Citrus Sinensis ID: 022637

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290----
MGKQTTKAMEEYMDGHIQHSRDKNVISKSCRLRFSVGPFTIPSPISEDAKQLILYLFDDKLNTMEIVVDIGDNSITRSSMRTLLPGEWIDGDIITMYADYKNMKEAEKDVTSPRCWFLPTYYSQAALADWSSLNFAQAAGFRDRYMSRLDTCEKIYVPINSDGHWYMLVVDISHATATIWDSLESPSRREKMINESLAILASLDFVLRQEARALFCNQFTFLNFQICRQAGLPQQPNGFDCGYYVMKYMDSPCIVVHDSYQHDSDHARLLLALYLVQSPLNKIRCRLIQEARKL
cccccHHHHHHHHHHHccccccHHHHHHHHHcccccccccccccccHHHHHHHHHHHHcccccccEEEccccEEEEcccccccccccccHHHHHHHHHHHHHHHHHHcccccccEEEcccccHHHHHcccccHHHHHHHHHHHHHcccccccccEEEEccccccEEEEEEEcccccEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEcccccccccccccHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHcc
ccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHcccccccEEEEccccEEEcHHHHHHHcccccccHHHHHHHHHHHHHHcccccccccEEEEEEccEcHHHHcccccccHHHHHHHHHHcccccccccEEEEEEEcccEEEEEEEEccccEEEEEEcccccccccHHHHHHHHHHHHHHHHHccccHHcccccccccccccccccccccccccccHHHHHEEEHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
MGKQTTKAMEEYMDGhiqhsrdknviskscrlrfsvgpftipspisEDAKQLILYLFDDKLNTMEIVVDIgdnsitrssmrtllpgewidgdiITMYADYKNmkeaekdvtsprcwflptyysqaaLADWSSLNFAQAAGFRDRYMSRLdtcekiyvpinsdgHWYMLVVDISHATATIwdslespsrrEKMINESLAILASLDFVLRQEARALFCNQFTFLNFQICrqaglpqqpngfdcGYYVMKymdspcivvhdsyqhdsDHARLLLALYLVQSPLNKIRCRLIQEARKL
MGKQTTKAMEEYmdghiqhsrdknvISKSCRLRFSVGpftipspiseDAKQLILYLFDDKLNTMEIVVDigdnsitrssmrtllpgewidgDIITMYADYKNMKEAEKDVTSPRCWFLPTYYSQAALADWSSLNFAQAAGFRDRYMSRLDTCEKIYVPINSDGHWYMLVVDISHATATIWDSLESPSRREKMINESLAILASLDFVLRQEARALFCNQFTFLNFQICRQAGLPQQPNGFDCGYYVMKYMDSPCIVVHDSYQHDSDHARLLLALYlvqsplnkIRCRLIQEARKL
MGKQTTKAMEEYMDGHIQHSRDKNVISKSCRLRFSVGPFTIPSPISEDAKQLILYLFDDKLNTMEIVVDIGDNSITRSSMRTLLPGEWIDGDIITMYADYKNMKEAEKDVTSPRCWFLPTYYSQAALADWSSLNFAQAAGFRDRYMSRLDTCEKIYVPINSDGHWYMLVVDISHATATIWDSLESPSRREKMINESLAILASLDFVLRQEARALFCNQFTFLNFQICRQAGLPQQPNGFDCGYYVMKYMDSPCIVVHDSYQHDSDHARLLLALYLVQSPLNKIRCRLIQEARKL
************************VISKSCRLRFSVGPFTIPSPISEDAKQLILYLFDDKLNTMEIVVDIGDNSITRSSMRTLLPGEWIDGDIITMYADYKNMKEAEKDVTSPRCWFLPTYYSQAALADWSSLNFAQAAGFRDRYMSRLDTCEKIYVPINSDGHWYMLVVDISHATATIWDSL********MINESLAILASLDFVLRQEARALFCNQFTFLNFQICRQAGLPQQPNGFDCGYYVMKYMDSPCIVVHDSYQHDSDHARLLLALYLVQSPLNKIRCRLI******
**********************************************EDAKQLILYLFDDKLNTMEIVVDIGDNSITRSSMRTLLPGEWIDGDIITMYADYKNMKEA*KDVTSPRCWFLPTYYSQAALADWSSLNFAQAAGFRDRYMSRLDTCEKIYVPINSDGHWYMLVVDISHATATIWD************NESLAILASLDFVLRQEARALFCNQFTFLNFQICRQAGLPQQPNGFDCGYYVMKYMDSPCIVVHDSYQHDSDHARLLLALYLVQSPLNKIRCRLIQEARK*
********MEEYMDGHIQHSRDKNVISKSCRLRFSVGPFTIPSPISEDAKQLILYLFDDKLNTMEIVVDIGDNSITRSSMRTLLPGEWIDGDIITMYADYKNMKEAEKDVTSPRCWFLPTYYSQAALADWSSLNFAQAAGFRDRYMSRLDTCEKIYVPINSDGHWYMLVVDISHATATIWDSLESPSRREKMINESLAILASLDFVLRQEARALFCNQFTFLNFQICRQAGLPQQPNGFDCGYYVMKYMDSPCIVVHDSYQHDSDHARLLLALYLVQSPLNKIRCRLIQEARKL
*****TKAMEEYMDGHIQHSRDKNV***SCRLRFSVGPFTIPSPISEDAKQLILYLFDDKLNTMEIVVDIGDNSITRSSMRTLLPGEWIDGDIITMYADYKNMKEAEKDVTSPRCWFLPTYYSQAALADWSSLNFAQAAGFRDRYMSRLDTCEKIYVPINSDGHWYMLVVDISHATATIWDSLESPSRREKMINESLAILASLDFVLRQEARALFCNQFTFLNFQICRQAGLPQQPNGFDCGYYVMKYMDSPCIVVHDSYQHDSDHARLLLALYLVQSPLNKIRCRLIQEARKL
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGKQTTKAMEEYMDGHIQHSRDKNVISKSCRLRFSVGPFTIPSPISEDAKQLILYLFDDKLNTMEIVVDIGDNSITRSSMRTLLPGEWIDGDIITMYADYKNMKEAEKDVTSPRCWFLPTYYSQAALADWSSLNFAQAAGFRDRYMSRLDTCEKIYVPINSDGHWYMLVVDISHATATIWDSLESPSRREKMINESLAILASLDFVLRQEARALFCNQFTFLNFQICRQAGLPQQPNGFDCGYYVMKYMDSPCIVVHDSYQHDSDHARLLLALYLVQSPLNKIRCRLIQEARKL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query294 2.2.26 [Sep-21-2011]
Q8GYL3502 Ubiquitin-like-specific p yes no 0.663 0.388 0.245 1e-11
Q94F30489 Ubiquitin-like-specific p no no 0.741 0.445 0.232 5e-10
Q02724621 Ubiquitin-like-specific p yes no 0.493 0.233 0.289 1e-09
O65278341 Putative ubiquitin-like-s no no 0.693 0.598 0.226 2e-08
P59110640 Sentrin-specific protease yes no 0.642 0.295 0.255 3e-08
Q9P0U3644 Sentrin-specific protease yes no 0.642 0.293 0.255 3e-08
Q5RBB1645 Sentrin-specific protease yes no 0.642 0.293 0.255 4e-08
Q9HC62589 Sentrin-specific protease no no 0.520 0.259 0.239 0.0002
Q8RWN0571 Ubiquitin-like-specific p no no 0.663 0.341 0.232 0.0002
Q09353697 Sentrin-specific protease yes no 0.557 0.235 0.231 0.0003
>sp|Q8GYL3|ULP1A_ARATH Ubiquitin-like-specific protease 1A OS=Arabidopsis thaliana GN=ULP1A PE=2 SV=2 Back     alignment and function desciption
 Score = 70.9 bits (172), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 94/212 (44%), Gaps = 17/212 (8%)

