Citrus Sinensis ID: 022643

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290----
Protein Sequence
MHEFLFFVFMYQIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMFIWKLYYAEYLLIPFVR
Secondary Structure (PSIPRED)
cccEEEEcHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHcccccccHHHcHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccHEEEEEHHHHHHHHHHHHHHHHHcHccccHHHHHHHHHHHHHHHHHHHEEEEHcccccHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHEEccccccHHcHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHccccccccHHccccEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MHEFLFFVFMYQIIATtsnsllpvqtladltpAYFTGLMEALVPAVLMHIYVVAINQlsdvevdkvnkpylplasgeismGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAysvqlpllrwkgnSFLAAFCMVSLNGLLTQFPVYVHIQKYvlgrpleiftrplMFATAFISCFCVVIAFIKdlhdvdgdkkfGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMFIWKLYYAEYLLIPFVR
Flexible Loop (DISEMBL)
MHEFLFFVFMYQIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINqlsdvevdKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMFIWKLYYAEYLLIPFVR
Low Complexity Region (SEG)
MHEFLFFVFMYQIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYgaavvvgassPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMFIWKLYYAEYLLIPFVR
Disordered region (IsUnstruct)
***FLFFVFMYQIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMFIWKLYYAEYLLIPFV*
Disordered Region (DISOPRED)
MHEFLFFVFMYQIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMFIWKLYYAEYLLIPFVR
Disordered Region (DISEMBL)
MHEFLFFVFMYQIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMFIWKLYYAEYLLIPFVR
Disordered Region (DISPRO)
MHEFLFFVFMYQIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMFIWKLYYAEYLLIPFVR
Transmembrane Helix (TMHMM)
oooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSoooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MHEFLFFVFMYQIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMFIWKLYYAEYLLIPFVR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	294	2.2.26 [Sep-21-2011]
Q8VWJ1	393	Homogentisate phytyltrans	yes	no	0.955	0.715	0.521	2e-83
B7FA90	404	Probable homogentisate ph	no	no	0.952	0.693	0.501	9e-77
B1B3P3	410	Naringenin 8-dimethylally	N/A	no	0.955	0.685	0.443	9e-68
B9A1Q4	409	Glycinol 4-dimethylallylt	no	no	0.986	0.709	0.403	2e-59
Q1ACB3	386	Homogentisate phytyltrans	no	no	0.850	0.647	0.356	9e-32
Q0D576	379	Probable homogentisate ph	no	no	0.829	0.643	0.353	2e-28
Q4J8K2	275	Digeranylgeranylglyceryl	yes	no	0.636	0.68	0.290	2e-08
C5A1J7	276	Digeranylgeranylglyceryl	yes	no	0.479	0.510	0.302	2e-08
B6YW76	276	Digeranylgeranylglyceryl	yes	no	0.465	0.496	0.337	6e-08
B1L6Z7	281	Digeranylgeranylglyceryl	yes	no	0.517	0.540	0.290	3e-07

>sp|Q8VWJ1|HPT1_ARATH Homogentisate phytyltransferase 1, chloroplastic OS=Arabidopsis thaliana GN=VTE2-1 PE=2 SV=1

 Score =  308 bits (790), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 147/282 (52%), Positives = 213/282 (75%), Gaps = 1/282 (0%)

Query: 13  IIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLP 72
           +++  S S L V+ ++D++P  FTG++EA+V A++M+IY+V +NQLSDVE+DKVNKPYLP
Sbjct: 113 VLSILSVSFLAVEKVSDISPLLFTGILEAVVAALMMNIYIVGLNQLSDVEIDKVNKPYLP 172

Query: 73  LASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGN 132
           LASGE S+ TGIAI  + ++MS     ++ S P  WA+     +GTAYS+ LPLLRWK  
Sbjct: 173 LASGEYSVNTGIAIVASFSIMSFWLGWIVGSWPLFWALFVSFMLGTAYSINLPLLRWKRF 232

Query: 133 SFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDL 192
           + +AA C++++  ++ Q   Y+HIQ +V GRP+ +FTRPL+FATAF+S F VVIA  KD+
Sbjct: 233 ALVAAMCILAVRAIIVQIAFYLHIQTHVFGRPI-LFTRPLIFATAFMSFFSVVIALFKDI 291

Query: 193 HDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGI 252
            D++GDK FGI++ SV LG++RVF   V++L +AY  A++VGA+SPF+ +K+I+++GH I
Sbjct: 292 PDIEGDKIFGIRSFSVTLGQKRVFWTCVTLLQMAYAVAILVGATSPFIWSKVISVVGHVI 351

Query: 253 LASIFWLRVRAVDLSDNASILSFYMFIWKLYYAEYLLIPFVR 294
           LA+  W R ++VDLS    I S YMFIWKL+YAEYLL+PF++
Sbjct: 352 LATTLWARAKSVDLSSKTEITSCYMFIWKLFYAEYLLLPFLK 393

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone. Tocopherol functions to limit lipid oxidation during seed desiccation, quiescence and germination and early seedling development. Protects thylakoid membrane lipids from photooxidation and is required for low-temperature adaptation.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: nEC: 8

>sp|B7FA90|HPT1_ORYSJ Probable homogentisate phytyltransferase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=HPT1 PE=2 SV=1

 Score =  286 bits (733), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 141/281 (50%), Positives = 202/281 (71%), Gaps = 1/281 (0%)

Query: 14  IATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPL 73
           ++  S SLL V+ L+D++P + TGL+EA+V A+ M+IY+V +NQL D+E+DKVNKP LPL
Sbjct: 125 LSIVSVSLLAVENLSDVSPLFLTGLLEAVVAALFMNIYIVGLNQLFDIEIDKVNKPTLPL 184

Query: 74  ASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNS 133
           ASGE S  TG+A+  A A MS      + S P   A+     +GTAYS+ LP LRWK ++
Sbjct: 185 ASGEYSPATGVALVSAFAAMSFGLGWAVGSQPLFLALFISFILGTAYSINLPFLRWKRSA 244

Query: 134 FLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLH 193
            +AA C++++  ++ Q   ++HIQ +V  RP  +FTRPL+FATAF++ F VVIA  KD+ 
Sbjct: 245 VVAALCILAVRAVIVQLAFFLHIQTFVFRRP-AVFTRPLIFATAFMTFFSVVIALFKDIP 303

Query: 194 DVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGIL 253
           D++GD+ FGIK+ SV LG+++VF + V +L +AY  A+++GA+S  L +K  T++GH IL
Sbjct: 304 DIEGDRIFGIKSFSVRLGQKKVFWICVGLLEMAYCVAILMGATSACLWSKYATVVGHAIL 363

Query: 254 ASIFWLRVRAVDLSDNASILSFYMFIWKLYYAEYLLIPFVR 294
           A+I W R R++DL+   +I SFYMFIWKL+YAEYLLIP VR
Sbjct: 364 AAILWNRSRSIDLTSKTAITSFYMFIWKLFYAEYLLIPLVR 404

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydroquinone.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|B1B3P3|N8DT1_SOPFL Naringenin 8-dimethylallyltransferase 1, chloroplastic OS=Sophora flavescens GN=N8DT-1 PE=1 SV=1

 Score =  256 bits (655), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 125/282 (44%), Positives = 188/282 (66%), Gaps = 1/282 (0%)

Query: 13  IIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLP 72
           ++  T  SL+ V+ L+DL+ A+F G ++ +V  + +HI+ V +NQL D+E+DK+NKP LP
Sbjct: 130 VLGATFKSLVAVEKLSDLSLAFFIGWLQVVVAVICIHIFGVGLNQLCDIEIDKINKPDLP 189

Query: 73  LASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGN 132
           LASG++S    + IT +S ++ L +A ++ S P  W V     V +AY+V LPLLRWK  
Sbjct: 190 LASGKLSFRNVVIITASSLILGLGFAWIVDSWPLFWTVFISCMVASAYNVDLPLLRWKKY 249

Query: 133 SFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDL 192
             L A   ++   +      ++H+Q  V  RP   F RPL+F TA +S + +VIA  KD+
Sbjct: 250 PVLTAINFIADVAVTRSLGFFLHMQTCVFKRP-TTFPRPLIFCTAIVSIYAIVIALFKDI 308

Query: 193 HDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGI 252
            D++GD+KFGI++LS+ LG +RVF + VS+L + YG  ++VGA+SP L +K+IT++GH +
Sbjct: 309 PDMEGDEKFGIQSLSLRLGPKRVFWICVSLLEMTYGVTILVGATSPILWSKIITVLGHAV 368

Query: 253 LASIFWLRVRAVDLSDNASILSFYMFIWKLYYAEYLLIPFVR 294
           LAS+ W   ++VDL+ N  + SFYMFIWKL+ AEY LIP  R
Sbjct: 369 LASVLWYHAKSVDLTSNVVLHSFYMFIWKLHTAEYFLIPLFR 410

Involved in the biosynthesis of sophoraflavanone G (SFG). Can use flavanones (naringenin, liquiritigenin and hesperetin) as substrates, but not flavonols or isoflavones. Shows a strict specificity for dimethylallyl diphosphate.

Sophora flavescens (taxid: 49840)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 7

EC: 0

>sp|B9A1Q4|G4DT_SOYBN Glycinol 4-dimethylallyltransferase OS=Glycine max GN=G4DT PE=1 SV=1

 Score =  229 bits (584), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 119/295 (40%), Positives = 185/295 (62%), Gaps = 5/295 (1%)

Query: 4   FLFFVFMYQIIATT----SNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLS 59
           F +F + Y +I  T    S+SLL V+ L+D++ ++  G+++ ++P + + IY+  +NQL 
Sbjct: 116 FYWFSYPYTMIGITLCAFSSSLLAVEKLSDISLSFLIGVLQGVLPQLFIEIYLCGVNQLY 175

Query: 60  DVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTA 119
           D+E+DK+NKP+LP+ASG+ S  TG+ I+ A   +S  +  +  S P I  ++      TA
Sbjct: 176 DLEIDKINKPHLPMASGQFSFKTGVIISAAFLALSFGFTWITGSWPLICNLVVIASSWTA 235

Query: 120 YSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFI 179
           YS+ +PLLRWK   F+AA CM+S   L      + H+Q  VL RP+  F R L F  AF+
Sbjct: 236 YSIDVPLLRWKRYPFVAAMCMISTWALALPISYFHHMQTVVLKRPIG-FPRSLGFLVAFM 294

Query: 180 SCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPF 239
           + + + +A  KD+ DV+GDK+ GI + +V LG++R F + VS   +A+G  ++ GAS   
Sbjct: 295 TFYSLGLALSKDIPDVEGDKEHGIDSFAVRLGQKRAFWICVSFFEMAFGVGILAGASCSH 354

Query: 240 LANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMFIWKLYYAEYLLIPFVR 294
              K+ T +G+ +LASI W + ++VDLSD AS  SFYMFIWKL YA + L+  +R
Sbjct: 355 FWTKIFTGMGNAVLASILWYQAKSVDLSDKASTGSFYMFIWKLLYAGFFLMALIR 409

Proposed to be involved in the biosynthesis of pterocarpan phytoalexins, specifically glyceollins. Can act as a prenyltransferase towards glycinol which is the direct precursor of glyceollins. Seems to be specific for prenylation at C-4 thus producing glyceollin I.

Glycine max (taxid: 3847)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: 6

>sp|Q1ACB3|HPT2_ARATH Homogentisate phytyltransferase 2, chloroplastic OS=Arabidopsis thaliana GN=HPT2 PE=2 SV=1

 Score =  137 bits (345), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 92/258 (35%), Positives = 146/258 (56%), Gaps = 8/258 (3%)

Query: 39  MEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYA 98
           +  L+  +  + Y+V INQ+ D+ +DKVNKPYLP+A+G++S+ +   + +  A+  L   
Sbjct: 134 LSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWLLVIFFAIAGL-LV 192

Query: 99  VMIRSPPFIWAVIA-WIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQ 157
           V     PFI ++ +  +F+GT YSV  P LR K     A   + ++ G L  F VY H  
Sbjct: 193 VGFNFGPFITSLYSLGLFLGTIYSV--PPLRMKRFPVAAFLIIATVRGFLLNFGVY-HAT 249

Query: 158 KYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFR 217
           +  LG P + ++ P+ F T+F++ F +VIA  KDL DV+GD+KF I TL+  LG   +  
Sbjct: 250 RAALGLPFQ-WSAPVAFITSFVTLFALVIAITKDLPDVEGDRKFQISTLATKLGVRNIAF 308

Query: 218 LSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSD--NASILSF 275
           L   +L + Y +A+ +    P +    + I  H ILAS    +   ++ ++    +I  +
Sbjct: 309 LGSGLLLVNYVSAISLAFYMPQVFRGSLMIPAHVILASGLIFQTWVLEKANYTKEAISGY 368

Query: 276 YMFIWKLYYAEYLLIPFV 293
           Y FIW L+YAEYLL PF+
Sbjct: 369 YRFIWNLFYAEYLLFPFL 386

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|Q0D576|HPT2_ORYSJ Probable homogentisate phytyltransferase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=HPT2 PE=3 SV=2

 Score =  126 bits (316), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 92/260 (35%), Positives = 141/260 (54%), Gaps = 16/260 (6%)

Query: 41  ALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTG--IAITLASALMSLAYA 98
            LV  +  + Y+V INQ+ D+ +DKVNKPYLP+A+G++S+ T   + +  A+A  S+   
Sbjct: 129 GLVALICGNGYIVGINQIYDIRIDKVNKPYLPIAAGDLSVQTAWLLVVLFAAAGFSI--- 185

Query: 99  VMIRSPPFIWAVIA-WIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQ 157
           V+    PFI ++    +F+GT YSV  P  R K     A   + ++ G L  F VY +  
Sbjct: 186 VVTNFGPFITSLYCLGLFLGTIYSV--PPFRLKRYPVAAFLIIATVRGFLLNFGVY-YAT 242

Query: 158 KYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFR 217
           +  LG   + ++ P+ F T F++ F +VIA  KDL DV+GD+K+ I TL+  LG   +  
Sbjct: 243 RAALGLTFQ-WSSPVAFITCFVTLFALVIAITKDLPDVEGDRKYQISTLATKLGVRNIAF 301

Query: 218 LSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILAS--IF--WLRVRAVDLSDNASIL 273
           L   +L   Y AA+ V    P    + + +  H  LA   IF  W+  +A    D  +I 
Sbjct: 302 LGSGLLIANYVAAIAVAFLMPQAFRRTVMVPVHAALAVGIIFQTWVLEQAKYTKD--AIS 359

Query: 274 SFYMFIWKLYYAEYLLIPFV 293
            +Y FIW L+YAEY+  P +
Sbjct: 360 QYYRFIWNLFYAEYIFFPLI 379

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|Q4J8K2|DGGGP_SULAC Digeranylgeranylglyceryl phosphate synthase OS=Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770) GN=Saci_1565 PE=3 SV=1

 Score = 60.1 bits (144), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 104/217 (47%), Gaps = 30/217 (13%)

Query: 9   FMYQIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK 68
           FM  +IATT             TP +F  L+  +V  +    YV  IN + D+EVDK+NK
Sbjct: 23  FMGYVIATT----------WKFTPLFFLPLL--VVSLIAAGGYV--INDVYDIEVDKINK 68

Query: 69  PYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLR 128
           P  PL SG I++      ++    + L  ++ +   PF +A+I  + +   Y+  L  L 
Sbjct: 69  PERPLPSGRIAVNIARRFSIVLFAVGLIISIPLGLIPFGFALITIVLL-YEYARSLKKLG 127

Query: 129 WKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAF 188
             GN       +V+L   L+ +  Y  +     G  L  F  P    T +I  F +   F
Sbjct: 128 LVGN------FIVALTSALSAY--YGGLAS---GSLLGNFIIP----TIYIFFFTLSREF 172

Query: 189 IKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSI 225
           +K + D++GDK+ G+ TL+V LG++  + ++  +L I
Sbjct: 173 VKGIEDIEGDKRNGVNTLAVKLGEKSTWIIAKIILGI 209

Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.

Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770) (taxid: 330779)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 2

>sp|C5A1J7|DGGGP_THEGJ Digeranylgeranylglyceryl phosphate synthase OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=TGAM_1764 PE=3 SV=1

 Score = 60.1 bits (144), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 81/162 (50%), Gaps = 21/162 (12%)

Query: 55  INQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWI 114
           IN   D E+D++N+P  PL  G +   T +  +L    + LA A++I    F +A++A+I
Sbjct: 56  INDYFDYEIDRINRPERPLPRGAMDRRTALWYSLFLFAVGLALALLISLKAFAFALLAYI 115

Query: 115 FVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMF 174
            +   Y+ +L  L + GN  +AA   V+        P+Y  I    +G          + 
Sbjct: 116 TM-FLYAWKLKPLPFIGNIAVAALTGVT--------PLYGAIAVGKIG----------LA 156

Query: 175 ATAFISCFCVVIA--FIKDLHDVDGDKKFGIKTLSVMLGKER 214
            T  +  F V +A   +KD+ DV+GD K G KTL ++LG+ +
Sbjct: 157 GTLAVCAFLVNVAREIVKDIEDVEGDLKKGAKTLPIILGRRK 198

Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.

Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) (taxid: 593117)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 2

>sp|B6YW76|DGGGP_THEON Digeranylgeranylglyceryl phosphate synthase OS=Thermococcus onnurineus (strain NA1) GN=TON_1950 PE=3 SV=1

 Score = 58.2 bits (139), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 56/166 (33%), Positives = 80/166 (48%), Gaps = 29/166 (17%)

Query: 55  INQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASAL--MSLAYAVMIRSPPFIWAVIA 112
           IN   D E+DK+N+P  PL  G  +MG  +A+  +  L  + LA A MI    FI  VIA
Sbjct: 56  INDYFDYEIDKINRPERPLPRG--AMGRKVALYYSMLLFAVGLALAYMINIYAFILGVIA 113

Query: 113 WI--FVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTR 170
           ++  F+   Y+ +L  L + GN  +A        GL    P+Y  +    LG        
Sbjct: 114 YVTMFI---YAWKLKPLPFVGNIVVA--------GLTGATPLYGAVAVEHLG-------- 154

Query: 171 PLMFATAFISCFCVVIA--FIKDLHDVDGDKKFGIKTLSVMLGKER 214
             +     I  F V +A   IKD+ DV+GD   G KTL ++ GK+R
Sbjct: 155 --LAGYLAICAFLVNVAREVIKDIEDVEGDMAKGAKTLPIIWGKKR 198

Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.

Thermococcus onnurineus (strain NA1) (taxid: 523850)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 2

>sp|B1L6Z7|DGGGP_KORCO Digeranylgeranylglyceryl phosphate synthase OS=Korarchaeum cryptofilum (strain OPF8) GN=Kcr_1480 PE=3 SV=1

 Score = 56.2 bits (134), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 85/172 (49%), Gaps = 20/172 (11%)

Query: 54  AINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAW 113
           AIN   D E+D +NKPY P+ SG IS    + I +A +L  +A ++ +    FI  +I  
Sbjct: 54  AINDYYDAEIDAINKPYRPIPSGRISKREALNIYIALSLFGIALSIFL---GFIEFLIVT 110

Query: 114 IFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLM 173
            F  + Y+      RW   + +    +VSL    T   ++  +    L   + IF+    
Sbjct: 111 AFSLSWYAYA----RWLKRTGVPGNALVSLGVAFTL--IFGSLAAGNLTNKVIIFS---- 160

Query: 174 FATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKER----VFRLSVS 221
            + AF S    +  F+K + D+ GD+  G++T++V +G +R    VF LS++
Sbjct: 161 -SVAFTSNL--IREFVKAVEDLPGDRAHGVRTIAVRIGVKRTGILVFLLSLA 209

Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.

Korarchaeum cryptofilum (strain OPF8) (taxid: 374847)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	294
295656253	401	homogentisate geranylgeranyl transferase	0.938	0.688	0.574	3e-85
171190284	317	homogentisate geranylgeranyl transferase	0.959	0.889	0.561	6e-84
219842170	411	homogentisate geranylgeranyl transferase	0.955	0.683	0.573	6e-84
224143266	284	predicted protein [Populus trichocarpa]	0.952	0.985	0.561	9e-83
147858275	406	hypothetical protein VITISV_043992 [Viti	0.938	0.679	0.537	9e-83
225446000	406	PREDICTED: homogentisate phytyltransfera	0.938	0.679	0.537	1e-82
56126261	406	homogentisate geranylgeranyl transferase	0.938	0.679	0.537	2e-82
185487419	407	homogentisate phytyltransferase [Manihot	0.938	0.678	0.545	2e-82
377657555	394	homogentisate phytyltransferase [Brassic	0.955	0.713	0.528	2e-82
297836742	393	predicted protein [Arabidopsis lyrata su	0.955	0.715	0.521	4e-82

>gi|295656253|gb|ADG26667.1| homogentisate geranylgeranyl transferase [Coriandrum sativum]

 Score =  321 bits (822), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 159/277 (57%), Positives = 207/277 (74%), Gaps = 1/277 (0%)

Query: 18  SNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGE 77
           S SLLP+ ++ DL+PA+F G ++AL+P++ M+IYVV +NQL DVE+DKVNKP LPLASGE
Sbjct: 126 SVSLLPLTSIGDLSPAFFVGYLKALIPSIFMNIYVVGLNQLFDVEIDKVNKPNLPLASGE 185

Query: 78  ISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAA 137
            SMG G AI  A  LMS A  ++ +SPP  +A++     G+AYSV+LPLLRWK N+FLAA
Sbjct: 186 YSMGLGKAIVSAFGLMSFAMGIVFQSPPVFFALLICFLFGSAYSVELPLLRWKRNAFLAA 245

Query: 138 FCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDG 197
           F ++ +  +      + HIQKYVLGRP+ +F R L FAT  IS F  VIA  KD+ DVDG
Sbjct: 246 FSILMVRAITVNLAFFYHIQKYVLGRPM-VFPRSLCFATVCISMFTTVIALFKDIPDVDG 304

Query: 198 DKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIF 257
           D+ FGI++ SV LG++RVF L + +L IAY +A+V+GASS FL +KL+T+IGH  LASI 
Sbjct: 305 DRDFGIQSFSVCLGQKRVFWLCIGILLIAYASALVIGASSSFLLSKLVTVIGHCTLASIL 364

Query: 258 WLRVRAVDLSDNASILSFYMFIWKLYYAEYLLIPFVR 294
           W R  +V+L DN+S+ SFYM IWKL+YAEYLLIPFVR
Sbjct: 365 WRRANSVNLEDNSSMTSFYMSIWKLFYAEYLLIPFVR 401

Source: Coriandrum sativum

Species: Coriandrum sativum

Genus: Coriandrum

Family: Apiaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|171190284|gb|ACB42448.1| homogentisate geranylgeranyl transferase [Angelica gigas]

 Score =  317 bits (811), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 159/283 (56%), Positives = 210/283 (74%), Gaps = 1/283 (0%)

Query: 12  QIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYL 71
            I+  TS SLLP+ +  DL+PA+F GL++ ++P V ++IYVV +NQL DVE+DKVNKP L
Sbjct: 36  SIVGITSVSLLPLVSFEDLSPAFFVGLLKVMIPIVCVNIYVVGLNQLYDVEIDKVNKPNL 95

Query: 72  PLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKG 131
           P+ASGE SM TG AI  A  LMS+   +M +SPP ++ ++   F GTAYS+ +PL RWK 
Sbjct: 96  PIASGEYSMETGKAIVSAFGLMSIIMGIMFQSPPVLYCLLVCFFFGTAYSIDVPLFRWKK 155

Query: 132 NSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKD 191
           N+FLAA C+V +  +  Q  V+ HIQ+YVLGRP+ +F+R L FA   ++ F  VIA  KD
Sbjct: 156 NAFLAAMCIVIVRAITVQLTVFYHIQQYVLGRPV-LFSRSLAFAIICMTLFVTVIALFKD 214

Query: 192 LHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHG 251
           + DVDGD+ FGI+T++V LGK+RVF L +++L IAYG+AVV+G+SS  L +KL+T+ GH 
Sbjct: 215 IPDVDGDRDFGIQTITVTLGKKRVFWLCITILLIAYGSAVVIGSSSSLLLSKLVTVTGHC 274

Query: 252 ILASIFWLRVRAVDLSDNASILSFYMFIWKLYYAEYLLIPFVR 294
           ILASI W R  +VDL  N SI SFYMFIWKL+YAEYLLIPFVR
Sbjct: 275 ILASILWSRAISVDLESNKSITSFYMFIWKLFYAEYLLIPFVR 317

Source: Angelica gigas

Species: Angelica gigas

Genus: Angelica

Family: Apiaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|219842170|dbj|BAH10642.1| homogentisate geranylgeranyl transferase [Hevea brasiliensis]

 Score =  316 bits (810), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 163/284 (57%), Positives = 211/284 (74%), Gaps = 3/284 (1%)

Query: 13  IIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLP 72
           II  TS SLLPV+T+ DL+P YF GL++ALVP+VLM+IYVV +NQL DVE+DKVNKPYLP
Sbjct: 129 IIGITSVSLLPVETIVDLSPTYFIGLLKALVPSVLMNIYVVGLNQLFDVEIDKVNKPYLP 188

Query: 73  LASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGN 132
           LASG+ SM TGI I  AS L+SL   +  +SPP + A++    +G+ YS++LP LRWK +
Sbjct: 189 LASGKFSMATGILIVSASLLLSLYMGITFQSPPLLAALLISFALGSVYSIELPFLRWKKH 248

Query: 133 SFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDL 192
           +FLAA C++ +  ++ Q   +VHIQK+VLG+ + I  R LMFATAF+  F   IA  KD+
Sbjct: 249 AFLAASCILIVRAMVVQLAFFVHIQKFVLGKSIFI-PRSLMFATAFMCFFSAAIALFKDI 307

Query: 193 HDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSP--FLANKLITIIGH 250
            DV+GD+ +GI++ SV LG+ERV  L V+ML +AYGAAVV GASSP   L  KLIT+IGH
Sbjct: 308 PDVEGDRDYGIQSFSVSLGQERVLWLCVNMLLVAYGAAVVHGASSPSSLLPVKLITMIGH 367

Query: 251 GILASIFWLRVRAVDLSDNASILSFYMFIWKLYYAEYLLIPFVR 294
             +A I W++ + VDL+   SI SFYMFIWKL+YAEY LIPFVR
Sbjct: 368 STIAWILWMKAQFVDLTSQKSITSFYMFIWKLFYAEYFLIPFVR 411

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224143266|ref|XP_002324898.1| predicted protein [Populus trichocarpa] gi|222866332|gb|EEF03463.1| predicted protein [Populus trichocarpa]

 Score =  312 bits (800), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 160/285 (56%), Positives = 209/285 (73%), Gaps = 5/285 (1%)

Query: 1   MHEFLFFVFMYQIIAT----TSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAIN 56
           +H F  F   + +I T    TS SLLPV+T+++L+P +F GL++ALVP+VLM+IYVV +N
Sbjct: 1   LHSFYQFSRPHTVIGTLIGITSVSLLPVETISELSPTFFMGLLKALVPSVLMNIYVVGLN 60

Query: 57  QLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFV 116
           QL DVE+DKVNKPYLPLASG+ SMGTG+AI  AS L S A  +M +SP    A++    +
Sbjct: 61  QLFDVEIDKVNKPYLPLASGDFSMGTGVAIVSASLLASFAMGIMFQSPLLFSALLISCVL 120

Query: 117 GTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFAT 176
           G+ YS++LP LRWK  +FLAA C++ +  ++ Q   +VH+QK+VLG+   + TR L+FAT
Sbjct: 121 GSVYSIELPFLRWKKQAFLAATCIMIVRAIVVQLAFFVHMQKFVLGKT-TVVTRSLVFAT 179

Query: 177 AFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGAS 236
           AF+  F  VIA  KD+ DVDGD+ +GI++ SV LG+ERVF L V+ML IAYGAAVVVGAS
Sbjct: 180 AFMCFFSAVIALFKDIPDVDGDRDYGIQSFSVSLGQERVFWLCVNMLLIAYGAAVVVGAS 239

Query: 237 SPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMFIWK 281
           S FL +K ITI+GH  LA I WLR R+VDL+   SI SFYMFIWK
Sbjct: 240 STFLPSKFITILGHCTLAFILWLRARSVDLTSKDSITSFYMFIWK 284

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147858275|emb|CAN79669.1| hypothetical protein VITISV_043992 [Vitis vinifera]

 Score =  312 bits (800), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 149/277 (53%), Positives = 210/277 (75%), Gaps = 1/277 (0%)

Query: 18  SNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGE 77
           S SLL V+ L+D +P +FTG++EA+V A+LM+IY+V +NQ+SD+E+DKVNKPYLPLASGE
Sbjct: 131 SVSLLAVEKLSDFSPLFFTGVLEAVVAALLMNIYIVGLNQISDIEIDKVNKPYLPLASGE 190

Query: 78  ISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAA 137
            S+GTG+ I  + A+MS     ++ S P  WA+     +GTAYS+ LPLLRWK  + +AA
Sbjct: 191 YSVGTGVGIVTSFAVMSFLVGWIVGSWPLFWALFVSFVLGTAYSIDLPLLRWKRFALVAA 250

Query: 138 FCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDG 197
            C++++  ++ Q   Y+H+Q +V GRP  +F+RPL+FATAF+S F VVIA  KD+ D++G
Sbjct: 251 MCILAVRAVIVQIAFYMHVQTFVYGRP-AVFSRPLIFATAFMSFFSVVIALFKDIPDIEG 309

Query: 198 DKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIF 257
           DK FGI++ SV LG++RVF + + +L +AYGAAV VGA+S  L +KL+T++GH +LASI 
Sbjct: 310 DKIFGIRSFSVRLGQKRVFWICILLLEMAYGAAVSVGATSSCLWSKLVTVLGHAVLASIL 369

Query: 258 WLRVRAVDLSDNASILSFYMFIWKLYYAEYLLIPFVR 294
           W R +++DL   A+I SFYMFIW+L+YAEY LIP VR
Sbjct: 370 WTRAKSIDLKSKAAITSFYMFIWQLFYAEYFLIPLVR 406

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446000|ref|XP_002267306.1| PREDICTED: homogentisate phytyltransferase 1, chloroplastic [Vitis vinifera] gi|297735423|emb|CBI17863.3| unnamed protein product [Vitis vinifera]

 Score =  311 bits (798), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 149/277 (53%), Positives = 209/277 (75%), Gaps = 1/277 (0%)

Query: 18  SNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGE 77
           S SLL V+ L+D +P +FTG++EA+V A+LM+IY+V +NQ+SD+E+DKVNKPYLPLASGE
Sbjct: 131 SVSLLAVEKLSDFSPLFFTGVLEAVVAALLMNIYIVGLNQISDIEIDKVNKPYLPLASGE 190

Query: 78  ISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAA 137
            S+GTG+ I  + A MS     ++ S P  WA+     +GTAYS+ LPLLRWK  + +AA
Sbjct: 191 YSVGTGVGIVTSFAFMSFLVGWIVGSWPLFWALFVSFVLGTAYSIDLPLLRWKRFALVAA 250

Query: 138 FCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDG 197
            C++++  ++ Q   Y+H+Q +V GRP  +F+RPL+FATAF+S F VVIA  KD+ D++G
Sbjct: 251 MCILAVRAVIVQIAFYMHVQTFVYGRP-AVFSRPLIFATAFMSFFSVVIALFKDIPDIEG 309

Query: 198 DKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIF 257
           D+ FGI++ SV LG++RVF + + +L +AYGAAV VGA+S  L +KL+T++GH +LASI 
Sbjct: 310 DRIFGIRSFSVRLGQKRVFWICILLLQMAYGAAVSVGATSSCLWSKLVTVLGHAVLASIL 369

Query: 258 WLRVRAVDLSDNASILSFYMFIWKLYYAEYLLIPFVR 294
           W R ++VDL   A+I SFYMFIW+L+YAEY LIP VR
Sbjct: 370 WTRAKSVDLKSKAAITSFYMFIWQLFYAEYFLIPLVR 406

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|56126261|gb|AAV74623.1| homogentisate geranylgeranyl transferase [Vitis vinifera]

 Score =  311 bits (798), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 149/277 (53%), Positives = 209/277 (75%), Gaps = 1/277 (0%)

Query: 18  SNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGE 77
           S SLL V+ L+D +P +FTG++EA+V A+LM+IY+V +NQ+SD+E+DKVNKPYLPLASGE
Sbjct: 131 SVSLLAVEKLSDFSPLFFTGVLEAVVAALLMNIYIVGLNQISDIEIDKVNKPYLPLASGE 190

Query: 78  ISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAA 137
            S+GTG+ I  + A MS     ++ S P  WA+     +GTAYS+ LPLLRWK  + +AA
Sbjct: 191 YSVGTGVGIVTSFAFMSFLVGWIVGSWPLFWALFVSFVLGTAYSIDLPLLRWKRFALVAA 250

Query: 138 FCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDG 197
            C++++  ++ Q   Y+H+Q +V GRP  +F+RPL+FATAF+S F VVIA  KD+ D++G
Sbjct: 251 MCILAVRAVIVQIAFYMHVQTFVYGRP-AVFSRPLIFATAFMSFFSVVIALFKDIPDIEG 309

Query: 198 DKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIF 257
           D+ FGI++ SV LG++RVF + + +L +AYGAAV VGA+S  L +KL+T++GH +LASI 
Sbjct: 310 DRIFGIRSFSVRLGQKRVFWICILLLQMAYGAAVSVGATSSCLWSKLVTVLGHAVLASIL 369

Query: 258 WLRVRAVDLSDNASILSFYMFIWKLYYAEYLLIPFVR 294
           W R ++VDL   A+I SFYMFIW+L+YAEY LIP VR
Sbjct: 370 WTRAKSVDLKSKAAITSFYMFIWQLFYAEYFLIPLVR 406

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|185487419|gb|ACC77744.1| homogentisate phytyltransferase [Manihot esculenta]

 Score =  311 bits (797), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 151/277 (54%), Positives = 209/277 (75%), Gaps = 1/277 (0%)

Query: 18  SNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGE 77
           S SLL V+ L+DL+P +FTG++EA+V A+LM+IY+V +NQL+D+E+DKVNKPYLPLASGE
Sbjct: 132 SVSLLAVEKLSDLSPLFFTGVLEAVVAALLMNIYIVGLNQLTDIEIDKVNKPYLPLASGE 191

Query: 78  ISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAA 137
            S+G G+ I  + ++MS     ++ S P  WA+     +GTAYS+ LPLLRWK  +F+AA
Sbjct: 192 YSVGIGVMIIASFSMMSFWLGWVVGSWPLFWALFVSFVLGTAYSINLPLLRWKRFAFVAA 251

Query: 138 FCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDG 197
            C++++  ++ Q   Y+H+Q +V GRP  +F+RPL+FATAF+S F VVIA  KD+ D++G
Sbjct: 252 MCILAVRAVIVQLAFYLHMQTHVYGRP-AVFSRPLIFATAFMSFFSVVIALFKDIPDIEG 310

Query: 198 DKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIF 257
           DK FGI++ +V LG+ERVF   +S+L IAYG A++VGA+S    +K IT++GH ILASI 
Sbjct: 311 DKIFGIRSFTVRLGQERVFWTCISLLEIAYGVAILVGAASSHTWSKCITVLGHAILASIL 370

Query: 258 WLRVRAVDLSDNASILSFYMFIWKLYYAEYLLIPFVR 294
           W R ++VDL   A+I S YMFIWKL+YAEYLLIP VR
Sbjct: 371 WNRAKSVDLKSKAAITSCYMFIWKLFYAEYLLIPLVR 407

Source: Manihot esculenta

Species: Manihot esculenta

Genus: Manihot

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|377657555|gb|AFB74211.1| homogentisate phytyltransferase [Brassica napus]

 Score =  311 bits (797), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 149/282 (52%), Positives = 213/282 (75%), Gaps = 1/282 (0%)

Query: 13  IIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLP 72
           +++  S S L V+ ++D++P  FTG++EA+V A++M+IY+V +NQLSDVE+DKVNKPYLP
Sbjct: 114 VLSILSVSFLAVEKVSDISPLLFTGILEAVVAALMMNIYIVGLNQLSDVEIDKVNKPYLP 173

Query: 73  LASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGN 132
           LASGE S+ TGIAI  + ++MS     ++ S P  WA+     +GTAYS+ LPLLRWK  
Sbjct: 174 LASGEYSVKTGIAIVASFSIMSFWLGWIVGSWPLFWALFVSFILGTAYSINLPLLRWKRF 233

Query: 133 SFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDL 192
           + +AA C++++  ++ Q   Y+HIQ +V GRP+ +FTRPL+FATAF+S F VVIA  KD+
Sbjct: 234 ALVAAMCILAVRAIIVQIAFYLHIQTHVFGRPV-MFTRPLIFATAFMSFFSVVIALFKDI 292

