;ISO

GO:0030433 "ER-associated protein catabolic process" evidence=ISO

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=IEA;ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8VZU9	DERL1_ARATH	No assigned EC number	0.7745	0.6938	0.7669	yes	no
Q06397	DERL1_ORYSJ	No assigned EC number	0.6739	0.7823	0.9504	yes	no
Q4G2J5	DER12_MAIZE	No assigned EC number	0.7219	0.6972	0.8436	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pg.C_LG_VI0994	hypothetical protein (249 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	eugene3.00400185	hypothetical protein (228 aa)						•			0.800
	eugene3.00021229	hypothetical protein (227 aa)						•			0.800
	estExt_Genewise1_v1.C_LG_VII3310	hypothetical protein (230 aa)						•			0.800

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	294
pfam04511	192	pfam04511, DER1, Der1-like family	3e-47
COG5291	313	COG5291, COG5291, Predicted membrane protein [Func	1e-25

>gnl|CDD|218120 pfam04511, DER1, Der1-like family

 Score =  156 bits (396), Expect = 3e-47
 Identities = 79/193 (40%), Positives = 115/193 (59%), Gaps = 4/193 (2%)

Query: 11  LPPICKAYGTLCVAVATVCSLGLLDLSILALEYKLVFSKFQVWRLITNFFFLGTFSINFG 70
           +PP+ + +    V +  +  L L+    L   ++LVF KFQ+WRL+T+ F+ G    +F 
Sbjct: 1   IPPVTRYWTLATVLLTILGRLNLISPLKLVFNWELVFKKFQIWRLLTSLFYFGNTGFHFL 60

Query: 71  IRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFLGISLVFMLVY 130
             L  + RY   LE G F  R AD+L+M+IFGA+ + +     I  +YFLG  L  M+VY
Sbjct: 61  FNLYFLYRYSSMLENGSFRGRAADYLYMLIFGAVLITIFGL--IVNAYFLGQGLTAMIVY 118

Query: 131 VWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFG-SPLVPDLLGIIAGHLYYFLTVLH 189
           VWSR+  + Q+N +GL+  KA YLPW +L    + G    + DL+GI+ GHLYYF   ++
Sbjct: 119 VWSRKNADVQVNFFGLIRFKASYLPWVLLGFSFLLGNRSSLVDLMGILVGHLYYFFKDVY 178

Query: 190 P-LATGKNLLKTP 201
           P L  GK+LLKTP
Sbjct: 179 PRLPGGKDLLKTP 191

The endoplasmic reticulum (ER) of the yeast Saccharomyces cerevisiae contains of proteolytic system able to selectively degrade misfolded lumenal secretory proteins. For examination of the components involved in this degradation process, mutants were isolated. They could be divided into four complementation groups. The mutations led to stabilisation of two different substrates for this process. The mutant classes were called 'der' for 'degradation in the ER'. DER1 was cloned by complementation of the der1-2 mutation. The DER1 gene codes for a novel, hydrophobic protein, that is localised to the ER. Deletion of DER1 abolished degradation of the substrate proteins. The function of the Der1 protein seems to be specifically required for the degradation process associated with the ER. Interestingly this family seems distantly related to the Rhomboid family of membrane peptidases. Suggesting that this family may also mediate degradation of misfolded proteins (Bateman A pers. obs.). Length = 192

>gnl|CDD|227611 COG5291, COG5291, Predicted membrane protein [Function unknown]

 Score =  103 bits (257), Expect = 1e-25
 Identities = 52/200 (26%), Positives = 99/200 (49%), Gaps = 3/200 (1%)

Query: 11  LPPICKAYGTLCVAVATVCSLGLLDLSILALEYKLVFSKFQVWRLITNFFFLGTFSINFG 70
           +PPI +    L  AV  +  + L+          L   + Q+WRL T+F + G  +++  
Sbjct: 19  IPPITRYMTLLISAVTILVYVDLVSPWYSLYYSPLFLKRLQIWRLFTSFLYFGKPTLDMF 78

Query: 71  IRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFLGISLVFMLVY 130
           + +  + RY   LE+G F     ++ W ++  +L +  +S I       LG S    + Y
Sbjct: 79  MHVYFLYRYSRMLEEGCFNTSLVEYFWYLLVISLVIFAISNI-YGGISALGTSFSATITY 137

Query: 131 VWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPL-VPDLLGIIAGHLYYFLTVLH 189
           +WS+  P + I  +G +++   YLP+ +L    +    + + D+LG + GHL+++   ++
Sbjct: 138 IWSKRNPRAIIQFFGFISVPGKYLPFILLGFSFLSRRGISIDDVLGFVVGHLFHYFGDIY 197

Query: 190 PLATGKNLLKTPKWVYPYFY 209
           P+  G+++L TP WV   F 
Sbjct: 198 PM-IGRDILSTPCWVKKLFN 216

Length = 313

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	294
KOG0858	239	consensus Predicted membrane protein [Function unk	100.0
PF04511	197	DER1: Der1-like family; InterPro: IPR007599 The en	100.0
COG5291	313	Predicted membrane protein [Function unknown]	100.0
KOG2632	258	consensus Rhomboid family proteins [Function unkno	99.71
PRK10907	276	intramembrane serine protease GlpG; Provisional	99.26
PTZ00101	278	rhomboid-1 protease; Provisional	99.0
COG0705	228	Membrane associated serine protease [Amino acid tr	99.0
PF01694	145	Rhomboid: Rhomboid family; InterPro: IPR022764 In	98.79
KOG4463	323	consensus Uncharacterized conserved protein [Funct	98.45
KOG2289	316	consensus Rhomboid family proteins [Signal transdu	97.49
KOG2890	326	consensus Predicted membrane protein [Function unk	97.39
PF08551	99	DUF1751: Eukaryotic integral membrane protein (DUF	95.31

>KOG0858 consensus Predicted membrane protein [Function unknown]

Probab=100.00  E-value=5.1e-57  Score=404.51  Aligned_cols=206  Identities=44%  Similarity=0.866  Sum_probs=197.9

Q ss_pred             CChHHHHhccchHHHHHHHHHHHHHHHHHhCccccceeeeeHHHHhhccceeeeeeeccccCcccHHHHHHHHHHHHHhH
Q 022636            2 SSPAEYYHSLPPICKAYGTLCVAVATVCSLGLLDLSILALEYKLVFSKFQVWRLITNFFFLGTFSINFGIRLLMIARYGV   81 (294)
Q Consensus         2 ~~~~~~~~~IPPVTR~ll~~~v~vtll~~~g~i~p~~L~l~~~~v~~~~QiWRLiTs~f~~g~~~l~llf~m~~l~~~s~   81 (294)
                      +.+.+|+.+||||||+++++|+++++++++++++|.+++++|++|+||+|+||++|+++++|++++++++||+++|+||+
T Consensus         3 ~~l~~~~~~iPpVTR~~~~~~v~tt~~~~l~lIsP~~l~~~p~Lv~kk~QiWRliTs~lyfg~~gf~fl~n~~FlyrY~~   82 (239)
T KOG0858|consen    3 MDLLNFYLQIPPVTRYYTTACVVTTLLVRLDLISPFQLYLNPELVFKKFQIWRLITSFLYFGPFGFDFLMNLYFLYRYSS   82 (239)
T ss_pred             hhHHHHHhcCChHHHHHHHHHHHHHHHHhhcccCchheEecHHHHHhHhHHHHhhhhhheeccccHHHHHHHHHHHHHHH
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhccCCCCCCcchhHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHHHhhhcCCCceEEEEEEeeeccccHHHHHHHH
Q 022636           82 NLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLAL  161 (294)
Q Consensus        82 ~LE~~~f~~~~~dyl~~ll~~~~~i~l~a~~~~~~~~fLg~~l~~al~Yiwsr~nP~~~v~lfGli~i~a~ylP~~lL~~  161 (294)
                      +||+..|+++++||+++++++++++.+.+.  +.+.++|+.++.++++|+|||+||+.+|+++|++++||+|+||+++++
T Consensus        83 ~LE~g~f~~rtadf~~mllf~~~l~~~~~~--~~~~~fLg~~l~~~l~YvWs~~Np~~~v~F~g~~~f~a~YlPwvll~f  160 (239)
T KOG0858|consen   83 MLEEGSFRGRTADFLYMLLFGAVLLTLTGL--FVYIVFLGQSLVFMLVYVWSKRNPDVIVSFFGLITFKAPYLPWVLLGF  160 (239)
T ss_pred             HHhcCCCCCchhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhCCCceEEEEEEecCccccchHHHHHH
Confidence            999999999999999999999998887765  367889999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCchhhhHHhhhhHHHhhhhhcccC-CCCCCcccChHHHHHHHh
Q 022636          162 DVIFGSPLVPDLLGIIAGHLYYFLTVLHPL-ATGKNLLKTPKWVYPYFY  209 (294)
Q Consensus       162 ~~l~~~s~~~~l~GilvGhlY~fL~~v~P~-~~g~~~l~tP~~l~~l~~  209 (294)
                      +++.+++.+.|++||++||+|+|++|++|. .+|++++|||+|+++++.
T Consensus       161 s~l~g~~~~~dllGi~~GHiy~fl~~~~p~~~gg~~~l~TP~~l~rl~~  209 (239)
T KOG0858|consen  161 SFLFGGSILVDLLGIIVGHIYYFLDDVYPRDYGGRDLLKTPQFLKRLFA  209 (239)
T ss_pred             HHHhCCchHHHHHhhhhheeEEEEeeeccCCcCCcCcccCHHHHHHhcC
Confidence            999999889999999999999999999999 577999999999999993