Query: 44  PISEDAKQLILYLFDDKLNTMEIVVDIGDNSITRSSMRTLLPGEWIDGDIITMYADYKNM 103
           P+S + +  +   F    + + +     +  IT   +R L PG+W++ ++I +Y      
Sbjct: 271 PLSREEETAVRRAFSANDSNILVTHKNSNIDITGKILRCLKPGKWLNDEVINLYMVLLKE 330

Query: 104 KEAEKDVTSPRCWFLPTYYSQAALADWSSLNFAQAAGFRD--RYMSRLDTCEKIYVPINS 161
           +EA +     +C F  T++    +   +  N+     +    R    L  C+KI++PI+ 
Sbjct: 331 REAREPKKFLKCHFFNTFFFTKLVNSATGYNYGAVRRWTSMKRLGYHLKDCDKIFIPIHM 390

Query: 162 DGHWYMLVVDISHATATIWDSLESPSRREKMINESLAILASLDFVLRQEARALFCNQFTF 221
           + HW + V++I        DS +    RE  I ++LA     +   + E           
Sbjct: 391 NIHWTLAVINIKDQKFQYLDSFKG---REPKILDALARYFVDEVRDKSEVD--------- 438

Query: 222 LNFQICRQA---GLPQQPNGFDCGYYVMKYMD 250
           L+    RQ     LP Q NGFDCG +++KY+D
Sbjct: 439 LDVSRWRQEFVQDLPMQRNGFDCGMFMVKYID 470
Protease that catalyzes two essential functions in the SUMO pathway: processing of full-length SUMOs to their mature forms and deconjugation of SUMO from targeted proteins. Cleaves precursors of SUM1 and SUM2, and very inefficiently of SUM3. Seems to be the only ULP1 able to cleave SUM3 precursors. Cleaves SUMO peptides better than SUMO-conjugated proteins.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 2EC: .EC: 6EC: 8
>sp|Q94F30|ESD4_ARATH Ubiquitin-like-specific protease ESD4 OS=Arabidopsis thaliana GN=ESD4 PE=1 SV=1 Back     alignment and function description
>sp|Q02724|ULP1_YEAST Ubiquitin-like-specific protease 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ULP1 PE=1 SV=1 Back     alignment and function description
>sp|O65278|ULP1B_ARATH Putative ubiquitin-like-specific protease 1B OS=Arabidopsis thaliana GN=ULP1B PE=5 SV=2 Back     alignment and function description
>sp|P59110|SENP1_MOUSE Sentrin-specific protease 1 OS=Mus musculus GN=Senp1 PE=2 SV=1 Back     alignment and function description
>sp|Q9P0U3|SENP1_HUMAN Sentrin-specific protease 1 OS=Homo sapiens GN=SENP1 PE=1 SV=2 Back     alignment and function description
>sp|Q5RBB1|SENP1_PONAB Sentrin-specific protease 1 OS=Pongo abelii GN=SENP1 PE=2 SV=1 Back     alignment and function description
>sp|Q9HC62|SENP2_HUMAN Sentrin-specific protease 2 OS=Homo sapiens GN=SENP2 PE=1 SV=3 Back     alignment and function description
>sp|Q8RWN0|ULP1C_ARATH Ubiquitin-like-specific protease 1C OS=Arabidopsis thaliana GN=ULP1C PE=1 SV=1 Back     alignment and function description
>sp|Q09353|SENP_CAEEL Sentrin-specific protease OS=Caenorhabditis elegans GN=ulp-1 PE=2 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query294
224132816191 predicted protein [Populus trichocarpa] 0.503 0.774 0.354 2e-17
224115366191 predicted protein [Populus trichocarpa] 0.506 0.780 0.352 4e-17
224157122199 predicted protein [Populus trichocarpa] 0.659 0.974 0.257 9e-17
224115352 567 predicted protein [Populus trichocarpa] 0.523 0.271 0.272 3e-15
224057408 1571 predicted protein [Populus trichocarpa] 0.530 0.099 0.268 3e-15
357483793 501 hypothetical protein MTR_5g022270 [Medic 0.819 0.481 0.287 3e-13
226491998 500 SUMO protease [Zea mays] gi|195607252|gb 0.683 0.402 0.247 3e-10
410076034 573 hypothetical protein KAFR_0B01650 [Kazac 0.534 0.273 0.305 4e-10
242057335 498 hypothetical protein SORBIDRAFT_03g01393 0.683 0.403 0.224 4e-10
297833464 468 hypothetical protein ARALYDRAFT_896836 [ 0.568 0.356 0.280 5e-10
>gi|224132816|ref|XP_002327887.1| predicted protein [Populus trichocarpa] gi|222837296|gb|EEE75675.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/155 (35%), Positives = 84/155 (54%), Gaps = 7/155 (4%)

Query: 141 FRDRYMSRLDTCEKIYVPI--NSDGHWYMLVVDISHATATIWDSL--ESPSRREKMINES 196
           FR+ YMS L +CEK+YVP+      H+Y+ V+ +      IWDSL   S S  +K +   
Sbjct: 2   FRENYMSALFSCEKMYVPVFDKERRHFYLFVLHMKKQVVEIWDSLAKSSGSSVDKRLPNM 61

Query: 197 LAILASLDFVLRQEARALFCNQFTFLNFQICRQAGLPQQPNGFDCGYYVMKYMDSPCIVV 256
           LAIL   D +   + +  + + ++F +F + R   +PQQ NG+DCG YV+K+M +P    
Sbjct: 62  LAIL---DILFEDDIQQNYPDGWSFASFSVDRSPNVPQQTNGYDCGVYVIKFMLAPEEAT 118