Query: 193 HDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGI 252
            D++GDK FGI++ SV LG+ERVF   VS+L +AY  A++VGA+SPF+ +K+I+++GH I
Sbjct: 293 PDIEGDKIFGIRSFSVTLGQERVFWTCVSLLQMAYAVAILVGATSPFIWSKVISVVGHVI 352

Query: 253 LASIFWLRVRAVDLSDNASILSFYMFIWKLYYAEYLLIPFVR 294
           LA+  W R ++VDLS    I S YMFIWKL+YAEYLL+PF++
Sbjct: 353 LATTLWTRAKSVDLSSKTEITSCYMFIWKLFYAEYLLLPFLK 394

Source: Brassica napus

Species: Brassica napus

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297836742|ref|XP_002886253.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297332093|gb|EFH62512.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  310 bits (795), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 147/282 (52%), Positives = 213/282 (75%), Gaps = 1/282 (0%)

Query: 13  IIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLP 72
           +++  S S L V+ ++D++P  FTG++EA+V A++M+IY+V +NQLSDVE+DKVNKPYLP
Sbjct: 113 VLSILSVSFLAVEKVSDISPLLFTGILEAVVAALMMNIYIVGLNQLSDVEIDKVNKPYLP 172

Query: 73  LASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGN 132
           LASGE S+ TGIAI  + ++MS     ++ S P  WA+     +GTAYS+ LPLLRWK  
Sbjct: 173 LASGEYSVNTGIAIVASFSIMSFWLGWIVGSWPLFWALFVSFMLGTAYSINLPLLRWKRF 232

Query: 133 SFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDL 192
           + +AA C++++  ++ Q   Y+HIQ +V GRP+ +FTRPL+FATAF+S F VVIA  KD+
Sbjct: 233 ALVAAMCILAVRAIIVQIAFYLHIQTHVFGRPI-LFTRPLIFATAFMSFFSVVIALFKDI 291

Query: 193 HDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGI 252
            D++GDK FGI++ SV LG++RVF   +S+L +AY  A++VGA+SPF+ +K+I+++GH I
Sbjct: 292 PDIEGDKIFGIRSFSVTLGQKRVFWTCISLLQMAYAVAILVGATSPFIWSKVISVVGHVI 351

Query: 253 LASIFWLRVRAVDLSDNASILSFYMFIWKLYYAEYLLIPFVR 294
           LA+  W R ++VDLS    I S YMFIWKL+YAEYLL+PF++
Sbjct: 352 LATTLWTRAKSVDLSSKTEITSCYMFIWKLFYAEYLLLPFLK 393

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	294
TAIR|locus:2044440	393	HPT1 "homogentisate phytyltran	0.955	0.715	0.503	3.1e-76
UNIPROTKB|B1B3P3	410	N8DT-1 "Naringenin 8-dimethyla	0.955	0.685	0.425	1.3e-61
UNIPROTKB|B1B5P4	407	SfN8DT-2 "Naringenin 8-dimethy	0.955	0.690	0.425	2.1e-61
TAIR|locus:4010713740	393	HST "homogentisate prenyltrans	0.843	0.631	0.369	3.5e-36
TAIR|locus:2074393	387	G4 [Arabidopsis thaliana (taxi	0.629	0.478	0.230	0.00033

TAIR|locus:2044440 HPT1 "homogentisate phytyltransferase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 768 (275.4 bits), Expect = 3.1e-76, P = 3.1e-76
 Identities = 142/282 (50%), Positives = 205/282 (72%)

Query:    13 IIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLP 72
             +++  S S L V+ ++D++P  FTG++EA+V A++M+IY+V +NQLSDVE+DKVNKPYLP
Sbjct:   113 VLSILSVSFLAVEKVSDISPLLFTGILEAVVAALMMNIYIVGLNQLSDVEIDKVNKPYLP 172

Query:    73 LASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGN 132
             LASGE S+ TGIAI  + ++MS     ++ S P  WA+     +GTAYS+ LPLLRWK  
Sbjct:   173 LASGEYSVNTGIAIVASFSIMSFWLGWIVGSWPLFWALFVSFMLGTAYSINLPLLRWKRF 232

Query:   133 SFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDL 192
             + +AA C++++  ++ Q   Y+HIQ +V GRP+ +FTRPL+FATAF+S F VVIA  KD+
Sbjct:   233 ALVAAMCILAVRAIIVQIAFYLHIQTHVFGRPI-LFTRPLIFATAFMSFFSVVIALFKDI 291

Query:   193 HDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYXXXXXXXXXXPFLANKLITIIGHGI 252
              D++GDK FGI++ SV LG++RVF   V++L +AY          PF+ +K+I+++GH I
Sbjct:   292 PDIEGDKIFGIRSFSVTLGQKRVFWTCVTLLQMAYAVAILVGATSPFIWSKVISVVGHVI 351

Query:   253 LASIFWLRVRAVDLSDNASILSFYMFIWKLYYAEYLLIPFVR 294
             LA+  W R ++VDLS    I S YMFIWKL+YAEYLL+PF++
Sbjct:   352 LATTLWARAKSVDLSSKTEITSCYMFIWKLFYAEYLLLPFLK 393

GO:0004659 "prenyltransferase activity" evidence=IEA;IDA

GO:0005886 "plasma membrane" evidence=ISM

GO:0010189 "vitamin E biosynthetic process" evidence=IMP;TAS

GO:0016021 "integral to membrane" evidence=IEA

GO:0009507 "chloroplast" evidence=ISS

GO:0010176 "homogentisate phytyltransferase activity" evidence=IMP;IDA

GO:0042362 "fat-soluble vitamin biosynthetic process" evidence=TAS

GO:0009266 "response to temperature stimulus" evidence=IMP

GO:0009915 "phloem sucrose loading" evidence=IMP

GO:0031347 "regulation of defense response" evidence=IMP

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA;IMP

GO:0071555 "cell wall organization" evidence=IMP

GO:0000096 "sulfur amino acid metabolic process" evidence=RCA

GO:0006546 "glycine catabolic process" evidence=RCA

GO:0006733 "oxidoreduction coenzyme metabolic process" evidence=RCA

GO:0006766 "vitamin metabolic process" evidence=RCA

GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA

GO:0009072 "aromatic amino acid family metabolic process" evidence=RCA

GO:0009106 "lipoate metabolic process" evidence=RCA

GO:0009108 "coenzyme biosynthetic process" evidence=RCA

GO:0009117 "nucleotide metabolic process" evidence=RCA

GO:0009416 "response to light stimulus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0015994 "chlorophyll metabolic process" evidence=RCA

GO:0019216 "regulation of lipid metabolic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019748 "secondary metabolic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0031408 "oxylipin biosynthetic process" evidence=RCA

GO:0044272 "sulfur compound biosynthetic process" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

UNIPROTKB|B1B3P3 N8DT-1 "Naringenin 8-dimethylallyltransferase 1, chloroplastic" [Sophora flavescens (taxid:49840)]

 Score = 630 (226.8 bits), Expect = 1.3e-61, P = 1.3e-61
 Identities = 120/282 (42%), Positives = 180/282 (63%)

Query:    13 IIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLP 72
             ++  T  SL+ V+ L+DL+ A+F G ++ +V  + +HI+ V +NQL D+E+DK+NKP LP
Sbjct:   130 VLGATFKSLVAVEKLSDLSLAFFIGWLQVVVAVICIHIFGVGLNQLCDIEIDKINKPDLP 189

Query:    73 LASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGN 132
             LASG++S    + IT +S ++ L +A ++ S P  W V     V +AY+V LPLLRWK  
Sbjct:   190 LASGKLSFRNVVIITASSLILGLGFAWIVDSWPLFWTVFISCMVASAYNVDLPLLRWKKY 249

Query:   133 SFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDL 192
               L A   ++   +      ++H+Q  V  RP   F RPL+F TA +S + +VIA  KD+
Sbjct:   250 PVLTAINFIADVAVTRSLGFFLHMQTCVFKRPTT-FPRPLIFCTAIVSIYAIVIALFKDI 308

Query:   193 HDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYXXXXXXXXXXPFLANKLITIIGHGI 252
              D++GD+KFGI++LS+ LG +RVF + VS+L + Y          P L +K+IT++GH +
Sbjct:   309 PDMEGDEKFGIQSLSLRLGPKRVFWICVSLLEMTYGVTILVGATSPILWSKIITVLGHAV 368

Query:   253 LASIFWLRVRAVDLSDNASILSFYMFIWKLYYAEYLLIPFVR 294
             LAS+ W   ++VDL+ N  + SFYMFIWKL+ AEY LIP  R
Sbjct:   369 LASVLWYHAKSVDLTSNVVLHSFYMFIWKLHTAEYFLIPLFR 410

GO:0004659 "prenyltransferase activity" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

UNIPROTKB|B1B5P4 SfN8DT-2 "Naringenin 8-dimethylallyltransferase" [Sophora flavescens (taxid:49840)]

 Score = 628 (226.1 bits), Expect = 2.1e-61, P = 2.1e-61
 Identities = 120/282 (42%), Positives = 177/282 (62%)

Query:    13 IIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLP 72
             ++  T  SL+ V+ L+DL+ A+F G ++ +V  + +HI+ V +NQL D+E+DK+NKP LP
Sbjct:   127 VLGATFKSLVAVERLSDLSLAFFIGWLQVVVAVICIHIFDVGLNQLCDIEIDKINKPDLP 186

Query:    73 LASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGN 132
             LASG +S    + IT +S ++ L +A ++ S P  W V        AY+V LPLLRWK  
Sbjct:   187 LASGNLSFRNVVIITASSLILGLGFAWIVGSWPLFWTVFICCMFAAAYNVDLPLLRWKKY 246

Query:   133 SFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDL 192
               L A   ++   +      ++H+Q  V  RP   F RPL+F TA +S + +VIA  KD+
Sbjct:   247 PVLTAISFIANVAVTRSLGFFLHMQTCVFKRPTT-FPRPLIFCTAIVSIYAIVIALFKDI 305

Query:   193 HDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYXXXXXXXXXXPFLANKLITIIGHGI 252
              D++GD+KFGI++LS+ LG +RVF + VS+L +AY          P L +K+IT++GH I
Sbjct:   306 PDMEGDEKFGIQSLSLRLGPKRVFWICVSLLEMAYGVTILVGATSPILWSKIITVLGHAI 365

Query:   253 LASIFWLRVRAVDLSDNASILSFYMFIWKLYYAEYLLIPFVR 294
             LAS+ W   ++ DL+ N  + SFYMFIWKL+ AEY LIP  R
Sbjct:   366 LASVLWYHAKSTDLTSNVVLQSFYMFIWKLHTAEYCLIPLFR 407

GO:0004659 "prenyltransferase activity" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:4010713740 HST "homogentisate prenyltransferase" [Arabidopsis thaliana (taxid:3702)]

 Score = 390 (142.3 bits), Expect = 3.5e-36, P = 3.5e-36
 Identities = 96/260 (36%), Positives = 145/260 (55%)

Query:    39 MEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYA 98
             +  L+  +  + Y+V INQ+ D+ +DKVNKPYLP+A+G++S+ +   + +  A+  L   
Sbjct:   141 LSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWLLVIFFAIAGLL-V 199

Query:    99 VMIRSPPFIWAVIAW-IFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQ 157
             V     PFI ++ +  +F+GT YSV  P LR K     A   + ++ G L  F VY H  
Sbjct:   200 VGFNFGPFITSLYSLGLFLGTIYSV--PPLRMKRFPVAAFLIIATVRGFLLNFGVY-HAT 256

Query:   158 KYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFR 217
             +  LG P + ++ P+ F T+F++ F +VIA  KDL DV+GD+KF I TL+  LG   +  
Sbjct:   257 RAALGLPFQ-WSAPVAFITSFVTLFALVIAITKDLPDVEGDRKFQISTLATKLGVRNIAF 315

Query:   218 LSVSMLSIAYXXXXXXXXXXPFLANKLITIIGHGILAS--IF--WLRVRAVDLSDNASIL 273
             L   +L + Y          P +    + I  H ILAS  IF  W+  +A + +  A I 
Sbjct:   316 LGSGLLLVNYVSAISLAFYMPQVFRGSLMIPAHVILASGLIFQTWVLEKA-NYTKEA-IS 373

Query:   274 SFYMFIWKLYYAEYLLIPFV 293
              +Y FIW L+YAEYLL PF+
Sbjct:   374 GYYRFIWNLFYAEYLLFPFL 393

GO:0004161 "dimethylallyltranstransferase activity" evidence=NAS

GO:0004659 "prenyltransferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0010236 "plastoquinone biosynthetic process" evidence=IMP

GO:0010355 "homogentisate farnesyltransferase activity" evidence=IDA

GO:0010356 "homogentisate geranylgeranyltransferase activity" evidence=IDA

GO:0010357 "homogentisate solanesyltransferase activity" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0016117 "carotenoid biosynthetic process" evidence=IMP

TAIR|locus:2074393 G4 [Arabidopsis thaliana (taxid:3702)]

 Score = 116 (45.9 bits), Expect = 0.00033, P = 0.00033
 Identities = 48/208 (23%), Positives = 84/208 (40%)

Query:    51 YVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWA- 109
             Y   IN   D ++D +N+PY P+ SG IS    I       L  L  A ++     +WA 
Sbjct:   150 YTQTINDWYDRDIDAINEPYRPIPSGAISEPEVITQVWVLLLGGLGIAGILD----VWAG 205

Query:   110 ----VIAWIFVG---TAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLG 162
                  + ++ +G    +Y    P L+ K N ++  F   +L       P +     +   
Sbjct:   206 HTTPTVFYLALGGSLLSYIYSAPPLKLKQNGWVGNF---ALGASYISLPWWAGQALFGTL 262

Query:   163 RPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSM 222
              P ++    L+++ A +      IA + D   V+GD+  G+++L V  G E    + V  
Sbjct:   263 TP-DVVVLTLLYSIAGLG-----IAIVNDFKSVEGDRALGLQSLPVAFGTETAKWICVGA 316

Query:   223 LSIAYXXXXXXXXXX--PFLANKLITII 248
             + I              P+ A  L+ +I
Sbjct:   317 IDITQLSVAGYLLASGKPYYALALVALI 344


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.331   0.143   0.436    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      294       284   0.00085  115 3  11 21  0.36    33
                                                     33  0.42    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  600 (64 KB)
  Total size of DFA:  188 KB (2107 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.36u 0.14s 20.50t   Elapsed:  00:00:01
  Total cpu time:  20.36u 0.14s 20.50t   Elapsed:  00:00:01
  Start:  Fri May 10 09:51:08 2013   End:  Fri May 10 09:51:09 2013

GO:0004659 "prenyltransferase activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA;TAS

GO:0046408 "chlorophyll synthetase activity" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0042793 "transcription from plastid promoter" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0009535 "chloroplast thylakoid membrane" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8VWJ1	HPT1_ARATH	2, ., 5, ., 1, ., n, 8	0.5212	0.9557	0.7150	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.5.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.XVIII.1796.1	homogentisate phytyltransferase (284 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	fgenesh4_pm.C_LG_II000277	4-hydroxyphenylpyruvate dioxygenase (EC-1.13.11.27) (444 aa)						•	•		0.901
	grail3.0003038902	MPBQ/MSBQ methyltransferase (341 aa)						•			0.899
	eugene3.00051228	SubName- Full=Putative uncharacterized protein; (340 aa)						•			0.899
	eugene3.00051120	4-hydroxyphenylpyruvate dioxygenase (343 aa)						•			0.899
	estExt_fgenesh4_pm.C_LG_VIII0681	MPBQ/MSBQ methyltransferase (341 aa)						•			0.899
	eugene3.00120625	SubName- Full=Putative uncharacterized protein; (470 aa)			•			•			0.840
	fgenesh4_pg.C_scaffold_129000030	geranylgeranyl reductase (CHL P) (210 aa)			•			•			0.836
	grail3.0001010701	geranylgeranyl reductase (CHL P) (EC-1.3.1.-) (454 aa)			•			•			0.832
	gw1.66.323.1	geranylgeranyl reductase (CHL P) (EC-1.3.1.-) (413 aa)			•			•			0.829
	eugene3.00012780	annotation not avaliable (326 aa)						•			0.800

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	294
PLN02878	280	PLN02878, PLN02878, homogentisate phytyltransferas	1e-126
PRK12887	308	PRK12887, ubiA, tocopherol phytyltransferase; Revi	9e-66
pfam01040	259	pfam01040, UbiA, UbiA prenyltransferase family	3e-15
COG0382	289	COG0382, UbiA, 4-hydroxybenzoate polyprenyltransfe	2e-13
PRK12884	279	PRK12884, ubiA, prenyltransferase; Reviewed	6e-11
TIGR01476	283	TIGR01476, chlor_syn_BchG, bacteriochlorophyll/chl	5e-10
PRK12883	277	PRK12883, ubiA, prenyltransferase UbiA-like protei	3e-09
PRK07566	314	PRK07566, PRK07566, bacteriochlorophyll/chlorophyl	3e-09
PRK09573	279	PRK09573, PRK09573, (S)-2,3-di-O-geranylgeranylgly	5e-07
TIGR02056	306	TIGR02056, ChlG, chlorophyll synthase, ChlG	7e-07
PRK12872	285	PRK12872, ubiA, prenyltransferase; Reviewed	2e-06
PRK12392	331	PRK12392, PRK12392, bacteriochlorophyll c synthase	7e-06
PLN00012	375	PLN00012, PLN00012, chlorophyll synthetase; Provis	5e-05
PRK12882	276	PRK12882, ubiA, prenyltransferase; Reviewed	3e-04
PRK12875	282	PRK12875, ubiA, prenyltransferase; Reviewed	5e-04
PRK08238	479	PRK08238, PRK08238, hypothetical protein; Validate	0.002

>gnl|CDD|178466 PLN02878, PLN02878, homogentisate phytyltransferase

 Score =  362 bits (930), Expect = e-126
 Identities = 160/281 (56%), Positives = 217/281 (77%), Gaps = 1/281 (0%)

Query: 14  IATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPL 73
           +  TS SLL V++L+D +P +FTGL+EALVPA+LM+IY+V +NQL D+E+DKVNKPYLPL
Sbjct: 1   LGITSVSLLAVESLSDFSPLFFTGLLEALVPALLMNIYIVGLNQLYDIEIDKVNKPYLPL 60

Query: 74  ASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNS 133
           ASGE S+ TG+AI  + A+MS     ++ S P  WA+     +GTAYS+ LPLLRWK ++
Sbjct: 61  ASGEFSVATGVAIVTSFAIMSFGMGWIVGSWPLFWALFVSFVLGTAYSINLPLLRWKRSA 120

Query: 134 FLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLH 193
             AA C++++  ++ Q   ++H+Q +VLGRP  +FTRPL+FATAF+  F VVIA  KD+ 
Sbjct: 121 VAAASCILAVRAVVVQLAFFLHMQTHVLGRPA-VFTRPLIFATAFMCFFSVVIALFKDIP 179

Query: 194 DVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGIL 253
           DV+GD+ FGI++ SV LG++RVF L V++L +AY AA++VGASS FL +K+IT++GHGIL
Sbjct: 180 DVEGDRIFGIRSFSVRLGQKRVFWLCVNLLEMAYAAAILVGASSSFLWSKIITVLGHGIL 239

Query: 254 ASIFWLRVRAVDLSDNASILSFYMFIWKLYYAEYLLIPFVR 294
           ASI W R ++VDLS  A+I SFYMFIWKL+YAEY LIP VR
Sbjct: 240 ASILWQRAQSVDLSSKAAITSFYMFIWKLFYAEYFLIPLVR 280

Length = 280

>gnl|CDD|183813 PRK12887, ubiA, tocopherol phytyltransferase; Reviewed

 Score =  207 bits (530), Expect = 9e-66
 Identities = 93/254 (36%), Positives = 150/254 (59%), Gaps = 5/254 (1%)

Query: 38  LMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAY 97
           L+ A +  +  ++Y+V +NQL+D+E+D++NKP+LPLA+GE S   G  I + + +++L  
Sbjct: 55  LLGAWIACLCGNVYIVGLNQLTDIEIDRINKPHLPLAAGEFSRRQGQRIVIITGILALIL 114

Query: 98  AVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQ 157
           A  +  P  +  V   + +GTAYS  LP +R K    LAA C+ ++ G++    +++H Q
Sbjct: 115 A-ALLGPWLLITVGISLLIGTAYS--LPPIRLKRFPLLAALCIFTVRGVIVNLGLFLHFQ 171

Query: 158 KYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFR 217
            ++LG  + I    +   T F+  F   IA  KD+ D++GD+++ I T ++ LGK+ VF+
Sbjct: 172 -WLLGGSVLIPP-TVWLLTLFVLVFTFAIAIFKDIPDMEGDRQYQITTFTLRLGKQAVFK 229

Query: 218 LSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYM 277
           LS  +L+  Y   + VG  S    N    I+ H IL ++ W R + VDL D  +I  FY 
Sbjct: 230 LSCWVLTACYLGMIAVGLLSLPTVNPAFLIVSHLILLALLWWRSQRVDLQDKQAIAQFYQ 289

Query: 278 FIWKLYYAEYLLIP 291
           FIWKL++ EYLL P
Sbjct: 290 FIWKLFFLEYLLFP 303

Length = 308

>gnl|CDD|216260 pfam01040, UbiA, UbiA prenyltransferase family

 Score = 73.3 bits (180), Expect = 3e-15
 Identities = 61/243 (25%), Positives = 102/243 (41%), Gaps = 19/243 (7%)

Query: 45  AVLMHIYVVAINQLSDVEVDKV--NKPYLPLASGEISMGTGIAITLASALMSLAYAVMIR 102
            +L+      +N   D E+D    NKP  PL SG IS    + + LA  L+ L  A+++ 
Sbjct: 32  LLLLQAAGNVLNDYFDYEIDADNPNKPDRPLPSGRISPREALLLGLALLLLGLLLALLL- 90

Query: 103 SPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLG 162
            P  +   +  + +G  YS   P LR K    L    +    GLL      + +  Y +G
Sbjct: 91  GPLLLLLGLLGLLLGLLYS---PPLRLKRRPLLGELVVGLAFGLL------ILLGAYAVG 141

Query: 163 RPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSM 222
                   PL+     +    + I    D+ DV+GD+K GI+TL V LG++R   L    
Sbjct: 142 G---DIPSPLLLLALPVFLLSLAILLTNDIRDVEGDRKAGIRTLPVRLGRKRALALYA-- 196

Query: 223 LSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMFIWKL 282
             +   AA+++      L   L+ ++   +LA    +  R +   +       ++FI  L
Sbjct: 197 --LLLAAALLLLLLLLLLLAPLLLLLAVLLLALALLVAARLLRRRNPEEPARTFLFIALL 254

Query: 283 YYA 285
           +  
Sbjct: 255 FGL 257

Length = 259

>gnl|CDD|223459 COG0382, UbiA, 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

 Score = 68.5 bits (168), Expect = 2e-13
 Identities = 50/256 (19%), Positives = 100/256 (39%), Gaps = 21/256 (8%)

Query: 41  ALVPAVLMHIYVVAINQLSDVEVDKVNKP--YLPLASGEISMGTGIAITLASALMSLAYA 98
           A +   L       IN L+D E+D++N      PL SG +S+   + + +   L+ LA A
Sbjct: 52  AFLAFFLARSAGYVINDLADREIDRINPRTKNRPLPSGRVSVKEALLLAILLLLLGLALA 111

Query: 99  VMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQK 158
           +++ +P      +A + +  AY         K  +FL    +    GL            
Sbjct: 112 LLL-NPLAFLLSLAALVLALAY------PFLKRFTFLPQLVLGLAFGLGALAGAAAVGGS 164

Query: 159 YVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRL 218
             L                    + +    I  + D++GD+K G+K+L V+ G ++   L
Sbjct: 165 LPL---------LAWLLLLAAILWTLGYDIIYAIQDIEGDRKAGLKSLPVLFGIKKALAL 215

Query: 219 SVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMF 278
           ++ +L     +A++V          LI ++G  + A +   ++  VD+ D  +  + +  
Sbjct: 216 ALLLLLA---SALLVLLGLLAGLLGLIYLLGLLVAALLLLYQILIVDVRDPPACFALFDV 272

Query: 279 IWKLYYAEYLLIPFVR 294
              L    ++ +    
Sbjct: 273 NLLLGLLLFIGLILAV 288

Length = 289

>gnl|CDD|183812 PRK12884, ubiA, prenyltransferase; Reviewed

 Score = 61.1 bits (149), Expect = 6e-11
 Identities = 46/192 (23%), Positives = 85/192 (44%), Gaps = 27/192 (14%)

Query: 54  AINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAW 113
           A+N   D EVD++N+P  P+ SG IS    + + +   ++ L  A +I    F+  ++  
Sbjct: 55  ALNDYFDYEVDRINRPDRPIPSGRISRREALLLAILLFILGLIAAYLISPLAFLVVILVS 114

Query: 114 IFVGTAYSVQLPLLRWKGN---SFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTR 170
           +  G  Y+ +L      GN   +FL     +                   +G   E    
Sbjct: 115 VL-GILYNWKLKEYGLIGNLYVAFLTGMTFI--------------FGGIAVGELNEAVI- 158

Query: 171 PLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAA 230
            L+ A AF+      I   KD+ DV+GD+  G +TL+++ G++   R++ ++  +A    
Sbjct: 159 -LLAAMAFLMTLGREIM--KDIEDVEGDRLRGARTLAILYGEKIAGRIAAALFILA---- 211

Query: 231 VVVGASSPFLAN 242
            V+ +  P+L  
Sbjct: 212 -VLLSPLPYLFG 222

Length = 279

>gnl|CDD|130541 TIGR01476, chlor_syn_BchG, bacteriochlorophyll/chlorophyll synthetase

 Score = 58.6 bits (142), Expect = 5e-10
 Identities = 40/194 (20%), Positives = 82/194 (42%), Gaps = 21/194 (10%)

Query: 38  LMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAY 97
           L+  L+   L   +  +IN   D +VD +N+P  P+ SG IS+       L   +  L  
Sbjct: 40  LLGMLMAGPLGTGFSQSINDYFDRDVDAINEPQRPIPSGIISLREVRWNWLVLTVAGLLV 99

Query: 98  AVMIRSPPFIWAVIAWIFVGTAYSVQLPLLR---WKGNSFLAAFCMVSLNGLLTQFPVYV 154
           A+++ +   +   +  I +   YS+    L+   W G   +       L  +        
Sbjct: 100 ALVLGNWLIVLFTVVGIVLAVIYSMPPIKLKRNGWLGPPAVGL-SYEGLPWM-------- 150

Query: 155 HIQKYVLGRPL--EIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGK 212
               + +  PL  +     L+++          I  + D   V+GD++ G+++L VM+G 
Sbjct: 151 --AGHAIFAPLTWQSVVVALIYSLGAHG-----IMTLNDFKSVEGDRQLGLRSLPVMIGV 203

Query: 213 ERVFRLSVSMLSIA 226
           +R   ++V+ +++ 
Sbjct: 204 KRAAIVAVTTINVF 217

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 283

>gnl|CDD|171796 PRK12883, ubiA, prenyltransferase UbiA-like protein; Reviewed

 Score = 56.7 bits (137), Expect = 3e-09
 Identities = 50/186 (26%), Positives = 86/186 (46%), Gaps = 26/186 (13%)

Query: 55  INQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWI 114
           IN   D E+DK+N+P  PL  G +S    +  +L    + LA A +I    F++A+ A++
Sbjct: 56  INDYFDYEIDKINRPNRPLPRGAMSRKAALYYSLLLFAVGLALAYLINIEAFLFALGAYV 115

Query: 115 FVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMF 174
            +   Y+ +L  L + GN  +A     +        P+Y  I    +G          + 
Sbjct: 116 LM-FLYAWKLKPLPFIGNVVVALLTGAT--------PIYGAIAVGRIG----------LA 156

Query: 175 ATAFISCFCVVIA--FIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVV 232
               I  F V +A   +KD+ D++GDK  G KTL +++GK+R      + +   +G   V
Sbjct: 157 GYLAICAFLVNVAREIMKDIEDIEGDKAKGAKTLPIIIGKKR-----AAYIGAIFGVLTV 211

Query: 233 VGASSP 238
           + +  P
Sbjct: 212 IASFLP 217

Length = 277

>gnl|CDD|236052 PRK07566, PRK07566, bacteriochlorophyll/chlorophyll a synthase; Reviewed

 Score = 56.5 bits (137), Expect = 3e-09
 Identities = 43/187 (22%), Positives = 81/187 (43%), Gaps = 24/187 (12%)

Query: 54  AINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAW 113
            +N   D EVD +N+PY P+ SG IS+   + +     ++ LA A ++    F+ A++  
Sbjct: 83  TLNDYFDREVDAINEPYRPIPSGAISLRWVLYLIAVLTVLGLAVAYLLGPWVFLAALLG- 141

Query: 114 IFVGTAYSVQLPLLR-----WKGNSFLAAFCMVSLNGL--LTQFPVYVHIQKYVLGRPLE 166
           +F+   YS   P LR     W GN  +      S  GL        +             
Sbjct: 142 LFLAWIYSA--PPLRLKQNGWLGNYAVGL----SYEGLPWWAGAAAFGAGL--------- 186

Query: 167 IFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIA 226
             + P++      S     I  + D   V+GD++ G+++L V+ G++   R++  ++ + 
Sbjct: 187 -PSWPIVILALLYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGEKNAARIACVVIDLF 245

Query: 227 YGAAVVV 233
             A + +
Sbjct: 246 QLAVIAL 252

Length = 314

>gnl|CDD|181963 PRK09573, PRK09573, (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

 Score = 49.6 bits (119), Expect = 5e-07
 Identities = 45/176 (25%), Positives = 81/176 (46%), Gaps = 23/176 (13%)

Query: 54  AINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAW 113
            IN + D+E+DK+NKP  P+ SG IS+      ++   ++ L  ++ I    F+ A++  
Sbjct: 55  VINDIYDIEIDKINKPERPIPSGRISLKEAKIFSITLFIVGLILSIFINIYAFLIALLNS 114

Query: 114 IFVGTAYSVQLPLLRWKGN---SFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTR 170
           I +   Y+  L      GN   ++L       + G L  F V   I              
Sbjct: 115 ILL-YLYAKDLKKTGLIGNLIVAYLTGL--SFIFGGLAVFNVLRII-------------- 157

Query: 171 PLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIA 226
            ++F  AF S +   I  +KD+ D++GD K  + TL +  G ++ + ++  +L +A
Sbjct: 158 -ILFLCAFFSTWSREI--VKDIEDIEGDLKENVITLPIKYGIKKSWYIAKILLILA 210

Length = 279

>gnl|CDD|131111 TIGR02056, ChlG, chlorophyll synthase, ChlG

 Score = 49.2 bits (117), Expect = 7e-07
 Identities = 48/206 (23%), Positives = 81/206 (39%), Gaps = 19/206 (9%)

Query: 51  YVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMI------RSP 104
           Y   IN   D ++D +N+PY P+ SG IS    I   +   +  +A A ++        P
Sbjct: 69  YTQTINDFYDRDIDAINEPYRPIPSGAISEPEVITQIVLLFIAGIAIAFILDLWAGHEFP 128

Query: 105 PFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRP 164
                 +   F+   YS   P L+ K N +L  F + +          Y+ +  +     
Sbjct: 129 NVFVLALFGSFIAFIYSA--PPLKLKQNGWLGNFALGA---------SYIALPWWAGHAL 177

Query: 165 LEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLS 224
                  +   T   S   + IA + D   V+GD+  G+++L V  G E    + V  + 
Sbjct: 178 FGELNPDIAVLTLIYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGIETAAWICVGAID 237

Query: 225 IAYG--AAVVVGASSPFLANKLITII 248
           I  G  AA ++       A  L+ +I
Sbjct: 238 IFQGLIAAYLLAIGENLYAAALVALI 263

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP) [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 306

>gnl|CDD|237241 PRK12872, ubiA, prenyltransferase; Reviewed

 Score = 48.0 bits (115), Expect = 2e-06
 Identities = 46/198 (23%), Positives = 83/198 (41%), Gaps = 24/198 (12%)

Query: 45  AVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSP 104
             L+   V  IN L+D+E D +NKP   + S   + G  + + +    +      +I  P
Sbjct: 45  TFLIAAAVYIINYLTDLEEDIINKPERVVFSETKAYGLFLLLNVLGLYLGAYLLAVIGGP 104

Query: 105 PFIWAVIAWIFVGTAYSV-------QLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQ 157
            F    I  + +G  YSV       ++PL     N  ++      L  L        + Q
Sbjct: 105 KFALIFIIPLILGILYSVFFKRRLKRIPLF---KNLVVS-----LLWALSPLILGVYYYQ 156

Query: 158 KYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFR 217
             +           L+    FI     +   + D+ D++GD+K G+KTL ++LGKER   
Sbjct: 157 LTI--------FSLLLLYAVFIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGKERT-L 207

Query: 218 LSVSMLSIAYGAAVVVGA 235
             + +L++ +   +++G 
Sbjct: 208 KFLLILNLLFLILLILGV 225

Length = 285

>gnl|CDD|171463 PRK12392, PRK12392, bacteriochlorophyll c synthase; Provisional

 Score = 46.2 bits (110), Expect = 7e-06
 Identities = 45/183 (24%), Positives = 88/183 (48%), Gaps = 20/183 (10%)

Query: 54  AINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMI-------RSPPF 106
           ++N   D+E+D+VN+P  P+ SG +S    +  ++   L+++   V +       R    
Sbjct: 68  SVNDYFDLELDRVNEPTRPIPSGRLSEKEALWNSIIVLLLAIGLGVWLGLHIGGERGMVI 127

Query: 107 IWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLE 166
           I +++A +FV   YS   P L+ K N   +A  +    G +T          ++    L 
Sbjct: 128 ISSILAGLFVAYIYSA--PPLKLKKNILTSAPAVGFSYGFIT----------FLSANALF 175

Query: 167 IFTRPLMFATAFISCF-CVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSI 225
              RP +   A ++ F  + +  + D   V+GDK+ G+K+L+VM+G +  F +S  ++ +
Sbjct: 176 SDIRPEVVWLAGLNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIGAKNTFLVSFIIIDL 235

Query: 226 AYG 228
            + 
Sbjct: 236 VFA 238

Length = 331

>gnl|CDD|215028 PLN00012, PLN00012, chlorophyll synthetase; Provisional

 Score = 44.1 bits (104), Expect = 5e-05
 Identities = 55/222 (24%), Positives = 91/222 (40%), Gaps = 51/222 (22%)

Query: 51  YVVAINQLSDVEVDKVNKPYLPLASGEISMG---TGIAITLASALMSLAYAVMIRS---- 103
           Y   IN   D E+D +N+PY P+ SG IS     T I + L   L  LAY + + +    
Sbjct: 138 YTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLGGL-GLAYTLDVWAGHDF 196

Query: 104 PPFIWAVIAWIFVGTAYSVQLPLLR-----WKGNSFLAA-------FCMVSLNGLLTQFP 151
           P   +  +    +   YS   P L+     W GN  L A       +   +L G LT   
Sbjct: 197 PIVFYLALGGSLLSYIYSA--PPLKLKQNGWIGNYALGASYISLPWWAGQALFGTLT--- 251

Query: 152 VYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLG 211
                         ++    L+++ A +      IA + D   ++GD+  G+++L V  G
Sbjct: 252 -------------PDVVVLTLLYSIAGLG-----IAIVNDFKSIEGDRALGLQSLPVAFG 293

Query: 212 KER-----VFRLSVSMLSIAYGAAVVVGASSPFLANKLITII 248
            E      V  + ++ LS+   A  ++    P+ A  L+ +I
Sbjct: 294 VETAKWICVGSIDITQLSV---AGYLLAIGKPYYALALLGLI 332

Length = 375

>gnl|CDD|183811 PRK12882, ubiA, prenyltransferase; Reviewed

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 43/187 (22%), Positives = 77/187 (41%), Gaps = 31/187 (16%)

Query: 54  AINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVI-- 111
           AIN   D E+D++N+P  P+ SG +S    +A ++      +A A ++       A+   
Sbjct: 56  AINDYFDREIDRINRPDRPIPSGAVSPRGALAFSILLFAAGVALAFLLPPLCLAIALFNS 115

Query: 112 ------AWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPL 165
                 A    GT       +    G++FL     V   GLL                  
Sbjct: 116 LLLVLYAETLKGTPGLGNASVAYLTGSTFLFGGAAVGTEGLLALLV-------------- 161

Query: 166 EIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSI 225
                  +FA A ++     I  IKD+ D++GD+  G +TL +++G  +   ++ + L +
Sbjct: 162 -------LFALAALATLAREI--IKDVEDIEGDRAEGARTLPILIGVRKALYVAAAFLLV 212