>PF04511 DER1: Der1-like family; InterPro: IPR007599 The endoplasmic reticulum (ER) of the yeast Saccharomyces cerevisiae (Baker's yeast) contains a proteolytic system able to selectively degrade misfolded lumenal secretory proteins

Probab=100.00  E-value=5.1e-50  Score=355.86  Aligned_cols=192  Identities=47%  Similarity=0.946  Sum_probs=181.7

Q ss_pred             cchHHHHHHHHHHHHHHHHHhCccccceeeeeHHHHhhccceeeeeeeccccCcccHHHHHHHHHHHHHhHHhccCCCCC
Q 022636           11 LPPICKAYGTLCVAVATVCSLGLLDLSILALEYKLVFSKFQVWRLITNFFFLGTFSINFGIRLLMIARYGVNLEKGPFER   90 (294)
Q Consensus        11 IPPVTR~ll~~~v~vtll~~~g~i~p~~L~l~~~~v~~~~QiWRLiTs~f~~g~~~l~llf~m~~l~~~s~~LE~~~f~~   90 (294)
                      ||||||+++++++++++++.+|+++|.+++++|+++++++|+||++|++|++|+.+++++++++++|++|++||+++|++
T Consensus         1 iPpVTR~~~~~~~~~s~l~~~~~~~~~~l~~~~~~v~~~~q~WRl~Tsff~~g~~~~~~l~~~~~l~~~s~~LE~~~f~~   80 (197)
T PF04511_consen    1 IPPVTRYWLISTVALSLLVSFGIISPYYLYFDWELVFKKFQIWRLFTSFFYFGPFSLNFLFNLYFLYQYSSSLEEGHFQG   80 (197)
T ss_pred             CChhHHHHHHHHHHHHHHHHCCCCCHHHeeECcHHHhhhcCceeeEEEEEEEcCCCHHHHHHHHHHHHHhhHhccCCCCC
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcchhHHHHHHHHHHHHHHHhhhh---ccccchHHHHHHHHHHHhhhcCCCceEEEEEEeeeccccHHHHHHHHHHHhCC
Q 022636           91 RTADFLWMMIFGALSLLVLSAIPI---FRSYFLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGS  167 (294)
Q Consensus        91 ~~~dyl~~ll~~~~~i~l~a~~~~---~~~~fLg~~l~~al~Yiwsr~nP~~~v~lfGli~i~a~ylP~~lL~~~~l~~~  167 (294)
                      +++||+|+++++++++.+++.+..   .+.+++++++.++++|+|||+||+.+|+++|++++|++|+||+++++++++++
T Consensus        81 ~~ady~~~ll~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~Y~wsr~np~~~v~~~g~~~i~a~ylP~~~~~~~~l~~~  160 (197)
T PF04511_consen   81 RSADYLWFLLFGASLILILSLLIGPYFFNIPFLGSSLSFALTYIWSRKNPNAQVSFFGLFTIKAKYLPWVLLAFSLLFGG  160 (197)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHhCcccceeeEEEEEEChhhHHHHHHHHHHHhCC
Confidence            999999999999998888876421   34578999999999999999999999999999999999999999999999998


Q ss_pred             -CchhhhHHhhhhHHHhhhhhcccCC-CCCCcccChH
Q 022636          168 -PLVPDLLGIIAGHLYYFLTVLHPLA-TGKNLLKTPK  202 (294)
Q Consensus       168 -s~~~~l~GilvGhlY~fL~~v~P~~-~g~~~l~tP~  202 (294)
                       +...|++|+++||+|+|++|++|+. +|+|++|||+
T Consensus       161 ~~~~~~l~Gi~~Ghly~fl~~~~p~~~~G~~~l~tP~  197 (197)
T PF04511_consen  161 SSPIPDLLGILVGHLYYFLKDIYPRLPGGKDLLKTPQ  197 (197)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHhcccccCCCccCCCcC
Confidence             7799999999999999999999996 6899999995

For examination of the components involved in this degradation process, mutants were isolated. They could be divided into four complementation groups. The mutations led to stabilisation of two different substrates for this process, and the classes were called der for degradation in the ER. DER1 was cloned by complementation of the der1-2 mutation. The DER1 gene codes for a novel, hydrophobic protein that is localized to the ER. Deletion of DER1 abolished degradation of the substrate proteins, suggesting that the function of the Der1 protein may be specifically required for the degradation process associated with the ER []. Interestingly this family seems distantly related to the Rhomboid family of membrane peptidases. This family may also mediate degradation of misfolded proteins.

>COG5291 Predicted membrane protein [Function unknown]

Probab=100.00  E-value=7.5e-41  Score=300.11  Aligned_cols=201  Identities=26%  Similarity=0.575  Sum_probs=184.2

Q ss_pred             HHHhc---cchHHHHHHHHHHHHHHHHHhCccccceeeeeHHHHhhccceeeeeeeccccCcccHHHHHHHHHHHHHhHH
Q 022636            6 EYYHS---LPPICKAYGTLCVAVATVCSLGLLDLSILALEYKLVFSKFQVWRLITNFFFLGTFSINFGIRLLMIARYGVN   82 (294)
Q Consensus         6 ~~~~~---IPPVTR~ll~~~v~vtll~~~g~i~p~~L~l~~~~v~~~~QiWRLiTs~f~~g~~~l~llf~m~~l~~~s~~   82 (294)
                      +.+.+   ||||||+++++..++++++.+++++|.++++.|++++|+.|+||++||+.++++..+++++++|++|+||++
T Consensus        11 ~llg~~~~IPPITRy~~ll~~a~til~~~~lvsPwy~ly~~pL~~k~~qiwRlfTs~~~~~~~~~d~~M~vyf~Y~yS~~   90 (313)
T COG5291          11 FLLGQMLRIPPITRYMTLLISAVTILVYVDLVSPWYSLYYSPLFLKRLQIWRLFTSFLYFGKPTLDMFMHVYFLYRYSRM   90 (313)
T ss_pred             hhhcccccCCcHHHHHHHHHHHHHHHHHHhhcCccceeeechhHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHH
Confidence            44444   999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCCCCCCcchhHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHHHhhhcCCCceEEEEEEeeeccccHHHHHHHHH
Q 022636           83 LEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALD  162 (294)
Q Consensus        83 LE~~~f~~~~~dyl~~ll~~~~~i~l~a~~~~~~~~fLg~~l~~al~Yiwsr~nP~~~v~lfGli~i~a~ylP~~lL~~~  162 (294)
                      ||+.+|+.+-.||+||+++++.++..++.+ +.+...|++++..++.|+|+++||+.++.+||+|++++||+|+++++++
T Consensus        91 LE~g~f~~~lv~Y~~yl~~~~l~i~a~s~I-~gg~saL~tsf~a~ItY~WS~~N~~~~Iqf~g~i~v~gkYlP~Illgfs  169 (313)
T COG5291          91 LEEGCFNTSLVEYFWYLLVISLVIFAISNI-YGGISALGTSFSATITYIWSKRNPRAIIQFFGFISVPGKYLPFILLGFS  169 (313)
T ss_pred             HhccccCccHHHHHHHHHHHHHHHHHHHHH-hcchhhhcchhhhheeeeeeecCCceEEEEEEeeecchhhhhHHHHHHH
Confidence            999999877779999999999888877765 3446678999999999999999999999999999999999999999999