Query: 257 HDSYQHDSDHARLLLALYLVQSPLNKIRCRLIQEA 291
              +  DSD  RL + L L+   +N  R  L  +A
Sbjct: 119 QPDFVFDSDTERLDVVLRLLDGNVNSCRNELAAKA 153

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224115366|ref|XP_002332178.1| predicted protein [Populus trichocarpa] gi|222832426|gb|EEE70903.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224157122|ref|XP_002337805.1| predicted protein [Populus trichocarpa] gi|222869833|gb|EEF06964.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224115352|ref|XP_002332175.1| predicted protein [Populus trichocarpa] gi|222832423|gb|EEE70900.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224057408|ref|XP_002299224.1| predicted protein [Populus trichocarpa] gi|222846482|gb|EEE84029.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357483793|ref|XP_003612183.1| hypothetical protein MTR_5g022270 [Medicago truncatula] gi|355513518|gb|AES95141.1| hypothetical protein MTR_5g022270 [Medicago truncatula] Back     alignment and taxonomy information
>gi|226491998|ref|NP_001147104.1| SUMO protease [Zea mays] gi|195607252|gb|ACG25456.1| SUMO protease [Zea mays] Back     alignment and taxonomy information
>gi|410076034|ref|XP_003955599.1| hypothetical protein KAFR_0B01650 [Kazachstania africana CBS 2517] gi|372462182|emb|CCF56464.1| hypothetical protein KAFR_0B01650 [Kazachstania africana CBS 2517] Back     alignment and taxonomy information
>gi|242057335|ref|XP_002457813.1| hypothetical protein SORBIDRAFT_03g013930 [Sorghum bicolor] gi|241929788|gb|EES02933.1| hypothetical protein SORBIDRAFT_03g013930 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|297833464|ref|XP_002884614.1| hypothetical protein ARALYDRAFT_896836 [Arabidopsis lyrata subsp. lyrata] gi|297330454|gb|EFH60873.1| hypothetical protein ARALYDRAFT_896836 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query294
TAIR|locus:2130864489 ESD4 "EARLY IN SHORT DAYS 4" [ 0.741 0.445 0.248 1.7e-11
TAIR|locus:2077632502 ULP1A "UB-like protease 1A" [A 0.673 0.394 0.248 4.1e-11
DICTYBASE|DDB_G0292290769 DDB_G0292290 "Sentrin-specific 0.751 0.287 0.230 1.9e-10
UNIPROTKB|F1NYU6247 F1NYU6 "Uncharacterized protei 0.547 0.651 0.261 6.1e-08
UNIPROTKB|E1BYD7454 E1BYD7 "Uncharacterized protei 0.649 0.420 0.246 6.3e-08
RGD|1310275640 Senp1 "SUMO1/sentrin specific 0.632 0.290 0.273 1.1e-07
FB|FBgn0031208480 CG11023 [Drosophila melanogast 0.741 0.454 0.236 1.2e-07
UNIPROTKB|F1SGU9628 SENP1 "Uncharacterized protein 0.639 0.299 0.261 2.4e-07
MGI|MGI:2445054640 Senp1 "SUMO1/sentrin specific 0.639 0.293 0.261 2.4e-07
UNIPROTKB|Q9P0U3644 SENP1 "Sentrin-specific protea 0.639 0.291 0.261 2.4e-07
TAIR|locus:2130864 ESD4 "EARLY IN SHORT DAYS 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 181 (68.8 bits), Expect = 1.7e-11, P = 1.7e-11
 Identities = 59/237 (24%), Positives = 106/237 (44%)

Query:    17 IQHSRDKNVISKSCRLRFSVGPFTIPSPISEDAKQLILYLFDDKLNTMEIVVDIGDN-SI 75
             ++ SR K V  K  R+     PF    P++ED +  +   F  +     +      N  I
Sbjct:   237 LRQSRPKTV-EK--RVEVPREPFI---PLTEDEEAEVYRAFSGRNRRKVLATHENSNIDI 290

Query:    76 TRSSMRTLLPGEWIDGDIITMYADYKNMKEAEKDVTSPRCWFLPTYYSQAALADWSSLNF 135
             T   ++ L P  W++ ++I +Y +    +E  +     +C +  T++ +  ++D S  NF
Sbjct:   291 TGEVLQCLTPSAWLNDEVINVYLELLKERETREPKKYLKCHYFNTFFYKKLVSD-SGYNF 349

Query:   136 AQAAGFR-DRYMS-RLDTCEKIYVPINSDGHWYMLVVDISHATATIWDSLESPSRREKMI 193
                  +   R +   L  C+ I+VPI+   HW + V++   +     DSL      + MI
Sbjct:   350 KAVRRWTTQRKLGYALIDCDMIFVPIHRGVHWTLAVINNRESKLLYLDSLNGV---DPMI 406

Query:   194 NESLAILASLDFVLRQEARALFCNQFTFLNFQICRQAGLPQQPNGFDCGYYVMKYMD 250
               +LA     D    +  + +  N +  + F       LPQQ NG+DCG +++KY+D
Sbjct:   407 LNALAKYMG-DEANEKSGKKIDANSWD-MEFV----EDLPQQKNGYDCGMFMLKYID 457
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0006508 "proteolysis" evidence=IEA;ISS
GO:0008234 "cysteine-type peptidase activity" evidence=IEA;ISS
GO:0009909 "regulation of flower development" evidence=RCA;IMP
GO:0009911 "positive regulation of flower development" evidence=IMP
GO:0016929 "SUMO-specific protease activity" evidence=IDA
GO:0016926 "protein desumoylation" evidence=IDA
GO:0006406 "mRNA export from nucleus" evidence=RCA
GO:0010074 "maintenance of meristem identity" evidence=RCA
GO:0010413 "glucuronoxylan metabolic process" evidence=RCA
GO:0045492 "xylan biosynthetic process" evidence=RCA
TAIR|locus:2077632 ULP1A "UB-like protease 1A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0292290 DDB_G0292290 "Sentrin-specific protease 1" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|F1NYU6 F1NYU6 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E1BYD7 E1BYD7 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
RGD|1310275 Senp1 "SUMO1/sentrin specific peptidase 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
FB|FBgn0031208 CG11023 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|F1SGU9 SENP1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:2445054 Senp1 "SUMO1/sentrin specific peptidase 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q9P0U3 SENP1 "Sentrin-specific protease 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.220.691
3rd Layer3.4.22.68LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
grail3.0064012001
hypothetical protein (191 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query294
pfam02902216 pfam02902, Peptidase_C48, Ulp1 protease family, C- 1e-15
PLN03189490 PLN03189, PLN03189, Protease specific for SMALL UB 2e-13
COG5160578 COG5160, ULP1, Protease, Ulp1 family [Posttranslat 1e-11
>gnl|CDD|217278 pfam02902, Peptidase_C48, Ulp1 protease family, C-terminal catalytic domain Back     alignment and domain information 
 Score = 73.7 bits (181), Expect = 1e-15
 Identities = 37/99 (37%), Positives = 52/99 (52%), Gaps = 3/99 (3%)