Query: 226 AYGAAVV 232
           A  A+ +
Sbjct: 213 AVAASPL 219

Length = 276

>gnl|CDD|237243 PRK12875, ubiA, prenyltransferase; Reviewed

 Score = 40.8 bits (96), Expect = 5e-04
 Identities = 51/241 (21%), Positives = 96/241 (39%), Gaps = 29/241 (12%)

Query: 26  TLADL-TPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGI 84
           ++ADL +PA        L PA   ++++  +N + D + D++N               G 
Sbjct: 37  SVADLFSPAAVALFAYFLFPA---NVFLYGVNDVFDADTDELNPKK---DREREVRYRGD 90

Query: 85  AITLASALMS--LAYAVMIRSPPFIWAVI-AWIFVGTAYSVQLPLLRWKGNSFLAAFCMV 141
              L +  +S  LA A ++  PP  W  + A++ +   YS   P LR+K    L +    
Sbjct: 91  RRVLVAVALSGALALAFLLVLPPAAWPALLAFLVLSVEYSA--PPLRFKTTPVLDS---- 144

Query: 142 SLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKF 201
             NGL        +I   V    L   + P + A A    + + +     + D++ D+  
Sbjct: 145 LSNGL--------YILPGVAAYALVSGSLPPLLAVAGGWLWAMGMHTFSAIPDIEPDRAA 196

Query: 202 GIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRV 261
           GI+T + +LG+ R +    +       AA    A    L    + ++   ++ +I    +
Sbjct: 197 GIRTTATVLGERRTYAYCAACWL---LAAAAFAAVDLRLG--ALLLVYPALVLAILRAGI 251

Query: 262 R 262
            
Sbjct: 252 A 252

Length = 282

>gnl|CDD|236195 PRK08238, PRK08238, hypothetical protein; Validated

 Score = 39.1 bits (92), Expect = 0.002
 Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 5/77 (6%)

Query: 50  IYVVAINQLSDVEVDK--VNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFI 107
           +Y+  +N L D+E D+    K   P ASG + +  G+A      L  LA A+ +  P F+
Sbjct: 242 VYI--LNDLLDLEADRAHPRKRRRPFASGALPIPFGLAAAPLLLLAGLALALAL-GPAFL 298

Query: 108 WAVIAWIFVGTAYSVQL 124
             ++A++ +  AYS++L
Sbjct: 299 LVLLAYLALTLAYSLRL 315

Length = 479

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	294
PLN02878	280	homogentisate phytyltransferase	100.0
PRK12887	308	ubiA tocopherol phytyltransferase; Reviewed	100.0
PRK12888	284	ubiA prenyltransferase; Reviewed	100.0
PRK12895	286	ubiA prenyltransferase; Reviewed	100.0
TIGR01475	282	ubiA_other putative 4-hydroxybenzoate polyprenyltr	100.0
PLN02809	289	4-hydroxybenzoate nonaprenyltransferase	100.0
PRK12876	300	ubiA prenyltransferase; Reviewed	100.0
PRK13106	300	ubiA prenyltransferase; Reviewed	100.0
PRK12874	291	ubiA prenyltransferase; Reviewed	100.0
PRK12870	290	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	100.0
COG0382	289	UbiA 4-hydroxybenzoate polyprenyltransferase and r	100.0
PRK12886	291	ubiA prenyltransferase; Reviewed	100.0
PRK12848	282	ubiA 4-hydroxybenzoate octaprenyltransferase; Revi	100.0
TIGR01474	281	ubiA_proteo 4-hydroxybenzoate polyprenyl transfera	100.0
PRK12882	276	ubiA prenyltransferase; Reviewed	100.0
PRK12873	294	ubiA prenyltransferase; Reviewed	100.0
PRK12884	279	ubiA prenyltransferase; Reviewed	100.0
PRK12847	285	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	100.0
PRK12392	331	bacteriochlorophyll c synthase; Provisional	100.0
PRK12878	314	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	100.0
TIGR01476	283	chlor_syn_BchG bacteriochlorophyll/chlorophyll syn	100.0
PRK09573	279	(S)-2,3-di-O-geranylgeranylglyceryl phosphate synt	100.0
PRK07566	314	bacteriochlorophyll/chlorophyll a synthase; Review	100.0
PRK12869	279	ubiA protoheme IX farnesyltransferase; Reviewed	100.0
TIGR02056	306	ChlG chlorophyll synthase, ChlG. This model repres	99.98
PLN00012	375	chlorophyll synthetase; Provisional	99.98
PRK04375	296	protoheme IX farnesyltransferase; Provisional	99.98
PRK05951	296	ubiA prenyltransferase; Reviewed	99.98
TIGR01473	280	cyoE_ctaB protoheme IX farnesyltransferase. This m	99.97
PRK13595	292	ubiA prenyltransferase; Provisional	99.97
KOG1381	353	consensus Para-hydroxybenzoate-polyprenyl transfer	99.97
PRK06080	293	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.97
PRK12883	277	ubiA prenyltransferase UbiA-like protein; Reviewed	99.97
PRK13387	317	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.96
PRK13362	306	protoheme IX farnesyltransferase; Provisional	99.96
PF01040	257	UbiA: UbiA prenyltransferase family; InterPro: IPR	99.96
TIGR00751	284	menA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	99.96
PRK12871	297	ubiA prenyltransferase; Reviewed	99.96
PRK12872	285	ubiA prenyltransferase; Reviewed	99.96
PRK13591	307	ubiA prenyltransferase; Provisional	99.95
PLN02776	341	prenyltransferase	99.95
PRK07419	304	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.95
TIGR02235	285	menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytylt	99.94
PLN02922	315	prenyltransferase	99.94
PRK13592	299	ubiA prenyltransferase; Provisional	99.93
PRK13105	282	ubiA prenyltransferase; Reviewed	99.93
COG1575	303	MenA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	99.92
PRK12875	282	ubiA prenyltransferase; Reviewed	99.92
COG0109	304	CyoE Polyprenyltransferase (cytochrome oxidase ass	99.91
PRK12324	295	phosphoribose diphosphate:decaprenyl-phosphate pho	99.76
PRK08238	479	hypothetical protein; Validated	99.71
KOG1380	409	consensus Heme A farnesyltransferase [Coenzyme tra	99.25
KOG4581	359	consensus Predicted membrane protein [Function unk	98.93
COG1575	303	MenA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	94.41
PRK13387	317	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	93.57
PRK13591	307	ubiA prenyltransferase; Provisional	93.13
PRK12872	285	ubiA prenyltransferase; Reviewed	91.45
PLN02922	315	prenyltransferase	91.16
PRK07419	304	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	90.91
PRK13105	282	ubiA prenyltransferase; Reviewed	90.79
COG0382	289	UbiA 4-hydroxybenzoate polyprenyltransferase and r	90.43
PRK12884	279	ubiA prenyltransferase; Reviewed	89.36
TIGR02235	285	menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytylt	88.67
PRK12875	282	ubiA prenyltransferase; Reviewed	88.41
PLN00012	375	chlorophyll synthetase; Provisional	88.08
PF01040	257	UbiA: UbiA prenyltransferase family; InterPro: IPR	87.87
PRK06080	293	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	87.71
TIGR01474	281	ubiA_proteo 4-hydroxybenzoate polyprenyl transfera	87.01
TIGR01476	283	chlor_syn_BchG bacteriochlorophyll/chlorophyll syn	86.92
PRK07566	314	bacteriochlorophyll/chlorophyll a synthase; Review	86.9
PRK12392	331	bacteriochlorophyll c synthase; Provisional	86.66
TIGR02056	306	ChlG chlorophyll synthase, ChlG. This model repres	86.33
PLN02809	289	4-hydroxybenzoate nonaprenyltransferase	85.91
PRK12847	285	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	85.61
PRK12324	295	phosphoribose diphosphate:decaprenyl-phosphate pho	84.95
TIGR00751	284	menA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	84.51
TIGR01475	282	ubiA_other putative 4-hydroxybenzoate polyprenyltr	83.64
PRK13106	300	ubiA prenyltransferase; Reviewed	83.63
PRK13592	299	ubiA prenyltransferase; Provisional	82.19
PRK09573	279	(S)-2,3-di-O-geranylgeranylglyceryl phosphate synt	81.86
PRK12871	297	ubiA prenyltransferase; Reviewed	81.65
PRK12887	308	ubiA tocopherol phytyltransferase; Reviewed	81.01
PRK12848	282	ubiA 4-hydroxybenzoate octaprenyltransferase; Revi	80.33
PRK12870	290	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	80.02

>PLN02878 homogentisate phytyltransferase

Probab=100.00  E-value=8.5e-58  Score=405.02  Aligned_cols=279  Identities=57%  Similarity=1.012  Sum_probs=253.4

Q ss_pred             HHHHHhhhhccccCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcccChhhhhhcCCCCcccccccCHHHHHHHHHHHHHHH
Q 022643           15 ATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMS   94 (294)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~l~~~a~~~iNd~~D~~~D~~n~p~Rpi~sG~is~~~a~~~~~~~~~~~   94 (294)
                      |+++.++++.+..+|.++.++.+.+++++++++++.+...+|||+|+|+||+|||+||+|||++|+++++.....+.++|
T Consensus         2 ~~~~~~l~a~~~~~~~~~~~~~~~l~~~~~~l~~niyivglNd~~D~EIDkINkP~rPIpSG~iS~~~a~~~~~~~~~lg   81 (280)
T PLN02878          2 GITSVSLLAVESLSDFSPLFFTGLLEALVPALLMNIYIVGLNQLYDIEIDKVNKPYLPLASGEFSVATGVAIVTSFAIMS   81 (280)
T ss_pred             chhHHhHHHhhccccccHHHHHHHHHHHHHHHhhhhheechhhhhhhcccccCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence            56677778888899999889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHhcCCccccccccCchhhHHHHHHHhhhHhHHHHHHHHHHHhhcCCccccchHHHH
Q 022643           95 LAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMF  174 (294)
Q Consensus        95 l~l~~~l~~~~~~~~~~~~~~l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~~~~~g~~~~~~~~~~~~  174 (294)
                      +.+++.+|++++..+...++++++.||.++||+|+||+++++..+....++....+|++.+..++++|++. .++.+.++
T Consensus        82 ~~la~~~g~~~l~~al~~~~~lg~~YS~~lp~lr~k~~~~~aa~~i~~vr~~~v~l~~~~h~~~~~~g~~~-~~~~~~~~  160 (280)
T PLN02878         82 FGMGWIVGSWPLFWALFVSFVLGTAYSINLPLLRWKRSAVAAASCILAVRAVVVQLAFFLHMQTHVLGRPA-VFTRPLIF  160 (280)
T ss_pred             HHHHHHHChHHHHHHHHHHHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHhCCcc-ccchhHHH
Confidence            99999999887877767777889999987899999999999998887778888889999887778888643 34445555


Q ss_pred             HHHHHHHHHHHHHHHhhcCChHhhHhcCCccchhhccHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHH
Q 022643          175 ATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILA  254 (294)
Q Consensus       175 ~~~~~~~~~~~~~~i~d~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (294)
                      ...++.++..+++++||++|+||||+.|+||+|+++|+|++++++..++.++|...+..|..++..+.......+|.+.+
T Consensus       161 ~~~f~~~f~~~i~i~KDi~DieGD~~~Gi~Tlpv~lG~~~~~~i~~~ll~~aY~~~i~~g~~~~~~~~~~~~~~~h~~l~  240 (280)
T PLN02878        161 ATAFMCFFSVVIALFKDIPDVEGDRIFGIRSFSVRLGQKRVFWLCVNLLEMAYAAAILVGASSSFLWSKIITVLGHGILA  240 (280)
T ss_pred             HHHHHHHHHHHHHHHhhCcCchhHHHCCCceechhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            55567778888999999999999999999999999999999999999999999988888988887777788899999999


Q ss_pred             HHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHhhhhccC
Q 022643          255 SIFWLRVRAVDLSDNASILSFYMFIWKLYYAEYLLIPFVR  294 (294)
Q Consensus       255 ~~l~~~~~~~d~~~~~~~~~f~~~~~~l~~~~y~~~~~~~  294 (294)
                      ..+++|.+++|.+++++..+|||+||++||.||+++|++|
T Consensus       241 ~~L~~rs~~vD~~sk~~i~~fY~fiwklfy~ey~l~p~~~  280 (280)
T PLN02878        241 SILWQRAQSVDLSSKAAITSFYMFIWKLFYAEYFLIPLVR  280 (280)
T ss_pred             HHHHHHhHhcCcccHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999987

>PRK12887 ubiA tocopherol phytyltransferase; Reviewed

Probab=100.00  E-value=1.2e-50  Score=370.80  Aligned_cols=282  Identities=33%  Similarity=0.601  Sum_probs=227.8

Q ss_pred             HHHHHHHHHHHHhhhhccccCCC-cHHHHHHHHHHHHHHHHHHHHHHHhhcccChhhhhhcCCCCcccccccCHHHHHHH
Q 022643            8 VFMYQIIATTSNSLLPVQTLADL-TPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAI   86 (294)
Q Consensus         8 ~~~~t~~~~~~~~~~~~~~~~~~-~~~~l~~~l~~ll~~~l~~~a~~~iNd~~D~~~D~~n~p~Rpi~sG~is~~~a~~~   86 (294)
                      +.++|.+++++.++.+.....+. ....+...+..++++..++.+.+.+|||+|+|+||+|||+||+++|++|+++++..
T Consensus        24 t~igt~l~~~~~~l~a~~~~~~~~~~~~~~~~l~~~~~~~~~nv~i~~iNd~~D~~iD~inkp~rPiasG~ls~~~a~~~  103 (308)
T PRK12887         24 TIIGTSLSVLGLYLIAIAASSNTIALANLGLLLGAWIACLCGNVYIVGLNQLTDIEIDRINKPHLPLAAGEFSRRQGQRI  103 (308)
T ss_pred             HHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhcCCCCCCcCCcccCHHHHHHH
Confidence            46788888877765553333322 22234444445555555555555599999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcCCccccccccCchhhHHHHHHHhhhHhHHHHHHHHHHHhhcCCcc
Q 022643           87 TLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLE  166 (294)
Q Consensus        87 ~~~~~~~~l~l~~~l~~~~~~~~~~~~~~l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~~~~~g~~~~  166 (294)
                      ..++.++++.+++..|++.+. ..+++.++++.||  .||+|+||+|+.++++++..+|..+.+|.+.+......+..  
T Consensus       104 ~~~~~~lal~la~~~~~~~~~-~~~~~~~lg~~Ys--~pP~rlKr~~~~~~~~i~~~~g~i~~~g~~~~~~~~~~~~~--  178 (308)
T PRK12887        104 VIITGILALILAALLGPWLLI-TVGISLLIGTAYS--LPPIRLKRFPLLAALCIFTVRGVIVNLGLFLHFQWLLGGSV--  178 (308)
T ss_pred             HHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHc--CCchhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccc--
Confidence            999999999999988876544 4467888899999  59999999999999988877887777776553222222221  


Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHhhcCChHhhHhcCCccchhhccHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHH
Q 022643          167 IFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLIT  246 (294)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~i~d~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  246 (294)
                      .++...++...+.++|+.+++++||++|+|||++.|+||+|+++|+|++++++..++.++|+..+..+......+...++
T Consensus       179 ~~~~~~~l~~~~~~~~~~~~~l~~di~D~egD~~~Gi~Tlav~lG~~~a~~l~~~ll~~~y~~~i~~~~~~~~~~~~~~~  258 (308)
T PRK12887        179 LIPPTVWLLTLFVLVFTFAIAIFKDIPDMEGDRQYQITTFTLRLGKQAVFKLSCWVLTACYLGMIAVGLLSLPTVNPAFL  258 (308)
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcchhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            24455566667788899999999999999999999999999999999999999999999999877777666666655666


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHhhhhccC
Q 022643          247 IIGHGILASIFWLRVRAVDLSDNASILSFYMFIWKLYYAEYLLIPFVR  294 (294)
Q Consensus       247 ~~~~~~~~~~l~~~~~~~d~~~~~~~~~f~~~~~~l~~~~y~~~~~~~  294 (294)
                      .++|.+.+.++++|.+++|.+|+++..+|||+||++||.||+++|++|
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~iw~l~~~ey~~~~~~~  306 (308)
T PRK12887        259 IVSHLILLALLWWRSQRVDLQDKQAIAQFYQFIWKLFFLEYLLFPIAC  306 (308)
T ss_pred             HHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            799999999999999999999999999999999999999999999976

>PRK12888 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=4e-36  Score=272.15  Aligned_cols=250  Identities=17%  Similarity=0.176  Sum_probs=188.5

Q ss_pred             hHHHHHHHHHHHHHhhhhccccCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcccChhhhhhcCC--CCcccccccCHHHH
Q 022643            6 FFVFMYQIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKP--YLPLASGEISMGTG   83 (294)
Q Consensus         6 ~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~l~~~a~~~iNd~~D~~~D~~n~p--~Rpi~sG~is~~~a   83 (294)
                      .++.|.+..|...+...+.+   .++   +..++...++.+++++++|++||++|+|+|++|+|  +||+|+|++|++|+
T Consensus        15 ~~a~~~~~~~~~~~~~~~~~---~~~---~~~~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL~sG~is~~~a   88 (284)
T PRK12888         15 VFALPFAYIAALTAMFASDG---SVH---WADLLLVTVAMVGARTFAMAANRIIDREIDARNPRTAGRELVTGAVSVRTA   88 (284)
T ss_pred             HHHHHHHHHHHHHHHHHCCC---CCC---HHHHHHHHHHHHHHHHHHHHHHhHHhhCCCCCCCCCCCCCCCCCCCCHHHH
Confidence            44556655555443322211   133   33345678899999999999999999999999984  89999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcCCccccccccCchhhHHHHHHHhhhHhHHHHHHHHHHHhhcC
Q 022643           84 IAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGR  163 (294)
Q Consensus        84 ~~~~~~~~~~~l~l~~~l~~~~~~~~~~~~~~l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~~~~~g~  163 (294)
                      +.+...+..+++.++..+|+.+.... ..+++....|+.      .||++.++++..++..+..+..     ++.+..|.
T Consensus        89 ~~~~~~~~~~~l~l~~~l~~~~~~l~-~~~~~~~~~Y~~------~Kr~t~~~~~~lg~~~~~~~l~-----g~~a~~g~  156 (284)
T PRK12888         89 WTGALVALAVFLGAAALLNPLCLALA-PLAVAPLVVYPY------AKRFTNFPHAILGLAQAVGPVG-----AWIAVTGT  156 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHH------hhcccchhhHHHHHHHHHHHHH-----HHHHHcCC
Confidence            99988888888888888887766544 345555778984      6999988888776554432222     22233343


Q ss_pred             CccccchHHHHHHHHHHHHHHHHHHHhhcCChHhhHhcCCccchhhccHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHH
Q 022643          164 PLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANK  243 (294)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~  243 (294)
                          .++..+++.....+|+.+++++|++||+|+|++.|+||+|+++|+|+++++...+..+++..+...+.....++  
T Consensus       157 ----~~~~~~ll~~~~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~~~a~~~~~~~~~~~~~ll~~~~~~~~~~~--  230 (284)
T PRK12888        157 ----WSWPAVLLGLAVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGVRAALWASRVAHVVTFALFVWFGLAVGFGA--  230 (284)
T ss_pred             ----CCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCchhHHHHHHHHHHHHHHHHHHHHHHhCCcH--
Confidence                35555666677889999999999999999999999999999999999998777776677766667777766666  


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCChHHHH-HHH-HHHH
Q 022643          244 LITIIGHGILASIFWLRVRAVDLSDNASIL-SFY-MFIW  280 (294)
Q Consensus       244 ~~~~~~~~~~~~~l~~~~~~~d~~~~~~~~-~f~-~~~~  280 (294)
                       .|.++..+.+..+.+|++.+|++|+++|. .|| .|.|
T Consensus       231 -~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ff~~n~~  268 (284)
T PRK12888        231 -LWWIGLAITAGAFAYEHAIVSPTDLSRVNRAFFTANGF  268 (284)
T ss_pred             -HHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHhhH
Confidence             44567788899999999999999988775 766 4433

>PRK12895 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=3.3e-36  Score=271.97  Aligned_cols=226  Identities=18%  Similarity=0.121  Sum_probs=175.7

Q ss_pred             HHHHHHHHHHHHHHHHhhcccChhhhhhcCC--CCcccccccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 022643           39 MEALVPAVLMHIYVVAINQLSDVEVDKVNKP--YLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFV  116 (294)
Q Consensus        39 l~~ll~~~l~~~a~~~iNd~~D~~~D~~n~p--~Rpi~sG~is~~~a~~~~~~~~~~~l~l~~~l~~~~~~~~~~~~~~l  116 (294)
                      +...++.+++++++|++||+.|+|+|++|+|  +||+|+|++|++||+.+..++.++++.+.+++|+.++..+ .....+
T Consensus        40 ~l~~~~~~~~rsag~~~Ndi~Dr~iD~~~~RT~~RPLpsG~is~~~A~~~~~~~~~~~~~~~~~ln~l~~~l~-~~~~~l  118 (286)
T PRK12895         40 LLILIAAVSARTSAMSINRIEGLRYDMINPRKKDWALVSGRIKMREAIAFTIIFIAIFEICTFLLNRLVFILS-PIVIFL  118 (286)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHhcccCCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHH
Confidence            3456688899999999999999999999965  9999999999999999999999999998888998876644 345555


Q ss_pred             HHHhcCCccccccccCchhhHHHHHHHhhhHhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHHhhcCChH
Q 022643          117 GTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVD  196 (294)
Q Consensus       117 ~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~D~e  196 (294)
                      ...|+.      +||++.++++..+...|..+..     ++.++.|..  +.....++++....+|+.++|++|++||+|
T Consensus       119 ~~~yp~------~KR~t~~~~~~lG~~~g~~~l~-----g~~Av~g~~--~~~~~~~~l~~~~~~W~~g~D~iYa~qD~e  185 (286)
T PRK12895        119 FIIDPF------LKRYTAWRHIYMGSIIGLGVLA-----GYLAVIPAF--PYNLLIYIIFISSSLWIAGFDIIYVIPDIE  185 (286)
T ss_pred             HHHHHH------HHhCccccHHHHHHHHHhHHHH-----HHHHHcCCC--CchHHHHHHHHHHHHHHHHHHHHHHhcchh
Confidence            666764      7999999988766554432222     333444431  111233455667889999999999999999


Q ss_pred             hhHhcCCccchhhccHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHhhcCCCChHHH-HHH
Q 022643          197 GDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASI-LSF  275 (294)
Q Consensus       197 ~D~~~G~~Tlpv~~G~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~-~~f  275 (294)
                      +|+|.|+||+|+++|+|++.++...+..++.......|.... +   ..|.++..+.+.++.+|++.+|++|+++| .+|
T Consensus       186 ~D~~~Gv~S~a~~fG~~~~~~i~~~~~~~~~~~~~~~g~~~~-~---~~y~~~~~~~~~~l~~q~~~~~~~~~~~~~~~~  261 (286)
T PRK12895        186 YDKINGLKTIMNTYGIKNGLYISDIFHISSLILFWISGIYIR-T---LWYLAALIIIYTLVIYQHLIIDPRNPINKRMSF  261 (286)
T ss_pred             hHHHcCCCchHHHHCCccHHHHHHHHHHHHHHHHHHHHHHHh-h---HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence            999999999999999998887776666666666666665543 3   35568888999999999999999999999 666


Q ss_pred             HH-HHHHH
Q 022643          276 YM-FIWKL  282 (294)
Q Consensus       276 ~~-~~~~l  282 (294)
                      |. |.|.+
T Consensus       262 F~~N~~ig  269 (286)
T PRK12895        262 FNANSFIG  269 (286)
T ss_pred             HHHcCHHH
Confidence            65 44433

>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase

Probab=100.00  E-value=3.3e-34  Score=260.15  Aligned_cols=225  Identities=20%  Similarity=0.230  Sum_probs=174.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcccChhhhhhc--CCCCcccccccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 022643           37 GLMEALVPAVLMHIYVVAINQLSDVEVDKVN--KPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWI  114 (294)
Q Consensus        37 ~~l~~ll~~~l~~~a~~~iNd~~D~~~D~~n--~p~Rpi~sG~is~~~a~~~~~~~~~~~l~l~~~l~~~~~~~~~~~~~  114 (294)
                      ..+..+++.+++++++|++|||.|+|+|++|  +|+||+|+|++|+++++.++.++.+.++.++..+|+.+.... ..+.
T Consensus        37 ~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~~~~~~~~l~~~~~~l~-~~~~  115 (282)
T TIGR01475        37 TLILILIAAVSARTAAMAFNRIIDRAIDARNPRTKNRPLVSGLISKKEARTMIILSLALFLSASYFLNPLAFILS-PLVL  115 (282)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHH
Confidence            3556788999999999999999999999999  569999999999999999998888878888888887665444 3455


Q ss_pred             HHHHHhcCCccccccccCchhhHHHHHHHhhhHhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHHhhcCC
Q 022643          115 FVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHD  194 (294)
Q Consensus       115 ~l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~D  194 (294)
                      ++.+.|+.      +||++.++++..+...+..+..|     +.++.|..  +.....++.....++|+.+++++||+||
T Consensus       116 ~~~~~Y~~------~Kr~~~~~~~~~g~~~~~~~~~g-----~~a~~g~~--~~~~~~~ll~~~~~~w~~~~~~i~~~~D  182 (282)
T TIGR01475       116 LVLIIYPY------TKRFTFLCHYVLGSTYGLAPLAG-----WVAVIGTI--SFFLVAWLLGIGVGFWIAGFDLIYAIQD  182 (282)
T ss_pred             HHHHHHhh------HhccccccHHHHHHHHHHHHHHH-----HHHHhCCc--cchHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            56889984      79999889987766544333222     22333432  1113445556667889999999999999


Q ss_pred             hHhhHhcCCccchhhccHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHH
Q 022643          195 VDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILS  274 (294)
Q Consensus       195 ~e~D~~~G~~Tlpv~~G~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~~~  274 (294)
                      +|+|++.|+||+|+++|+|++++.......+++......+...+.++   .|..+..+....+.++.+..|.+|+++|++
T Consensus       183 ~e~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~---~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~  259 (282)
T TIGR01475       183 YEFDRKNGLHSIPARFGIKAALKIASLSHVITFILLLLVGFYVGNGY---IALLALILIGLILAYEHYIVDPGDQSKIQR  259 (282)
T ss_pred             HHhHHHcCCCchHHHhchHHHHHHHHHHHHHHHHHHHHHHHHhhCcH---HHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence            99999999999999999999999888877777776666676666555   444566666788889999999999888875


Q ss_pred             -HHHH
Q 022643          275 -FYMF  278 (294)
Q Consensus       275 -f~~~  278 (294)
                       ||.+
T Consensus       260 ~ff~~  264 (282)
T TIGR01475       260 AFFYA  264 (282)
T ss_pred             HHHHH
Confidence             6665

A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.

>PLN02809 4-hydroxybenzoate nonaprenyltransferase

Probab=100.00  E-value=2e-34  Score=261.46  Aligned_cols=221  Identities=19%  Similarity=0.189  Sum_probs=173.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhcccChhhhhhcCC--CCcccccccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 022643           38 LMEALVPAVLMHIYVVAINQLSDVEVDKVNKP--YLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIF  115 (294)
Q Consensus        38 ~l~~ll~~~l~~~a~~~iNd~~D~~~D~~n~p--~Rpi~sG~is~~~a~~~~~~~~~~~l~l~~~l~~~~~~~~~~~~~~  115 (294)
                      ++...++.+++++++|++||+.|+|+|++|+|  +||+|+|++|++||+.+..++.++++.+.+.+|+.+.... ..+.+
T Consensus        47 l~l~~~g~~~~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~~~l~-~~~~~  125 (289)
T PLN02809         47 LALFGCGALLLRGAGCTINDLLDRDIDKKVERTKLRPIASGALTPFQGVGFLGAQLLLGLGILLQLNNYSRILG-ASSLL  125 (289)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHhccccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHH
Confidence            45678899999999999999999999998864  9999999999999999999999999999988887766554 45666


Q ss_pred             HHHHhcCCccccccccCchhhHHHHHHHhhhHhHHHHHHHHHHHhhcCCccccchHHH-HHHHHHHHHHHHHHHHhhcCC
Q 022643          116 VGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLM-FATAFISCFCVVIAFIKDLHD  194 (294)
Q Consensus       116 l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~i~d~~D  194 (294)
                      +.+.||.      +||++.++++..+...+..+..     ++.++.|.    .+.... .++....+|+.++++++++||
T Consensus       126 ~~~~Y~~------~KR~t~~~~~~lg~~~~~~~l~-----g~~av~g~----~~~~~~~~l~~~~~~W~~~~d~~ya~~D  190 (289)
T PLN02809        126 LVFTYPL------MKRFTFWPQAFLGLTFNWGALL-----GWAAVKGS----LDPAVVLPLYASGVCWTLVYDTIYAHQD  190 (289)
T ss_pred             HHHHHhH------HHhcCcchHHHHHHHHHHHHHH-----HHHHHhCC----CChHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            6889984      7999988887765544332222     23344453    233333 255667889999999999999


Q ss_pred             hHhhHhcCCccchhhccHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHH
Q 022643          195 VDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILS  274 (294)
Q Consensus       195 ~e~D~~~G~~Tlpv~~G~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~~~  274 (294)
                      +|+|+|.|+||+|+++|+|+..++. .+..+++..+...|.....++   .|.+++.+.+..+.+|++.+|++|+++|.+
T Consensus       191 ~e~D~~~Gi~sl~v~~G~~~~~~i~-~~~~~~~~~l~~~g~~~~~~~---~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~  266 (289)
T PLN02809        191 KEDDLKVGVKSTALRFGDDTKLWLT-GFGAASIGGLALSGYNAGLGW---PYYAGLAAAAGHLAWQIQTVDLSSRADCNR  266 (289)
T ss_pred             hhhHHhCCCcccchhhcHHHHHHHH-HHHHHHHHHHHHHHHHhcCcH---HHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence            9999999999999999999555555 455566766667777766665   344688888999999999999999998966


Q ss_pred             HHHH
Q 022643          275 FYMF  278 (294)
Q Consensus       275 f~~~  278 (294)
                      .|+.
T Consensus       267 ~F~~  270 (289)
T PLN02809        267 KFVS  270 (289)
T ss_pred             HHHh
Confidence            6653

>PRK12876 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=3.4e-34  Score=259.11  Aligned_cols=227  Identities=14%  Similarity=0.123  Sum_probs=171.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccChhhhhhcCC--CCcccccccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 022643           35 FTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKP--YLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIA  112 (294)
Q Consensus        35 l~~~l~~ll~~~l~~~a~~~iNd~~D~~~D~~n~p--~Rpi~sG~is~~~a~~~~~~~~~~~l~l~~~l~~~~~~~~~~~  112 (294)
                      +..++...++++.+|+++|++||+.|+|+|++|+|  +||+|+|++|++||+.+...+.++++.+...+|+.+...+ ..
T Consensus        46 ~~~~~~~~~a~~~~Rsag~~~Nd~~DrdiD~~~~RT~~RPLpsG~is~~~A~~~~~~~~~~~~~l~~~ln~l~~~l~-~~  124 (300)
T PRK12876         46 IKTISLGGSAFFCARTVGIIVNQIIDCAIDKKNPRTSSRVLPAKLLSINFSMLLLTLCSFLFLSLCWLLNPLCFSLA-VL  124 (300)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHhcccCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HH
Confidence            44456678899999999999999999999999996  9999999999999999998877888888888998777655 45


Q ss_pred             HHHHHHHhcCCccccccccCchhhHHHHHHHhhhHhHHHHHHHHHHHhhcCCccccch----HHHHHHHHHHHHHHHHHH
Q 022643          113 WIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTR----PLMFATAFISCFCVVIAF  188 (294)
Q Consensus       113 ~~~l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~~~~~g~~~~~~~~----~~~~~~~~~~~~~~~~~~  188 (294)
                      +.++.+.||.      +||+++++++..+...+..+..     ++.++.+++   .++    ..+++.....+|..++|+
T Consensus       125 ~~~~~~iY~~------~KR~t~~~~~vLGl~~~~~~l~-----~~~Av~~~~---~~~~l~~~~~lw~~~~~~~~~g~Di  190 (300)
T PRK12876        125 STLLMIIYPY------TKRVTFLCHWILGLVYYLAILM-----NFFAIIETP---LSFSLFCMASLWGISFGMIIAANDI  190 (300)
T ss_pred             HHHHHHHHHh------HhcCCchhHHHHHHHHHHHHHH-----HHHHHhcCc---ccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5666789984      8999999997765543322222     223344432   222    122333445677779999


Q ss_pred             HhhcCChHhhHhcCCccchhhccHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHH--HHHHHhhcCC
Q 022643          189 IKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASI--FWLRVRAVDL  266 (294)
Q Consensus       189 i~d~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~d~  266 (294)
                      +|++||+|+|++.|+||+|+++|+|++.++......++...+...|.....++  .+|..+..+.+..  +.+|.+.+|.
T Consensus       191 iYa~qD~e~D~~~Gl~Slpv~fG~~~a~~ia~~~~~l~~~~l~~~g~~~~l~~--~~y~~~~~~~~~~l~~~~~~~~~~~  268 (300)
T PRK12876        191 IYAIQDLEFDRKEGLFSIPARFGEKKAIRIASANLIASAIAYLLIGYFVSNKK--IFYLCSLVPLTVILKTIKHYSLIDK  268 (300)
T ss_pred             HHHHcCHhhHHHcCCccchHHHCchhHHHHHHHHHHHHHHHHHHHHHHhhccH--HHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            99999999999999999999999998877777777677776777787777665  3455555433333  3555577888


Q ss_pred             CChHHHHHHHHH
Q 022643          267 SDNASILSFYMF  278 (294)
Q Consensus       267 ~~~~~~~~f~~~  278 (294)
                      ++++.|++||..
T Consensus       269 ~~~~~~~~~F~~  280 (300)
T PRK12876        269 KKSTLEQKFFLG  280 (300)
T ss_pred             CchHHHHHHHHh
Confidence            889999998875

>PRK13106 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=3.3e-34  Score=260.93  Aligned_cols=228  Identities=16%  Similarity=0.193  Sum_probs=173.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcccChhhhhhcCC--CCcccccccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 022643           37 GLMEALVPAVLMHIYVVAINQLSDVEVDKVNKP--YLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWI  114 (294)
Q Consensus        37 ~~l~~ll~~~l~~~a~~~iNd~~D~~~D~~n~p--~Rpi~sG~is~~~a~~~~~~~~~~~l~l~~~l~~~~~~~~~~~~~  114 (294)
                      .++..+++.+++++++|++||++|+|+|++|+|  +||+|+|++|++|++.+..++.+.++.++..+|+.+.... ..+.
T Consensus        50 ~l~l~~lg~~l~~~a~~~~Nd~~D~diD~~~~RT~~RPl~sG~is~~~A~~~~~~~~~~~~~~~~~ln~~~~~l~-~~~~  128 (300)
T PRK13106         50 TLILIFLALFFLRTAGMTNDNLADLEIDAKNPRTKNRPLVTGAIKISEAKALITAGLILFFASAYLVNRWALLLS-PIVA  128 (300)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHhccccCCCccCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHH
Confidence            345678899999999999999999999999964  8999999999999999887777777777777887766554 3445


Q ss_pred             HHHHHhcCCccccccccCchhhHHHHHHHhhhHhHHHHHHHHHHHhhcCCcc----ccchHHHHHHHHHHHHHHHHHHHh
Q 022643          115 FVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLE----IFTRPLMFATAFISCFCVVIAFIK  190 (294)
Q Consensus       115 ~l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~~~~~g~~~~----~~~~~~~~~~~~~~~~~~~~~~i~  190 (294)
                      ++...||.      .||++.++++..+...+..+..|+     .++.|....    ..+...++++....+|+.++|++|
T Consensus       129 ~~~~~Y~~------~KR~t~~~~~~lg~~~~~~~~~G~-----~a~~g~~~~~~~~~l~~~~~~l~~~~~lw~~~~d~iy  197 (300)
T PRK13106        129 LIAMSYPY------MKRYTAFANYHLASIQGLAVFSGA-----VAVLGLYANSLIQVLLRVPWLFVIGTILWAAGFDLYN  197 (300)
T ss_pred             HHHHHHhH------HhcCCcchHHHHHHHHHHHHHHHH-----HHHcCCcccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            55778984      799999999887765554333332     233342200    011223444556788999999999