Q ss_pred             HHhC-CCchhhhHHhhhhHHHhhhhhcccCCCCCCcccChHHHHHHH
Q 022636          163 VIFG-SPLVPDLLGIIAGHLYYFLTVLHPLATGKNLLKTPKWVYPYF  208 (294)
Q Consensus       163 ~l~~-~s~~~~l~GilvGhlY~fL~~v~P~~~g~~~l~tP~~l~~l~  208 (294)
                      ++.+ +....+++|+.+||...++.++||.+ |++...||.|.++++
T Consensus       170 fl~~~g~~i~~vlGf~~g~~~h~~g~I~~mi-~r~~~~t~~~~~~~~  215 (313)
T COG5291         170 FLSRRGISIDDVLGFVVGHLFHYFGDIYPMI-GRDILSTPCWVKKLF  215 (313)
T ss_pred             HHhcCCccceeeeeeeeccccccccchhhhh-hcccCCCcccccccc
Confidence            9998 56699999999999999999999987 466777777777754

>KOG2632 consensus Rhomboid family proteins [Function unknown]

Probab=99.71  E-value=5.1e-17  Score=148.36  Aligned_cols=178  Identities=17%  Similarity=0.280  Sum_probs=137.7

Q ss_pred             ChHHHHhccchHHHHHHHHHHHHHHHHHhCccccceeeeeHHHHhhccceeeeeeeccccCcccHHHHHHHHHHHHHhHH
Q 022636            3 SPAEYYHSLPPICKAYGTLCVAVATVCSLGLLDLSILALEYKLVFSKFQVWRLITNFFFLGTFSINFGIRLLMIARYGVN   82 (294)
Q Consensus         3 ~~~~~~~~IPPVTR~ll~~~v~vtll~~~g~i~p~~L~l~~~~v~~~~QiWRLiTs~f~~g~~~l~llf~m~~l~~~s~~   82 (294)
                      ...+++..+|++|-.++..+.++.+...+..+.  ...+.+...+++.|+||++|+.++|.+ -+|++|||..++..++.
T Consensus         6 ~~~~~~~~~p~~ts~~~~~~~~i~lv~~~~~i~--~~~~l~~~~l~~~ql~RL~Ty~l~H~s-~~hllfnmlaL~~~g~~   82 (258)
T KOG2632|consen    6 RVGQFWMKIPLLTSIVVVLAILIYLVSFFPGIV--EVLGLPSELLINWQLYRLITYALVHLS-LPHLLFNMLALWPLGSQ   82 (258)
T ss_pred             cCccccccchHHHHHHHHHHHHHHHHhccchhh--hHhcCCHHHhhhHHHHHHHHHHHHhcc-HHHHHHHHHHHHhchhH
Confidence            567889999999999999999998888765444  455666777788999999999999988 89999999999999999


Q ss_pred             hccCCCCCCcchhHHHHHHHHHHH---HHHHhhhhc--ccc----chH-HHHHHHHHHHhhhcCCCceEEEEEEeeeccc
Q 022636           83 LEKGPFERRTADFLWMMIFGALSL---LVLSAIPIF--RSY----FLG-ISLVFMLVYVWSREFPNSQINIYGLVTLKAF  152 (294)
Q Consensus        83 LE~~~f~~~~~dyl~~ll~~~~~i---~l~a~~~~~--~~~----fLg-~~l~~al~Yiwsr~nP~~~v~lfGli~i~a~  152 (294)
                      +|+.+.  .+..++.+..+.++.-   .++....+.  +..    .-| +...+++.-+-+-+.|....+++|++++|++
T Consensus        83 fE~~~G--~t~~~l~~~~llalf~gIl~ll~~~~~~~~d~~~~~~a~G~s~v~Fam~~~~~~~sp~r~~~~fg~~siP~~  160 (258)
T KOG2632|consen   83 FERTHG--TTVRILMFTVLLALFSGILYLLAYHVFLLSDLVYVEGAIGFSGVLFAMMAVLEVQSPVRSRSVFGLFSIPIV  160 (258)
T ss_pred             HHhhcc--ceehHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhcccccccHHHHHHHHHHhhcCcccchhhcccccccHH
Confidence            999984  2556666655443321   111111111  111    112 4566777777788899999999999999999


Q ss_pred             cHHHHHHHHH-HHhCC-CchhhhHHhhhhHHHhhh
Q 022636          153 YLPWAMLALD-VIFGS-PLVPDLLGIIAGHLYYFL  185 (294)
Q Consensus       153 ylP~~lL~~~-~l~~~-s~~~~l~GilvGhlY~fL  185 (294)
                      +.||++++.. +++++ |++.|++|+++|+.|-+.
T Consensus       161 l~Pw~lLi~~~~lvp~aSFlghl~GllvG~ay~~~  195 (258)
T KOG2632|consen  161 LAPWALLIATQILVPQASFLGHLCGLLVGYAYAFS  195 (258)
T ss_pred             HHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHH
Confidence            9999998884 77765 789999999999999884

>PRK10907 intramembrane serine protease GlpG; Provisional

Probab=99.26  E-value=1.4e-11  Score=115.11  Aligned_cols=168  Identities=20%  Similarity=0.259  Sum_probs=105.6

Q ss_pred             ccchHHHHHHHHHHHHHHHHHhCcccc--ceeeeeHHHHhhccceeeeeeeccccCcccHHHHHHHHHHHHHhHHhccCC
Q 022636           10 SLPPICKAYGTLCVAVATVCSLGLLDL--SILALEYKLVFSKFQVWRLITNFFFLGTFSINFGIRLLMIARYGVNLEKGP   87 (294)
Q Consensus        10 ~IPPVTR~ll~~~v~vtll~~~g~i~p--~~L~l~~~~v~~~~QiWRLiTs~f~~g~~~l~llf~m~~l~~~s~~LE~~~   87 (294)
                      +-.|+|-.++++|+++.++..++....  ..+.+.. ....++|+||++|+.|.|++ .+|++|||++++..|+.+|+..
T Consensus        92 ~~~p~T~~li~i~i~vf~l~~~~~~~~~~~~l~~~~-~~~~~~q~WRl~T~~flH~~-~~Hl~fNml~l~~lG~~iE~~~  169 (276)
T PRK10907         92 RAGPLTLGVMIACVVVFILMQILGDQTVMLWLAWPF-DPSLKFELWRYFTHALLHFS-LLHILFNLLWWWYLGGAVEKRL  169 (276)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHhccHHHHHHHhccc-cccccCCcHHHHhHHHHhCC-HHHHHHHHHHHHHHHHHHHHHH
Confidence            356799999999999999876543222  1222222 22346899999999999998 8999999999999999999986


Q ss_pred             CCCCcchhHHHHHHHHHHHHHHHhhhhccccchH--HHHHHHHHHHh--hhcCCCceEEEEEEeeeccccHHHHHH----
Q 022636           88 FERRTADFLWMMIFGALSLLVLSAIPIFRSYFLG--ISLVFMLVYVW--SREFPNSQINIYGLVTLKAFYLPWAML----  159 (294)
Q Consensus        88 f~~~~~dyl~~ll~~~~~i~l~a~~~~~~~~fLg--~~l~~al~Yiw--sr~nP~~~v~lfGli~i~a~ylP~~lL----  159 (294)
                         ++..|+...+++++...+...+ +.+..+.|  .++...+.|.|  .++.|+..+.      +|..++.++.+    
T Consensus       170 ---G~~~~l~l~l~s~i~~~~~~~~-~~~~~~gGaSGvVygL~g~~~~~~~~~p~~~~~------lp~~~~~f~llwl~~  239 (276)
T PRK10907        170 ---GSGKLIVITLISALLSGWVQSK-FSGPWFGGLSGVVYALMGYVWLRGERDPQSGIY------LPRGLIAFALLWLVA  239 (276)
T ss_pred             ---ChHHHHHHHHHHHHHHHHHHHH-HccchhhHHHHHHHHHHHHHHHHhccccccchh------hhHHHHHHHHHHHHH
Confidence               3456766555555443333322 22334433  34444456766  3445654332      22222232221    