Query: 152 CEKIYVPINSDG-HWYMLVVDISHATATIWDSLESPSRREKMINESLAILASLDFVLRQE 210
            + IY+PIN DG HW +L++++   T TI DSL S    E +      I   L + L  E
Sbjct: 83  VDIIYIPINWDGKHWVLLIINLPKKTITILDSLISL-HTEAVKKRIRPIDNMLPY-LMSE 140

Query: 211 ARALFCNQFTFLNFQICRQAGLPQQPNGFDCGYYVMKYM 249
           A     +      F+I R   +PQQPN  DCG YV+K++
Sbjct: 141 ALKKEQDDPDLTPFEIKRLTKVPQQPNSGDCGPYVLKFI 179

This domain contains the catalytic triad Cys-His-Asn. Length = 216
>gnl|CDD|215622 PLN03189, PLN03189, Protease specific for SMALL UBIQUITIN-RELATED MODIFIER (SUMO); Provisional Back     alignment and domain information
>gnl|CDD|227489 COG5160, ULP1, Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 294
KOG0778511 consensus Protease, Ulp1 family [Posttranslational 100.0
PLN03189490 Protease specific for SMALL UBIQUITIN-RELATED MODI 100.0
COG5160578 ULP1 Protease, Ulp1 family [Posttranslational modi 100.0
PF02902216 Peptidase_C48: Ulp1 protease family, C-terminal ca 100.0
KOG3246223 consensus Sentrin-specific cysteine protease (Ulp1 99.98
KOG0779595 consensus Protease, Ulp1 family [Posttranslational 99.4
PF03290423 Peptidase_C57: Vaccinia virus I7 processing peptid 97.84
PRK11836403 deubiquitinase; Provisional 97.13
PRK14848317 deubiquitinase SseL; Provisional 96.97
PF00770183 Peptidase_C5: Adenovirus endoprotease; InterPro: I 96.71
PRK15371287 effector protein YopJ; Provisional 90.7
PF03421177 YopJ: YopJ Serine/Threonine acetyltransferase; Int 81.28
>KOG0778 consensus Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=2e-55  Score=408.50  Aligned_cols=222  Identities=26%  Similarity=0.432  Sum_probs=205.9

Q ss_pred             CCCCCHHHHHHHHHHhccCCCCcceeeecCCeEEehhhhcccCCCCcccHHHHHHHHHHHhhhhhhhccCCCceEEccch
Q 022637           42 PSPISEDAKQLILYLFDDKLNTMEIVVDIGDNSITRSSMRTLLPGEWIDGDIITMYADYKNMKEAEKDVTSPRCWFLPTY  121 (294)
Q Consensus        42 ~~~ls~~~~~~~~~~l~~~~~~~~~l~~~~~~~l~~~dl~~L~~~~wLnD~vI~~~~~~ll~~~~~~~~~~~~~~~~~t~  121 (294)
                      +.+|++++...++.++... +.+++++..+++.||.+||.||.+++||||+||||||++ |.+++......++||+||||
T Consensus       288 ~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~i~It~~dl~tl~~~~WLNDevINfYm~l-l~ers~~~~~yp~~h~FnTF  365 (511)
T KOG0778|consen  288 FPPLTEEREAQVQRAFSSR-NSTEILVTHFNIDITGKDLQTLRPGNWLNDEVINFYMEL-LKERSKKDSKYPKVHAFNTF  365 (511)
T ss_pred             cccccHHHHHHHHHHhccC-CcccceehhccccccHHHHhhccCccchhHHHHHHHHHH-HHhhccccCCCceEEEEech
Confidence            4699999999999999764 889999999999999999999999999999999999999 99998876669999999999


Q ss_pred             HHHHhhccccccchhhhhhhhhhcccCCCCCCeeEeeecCCCceeEEEEeecCceEEEecCCCCCCchhhhhHHHHHHHH
Q 022637          122 YSQAALADWSSLNFAQAAGFRDRYMSRLDTCEKIYVPINSDGHWYMLVVDISHATATIWDSLESPSRREKMINESLAILA  201 (294)
Q Consensus       122 f~~~l~~~~~~~~~~~v~r~~~~~~~~l~~~d~IfiPIn~~~HW~L~vv~~~~~~i~~~DSl~~~~~~~~~l~~~~~i~~  201 (294)
                      ||++|..    +||++|+|||+  ++++|++|+||||||-+.||+|+|||.++++|.|||||++.....         +.
T Consensus       366 Fy~kL~~----~gy~~VkRWTk--~v~if~~d~i~vPIH~~vHW~l~vid~r~k~i~y~DS~~~~~nr~---------~~  430 (511)
T KOG0778|consen  366 FYTKLVG----RGYAGVKRWTK--KVDIFDKDIIFVPIHLGVHWCLAVIDLREKTIEYYDSLGGGPNRI---------CD  430 (511)
T ss_pred             hhhhhhh----cchHHHHhHhh--ccCccccceeEeeeecCceEEEEEEEcccceEEEeeccCCCCcch---------HH
Confidence            9999998    89999999999  899999999999999999999999999999999999999775554         57


Q ss_pred             HHHHHHHHHHHHhhCCCCCCCcceeccCCccCCCCCCCCcHHHHHHhhHhhccccCCCC-CCCcHHHHHHHHHHHHcCCc
Q 022637          202 SLDFVLRQEARALFCNQFTFLNFQICRQAGLPQQPNGFDCGYYVMKYMDSPCIVVHDSY-QHDSDHARLLLALYLVQSPL  280 (294)
Q Consensus       202 ~l~~~l~~e~~~k~~~~~~~~~w~~~~~~~~PqQ~Ng~DCGvfvl~~~e~~~~~~~~~~-~~d~~~~R~~l~~~l~~~~~  280 (294)
                      .|.+||.+|+.+|.+.++|++.|.+....++|||.||+|||+|+|+|++|++.+.+..| |.|||.+|.+||.||++..+
T Consensus       431 aL~~Yl~~E~~~k~~~~~d~s~w~~~~~~~iP~Q~Ng~DCG~f~c~~~~~~s~~~p~~ftq~dmp~fR~~m~~eI~~~~l  510 (511)
T KOG0778|consen  431 ALAKYLQDESRDKSKKDFDVSGWTIEFVQNIPQQRNGSDCGMFVCKYADYISRDVPLTFTQQDMPYFRKKMAKEILHLKL  510 (511)
T ss_pred             HHHHHHHHHHhhhhcCCCCccchhhhhhhccccccCCCccceEEeeechhhccCCCcccChhhhHHHHHHHHHHHHhhhc
Confidence            89999999999999999999999998888999999999999999999999987777666 46799999999999998754