Q ss_pred             hcCChHhhHhcCCccchhhccHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHhhcCCCChH
Q 022643          191 DLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNA  270 (294)
Q Consensus       191 d~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~~  270 (294)
                      ++||+|+|+|.|+||+|+++| |+++++...+..++..+....+....+++   .|..+..+...++.+|++.++.+ ++
T Consensus       198 a~~D~e~D~~~Gi~Slpv~~G-~~a~~~~~~~~~~~v~l~~~~~~~~~lg~---~y~~~~~~~~~~l~~~~~~~~~~-~~  272 (300)
T PRK13106        198 HIPDAEFDREMGLHSFAVVLG-KWALTFAGLNQLFSVVLDLLGDLYYGLGP---IAIAATILHGLIMAYAYYLASKK-GD  272 (300)
T ss_pred             HccchhhHHHCCCCccHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHhCCcH---HHHHHHHHHHHHHHHHHHHhCCc-hH
Confidence            999999999999999999999 77888888877777777777777766665   45567778899999999999887 45


Q ss_pred             HHHHHHHHHHH
Q 022643          271 SILSFYMFIWK  281 (294)
Q Consensus       271 ~~~~f~~~~~~  281 (294)
                      +.++|..|.|.
T Consensus       273 ~~~~F~~n~~i  283 (300)
T PRK13106        273 FGRAFYYNIYS  283 (300)
T ss_pred             HHHHHHHccHH
Confidence            55666555443

>PRK12874 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=1.1e-33  Score=257.05  Aligned_cols=226  Identities=20%  Similarity=0.197  Sum_probs=175.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcccChhhhhhcCC--CCcccccccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 022643           36 TGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKP--YLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAW  113 (294)
Q Consensus        36 ~~~l~~ll~~~l~~~a~~~iNd~~D~~~D~~n~p--~Rpi~sG~is~~~a~~~~~~~~~~~l~l~~~l~~~~~~~~~~~~  113 (294)
                      ..++.++++.+++++++|++|||.|+|+|++|+|  +||+|+|++|++|++.++..+.++++.+++.+|+.+.... +..
T Consensus        47 ~~~~l~~l~~~l~~~a~~~~Nd~~DrdiD~~~~RT~~RPl~sG~is~~~a~~~~~~~~~~~~~~~~~~n~~~~~l~-~~~  125 (291)
T PRK12874         47 KLLILGILAAVSARNFAMAFNRLVDRDIDKDNPRTANRPSVDGRISVKSMVLFIVLNALIFIGVSYFINPLAFKLS-FPF  125 (291)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHH
Confidence            3456678899999999999999999999999985  8999999999999999998888888888888888766554 456


Q ss_pred             HHHHHHhcCCccccccccCchhhHHHHHHHhhhHhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHHhhcC
Q 022643          114 IFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLH  193 (294)
Q Consensus       114 ~~l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~  193 (294)
                      ++....||.      +||++.++++.+++.++..+..|     +.++.|.    .+.+.+++.....+|+.+++++|++|
T Consensus       126 ~~~~~~Y~~------~KR~t~~~~~~~g~~~~~~~l~G-----~~av~g~----~~~~~~~l~~~~~~w~~~~~~~~a~~  190 (291)
T PRK12874        126 LIVLGGYSY------FKRFSSLAHLVLGLSLGLAPIAG-----VVAVLGE----IPLWSVFLALGVMFWVAGFDLLYSLQ  190 (291)
T ss_pred             HHHHHHHhh------hcccccccHHHHHHHHHHHHHHH-----HHHHcCC----CcHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            666889995      79999889988776655444333     3344443    34444555566789999999999999


Q ss_pred             ChHhhHhcCCccchhhccHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHH
Q 022643          194 DVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASIL  273 (294)
Q Consensus       194 D~e~D~~~G~~Tlpv~~G~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~~  273 (294)
                      |+|+|++.|+||+|+++|+|++++................+......+   ++.++..+.+..+.++.+..+.+|++.|+
T Consensus       191 D~~~D~~~Gi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  267 (291)
T PRK12874        191 DMEFDKKRGLHSIPSKFGEKATLFISRLFHLLAVLFWLLFVWCAHLGL---FAYLGVIVSALILLYEHYLVRKDFKKIDK  267 (291)
T ss_pred             cHHHHHHcCCCcccHHhhhHhHHHHHHHHHHHHHHHHHHHHHHhcchH---HHHHHHHHHHHHHHHHHHHhcCCChHHHH
Confidence            999999999999999999999988776655444444444444433333   45567777788888998888877777888


Q ss_pred             HHHHHHH
Q 022643          274 SFYMFIW  280 (294)
Q Consensus       274 ~f~~~~~  280 (294)
                      .||.++.
T Consensus       268 ~ff~sn~  274 (291)
T PRK12874        268 AFFTLNG  274 (291)
T ss_pred             HHHHHHH
Confidence            9877633

>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=100.00  E-value=6.9e-34  Score=258.54  Aligned_cols=226  Identities=16%  Similarity=0.199  Sum_probs=173.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcccChhhhhhcCC--CCcccccccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 022643           37 GLMEALVPAVLMHIYVVAINQLSDVEVDKVNKP--YLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWI  114 (294)
Q Consensus        37 ~~l~~ll~~~l~~~a~~~iNd~~D~~~D~~n~p--~Rpi~sG~is~~~a~~~~~~~~~~~l~l~~~l~~~~~~~~~~~~~  114 (294)
                      ..+.++++.+++++++|++||++|+|+|++|+|  +||+|+|++|++|+..++.++.++++.++..+|+.+.... +.+.
T Consensus        47 ~~~l~~lg~~~~~~a~~~~Nd~~D~~iD~~~~Rt~~RPL~sG~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~l~-~~~~  125 (290)
T PRK12870         47 LVGIIILGALATSAAGCVVNDLWDRDIDPQVERTRFRPLASRRLSVKVGIVIAIVALLCAAGLAFFLNPLSFWLC-VAAV  125 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHH
Confidence            345677899999999999999999999987664  8999999999999999999999999999988897766544 4556


Q ss_pred             HHHHHhcCCccccccccCchhhHHHHHHHhhhHhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHHhhcCC
Q 022643          115 FVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHD  194 (294)
Q Consensus       115 ~l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~D  194 (294)
                      ++.+.||.      .||++.++++..+..++..+..     ++.+..|.    .+...+++....++|+.+++++|++||
T Consensus       126 ~~~~~Y~~------~KR~t~~~~~~lg~~~~~~~l~-----g~~a~~g~----~~~~~~~l~~~~~lw~~~~d~~~a~~D  190 (290)
T PRK12870        126 PVIFLYPL------AKRVFPVPQLVLAIAWGFAVLI-----SWSAVTGH----LDLGTWLLWAATVFWTLGFDTVYAMSD  190 (290)
T ss_pred             HHHHHhhh------hhhccccceeeehHHHHhHHHH-----HHHHHcCC----CCHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            66889984      6888877887665554432222     22233343    345555666678899999999999999


Q ss_pred             hHhhHhcCCccchhhccHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHhhc--CCCChHHH
Q 022643          195 VDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAV--DLSDNASI  272 (294)
Q Consensus       195 ~e~D~~~G~~Tlpv~~G~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--d~~~~~~~  272 (294)
                      +|+|+|+|+||+|+++|+|++.++.. +..++...+...++....++   .|..+..+....+.+|+..+  |.+|+++|
T Consensus       191 ~e~D~~~G~~slav~~G~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~---~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~  266 (290)
T PRK12870        191 REDDLRIGVNSSAIFFGRYAPEAIGL-FFALTVGFLAILGVLLELHL---PFWIGLAIAAVLWARQYRRLRQANLPPLAY  266 (290)
T ss_pred             HhhHHHCCCcchhHHhccccHHHHHH-HHHHHHHHHHHHHHHhCCcH---HHHHHHHHHHHHHHHHHHHhcccCCChHHH
Confidence            99999999999999999998877665 34445555556677666554   34467778889999999888  77788888


Q ss_pred             HHHHH-HHHHH
Q 022643          273 LSFYM-FIWKL  282 (294)
Q Consensus       273 ~~f~~-~~~~l  282 (294)
                      ++||. |.|.+
T Consensus       267 ~~~F~~n~~~g  277 (290)
T PRK12870        267 GQLFLQNVWIG  277 (290)
T ss_pred             HHHHHHhhHHH
Confidence            77776 44444

>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

Probab=100.00  E-value=4.2e-33  Score=253.75  Aligned_cols=236  Identities=23%  Similarity=0.341  Sum_probs=190.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccChhhhhhcCC--CCcccccccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 022643           35 FTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKP--YLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIA  112 (294)
Q Consensus        35 l~~~l~~ll~~~l~~~a~~~iNd~~D~~~D~~n~p--~Rpi~sG~is~~~a~~~~~~~~~~~l~l~~~l~~~~~~~~~~~  112 (294)
                      +...+.+.++++++++++|++||+.|+|+||+|+|  +||+|+|++|+++++.+..++.++++.+++.+|++++... +.
T Consensus        46 ~~~~~l~~l~~~~~~~ag~~iND~~D~eiD~~n~rt~~RPl~sG~vS~~~a~~~~~~~~~~~~~~a~~l~~~~~~l~-~~  124 (289)
T COG0382          46 LKLLLLAFLAFFLARSAGYVINDLADREIDRINPRTKNRPLPSGRVSVKEALLLAILLLLLGLALALLLNPLAFLLS-LA  124 (289)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHhhhhccCCCCCccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HH
Confidence            55667788899999999999999999999999999  9999999999999999999999999999999998775544 67


Q ss_pred             HHHHHHHhcCCccccccccCchhhHHHHHHHhhhHhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHHhhc
Q 022643          113 WIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDL  192 (294)
Q Consensus       113 ~~~l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~  192 (294)
                      +.++.+.|+      ++||.+.+++.+.+...+.....|     ..+..|.    .+...+++.....+|+.+++++||+
T Consensus       125 ~~~l~~~Y~------~~Kr~~~~~~~~lg~~~~~~~~~g-----~~a~~~~----~~~~~~~l~~~~~l~~~~~~~i~~~  189 (289)
T COG0382         125 ALVLALAYP------FLKRFTFLPQLVLGLAFGLGALAG-----AAAVGGS----LPLLAWLLLLAAILWTLGYDIIYAI  189 (289)
T ss_pred             HHHHHHHHH------HhhcCCchHHHHHHHHHHHHHHHH-----HHHHhCc----cchHHHHHHHHHHHHHHHHHHHHhc
Confidence            788899996      489999999998876655433322     2233332    2445566777788999999999999


Q ss_pred             CChHhhHhcCCccchhhccHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHhhcCCCChHHH
Q 022643          193 HDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASI  272 (294)
Q Consensus       193 ~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~  272 (294)
                      +|+|+|++.|+||+|+.+|+|++..+..... .....+..++.......  ..+..+..+....+.+|...+|.+|++.|
T Consensus       190 ~D~e~D~~~G~~s~~~~~G~~~a~~l~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (289)
T COG0382         190 QDIEGDRKAGLKSLPVLFGIKKALALALLLL-LASALLVLLGLLAGLLG--LIYLLGLLVAALLLLYQILIVDVRDPPAC  266 (289)
T ss_pred             cCccchHhcCCcchHHHhCchhHHHHHHHHH-HHHHHHHHHHHHHhhch--HHHHHHHHHHHHHHHHHHHHhcccChHHH
Confidence            9999999999999999999999999888766 44444555555544332  35667788888999999999999899999


Q ss_pred             HHHHHHHHHHHHHHHhh
Q 022643          273 LSFYMFIWKLYYAEYLL  289 (294)
Q Consensus       273 ~~f~~~~~~l~~~~y~~  289 (294)
                      +++|......-...++.
T Consensus       267 ~~~~~~~~~~~~~~~~~  283 (289)
T COG0382         267 FALFDVNLLLGLLLFIG  283 (289)
T ss_pred             HHHHHHhhHHHHHHHHH
Confidence            99988766555544443

>PRK12886 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=1.1e-32  Score=250.62  Aligned_cols=227  Identities=18%  Similarity=0.151  Sum_probs=171.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcccChhhhhhcCC--CCcccccccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 022643           37 GLMEALVPAVLMHIYVVAINQLSDVEVDKVNKP--YLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWI  114 (294)
Q Consensus        37 ~~l~~ll~~~l~~~a~~~iNd~~D~~~D~~n~p--~Rpi~sG~is~~~a~~~~~~~~~~~l~l~~~l~~~~~~~~~~~~~  114 (294)
                      .+....++.+++++++|++|||+|+|+|++|+|  +||+++|++|++||..+...+.+.++.+....|+++..+. +.+.
T Consensus        43 ~l~~~~l~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPL~sG~is~~~A~~~~~~~~~~~~~l~~~~~~~~~~l~-~~~~  121 (291)
T PRK12886         43 QLDWILMAMVGARTAAMGFNRLIDAEIDARNPRTAGRAIPAGLISKGSAILFIVLSSLLMLFAAWFLNPLCLYLS-PPAL  121 (291)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence            345667899999999999999999999999985  8999999999999998876666666666677887766554 3455


Q ss_pred             HHHHHhcCCccccccccCchhhHHHHHHHhhhHhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHHhhcCC
Q 022643          115 FVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHD  194 (294)
Q Consensus       115 ~l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~D  194 (294)
                      +....||.      +||++.++++..+..++..+..     ++.+..|.    .+...+++.....+|+.+++++++++|
T Consensus       122 ~~~~~Y~~------~Kr~t~~~~~~~g~~~~~~~l~-----g~~a~~g~----~~~~~~ll~~~~~lw~~~~~~~~a~~D  186 (291)
T PRK12886        122 FFLLLYSY------CKRFTALAHVVLGFCLALAPLG-----AWIAIRGT----IELPAILLGLAVLFWVAGFDILYALQD  186 (291)
T ss_pred             HHHHHHhh------hhccccccHHHHHHHHHHHHHH-----HHHHHcCC----CcHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            56889994      6999988888776654433322     22233342    355556666677899999999999999


Q ss_pred             hHhhHhcCCccchhhccHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHhhcCCCCh-HHHH
Q 022643          195 VDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDN-ASIL  273 (294)
Q Consensus       195 ~e~D~~~G~~Tlpv~~G~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~-~~~~  273 (294)
                      +|+|+|+|+||+|+++|+|+++++......+.+......+.....++   .|.++..+....+.++.+..+.+|+ +.|+
T Consensus       187 ~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~  263 (291)
T PRK12886        187 LEFDRKEGLHSIPAKLGVNGSLWIARVFHLLMIGFLFALGISAGLGP---WFLAGLAVTGILLLYEHWLLRGGDLTRLDA  263 (291)
T ss_pred             HHhHHHcCCcCcchhcCchhHHHHHHHHHHHHHHHHHHHHHHhcCcH---HHHHHHHHHHHHHHHHHHHhCCCChhHHHH
Confidence            99999999999999999999998876666566665555555555444   4455666777777788888888874 5676


Q ss_pred             H-HHHHHHHH
Q 022643          274 S-FYMFIWKL  282 (294)
Q Consensus       274 ~-f~~~~~~l  282 (294)
                      + |..++|.+
T Consensus       264 ~~F~~~~~~~  273 (291)
T PRK12886        264 AFFNMNGYIS  273 (291)
T ss_pred             HHHHHhHHHH
Confidence            6 55566655

>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed

Probab=100.00  E-value=8.8e-33  Score=250.68  Aligned_cols=225  Identities=16%  Similarity=0.159  Sum_probs=170.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhcccChhhhhhcCC--CCcccccccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 022643           38 LMEALVPAVLMHIYVVAINQLSDVEVDKVNKP--YLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIF  115 (294)
Q Consensus        38 ~l~~ll~~~l~~~a~~~iNd~~D~~~D~~n~p--~Rpi~sG~is~~~a~~~~~~~~~~~l~l~~~l~~~~~~~~~~~~~~  115 (294)
                      .+..+++.+++++++|++||++|+|+|++|+|  +||+|+|++|++|++.++.++..+++.+++.+|+.+.... +.+.+
T Consensus        44 ~~l~~~g~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~-~~~~~  122 (282)
T PRK12848         44 LVVFVLGVFLMRAAGCVINDYADRDFDGHVKRTKNRPLASGAVSEKEALALFVVLVLVAFLLVLTLNTLTIWLS-VAALA  122 (282)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHhccCCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHH
Confidence            45567888999999999999999999997764  8999999999999999999999999988888887666544 45566


Q ss_pred             HHHHhcCCccccccccCchhhHHHHHHHhhhHhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHHhhcCCh
Q 022643          116 VGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDV  195 (294)
Q Consensus       116 l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~D~  195 (294)
                      ..+.|+.      .||++.++++..++..|..+..++     .+..|    ..+...+++.....+|+...++++++||+
T Consensus       123 ~~~~Y~~------~Kr~~~~~~~~~g~~~g~~~~~g~-----~a~~~----~~~~~~~~l~~~~~~w~~~~~~~~a~~D~  187 (282)
T PRK12848        123 LAWIYPF------MKRYTHLPQVVLGAAFGWGIPMAF-----AAVQG----SVPLEAWLLFLANILWTVAYDTQYAMVDR  187 (282)
T ss_pred             HHHHHHh------HHhcCcccHHHHHHHHHHHHHHHH-----HHHhC----CCcHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence            6889973      688887788776655553332222     22233    23555666667788999999999999999


Q ss_pred             HhhHhcCCccchhhccHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHH
Q 022643          196 DGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSF  275 (294)
Q Consensus       196 e~D~~~G~~Tlpv~~G~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~~~f  275 (294)
                      |+|+++|+||+|+++|+|++.+.... ..+....+...++....++   .|.++..+....+.++++.+|.+|+++|+++
T Consensus       188 e~D~~~G~~tlpv~~G~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (282)
T PRK12848        188 DDDLKIGIKSTAILFGRYDKLIIGLL-QLATLALLAWAGWLLGLGW---AYYWGLLVAAALFVYQQKLIRDREREACFKA  263 (282)
T ss_pred             hhHHHcCCccccHHhccccHHHHHHH-HHHHHHHHHHHHHHhcCcH---HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence            99999999999999999988777643 3344444444555544443   4557777889999999999999888877555


Q ss_pred             H-HHHHHH
Q 022643          276 Y-MFIWKL  282 (294)
Q Consensus       276 ~-~~~~~l  282 (294)
                      | .+.|.+
T Consensus       264 F~~n~~~g  271 (282)
T PRK12848        264 FLNNNWVG  271 (282)
T ss_pred             HHhCcHHH
Confidence            5 445544

>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial

Probab=100.00  E-value=1.8e-32  Score=248.53  Aligned_cols=226  Identities=17%  Similarity=0.180  Sum_probs=169.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhcccChhhhhhcCC--CCcccccccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 022643           38 LMEALVPAVLMHIYVVAINQLSDVEVDKVNKP--YLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIF  115 (294)
Q Consensus        38 ~l~~ll~~~l~~~a~~~iNd~~D~~~D~~n~p--~Rpi~sG~is~~~a~~~~~~~~~~~l~l~~~l~~~~~~~~~~~~~~  115 (294)
                      .+..+++.+++++++|++|||+|+|.|++|+|  +||+|+|++|++|++.++.++.++++.+++.+|+.+.... +.+.+
T Consensus        42 ~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~l~-~~~~~  120 (281)
T TIGR01474        42 LGLFTVGAILMRGAGCVINDIWDRDFDPQVERTKSRPLASGAVSVRQAILFLLVQLLVALGVLLQLNPLTILLG-VASLA  120 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHhhhcccccCCcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHH
Confidence            45567788999999999999999999997764  8999999999999999999999999999888887766544 56677


Q ss_pred             HHHHhcCCccccccccCchhhHHHHHHHhhhHhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHHhhcCCh
Q 022643          116 VGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDV  195 (294)
Q Consensus       116 l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~D~  195 (294)
                      +.+.||.      .||++.++++..++..+..+..|+     .++.|.    .+...+++.....+|+.+++++|++||+
T Consensus       121 ~~~~Y~~------~Kr~~~~~~~~~g~~~~~~~~~g~-----~a~~g~----~~~~~~ll~~~~~lw~~~~~~~~a~~D~  185 (281)
T TIGR01474       121 LVATYPF------MKRITYWPQLVLGLAFGWGALMGW-----AAVTGD----LSTAAWVLYLANILWTLGYDTIYAMQDK  185 (281)
T ss_pred             HHHHhch------hcccccccHHHHHHHHHHHHHHHH-----HHHcCC----CcHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence            7999984      799988888776654443333332     233443    3455555556678899999999999999


Q ss_pred             HhhHhcCCccchhhccHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHH
Q 022643          196 DGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSF  275 (294)
Q Consensus       196 e~D~~~G~~Tlpv~~G~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~~~f  275 (294)
                      |+|+|+|+||+|+++|+|++++.... ..++.....+.+.....++   .|.++..+....+.++...+|.+|+++|+++
T Consensus       186 e~D~~~G~~tlpv~~G~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (281)
T TIGR01474       186 EDDIKIGVKSTALRFGDNTKPWLGGL-YALMILLLALAGLIAGLGP---VYYLGLAAAALLLIRQIATLDIRDPENCLKL  261 (281)
T ss_pred             HhHHHcCCCcccHHhhhhhHHHHHHH-HHHHHHHHHHHHHHhCCcH---HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            99999999999999999986555443 3333333344444444444   4446777888899999999888888877766


Q ss_pred             HH-HHHHHH
Q 022643          276 YM-FIWKLY  283 (294)
Q Consensus       276 ~~-~~~~l~  283 (294)
                      |. +.+.+.
T Consensus       262 F~~~~~~~~  270 (281)
T TIGR01474       262 FKANNYVGL  270 (281)
T ss_pred             HHHhhHHHH
Confidence            65 444443

A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.

>PRK12882 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=8.9e-33  Score=250.08  Aligned_cols=227  Identities=20%  Similarity=0.224  Sum_probs=163.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhcccChhhhhhcCCCCcccccccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 022643           38 LMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVG  117 (294)
Q Consensus        38 ~l~~ll~~~l~~~a~~~iNd~~D~~~D~~n~p~Rpi~sG~is~~~a~~~~~~~~~~~l~l~~~l~~~~~~~~~~~~~~l~  117 (294)
                      .+..+++.+++++++|++||++|+|+|++|+|+||+++|++|++|++.++.++.++++.+++.+|+...... ..+.++.
T Consensus        40 ~~l~~l~~~l~~~~~~~~Nd~~D~~iD~~~~~~Rpl~~G~is~~~a~~~~~~l~~~g~~~~~~l~~~~~~~~-~~~~~~~  118 (276)
T PRK12882         40 TGLAFAAVFLATGAGNAINDYFDREIDRINRPDRPIPSGAVSPRGALAFSILLFAAGVALAFLLPPLCLAIA-LFNSLLL  118 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCcCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHH
Confidence            456788999999999999999999999999999999999999999999999999999999988887665444 4556668


Q ss_pred             HHhcCCccccccccCchhhHHHHHHHhhhHhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHHhhcCChHh
Q 022643          118 TAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDG  197 (294)
Q Consensus       118 ~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~D~e~  197 (294)
                      +.|+.     |+||++.++|+.++...|.....|     . +..+..   .....+......++|+.+++++||+||+|+
T Consensus       119 ~~Yt~-----~lK~~~~~g~~~vg~~~g~~~~~g-----~-~~~~~~---~~~~~~~l~~~~fl~~~~~~~~~~~~D~e~  184 (276)
T PRK12882        119 VLYAE-----TLKGTPGLGNASVAYLTGSTFLFG-----G-AAVGTE---GLLALLVLFALAALATLAREIIKDVEDIEG  184 (276)
T ss_pred             HHHHH-----HHhcccchhHHHHHHHHHHHHHHH-----H-HHhccc---chHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence            89984     689999888887765444332222     1 122321   122333444555677889999999999999


Q ss_pred             hHhcCCccchhhccHHHHHHHHHHHHHHHHHHHHHHHh-hcchhhHHHHHHHHHHHH-HHHHHHHHhhcCCCChHHHHHH
Q 022643          198 DKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGA-SSPFLANKLITIIGHGIL-ASIFWLRVRAVDLSDNASILSF  275 (294)
Q Consensus       198 D~~~G~~Tlpv~~G~~~a~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~d~~~~~~~~~f  275 (294)
                      |+++|+||+|+++|+|+++++......+..... ..++ ....++   .|.....+. ...+.++.+..|.+|++.|+++
T Consensus       185 D~~~G~~tlpv~~G~~~t~~~~~~~~~~~~~~~-~~~~~~~~~~~---~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  260 (276)
T PRK12882        185 DRAEGARTLPILIGVRKALYVAAAFLLVAVAAS-PLPYLLSTFGL---WYLVLVAPADLVMLAAAYRSLKKTDPTASQKL  260 (276)
T ss_pred             HHHcCCccccHHhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence            999999999999999999988776654443322 2222 222333   333444344 4444456677788888877665


Q ss_pred             HH-HHHHHH
Q 022643          276 YM-FIWKLY  283 (294)
Q Consensus       276 ~~-~~~~l~  283 (294)
                      |. ++|-+.
T Consensus       261 f~~~~~~g~  269 (276)
T PRK12882        261 LKYGMFLAL  269 (276)
T ss_pred             HHHHHHHHH
Confidence            54 455443

>PRK12873 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=6.6e-33  Score=250.74  Aligned_cols=230  Identities=15%  Similarity=0.026  Sum_probs=176.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcccChhhhhhcCC--CCcccccccCHHHHHHHHHHHHHHHHHHHHHh----hhHHHHHHH
Q 022643           37 GLMEALVPAVLMHIYVVAINQLSDVEVDKVNKP--YLPLASGEISMGTGIAITLASALMSLAYAVMI----RSPPFIWAV  110 (294)
Q Consensus        37 ~~l~~ll~~~l~~~a~~~iNd~~D~~~D~~n~p--~Rpi~sG~is~~~a~~~~~~~~~~~l~l~~~l----~~~~~~~~~  110 (294)
                      ..+.++++..++++++|++||+.|+|+|++|+|  +||+|+|++|++||+.+..++.++++.+.+.+    |+.+..++ 
T Consensus        45 ~~~~~~~g~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPl~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~n~l~~~l~-  123 (294)
T PRK12873         45 LLLLIILGGLAVSGAGCIANDLWDRRIDRKVERTKNRPLARGKISLKTAYSLLIVLLLLSLFVVLSLPQPSRNLCLSLA-  123 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHH-
Confidence            456788999999999999999999999999886  99999999999999999999999988887665    44555444 


Q ss_pred             HHHHHHHHHhcCCccccccccCchhhHHHHHHHhhhHhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHHh
Q 022643          111 IAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIK  190 (294)
Q Consensus       111 ~~~~~l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~  190 (294)
                      ..+++....||.      +||++.+.++..++..+..+..     ++.++.|+.  +.....++++...++|+.++|+++
T Consensus       124 ~~~~~~~~~Y~~------~KR~t~~~~~vlg~~~a~~~l~-----gw~Av~g~~--~~~~~~l~l~~~~~~W~~~~d~iy  190 (294)
T PRK12873        124 FLALPPILIYPS------AKRWFAYPQAILALCWGFAVLI-----PWAAAEGSL--NGGWPLLFCWLATLLWTFGFDTVY  190 (294)
T ss_pred             HHHHHHHHHHHH------HHhccccchHHHHHHHHhHHHH-----HHHHHhCCC--chhHHHHHHHHHHHHHHHHHHHHH
Confidence            455556889984      7999888887766554433322     233455542  111233444467889999999999


Q ss_pred             hcCChHhhHhcCCccchhhccHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHhhcCCCC--
Q 022643          191 DLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSD--  268 (294)
Q Consensus       191 d~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~--  268 (294)
                      ++||+|+|+|.|+||+|+++|++ +++....+..++...+...|....+++   .|.++..+.+..+.+|++.+|++|  
T Consensus       191 A~qD~edD~~~Gv~slpv~~G~~-~~~~~~~~~~~~~~ll~~~g~~~~l~~---~y~~~~~~~~~~l~~~~~~~~~~~~~  266 (294)
T PRK12873        191 AMADRRDDAKIGLNSSALSLGSN-ALKTVQICYFLTSIFLALAAFIAQVGF---IFWPFWLIASIGMQRDILKLFPEKQS  266 (294)
T ss_pred             HHHhHhhHHHcCCcccchhcChh-hHHHHHHHHHHHHHHHHHHHHHhCCcH---HHHHHHHHHHHHHHHHHHHhCcCccc
Confidence            99999999999999999999975 555556666677777778888877776   455777888899999999999987  


Q ss_pred             hHHH-HHHHHHHHHHHH
Q 022643          269 NASI-LSFYMFIWKLYY  284 (294)
Q Consensus       269 ~~~~-~~f~~~~~~l~~  284 (294)
                      +++| +.|..|.|.+..
T Consensus       267 ~~~c~~~F~~n~~~G~~  283 (294)
T PRK12873        267 IKTIGNHFSNQVILGSL  283 (294)
T ss_pred             HHHHHHHHHhccHHHHH
Confidence            4777 555556666553

>PRK12884 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=4.6e-32  Score=245.83  Aligned_cols=227  Identities=20%  Similarity=0.279  Sum_probs=168.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcccChhhhhhcCCCCcccccccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 022643           37 GLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFV  116 (294)
Q Consensus        37 ~~l~~ll~~~l~~~a~~~iNd~~D~~~D~~n~p~Rpi~sG~is~~~a~~~~~~~~~~~l~l~~~l~~~~~~~~~~~~~~l  116 (294)
                      ..+...++.+++++++|++||++|+|+|++|+|+||+++|++|+++++..+.++.++++.++..+|+...... +.+.++
T Consensus        38 ~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~r~~Rpl~~G~is~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~  116 (279)
T PRK12884         38 EALLGFLTAFFASGSANALNDYFDYEVDRINRPDRPIPSGRISRREALLLAILLFILGLIAAYLISPLAFLVV-ILVSVL  116 (279)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHH
Confidence            3456678999999999999999999999999999999999999999999999999999999888887665444 566677


Q ss_pred             HHHhcCCccccccccCchhhHHHHHHHhhhHhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHHhhcCChH
Q 022643          117 GTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVD  196 (294)
Q Consensus       117 ~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~D~e  196 (294)
                      ++.||.     ++||+++.+++.++..++.....+     +.+. +..    +...+++....++|+.++++++|++|+|
T Consensus       117 ~~~Ys~-----~lK~~~~~~~~~~~~~~~~~~~~g-----~~~~-~~~----~~~~~~l~~~~~~~~~~~~~~~~~~D~e  181 (279)
T PRK12884        117 GILYNW-----KLKEYGLIGNLYVAFLTGMTFIFG-----GIAV-GEL----NEAVILLAAMAFLMTLGREIMKDIEDVE  181 (279)
T ss_pred             HHHHHH-----hhccccchhHHHHHHHHHHHHHHH-----HHHh-CCC----chHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            899995     479999888888776655333222     2222 221    2234444456678888999999999999


Q ss_pred             hhHhcCCccchhhccHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHH-hhcCCCChHHHHHH
Q 022643          197 GDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRV-RAVDLSDNASILSF  275 (294)
Q Consensus       197 ~D~~~G~~Tlpv~~G~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~d~~~~~~~~~f  275 (294)
                      +|++.|+||+|+++|+|+++++........++...........++   .|.....+....+.++. +..+.+|+++++++
T Consensus       182 ~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  258 (279)
T PRK12884        182 GDRLRGARTLAILYGEKIAGRIAAALFILAVLLSPLPYLFGIFNI---LYLAPVLVADLIFLYSAYSLLRSQDRETIRKV  258 (279)
T ss_pred             hHHHcCCeeechHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence            999999999999999999999887766555554333333322333   44455556667777775 55666677777776


Q ss_pred             HHHHHHH
Q 022643          276 YMFIWKL  282 (294)
Q Consensus       276 ~~~~~~l  282 (294)
                      ..+.+..
T Consensus       259 ~~~~~~~  265 (279)
T PRK12884        259 RKITLTA  265 (279)
T ss_pred             HHHHHHH
Confidence            4443333

>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=100.00  E-value=7.3e-32  Score=245.10  Aligned_cols=229  Identities=15%  Similarity=0.166  Sum_probs=171.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcccChhhhhhcCC--CCcccccccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 022643           36 TGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKP--YLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAW  113 (294)
Q Consensus        36 ~~~l~~ll~~~l~~~a~~~iNd~~D~~~D~~n~p--~Rpi~sG~is~~~a~~~~~~~~~~~l~l~~~l~~~~~~~~~~~~  113 (294)
                      ...+.++++++++++++|++|||+|+|.|++|+|  +||+++|++|++|++.++.++.++++.+++.+|+...... +.+
T Consensus        45 ~~~ll~~l~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~l~~~~~~l~~~~~~~~~~~~-~~~  123 (285)
T PRK12847         45 SLLVLFIIGSVLMRSAGCIINDIFDRKIDKHVARTKNRPLASGALSVKQALILLFILLLIALVILLLLNKTTIYLS-FIA  123 (285)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHhhhccCCCcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHH
Confidence            3456678899999999999999999999998764  8999999999999999999999999988888887666544 566


Q ss_pred             HHHHHHhcCCccccccccCchhhHHHHHHHhhhHhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHHhhcC
Q 022643          114 IFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLH  193 (294)
Q Consensus       114 ~~l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~  193 (294)
                      .+..+.||.      .||++.++++..++..+..+..     ++.+..|.    .+...++.....++|+.++++++++|
T Consensus       124 ~~~~~~Y~~------~Kr~~~~~~~~~g~~~~~~~l~-----~~~a~~g~----~~~~~~~l~~~~~~w~~~~~~~~a~~  188 (285)
T PRK12847        124 VILIVLYPL------MKRFFYWPQLFLGFTFNMGILM-----AFAAVQNQ----LDIEAILLYIGCIFWTIGYDTIYAYQ  188 (285)
T ss_pred             HHHHHhccc------cccCCcccHHHHHHHHHHHHHH-----HHHHHcCC----CcHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            667899984      6888877887765544422222     22233332    45556666677889999999999999


Q ss_pred             ChHhhHhcCCccchhhccHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHH
Q 022643          194 DVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASIL  273 (294)
Q Consensus       194 D~e~D~~~G~~Tlpv~~G~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~~  273 (294)
                      |+|+|+|+|+||+|+++|+|++.++........+. ....++......  .+| +...+....+.++...+|.+|+++|+
T Consensus       189 D~e~D~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~--~~y-~~~~~~~~~l~~~~~~~~~~~~~~~~  264 (285)
T PRK12847        189 DKKDDLKIGVKSTAIYFGNKTRKYILRLYIISLIL-WLILGIISSLHN--IFY-LAILAAAGIFYYQYKLLDFDNPANCM  264 (285)
T ss_pred             cHhhHHHcCCchhHHHhccccHHHHHHHHHHHHHH-HHHHHHHhcCcH--HHH-HHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence            99999999999999999999998887766544433 334444444332  233 34455667888999999988887765


Q ss_pred             HHH-HHHHHHHH
Q 022643          274 SFY-MFIWKLYY  284 (294)
Q Consensus       274 ~f~-~~~~~l~~  284 (294)
                      +.| .+.+.++.
T Consensus       265 ~~f~~~~~~~~l  276 (285)
T PRK12847        265 YAFKANHYVGLL  276 (285)
T ss_pred             HHHHHhHHHHHH
Confidence            554 45555543

>PRK12392 bacteriochlorophyll c synthase; Provisional

Probab=100.00  E-value=3.8e-32  Score=250.36  Aligned_cols=209  Identities=21%  Similarity=0.326  Sum_probs=155.7

Q ss_pred             HHHHHHHHHHHHHhhcccChhhhhhcCCCCcccccccCHHHHHHHHHHHHHHHHHHHHHhhh-------HHHHHHHHHHH
Q 022643           42 LVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRS-------PPFIWAVIAWI  114 (294)
Q Consensus        42 ll~~~l~~~a~~~iNd~~D~~~D~~n~p~Rpi~sG~is~~~a~~~~~~~~~~~l~l~~~l~~-------~~~~~~~~~~~  114 (294)
                      ++...+..+++|++|||+|+|+|++|+|+||+++|++|++|++....++.++++.++..++.       +.+....+.+.
T Consensus        56 ~~~~~L~~~a~~~iND~~D~~~D~~n~rtRpl~~G~is~~~al~~~~~l~~la~~lg~~L~~~~~~~~~~~il~~~~~~l  135 (331)
T PRK12392         56 LMYGPLGTGFSQSVNDYFDLELDRVNEPTRPIPSGRLSEKEALWNSIIVLLLAIGLGVWLGLHIGGERGMVIISSILAGL  135 (331)
T ss_pred             HHHHHHHHHHHhHHhcceeecccccCCCCCCCCcCCcCHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHH
Confidence            34445566789999999999999999999999999999999999999888888877766542       22333334667


