Citrus Sinensis ID: 022649

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290----
Protein Sequence
MANNPNEASSTDDFLEQILGIPNFGSAESGLAASDGGLAAGSPMMLQLSSGDGSSHISALGGGVSSGYHGQVFPLGLSLEQGKGGFLKPEEASGSGKRFPEEHAIKNVFHGQPLPSPVPAAPHPPAMRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRVGAPGAVAPLVTTDLPLSSVEDESGEGVRNQPAWEKWSNDGTERQVAKLMEENVGAAMQFLQSKALCIMPISLATAIYHSQPPESPNLVKPETNPPP
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcHHHHHHHccccccEEEEccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHHHHHHHccccccccccccccccccccccccHEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHcHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccHcHHHHHHHHHccccccccccccccccccc
Coil and Loop (DISEMBL)
mannpneasstddFLEQIlgipnfgsaesglaasdgglaagspmmlqlssgdgsshisalgggvssgyhgqvfplglsleqgkggflkpeeasgsgkrfpeehaiknvfhgqplpspvpaaphppamrprvrarrgqatdphSIAERLRRERIAERIRALQELvpsvnktdRAAMLDEIVDYVKFLRLQVKVLSmsrvgapgavaplvttdlplssvedesgegvrnqpawekwsndgtERQVAKLMEENVGAAMQFLQSKALCIMPISLATAiyhsqppespnlvkpetnppp
Flexible Loop (DISEMBL)
mannpneasstdDFLEQILGIPNFGSAESGLAASDGGLAAGSPMMLQLSSGDGSSHISALGGGVSSGYHGQVFPLGLSLEQGKGGFLKPEEASGSGKRFPEEHAIKNVFHGQPLPSPVPAAPHPPAMRPRVrarrgqatdphsiaerlrRERIAERIRAlqelvpsvnktdraAMLDEIVDYVKFLRLQVKVLSMSRVGAPGAVAPLVTTDLPLssvedesgegvrnqpawekwsndGTERQVAKLMEENVGAAMQFLQSKALCIMPISLATAIYhsqppespnlvkpetnppp
Low Complexity Region (SEG)
MANNPNEASSTDDFLEQILGIPNFgsaesglaasdgglaagsPMMLQLSSGDGSSHISALGGGVSSGYHGQVFPLGLSLEQGKGGFLKPEEASGSGKRFPEEHAIKNVFHGQplpspvpaaphppamrprvrarrgqaTDPHSiaerlrreriaeriralQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRVGAPGAVAPLVTTDLPLSSVEDESGEGVRNQPAWEKWSNDGTERQVAKLMEENVGAAMQFLQSKALCIMPISLATAIYHSQPPESPNLVKPETNPPP
Disordered region (IsUnstruct)
*****************ILGI**************************************************************************************************************************************RIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRVGAPGAVAPLVTTD**********************************LMEENVGAAMQFLQSKALCIMPISLATAIYH******************
Disordered Region (DISOPRED)
********************************************************************************************************************************************************IAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKV****************************************************************FLQSKALCIMPISLATAIY*******************
Disordered Region (DISEMBL)
***********DDFLEQILGIPNFGSAESGLAASDGGLAAGSPMMLQLSSGDGSSHISALGGGVSSGYHGQVFPLGLSLEQGKGGFLK*********RFPEEHAIKNVFHGQPLPSPVPAA********************HSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRVGAPGAVAPLVTTDLPLS************QPAWEKWSNDGTERQVAKLMEENVGAAMQFLQSKALCIMPISLATAIYHSQPPE*************
Disordered Region (DISPRO)
*******ASSTDDFLEQILGIPNFGSAESGLAASDGGLAAGSPMMLQLSSGD****I*ALGGGVSSGYHGQVFPLGL************************************************AMRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRVGAPGAVAPLVTTD*************************DGTERQVAKLMEENVGAAMQFLQSKALCIMPISLATAIYH******************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MANNPNEASSTDDFLEQILGIPNFGSAESGLAASDGGLAAGSPMMLQLSSGDGSSHISALGGGVSSGYHGQVFPLGLSLEQGKGGFLKPEEASGSGKRFPEEHAIKNVFHGQPLPSPVPAAPHPPAMRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRVGAPGAVAPLVTTDLPLSSVEDESGEGVRNQPAWEKWSNDGTERQVAKLMEENVGAAMQFLQSKALCIMPISLATAIYHSQPPESPNLVKPETNPPP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	294	2.2.26 [Sep-21-2011]
O22768	310	Transcription factor UNE1	yes	no	0.989	0.938	0.701	1e-102
Q93Y00	302	Transcription factor bHLH	no	no	0.962	0.937	0.667	2e-88
Q9ZUG9	350	Transcription factor bHLH	no	no	0.581	0.488	0.571	4e-47
Q8S3D5	310	Transcription factor bHLH	no	no	0.503	0.477	0.580	2e-46
Q9LSQ3	297	Transcription factor bHLH	no	no	0.527	0.521	0.563	4e-46
Q9FJL4	498	Transcription factor bHLH	no	no	0.251	0.148	0.613	4e-19
Q93W88	286	Transcription factor bHLH	no	no	0.275	0.283	0.546	9e-19
Q6NKN9	366	Transcription factor bHLH	no	no	0.326	0.262	0.495	5e-18
Q9LK48	371	Transcription factor bHLH	no	no	0.363	0.288	0.464	6e-18
Q9SRT2	456	Transcription factor bHLH	no	no	0.221	0.142	0.651	6e-18