>PLN03189 Protease specific for SMALL UBIQUITIN-RELATED MODIFIER (SUMO); Provisional Back     alignment and domain information
>COG5160 ULP1 Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF02902 Peptidase_C48: Ulp1 protease family, C-terminal catalytic domain This family belongs to family C48 of the peptidase classification Back     alignment and domain information
>KOG3246 consensus Sentrin-specific cysteine protease (Ulp1 family) [General function prediction only] Back     alignment and domain information
>KOG0779 consensus Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF03290 Peptidase_C57: Vaccinia virus I7 processing peptidase; InterPro: IPR004970 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PRK11836 deubiquitinase; Provisional Back     alignment and domain information
>PRK14848 deubiquitinase SseL; Provisional Back     alignment and domain information
>PF00770 Peptidase_C5: Adenovirus endoprotease; InterPro: IPR000855 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PRK15371 effector protein YopJ; Provisional Back     alignment and domain information
>PF03421 YopJ: YopJ Serine/Threonine acetyltransferase; InterPro: IPR005083 The infection of mammalian host cells by Yersinia sp Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query294
1euv_A221 X-Ray Structure Of The C-Terminal Ulp1 Protease Dom 9e-11
2ckg_A225 The Structure Of Senp1 Sumo-2 Co-Complex Suggests A 8e-10
2hkp_A221 Sumo Protease Ulp1 With The Catalytic Cysteine Oxid 1e-09
2xph_A238 Crystal Structure Of Human Senp1 With The Bound Cob 3e-09
2iyc_A226 Senp1 Native Structure Length = 226 4e-09
2xre_A230 Detection Of Cobalt In Previously Unassigned Human 4e-09
2iy0_A226 Senp1 (Mutant) Sumo1 Rangap Length = 226 3e-08
2g4d_A205 Crystal Structure Of Human Senp1 Mutant (C603s) In 2e-07
1tgz_A226 Structure Of Human Senp2 In Complex With Sumo-1 Len 8e-06
2io0_A232 Crystal Structure Of Human Senp2 In Complex With Pr 1e-04
>pdb|1EUV|A Chain A, X-Ray Structure Of The C-Terminal Ulp1 Protease Domain In Complex With Smt3, The Yeast Ortholog Of Sumo Length = 221 Back     alignment and structure 
Iteration: 1

 Score = 64.3 bits (155), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 81/176 (46%), Gaps = 31/176 (17%)
Query: 75  ITRSSMRTLLPGEWIDGDIITMYADYKNMKEAEKDVTSPRCWFLPTYYSQAALADWSSLN 134
           IT    +TL P  W++  II  +     MK  EK  ++P      +++       +++L+
Sbjct: 35  ITVRDFKTLAPRRWLNDTIIEFF-----MKYIEK--STPNTVAFNSFF-------YTNLS 80
Query: 135 FAQAAGFRDRYMSR----LDTCEKIYVPIN-SDGHWYMLVVDISHATATIWDSLESPSRR 189
                G R R+M R    +D  +KI+ PIN +  HW + ++D+   T    DSL +    
Sbjct: 81  ERGYQGVR-RWMKRKKTQIDKLDKIFTPINLNQSHWALGIIDLKKKTIGYVDSLSNGPNA 139
Query: 190 EKMINESLAILASLDFVLRQEARALFCNQFTFLNFQICRQAGLPQQPNGFDCGYYV 245
                 S AIL  L   + +E++      F  ++   C     PQQPNG+DCG YV
Sbjct: 140 M-----SFAILTDLQKYVMEESKHTIGEDFDLIHLD-C-----PQQPNGYDCGIYV 184
>pdb|2CKG|A Chain A, The Structure Of Senp1 Sumo-2 Co-Complex Suggests A Structural Basis For Discrimination Between Sumo Paralogues During Processing Length = 225 Back     alignment and structure
>pdb|2HKP|A Chain A, Sumo Protease Ulp1 With The Catalytic Cysteine Oxidized To A Sulfenic Acid Length = 221 Back     alignment and structure
>pdb|2XPH|A Chain A, Crystal Structure Of Human Senp1 With The Bound Cobalt Length = 238 Back     alignment and structure
>pdb|2IYC|A Chain A, Senp1 Native Structure Length = 226 Back     alignment and structure
>pdb|2XRE|A Chain A, Detection Of Cobalt In Previously Unassigned Human Senp1 Structure Length = 230 Back     alignment and structure
>pdb|2IY0|A Chain A, Senp1 (Mutant) Sumo1 Rangap Length = 226 Back     alignment and structure
>pdb|2G4D|A Chain A, Crystal Structure Of Human Senp1 Mutant (C603s) In Complex With Sumo-1 Length = 205 Back     alignment and structure
>pdb|1TGZ|A Chain A, Structure Of Human Senp2 In Complex With Sumo-1 Length = 226 Back     alignment and structure
>pdb|2IO0|A Chain A, Crystal Structure Of Human Senp2 In Complex With Presumo-2 Length = 232 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query294
2xph_A238 Sentrin-specific protease 1; hydrolase, cysteine p 3e-24
1euv_A221 ULP1 protease; SUMO hydrolase, ubiquitin-like prot 2e-21
1th0_A226 SMT3-, sentrin-specific protease 2; SUMO, AXAM, SE 3e-20
2oix_A186 Xanthomonas outer protein D; CLAN CE family 48 cys 3e-15
2bkr_A212 Sentrin-specific protease 8; protein-binding-hydro 4e-14
3eay_A323 Sentrin-specific protease 7; ULP, SENP, SUMO, ubiq 1e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-04
>2xph_A Sentrin-specific protease 1; hydrolase, cysteine protease, thiol protease; 2.40A {Homo sapiens} PDB: 2xre_A 2iyc_A 2iyd_A 2iy1_A 2iy0_A 2ckg_A 2ckh_A 2g4d_A Length = 238 Back     alignment and structure
 Score = 97.5 bits (242), Expect = 3e-24
 Identities = 52/241 (21%), Positives = 100/241 (41%), Gaps = 23/241 (9%)