Q ss_pred             HHHHHhcCCccccccccCchhhHHHHHHHhhhHhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHHhhcCC
Q 022643          115 FVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHD  194 (294)
Q Consensus       115 ~l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~D  194 (294)
                      +++++||.  ||+|+||+++.++..+++.++.....     .+.+..|.    .+...++.....++|+.+++++||++|
T Consensus       136 ~l~~~YS~--~P~~lKr~~~~g~~~vGl~~~~~~~~-----~~~a~~g~----~~~~~~~l~~~~~l~~~~~~~i~d~~D  204 (331)
T PRK12392        136 FVAYIYSA--PPLKLKKNILTSAPAVGFSYGFITFL-----SANALFSD----IRPEVVWLAGLNFFMAIALIIMNDFKS  204 (331)
T ss_pred             HHhhhhcC--CchhhhccchhHHHHHHHHHHHHHHH-----HHHHHhcC----CCHHHHHHHHHHHHHHHHHHHHHcccc
Confidence            78999994  89999999887777665544432211     12233442    344555555667889999999999999


Q ss_pred             hHhhHhcCCccchhhccHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHhhc
Q 022643          195 VDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAV  264 (294)
Q Consensus       195 ~e~D~~~G~~Tlpv~~G~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  264 (294)
                      +|+|++.|+||+|+++|+|+++++......+.....+..+.....++   .+.....+.+..+.+|.+..
T Consensus       205 ~egD~~~G~kTlpV~~G~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~q~~l~  271 (331)
T PRK12392        205 VEGDKEGGLKSLTVMIGAKNTFLVSFIIIDLVFAVFAWLAWSWGFTV---LMYFILVGLVLNIVIQIQLY  271 (331)
T ss_pred             hhhHHHcCCeeeEeEEcHhhHHHHHHHHHHHHHHHHHHHHHHhcccH---HHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999887766566666666666666654   22344556666777777653

>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=100.00  E-value=4.7e-32  Score=248.75  Aligned_cols=226  Identities=16%  Similarity=0.114  Sum_probs=167.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcccChhhhhhcCC--CCcccccccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 022643           37 GLMEALVPAVLMHIYVVAINQLSDVEVDKVNKP--YLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWI  114 (294)
Q Consensus        37 ~~l~~ll~~~l~~~a~~~iNd~~D~~~D~~n~p--~Rpi~sG~is~~~a~~~~~~~~~~~l~l~~~l~~~~~~~~~~~~~  114 (294)
                      ..+.++++.+++++++|++|||+|+|+|++|+|  +||+++|++|++|++.+..++.++++.+.+..|++..... +.+.
T Consensus        73 ~~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~l~-~~~~  151 (314)
T PRK12878         73 HLFLFFVGAIAMRGAGCTYNDIVDRDIDAKVARTRSRPLPSGQVSRKQAKVFMVLQALVGLAVLLQFNWFAIALG-IASL  151 (314)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHH
Confidence            456678899999999999999999999998774  8999999999999999999999999988888887665544 5666


Q ss_pred             HHHHHhcCCccccccccCchhhHHHHHHHhhhHhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHHhhcCC
Q 022643          115 FVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHD  194 (294)
Q Consensus       115 ~l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~D  194 (294)
                      +..+.||.      .||++.+++...+...+.....|+     .+..|.    ++...++++....+|+..++.++++||
T Consensus       152 ~~~~~Y~~------~KR~t~~~~~~~Gl~~~~~~l~g~-----~a~~g~----~~~~~~~l~~~~~~w~~~~~~~~a~~D  216 (314)
T PRK12878        152 AIVAAYPF------MKRITWWPQFFLGLAFSWGALMGW-----AAHFGS----LSLAAVLLYAGSIAWTIGYDTIYAHQD  216 (314)
T ss_pred             HHHHHHHH------HHhcCCcchHHHHHHHHHHHHHHH-----HHHhCC----CchHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            77899984      798877776655443332222222     223342    345555666677889999999999999


Q ss_pred             hHhhHhcCCccchhhccHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHH
Q 022643          195 VDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILS  274 (294)
Q Consensus       195 ~e~D~~~G~~Tlpv~~G~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~~~  274 (294)
                      +|+|+|+|+||+|+++|+|++++...... +......+.+.....++   .|.++.......+.+|..++|.+|+++|++
T Consensus       217 ~e~D~~aGi~slpv~~G~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  292 (314)
T PRK12878        217 KEDDALIGVKSTARLFGDHTKTWLVLFYG-LAVLLMGLAFWLAGVPL---LALLGLLAAAAHLAWQIARLDIDDPDQCLR  292 (314)
T ss_pred             HhhHHHcCCcccchHhchhhHHHHHHHHH-HHHHHHHHHHHHhcCcH---HHHHHHHHHHHHHHHHHHHcccCChHHHHH
Confidence            99999999999999999999988775444 33333334444444444   344555566677889999998888887877


Q ss_pred             HHHH-HHHH
Q 022643          275 FYMF-IWKL  282 (294)
Q Consensus       275 f~~~-~~~l  282 (294)
                      +|.. ++.+
T Consensus       293 ~F~~n~~~~  301 (314)
T PRK12878        293 LFKSNRDAG  301 (314)
T ss_pred             HHHHhHHHH
Confidence            7763 4443

>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase

Probab=100.00  E-value=4.7e-32  Score=246.18  Aligned_cols=184  Identities=22%  Similarity=0.300  Sum_probs=145.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhcccChhhhhhcCCCCcccccccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 022643           38 LMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVG  117 (294)
Q Consensus        38 ~l~~ll~~~l~~~a~~~iNd~~D~~~D~~n~p~Rpi~sG~is~~~a~~~~~~~~~~~l~l~~~l~~~~~~~~~~~~~~l~  117 (294)
                      ++.++++..+.++++|.+|||+|+|+|++|+|+||+++|++|++|++....++..+++.++..++.+......+.+.+.+
T Consensus        40 ll~~~~~~~l~~~~~n~~Nd~~D~~~D~~~~~~Rpi~~G~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~~l~~~~~~~~  119 (283)
T TIGR01476        40 LLGMLMAGPLGTGFSQSINDYFDRDVDAINEPQRPIPSGIISLREVRWNWLVLTVAGLLVALVLGNWLIVLFTVVGIVLA  119 (283)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHhhhCcccCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34467788999999999999999999999999999999999999999999999999998888877665333345667779


Q ss_pred             HHhcCCccccccccCchhhHHHHHHHhhhHhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHHhhcCChHh
Q 022643          118 TAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDG  197 (294)
Q Consensus       118 ~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~D~e~  197 (294)
                      +.||  .||+|+||+++++++.+++..+..   ++.. + ....+.    .++..++.....++++.+++++||+||+|+
T Consensus       120 ~~Ys--~~p~~lk~~~~~g~~~vg~~~~~~---~~~~-~-~~~~~~----~~~~~~~~~~~~~l~~~~i~~~nd~~D~~~  188 (283)
T TIGR01476       120 VIYS--MPPIKLKRNGWLGPPAVGLSYEGL---PWMA-G-HAIFAP----LTWQSVVVALIYSLGAHGIMTLNDFKSVEG  188 (283)
T ss_pred             heec--CchhhhccCCCccHHHHHHHHHHH---HHHH-H-HHHhCC----CCHHHHHHHHHHHHHHHHHHHHHhccchhh
Confidence            9999  589999999988888776543322   1111 1 122232    344444445556778888999999999999


Q ss_pred             hHhcCCccchhhccHHHHHHHHHHHHHHHHHHHHH
Q 022643          198 DKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVV  232 (294)
Q Consensus       198 D~~~G~~Tlpv~~G~~~a~~~~~~l~~~~~~~~~~  232 (294)
                      |+++|+||+|+++|+|++++++..+..+++...+.
T Consensus       189 D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~  223 (283)
T TIGR01476       189 DRQLGLRSLPVMIGVKRAAIVAVTTINVFQAMVIG  223 (283)
T ss_pred             HHHcCCcCcceEEcHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999988877666654443

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.

>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

Probab=100.00  E-value=1.9e-31  Score=241.71  Aligned_cols=226  Identities=19%  Similarity=0.214  Sum_probs=164.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcccChhhhhhcCCCCcccccccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 022643           37 GLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFV  116 (294)
Q Consensus        37 ~~l~~ll~~~l~~~a~~~iNd~~D~~~D~~n~p~Rpi~sG~is~~~a~~~~~~~~~~~l~l~~~l~~~~~~~~~~~~~~l  116 (294)
                      ..+.++++.+++++++|++|||+|+|+|++|+|+||+|+|++|++|++.++.++.++++.++..+|+.+.... +.+.++
T Consensus        38 ~~~l~~l~~~l~~~~~~~iNd~~D~~iD~~~~~~Rpl~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~-~~~~~~  116 (279)
T PRK09573         38 GIILAALVVFLVCAGGNVINDIYDIEIDKINKPERPIPSGRISLKEAKIFSITLFIVGLILSIFINIYAFLIA-LLNSIL  116 (279)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcCCCccCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHH
Confidence            4556788999999999999999999999999999999999999999999999999999999888887766544 456666


Q ss_pred             HHHhcCCccccccccCchhhHHHHHHHhhhHhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHHhhcCChH
Q 022643          117 GTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVD  196 (294)
Q Consensus       117 ~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~D~e  196 (294)
                      .+.||.     ++||++.++|+.++...|..+..|+     .++.+ .     ...+++....++|+.+++++||+||+|
T Consensus       117 ~~~Ys~-----~lKr~~~~~~~~vg~~~G~~~~~g~-----~~~~~-~-----~~~~~l~~~~f~~~~~~~~~~~~~D~~  180 (279)
T PRK09573        117 LYLYAK-----DLKKTGLIGNLIVAYLTGLSFIFGG-----LAVFN-V-----LRIIILFLCAFFSTWSREIVKDIEDIE  180 (279)
T ss_pred             HHHHHH-----HHhcCCcHHHHHHHHHHHHHHHHHH-----HHHcc-c-----hHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence            889984     4799998899888766665443332     22322 1     122334445667888899999999999


Q ss_pred             hhHhcCCccchhhccHHHHHHHHHHHHHHHHHHHHHHHhhcc-hhhHHHHHHHHHHHHHHHHHHHH-hhcCCCChHHHHH
Q 022643          197 GDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSP-FLANKLITIIGHGILASIFWLRV-RAVDLSDNASILS  274 (294)
Q Consensus       197 ~D~~~G~~Tlpv~~G~~~a~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~-~~~d~~~~~~~~~  274 (294)
                      +|++.|+||+|+++|+|+++++......+...... ...... .++   .|..+..+....+.++. +..+.+|+++|+.
T Consensus       181 ~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~---~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  256 (279)
T PRK09573        181 GDLKENVITLPIKYGIKKSWYIAKILLILAIVLSP-LPYFLGIFGI---YYLIVVIICDILFIIAMLILLKNPSIEGASK  256 (279)
T ss_pred             hHHHCCCccccHHhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH---HHHHHHHHHhHHHHHHHHHHHcCCCHHHHHH
Confidence            99999999999999999999887665544433322 222211 223   45556566666677774 3445556665544


Q ss_pred             H-HHHHHHHH
Q 022643          275 F-YMFIWKLY  283 (294)
Q Consensus       275 f-~~~~~~l~  283 (294)
                      - ....+..+
T Consensus       257 ~~~~~~~~m~  266 (279)
T PRK09573        257 ASKYLKIIMI  266 (279)
T ss_pred             HHHHHHHHHH
Confidence            3 33444444

>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed

Probab=100.00  E-value=1.9e-31  Score=245.26  Aligned_cols=182  Identities=24%  Similarity=0.343  Sum_probs=144.2

Q ss_pred             HHHHHHHHHHHHHHHHhhcccChhhhhhcCCCCcccccccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 022643           39 MEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGT  118 (294)
Q Consensus        39 l~~ll~~~l~~~a~~~iNd~~D~~~D~~n~p~Rpi~sG~is~~~a~~~~~~~~~~~l~l~~~l~~~~~~~~~~~~~~l~~  118 (294)
                      +..+++..++++++|.+|||+|+|+|++|+|+||+++|++|++|++..+.++.++++.+++.+|++...+. +.+.+.++
T Consensus        68 l~~~l~~~l~~~~~~~~Nd~~D~~~D~~~~~~Rpl~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~-l~~~~~~~  146 (314)
T PRK07566         68 AGMLLAGPLLCGTSQTLNDYFDREVDAINEPYRPIPSGAISLRWVLYLIAVLTVLGLAVAYLLGPWVFLAA-LLGLFLAW  146 (314)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhccCccccCCCCCCCCCceeCHHHHHHHHHHHHHHHHHHHHHHChHHHHHH-HHHHHHHH
Confidence            44567788899999999999999999999999999999999999999999999999988888887655433 56677789


Q ss_pred             HhcCCccccccccCchhhHHHHHHHhhhHhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHHhhcCChHhh
Q 022643          119 AYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGD  198 (294)
Q Consensus       119 ~Ys~~~pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~D~e~D  198 (294)
                      .||  .||+++||+++++++.++...|.++...    +..+..++   ..++..++......++..+++++||++|+|+|
T Consensus       147 ~Yt--~gP~~lK~~~~~g~i~vg~~~g~~~~~~----g~~~~~~~---~~~~~~~l~~~~~~l~~~~~~~~~d~~D~e~D  217 (314)
T PRK07566        147 IYS--APPLRLKQNGWLGNYAVGLSYEGLPWWA----GAAAFGAG---LPSWPIVILALLYSLGAHGIMTLNDFKSVEGD  217 (314)
T ss_pred             Hhc--CCccccccccchhhHHHHHHHHHHHHHH----HHHHhccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhHhH
Confidence            999  4899999999888888766544322211    22223322   23444555555566777888999999999999


Q ss_pred             HhcCCccchhhccHHHHHHHHHHHHHHHHHHH
Q 022643          199 KKFGIKTLSVMLGKERVFRLSVSMLSIAYGAA  230 (294)
Q Consensus       199 ~~~G~~Tlpv~~G~~~a~~~~~~l~~~~~~~~  230 (294)
                      +++|+||+|+++|+|+++++...+..+.+...
T Consensus       218 ~~aG~~Tlpv~~G~~~a~~l~~~l~~~~~~~~  249 (314)
T PRK07566        218 RQLGLRSLPVVFGEKNAARIACVVIDLFQLAV  249 (314)
T ss_pred             HHcCCcccceeEcHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998877766666643

>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed

Probab=100.00  E-value=2.9e-30  Score=233.82  Aligned_cols=230  Identities=15%  Similarity=0.143  Sum_probs=161.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhcccChhhhhhcC--CCCcccccccCHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHH
Q 022643           38 LMEALVPAVLMHIYVVAINQLSDVEVDKVNK--PYLPLASGEISMGTGIAITLASALMSLAYAVM-IRSPPFIWAVIAWI  114 (294)
Q Consensus        38 ~l~~ll~~~l~~~a~~~iNd~~D~~~D~~n~--p~Rpi~sG~is~~~a~~~~~~~~~~~l~l~~~-l~~~~~~~~~~~~~  114 (294)
                      .+...++.+++++++|++|||.|+|+|++|+  |+||+|+|++|++||..++..+.++++.++.. +|+.+.....+...
T Consensus        38 ~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~  117 (279)
T PRK12869         38 LIPLLIGGTLASGGSAAFNHGIERDIDKVMSRTSKRPTPVGLVNRKEALAVGSALSALGTALGFLLLGPLTALFIALGWF  117 (279)
T ss_pred             HHHHHHHHHHHHHHHHHHhchHhcCCCCCCCCCCCCCcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556778889999999999999999999988  59999999999999999999999999988877 77654333334555


Q ss_pred             HHHHHhcCCccccccccCchhhHHHHHHHhhhHhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHHhhcCC
Q 022643          115 FVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHD  194 (294)
Q Consensus       115 ~l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~D  194 (294)
                      +..+.||.     ++||++....+..+. .|....++.+    .+..|.    .+...+++....++|+.++....+++|
T Consensus       118 ~~~~~Yt~-----~lKr~~~~~~~v~~~-~g~~~~l~g~----~a~~g~----~~~~~~ll~~~~~~w~~~~~~~l~~~d  183 (279)
T PRK12869        118 FYAVVYTI-----WLKPRTWLNIVIGGF-AGNAAALAGY----ASGTGS----LDLEAVLLSFLIYLWTPGHIWSLALKY  183 (279)
T ss_pred             HHHhhhCc-----ccccCChHHHHHHHH-HHHHHHHHHH----HHHhCC----CCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            67788985     479999864444333 3333333222    223332    355555555667789888877788899


Q ss_pred             hHhhHhcCCccchhhccHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHH-HHHHHHHHHHhhcCCCChHHH-
Q 022643          195 VDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHG-ILASIFWLRVRAVDLSDNASI-  272 (294)
Q Consensus       195 ~e~D~~~G~~Tlpv~~G~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~d~~~~~~~-  272 (294)
                      +|||+++|+||+|+++|+|++++.......+........+. ...++   .|..... ..+..+.++.+..+.+|+++| 
T Consensus       184 ~edd~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~-~~~g~---~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~  259 (279)
T PRK12869        184 REDYRRAGVPMLPAVVGEKTSVRAISISNALMIPYILLLYL-YYIGL---IGLILVAILSAALMATSIRALLNPTKEEAW  259 (279)
T ss_pred             HHhHHHcCCeecceeecHHHHHHHHHHHHHHHHHHHHHHHH-hhccH---HHHHHHHHHHHHHHHHHHHHhhCCChHHHH
Confidence            99999999999999999999998876665444433333332 23333   3333433 334455566666665555555 


Q ss_pred             HHHHHHHHHHHHH
Q 022643          273 LSFYMFIWKLYYA  285 (294)
Q Consensus       273 ~~f~~~~~~l~~~  285 (294)
                      +.|..++|++...
T Consensus       260 ~~f~~s~~~l~~~  272 (279)
T PRK12869        260 KMFKASSPYLALF  272 (279)
T ss_pred             HHHHHHHHHHHHH
Confidence            5577788887654

>TIGR02056 ChlG chlorophyll synthase, ChlG

Probab=99.98  E-value=3.9e-30  Score=235.67  Aligned_cols=181  Identities=25%  Similarity=0.399  Sum_probs=140.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhcccChhhhhhcCCCCcccccccCHHHHHHHHHHHHHHHHHHHHHhhh------HHHHHHHH
Q 022643           38 LMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRS------PPFIWAVI  111 (294)
Q Consensus        38 ~l~~ll~~~l~~~a~~~iNd~~D~~~D~~n~p~Rpi~sG~is~~~a~~~~~~~~~~~l~l~~~l~~------~~~~~~~~  111 (294)
                      ++.+++++.++++++|.+|||+|+|.|+.|+|+||+++|++|+++++..+..+..+++.++..+..      +......+
T Consensus        56 ll~~ll~~~l~~~~~n~~NDy~D~d~D~~~~~~Rpi~~G~is~~~a~~~~~~l~~~~~~lg~~l~~~~~~~~~~~~~l~~  135 (306)
T TIGR02056        56 ALCMLLSGPCLTGYTQTINDFYDRDIDAINEPYRPIPSGAISEPEVITQIVLLFIAGIAIAFILDLWAGHEFPNVFVLAL  135 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHhhhhhhccCCCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHH
Confidence            445567889999999999999999999999999999999999999999988888888877765431      22223335


Q ss_pred             HHHHHHHHhcCCccccccccCchhhHHHHHHHhhhHhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHHhh
Q 022643          112 AWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKD  191 (294)
Q Consensus       112 ~~~~l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~d  191 (294)
                      .+.+.++.||  .||+|+||++.+|++.++...+..   +++. + .+..|.    +++..++.....++|+.++++.||
T Consensus       136 ~~~~~~~~Yt--~gP~~lk~~g~~G~i~vg~~~~~~---~~~~-~-~a~~g~----~~~~~~l~~~~~~l~~~~i~~~n~  204 (306)
T TIGR02056       136 FGSFIAFIYS--APPLKLKQNGWLGNFALGASYIAL---PWWA-G-HALFGE----LNPDIAVLTLIYSIAGLGIAIVND  204 (306)
T ss_pred             HHHHHHHHHc--CChhhhhhcccHHHHHHHHHHHHH---HHHH-H-HHHhCC----CcHHHHHHHHHHHHHHHHHHHHHH
Confidence            6777799999  489999999988887765443322   2221 1 122342    345555555566778889999999


Q ss_pred             cCChHhhHhcCCccchhhccHHHHHHHHHHHHHHHHHH
Q 022643          192 LHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGA  229 (294)
Q Consensus       192 ~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~l~~~~~~~  229 (294)
                      ++|+|+|++.|+||+|+++|+|+++++...+...++..
T Consensus       205 ~~D~e~D~~~G~~Tlpv~lG~~~a~~~~~~l~~~~~~~  242 (306)
T TIGR02056       205 FKSVEGDRALGLQSLPVAFGIETAAWICVGAIDIFQGL  242 (306)
T ss_pred             ccChHHHHHcCCcCcchhcChHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999988776665554

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).

>PLN00012 chlorophyll synthetase; Provisional

Probab=99.98  E-value=9.2e-30  Score=237.66  Aligned_cols=230  Identities=21%  Similarity=0.307  Sum_probs=156.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhcccChhhhhhcCCCCcccccccCHHHHHHHHHHHHHHHHHHHHHh-------hhHHHHHHH
Q 022643           38 LMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMI-------RSPPFIWAV  110 (294)
Q Consensus        38 ~l~~ll~~~l~~~a~~~iNd~~D~~~D~~n~p~Rpi~sG~is~~~a~~~~~~~~~~~l~l~~~l-------~~~~~~~~~  110 (294)
                      ++..+++..++++++|.+|||+|+|+|++|+|+||+++|++|+++++.....+..+++.+++.+       +++.+ ...
T Consensus       125 ll~~ll~~~L~~~~an~iNDy~D~~iD~~~~~~Rpi~sG~Is~~~al~~~~~l~~~~l~l~~~L~~~~~~~~~~~~-~l~  203 (375)
T PLN00012        125 IVCMLMSGPFLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLGGLGLAYTLDVWAGHDFPIVF-YLA  203 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHHCeecHhhhccCCCCCCcCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHH-HHH
Confidence            4566778889999999999999999999999999999999999999997766666666666544       22222 223


Q ss_pred             HHHHHHHHHhcCCccccccccCchhhHHHHHHHhhhHhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHHh
Q 022643          111 IAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIK  190 (294)
Q Consensus       111 ~~~~~l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~  190 (294)
                      +.+.+++++||  .||+++||++++|++..+...+   .+|++. + .++.|.    ++...++.....++|+.+++++|
T Consensus       204 l~gi~l~~~YS--~pPl~lKr~~~~G~v~lG~~~~---~lp~~~-g-~a~~g~----~s~~~illal~~~l~~lai~ivn  272 (375)
T PLN00012        204 LGGSLLSYIYS--APPLKLKQNGWIGNYALGASYI---SLPWWA-G-QALFGT----LTPDVVVLTLLYSIAGLGIAIVN  272 (375)
T ss_pred             HHHHHHhhhhc--CCchhhhHhccHhHHHHHHHHH---HHHHHH-H-HHHcCC----CCHHHHHHHHHHHHHHHHHHHHh
Confidence            45667799999  4899999999988877554333   233321 1 133443    45555555566778888999999


Q ss_pred             hcCChHhhHhcCCccchhhccHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHH-HHHHHHHHHHHHHHhhcCCCCh
Q 022643          191 DLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITI-IGHGILASIFWLRVRAVDLSDN  269 (294)
Q Consensus       191 d~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~d~~~~  269 (294)
                      |++|+|+|++.|+||+|+++|+|++++++...+.+....  ..++......  .+|. +........+.++.+ ...+||
T Consensus       273 d~~Die~Dr~aG~~TLpV~~G~~~a~~l~~~~l~l~~l~--~~~~l~~~~~--~~y~~~~~~l~l~~l~~~~~-~~~~~p  347 (375)
T PLN00012        273 DFKSIEGDRALGLQSLPVAFGVETAKWICVGSIDITQLS--VAGYLLAIGK--PYYALALLGLIIPQIFFQFK-YFLPDP  347 (375)
T ss_pred             hhcchhhHHHcCCcccceeechHHHHHHHHHHHHHHHHH--HHHHHHHHhH--HHHHHHHHHHHHHHHHHHHH-HHhcCH
Confidence            999999999999999999999999999876544333332  2232222111  1221 222222333333333 333588


Q ss_pred             HHHHHHHHHHHHHHH
Q 022643          270 ASILSFYMFIWKLYY  284 (294)
Q Consensus       270 ~~~~~f~~~~~~l~~  284 (294)
                      +++...|...-..++
T Consensus       348 ~~~~~~~~~~a~~~~  362 (375)
T PLN00012        348 VKNDVKYQASAQPFL  362 (375)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            888777776444443

>PRK04375 protoheme IX farnesyltransferase; Provisional

Probab=99.98  E-value=3.4e-30  Score=235.18  Aligned_cols=231  Identities=15%  Similarity=0.093  Sum_probs=160.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcccChhhhhhcC--CCCcccccccCHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHH
Q 022643           37 GLMEALVPAVLMHIYVVAINQLSDVEVDKVNK--PYLPLASGEISMGTGIAITLASALMSLAYAVM-IRSPPFIWAVIAW  113 (294)
Q Consensus        37 ~~l~~ll~~~l~~~a~~~iNd~~D~~~D~~n~--p~Rpi~sG~is~~~a~~~~~~~~~~~l~l~~~-l~~~~~~~~~~~~  113 (294)
                      ..+..+++.+++++++|++|||+|+|+|++|+  |+||+|+|++|++|++.++.++.++++.+++. .|+.+.....+..
T Consensus        45 ~~~l~~l~~~l~~aa~~~iNd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~l~~~g~~l~~~l~~~~~~~l~~~~~  124 (296)
T PRK04375         45 LLLLTLLGIALVAGAAGALNNYIDRDIDAKMERTKNRPLVTGRISPREALIFGLVLGVLGFLLLGLFVNPLAAWLTLAGI  124 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCccCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            34567889999999999999999999999988  59999999999999999999999889888754 4655554332222


Q ss_pred             HHHHHHhcCCccccccccCchhhHHHHHHHhhhHhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHHhhcC
Q 022643          114 IFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLH  193 (294)
Q Consensus       114 ~~l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~  193 (294)
                      ....+.||.     ++||++. ++..++...+....+    .++.++.|.    .+...+++.....+|+..++..++++
T Consensus       125 ~~~~~~Ys~-----~lKr~~~-~~~~v~~~~g~~~~l----~g~~a~~g~----~~~~~~~l~~~~~lw~~~~~~~~~~~  190 (296)
T PRK04375        125 FFYVVVYTL-----WLKRRTP-QNIVIGGAAGAMPPL----IGWAAVTGS----LSWEALILFLIIFLWTPPHFWALAIF  190 (296)
T ss_pred             HHHHHHhcc-----chhcCCc-cchHHHHHHHHhHHH----HHHHHhCCC----CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334678984     4899996 454444332322211    122233332    35555666677889999999999999


Q ss_pred             ChHhhHhcCCccchhhccHHHHHHHHHHHHHHHHHHHHHHHhh-cchhhHHHHHHHHHHHHHHHHHHHHhhcCCCChHHH
Q 022643          194 DVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGAS-SPFLANKLITIIGHGILASIFWLRVRAVDLSDNASI  272 (294)
Q Consensus       194 D~e~D~~~G~~Tlpv~~G~~~a~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~  272 (294)
                      |+|||+++|+||+|+++|+|++++.......+.... .++... ...++  .++..+.......+.++.+..+.+|+++|
T Consensus       191 d~~D~~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~y~~~~~~~~~~~l~~~~~~~~~~~~~~~  267 (296)
T PRK04375        191 RKDDYAAAGIPMLPVVKGIRVTKRQILLYTVLLVAV-SLLPVLLGMAGL--LYLVVALLLGAWFLYYAWRLYRKDDRKWA  267 (296)
T ss_pred             HHhhHHHcCCCccceeeCHHHHHHHHHHHHHHHHHH-HHHHHHHhccCH--HHHHHHHHHHHHHHHHHHHHhcCcCHHHH
Confidence            999999999999999999999888766544333322 222222 22333  23333444556667777888877777655


Q ss_pred             -HHHHHHHHHHHH
Q 022643          273 -LSFYMFIWKLYY  284 (294)
Q Consensus       273 -~~f~~~~~~l~~  284 (294)
                       +.|+.++|.+..
T Consensus       268 ~~~F~~s~~~~~~  280 (296)
T PRK04375        268 RKLFRYSINYLTL  280 (296)
T ss_pred             HHHHHHHHHHHHH
Confidence             666677766644

>PRK05951 ubiA prenyltransferase; Reviewed

Probab=99.98  E-value=1.8e-29  Score=230.32  Aligned_cols=254  Identities=13%  Similarity=0.148  Sum_probs=171.8

Q ss_pred             hhHHHHHHHHHHHHHhhhhccccCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcccChhhhhhcC-----CCCcccccccC
Q 022643            5 LFFVFMYQIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK-----PYLPLASGEIS   79 (294)
Q Consensus         5 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~l~~~a~~~iNd~~D~~~D~~n~-----p~Rpi~sG~is   79 (294)
                      ++.++....+|...+.  .  ...+++   +...+.++++++++|.++|.+|||+|+|.|+.|+     |+||+++|++|
T Consensus        16 l~~s~~~v~lG~a~a~--~--~~~~f~---~~~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~rt~~~~r~l~~G~is   88 (296)
T PRK05951         16 FVMTAIVAFFSIAYGY--Y--LFRSFD---PLLGALMLLGYFLLHASLNVFNDYKDYVLDCDHHETTGYRQHPIQAGIMT   88 (296)
T ss_pred             HHHHHHHHHHHHHHHH--H--hcCCcC---HHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCccccccCCCCCccccCCcC
Confidence            3445555556653332  1  112344   3445667889999999999999999966555554     78999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHH----HhhhHHHHHHHHHHHHHHHHhcCCccccccccCchhhHHHHHHHhhhHhHHHHHHH
Q 022643           80 MGTGIAITLASALMSLAYAV----MIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVH  155 (294)
Q Consensus        80 ~~~a~~~~~~~~~~~l~l~~----~l~~~~~~~~~~~~~~l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~  155 (294)
                      ++|++..+.++..+++.++.    ..+++.+ ...+++.+.++.||  .||+++|++++ |++.++..+|....+|.+. 
T Consensus        89 ~~~~~~~~~~~~~ia~~~g~~l~~~~~~~~l-~l~~~~~~~~~~Yt--~~P~~lky~gl-Ge~~v~~~~g~~~vlg~~~-  163 (296)
T PRK05951         89 LGHLRVLGIALGAIALQLGWSLVLDRGIGAV-TLALLGVFLWTCYM--GPPFFLKYRWL-GEHLVFYAWSHMLVMGLIY-  163 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccHHHH-HHHHHHHHHHHHHc--CCCcccCCCCc-hHHHHHHHHHHHHHHHHHH-
Confidence            99999988877666654433    2343333 33467788899999  58999998875 7877776667555555432 


Q ss_pred             HHHHhhcCCccccchHHHHHHHHHHHHHHHHHHHhhcCChHhhHhcCCccchhhccHHHHHHHHHHHHHHHHHHHHHHHh
Q 022643          156 IQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGA  235 (294)
Q Consensus       156 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~l~~~~~~~~~~~~~  235 (294)
                          ++++.   .+...+.......+++.....+||+||+|+|++.|+||+|+++|+|++ +........+|...+....
T Consensus       164 ----~~~~~---~~~~~~~~sl~~~l~~~~il~~n~~~D~e~D~~~G~~Tlav~lG~~~a-~~~~~~~~~~~~~~~~~~~  235 (296)
T PRK05951        164 ----VWLGN---LSSPNLLAGVPLGLLMALVLLSNNLRDIEDDERKGIPTLAVIFGRRGA-ALYIFALLSPYVILQILLI  235 (296)
T ss_pred             ----HHhCc---ccHHHHHHHHHHHHHHHHHHHHCCCccchhHHHCCCeeeeeeEcHhhH-HHHHHHHHHHHHHHHHHHH
Confidence                33332   344455555556677777889999999999999999999999999999 6655556566665444433


Q ss_pred             hcchhhHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHH
Q 022643          236 SSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMF  278 (294)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~~~f~~~  278 (294)
                      ....++....+.+++......+.++.+..|.+++.++.+.+..
T Consensus       236 ~g~~~~~~l~~ll~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (296)
T PRK05951        236 AILTPLISLWALLSLLVAYALCLWQLRKFPPDPDEATVQLFML  278 (296)
T ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHHhhCcccccHHHHHHHHH
Confidence            3222222234455555556666677777776666666666554

>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase

Probab=99.97  E-value=3.9e-29  Score=226.69  Aligned_cols=232  Identities=18%  Similarity=0.122  Sum_probs=163.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcccChhhhhhcC--CCCcccccccCHHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHH
Q 022643           37 GLMEALVPAVLMHIYVVAINQLSDVEVDKVNK--PYLPLASGEISMGTGIAITLASALMSLAYA-VMIRSPPFIWAVIAW  113 (294)
Q Consensus        37 ~~l~~ll~~~l~~~a~~~iNd~~D~~~D~~n~--p~Rpi~sG~is~~~a~~~~~~~~~~~l~l~-~~l~~~~~~~~~~~~  113 (294)
                      ..+...++.+++++++|++|||+|+|.|++|+  |+||+++|++|++|+..++.++.++++.+. ...|+...... ..+
T Consensus        36 ~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~~~~~g~~il~~~~~~~~~~l~-~~~  114 (280)
T TIGR01473        36 LLLLTLLGTTLAAASANAFNMYIDRDIDKKMKRTRNRPLVTGRISPREALAFGLLLGVLGVAILAAFVNPLAALLG-LFG  114 (280)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHH
Confidence            34567789999999999999999999999977  599999999999999999999998888844 45776555433 344


Q ss_pred             HH-HHHHhcCCccccccccCchhhHHHHHHHhhhHhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHHhhc
Q 022643          114 IF-VGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDL  192 (294)
Q Consensus       114 ~~-l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~  192 (294)
                      .+ ..+.||.     .+||++..+.+..++ .|....++.+    .+..|.    .+...+++.....+|+...+...++
T Consensus       115 ~~~~~~~Yt~-----~lKr~~~~~~~v~~~-~g~~~~l~g~----~a~~g~----~~~~~~~l~~~~~~w~~~~~~~~a~  180 (280)
T TIGR01473       115 IFFYVIVYTI-----WLKRRTPQNTVIGGF-AGAVPPLIGW----AAVTGS----ISLGAWLLFAIIFLWQPPHFWALAL  180 (280)
T ss_pred             HHHHHhhcCh-----hhccCCchhHHHHHH-HHHHHHHHHH----HHhcCC----CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            43 4789994     279988765555443 3333322222    222232    3555555666778898888778889


Q ss_pred             CChHhhHhcCCccchhhccHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHhhcCCC-ChHH
Q 022643          193 HDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLS-DNAS  271 (294)
Q Consensus       193 ~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~-~~~~  271 (294)
                      +|+|||+++|+||+|+++|+|++++................+.....++  .++..+..+....+.++.+..|.+ |+++
T Consensus       181 ~~~~dd~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~y~~~~~~~~~~~l~~~~~~~~~~~~~~~  258 (280)
T TIGR01473       181 KYKDDYRAAGIPMLPVVKGERITKRQIALYTAALLPVSLLLAFLGGTGW--LYLIVATLLGALFLYLAFKFYRDPTDRKK  258 (280)
T ss_pred             HhhhhHHHCCCccCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccH--HHHHHHHHHHHHHHHHHHHHhcCCCcHHH
Confidence            9999999999999999999998887766554333333333333334444  344456666677777888778766 6654


Q ss_pred             -HHHHHHHHHHHHHH
Q 022643          272 -ILSFYMFIWKLYYA  285 (294)
Q Consensus       272 -~~~f~~~~~~l~~~  285 (294)
                       .+.|+.+++.+...
T Consensus       259 ~~~~f~~s~~~~~~~  273 (280)
T TIGR01473       259 ARKLFKFSLIYLALL  273 (280)
T ss_pred             HHHHHHHHHHHHHHH
Confidence             46666677776554

This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.