Q ss_pred             HHHHHhCCCc--hhhhHHhhhhHHHhhhhhcc
Q 022636          160 ALDVIFGSPL--VPDLLGIIAGHLYYFLTVLH  189 (294)
Q Consensus       160 ~~~~l~~~s~--~~~l~GilvGhlY~fL~~v~  189 (294)
                      ++.-+.+.++  .+|+.|.++|.+.-+++...
T Consensus       240 g~~~~~g~~Ian~AHlgGli~Gll~g~~~~~~  271 (276)
T PRK10907        240 GYFDLFGMSIANAAHVAGLAVGLAMAFWDTRN  271 (276)
T ss_pred             HHHHccCcccHHHHHHHHHHHHHHHHHHhhhh
Confidence            1111223333  89999999999988876443

>PTZ00101 rhomboid-1 protease; Provisional

Probab=99.00  E-value=5.7e-10  Score=104.35  Aligned_cols=96  Identities=18%  Similarity=0.173  Sum_probs=70.3

Q ss_pred             ccchHHHHHHHHHHHHHHHHHh-C---ccccc-----ee-eeeHHHHhhccceeeeeeeccccCcccHHHHHHHHHHHHH
Q 022636           10 SLPPICKAYGTLCVAVATVCSL-G---LLDLS-----IL-ALEYKLVFSKFQVWRLITNFFFLGTFSINFGIRLLMIARY   79 (294)
Q Consensus        10 ~IPPVTR~ll~~~v~vtll~~~-g---~i~p~-----~L-~l~~~~v~~~~QiWRLiTs~f~~g~~~l~llf~m~~l~~~   79 (294)
                      ++|.+|.+++++.+++.++... +   ...|.     ++ .++++.+ +++|+||++|+.|.|++ .+|+++||++++..
T Consensus        51 ~i~~l~~~Iiii~iivfil~l~~~~~~~l~p~~~~L~~~Ga~~~~~i-~~gq~WRLiT~~FlH~~-~~HLl~Nm~~l~~~  128 (278)
T PTZ00101         51 TWKSFIMAISIIQIIVFIISVSIKPADFLTPSDSLLVTLGANVASRI-KQGEIHRLILPIFLHAN-IFHTFFNVFFQLRM  128 (278)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHhCcchhhh-hcCCCHHHHHHHHHccC-HHHHHHHHHHHHHH
Confidence            6889999999999998887644 2   12232     12 2345555 56899999999999988 89999999999999


Q ss_pred             hHHhccCCCCCCcchhHHHHHHHHHHHHHHH
Q 022636           80 GVNLEKGPFERRTADFLWMMIFGALSLLVLS  110 (294)
Q Consensus        80 s~~LE~~~f~~~~~dyl~~ll~~~~~i~l~a  110 (294)
                      |..+|+...   +..|+...++++++..+++
T Consensus       129 G~~lE~~~G---~~r~~ilYl~sGi~G~l~s  156 (278)
T PTZ00101        129 GFTLEKNYG---IVKIIILYFLTGIYGNILS  156 (278)
T ss_pred             HHHHHHHHC---hHHHHHHHHHHHHHHHHHH
Confidence            999999973   4557644444444444444

>COG0705 Membrane associated serine protease [Amino acid transport and metabolism]

Probab=99.00  E-value=1.6e-09  Score=97.69  Aligned_cols=172  Identities=23%  Similarity=0.246  Sum_probs=122.7

Q ss_pred             cchHHHHHHHHHHHHHHHHHhCccccce--------eeeeHHHHhhcc---ceeeeeeeccccCcccHHHHHHHHHHHHH
Q 022636           11 LPPICKAYGTLCVAVATVCSLGLLDLSI--------LALEYKLVFSKF---QVWRLITNFFFLGTFSINFGIRLLMIARY   79 (294)
Q Consensus        11 IPPVTR~ll~~~v~vtll~~~g~i~p~~--------L~l~~~~v~~~~---QiWRLiTs~f~~g~~~l~llf~m~~l~~~   79 (294)
                      .|++|+.++..++++.+...........        ..+.+.......   |+||++|+.|.|++ -.|+++||+.++.+
T Consensus        16 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~lit~~FlH~~-~~Hll~N~~~l~~f   94 (228)
T COG0705          16 APPVTLFLILLNILVFLLELVLGWSAIFLLTFLFRLFGLYPLNLLGALARDQLWRLITAIFLHAG-FLHLLFNMLALWVF   94 (228)
T ss_pred             cchHHHHHHHHHHHHHHHHHHccchHHHHHHHhhhHHhhcchhhhccccccchHHHHHHHHHHhh-HHHHHHHHHHHHHh
Confidence            4899999999999999887643222110        112222222222   89999999999999 89999999999999


Q ss_pred             hHHhccCCCCCCcchhHHHHHHHHHHHHHHHhhhhcc--ccchH-HHHHHHHHHHhhhcCCCceEEEEEE-eeeccccHH
Q 022636           80 GVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFR--SYFLG-ISLVFMLVYVWSREFPNSQINIYGL-VTLKAFYLP  155 (294)
Q Consensus        80 s~~LE~~~f~~~~~dyl~~ll~~~~~i~l~a~~~~~~--~~fLg-~~l~~al~Yiwsr~nP~~~v~lfGl-i~i~a~ylP  155 (294)
                      +..+|+...   +..|+.+.+.+++...+........  .+.+| ++.++.++-.++...|..++..... ++.++..+-
T Consensus        95 g~~le~~~G---~~~f~~~yl~~gl~~~~~~~~~~~~~~~~~~GASG~i~gllga~~~~~~~~~~~~~~~~~~~~~~~~i  171 (228)
T COG0705          95 GSNLERRLG---TLRFLLFYLLSGLLAGLAQVLFGPKGGAPSLGASGAIFGLLGAYFLLFPFARILLLFLSLPRPALILI  171 (228)
T ss_pred             hHHHHHHhc---hhHHHHHHHHHHHHHHHHHHHHcccccCcccchhHHHHHHHHHHHHHccccchhhhhccCchhHHHHH
Confidence            999999973   4457776666665554443321111  24455 5678888888899999988887754 567766766


Q ss_pred             HHHHHHHHHhCC-C------chhhhHHhhhhHHHhhhh
Q 022636          156 WAMLALDVIFGS-P------LVPDLLGIIAGHLYYFLT  186 (294)
Q Consensus       156 ~~lL~~~~l~~~-s------~~~~l~GilvGhlY~fL~  186 (294)
                      .+.++.+++++. +      ...|+.|++.|.+|..+.
T Consensus       172 ~~~~~~~~~~~~~~~~~~va~~aHl~G~i~G~l~~~~~  209 (228)
T COG0705         172 LIWLLYSLFSGAGSFGPSVAWSAHLGGLIGGLLLAALL  209 (228)
T ss_pred             HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            677777777652 2      489999999999988654

>PF01694 Rhomboid: Rhomboid family; InterPro: IPR022764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.79  E-value=1.8e-09  Score=89.71  Aligned_cols=134  Identities=25%  Similarity=0.295  Sum_probs=78.2

Q ss_pred             hccceeeeeeeccccCcccHHHHHHHHHHHHHhHHhccCCCCCCcchhHHHHHHHHHHHHHHHhhhhccc-cchH-HHHH
Q 022636           48 SKFQVWRLITNFFFLGTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRS-YFLG-ISLV  125 (294)
Q Consensus        48 ~~~QiWRLiTs~f~~g~~~l~llf~m~~l~~~s~~LE~~~f~~~~~dyl~~ll~~~~~i~l~a~~~~~~~-~fLg-~~l~  125 (294)
                      +++|+||++|+.|.|.+ ..|+++|++.++.++..+|+...   +.++....+.++++..+......... +..| ++.+
T Consensus         2 ~~~~~wrl~T~~f~h~~-~~hl~~n~~~l~~~g~~lE~~~G---~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~G~Sg~~   77 (145)
T PF01694_consen    2 QNGQWWRLFTSPFVHAN-FLHLLFNLLALWFFGSLLERRLG---SRRFLALYLLSGLLGSLLSLLFSPPNQPYVGASGAV   77 (145)
T ss_dssp             GCC-TTHHHHGGG--SS-HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH-S-----SSHHHH
T ss_pred             CCCcchhhhHHHHHccC-HHHHHHHHHHHHHhhhhHhhhcc---chHHHHHHHHHHHhhhhccccccccccccCCCcccc
Confidence            57899999999999988 99999999999999999999963   44565555555444444333211111 2333 4455