Query: 44  PISEDAKQLILYLFDDKLNTMEIVVDIGDNSITRSSMRTLLPGEWIDGDIITMYADYKNM 103
            I+E+ ++ I  +F +  N  E++ +    +ITR  ++TL    W++ +II  Y +   +
Sbjct: 16  EITEEMEKEIKNVFRNG-NQDEVLSEAFRLTITRKDIQTLNHLNWLNDEIINFYMNM--L 72

Query: 104 KEAEKDVTSPRCWFLPTY-YSQAALADWSSLNFAQAAGFRDRYMSRLDTCEKIYVPINSD 162
            E  K+   P      T+ +++   A + ++        R      + + + + VPI+  
Sbjct: 73  MERSKEKGLPSVHAFNTFFFTKLKTAGYQAVK-------RWTKKVDVFSVDILLVPIHLG 125

Query: 163 GHWYMLVVDISHATATIWDSLESPSRREKMINESLAILASLDFVLRQEARALFCNQFTFL 222
            HW + VVD      T +DS+   +     I             L+QE+      +F   
Sbjct: 126 VHWCLAVVDFRKKNITYYDSMGGINNEACRILLQY---------LKQESIDKKRKEFDTN 176

Query: 223 NFQIC--RQAGLPQQPNGFDCGYYVMKYMDSPCIVVHDSY-QHDSDHARLLLALYLVQSP 279
            +Q+   +   +PQQ NG DCG +  KY D        ++ Q    + R  +   ++   
Sbjct: 177 GWQLFSKKSQEIPQQMNGSDCGMFACKYADCITKDRPINFTQQHMPYFRKRMVWEILHRK 236

Query: 280 L 280
           L
Sbjct: 237 L 237
>1euv_A ULP1 protease; SUMO hydrolase, ubiquitin-like protease 1, SMT3 hydrolase desumoylating enzyme, cysteine protease; 1.60A {Saccharomyces cerevisiae} SCOP: d.3.1.7 PDB: 2hkp_A 2hl8_A 2hl9_A Length = 221 Back     alignment and structure
>1th0_A SMT3-, sentrin-specific protease 2; SUMO, AXAM, SENP, ULP, cell cycle, hydrolase; 2.20A {Homo sapiens} SCOP: d.3.1.7 PDB: 1tgz_A 2io0_A 2io1_A 2io2_A 2io3_A Length = 226 Back     alignment and structure
>2oix_A Xanthomonas outer protein D; CLAN CE family 48 cysteine protease, type III secreted effec desumoylating enzyme; 1.80A {Xanthomonas euvesicatoria} PDB: 2oiv_A Length = 186 Back     alignment and structure
>2bkr_A Sentrin-specific protease 8; protein-binding-hydrolase complex, ubiquitin, hydrolase, Pro thiol protease, UBL conjugation pathway, ubiquitin/hydrolas complex; 1.90A {Homo sapiens} SCOP: d.3.1.7 PDB: 2bkq_A 1xt9_A Length = 212 Back     alignment and structure
>3eay_A Sentrin-specific protease 7; ULP, SENP, SUMO, ubiquitin, crystal, alternative splicing, hydrolase, phosphoprotein, polymorphism, thiol protease; 2.40A {Homo sapiens} Length = 323 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query294
1th0_A226 SMT3-, sentrin-specific protease 2; SUMO, AXAM, SE 100.0
2xph_A238 Sentrin-specific protease 1; hydrolase, cysteine p 100.0
1euv_A221 ULP1 protease; SUMO hydrolase, ubiquitin-like prot 100.0
3eay_A323 Sentrin-specific protease 7; ULP, SENP, SUMO, ubiq 100.0
2bkr_A212 Sentrin-specific protease 8; protein-binding-hydro 100.0
2oix_A186 Xanthomonas outer protein D; CLAN CE family 48 cys 100.0
4ekf_A204 Adenain; alpha and beta protein (A+B), hydrolase; 97.13
>1th0_A SMT3-, sentrin-specific protease 2; SUMO, AXAM, SENP, ULP, cell cycle, hydrolase; 2.20A {Homo sapiens} SCOP: d.3.1.7 PDB: 1tgz_A 2io0_A 2io1_A 2io2_A 2io3_A Back     alignment and structure
Probab=100.00  E-value=3.5e-51  Score=355.49  Aligned_cols=221  Identities=22%  Similarity=0.328  Sum_probs=197.7

Q ss_pred             CCCCCHHHHHHHHHHhccCCCCcceeeecCCeEEehhhhcccCCCCcccHHHHHHHHHHHhhhhhhhccCCCceEEccch
Q 022637           42 PSPISEDAKQLILYLFDDKLNTMEIVVDIGDNSITRSSMRTLLPGEWIDGDIITMYADYKNMKEAEKDVTSPRCWFLPTY  121 (294)
Q Consensus        42 ~~~ls~~~~~~~~~~l~~~~~~~~~l~~~~~~~l~~~dl~~L~~~~wLnD~vI~~~~~~ll~~~~~~~~~~~~~~~~~t~  121 (294)
                      .+|||+++.+++..++.++ ++++++++++++.|+++|+.+|.+++||||+||+||+++ |.++.... ..+++++|+|+
T Consensus         2 ~~~lt~~~~~~~~~~l~~~-~~~~~~~~~~~~~l~~~Dl~~L~~~~wLND~iI~fy~~~-L~~~~~~~-~~~~~~~f~s~   78 (226)
T 1th0_A            2 LLELTEDMEKEISNALGHG-PQDEILSSAFKLRITRGDIQTLKNYHWLNDEVINFYMNL-LVERNKKQ-GYPALHVFSTF   78 (226)
T ss_dssp             CCCCCHHHHHHHHHHHSSS-CTTCEEEEETTEEEEHHHHGGGSTTCCCCHHHHHHHHHH-HHHHHHHH-TCCCEEECCTT
T ss_pred             CCCCCHHHHHHHHHHhccC-CccceeeccCCeEEEHHHHhhcCCCCccChHHHHHHHHH-HHHhhhhc-cCCcEEEEeHH
Confidence            3699999999999999875 789999999999999999999999999999999999999 77665432 46899999999