>PRK13595 ubiA prenyltransferase; Provisional

Probab=99.97  E-value=5.5e-29  Score=223.75  Aligned_cols=175  Identities=19%  Similarity=0.255  Sum_probs=132.8

Q ss_pred             HHHHHHHHHHHHHHHHhhcccChhhhhhcCCCCcccccccCHHHHHHHHHHHHHH----HHHHHHHhhhHHHHHHHHHHH
Q 022643           39 MEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALM----SLAYAVMIRSPPFIWAVIAWI  114 (294)
Q Consensus        39 l~~ll~~~l~~~a~~~iNd~~D~~~D~~n~p~Rpi~sG~is~~~a~~~~~~~~~~----~l~l~~~l~~~~~~~~~~~~~  114 (294)
                      +.++...+..+.+.|.+|||+|+|+|++|+|+||+++|++|+++++.....+...    ++.+++..|+...... +++.
T Consensus        50 ~l~~~~~~p~n~~~~giND~fD~eiDa~Npr~~~i~~G~is~~~~~~~~~~~~~~~~~~~l~la~~l~~~~~~l~-~v~~  128 (292)
T PRK13595         50 PLLLYLTLPFNLLIYGLNDLADRETDAASPRKGGWQGARLSPGEVRPLLRAVLLLNAPFLLYLALLLPPAATLLL-LLYA  128 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCCCCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHH
Confidence            4556677789999999999999999999999999999999999998865544433    4556667776655443 5677


Q ss_pred             HHHHHhcCCccccccccCchhhHHHHHHHhhhHhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHHhhcCC
Q 022643          115 FVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHD  194 (294)
Q Consensus       115 ~l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~D  194 (294)
                      ++++.||  .||+|+|++|+++++++.. .+.    |+.  .+..+.|..    .....  .....+|.+++++++++||
T Consensus       129 ~l~~~YS--~pPlRlK~rp~l~~l~~~~-~g~----p~~--~~~~~~g~~----~~~~~--l~a~~~w~~g~dii~ai~D  193 (292)
T PRK13595        129 ALFVGYS--LPPLRFKARPFLDGLSNAA-YAL----PLA--LPALALGAP----VPWPP--LLALMAWSVGKHAFDAAQD  193 (292)
T ss_pred             HHHHHHc--cCccchhcCcchhHHHHHH-HHH----HHH--HHHHHcCCc----chHHH--HHHHHHHHHHHHHHHhccC
Confidence            8899999  5999999999999888632 232    221  122334432    22222  2345678899999999999


Q ss_pred             hHhhHhcCCccchhhccHHHHHHHHHHHHHHHHHH
Q 022643          195 VDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGA  229 (294)
Q Consensus       195 ~e~D~~~G~~Tlpv~~G~~~a~~~~~~l~~~~~~~  229 (294)
                      +|+||+.|+||+|+++|+|++.+++..+..++...
T Consensus       194 iegDr~~Gi~Slpv~lG~r~a~~~a~~~~~~a~~~  228 (292)
T PRK13595        194 IPADRAAGTRTVATTLGVRGTALYALAWFLLAGAL  228 (292)
T ss_pred             hHhHHHcCCeechHHhCcHhHHHHHHHHHHHHHHH
Confidence            99999999999999999999999988766555443

>KOG1381 consensus Para-hydroxybenzoate-polyprenyl transferase [Coenzyme transport and metabolism]

Probab=99.97  E-value=9e-31  Score=226.99  Aligned_cols=229  Identities=17%  Similarity=0.105  Sum_probs=181.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcccChhhhhhcCC--CCcccccccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 022643           36 TGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKP--YLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAW  113 (294)
Q Consensus        36 ~~~l~~ll~~~l~~~a~~~iNd~~D~~~D~~n~p--~Rpi~sG~is~~~a~~~~~~~~~~~l~l~~~l~~~~~~~~~~~~  113 (294)
                      ..+-++-.++++||+++|.+||..|+|.|++.+|  .||+++|++|++||..+..+...+++.+..++|+.+..+ +..+
T Consensus       103 ~mL~LFG~GAllMRgAGCtINDlwDkdlD~KVeRtklRPlAsG~ls~~qaI~fL~~ql~~gLgiLlqLn~ysi~l-g~~s  181 (353)
T KOG1381|consen  103 KMLALFGVGALLMRGAGCTINDLWDKDLDAKVERTKLRPLASGSLSPRQAIGFLGAQLSLGLGILLQLNWYSIAL-GASS  181 (353)
T ss_pred             HHHHHhcccHHHhccCCceehhhhhhhhhhhHhhhcccccccCCcchhHHHHHHHHHHHHhHHHHHhccHHHHHh-cccc
Confidence            3445667899999999999999999999999887  899999999999999999999999999999999877643 3567


Q ss_pred             HHHHHHhcCCccccccccCchhhHHHHHH--HhhhHhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHHhh
Q 022643          114 IFVGTAYSVQLPLLRWKGNSFLAAFCMVS--LNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKD  191 (294)
Q Consensus       114 ~~l~~~Ys~~~pp~rlKr~~~~~~~~~~~--~~g~l~~lg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~d  191 (294)
                      +.+.+.|+.      +||.+++.++..+.  .||.+.       ++.++.|..   .+....-+++.-..|++.++++|+
T Consensus       182 l~~v~~ypl------~kr~TY~pq~vLgltfnwGAll-------Gw~A~~g~~---~~s~~~plYls~v~Wtl~YDTIYA  245 (353)
T KOG1381|consen  182 LALVITYPL------MKRFTYWPQLVLGLTFNWGALL-------GWCALKGSL---SPSAVLPLYLSGVCWTLIYDTIYA  245 (353)
T ss_pred             cccEEEeeh------hhhcchhHHHHHhhhcchhhhh-------cchhhcCcc---ChhhhhHHHHhhhhhhhhhhhhhh
Confidence            777889995      79999888876553  344332       333455532   222334466677889999999999


Q ss_pred             cCChHhhHhcCCccchhhccHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHhhcCCCChHH
Q 022643          192 LHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNAS  271 (294)
Q Consensus       192 ~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~  271 (294)
                      +||.++|.+.|+|+.+.++|+++-.++. .+-......+...|+.+.+.|  ++| .+..+.+..+..|..++|.||+++
T Consensus       246 HQDK~dDvk~gvkSTALrfG~nTK~wl~-gf~a~~ia~La~aG~~s~q~~--pyy-~~lg~~~~~L~~~i~~vdiDnp~d  321 (353)
T KOG1381|consen  246 HQDKRDDVKIGVKSTALRFGDNTKPWLS-GFGAAQIASLAAAGIASDQTW--PYY-AALGAVAARLGSQIYKVDIDNPSD  321 (353)
T ss_pred             cccchhhhHhcchhhhhhcCCCCchHHh-hhhHHHHHHHHHhhhccCCCc--hHH-HHHHHHHHHHHhheeeeecCChHH
Confidence            9999999999999999999999555554 444455666788899999988  454 558889999999999999999999


Q ss_pred             HHHHHH-HHHHHHHH
Q 022643          272 ILSFYM-FIWKLYYA  285 (294)
Q Consensus       272 ~~~f~~-~~~~l~~~  285 (294)
                      |+++|. |+|-+.+.
T Consensus       322 C~k~f~sN~ntGli~  336 (353)
T KOG1381|consen  322 CWKKFKSNSNTGLIL  336 (353)
T ss_pred             HHHHHHhcCcchHHH
Confidence            977775 45554443

>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated

Probab=99.97  E-value=2.3e-28  Score=223.02  Aligned_cols=223  Identities=16%  Similarity=0.164  Sum_probs=158.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcccCh--hhhh--hcCCCCcccccccCHHHHHHHHHHHHHHHHHHHHH----hhhHHHHH
Q 022643           37 GLMEALVPAVLMHIYVVAINQLSDV--EVDK--VNKPYLPLASGEISMGTGIAITLASALMSLAYAVM----IRSPPFIW  108 (294)
Q Consensus        37 ~~l~~ll~~~l~~~a~~~iNd~~D~--~~D~--~n~p~Rpi~sG~is~~~a~~~~~~~~~~~l~l~~~----l~~~~~~~  108 (294)
                      ..+..+++++++|.++|.+|||+|+  |.|+  .++|+||+++|++|++|++..+..+..++++++..    .+++.. .
T Consensus        39 ~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~~~~~~r~l~~G~is~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~-~  117 (293)
T PRK06080         39 LALLALLAALLLQIATNLANDYGDYVKGTDTEDRVGPLRAIGRGGISPKQVKRAAIAFFGLAALLGLYLVAVSGWWLL-L  117 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHhccCCCcccccCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-H
Confidence            4556778999999999999999998  4675  45679999999999999998887777666555543    344333 3


Q ss_pred             HHHHHHHHHHHhcCCccccccccCchhhHHHHHHHhhhHhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHH
Q 022643          109 AVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAF  188 (294)
Q Consensus       109 ~~~~~~~l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (294)
                      ..+.+.+.++.||  .||.|+|++++ |++..+..+|.....+.+     +.+.+   ..+...++......+|+...++
T Consensus       118 ~~~~~~~~~~~Ys--~~p~~~~~~gl-ge~~~~~~~G~~~~~~~~-----~~~~~---~~~~~~~~~~l~~~l~~~~~~~  186 (293)
T PRK06080        118 LGLLCIAAAILYT--GGPKPYGYTGL-GELFVGVFFGLVIVLGTY-----YLQAG---TVDSAVFLPALPCGLLIGAVLL  186 (293)
T ss_pred             HHHHHHHHhhhhc--CCCCccCCCCc-HHHHHHHHHHHHHHHHHH-----HHhcC---CCCHHHHHHHHHHHHHHHHHHH
Confidence            3356677789999  48888888875 787776666654433322     22333   2355566666777888889999


Q ss_pred             HhhcCChHhhHhcCCccchhhccHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHhhcCC-C
Q 022643          189 IKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDL-S  267 (294)
Q Consensus       189 i~d~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~-~  267 (294)
                      +||++|+|+|++.|+||+|+++|+|+++++...+..++++..+........++   .+.+ ..+......++.+.... +
T Consensus       187 ~n~~~D~~~D~~~G~~Tl~v~lG~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~---~~ll-~ll~~p~~~~~~~~~~~~~  262 (293)
T PRK06080        187 ANNIRDIETDRENGKNTLAVRLGDKNARRLHAALLALAYLCIVLLALLGLASP---WGLL-FLLSLPLAVKAARPVLRKQ  262 (293)
T ss_pred             hcCCCcchhHHHcCCeeEEeeECcHhHHHHHHHHHHHHHHHHHHHHHHhhhhH---HHHH-HHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999998888887666555544443   2222 23334445555554432 2


Q ss_pred             ChHHHHHH
Q 022643          268 DNASILSF  275 (294)
Q Consensus       268 ~~~~~~~f  275 (294)
                      ++++....
T Consensus       263 ~~~~~~~~  270 (293)
T PRK06080        263 KPETLIPA  270 (293)
T ss_pred             CHHHHHHH
Confidence            44444333

>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed

Probab=99.97  E-value=2.1e-28  Score=221.66  Aligned_cols=169  Identities=26%  Similarity=0.344  Sum_probs=131.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhcccChhhhhhcCCCCcccccccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 022643           38 LMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVG  117 (294)
Q Consensus        38 ~l~~ll~~~l~~~a~~~iNd~~D~~~D~~n~p~Rpi~sG~is~~~a~~~~~~~~~~~l~l~~~l~~~~~~~~~~~~~~l~  117 (294)
                      .+..+++.++.++++|++|||+|+|+|++|+|+||+++|++|+++++.++.++.++++.+++..|+++.... +.+..++
T Consensus        39 ~~l~~~~~~~~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~l~~~g~~l~~~~~~~~~~~~-~~~~~~~  117 (277)
T PRK12883         39 LILIFLVVYLGCSGGNTINDYFDYEIDKINRPNRPLPRGAMSRKAALYYSLLLFAVGLALAYLINIEAFLFA-LGAYVLM  117 (277)
T ss_pred             HHHHHHHHHHHHHHHhHHHhhhhHhccccCCCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence            344567888899999999999999999999999999999999999999999999999988888887766544 4566779


Q ss_pred             HHhcCCccccccccCchhhHHHHHHHhhhHhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHHhhcCChHh
Q 022643          118 TAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDG  197 (294)
Q Consensus       118 ~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~D~e~  197 (294)
                      +.|+.     +.||++.++++.++...|..+..|+     .++ +.    .+...+.. ...++++..+++.||+||+|+
T Consensus       118 ~~Y~~-----~~k~~~~lg~~~vg~~~g~~~~~g~-----~a~-~~----~~~~~~~~-~~~fl~~~~~~~~~~~~D~e~  181 (277)
T PRK12883        118 FLYAW-----KLKPLPFIGNVVVALLTGATPIYGA-----IAV-GR----IGLAGYLA-ICAFLVNVAREIMKDIEDIEG  181 (277)
T ss_pred             HHHhh-----cccCCcchhhHHHHHHHHHHHHHHH-----HHh-cc----ccHHHHHH-HHHHHHHHHHHHHhhhhhhcc
Confidence            99995     4788888888887766554332222     122 32    23332222 234556677889999999999


Q ss_pred             hHhcCCccchhhccHHHHHHHHHHHH
Q 022643          198 DKKFGIKTLSVMLGKERVFRLSVSML  223 (294)
Q Consensus       198 D~~~G~~Tlpv~~G~~~a~~~~~~l~  223 (294)
                      |++.|+||+|+++|+|+++++.....
T Consensus       182 D~~~G~~Tlpv~~G~~~a~~~~~~~~  207 (277)
T PRK12883        182 DKAKGAKTLPIIIGKKRAAYIGAIFG  207 (277)
T ss_pred             HHHcCCcCcChHhcHHHHHHHHHHHH
Confidence            99999999999999999998776543

>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=99.96  E-value=3.3e-27  Score=216.96  Aligned_cols=213  Identities=15%  Similarity=0.070  Sum_probs=151.9

Q ss_pred             hhHHHHHHHHHHHHHhhhhccccCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcccChhhhhhcC----CCCcccccccCH
Q 022643            5 LFFVFMYQIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK----PYLPLASGEISM   80 (294)
Q Consensus         5 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~l~~~a~~~iNd~~D~~~D~~n~----p~Rpi~sG~is~   80 (294)
                      ++.++....+|...+.    ....++++   ...+.++++++++|.++|.+|||+|.+.|+.++    |+|++++|.+|+
T Consensus        15 l~~s~~pvllG~a~a~----~~~~~~~~---~~~ll~ll~~~~~~~~~N~~NDy~D~~~g~D~~~~~~~~~~i~~~~ls~   87 (317)
T PRK13387         15 KIASFFPVILGTLFSL----YVAKIFDW---LLFLAFMVAMLAFDIATTAINNYMDFKKALDTADYVGIGNGIGQHGLKP   87 (317)
T ss_pred             HHHHHHHHHHHHHHHH----HhCCCccH---HHHHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccccCCcchhccCCCCH
Confidence            3444555555553332    12223443   245667888899999999999999988766654    589999999999


Q ss_pred             HHHHHHHHHHHHHHHH----HHHHhhhHHHHHHHHHHHHHHHHhcCCccccccccCchhhHHHHHHHhhhHhHHHHHHHH
Q 022643           81 GTGIAITLASALMSLA----YAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHI  156 (294)
Q Consensus        81 ~~a~~~~~~~~~~~l~----l~~~l~~~~~~~~~~~~~~l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~  156 (294)
                      |+++..+..+..++.+    +.+..|++ .+...+++.+.++.||  .||+++||++ +|++.++...|.....+.+   
T Consensus        88 ~~v~~~~~~~~~ia~~~Gl~L~~~~g~~-~l~igl~g~~~~~~Yt--~gP~~l~y~g-LGe~~v~i~~G~~~v~g~~---  160 (317)
T PRK13387         88 RNVLTVILLMYVVAAILGVYLCMNTSWL-LLVIGLICFAIGILYT--GGPLPLSRMP-LGEIFSGLTMGFGIFLLAV---  160 (317)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcHH-HHHHHHHHHHHhhhhc--CCCcccccCc-cHHHHHHHHHHHHHHHHHH---
Confidence            9999988877777666    44555643 4444567888899999  5899999999 5888877666655444432   


Q ss_pred             HHHhhcCCccccchHHH--------------------HHHHHHHHHHHHHHHHhhcCChHhhHhcCCccchhhccHHHHH
Q 022643          157 QKYVLGRPLEIFTRPLM--------------------FATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVF  216 (294)
Q Consensus       157 ~~~~~g~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~i~d~~D~e~D~~~G~~Tlpv~~G~~~a~  216 (294)
                        +++.+.   .++..+                    +......+.+...+++||++|+|+|++.|+||+|+++|+|+++
T Consensus       161 --yv~t~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v~lG~~~a~  235 (317)
T PRK13387        161 --YINTNT---ITIESLLFQGEMFTIQGNLIAIIAIGVISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVYYIGREKGV  235 (317)
T ss_pred             --HHhcCC---CchHHHHhcccchhhcchhHHHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCeeeeeeEcHHhHH
Confidence              233221   121111                    1344455666677999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhh
Q 022643          217 RLSVSMLSIAYGAAVVVGAS  236 (294)
Q Consensus       217 ~~~~~l~~~~~~~~~~~~~~  236 (294)
                      ++...+...+|+..+.....
T Consensus       236 ~l~~~l~~~a~l~~~~~v~~  255 (317)
T PRK13387        236 VLFAILFYASYLAIAVIVLM  255 (317)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99999888888865544333

>PRK13362 protoheme IX farnesyltransferase; Provisional

Probab=99.96  E-value=3.6e-27  Score=215.62  Aligned_cols=230  Identities=14%  Similarity=0.096  Sum_probs=156.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhcccChhhhhhcCC--CCcccccccCHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHH
Q 022643           38 LMEALVPAVLMHIYVVAINQLSDVEVDKVNKP--YLPLASGEISMGTGIAITLASALMSLAYAV-MIRSPPFIWAVIAWI  114 (294)
Q Consensus        38 ~l~~ll~~~l~~~a~~~iNd~~D~~~D~~n~p--~Rpi~sG~is~~~a~~~~~~~~~~~l~l~~-~l~~~~~~~~~~~~~  114 (294)
                      .+.++++..+.++++|++|||+|+|+|++++|  +||+|+|++|++||+.++.++..+++.++. ..|+.......+...
T Consensus        49 ~~~~~lg~~l~~aaa~~~Nd~~D~~iD~~~~Rt~~RPlpsG~is~~~A~~~~~~l~~~g~~ll~~~~n~~~~~l~~~~~~  128 (306)
T PRK13362         49 MLAAVIGLSLVVASGCALNNCIDRDIDAKMQRTRNRVTVTGEISLGEALGFGLALGVAGFGLLAAFTNPLAALFAAFGYV  128 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHhChHHhCcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            44567888999999999999999999997654  899999999999999999999888887654 457655433323334


Q ss_pred             HHHHHhcCCccccccccCchhhHHHHHHHhhhHhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHHhhcCC
Q 022643          115 FVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHD  194 (294)
Q Consensus       115 ~l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~D  194 (294)
                      ...+.||.     ++||++..+++..++.++..+..|     +.++.|.    .+...+++....++|+..++...+++|
T Consensus       129 ~~~~~Yt~-----~lKr~t~~~~~vgg~~ga~p~l~G-----~~a~~g~----~~~~~~~l~~~~~~W~~~h~~~~ai~~  194 (306)
T PRK13362        129 VYVGVYSL-----YLKRNSVYGTLVGSLSGAMPPVVG-----YCAVTGQ----FDAGALILLLMFSLWQMPHSYAIAIFR  194 (306)
T ss_pred             HHHHHHhH-----HHhccCcHhHHHHHHHHHHHHHHH-----HHHHcCC----CcHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45779984     489999988887665544333333     2233332    355566667778899999999999999


Q ss_pred             hHhhHhcCCccchhhccHHHHHHHHHHHHHHHHHHHHHHHhhcc-hhhHHHHHHHHHHHHHHHHHHHHhh-c--CCCC-h
Q 022643          195 VDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSP-FLANKLITIIGHGILASIFWLRVRA-V--DLSD-N  269 (294)
Q Consensus       195 ~e~D~~~G~~Tlpv~~G~~~a~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~-~--d~~~-~  269 (294)
                      +|||+++|+||+|+++|+|++++.......+... ........+ .++   .|.....+....+++...+ .  +.+| +
T Consensus       195 ~~Dy~~aG~~~lpv~~G~~~t~~~~~~~~~~~~~-~s~l~~~~g~~g~---~y~~~~~~~~~~~l~~a~~~~~~~~~~~~  270 (306)
T PRK13362        195 FNDYAAAGIPVLPVARGIAKTKLHIVLYILVFAL-VTALLPLAGYTGI---GYLAVAAATSLWWLAMALKGYRHAVDDTV  270 (306)
T ss_pred             HhhHHHCCCeeeceecChHHHHHHHHHHHHHHHH-HHHHHHHHccccH---HHHHHHHHHHHHHHHHHHHHHhccCCchH
Confidence            9999999999999999999888765543322222 122222221 222   3333333433434433332 2  2233 3


Q ss_pred             HHHHHHHHHHHHHHHH
Q 022643          270 ASILSFYMFIWKLYYA  285 (294)
Q Consensus       270 ~~~~~f~~~~~~l~~~  285 (294)
                      .+.+-|..+++++...
T Consensus       271 ~a~~~f~~S~~yl~~~  286 (306)
T PRK13362        271 WARQLFGFSILTITAL  286 (306)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3566788888887664

>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]

Probab=99.96  E-value=1.6e-27  Score=212.47  Aligned_cols=222  Identities=23%  Similarity=0.310  Sum_probs=152.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcccChhhhhh--cCCCCcccccccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 022643           36 TGLMEALVPAVLMHIYVVAINQLSDVEVDKV--NKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAW  113 (294)
Q Consensus        36 ~~~l~~ll~~~l~~~a~~~iNd~~D~~~D~~--n~p~Rpi~sG~is~~~a~~~~~~~~~~~l~l~~~l~~~~~~~~~~~~  113 (294)
                      .......+++++.+.++|.+||+.|+|+|+.  |||+||+++|+++++++...+.++.++++.+++..++..+... +..
T Consensus        23 ~~~~~~~l~~~~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~~~~~~~~~~~~~~l~l~l~~~~~~~~~~~~-~~~  101 (257)
T PF01040_consen   23 PIFLLGLLAVFLLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRISPRQALIFALILLLLGLLLALLLGPWFLLIL-LLG  101 (257)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhChhhhhcCcccccccCcchhHHHHhHHHHHHHHHHHHHHHHHHHHhcCchhHHHH-HHH
Confidence            3444556677799999999999999999999  8999999999999999999999999999988888886655444 455


Q ss_pred             HHHHHHhcCCccccccccCchhhHHHHHHHhhhHhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHHhhcC
Q 022643          114 IFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLH  193 (294)
Q Consensus       114 ~~l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~  193 (294)
                      .+.++.||   ||+|+||+++.+++..+..++.....+++      ..+++   .+.+.+.......++.......+|++
T Consensus       102 ~~~~~~Ys---~~~~lk~~~~~~~~~~~~~~~~~~~~~~~------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (257)
T PF01040_consen  102 FLLGLLYS---PPLRLKRRPLWGELVVALVFGLLILLGAY------AAGGD---PPPPPFLLAIFFFLLIFAIMFFNDIR  169 (257)
T ss_pred             HHHHHHHh---hhhhhcceeccchhhHHHhhhHhhhhhhh------hcCCc---ccHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            66679999   78899999998998887766544433322      12332   23333343344455666667788999


Q ss_pred             ChHhhHhcCCccchhhccHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHH
Q 022643          194 DVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASIL  273 (294)
Q Consensus       194 D~e~D~~~G~~Tlpv~~G~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~~  273 (294)
                      |+|+|++.|+||+|+++|+|++++...  ....+.. ..........+   .........+..+....+..+.+++++++
T Consensus       170 D~~~D~~~g~~Tl~v~~G~~~~~~~~~--~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  243 (257)
T PF01040_consen  170 DIEGDRKAGRRTLPVLLGEKKARYLLL--TAGLLLF-LLLLLGLFSPW---PLIIALLLAALALIFILWFFRKRDPKKPE  243 (257)
T ss_pred             hHHHHHHcCCcchHHHHHHHHHHHHHH--HHHHHHH-HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhcCCcchHH
Confidence            999999999999999999999988211  1111111 00111111111   22333344455555555666655555555


Q ss_pred             HHH
Q 022643          274 SFY  276 (294)
Q Consensus       274 ~f~  276 (294)
                      +++
T Consensus       244 ~~~  246 (257)
T PF01040_consen  244 RLF  246 (257)
T ss_pred             HHH
Confidence            555

These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane

>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase

Probab=99.96  E-value=2.6e-26  Score=207.89  Aligned_cols=196  Identities=18%  Similarity=0.176  Sum_probs=147.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccChhh--hhhc--CCCCcccccccCHHHHHHHHHHHHHHHHHHHH----Hhhh---
Q 022643           35 FTGLMEALVPAVLMHIYVVAINQLSDVEV--DKVN--KPYLPLASGEISMGTGIAITLASALMSLAYAV----MIRS---  103 (294)
Q Consensus        35 l~~~l~~ll~~~l~~~a~~~iNd~~D~~~--D~~n--~p~Rpi~sG~is~~~a~~~~~~~~~~~l~l~~----~l~~---  103 (294)
                      ....++++++++++|.++|.+|||+|.+.  |+.+  +|.|++++|.+++|+++..+..+..++..++.    ..++   
T Consensus        27 ~~~~ll~~~~~~~~q~~~N~~NDy~D~~~G~D~~~~~~~~r~i~~g~is~~~v~~~~~~~~~~a~~~Gi~l~~~~~~~~~  106 (284)
T TIGR00751        27 WLVALLALATAVLLQILSNYANDYGDGIKGSDTDDRIGPLRGVQKGLITPREVKTALITSVALGALSGLVLALLAAPNLS  106 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCChhhccCCcchhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccchh
Confidence            44456778899999999999999999853  5432  47899999999999999988777766655543    3342   


Q ss_pred             --HHHHHHHHHHHHHHHHhcCCccccccccCchhhHHHHHHHhhhHhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHH
Q 022643          104 --PPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISC  181 (294)
Q Consensus       104 --~~~~~~~~~~~~l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  181 (294)
                        +++....+.+.+.++.||  .||+|+|++++ |++.++..+|.+...+.+     +++.+.   +++..++......+
T Consensus       107 ~~~~~l~lg~~~~~~~~~Yt--~gP~~l~y~gL-GE~~v~i~~G~l~v~g~~-----yvq~~~---~~~~~ll~sl~~g~  175 (284)
T TIGR00751       107 DLFWFIALGALCIAAAITYT--VGSKPYGYAGL-GDISVLVFFGPLAVLGTQ-----YLQAHR---VDWVGILPAVATGL  175 (284)
T ss_pred             hhHHHHHHHHHHHHHhHhhc--CCCCccccCch-HHHHHHHHHHHHHHHHHH-----HHhcCC---CCHHHHHHHHHHHH
Confidence              134344467778899999  58999999996 788877777766554433     344443   45555555555667


Q ss_pred             HHHHHHHHhhcCChHhhHhcCCccchhhccHHHHHHHHHHHHHHHHHHHHHHHhhcchhh
Q 022643          182 FCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLA  241 (294)
Q Consensus       182 ~~~~~~~i~d~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~  241 (294)
                      .+.+++++||++|+|+|++.|+||+|+++|+|+++++...+...+|...+........++
T Consensus       176 l~~~il~~Nn~~D~~~D~~~Gk~Tl~v~lG~~~a~~l~~~l~~~ay~~~~~~~~~~~~p~  235 (284)
T TIGR00751       176 LACAVLNINNLRDIPTDARAGKNTLAVRLGDARTRMYHQGLLAVAGVCTFVFMLATPISW  235 (284)
T ss_pred             HHHHHHHHcCcccchhHHHcCCEeehhhcchHhHHHHHHHHHHHHHHHHHHHHHHhhchH
Confidence            777889999999999999999999999999999999999988888876655544333333

This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.

>PRK12871 ubiA prenyltransferase; Reviewed

Probab=99.96  E-value=1.6e-26  Score=210.48  Aligned_cols=215  Identities=12%  Similarity=0.097  Sum_probs=144.7

Q ss_pred             HHHHHHHHHHHHHhhcccChhhhhhc---------C--CCCcccccccCHHHHHHHHHHHHHHHHHHHHHhhhH---HHH
Q 022643           42 LVPAVLMHIYVVAINQLSDVEVDKVN---------K--PYLPLASGEISMGTGIAITLASALMSLAYAVMIRSP---PFI  107 (294)
Q Consensus        42 ll~~~l~~~a~~~iNd~~D~~~D~~n---------~--p~Rpi~sG~is~~~a~~~~~~~~~~~l~l~~~l~~~---~~~  107 (294)
                      .++..++..++|++|||.|+|.|++|         |  ++||+++|++|++|++.+..++.++++.++..++..   ..+
T Consensus        47 ~l~~~l~~~ag~~iND~~D~~~D~~~v~rtm~r~~~P~~~Rpl~sG~is~~~a~~~~i~l~~i~~~l~~~l~~~~~~~~~  126 (297)
T PRK12871         47 ALIGLFGFEAGFVLNDYVDRKRDRLDVENTLTRYWRPFKERPIPSGKLSSKNAFALFILLAAVTSALILTLPYPNSLYVF  126 (297)
T ss_pred             HHHHHHHHHHHHHHhhHHHHhcCcchHhhhhhccccCCCCCccCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444455778999999999999865         3  489999999999999999999988888887765432   122


Q ss_pred             HHHHHHHHHHHHhcCCccccccccC---chhhHHHHHHHhhhHhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHHHHH
Q 022643          108 WAVIAWIFVGTAYSVQLPLLRWKGN---SFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCV  184 (294)
Q Consensus       108 ~~~~~~~~l~~~Ys~~~pp~rlKr~---~~~~~~~~~~~~g~l~~lg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  184 (294)
                      ...+.+.++++.|+.      .||.   |. +.+..+...+..+..+      ....|.    .+...++.....++|+.
T Consensus       127 ~l~~~~~~~~~~Y~~------~kr~~~~p~-~~l~G~~~~~~~~~~g------~~~~g~----~~~~~~ll~~~~~~w~~  189 (297)
T PRK12871        127 VIMLYSYGIEAFYQV------KKRNQKYPV-AQLLGRTDFTLFPAAG------YLCYGQ----PDMTALLYMVFFYPWTM  189 (297)
T ss_pred             HHHHHHHHHHHHHhc------ccccccccH-HHHHHHHHHHHHHHHH------HHHhCC----CcHHHHHHHHHHHHHHH
Confidence            222455567788884      2332   42 1222211112111111      122332    34455555567789999


Q ss_pred             HHHHHhhcCChHhhHhcCCccchhhccHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHhhc
Q 022643          185 VIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAV  264 (294)
Q Consensus       185 ~~~~i~d~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  264 (294)
                      +++++||++|+|||++.|+||+|+++|+|++++....+..+...  ...+.....++  ..+.....+.+..+.+|.+..
T Consensus       190 ~~~~~~a~~D~e~D~~~G~~Tlpv~~G~~~t~~~i~~~~~l~~l--~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~  265 (297)
T PRK12871        190 AHLGLNDFIDLENDRARGMKSIAVLYGMKGTMYWVTGFTALHFL--AAIFFLRELGP--IALYGFLAGFVLLAGANLYLW  265 (297)
T ss_pred             HHHHHHHHhhhhhHHHcCCeeeeeeechHHHHHHHHHHHHHHHH--HHHHHHHHhhH--HHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999998776654434433  22233344443  333344467778888999999


Q ss_pred             CCCChHHHHHHHH
Q 022643          265 DLSDNASILSFYM  277 (294)
Q Consensus       265 d~~~~~~~~~f~~  277 (294)
                      +.+|++.|-+-|.
T Consensus       266 ~~~~~~~~~~~f~  278 (297)
T PRK12871        266 KEKSQDAGMKILP  278 (297)
T ss_pred             cCCCHHHHHHHHH
Confidence            9999998866554

>PRK12872 ubiA prenyltransferase; Reviewed

Probab=99.96  E-value=4.4e-27  Score=213.77  Aligned_cols=186  Identities=22%  Similarity=0.245  Sum_probs=131.1

Q ss_pred             HHHHHHHHHHHHHHHHhhcccChhhhhhcCCCCcccccccCHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHH
Q 022643           39 MEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAV-MIRSPPFIWAVIAWIFVG  117 (294)
Q Consensus        39 l~~ll~~~l~~~a~~~iNd~~D~~~D~~n~p~Rpi~sG~is~~~a~~~~~~~~~~~l~l~~-~l~~~~~~~~~~~~~~l~  117 (294)
                      ....++.++.+.++|.+||+.|+|+|++|+|+||.++++...+.+.....+...++..+.. ..|++.+.. .+++.+++
T Consensus        39 ~~~~~~~~~~~~~~~~~N~~~D~~~D~~n~~~R~~~s~~~~~~~~~~l~~i~~~~~~~l~~~~~~~~~~~~-~~~~~~~~  117 (285)
T PRK12872         39 WLLLLITFLIAAAVYIINYLTDLEEDIINKPERVVFSETKAYGLFLLLNVLGLYLGAYLLAVIGGPKFALI-FIIPLILG  117 (285)
T ss_pred             HHHHHHHHHHHHHHHHhhhhcCCchhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH-HHHHHHHH
Confidence            3456788899999999999999999999999999885544444333333333344444332 235544433 35666779


Q ss_pred             HHhcCCcccc-ccccCchhhHHHHHHHhhhHhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHHhhcCChH
Q 022643          118 TAYSVQLPLL-RWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVD  196 (294)
Q Consensus       118 ~~Ys~~~pp~-rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~D~e  196 (294)
                      +.||.  ||. |+||.|.++++.++..+|..+..+.+     +..+.   .++...+......+++...++.++|++|+|
T Consensus       118 ~~Ys~--~~~~~lk~~p~~~~~~vg~~~g~~~~~~~~-----~~~~~---~~~~~~~~~~~~~fl~~~~~~~~~d~~D~e  187 (285)
T PRK12872        118 ILYSV--FFKRRLKRIPLFKNLVVSLLWALSPLILGV-----YYYQL---TIFSLLLLYAVFIFLKSFIREIVFDIKDIE  187 (285)
T ss_pred             HHHhC--hhHHHHhhhhhHhhHHHHHHHHHHHHHHHH-----Hhccc---ccchHHHHHHHHHHHHHHHHHHHHhcccch
Confidence            99995  555 58999999999988877754433221     12222   123334444445566677889999999999


Q ss_pred             hhHhcCCccchhhccHHHHHHHHHHHHHHHHHHHHHHHh
Q 022643          197 GDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGA  235 (294)
Q Consensus       197 ~D~~~G~~Tlpv~~G~~~a~~~~~~l~~~~~~~~~~~~~  235 (294)
                      +|+++|+||+|+++|+|++++....+..+++..++....
T Consensus       188 ~D~~~G~~Tlpv~lG~~~t~~~~~~~~~~~~~~~~~~~~  226 (285)
T PRK12872        188 GDRKSGLKTLPIVLGKERTLKFLLILNLLFLILLILGVY  226 (285)
T ss_pred             hHHHcCCcccchhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999998888777766554433

>PRK13591 ubiA prenyltransferase; Provisional

Probab=99.95  E-value=5.1e-26  Score=205.44  Aligned_cols=177  Identities=21%  Similarity=0.190  Sum_probs=129.9

Q ss_pred             HHHHHHHHHHHHHhhcccChhhhhhcCCCCcccccccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhc
Q 022643           42 LVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYS  121 (294)
Q Consensus        42 ll~~~l~~~a~~~iNd~~D~~~D~~n~p~Rpi~sG~is~~~a~~~~~~~~~~~l~l~~~l~~~~~~~~~~~~~~l~~~Ys  121 (294)
                      .+++.+...++|++|||+|+|+|++|+|+||.+    +++.+..++.+..++|+.+++..|++ . +. +++.+.++.||
T Consensus        64 ~~~~~L~~~s~~~iNd~~D~eiD~IN~P~r~~~----s~~~a~~ls~la~llGl~La~~~g~~-l-l~-ll~~l~g~lYS  136 (307)
T PRK13591         64 CIAGGLIIYSVYTLDRALDSEEDAVNRSELIGS----NKKIGLLVSLLAFLLGTYILAMDGML-L-LA-FLPFITGYLYS  136 (307)
T ss_pred             HHHHHHHHHHHHHHhhhccchhhhccCcccccc----CHHHHHHHHHHHHHHHHHHHHHHhHH-H-HH-HHHHHHHHHhc
Confidence            345567889999999999999999999999987    78899999999999999999888853 2 23 56777799999


Q ss_pred             CC----ccccccccCchhhHHHHHHHhhhHhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHHhhcCChHh
Q 022643          122 VQ----LPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDG  197 (294)
Q Consensus       122 ~~----~pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~D~e~  197 (294)
                      .+    ..|+|+|+.+.+||+.++..+|.....+   .+ .. .+    .. ........+...-..+++.+||++|+||
T Consensus       137 ~Glk~~P~plklK~~~glGnl~V~i~~G~~i~g~---~g-~~-~~----~~-~~~~~i~l~~~~~l~~~~iindirDiEG  206 (307)
T PRK13591        137 KGIKIGKFALKLKGGLGVKNIVVGITWGGFIAGI---AG-SY-CG----SL-IPVGLIFLFFGVKLFINSCVYDFKDVKG  206 (307)
T ss_pred             CCCCCCCccccccCCCchhHHHHHHHHHHHHHHH---HH-hh-hh----hH-HHHHHHHHHHHHHHHHHHHHHHhhhhHh
Confidence            64    1245889999999999988777533211   01 00 11    11 1111111111112245678999999999