Q ss_pred             HHHHHHhhhcCCCceEE---EEEEeeeccccHHHHHHHHHHHhCCCchhhhHHhhhhHHHhhhh
Q 022636          126 FMLVYVWSREFPNSQIN---IYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGHLYYFLT  186 (294)
Q Consensus       126 ~al~Yiwsr~nP~~~v~---lfGli~i~a~ylP~~lL~~~~l~~~s~~~~l~GilvGhlY~fL~  186 (294)
                      ++++-..+...|..+..   .+..+.+...++++.++... ....+...|+.|+++|.+|.+.-
T Consensus        78 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~hl~G~~~G~~~~~~~  140 (145)
T PF01694_consen   78 FGLLGAFLFLYPQNKKRLRFIYLALVVPIIVLVIILLLGF-IPNISFLGHLGGFLAGLLYGFLI  140 (145)
T ss_dssp             HHHHHHHHHHHHCCCCCS---HCCCCCCCCCCCHHHCTSS-SSTTTHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHhhccchhhcchHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHH
Confidence            55554444444433211   12233444444443333222 22235699999999999988754

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of proteins contain serine peptidases belonging to the MEROPS peptidase family S54 (Rhomboid, clan ST). They are integral membrane proteins related to the Drosophila melanogaster (Fruit fly) rhomboid protein P20350 from SWISSPROT. Members of this family are found in archaea, bacteria and eukaryotes. The D. melanogaster rhomboid protease cleaves type-1 transmembrane domains using a catalytic triad composed of serine, histidine and asparagine contributed by different transmembrane domains. It cleaves the transmembrane proteins Spitz, Gurken and Keren within their transmembrane domains to release a soluble TGFalpha-like growth factor. Cleavage occurs in the Golgi, following translocation of the substrates from the endoplasmic reticulum membrane by Star, another transmembrane protein. The growth factors are then able to activate the epidermal growth factor receptor [, ]. Few substrates of mammalian rhomboid homologues have been determined, but rhomboid-like protein 2 (MEROPS S54.002) has been shown to cleave ephrin B3 []. Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite. In Saccharomyces cerevisiae (Baker's yeast) the Pcp1 (MDM37) protein (MEROPS S54.007) is a mitochondrial endopeptidase required for the activation of cytochrome c peroxidase and for the processing of the mitochondrial dynamin-like protein Mgm1 [, ]. Mutations in Pcp1 result in cells have fragmented mitochondria, which have very few short tubulues []. This entry represents the 6 transmembrane helix rhomboid domain.; GO: 0004252 serine-type endopeptidase activity, 0016021 integral to membrane; PDB: 3UBB_A 3B45_A 3B44_A 2NRF_A 3TXT_A 2O7L_A 2XTU_A 2IRV_A 2XOW_A 2XTV_A ....

>KOG4463 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.45  E-value=4e-07  Score=83.79  Aligned_cols=189  Identities=20%  Similarity=0.344  Sum_probs=114.3

Q ss_pred             HHHhccchHHHHHHHHHHHHHHHHHhCccccceeeeeHHHHhhc-cceeeeeeeccccCcccHHHHHHHHHHHHHhHHhc
Q 022636            6 EYYHSLPPICKAYGTLCVAVATVCSLGLLDLSILALEYKLVFSK-FQVWRLITNFFFLGTFSINFGIRLLMIARYGVNLE   84 (294)
Q Consensus         6 ~~~~~IPPVTR~ll~~~v~vtll~~~g~i~p~~L~l~~~~v~~~-~QiWRLiTs~f~~g~~~l~llf~m~~l~~~s~~LE   84 (294)
                      .-+.++| |||.+++.+.++++.....-.++ .+.++++.++.+ +|+||++-+-|.+-. .-+.++.++.+| +.+.+|
T Consensus         6 ~g~~nmp-VTK~~~iT~~~~~vvagI~~~k~-~f~l~y~~~l~~y~qywrlL~~qF~~~n-~~e~~~~l~I~Y-~fR~~E   81 (323)
T KOG4463|consen    6 SGFHNMP-VTKAFVITSALFTVVAGIQGRKS-KFGLSYQDILEKYFQYWRLLMSQFAFSN-TPELMFGLYILY-YFRVFE   81 (323)
T ss_pred             Ccccccc-hHHHHHHHHHHHHHHHHhhhccc-ccccchhHHHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHH-HHHHHH
Confidence            3455665 99999999888888776544444 467778777765 899999999998866 889999999999 778999


Q ss_pred             cCCCCCCcchhHHHHHHHHHHHH----HHHhhh---hccccchH-HHHHHHHHHHhhhcCCC-ceEEEEEEeeeccc---
Q 022636           85 KGPFERRTADFLWMMIFGALSLL----VLSAIP---IFRSYFLG-ISLVFMLVYVWSREFPN-SQINIYGLVTLKAF---  152 (294)
Q Consensus        85 ~~~f~~~~~dyl~~ll~~~~~i~----l~a~~~---~~~~~fLg-~~l~~al~Yiwsr~nP~-~~v~lfGli~i~a~---  152 (294)
                      +...+.   +|+.++++..+...    +++.+.   .-+.-.+. .+++++..|-+--.-|- .-+.+||+ ++..|   
T Consensus        82 RlLGSh---ky~~fiv~s~~~~~l~~~il~~l~~~~~~nl~~~qp~~liFa~~~~~y~~ip~~~f~r~f~~-~f~dkni~  157 (323)
T KOG4463|consen   82 RLLGSH---KYSVFIVFSGTVSLLLEVILLSLLKDTTANLLTSQPYGLIFASFIPFYLDIPVSTFFRVFGV-NFSDKNIS  157 (323)
T ss_pred             HHhccc---cceeehhHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCceeeeeccceEEEecceeEEEeecc-ccccccee
Confidence            997544   46555555543322    222210   01111111 13566666554444453 33455653 55555   


Q ss_pred             cHHHHHHHHHHHhC-----------CCchhhhHHhhhhHHHhhhhhcccCCCCCCcccChHHHHHHH
Q 022636          153 YLPWAMLALDVIFG-----------SPLVPDLLGIIAGHLYYFLTVLHPLATGKNLLKTPKWVYPYF  208 (294)
Q Consensus       153 ylP~~lL~~~~l~~-----------~s~~~~l~GilvGhlY~fL~~v~P~~~g~~~l~tP~~l~~l~  208 (294)
                      .+|..=++++.-..           -+....+.|++.||+|..      ...|..--++|.++-..+
T Consensus       158 ~i~~~G~a~sh~~NkredksaveWk~~i~f~~~gLi~~~~~~~------~~agi~~~~~~~~~~~f~  218 (323)
T KOG4463|consen  158 FIYLAGVALSHSSNKREDKSAVEWKRSIFFGICGLIAGSLYRL------NIAGIRKAKFPEFVASFF  218 (323)
T ss_pred             eecccchhhhcCcccccccccceeecccccccchhhhhhHhhc------ccccccccccHHHHHhhh
Confidence            23333233322221           123566889999999976      233444445666665544

>KOG2289 consensus Rhomboid family proteins [Signal transduction mechanisms]

Probab=97.49  E-value=5.5e-05  Score=72.08  Aligned_cols=137  Identities=18%  Similarity=0.153  Sum_probs=82.2