Q ss_pred             HHHHhhccccccchhhhhhhhhhcccCCCCCCeeEeeecCCCceeEEEEeecCceEEEecCCCCCCchhhhhHHHHHHHH
Q 022637          122 YSQAALADWSSLNFAQAAGFRDRYMSRLDTCEKIYVPINSDGHWYMLVVDISHATATIWDSLESPSRREKMINESLAILA  201 (294)
Q Consensus       122 f~~~l~~~~~~~~~~~v~r~~~~~~~~l~~~d~IfiPIn~~~HW~L~vv~~~~~~i~~~DSl~~~~~~~~~l~~~~~i~~  201 (294)
                      |+++|..    .+|+++++|++  +.+++++++||||||.++||+|+|||+++++|+|||||++.+...         .+
T Consensus        79 f~~~l~~----~~~~~v~~w~~--~~~l~~~~~i~iPin~~~HW~l~vi~~~~~~i~~~DSl~~~~~~~---------~~  143 (226)
T 1th0_A           79 FYPKLKS----GGYQAVKRWTK--GVNLFEQEIILVPIHRKVHWSLVVIDLRKKCLKYLDSMGQKGHRI---------CE  143 (226)
T ss_dssp             HHHHHHH----HTGGGTGGGGT--TCCGGGSSEEEEEEEETTEEEEEEEETTTTEEEEECTTCCCCHHH---------HH
T ss_pred             HHHHhhh----cccHHHHHHhh--cCCcccCCEEEEeEEeCcEEEEEEEEcCCCceEEEcCCCCCchHH---------HH
Confidence            9999987    57899999999  899999999999999999999999999999999999999987543         67


Q ss_pred             HHHHHHHHHHHHhhCCCCCCCcceec--cCCccCCCCCCCCcHHHHHHhhHhhccccCCCC-CCCcHHHHHHHHHHHHcC
Q 022637          202 SLDFVLRQEARALFCNQFTFLNFQIC--RQAGLPQQPNGFDCGYYVMKYMDSPCIVVHDSY-QHDSDHARLLLALYLVQS  278 (294)
Q Consensus       202 ~l~~~l~~e~~~k~~~~~~~~~w~~~--~~~~~PqQ~Ng~DCGvfvl~~~e~~~~~~~~~~-~~d~~~~R~~l~~~l~~~  278 (294)
                      .|..|+..++.++.+..++.++|++.  ...++|||.||+|||||||+||++++.+.+..| +.+++.+|++|+.+|+++
T Consensus       144 ~l~~~l~~e~~~k~~~~~~~~~w~~~~~~~~~~PqQ~Ng~DCGvfvl~~~~~~~~~~~~~f~q~dm~~~R~~~~~ei~~~  223 (226)
T 1th0_A          144 ILLQYLQDESKTKRNSDLNLLEWTHHSMKPHEIPQQLNGSDCGMFTCKYADYISRDKPITFTQHQMPLFRKKMVWEILHQ  223 (226)
T ss_dssp             HHHHHHHHHHHHHTSCCCCGGGCEEEECCTTTSCCCCSSSCHHHHHHHHHHHHTTTCCCCCCGGGHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhcCCCCCcccceeccccCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCccChhhHHHHHHHHHHHHHhC
Confidence            78899999998888888888899874  257899999999999999999999987766666 467899999999999988


Q ss_pred             Cc
Q 022637          279 PL  280 (294)
Q Consensus       279 ~~  280 (294)
                      .+
T Consensus       224 ~l  225 (226)
T 1th0_A          224 QL  225 (226)
T ss_dssp             CC
T ss_pred             Cc
Confidence            64
>2xph_A Sentrin-specific protease 1; hydrolase, cysteine protease, thiol protease; 2.40A {Homo sapiens} PDB: 2xre_A 2iyc_A 2iyd_A 2iy1_A 2iy0_A 2ckg_A 2ckh_A 2g4d_A Back     alignment and structure
>1euv_A ULP1 protease; SUMO hydrolase, ubiquitin-like protease 1, SMT3 hydrolase desumoylating enzyme, cysteine protease; 1.60A {Saccharomyces cerevisiae} SCOP: d.3.1.7 PDB: 2hkp_A 2hl8_A 2hl9_A Back     alignment and structure
>3eay_A Sentrin-specific protease 7; ULP, SENP, SUMO, ubiquitin, crystal, alternative splicing, hydrolase, phosphoprotein, polymorphism, thiol protease; 2.40A {Homo sapiens} Back     alignment and structure
>2bkr_A Sentrin-specific protease 8; protein-binding-hydrolase complex, ubiquitin, hydrolase, Pro thiol protease, UBL conjugation pathway, ubiquitin/hydrolas complex; 1.90A {Homo sapiens} SCOP: d.3.1.7 PDB: 2bkq_A 1xt9_A Back     alignment and structure
>2oix_A Xanthomonas outer protein D; CLAN CE family 48 cysteine protease, type III secreted effec desumoylating enzyme; 1.80A {Xanthomonas euvesicatoria} PDB: 2oiv_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 294
d2iy1a1225 d.3.1.7 (A:419-643) Sentrin-specific protease 1 {H 1e-22
d1th0a_226 d.3.1.7 (A:) Sentrin-specific protease 2, SENP2 {H 1e-21
d1euva_221 d.3.1.7 (A:) Ulp1 protease C-terminal domain {Bake 1e-20
d2bkra1212 d.3.1.7 (A:1-212) Sentrin-specific protease 8, SEN 1e-13
>d2iy1a1 d.3.1.7 (A:419-643) Sentrin-specific protease 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 225 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.4 bits (226), Expect = 1e-22
 Identities = 48/240 (20%), Positives = 93/240 (38%), Gaps = 21/240 (8%)

Query: 44  PISEDAKQLILYLFDDKLNTMEIVVDIGDNSITRSSMRTLLPGEWIDGDIITMYADYKNM 103
            I+E+ ++ I  +F +     E++ +    +ITR  ++TL    W++ +II  Y     +
Sbjct: 4   EITEEMEKEIKNVFRNGNQD-EVLSEAFRLTITRKDIQTLNHLNWLNDEIINFY--MNML 60

Query: 104 KEAEKDVTSPRCWFLPTYYSQAALADWSSLNFAQAAGFRDRYMSRLDTCEKIYVPINSDG 163
            E  K+   P      T++         +  +     +  +    + + + + VPI+   
Sbjct: 61  MERSKEKGLPSVHAFNTFFFT----KLKTAGYQAVKRWTKKV--DVFSVDILLVPIHLGV 114

Query: 164 HWYMLVVDISHATATIWDSLESPSRREKMINESLAILASLDFVLRQEARALFCNQFTFLN 223
           HW + VVD      T +DS+   +     I             L+QE+      +F    
Sbjct: 115 HWCLAVVDFRKKNITYYDSMGGINNEACRILLQY---------LKQESIDKKRKEFDTNG 165