Q ss_pred             hHhcCCccchhhccHHHHHHHHHHHHHHHHHHHHHHHh
Q 022643          198 DKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGA  235 (294)
Q Consensus       198 D~~~G~~Tlpv~~G~~~a~~~~~~l~~~~~~~~~~~~~  235 (294)
                      |++.|+||+|+++|+++++++...+..++++.++....
T Consensus       207 Dr~~G~kTLPV~lG~~~A~~l~~~l~~~~~l~li~~~~  244 (307)
T PRK13591        207 DTLAGIKTLPVSLGEQKTRNLLLGIHLFSHLVLGIALI  244 (307)
T ss_pred             HHHcCCeeEEEEECHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999888888776554433

>PLN02776 prenyltransferase

Probab=99.95  E-value=3e-25  Score=203.79  Aligned_cols=232  Identities=15%  Similarity=0.009  Sum_probs=159.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcccChhhhhhcCC--CCcccccccCHHHHHHHHHHHHHHHHHH-HHHhhhHHHHHHHHHH
Q 022643           37 GLMEALVPAVLMHIYVVAINQLSDVEVDKVNKP--YLPLASGEISMGTGIAITLASALMSLAY-AVMIRSPPFIWAVIAW  113 (294)
Q Consensus        37 ~~l~~ll~~~l~~~a~~~iNd~~D~~~D~~n~p--~Rpi~sG~is~~~a~~~~~~~~~~~l~l-~~~l~~~~~~~~~~~~  113 (294)
                      .++..+++.+++++++|++||+.|+|+|++|+|  +||+|+|++|+++|+.+++++.++++.+ .+.+|+.+..++....
T Consensus        30 ~l~~~~lg~~l~~aaa~~~N~i~DrdiD~~m~RT~~RPLpsGris~~~A~~~~~~l~~~g~~~l~~~~n~l~~~l~~~~~  109 (341)
T PLN02776         30 GLGWTCAGTMLCAASANTLNQVFEVKNDSKMKRTMRRPLPSGRISVPHAVAWAVVVGAAGVALLAYKTNMLTAGLGAGNI  109 (341)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHhhhhcccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            455678899999999999999999999999875  9999999999999999999999888854 4567877665543333


Q ss_pred             HHHHHHhcCCccccccccCchhhHHHHHHHhhhHhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHHhhcC
Q 022643          114 IFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLH  193 (294)
Q Consensus       114 ~~l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~  193 (294)
                      ++....||.      +||++.+. ..++...|.+.++.    ++.++.|.    ++...+++...+++|+..+.....++
T Consensus       110 ~ly~~vYt~------lKR~t~~~-~~lG~~~Ga~ppL~----Gw~Avtg~----~~~~~~~Lf~~~~~Wq~pHf~~la~~  174 (341)
T PLN02776        110 LLYAFVYTP------LKQIHPAN-TWVGAVVGAIPPLM----GWAAASGQ----LDAGAMVLAAALYFWQMPHFMALAYM  174 (341)
T ss_pred             HHHHHHHHh------HccCCchh-HHHHHHHHHHHHHH----HHHHHcCC----CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444678984      79998764 44444434322222    33345453    45666677778899999888888999


Q ss_pred             ChHhhHhcCCccchhhc--cHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHhhcCCCCh-H
Q 022643          194 DVDGDKKFGIKTLSVML--GKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDN-A  270 (294)
Q Consensus       194 D~e~D~~~G~~Tlpv~~--G~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~-~  270 (294)
                      |+|||++.|++++|+.-  |+++++.+....+.+....++..+... .++  .++..+..+.+..+.+.++..+.+|+ .
T Consensus       175 ~~dDy~~ag~pmlpv~~~~g~~ta~~i~~~~~~l~~~~ll~~~~g~-~~~--~~~~~a~~l~~~~l~~~~~~~~~~~~~~  251 (341)
T PLN02776        175 CRDDYAAGGYRMLSLADATGRRTALVALRNCLYLAPLGFLAYDWGV-TSS--PFALEAALLTAYLAASAASFYREPTNAN  251 (341)
T ss_pred             hHHHHHhCCCcccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHh-hhH--HHHHHHHHHHHHHHHHHHHHhcCCChHH
Confidence            99999999999999976  455555544333322222222211111 122  35556666666666677776655444 4


Q ss_pred             HHHHHHHHHHHHHHHH
Q 022643          271 SILSFYMFIWKLYYAE  286 (294)
Q Consensus       271 ~~~~f~~~~~~l~~~~  286 (294)
                      ..+.|+.+++++...-
T Consensus       252 ar~~F~~Sl~yL~~l~  267 (341)
T PLN02776        252 ARKMFHGSLLYLPAFM  267 (341)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            5677888888886543

>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=99.95  E-value=1.3e-24  Score=198.13  Aligned_cols=216  Identities=16%  Similarity=0.123  Sum_probs=153.3

Q ss_pred             hhHHHHHHHHHHHHHhhhhccccCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcccChh--hhhhcCCCCcccccccCHHH
Q 022643            5 LFFVFMYQIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVE--VDKVNKPYLPLASGEISMGT   82 (294)
Q Consensus         5 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~l~~~a~~~iNd~~D~~--~D~~n~p~Rpi~sG~is~~~   82 (294)
                      ++.++....+|...++    ....+++   ....++++++++++|.++|.+|||+|++  .|+. +++ ...++..++++
T Consensus        24 l~asl~pv~lG~a~a~----~~~~~f~---~~~~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~-~~~-~~~~~~~~~~~   94 (304)
T PRK07419         24 YSVAIMPILVGTAWAL----GETGVFR---LDQFITFLLAAILILAWENLSNDVFDADTGIDKN-KFH-SVVNLTGNKSL   94 (304)
T ss_pred             HHHHHHHHHHHHHHHH----HcCCCcc---HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc-ccc-CcccccCcHHH
Confidence            3444455555553332    1112345   3345667889999999999999999987  6774 332 23455557899


Q ss_pred             HHHHHHHHHHHHHHHH----HHhhhHHHHHHHHHHHHHHHHhcCCccccccccCchhhHHHHHHHhhhHhHHHHHHHHHH
Q 022643           83 GIAITLASALMSLAYA----VMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQK  158 (294)
Q Consensus        83 a~~~~~~~~~~~l~l~----~~l~~~~~~~~~~~~~~l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~~  158 (294)
                      .+..+..+..+++.++    +..| |+++...+++.+.++.||  .||+|+|++++ |++.++..+|.++..+.+     
T Consensus        95 v~~~~~~~~~~a~~~Gl~L~~~~g-~~~l~ig~~g~~~~~~YT--~gP~~l~y~gL-GE~~v~l~~G~l~v~g~~-----  165 (304)
T PRK07419         95 VFWLANLFLLLGLLGILAIALQSD-WTVLGLVLLCCFLGYLYQ--GPPFRLGYQGL-GEPLCFLAFGPLAVAAAL-----  165 (304)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhc-HHHHHHHHHHHHHhhecc--CCCcccCCCCc-hHHHHHHHHHHHHHHHHH-----
Confidence            9888777766665554    3344 444445567888899999  58999999996 888877777766655443     


Q ss_pred             HhhcCCccccchHHHHHHHHHHHHHHHHHHHhhcCChHhhHhcCCccchhhccHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 022643          159 YVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSP  238 (294)
Q Consensus       159 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~l~~~~~~~~~~~~~~~~  238 (294)
                      +++.+   .++...+.......+.+.+.+.+||++|+|+|++.|+||+|+++|+|++++++..+...+|...+.......
T Consensus       166 yv~t~---~~~~~~~~~sl~~gll~~~IL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~ay~~~i~~v~~g~  242 (304)
T PRK07419        166 YSQTP---SWSLIPLAASIILGLATSLILFCSHFHQVEDDLAAGKRSPIVRLGTKRGAQLLPWIVGLIYALELLPVLLGF  242 (304)
T ss_pred             HHhcC---CCCHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHcCCcceeeeechHhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            34444   345555565566677777889999999999999999999999999999999999988888887665544433


Q ss_pred             hhh
Q 022643          239 FLA  241 (294)
Q Consensus       239 ~~~  241 (294)
                      .+|
T Consensus       243 ~p~  245 (304)
T PRK07419        243 WPW  245 (304)
T ss_pred             hHH
Confidence            444

>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase

Probab=99.94  E-value=5.1e-24  Score=193.05  Aligned_cols=216  Identities=15%  Similarity=0.113  Sum_probs=150.7

Q ss_pred             hhHHHHHHHHHHHHHhhhhccccCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcccChhh--hhhcCCCCcccccccCHHH
Q 022643            5 LFFVFMYQIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEV--DKVNKPYLPLASGEISMGT   82 (294)
Q Consensus         5 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~l~~~a~~~iNd~~D~~~--D~~n~p~Rpi~sG~is~~~   82 (294)
                      ++.++....+|...++    ...+++++.   ..+++++++++.|.++|.+|||+|.+.  |+.+.  ....++..++++
T Consensus        11 l~~s~~pv~lG~alA~----~~~~~f~~~---~~ll~li~~l~~q~~~N~~Ndy~D~~~G~D~~~~--~~~~~~~~~~~~   81 (285)
T TIGR02235        11 YSVAVMPILVGTAVAW----GQGGVFHLD---RFALFLIAAILILAWINLTNDVFDSDTGIDRFKL--HSIVNLTGSRSL   81 (285)
T ss_pred             HHHHHHHHHHHHHHHH----HcCCCcCHH---HHHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccc--CCcccccCcHHH
Confidence            3444555555553332    122234533   445678899999999999999999874  76432  122233346788


Q ss_pred             HHHHHHHHHHHHHHHH----HHhhhHHHHHHHHHHHHHHHHhcCCccccccccCchhhHHHHHHHhhhHhHHHHHHHHHH
Q 022643           83 GIAITLASALMSLAYA----VMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQK  158 (294)
Q Consensus        83 a~~~~~~~~~~~l~l~----~~l~~~~~~~~~~~~~~l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~~  158 (294)
                      .+..+..+..++..++    +..+ |+++.....+.+.++.||  .||+++|++++ |++.++..+|.++..+.+     
T Consensus        82 v~~~~~~~~~ia~~~g~~L~~~~~-~~~l~lg~~g~~~~~~Yt--~gP~~l~y~gL-GE~~v~l~~G~l~v~g~~-----  152 (285)
T TIGR02235        82 VFWLANFFLLIGLVGIAALSWRWQ-ITVLALVGLCCFLGYLYQ--GPPFRLGYQGL-GEPICWLCFGPLAIAAAL-----  152 (285)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHhhc--CCCcccCCCCc-cHHHHHHHHHHHHHHHHH-----
Confidence            8777666665555444    3334 444444567888899999  58999999997 888887777766654433     


Q ss_pred             HhhcCCccccchHHHHHHHHHHHHHHHHHHHhhcCChHhhHhcCCccchhhccHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 022643          159 YVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSP  238 (294)
Q Consensus       159 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~l~~~~~~~~~~~~~~~~  238 (294)
                      +++.+   .+++..++......+.+.+..++||+||+|+|++.|+||+|+++|+|+++++...+...+|+..+.......
T Consensus       153 yvqt~---~~~~~~~l~sl~~gl~~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~~v~~~~  229 (285)
T TIGR02235       153 YAQSQ---SFSLIPWKASILVGLATTLILFCSHFHQVEDDLAHGKRSPVVRLGTKLAAKIVPWVISLSYVVLLIAVIGGF  229 (285)
T ss_pred             HHhCC---cCcHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCcceeheecHHhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            34444   356666666666777788889999999999999999999999999999999999998888887655544433


Q ss_pred             hhh
Q 022643          239 FLA  241 (294)
Q Consensus       239 ~~~  241 (294)
                      .+|
T Consensus       230 ~p~  232 (285)
T TIGR02235       230 LPW  232 (285)
T ss_pred             hHH
Confidence            334

This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.

>PLN02922 prenyltransferase

Probab=99.94  E-value=2.1e-24  Score=197.92  Aligned_cols=219  Identities=19%  Similarity=0.214  Sum_probs=149.3

Q ss_pred             hhHHHHHHHHHHHHHhhhhccccCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcccChh--hhhhcCCCCcccccccCHHH
Q 022643            5 LFFVFMYQIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVE--VDKVNKPYLPLASGEISMGT   82 (294)
Q Consensus         5 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~l~~~a~~~iNd~~D~~--~D~~n~p~Rpi~sG~is~~~   82 (294)
                      ++.++...++|...+.    ....+++   +...++++++++++|.++|.+|||+|.+  .|+.++..+.-..|  |+++
T Consensus        27 l~~s~~pv~lG~a~A~----~~~g~f~---~~~~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~~~~~~~~~~~--s~~~   97 (315)
T PLN02922         27 YSVALVPLTVGAAAAY----LQTGLFD---ARRYGTLLLSSVLVITWLNLSNDAYDADTGVDKNKKESVVNLVG--SRRG   97 (315)
T ss_pred             HHHHHHHHHHHHHHHH----HcCCCcc---HHHHHHHHHHHHHHHHHHHHHhhhhHhccCcCcccCCCCCCccc--CHHH
Confidence            3444555555553332    1112344   3345678899999999999999999976  57644322112233  8999


Q ss_pred             HHHHHHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHHHHhcCCccccccccCchhhHHHHHHHhhhHhHHHHHHHHHH
Q 022643           83 GIAITLASALMSLAYAVMI----RSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQK  158 (294)
Q Consensus        83 a~~~~~~~~~~~l~l~~~l----~~~~~~~~~~~~~~l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~~  158 (294)
                      .+..+..+.++++...+.+    +.|.+++.++++.+.++.||  .||+|+|++++ |++.++..+|.++..+.+.    
T Consensus        98 v~~~~~~~~~la~~g~~ll~~~~~~~~~l~iG~~g~~~~~~Yt--~gP~pl~y~gL-GE~~v~i~fG~l~v~g~y~----  170 (315)
T PLN02922         98 VLAAAIGCLALGAAGLVWASLVAGNIRVILLLAAAILCGYVYQ--CPPFRLSYKGL-GEPLCFAAFGPLATTAFYL----  170 (315)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHh--cCCcccccCcc-hHHHHHHHHHHHHHHHHHH----
Confidence            9888777766665322221    23445555568888899999  58999999997 7777776667665555443    


Q ss_pred             HhhcC-----Ccc--ccchHHHHHHHHHHHHHHHHHHHhhcCChHhhHhcCCccchhhccHHHHHHHHHHHHHHHHHHHH
Q 022643          159 YVLGR-----PLE--IFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAV  231 (294)
Q Consensus       159 ~~~g~-----~~~--~~~~~~~~~~~~~~~~~~~~~~i~d~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~l~~~~~~~~~  231 (294)
                       ++.+     ...  ..+...++..+...+++.+.+++||++|+|+|++.||||+|+++|+|+++++...+...+|...+
T Consensus       171 -~~~~~~~~~~~~~~~~~~~~~l~slp~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i  249 (315)
T PLN02922        171 -ALASGAGGSEMAILPLTPTVLSASVLVGLTTTLILFCSHFHQIDGDRAVGKMSPLVRLGTEKGSRVVRWAVLLLYSLLA  249 (315)
T ss_pred             -HhcccccccccccccccHHHHHHHHHHHHHHHHHHHHccCcchhhHHHcCccceeeEEChHHHHHHHHHHHHHHHHHHH
Confidence             2221     000  12344455666677888889999999999999999999999999999999999998888888766


Q ss_pred             HHHhhcchh
Q 022643          232 VVGASSPFL  240 (294)
Q Consensus       232 ~~~~~~~~~  240 (294)
                      ........+
T Consensus       250 ~~v~~~~~p  258 (315)
T PLN02922        250 ALGLLKALP  258 (315)
T ss_pred             HHHHHhhhh
Confidence            554443333

>PRK13592 ubiA prenyltransferase; Provisional

Probab=99.93  E-value=1.8e-24  Score=193.82  Aligned_cols=177  Identities=12%  Similarity=0.133  Sum_probs=122.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcccChhhhhhcCCCCcccccccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 022643           37 GLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFV  116 (294)
Q Consensus        37 ~~l~~ll~~~l~~~a~~~iNd~~D~~~D~~n~p~Rpi~sG~is~~~a~~~~~~~~~~~l~l~~~l~~~~~~~~~~~~~~l  116 (294)
                      +.+++.+..++..+++|++|||+|+|+||+|+|+||+|||++|+++++.++..+.++++.++....     .. +...+.
T Consensus        47 ~~~l~~~~vf~~~~~gniiNDy~D~EIDrIN~P~RPLPsG~VS~~~A~~~si~L~~~~l~L~~l~~-----i~-i~~~~i  120 (299)
T PRK13592         47 QEFVGVFTVFGFWMILRIADDFKDYETDRRLFPHRALPSGRVKKKDLAIALSFIVAVSVLLNVLFM-----NN-VGWFLF  120 (299)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHhhHHHhhhcCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHH-----HH-HHHHHH
Confidence            455566677888999999999999999999999999999999999999999888777776654431     11 123334


Q ss_pred             HHHh-----cCCccccccccCchhhHHHHHHHhhhHh--HHHHHHHH-HHHhhcCCccccchHHHHHHHHHHHHHHHHHH
Q 022643          117 GTAY-----SVQLPLLRWKGNSFLAAFCMVSLNGLLT--QFPVYVHI-QKYVLGRPLEIFTRPLMFATAFISCFCVVIAF  188 (294)
Q Consensus       117 ~~~Y-----s~~~pp~rlKr~~~~~~~~~~~~~g~l~--~lg~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (294)
                      .+.|     +.     ++||.++.||+.++...+...  .+.++... +....|.+  ......+++....++-+.++|+
T Consensus       121 ~~lY~~lm~a~-----~~K~~~l~gNl~Va~ltg~~f~~g~~~~~~~fg~~~~g~~--~~~~~~~~l~l~afl~~l~rEI  193 (299)
T PRK13592        121 LYIYGTLMSFW-----FFKRDKIQNSLPLALVTHNPVMMILNLYTISFVCYKYNLP--LLSLPTVLLAFTMYFPSLIWEV  193 (299)
T ss_pred             HHHHHHHHHHH-----HHcccCCCcchhhhhhccchhhhchhhhhhhhhhhhcccc--hhhHHHHHHHHHHHHHHHHHHH
Confidence            5566     64     589999999998876655333  12222110 01112221  1111112332334445578999


Q ss_pred             HhhcCChHhhHhcCCccchhhccHHHHHHHHHHHHHHHHH
Q 022643          189 IKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYG  228 (294)
Q Consensus       189 i~d~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~l~~~~~~  228 (294)
                      .+|++| |||++ |.+|+|+++|.|++.++...+..+...
T Consensus       194 ~KdieD-~gd~~-~~~Tlpi~~G~kkA~~ia~~l~ii~v~  231 (299)
T PRK13592        194 CRKIRA-PKDET-EYVTYSKLFGYKKATRFIEVVTLLDIL  231 (299)
T ss_pred             HHhhcC-Ccccc-CCeeechhccchhHHHHHHHHHHHHHH
Confidence            999999 88886 499999999999999988776544443

>PRK13105 ubiA prenyltransferase; Reviewed

Probab=99.93  E-value=6.5e-24  Score=191.45  Aligned_cols=178  Identities=22%  Similarity=0.221  Sum_probs=123.4

Q ss_pred             HHHHHHHHH----HHhhcccChhhhhhcCCCCcccccccCHHHHHHHHHHHHHHH-----HHHHHHhhhHHHHHHHHHHH
Q 022643           44 PAVLMHIYV----VAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMS-----LAYAVMIRSPPFIWAVIAWI  114 (294)
Q Consensus        44 ~~~l~~~a~----~~iNd~~D~~~D~~n~p~Rpi~sG~is~~~a~~~~~~~~~~~-----l~l~~~l~~~~~~~~~~~~~  114 (294)
                      .+++++...    |.+|||+|+|.|+.|+|++.. .|.++++|++........++     +.+....++ .......+++
T Consensus        38 ~~l~~~~~~n~am~~~Ndy~D~~~d~dn~r~~g~-~g~i~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~-~~~~l~~~ai  115 (282)
T PRK13105         38 GTVFFLIPYNLAMYGINDVFDYESDLRNPRKGGV-EGAVLDRAMHRTTLWASVVTTVPFLVVLLAVGSW-ASGLVLAVSV  115 (282)
T ss_pred             HHHHHHHHHHHHHHhhhhhhhhhcCCCCcccCCC-CCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHH
Confidence            333444444    455999999999999875443 58899999855443333332     222232243 3333446788


Q ss_pred             HHHHHhcCCccccccccCchhhHHHHHHHhhhHhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHHhhcCC
Q 022643          115 FVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHD  194 (294)
Q Consensus       115 ~l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~D  194 (294)
                      +.++.||  .||.|+|++++.++++..+........     +...+ ++.   .+...++....+.+|+.+++.+||+||
T Consensus       116 ~~~~~YS--~~p~rlk~~gl~d~~t~~~~f~~~~v~-----G~~~~-~~~---~~~~~~l~~~~~~~~~~a~~ii~~irD  184 (282)
T PRK13105        116 FAVVAYS--APGLRFKERPFLDSLTSSTHFVSPALY-----GLVLA-GAP---FTAALWAVLAAFFLWGMASHAFGAVQD  184 (282)
T ss_pred             HHHHHhc--CCCccccccchHHHHHHHHHHHHHHHH-----HHHHh-hcc---ccHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence            8899999  489999999998886544322111222     22223 332   344455566677889999999999999


Q ss_pred             hHhhHhcCCccchhhccHHHHHHHHHHHHHHHHHHHHHHH
Q 022643          195 VDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVG  234 (294)
Q Consensus       195 ~e~D~~~G~~Tlpv~~G~~~a~~~~~~l~~~~~~~~~~~~  234 (294)
                      +|+||+.|+||+|+++|+|+++++...++.+++...+..+
T Consensus       185 ie~Dr~~G~~Tlpv~lG~~~a~~~~~~l~~~a~~~~~~~~  224 (282)
T PRK13105        185 VVADREAGIASIATVLGARRTVRLAVGLYAAAAVLMLALP  224 (282)
T ss_pred             hHhHHHcCCccchHHhcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999998888887666443

>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]

Probab=99.92  E-value=5.1e-23  Score=184.29  Aligned_cols=195  Identities=18%  Similarity=0.193  Sum_probs=142.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccChh--hhhh----cCCCCcccccccCHHHHHHHHHHHHHHHHHHH----HHhhhH
Q 022643           35 FTGLMEALVPAVLMHIYVVAINQLSDVE--VDKV----NKPYLPLASGEISMGTGIAITLASALMSLAYA----VMIRSP  104 (294)
Q Consensus        35 l~~~l~~ll~~~l~~~a~~~iNd~~D~~--~D~~----n~p~Rpi~sG~is~~~a~~~~~~~~~~~l~l~----~~l~~~  104 (294)
                      ++..+++++++++++..+|..|||.|.+  .|.+    .+.++.+.+.+++++..+...+.+...+.+++    ...+++
T Consensus        43 ~~~~ll~Li~~~~iq~~vN~~NdY~D~~KG~D~~g~~~~~~~g~I~~~~~k~~~~l~l~l~~~~g~~llg~~~~~~s~~~  122 (303)
T COG1575          43 LLVALLALIAAILLQILVNLANDYFDYKKGTDTHGPDRLKQSGLIVRQSMKPALILSLALFLLAGLALLGVILAALSDWL  122 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCccccccceeecccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence            6677889999999999999999999976  5643    22355566667777777766655554444443    333443


Q ss_pred             HHHHHHHHHHHHHHHhcCCccccccccCchhhHHHHHHHhhhHhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHHHHH
Q 022643          105 PFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCV  184 (294)
Q Consensus       105 ~~~~~~~~~~~l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  184 (294)
                       ++..+.++.+.++.|+.  +|+++++.|+ |++..+..+|.+...+.+     +++.+   .+++..++..+...+.+.
T Consensus       123 -~l~lG~l~~~~g~~YTg--Gp~PlgY~gL-GEi~~~vffG~l~v~g~~-----yiqt~---~~~~~~ll~slp~gil~~  190 (303)
T COG1575         123 -VLLLGLLCIAAGILYTG--GPFPLGYMGL-GEIFVGVFFGPLIVLGAY-----YIQTG---RLSWAILLPSLPVGILIA  190 (303)
T ss_pred             -HHHHHHHHHHheeeecc--CCcCcccCCH-HHHHHHHHHHHHHHHHHH-----HHhcc---cchHHHHHHHHHHHHHHH
Confidence             45555788889999995  7889999887 777777666755543332     44544   356666666666666677


Q ss_pred             HHHHHhhcCChHhhHhcCCccchhhccHHHHHHHHHHHHHHHHHHHHHHHhhcchhh
Q 022643          185 VIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLA  241 (294)
Q Consensus       185 ~~~~i~d~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~  241 (294)
                      ..+..||+||+|+|+|.||+|+|+++|+|+++++...++..+|+..++........+
T Consensus       191 ~Il~aNNirDie~D~~~gk~TLavrLG~~~~~~l~~~l~~~a~l~~~~~~i~~~~~~  247 (303)
T COG1575         191 NILLANNLRDIEEDIRNGKYTLAVRLGRKNARKLYAALLVVAYLAIVIFVILGLFPV  247 (303)
T ss_pred             HHHHhcccccchhHHhcCCcceeeeeccHhHHHHHHHHHHHHHHHHHHHHHHHhchH
Confidence            789999999999999999999999999999999999998888886555434434333

>PRK12875 ubiA prenyltransferase; Reviewed

Probab=99.92  E-value=2.7e-22  Score=181.32  Aligned_cols=169  Identities=19%  Similarity=0.300  Sum_probs=107.1

Q ss_pred             HHHHHHHhhcccChhhhhhcCCCCcccccccCHHHHHH---H-HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcCC
Q 022643           48 MHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIA---I-TLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQ  123 (294)
Q Consensus        48 ~~~a~~~iNd~~D~~~D~~n~p~Rpi~sG~is~~~a~~---~-~~~~~~~~l~l~~~l~~~~~~~~~~~~~~l~~~Ys~~  123 (294)
                      .+.+.|.+||++|+|+||.|+|+|.   |+...++...   . ......+++.+....++.... ..+...++++.||  
T Consensus        57 ~Nl~~y~iND~~D~D~Dr~~prk~~---~r~~~~s~~~~~~~~~~l~~~l~l~l~~~~~~~~~~-~ll~~i~~~~~YS--  130 (282)
T PRK12875         57 ANVFLYGVNDVFDADTDELNPKKDR---EREVRYRGDRRVLVAVALSGALALAFLLVLPPAAWP-ALLAFLVLSVEYS--  130 (282)
T ss_pred             HHHHHhcchhhhhhhccccCCCccC---CCCccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHHc--
Confidence            4455577999999999999987654   2222222221   1 122233334343343432222 2345678899999  


Q ss_pred             ccccccccCchhhHHHHHHHhhhHhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHHhhcCChHhhHhcCC
Q 022643          124 LPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGI  203 (294)
Q Consensus       124 ~pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~D~e~D~~~G~  203 (294)
                      .||+|+|++|+.+..+.+..  .   ++..  +....+.+.   .+...  +.....+|+.+.+++||+||+|+|++.|+
T Consensus       131 ~pP~rlk~~p~~~~~~~g~~--~---~~~~--~~y~~~tg~---~~~~~--l~~a~~l~~~~~~~in~i~Die~D~~aGi  198 (282)
T PRK12875        131 APPLRFKTTPVLDSLSNGLY--I---LPGV--AAYALVSGS---LPPLL--AVAGGWLWAMGMHTFSAIPDIEPDRAAGI  198 (282)
T ss_pred             CCCccchhccHHHHHHHHHH--H---HHHH--HHHHHHcCC---CcHHH--HHHHHHHHHHHHHHHHhccCHHHHHHcCC
Confidence            58999999998665432211  1   2211  111223332   33333  22334688999999999999999999999


Q ss_pred             ccchhhccHHHHHHHHHHHHHHHHHHHHHHH
Q 022643          204 KTLSVMLGKERVFRLSVSMLSIAYGAAVVVG  234 (294)
Q Consensus       204 ~Tlpv~~G~~~a~~~~~~l~~~~~~~~~~~~  234 (294)
                      ||+|+++|+|++++++..+..++.......+
T Consensus       199 ~Tlav~lG~~~a~~~~~~~~~~a~~~~~~~~  229 (282)
T PRK12875        199 RTTATVLGERRTYAYCAACWLLAAAAFAAVD  229 (282)
T ss_pred             ccchhhccHhhHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999888887766666555544

>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=7.4e-23  Score=182.82  Aligned_cols=233  Identities=15%  Similarity=0.077  Sum_probs=160.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccChhhhhhcCC--CCcccccccCHHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHH
Q 022643           35 FTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKP--YLPLASGEISMGTGIAITLASALMSLAYA-VMIRSPPFIWAVI  111 (294)
Q Consensus        35 l~~~l~~ll~~~l~~~a~~~iNd~~D~~~D~~n~p--~Rpi~sG~is~~~a~~~~~~~~~~~l~l~-~~l~~~~~~~~~~  111 (294)
                      ...++.++++..+..+++|++|+++|+|+|++++|  +||+++|+++|+|++.++.++.++|+.+. +..|+..-.+...
T Consensus        51 ~~l~~~~~~g~~L~a~~a~a~N~~~DrDID~~M~RT~~RP~~~G~i~p~~al~fgl~L~~~g~~~l~~~vn~laa~l~~~  130 (304)
T COG0109          51 PLLLLLTLLGGALGAGGAGAFNMYIDRDIDALMERTRKRPLVTGLISPREALAFGLVLGVAGFSLLWFLVNLLAAVLGLF  130 (304)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhccCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556678899999999999999999999999887  99999999999999999999999998887 5677666555555


Q ss_pred             HHHHHHHHhcCCccccccccCchhhHHHHHHHhhhHhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHHhh
Q 022643          112 AWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKD  191 (294)
Q Consensus       112 ~~~~l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~d  191 (294)
                      ..++..++||..     +||++....+.++..+...+.+|     +.++.|.    .+...+++...+++|+...--.-+
T Consensus       131 gi~~Yv~vYT~~-----lKR~T~~NiviGg~aGa~PpliG-----waAvtg~----~~~~a~~Lf~IiF~WtPpHfwALA  196 (304)
T COG0109         131 GIFFYVVVYTLW-----LKRRTPQNIVIGGFAGAMPPLIG-----WAAVTGS----ISLGAILLFAIIFLWTPPHFWALA  196 (304)
T ss_pred             HHHHHhhhhhhh-----ccCCcccceeeeeccccccccce-----eeeeeCC----CCchHHHHHHHHHHhccHHHHHHH
Confidence            667778999973     79998754433333333333333     3345564    355555565667788865544556


Q ss_pred             cCChHhhHhcCCccchhhccHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHhhc-CC-CCh
Q 022643          192 LHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAV-DL-SDN  269 (294)
Q Consensus       192 ~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-d~-~~~  269 (294)
                      ++-.||.+++|+..+|++-|++.+++.......+.....+........++   .|.+...+....++++..+. .. +.+
T Consensus       197 l~~~~DY~~AgiPMlPvv~G~~~t~~~I~~y~~~l~~~sl~~~~~g~~g~---~Y~v~a~~l~~~~l~~a~~~~~~~~~~  273 (304)
T COG0109         197 LKYKDDYKAAGIPMLPVVKGERRTKRQILLYTLALAPVSLLLALLGYVGY---LYLVVATLLGAWFLALAWKLYRKDDRK  273 (304)
T ss_pred             HHHHHHHHHcCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHhccchh---HHHHHHHHHHHHHHHHHHHHHhCccHH
Confidence            67778889999999999999999998876654443333232222111222   44444455555555555443 22 335


Q ss_pred             HHHHHHHHHHHHHHH
Q 022643          270 ASILSFYMFIWKLYY  284 (294)
Q Consensus       270 ~~~~~f~~~~~~l~~  284 (294)
                      ++.+-|..++-++..
T Consensus       274 ~A~klF~~S~~yL~~  288 (304)
T COG0109         274 WARKLFKYSIIYLAL  288 (304)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            567777777666654

>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional

Probab=99.76  E-value=1.8e-16  Score=144.01  Aligned_cols=104  Identities=26%  Similarity=0.400  Sum_probs=85.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccChhhhhhc--CCCCcccccccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 022643           35 FTGLMEALVPAVLMHIYVVAINQLSDVEVDKVN--KPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIA  112 (294)
Q Consensus        35 l~~~l~~ll~~~l~~~a~~~iNd~~D~~~D~~n--~p~Rpi~sG~is~~~a~~~~~~~~~~~l~l~~~l~~~~~~~~~~~  112 (294)
                      +...+.++++..++++++|++||+.|+|+||+|  ||+||+++|++|+++++.++.++..+++.+++.+|+..... ...
T Consensus        45 ~~~~llafl~~~l~~sa~y~iND~~D~e~Dr~~prk~~RPlasG~is~~~A~~~~~~l~~~~l~la~~l~~~~~~~-~~~  123 (295)
T PRK12324         45 LLKVLLAFVLFCLASSAVYLVNDIRDVEADRLHPTKRNRPIASGVVSVSLAYILAVVLLVASLALAYLLSPKLALV-LLV  123 (295)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHhhccCCCCCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence            334555666777889999999999999999997  67999999999999999999999999999888888755543 356


Q ss_pred             HHHHHHHhcCCccccccccCchhhHHHHHHHh
Q 022643          113 WIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLN  144 (294)
Q Consensus       113 ~~~l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~  144 (294)
                      .+++.+.||.     ++||++..++++++...
T Consensus       124 ~~~~~~~Ys~-----~lK~~~~~d~l~va~~~  150 (295)
T PRK12324        124 YLVLNLAYSF-----KLKHQPVLDVFCIASGF  150 (295)
T ss_pred             HHHHHHHhhH-----HhcCCchhhHHHHHHHH
Confidence            6777899995     58999998888776543

>PRK08238 hypothetical protein; Validated

Probab=99.71  E-value=7.8e-16  Score=148.75  Aligned_cols=151  Identities=21%  Similarity=0.304  Sum_probs=111.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccChhhhhhc--CCCCcccccccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 022643           35 FTGLMEALVPAVLMHIYVVAINQLSDVEVDKVN--KPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIA  112 (294)
Q Consensus        35 l~~~l~~ll~~~l~~~a~~~iNd~~D~~~D~~n--~p~Rpi~sG~is~~~a~~~~~~~~~~~l~l~~~l~~~~~~~~~~~  112 (294)
                      +...+.++++..++++++|++||+.|+|+||+|  ||+||++||++|+++|+.++.++.++|+.+++.+|+... ...+.
T Consensus       225 ~~~~~~~f~~~~l~~sa~~~~ND~~D~e~Dr~~~rk~~RPlasG~is~~~A~~~~~~l~~~~~~l~~~l~~~~~-~~~~~  303 (479)
T PRK08238        225 LLAALLAFLAFSLCASAVYILNDLLDLEADRAHPRKRRRPFASGALPIPFGLAAAPLLLLAGLALALALGPAFL-LVLLA  303 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHH
Confidence            445666777888999999999999999999998  579999999999999999999999999999988887433 34456


Q ss_pred             HHHHHHHhcCCccccccccCchhhHHHHHHHhhhHhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHHhhc
Q 022643          113 WIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDL  192 (294)
Q Consensus       113 ~~~l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~  192 (294)
                      .+++..+||.     ++||++++++++.++..+    ++... ++. ..+.     +.+.+++.+ ..+........|..
T Consensus       304 ~~~~~~~Ys~-----~lKr~~~~~~~~la~~~~----lr~~~-G~~-a~~~-----~~s~wll~~-~~~~~l~la~~KR~  366 (479)
T PRK08238        304 YLALTLAYSL-----RLKRKVLVDVLTLAALYT----LRIIA-GAA-AIGV-----ALSFWLLAF-SMFFFLSLALVKRY  366 (479)
T ss_pred             HHHHHHHhhH-----HhcCCccccchHHHHHHH----HHHHH-HHH-Hhcc-----CHHHHHHHH-HHHHHHHHHHHHhH
Confidence            7777889995     589999999888765433    22221 222 2221     233333322 22223345678999


Q ss_pred             CChHhhHhcCC
Q 022643          193 HDVDGDKKFGI  203 (294)
Q Consensus       193 ~D~e~D~~~G~  203 (294)
                      .|.+++++.|.
T Consensus       367 ~El~~~~~~~~  377 (479)
T PRK08238        367 TELRRALQRGK  377 (479)
T ss_pred             HHHHHHHhcCC
Confidence            99998888885

>KOG1380 consensus Heme A farnesyltransferase [Coenzyme transport and metabolism]