Q ss_pred             eHHHHhhccceeeeeeeccccCcccHHHHHHHHHHHHHhHHhccCCCCCCcchhHHHHHHHHHHHHHHHhhhhccccchH
Q 022636           42 EYKLVFSKFQVWRLITNFFFLGTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFLG  121 (294)
Q Consensus        42 ~~~~v~~~~QiWRLiTs~f~~g~~~l~llf~m~~l~~~s~~LE~~~f~~~~~dyl~~ll~~~~~i~l~a~~~~~~~~fLg  121 (294)
                      .+....++.|+||++|+.+.|.+ -+|+++||......|-.||+.+..-|  =.+.|++ +++.-.+++.+.--+.+..|
T Consensus       109 ~i~~~~~r~E~WRllTym~LHaG-i~HL~~N~~~ql~iGi~LE~~~G~~R--iglIYl~-gg~aGSlls~l~d~~~~sVG  184 (316)
T KOG2289|consen  109 LIYKPVHRGELWRLLTYMWLHAG-IFHLLLNMLSQLFIGIPLEQVHGFLR--IGLIYLA-GGVAGSLLSSLFDPNSISVG  184 (316)
T ss_pred             eecChhhhchhHHHHHHHHHhcC-HHHHHHHHHHHHhccccHHhhcCceE--Eeeehhh-hhhhhHHHHHHhccCCceec
Confidence            34455677999999999999998 89999999999999999999973222  2333333 33333333332111121221


Q ss_pred             ---------HHHHHHHHHHhhhcCCCceEEEEEEeeeccccHHHHHHHHHHHhCC----CchhhhHHhhhhHHHhhhhhc
Q 022636          122 ---------ISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGS----PLVPDLLGIIAGHLYYFLTVL  188 (294)
Q Consensus       122 ---------~~l~~al~Yiwsr~nP~~~v~lfGli~i~a~ylP~~lL~~~~l~~~----s~~~~l~GilvGhlY~fL~~v  188 (294)
                               .+.+..++--|........          +.-.-.+++++++-+|.    +.+.|+.|.+.|-.+-|+.-+
T Consensus       185 ASggvfaLlgA~Ls~l~~Nw~~m~~~~~----------~l~~ll~Ii~i~l~~G~~~~~~~~~h~gg~~~G~~~~fil~~  254 (316)
T KOG2289|consen  185 ASGGVFALLGAHLSNLLTNWTIMKNKFA----------ALRTLLIIIFINLDLGFAPYVDNFAHIGGLLAGFLLGFVLHI  254 (316)
T ss_pred             ccHHHHHHHHHHHHHHHhhHHHhcchHH----------HHHHHHHHHHHHHhhccccceeccccccccCCCcchhHHhhh
Confidence                     3444445555654432221          11112223344555552    337888899999888888766


Q ss_pred             ccCC
Q 022636          189 HPLA  192 (294)
Q Consensus       189 ~P~~  192 (294)
                      -|..
T Consensus       255 ~g~~  258 (316)
T KOG2289|consen  255 GGQL  258 (316)
T ss_pred             ccce
Confidence            6654

>KOG2890 consensus Predicted membrane protein [Function unknown]

Probab=97.39  E-value=0.00043  Score=65.26  Aligned_cols=176  Identities=19%  Similarity=0.159  Sum_probs=112.9

Q ss_pred             hccchHHHHHHHHHHHHHHHHHhC-----ccccceeeeeHHHHhhccceeeeeeeccccCcccHHHHHHHHHHHHHhHHh
Q 022636            9 HSLPPICKAYGTLCVAVATVCSLG-----LLDLSILALEYKLVFSKFQVWRLITNFFFLGTFSINFGIRLLMIARYGVNL   83 (294)
Q Consensus         9 ~~IPPVTR~ll~~~v~vtll~~~g-----~i~p~~L~l~~~~v~~~~QiWRLiTs~f~~g~~~l~llf~m~~l~~~s~~L   83 (294)
                      .+.-++-++++...+...+.+..+     ...| .+.+-+..++  +++|+++|+.|+ +..-++.++++..+.-.|+.+
T Consensus        22 ~n~~vvvs~ic~~tlf~yi~sf~~~t~~l~~~p-~y~lvp~~~~--~~~WtliTs~fi-e~~vw~V~~sv~~L~v~G~~l   97 (326)
T KOG2890|consen   22 LNLEVVVSAICVLTLFGYILSFGNFTILLATLP-GYQLVPNALF--FFPWTLITSGFI-ELNVWDVLVSVLTLSVGGKFL   97 (326)
T ss_pred             hhchhHHHHHHHHHHHHHHHHHHHhHHHHHhcc-ccccCCcchh--hhhHHHHhcchh-hhhHHHHHHHHHheeecceee
Confidence            334445556665555444444321     1223 2333454444  599999999987 444899999999999999999


Q ss_pred             ccCCCCCCcchhHHHHHHHHHHH----HHHHhhhh--c-c-----ccchH-HHHHHHHHHHhhhcCCCceEEEEEEeeec
Q 022636           84 EKGPFERRTADFLWMMIFGALSL----LVLSAIPI--F-R-----SYFLG-ISLVFMLVYVWSREFPNSQINIYGLVTLK  150 (294)
Q Consensus        84 E~~~f~~~~~dyl~~ll~~~~~i----~l~a~~~~--~-~-----~~fLg-~~l~~al~Yiwsr~nP~~~v~lfGli~i~  150 (294)
                      |....   +.+++.+..+..+..    .+.+.+.+  . +     .++-| .+.+..++.+|-+..|+..+.---.-.+.
T Consensus        98 Ep~Wg---~~e~lkff~ivn~~~~l~v~v~~~l~Y~it~n~v~L~~~i~G~~gilaGilVa~kQllpd~~il~~~~~r~~  174 (326)
T KOG2890|consen   98 EPNWG---SLELLKFFAIVNGSTTLVVLVPALLLYMITDNHVYLYIPIHGTTGILAGILVAWKQLLPDTIILELKSGRFL  174 (326)
T ss_pred             ccCCC---CHHHHHHHHHhhchhHHHHHHHHHHHHHHhcCceEEEEEeccchHHHHHHHHHHHHHcCceeEEeccchhhh
Confidence            99983   445555544432221    11222111  1 1     23334 57888999999999999988654233444


Q ss_pred             cccHHHHHHHHHHHhC-------CCchhhhHHhhhhHHHhhhhhcccC
Q 022636          151 AFYLPWAMLALDVIFG-------SPLVPDLLGIIAGHLYYFLTVLHPL  191 (294)
Q Consensus       151 a~ylP~~lL~~~~l~~-------~s~~~~l~GilvGhlY~fL~~v~P~  191 (294)
                      .+-+|...++++++..       .++..-..|..++..|..+....|.
T Consensus       175 ~~~lP~~~l~~~~il~i~~f~~f~~l~s~~~g~~~sWtYLRfyq~h~~  222 (326)
T KOG2890|consen  175 YAHLPLLVLFLSLILSIITFLVFASLPSITFGVLVSWTYLRFYQRHPT  222 (326)
T ss_pred             hhhCCHHHHHHHHHHHHHHHHHhhhhHHHHHhhhhhhhhheecccCCc
Confidence            4558988777766543       3456677899999999988877773

>PF08551 DUF1751: Eukaryotic integral membrane protein (DUF1751); InterPro: IPR013861 This entry is found in eukaryotic integral membrane proteins

Probab=95.31  E-value=0.011  Score=47.13  Aligned_cols=55  Identities=24%  Similarity=0.188  Sum_probs=45.5

Q ss_pred             ceeeeeeeccccCcccHHHHHHHHHHHHHhHHhccCCCCCCcchhHHHHHHHHHHHHHH
Q 022636           51 QVWRLITNFFFLGTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVL  109 (294)
Q Consensus        51 QiWRLiTs~f~~g~~~l~llf~m~~l~~~s~~LE~~~f~~~~~dyl~~ll~~~~~i~l~  109 (294)
                      .+|+++|+.|+..+ .+.++++...+...|+.+|+...   +.+++.|+++..+...++
T Consensus         7 ~pWtl~T~~fve~~-i~~~l~~~~~l~~~g~~lE~~WG---s~E~lkFi~vv~~~tnl~   61 (99)
T PF08551_consen    7 YPWTLFTAGFVETN-IIGLLFSLLTLFYGGRYLEPIWG---SREFLKFILVVNVITNLL   61 (99)
T ss_pred             ehHHHHHHHHHHhH-HHHHHHHHHHHHHhhHHHHHhcC---hHHHHHHHHHHHHHhHHH
Confidence            79999999998765 89999999999999999999984   568888877766544433

Q12239 from SWISSPROT, a Saccharomyces cerevisiae (Baker's yeast) protein, has been shown to localise COP II vesicles [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	294
2xov_A	181	Rhomboid protease GLPG; membrane protein, hydrolas	99.55
2nr9_A	196	Protein GLPG homolog; intramembrane peptidase, rho	99.35