Query: 224 FQICR--QAGLPQQPNGFDCGYYVMKYMDSPCIVVHDSY-QHDSDHARLLLALYLVQSPL 280
           +Q+       +PQQ NG D G +  KY D        ++ Q    + R  +   ++   L
Sbjct: 166 WQLFSKKSQEIPQQMNGSDAGMFACKYADCITKDRPINFTQQHMPYFRKRMVWEILHRKL 225
>d1th0a_ d.3.1.7 (A:) Sentrin-specific protease 2, SENP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 226 Back     information, alignment and structure
>d1euva_ d.3.1.7 (A:) Ulp1 protease C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 221 Back     information, alignment and structure
>d2bkra1 d.3.1.7 (A:1-212) Sentrin-specific protease 8, SENP8 {Human (Homo sapiens) [TaxId: 9606]} Length = 212 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query294
d2iy1a1225 Sentrin-specific protease 1 {Human (Homo sapiens) 100.0
d1euva_221 Ulp1 protease C-terminal domain {Baker's yeast (Sa 100.0
d1th0a_226 Sentrin-specific protease 2, SENP2 {Human (Homo sa 100.0
d2bkra1212 Sentrin-specific protease 8, SENP8 {Human (Homo sa 100.0
d1nlna_203 Human adenovirus 2 proteinase, adenain {Mastadenov 96.66
>d2iy1a1 d.3.1.7 (A:419-643) Sentrin-specific protease 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-45  Score=317.41  Aligned_cols=221  Identities=22%  Similarity=0.326  Sum_probs=193.2

Q ss_pred             CCCCCHHHHHHHHHHhccCCCCcceeeecCCeEEehhhhcccCCCCcccHHHHHHHHHHHhhhhhhhccCCCceEEccch
Q 022637           42 PSPISEDAKQLILYLFDDKLNTMEIVVDIGDNSITRSSMRTLLPGEWIDGDIITMYADYKNMKEAEKDVTSPRCWFLPTY  121 (294)
Q Consensus        42 ~~~ls~~~~~~~~~~l~~~~~~~~~l~~~~~~~l~~~dl~~L~~~~wLnD~vI~~~~~~ll~~~~~~~~~~~~~~~~~t~  121 (294)
                      ++|||+++++++..++..+ ++++++++++++.||++|+.+|.+++||||.||++|+++ +.++... ...+++++++|+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~it~~Dl~~L~~~~wLnd~iI~~y~~~-l~~~~~~-~~~~~~~~~~t~   78 (225)
T d2iy1a1           2 FPEITEEMEKEIKNVFRNG-NQDEVLSEAFRLTITRKDIQTLNHLNWLNDEIINFYMNM-LMERSKE-KGLPSVHAFNTF   78 (225)
T ss_dssp             CCCCCHHHHHHHHHHSSSS-CTTCEEEEETTEEEEHHHHHTTSTTCCCBHHHHHHHHHH-HHHHTTS-TTSCCEEECCTT
T ss_pred             CCCCCHHHHHHHHHHhcCC-CcCceeeecCCceeeHHHHHHhcCCcchhhHHHHHHHHH-HHHHhhh-hccCceEEeccH
Confidence            4899999999999999775 789999999999999999999999999999999999999 7765443 357899999999


Q ss_pred             HHHHhhccccccchhhhhhhhhhcccCCCCCCeeEeeecCCCceeEEEEeecCceEEEecCCCCCCchhhhhHHHHHHHH
Q 022637          122 YSQAALADWSSLNFAQAAGFRDRYMSRLDTCEKIYVPINSDGHWYMLVVDISHATATIWDSLESPSRREKMINESLAILA  201 (294)
Q Consensus       122 f~~~l~~~~~~~~~~~v~r~~~~~~~~l~~~d~IfiPIn~~~HW~L~vv~~~~~~i~~~DSl~~~~~~~~~l~~~~~i~~  201 (294)
                      |+..+..    .++..+++|++  +.+++++++||||||.++||+|++|+++.+++.+||||++.+...         ..
T Consensus        79 ~~~~~~~----~~~~~~~~~~~--~~~~~~~~~I~iPin~~~HW~l~vi~~~~~~i~~~DSl~~~~~~~---------~~  143 (225)
T d2iy1a1          79 FFTKLKT----AGYQAVKRWTK--KVDVFSVDILLVPIHLGVHWCLAVVDFRKKNITYYDSMGGINNEA---------CR  143 (225)
T ss_dssp             HHHHHHH----SCGGGTGGGGT--TCCGGGSSEEEEEEECSSCEEEEEEETTTTEEEEECTTCCCCHHH---------HH
T ss_pred             HHhhhcc----cCHHHHHHHHh--ccccccCCEEEEEEeCCCCEEEEEEEeccceEEEEecCCCCchHH---------HH
Confidence            9998877    67889999999  889999999999999999999999999999999999999987765         45


Q ss_pred             HHHHHHHHHHHHhhCCCCCCCcceec--cCCccCCCCCCCCcHHHHHHhhHhhccccCCCC-CCCcHHHHHHHHHHHHcC
Q 022637          202 SLDFVLRQEARALFCNQFTFLNFQIC--RQAGLPQQPNGFDCGYYVMKYMDSPCIVVHDSY-QHDSDHARLLLALYLVQS  278 (294)
Q Consensus       202 ~l~~~l~~e~~~k~~~~~~~~~w~~~--~~~~~PqQ~Ng~DCGvfvl~~~e~~~~~~~~~~-~~d~~~~R~~l~~~l~~~  278 (294)
                      .+..++..++..+....++...|...  ...++|||.||+|||+|||+||++++.+.+..+ +.+++.+|++|+.+|+.+
T Consensus       144 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~pqQ~Ng~DCGvfvl~~~~~~~~~~~~~~~q~~~~~~R~~~~~~l~~~  223 (225)
T d2iy1a1         144 ILLQYLKQESIDKKRKEFDTNGWQLFSKKSQEIPQQMNGSDAGMFACKYADCITKDRPINFTQQHMPYFRKRMVWEILHR  223 (225)
T ss_dssp             HHHHHHHHHHHHHHSSCCCCTTCEEEECCTTTSCCCCSSSTHHHHHHHHHHHHHTTCCCCCCGGGHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhccCccCcccceecccccccCCCCCCCCChHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHHHHhC
Confidence            56667777777777777777788753  457899999999999999999999987655555 356899999999999987


Q ss_pred             Cc
Q 022637          279 PL  280 (294)
Q Consensus       279 ~~  280 (294)
                      .+
T Consensus       224 ~l  225 (225)
T d2iy1a1         224 KL  225 (225)
T ss_dssp             CC
T ss_pred             cC
Confidence            64
>d1euva_ d.3.1.7 (A:) Ulp1 protease C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1th0a_ d.3.1.7 (A:) Sentrin-specific protease 2, SENP2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bkra1 d.3.1.7 (A:1-212) Sentrin-specific protease 8, SENP8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nlna_ d.3.1.7 (A:) Human adenovirus 2 proteinase, adenain {Mastadenovirus H2 [TaxId: 10515]} Back     information, alignment and structure