Probab=99.25  E-value=1.3e-11  Score=110.45  Aligned_cols=224  Identities=16%  Similarity=0.138  Sum_probs=131.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccChhhhhhcCC--CCcccccccCHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHH
Q 022643           35 FTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKP--YLPLASGEISMGTGIAITLASALMSLAYAVM-IRSPPFIWAVI  111 (294)
Q Consensus        35 l~~~l~~ll~~~l~~~a~~~iNd~~D~~~D~~n~p--~Rpi~sG~is~~~a~~~~~~~~~~~l~l~~~-l~~~~~~~~~~  111 (294)
                      +..++...+|..+..++.|.+||+++.+.|++++|  .||+++|++||.+|..++.+....|.-+.+. .|+....+...
T Consensus       126 ~~~l~~~tvGT~L~S~sANaiNQ~~E~~~DsqM~RT~~Rplv~g~isp~hA~~fAt~~g~~G~slL~~gvNpl~a~Lga~  205 (409)
T KOG1380|consen  126 FPTLLYTTVGTGLCSASANAINQIFEPPFDSQMKRTQNRPLVRGRISPLHAVTFATLTGTAGVSLLAFGVNPLAAALGAG  205 (409)
T ss_pred             cchhHHHhhhhHHHHhhhHhhhhhccCCchhhhHhhcccccccCccChHHHHHHHHHhccccceeeeecccHHHHHHhhc
Confidence            44555677899999999999999999999999887  9999999999999999988888777766544 66544333322


Q ss_pred             HHHHHHHHhcCCccccccccCchhhHHHHHHHhhhHhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHHHHHH--HHHH
Q 022643          112 AWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVV--IAFI  189 (294)
Q Consensus       112 ~~~~l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~i  189 (294)
                      -.++...+|+      ++||......-.++. .|.+.++    +++.+..|.    .+...+++......|.+-  ....
T Consensus       206 Ni~LY~~vYT------PlKrihiinTWvGav-VGAIPPL----MGwAAasg~----l~~ga~iLa~~LyaWQfPHFnaLS  270 (409)
T KOG1380|consen  206 NIFLYAGVYT------PLKRIHIINTWVGAV-VGAIPPL----MGWAAASGL----LDPGAMILAGILYAWQFPHFNALS  270 (409)
T ss_pred             chheeecccc------chhhhhhhhhHHHHH-hccCCcc----chhhhhccC----CCccHHHHHHHHHHhcccchhhhh
Confidence            3345567787      378865422222222 2333332    233333443    234455555566778753  2334


Q ss_pred             hhcCChHhhHhcCCccchhhc---cHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHhhc--
Q 022643          190 KDLHDVDGDKKFGIKTLSVML---GKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAV--  264 (294)
Q Consensus       190 ~d~~D~e~D~~~G~~Tlpv~~---G~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--  264 (294)
                      .+++  +|..+.|.|.+++.=   -++.+.+....++.+.|.. -.+++.   .|   +|.+-...+-..+.+...+.  
T Consensus       271 ~~lR--~DYs~~GY~Mma~~np~l~rr~alr~s~a~~~L~~~~-~~~~lT---~~---wf~i~s~~~na~l~~~afkFY~  341 (409)
T KOG1380|consen  271 WNLR--NDYSKAGYRMMAVTNPGLCRRVALRYSLAFLPLSYAA-PSTDLT---TW---WFAIESLPLNAYLAYLAFKFYR  341 (409)
T ss_pred             hhhc--hhhhhccEEEEEeeccchhhHHHHHHHHHHhhhhccc-cccCcc---cc---eeeeccccHhHHHHHHHHHHhh
Confidence            4443  467899999998863   3444455554443333221 111111   12   22222222223333333332  


Q ss_pred             CCCChHHHHHHHHHHHHH
Q 022643          265 DLSDNASILSFYMFIWKL  282 (294)
Q Consensus       265 d~~~~~~~~~f~~~~~~l  282 (294)
                      |.+..++.+-||.+++-|
T Consensus       342 ~~d~~~aRklF~aSLlhL  359 (409)
T KOG1380|consen  342 DRDYHNARKLFFASLLHL  359 (409)
T ss_pred             ccchhhHHHHHHHHHHHH
Confidence            445566788888875543

>KOG4581 consensus Predicted membrane protein [Function unknown]

Probab=98.93  E-value=7e-10  Score=95.20  Aligned_cols=189  Identities=12%  Similarity=0.093  Sum_probs=119.1

Q ss_pred             HHHHHHHHHHHHHHhhcccCh--hhhhhcCCCCcccccccCHHHHHHHHHHHHHHHHHHH---HHhhhHH---HHHHHHH
Q 022643           41 ALVPAVLMHIYVVAINQLSDV--EVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYA---VMIRSPP---FIWAVIA  112 (294)
Q Consensus        41 ~ll~~~l~~~a~~~iNd~~D~--~~D~~n~p~Rpi~sG~is~~~a~~~~~~~~~~~l~l~---~~l~~~~---~~~~~~~  112 (294)
                      +..+.+-.+.++|.+|.|+|.  .+|++...+|.++...+++.+...++..+...+....   ..+++..   +.+..+.
T Consensus       104 ~a~avlavh~agnlvntyfdf~kgid~kkaddrtlvd~il~~~dvv~~g~~ly~~gc~~~~~l~~lsp~klehlaliyfg  183 (359)
T KOG4581|consen  104 CAFAVLAVHCAGNLVNTYFDFIKGIDHKKADDRTLVDHILEKDDVVRFGAFLYMAGCGCAACLAVLSPAKLEHLALIYFG  183 (359)
T ss_pred             HHhhheeeecccchhhhhhhhhhccccccccchhHHHHhcChhheehhhHHHHHhcchHHHHHHhCCHhhhhhhhhhhcc
Confidence            444556789999999999995  4788777799999988999888888877776554332   3344321   1112234


Q ss_pred             HHHHHHHhcCCccccccccCchhhHHHHHHHhhhHhHHHHHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHHhhc
Q 022643          113 WIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDL  192 (294)
Q Consensus       113 ~~~l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~l~~lg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~  192 (294)
                      ++--.++|+.+   +.+|.... |.+++.+..|.+..+-.|     +.+.+.   ..+..+--.....+-+-++.+.||.
T Consensus       184 gls~sflytgg---igfkyial-gdliili~fgpiavlfaf-----~~q~g~---l~~~~l~yaiplalnteailhsnnt  251 (359)
T KOG4581|consen  184 GLSGSFLYTGG---IGFKYIAL-GDLIILILFGPIAVLFAF-----AIQTGH---LAIFPLGYAIPLALNTEAILHSNNT  251 (359)
T ss_pred             CcccceeEecc---cceEEEec-cCEEEEEeechHHHHHHH-----HHhcCc---eeEEeehheeeeccchHHHhccCCC
Confidence            44456788864   24565443 443333333322221111     122221   1111111112223334456789999


Q ss_pred             CChHhhHhcCCccchhhccHHHHHHHHHHHHHHHHHHHHHHHhhcchhh
Q 022643          193 HDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLA  241 (294)
Q Consensus       193 ~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~  241 (294)
                      +|.|.||++|+-|+++.+|+..+-.++..++.+.|....+.+..+...+
T Consensus       252 rd~dndr~agivtlailig~t~s~ily~~llf~py~lf~i~~~~~si~~  300 (359)
T KOG4581|consen  252 RDADNDREAGIVTLAILIGPTASHILYAMLLFAPYLLFFIFALHCSISF  300 (359)
T ss_pred             cccccccccCeEEEEEeecccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999998888888888788887777776665543

>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]

Probab=94.41  E-value=0.23  Score=45.43  Aligned_cols=44  Identities=18%  Similarity=0.258  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHHHHhhcccChhhhhhcCCCCcccccccCHHHHHHH
Q 022643           41 ALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAI   86 (294)
Q Consensus        41 ~ll~~~l~~~a~~~iNd~~D~~~D~~n~p~Rpi~sG~is~~~a~~~   86 (294)
                      .-+.+....+..+..|+..|.|+|+.|+|+.+..  |+..+.++.+
T Consensus       181 ~slp~gil~~~Il~aNNirDie~D~~~gk~TLav--rLG~~~~~~l  224 (303)
T COG1575         181 PSLPVGILIANILLANNLRDIEEDIRNGKYTLAV--RLGRKNARKL  224 (303)
T ss_pred             HHHHHHHHHHHHHHhcccccchhHHhcCCcceee--eeccHhHHHH
Confidence            3445566777888899999999999998754433  4444555444

>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=93.57  E-value=1.3  Score=41.06  Aligned_cols=48  Identities=19%  Similarity=0.225  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHHHHHhhcccChhhhhhcCC-CCcccccccCHHHHHHHHHHHH
Q 022643           41 ALVPAVLMHIYVVAINQLSDVEVDKVNKP-YLPLASGEISMGTGIAITLASA   91 (294)
Q Consensus        41 ~ll~~~l~~~a~~~iNd~~D~~~D~~n~p-~Rpi~sG~is~~~a~~~~~~~~   91 (294)
                      ..+...+........||+.|+|+||.+.+ +-|.   ++.++.+......+.
T Consensus       194 ~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v---~lG~~~a~~l~~~l~  242 (317)
T PRK13387        194 ISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVY---YIGREKGVVLFAILF  242 (317)
T ss_pred             HHHHHHHHHHHHHHhcCCccchhHHHcCCeeeee---eEcHHhHHHHHHHHH
Confidence            34445566667788999999999999865 3333   455566655443333

>PRK13591 ubiA prenyltransferase; Provisional

Probab=93.13  E-value=0.65  Score=42.71  Aligned_cols=66  Identities=17%  Similarity=0.261  Sum_probs=36.7

Q ss_pred             HhhcccChhhhhhcCC-CCcccccccCHHHHHHHHHHHH---HHHHHHHHHhh-----hHHHHHHHHHHHHHHHHhcC
Q 022643           54 AINQLSDVEVDKVNKP-YLPLASGEISMGTGIAITLASA---LMSLAYAVMIR-----SPPFIWAVIAWIFVGTAYSV  122 (294)
Q Consensus        54 ~iNd~~D~~~D~~n~p-~Rpi~sG~is~~~a~~~~~~~~---~~~l~l~~~l~-----~~~~~~~~~~~~~l~~~Ys~  122 (294)
                      .+||+.|.|.|+.+.+ .-|+.=|   ++.+..+.....   .+..+.+..++     +...+.+.+.+++..+.|+.
T Consensus       197 iindirDiEGDr~~G~kTLPV~lG---~~~A~~l~~~l~~~~~l~li~~~~~g~l~~~~~~~~~s~~~~l~~~~~~~~  271 (307)
T PRK13591        197 CVYDFKDVKGDTLAGIKTLPVSLG---EQKTRNLLLGIHLFSHLVLGIALIFGVIAFEPIILLYSFVCGLICIQVYSS  271 (307)
T ss_pred             HHHHhhhhHhHHHcCCeeEEEEEC---HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHcC
Confidence            5899999999998764 5565444   333433322222   11122222222     22233345677778889996

>PRK12872 ubiA prenyltransferase; Reviewed

Probab=91.45  E-value=1.7  Score=39.35  Aligned_cols=34  Identities=21%  Similarity=0.282  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHHhhcccChhhhhhcC-CCCcccccc
Q 022643           44 PAVLMHIYVVAINQLSDVEVDKVNK-PYLPLASGE   77 (294)
Q Consensus        44 ~~~l~~~a~~~iNd~~D~~~D~~n~-p~Rpi~sG~   77 (294)
                      ..++....-..+||..|+|.||+++ +.-|..-|+
T Consensus       169 ~~fl~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~  203 (285)
T PRK12872        169 FIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGK  203 (285)
T ss_pred             HHHHHHHHHHHHHhcccchhHHHcCCcccchhcch
Confidence            3344455666789999999999865 455655554

>PLN02922 prenyltransferase

Probab=91.16  E-value=1.6  Score=40.46  Aligned_cols=42  Identities=10%  Similarity=0.142  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHHhhcccChhhhhhcCC-CCcccccccCHHHHHHHH
Q 022643           43 VPAVLMHIYVVAINQLSDVEVDKVNKP-YLPLASGEISMGTGIAIT   87 (294)
Q Consensus        43 l~~~l~~~a~~~iNd~~D~~~D~~n~p-~Rpi~sG~is~~~a~~~~   87 (294)
                      +...+........||+.|+|+||++++ +-|.   ++.++.+..+.
T Consensus       195 lp~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v---~lG~~~a~~l~  237 (315)
T PLN02922        195 VLVGLTTTLILFCSHFHQIDGDRAVGKMSPLV---RLGTEKGSRVV  237 (315)
T ss_pred             HHHHHHHHHHHHHccCcchhhHHHcCccceee---EEChHHHHHHH
Confidence            344466677888999999999999876 3333   44555555543

>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=90.91  E-value=1.7  Score=40.02  Aligned_cols=38  Identities=13%  Similarity=0.143  Sum_probs=26.0

Q ss_pred             HHHHHHHHhhcccChhhhhhcCC-CCcccccccCHHHHHHHH
Q 022643           47 LMHIYVVAINQLSDVEVDKVNKP-YLPLASGEISMGTGIAIT   87 (294)
Q Consensus        47 l~~~a~~~iNd~~D~~~D~~n~p-~Rpi~sG~is~~~a~~~~   87 (294)
                      +........||+-|+|+||.+.+ +-|.   ++.++.+....
T Consensus       185 ll~~~IL~~Nn~rD~e~D~~~Gk~TL~v---~lG~~~a~~ly  223 (304)
T PRK07419        185 LATSLILFCSHFHQVEDDLAAGKRSPIV---RLGTKRGAQLL  223 (304)
T ss_pred             HHHHHHHHHcCCcchhhHHHcCCcceee---eechHhHHHHH
Confidence            45567777999999999999865 3333   44455555543

>PRK13105 ubiA prenyltransferase; Reviewed

Probab=90.79  E-value=2.3  Score=38.73  Aligned_cols=57  Identities=11%  Similarity=0.113  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHhhcccChhhhhhcCCCCcccccccCHHHHHHHHHHHHHHHHHHHHHhh
Q 022643           44 PAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIR  102 (294)
Q Consensus        44 ~~~l~~~a~~~iNd~~D~~~D~~n~p~Rpi~sG~is~~~a~~~~~~~~~~~l~l~~~l~  102 (294)
                      +..+...+...+||+.|.|.||++.. |.+|. ++.+|.+..+...+.+++.++....+
T Consensus       168 ~~~~~~~a~~ii~~irDie~Dr~~G~-~Tlpv-~lG~~~a~~~~~~l~~~a~~~~~~~~  224 (282)
T PRK13105        168 AFFLWGMASHAFGAVQDVVADREAGI-ASIAT-VLGARRTVRLAVGLYAAAAVLMLALP  224 (282)
T ss_pred             HHHHHHHHHHHHHhCcchHhHHHcCC-ccchH-HhcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445677778999999999998653 22332 56677777776666666554444333

>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

Probab=90.43  E-value=4.2  Score=36.96  Aligned_cols=33  Identities=21%  Similarity=0.052  Sum_probs=23.5

Q ss_pred             HHHHHHHHHhhcCChHhhHhcCC-ccchhhccHH
Q 022643          181 CFCVVIAFIKDLHDVDGDKKFGI-KTLSVMLGKE  213 (294)
Q Consensus       181 ~~~~~~~~i~d~~D~e~D~~~G~-~Tlpv~~G~~  213 (294)
                      +...+...+||+.|+|-|++.-+ |.=|.-=|+-
T Consensus        58 ~~~~ag~~iND~~D~eiD~~n~rt~~RPl~sG~v   91 (289)
T COG0382          58 LARSAGYVINDLADREIDRINPRTKNRPLPSGRV   91 (289)
T ss_pred             HHHHHhHHHHHHhhhhccCCCCCccCCCCCCCCC
Confidence            33445678999999999998877 4455555543

>PRK12884 ubiA prenyltransferase; Reviewed

Probab=89.36  E-value=2.6  Score=38.00  Aligned_cols=31  Identities=13%  Similarity=0.065  Sum_probs=24.3

Q ss_pred             HHHHHHHHHhhcCChHhhHhcCCccchhhccH
Q 022643          181 CFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGK  212 (294)
Q Consensus       181 ~~~~~~~~i~d~~D~e~D~~~G~~Tlpv~~G~  212 (294)
                      +...+-..+||+.|.|.|++. ++.=|..-|+
T Consensus        48 l~~~a~~~~Nd~~D~~~D~~~-r~~Rpl~~G~   78 (279)
T PRK12884         48 FASGSANALNDYFDYEVDRIN-RPDRPIPSGR   78 (279)
T ss_pred             HHHHHHHHHHhhhhHhhhhcc-CCCCCCCCCC
Confidence            334456789999999999988 6777777774

>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase

Probab=88.67  E-value=3.3  Score=37.74  Aligned_cols=42  Identities=12%  Similarity=0.058  Sum_probs=28.3

Q ss_pred             HHHHHHHHhhcccChhhhhhcCC-CCcccccccCHHHHHHHHHHHH
Q 022643           47 LMHIYVVAINQLSDVEVDKVNKP-YLPLASGEISMGTGIAITLASA   91 (294)
Q Consensus        47 l~~~a~~~iNd~~D~~~D~~n~p-~Rpi~sG~is~~~a~~~~~~~~   91 (294)
                      +...+....||.-|+|+|+.+.+ +-|.   ++.++.+......+.
T Consensus       172 l~~~~iL~~Nn~rD~e~D~~~Gk~TL~v---~lG~~~a~~l~~~l~  214 (285)
T TIGR02235       172 LATTLILFCSHFHQVEDDLAHGKRSPVV---RLGTKLAAKIVPWVI  214 (285)
T ss_pred             HHHHHHHHhcCCccchhHHHcCCcceeh---eecHHhHHHHHHHHH
Confidence            56667778999999999999865 3333   455666655443333

This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.

>PRK12875 ubiA prenyltransferase; Reviewed

Probab=88.41  E-value=12  Score=34.04  Aligned_cols=51  Identities=16%  Similarity=0.099  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHHhhcccChhhhhhcC-CCCcccccccCHHHHHHHHHHHHHHHHHH
Q 022643           44 PAVLMHIYVVAINQLSDVEVDKVNK-PYLPLASGEISMGTGIAITLASALMSLAY   97 (294)
Q Consensus        44 ~~~l~~~a~~~iNd~~D~~~D~~n~-p~Rpi~sG~is~~~a~~~~~~~~~~~l~l   97 (294)
                      +..+...+...+||+.|+|.|++.+ +.-|.   ++.++.+..+...+..++..+
T Consensus       173 a~~l~~~~~~~in~i~Die~D~~aGi~Tlav---~lG~~~a~~~~~~~~~~a~~~  224 (282)
T PRK12875        173 GGWLWAMGMHTFSAIPDIEPDRAAGIRTTAT---VLGERRTYAYCAACWLLAAAA  224 (282)
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHcCCccchh---hccHhhHHHHHHHHHHHHHHH
Confidence            3456666778899999999999754 34443   445566665555554444433

>PLN00012 chlorophyll synthetase; Provisional

Probab=88.08  E-value=4.7  Score=38.27  Aligned_cols=32  Identities=22%  Similarity=0.342  Sum_probs=23.8

Q ss_pred             HHHHHHHHHhhcccChhhhhhc-CCCCcccccc
Q 022643           46 VLMHIYVVAINQLSDVEVDKVN-KPYLPLASGE   77 (294)
Q Consensus        46 ~l~~~a~~~iNd~~D~~~D~~n-~p~Rpi~sG~   77 (294)
                      ++...+....||+.|+|.|++. +|.-|+.-|+
T Consensus       262 ~l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~  294 (375)
T PLN00012        262 SIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGV  294 (375)
T ss_pred             HHHHHHHHHHhhhcchhhHHHcCCcccceeech
Confidence            3456667779999999999975 4566765554

>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]

Probab=87.87  E-value=9.5  Score=33.33  Aligned_cols=34  Identities=12%  Similarity=0.216  Sum_probs=23.0

Q ss_pred             HHHHHHHHHhhcCChHhhHhc-CCccchhhccHHH
Q 022643          181 CFCVVIAFIKDLHDVDGDKKF-GIKTLSVMLGKER  214 (294)
Q Consensus       181 ~~~~~~~~i~d~~D~e~D~~~-G~~Tlpv~~G~~~  214 (294)
                      +........||+.|.|.|+.. +++.-|..-|+-+
T Consensus        34 ~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~   68 (257)
T PF01040_consen   34 LLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRIS   68 (257)
T ss_pred             HHHHHHHHhhChhhhhcCcccccccCcchhHHHHh
Confidence            334456788999999999995 3445555555443

These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane

>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated

Probab=87.71  E-value=4.8  Score=36.56  Aligned_cols=44  Identities=20%  Similarity=0.203  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHhhcccChhhhhhcCC-CCcccccccCHHHHHHHHHHHH
Q 022643           45 AVLMHIYVVAINQLSDVEVDKVNKP-YLPLASGEISMGTGIAITLASA   91 (294)
Q Consensus        45 ~~l~~~a~~~iNd~~D~~~D~~n~p-~Rpi~sG~is~~~a~~~~~~~~   91 (294)
                      ..+........||+.|+|.||.+.+ .-|.   ++.++.+......+.
T Consensus       177 ~~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v---~lG~~~a~~~~~~l~  221 (293)
T PRK06080        177 CGLLIGAVLLANNIRDIETDRENGKNTLAV---RLGDKNARRLHAALL  221 (293)
T ss_pred             HHHHHHHHHHhcCCCcchhHHHcCCeeEEe---eECcHhHHHHHHHHH
Confidence            3345566678999999999998754 3333   344555544443333

>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial

Probab=87.01  E-value=5  Score=36.38  Aligned_cols=36  Identities=19%  Similarity=0.140  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHHHhhcccChhhhhhc-CCCCcccccc
Q 022643           42 LVPAVLMHIYVVAINQLSDVEVDKVN-KPYLPLASGE   77 (294)
Q Consensus        42 ll~~~l~~~a~~~iNd~~D~~~D~~n-~p~Rpi~sG~   77 (294)
                      .++.++.+..-..+|++.|+|.|++. .|.-|..-|+
T Consensus       166 ~~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~  202 (281)
T TIGR01474       166 YLANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGD  202 (281)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhh
Confidence            34556667777789999999999975 4577776664

A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.

>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase

Probab=86.92  E-value=5.2  Score=36.16  Aligned_cols=37  Identities=22%  Similarity=0.284  Sum_probs=24.4

Q ss_pred             HHHHHHHHhhcccChhhhhhcC-CCCcccccccCHHHHHHH
Q 022643           47 LMHIYVVAINQLSDVEVDKVNK-PYLPLASGEISMGTGIAI   86 (294)
Q Consensus        47 l~~~a~~~iNd~~D~~~D~~n~-p~Rpi~sG~is~~~a~~~   86 (294)
                      +...+....||+.|+|.||+++ +.-|..-|   +|.+..+
T Consensus       172 l~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG---~~~a~~l  209 (283)
T TIGR01476       172 LGAHGIMTLNDFKSVEGDRQLGLRSLPVMIG---VKRAAIV  209 (283)
T ss_pred             HHHHHHHHHHhccchhhHHHcCCcCcceEEc---HHHHHHH
Confidence            3445557899999999999864 35555444   4444444

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.

>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed

Probab=86.90  E-value=4.8  Score=37.17  Aligned_cols=31  Identities=29%  Similarity=0.340  Sum_probs=22.5

Q ss_pred             HHHHHHHHhhcccChhhhhhc-CCCCcccccc
Q 022643           47 LMHIYVVAINQLSDVEVDKVN-KPYLPLASGE   77 (294)
Q Consensus        47 l~~~a~~~iNd~~D~~~D~~n-~p~Rpi~sG~   77 (294)
                      +...+....||+.|+|.||.+ +|.-|+.-|+
T Consensus       200 l~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~  231 (314)
T PRK07566        200 LGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGE  231 (314)
T ss_pred             HHHHHHHHHHHHHHhHhHHHcCCcccceeEcH
Confidence            345556789999999999986 4566665554

>PRK12392 bacteriochlorophyll c synthase; Provisional

Probab=86.66  E-value=4.1  Score=37.96  Aligned_cols=33  Identities=27%  Similarity=0.357  Sum_probs=23.2

Q ss_pred             HHHHHHHHHHHhhcccChhhhhhcC-CCCccccc
Q 022643           44 PAVLMHIYVVAINQLSDVEVDKVNK-PYLPLASG   76 (294)
Q Consensus        44 ~~~l~~~a~~~iNd~~D~~~D~~n~-p~Rpi~sG   76 (294)
                      ..++...+-..+||..|+|.|+... +.-|+.=|
T Consensus       188 ~~~l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G  221 (331)
T PRK12392        188 LNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIG  221 (331)
T ss_pred             HHHHHHHHHHHHHcccchhhHHHcCCeeeEeEEc
Confidence            3445566667799999999999864 35555444

>TIGR02056 ChlG chlorophyll synthase, ChlG

Probab=86.33  E-value=6.1  Score=36.30  Aligned_cols=38  Identities=26%  Similarity=0.358  Sum_probs=24.9

Q ss_pred             HHHHHHHHhhcccChhhhhhcC-CCCcccccccCHHHHHHHH
Q 022643           47 LMHIYVVAINQLSDVEVDKVNK-PYLPLASGEISMGTGIAIT   87 (294)
Q Consensus        47 l~~~a~~~iNd~~D~~~D~~n~-p~Rpi~sG~is~~~a~~~~   87 (294)
                      +...+....||+.|+|.|+++. |.-|..-|   ++.+....
T Consensus       194 l~~~~i~~~n~~~D~e~D~~~G~~Tlpv~lG---~~~a~~~~  232 (306)
T TIGR02056       194 IAGLGIAIVNDFKSVEGDRALGLQSLPVAFG---IETAAWIC  232 (306)
T ss_pred             HHHHHHHHHHHccChHHHHHcCCcCcchhcC---hHHHHHHH
Confidence            4555666799999999999865 35554444   44444443

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).

>PLN02809 4-hydroxybenzoate nonaprenyltransferase

Probab=85.91  E-value=11  Score=34.50  Aligned_cols=31  Identities=32%  Similarity=0.160  Sum_probs=23.6

Q ss_pred             HHHHHHHhhcCChHhhHhcCC-ccchhhccHH
Q 022643          183 CVVIAFIKDLHDVDGDKKFGI-KTLSVMLGKE  213 (294)
Q Consensus       183 ~~~~~~i~d~~D~e~D~~~G~-~Tlpv~~G~~  213 (294)
                      ..+-..+||+.|+|-|++..| |.=|..-|+-
T Consensus        58 ~~a~~~~Nd~~Dr~iD~~~~RT~~RPL~sG~i   89 (289)
T PLN02809         58 RGAGCTINDLLDRDIDKKVERTKLRPIASGAL   89 (289)
T ss_pred             HHHHHHHHhhHHhccccCCCCCCCCCCCCCCC
Confidence            345678999999999998766 5677777743

>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=85.61  E-value=6.3  Score=35.71  Aligned_cols=36  Identities=14%  Similarity=0.050  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHHHHhhcccChhhhhhcC-CCCcccccc
Q 022643           42 LVPAVLMHIYVVAINQLSDVEVDKVNK-PYLPLASGE   77 (294)
Q Consensus        42 ll~~~l~~~a~~~iNd~~D~~~D~~n~-p~Rpi~sG~   77 (294)
                      .+..++.+..-...|+..|+|.|+++. |.-|..-|+
T Consensus       171 ~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~  207 (285)
T PRK12847        171 YIGCIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGN  207 (285)
T ss_pred             HHHHHHHHHHHHHHHHhccHhhHHHcCCchhHHHhcc
Confidence            334556666667889999999999865 466665554

>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional

Probab=84.95  E-value=5.1  Score=36.71  Aligned_cols=40  Identities=15%  Similarity=0.354  Sum_probs=23.9

Q ss_pred             HHHHHHHhhcCChHhhHhcC-Cccchhh---ccHHHHHHHHHHH
Q 022643          183 CVVIAFIKDLHDVDGDKKFG-IKTLSVM---LGKERVFRLSVSM  222 (294)
Q Consensus       183 ~~~~~~i~d~~D~e~D~~~G-~~Tlpv~---~G~~~a~~~~~~l  222 (294)
                      ..+...+||+.|.|.|++.- +|.=|..   +..+.+.....++
T Consensus        59 ~sa~y~iND~~D~e~Dr~~prk~~RPlasG~is~~~A~~~~~~l  102 (295)
T PRK12324         59 SSAVYLVNDIRDVEADRLHPTKRNRPIASGVVSVSLAYILAVVL  102 (295)
T ss_pred             HHHHHHHHhHHHHHhhccCCCCCCCCCCCCccCHHHHHHHHHHH
Confidence            34567899999999999852 2222333   3444444444333

>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase

Probab=84.51  E-value=6.8  Score=35.65  Aligned_cols=40  Identities=20%  Similarity=0.221  Sum_probs=26.4

Q ss_pred             HHHHHHHHhhcccChhhhhhcCC-CCcccccccCHHHHHHHHHH
Q 022643           47 LMHIYVVAINQLSDVEVDKVNKP-YLPLASGEISMGTGIAITLA   89 (294)
Q Consensus        47 l~~~a~~~iNd~~D~~~D~~n~p-~Rpi~sG~is~~~a~~~~~~   89 (294)
                      +........||..|+|+|+.+.+ +-|.   ++.++.+..+...
T Consensus       175 ~l~~~il~~Nn~~D~~~D~~~Gk~Tl~v---~lG~~~a~~l~~~  215 (284)
T TIGR00751       175 LLACAVLNINNLRDIPTDARAGKNTLAV---RLGDARTRMYHQG  215 (284)
T ss_pred             HHHHHHHHHcCcccchhHHHcCCEeehh---hcchHhHHHHHHH
Confidence            44466667999999999998765 3332   4555666554433

This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.

>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase

Probab=83.64  E-value=6.1  Score=35.76  Aligned_cols=33  Identities=21%  Similarity=0.161  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHHhhcccChhhhhhcC-CCCccccc
Q 022643           44 PAVLMHIYVVAINQLSDVEVDKVNK-PYLPLASG   76 (294)
Q Consensus        44 ~~~l~~~a~~~iNd~~D~~~D~~n~-p~Rpi~sG   76 (294)
                      ..++.+..-..+||..|+|.|++.. |.-|+.-|
T Consensus       166 ~~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G  199 (282)
T TIGR01475       166 GVGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFG  199 (282)
T ss_pred             HHHHHHHHHHHHHHHhhHHhHHHcCCCchHHHhc
Confidence            4455556667799999999998754 56676666

A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.

>PRK13106 ubiA prenyltransferase; Reviewed

Probab=83.63  E-value=6.4  Score=36.15  Aligned_cols=35  Identities=17%  Similarity=0.233  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHHHhhcccChhhhhhcC-CCCccccc
Q 022643           42 LVPAVLMHIYVVAINQLSDVEVDKVNK-PYLPLASG   76 (294)
Q Consensus        42 ll~~~l~~~a~~~iNd~~D~~~D~~n~-p~Rpi~sG   76 (294)
                      .++.++.+.+-..+|+..|+|.|++.+ +.-|+.=|
T Consensus       183 ~~~~~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G  218 (300)
T PRK13106        183 VIGTILWAAGFDLYNHIPDAEFDREMGLHSFAVVLG  218 (300)
T ss_pred             HHHHHHHHHHHHHHHHccchhhHHHCCCCccHHHHh
Confidence            345566667777899999999998654 56666555

>PRK13592 ubiA prenyltransferase; Provisional

Probab=82.19  E-value=15  Score=33.69  Aligned_cols=42  Identities=14%  Similarity=0.212  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHhhcCChHhhHhcCCccchhhcc---HHHHHHHHHHH
Q 022643          180 SCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLG---KERVFRLSVSM  222 (294)
Q Consensus       180 ~~~~~~~~~i~d~~D~e~D~~~G~~Tlpv~~G---~~~a~~~~~~l  222 (294)
                      ++.+.+-..+||+.|+|-|+. ++..=|+-=|   +|.++.....+
T Consensus        56 f~~~~~gniiNDy~D~EIDrI-N~P~RPLPsG~VS~~~A~~~si~L  100 (299)
T PRK13592         56 FGFWMILRIADDFKDYETDRR-LFPHRALPSGRVKKKDLAIALSFI  100 (299)
T ss_pred             HHHHHHhHHHHHHhhHHHhhh-cCCCCCCCcCCCCHHHHHHHHHHH
Confidence            334455678999999999955 4555565444   45555554444

>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

Probab=81.86  E-value=10  Score=34.26  Aligned_cols=43  Identities=19%  Similarity=0.213  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHhhcCChHhhHhcCCccchhhcc---HHHHHHHHHHHH
Q 022643          180 SCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLG---KERVFRLSVSML  223 (294)
Q Consensus       180 ~~~~~~~~~i~d~~D~e~D~~~G~~Tlpv~~G---~~~a~~~~~~l~  223 (294)
                      .+...+-..+||+.|+|.|++.. +.=|..=|   +|.+......+.
T Consensus        47 ~l~~~~~~~iNd~~D~~iD~~~~-~~Rpl~sG~is~~~a~~~~~~l~   92 (279)
T PRK09573         47 FLVCAGGNVINDIYDIEIDKINK-PERPIPSGRISLKEAKIFSITLF   92 (279)
T ss_pred             HHHHHHHHHHHhhcccccccccC-CCCCcCCCccCHHHHHHHHHHHH
Confidence            33445567899999999999753 44454444   455554444433

>PRK12871 ubiA prenyltransferase; Reviewed

Probab=81.65  E-value=12  Score=34.30  Aligned_cols=35  Identities=17%  Similarity=0.187  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHHHhhcccChhhhhhcC-CCCcccccc
Q 022643           43 VPAVLMHIYVVAINQLSDVEVDKVNK-PYLPLASGE   77 (294)
Q Consensus        43 l~~~l~~~a~~~iNd~~D~~~D~~n~-p~Rpi~sG~   77 (294)
                      +..++.+..-...||+.|+|.|++++ |.-|+.-|+
T Consensus       182 ~~~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~  217 (297)
T PRK12871        182 VFFYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGM  217 (297)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHcCCeeeeeeech
Confidence            34556667777899999999999864 567776665

>PRK12887 ubiA tocopherol phytyltransferase; Reviewed

Probab=81.01  E-value=25  Score=32.39  Aligned_cols=24  Identities=21%  Similarity=0.332  Sum_probs=18.5

Q ss_pred             HHhhcCChHhhHhcCCccchhhccH
Q 022643          188 FIKDLHDVDGDKKFGIKTLSVMLGK  212 (294)
Q Consensus       188 ~i~d~~D~e~D~~~G~~Tlpv~~G~  212 (294)
                      .+||+.|+|-|+. ++++-|+.=|+
T Consensus        71 ~iNd~~D~~iD~i-nkp~rPiasG~   94 (308)
T PRK12887         71 GLNQLTDIEIDRI-NKPHLPLAAGE   94 (308)
T ss_pred             HHhhhhhHHHHhc-CCCCCCcCCcc
Confidence            3999999999985 45777765554

>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed

Probab=80.33  E-value=17  Score=32.87  Aligned_cols=35  Identities=11%  Similarity=0.052  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHHHhhcccChhhhhhcC-CCCcccccc
Q 022643           43 VPAVLMHIYVVAINQLSDVEVDKVNK-PYLPLASGE   77 (294)
Q Consensus        43 l~~~l~~~a~~~iNd~~D~~~D~~n~-p~Rpi~sG~   77 (294)
                      +..++-+..-...|++.|+|.|++.+ |.-|+.-|+
T Consensus       169 ~~~~~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~  204 (282)
T PRK12848        169 LANILWTVAYDTQYAMVDRDDDLKIGIKSTAILFGR  204 (282)
T ss_pred             HHHHHHHHHHHHHHHhccHhhHHHcCCccccHHhcc
Confidence            34455666666789999999999764 566666554

>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=80.02  E-value=20  Score=32.64  Aligned_cols=30  Identities=17%  Similarity=0.118  Sum_probs=20.5

Q ss_pred             HHHHHHHhhcCChHhhHhcCCc-cchhhccH
Q 022643          183 CVVIAFIKDLHDVDGDKKFGIK-TLSVMLGK  212 (294)
Q Consensus       183 ~~~~~~i~d~~D~e~D~~~G~~-Tlpv~~G~  212 (294)
                      ..+-..+||+.|.|-|++..|. .=|..=|+
T Consensus        59 ~~a~~~~Nd~~D~~iD~~~~Rt~~RPL~sG~   89 (290)
T PRK12870         59 SAAGCVVNDLWDRDIDPQVERTRFRPLASRR   89 (290)
T ss_pred             HHHHHHHHhHHHhccCCCCCcccCCCCCCCC
Confidence            3456789999999999865542 34544444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00