>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A*

Probab=99.55  E-value=4.8e-15  Score=128.46  Aligned_cols=167  Identities=17%  Similarity=0.193  Sum_probs=110.5

Q ss_pred             ccchHHHHHHHHHHHHHHHHHhCccc--cceeeeeHHHHhhccceeeeeeeccccCcccHHHHHHHHHHHHHhHHhccCC
Q 022636           10 SLPPICKAYGTLCVAVATVCSLGLLD--LSILALEYKLVFSKFQVWRLITNFFFLGTFSINFGIRLLMIARYGVNLEKGP   87 (294)
Q Consensus        10 ~IPPVTR~ll~~~v~vtll~~~g~i~--p~~L~l~~~~v~~~~QiWRLiTs~f~~g~~~l~llf~m~~l~~~s~~LE~~~   87 (294)
                      +.||+|+.++++|+++.++....-..  ..++.++++. .+++|+||++|+.|.|++ .+|+++||+.++.+|+.+|+..
T Consensus         2 ~~~pvt~~li~~~v~vf~~~~~~~~~~~~~~~~~~p~~-~~~~~~wrl~T~~f~H~~-~~Hl~~Nm~~l~~~g~~~E~~~   79 (181)
T 2xov_A            2 RAGPVTWVMMIACVVVFIAMQILGDQEVMLWLAWPFDP-TLKFEFWRYFTHALMHFS-LMHILFNLLWWWYLGGAVEKRL   79 (181)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHSSCCSG-GGTTCTTHHHHGGGCCCS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHhCcHHHHHhhcCChhh-ccCCCCHHHHHHHHHccC-HHHHHHHHHHHHHHHHHHHHHh
Confidence            57999999999999999987653211  1234455554 456899999999999998 6999999999999999999986


Q ss_pred             CCCCcchhHHHHHHHHHHHHHHHhhhhccccchH-HHHHHHH-HH--HhhhcCCCceEEEEEEeeeccccHHHHHHHHHH
Q 022636           88 FERRTADFLWMMIFGALSLLVLSAIPIFRSYFLG-ISLVFML-VY--VWSREFPNSQINIYGLVTLKAFYLPWAMLALDV  163 (294)
Q Consensus        88 f~~~~~dyl~~ll~~~~~i~l~a~~~~~~~~fLg-~~l~~al-~Y--iwsr~nP~~~v~lfGli~i~a~ylP~~lL~~~~  163 (294)
                         ++.+|+.+.+.+++...+.+.+ +.+.+..| ++.++++ .+  +.++++|+.++.    ++.+...+-.+.+++++
T Consensus        80 ---G~~~fl~~yl~~~i~~~l~~~~-~~~~~~vGaSGai~gl~g~~~~~~~~~p~~~~~----l~~~~~~~~~~~~~~~~  151 (181)
T 2xov_A           80 ---GSGKLIVITLISALLSGYVQQK-FSGPWFGGLSGVVYALMGYVWLRGERDPQSGIY----LQRGLIIFALIWIVAGW  151 (181)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHH-HHCSCCCCSHHHHHHHHHHHHHHHHHCGGGSCC----CCHHHHHHHHHHHHHHH
T ss_pred             ---ChHHHHHHHHHHHHHHHHHHHH-hcCCCceeHHHHHHHHHHHHHHHHhhCcCceee----eHHHHHHHHHHHHHHHH
Confidence               3567877766666555544433 22222333 3223222 22  346788887653    23333222222333444


Q ss_pred             Hh----CCCchhhhHHhhhhHHHhhhh
Q 022636          164 IF----GSPLVPDLLGIIAGHLYYFLT  186 (294)
Q Consensus       164 l~----~~s~~~~l~GilvGhlY~fL~  186 (294)
                      ..    +-+...|+.|+++|.++.++.
T Consensus       152 ~~~~~~~v~~~aHlgG~l~G~l~~~~~  178 (181)
T 2xov_A          152 FDLFGMSMANGAHIAGLAVGLAMAFVD  178 (181)
T ss_dssp             TTSSCCSSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHhccccchHHHHHHHHHHHHHHHHHH
Confidence            33    224599999999999987653

>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A

Probab=99.35  E-value=7.5e-13  Score=116.06  Aligned_cols=167  Identities=16%  Similarity=0.242  Sum_probs=109.5

Q ss_pred             hccchHHHHHHHHHHHHHHHHHhCccc--cceeeeeHHHHhhccceeeeeeeccccCcccHHHHHHHHHHHHHhHHhccC
Q 022636            9 HSLPPICKAYGTLCVAVATVCSLGLLD--LSILALEYKLVFSKFQVWRLITNFFFLGTFSINFGIRLLMIARYGVNLEKG   86 (294)
Q Consensus         9 ~~IPPVTR~ll~~~v~vtll~~~g~i~--p~~L~l~~~~v~~~~QiWRLiTs~f~~g~~~l~llf~m~~l~~~s~~LE~~   86 (294)
                      .+.||+|+.++++++++.++....-..  ..++.++++.+ .++|+||++|+.|.|++ .+|+++||+.++..|..+|+.
T Consensus         6 ~~~~pvt~~li~~~v~vfll~~~~~~~~~~~~~~~~p~~~-~~~~~wrl~T~~flH~~-~~Hl~~Nm~~l~~~G~~lE~~   83 (196)
T 2nr9_A            6 AQQGKITLILTALCVLIYIAQQLGFEDDIMYLMHYPAYEE-QDSEVWRYISHTLVHLS-NLHILFNLSWFFIFGGMIERT   83 (196)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHSCCCSGG-GGGCTTHHHHGGGCCSS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccHHHHHHHHHHHHHHHHHHcCcHHHHHhhcCCHhhc-ccCCcHHHHHHHHHccC-HHHHHHHHHHHHHHHHHHHHH
Confidence            467999999999999999987653211  12355666655 56899999999999998 899999999999999999998


Q ss_pred             CCCCCcchhHHHHHHHHHHHHHHHhhhhccccchH-HHHHHHHH-H--HhhhcCCCceEEEEEEeeeccccHHHHHHHHH
Q 022636           87 PFERRTADFLWMMIFGALSLLVLSAIPIFRSYFLG-ISLVFMLV-Y--VWSREFPNSQINIYGLVTLKAFYLPWAMLALD  162 (294)
Q Consensus        87 ~f~~~~~dyl~~ll~~~~~i~l~a~~~~~~~~fLg-~~l~~al~-Y--iwsr~nP~~~v~lfGli~i~a~ylP~~lL~~~  162 (294)
                      .   ++.+|+.+.+.+++...+.+.+ +.+....| ++.+++++ +  +..+++|+. +    .++.+...+-.+.++++
T Consensus        84 ~---G~~~~l~~yl~~~~~~~l~~~~-~~~~~~vGaSGai~gl~g~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~  154 (196)
T 2nr9_A           84 F---GSVKLLMLYVVASAITGYVQNY-VSGPAFFGLSGVVYAVLGYVFIRDKLNHHL-F----DLPEGFFTMLLVGIALG  154 (196)
T ss_dssp             H---CHHHHHHHHHHHHHHHHHHHHH-HHCSCCCCSHHHHHHHHHHHHHHHHSSTTS-C----CCCCSSTTTTTTTTTHH
T ss_pred             H---ChHHHHHHHHHHHHHHHHHHHH-hcCCCeeeHHHHHHHHHHHHHHHHHhcchh-h----cchHHHHHHHHHHHHHH
Confidence            6   3556766666665554444432 22222333 33333222 2  234566665 1    12444443333334445


Q ss_pred             HHhC-----CCchhhhHHhhhhHHHhhhh
Q 022636          163 VIFG-----SPLVPDLLGIIAGHLYYFLT  186 (294)
Q Consensus       163 ~l~~-----~s~~~~l~GilvGhlY~fL~  186 (294)
                      ++..     -+...|+.|+++|.++.++.
T Consensus       155 ~~~~~~~~~v~~~aHlgG~l~G~l~~~~~  183 (196)
T 2nr9_A          155 FISPLFGVEMGNAAHISGLIVGLIWGFID  183 (196)
T ss_dssp             HHSCSSCCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhccCCCccHHHHHHHHHHHHHHHHHH
Confidence            5432     24599999999999887654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	294
d3b45a1	180	GlpG {Escherichia coli [TaxId: 562]}	99.41
d2nr9a1	189	GlpG homolog HI0618 {Haemophilus influenzae [TaxId	99.4

>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG
species: Escherichia coli [TaxId: 562]

Probab=99.41  E-value=7.1e-14  Score=118.19  Aligned_cols=170  Identities=20%  Similarity=0.219  Sum_probs=101.7

Q ss_pred             hccchHHHHHHHHHHHHHHHHHhCcccc--ceeeeeHHHHhhccceeeeeeeccccCcccHHHHHHHHHHHHHhHHhccC
Q 022636            9 HSLPPICKAYGTLCVAVATVCSLGLLDL--SILALEYKLVFSKFQVWRLITNFFFLGTFSINFGIRLLMIARYGVNLEKG   86 (294)
Q Consensus         9 ~~IPPVTR~ll~~~v~vtll~~~g~i~p--~~L~l~~~~v~~~~QiWRLiTs~f~~g~~~l~llf~m~~l~~~s~~LE~~   86 (294)
                      ++.+|||..+++.++++.++.......+  ..+.++.+. .+++|+||++|+.|.|++ .+|+++||+.++..|+.+|+.
T Consensus         1 ~r~~pvT~~li~i~~~vf~~~~~~~~~~~~~~~~~~~~~-~~~g~~wrl~T~~f~H~~-~~Hl~~N~~~l~~~G~~lE~~   78 (180)
T d3b45a1           1 ERAGPVTWVMMIACVVVFIAMQILGDQEVMLWLAWPFDP-TLKFEFWRYFTHALMHFS-LMHILFNLLWWWYLGGAVEKR   78 (180)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHSSCCSG-GGTTCGGGGTGGGGCCCS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHhCcHHHHHHHcCCCcc-cccCchHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHHh
Confidence            3679999999999999988765422222  223334444 456899999999999988 999999999999999999998


Q ss_pred             CCCCCcchhHHHHHHHHHHHHHHHhhhhccccchH-HHHHHHH-HHHhh--hcCCCceEEEEEEeeeccccHHHHHHHHH
Q 022636           87 PFERRTADFLWMMIFGALSLLVLSAIPIFRSYFLG-ISLVFML-VYVWS--REFPNSQINIYGLVTLKAFYLPWAMLALD  162 (294)
Q Consensus        87 ~f~~~~~dyl~~ll~~~~~i~l~a~~~~~~~~fLg-~~l~~al-~Yiws--r~nP~~~v~lfGli~i~a~ylP~~lL~~~  162 (294)
                      ..   +.+++...+.++++..+.+.+ +.+....| ++.++++ .+.+.  .++|....  . . +.....+-++.+...
T Consensus        79 ~G---~~~~~~~~~~~~~~g~l~~~~-~~~~~~~G~sg~i~~l~~~~~~~~~~~~~~~~--~-~-~~~~~~~~~~~~~~~  150 (180)
T d3b45a1          79 LG---SGKLIVITLISALLSGYVQQK-FSGPWFGGLSGVVYALMGYVWLRGERDPQSGI--Y-L-QRGLIIFALIWIVAG  150 (180)
T ss_dssp             HC---HHHHHHHHHHHHHHHHHHHHH-HHCSCCCCSHHHHHHHHHHHHHHHHHCGGGSC--C-C-CHHHHHHHHHHHHHH
T ss_pred             cc---chhheeeeeHHHHHHHHHHHH-HhccccccccchHHHHHHHHHHHhhhcchhHH--h-h-HHHHHHHHHHHHHHH
Confidence            63   456665555555544444433 22222222 2222222 22222  22332211  1 1 121122222222222


Q ss_pred             HHhC--C--CchhhhHHhhhhHHHhhhhhc
Q 022636          163 VIFG--S--PLVPDLLGIIAGHLYYFLTVL  188 (294)
Q Consensus       163 ~l~~--~--s~~~~l~GilvGhlY~fL~~v  188 (294)
                      +...  .  +...|+.|+++|.++.+..++
T Consensus       151 ~~~~~~~~v~~~aHlgG~l~G~~~~~~~~~  180 (180)
T d3b45a1         151 WFDLFGMSMANGAHIAGLAVGLAMAFVDSL  180 (180)
T ss_dssp             HTTSSCCSSCHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHhccCchHHHHHHHHHHHHHHHHHHHHC
Confidence            2221  1  338899999999999987653

>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]}

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG homolog HI0618
species: Haemophilus influenzae [TaxId: 727]

Probab=99.40  E-value=2.7e-14  Score=122.10  Aligned_cols=172  Identities=16%  Similarity=0.173  Sum_probs=107.5

Q ss_pred             HhccchHHHHHHHHHHHHHHHHHhCcccc-ceeeeeHHHHhhccceeeeeeeccccCcccHHHHHHHHHHHHHhHHhccC
Q 022636            8 YHSLPPICKAYGTLCVAVATVCSLGLLDL-SILALEYKLVFSKFQVWRLITNFFFLGTFSINFGIRLLMIARYGVNLEKG   86 (294)
Q Consensus         8 ~~~IPPVTR~ll~~~v~vtll~~~g~i~p-~~L~l~~~~v~~~~QiWRLiTs~f~~g~~~l~llf~m~~l~~~s~~LE~~   86 (294)
                      +.+.+|||..++++|+++.++...+...+ ..+...+....+++|+||++|+.|.|++ .+|+++||+.++..|..+|+.
T Consensus         2 l~~~~pvt~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~wrl~T~~f~H~~-~~Hl~~N~~~l~~~g~~~E~~   80 (189)
T d2nr9a1           2 LAQQGKITLILTALCVLIYIAQQLGFEDDIMYLMHYPAYEEQDSEVWRYISHTLVHLS-NLHILFNLSWFFIFGGMIERT   80 (189)
T ss_dssp             CTTSCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHSCCCSGGGGGCTTHHHHGGGCCSS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHccccccccCchHHhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHH
Confidence            35678999999999999999887654333 2233333445567899999999999988 899999999999999999998


Q ss_pred             CCCCCcchhHHHHHHHHHHHHHHHhhhhccccchH-HHHHHHHHHHhhhcCCCceEEEEEEeeeccccHHH--HHHHHHH
Q 022636           87 PFERRTADFLWMMIFGALSLLVLSAIPIFRSYFLG-ISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPW--AMLALDV  163 (294)
Q Consensus        87 ~f~~~~~dyl~~ll~~~~~i~l~a~~~~~~~~fLg-~~l~~al~Yiwsr~nP~~~v~lfGli~i~a~ylP~--~lL~~~~  163 (294)
                      .   ++.+++...+.++++..++... ..+.+..| ++.++++.-.+....+..+.. +   .++.+.+..  +.+++.+
T Consensus        81 ~---G~~~~~~~~~~~~~~~~l~~~~-~~~~~~vGaSG~v~gl~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~  152 (189)
T d2nr9a1          81 F---GSVKLLMLYVVASAITGYVQNY-VSGPAFFGLSGVVYAVLGYVFIRDKLNHHL-F---DLPEGFFTMLLVGIALGF  152 (189)
T ss_dssp             H---CHHHHHHHHHHHHHHHHHHHHH-HHCSCCCCSHHHHHHHHHHHHHHHHSSTTS-C---CCCCSSTTTTTTTTTHHH
T ss_pred             H---HHHhhhhHHHHHHHHHHHHHHh-cCCCCcccchHHHHHHHHHHHHHHHHhhhH-h---ccHHHHHHHHHHHHHHHH
Confidence            6   3556655555444444333332 23344443 444455443332222222211 1   122222222  2233344


Q ss_pred             HhC---C--CchhhhHHhhhhHHHhhhhhc
Q 022636          164 IFG---S--PLVPDLLGIIAGHLYYFLTVL  188 (294)
Q Consensus       164 l~~---~--s~~~~l~GilvGhlY~fL~~v  188 (294)
                      +..   .  +...|+.|+++|.++.++...
T Consensus       153 ~~~~~~~~v~~~aHl~G~l~G~~~g~~~~~  182 (189)
T d2nr9a1         153 ISPLFGVEMGNAAHISGLIVGLIWGFIDSK  182 (189)
T ss_dssp             HSCSSCCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhccCCChHHHHHHHHHHHHHHHHHHHHc
Confidence            433   1  348999999999999876543