>sp|O22768|UNE12_ARATH Transcription factor UNE12 OS=Arabidopsis thaliana GN=UNE12 PE=2 SV=2

 Score =  370 bits (949), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 216/308 (70%), Positives = 246/308 (79%), Gaps = 17/308 (5%)

Query: 2   ANNPNEASS----TDDFLEQILGIPNFG--SAESGLAASDGGLAAGSPMMLQLSSGDGSS 55
           +NNP++  S    +DDF EQILG+PNF   SA        G      PMMLQL SG+  S
Sbjct: 3   SNNPHDNLSDQTPSDDFFEQILGLPNFSASSAAGLSGVDGGLGGGAPPMMLQLGSGEEGS 62

Query: 56  HISALGGGVSSGYHGQVFPLGLSLEQGKG-GFLKPEEASGSGKRFPEE------HAIKNV 108
           H+  LGG   +G+H Q+FPLGLSL+QGKG GFL+PE   GSGKRF ++       ++K V
Sbjct: 63  HMGGLGGSGPTGFHNQMFPLGLSLDQGKGPGFLRPEGGHGSGKRFSDDVVDNRCSSMKPV 122

Query: 109 FHGQPLPSPVPAAPH-PPAMRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSV 167
           FHGQP+  P P+APH P ++RPRVRARRGQATDPHSIAERLRRERIAERIRALQELVP+V
Sbjct: 123 FHGQPMQQPPPSAPHQPTSIRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPTV 182

Query: 168 NKTDRAAMLDEIVDYVKFLRLQVKVLSMSRVGAPGAVAPLVTTDLPL-SSVEDESGEGVR 226
           NKTDRAAM+DEIVDYVKFLRLQVKVLSMSR+G  GAVAPLV TD+PL SSVEDE+GEG R
Sbjct: 183 NKTDRAAMIDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLV-TDMPLSSSVEDETGEGGR 241

Query: 227 N-QPAWEKWSNDGTERQVAKLMEENVGAAMQFLQSKALCIMPISLATAIYHSQPPESPNL 285
             QPAWEKWSNDGTERQVAKLMEENVGAAMQ LQSKALC+MPISLA AIYHSQPP++ ++
Sbjct: 242 TPQPAWEKWSNDGTERQVAKLMEENVGAAMQLLQSKALCMMPISLAMAIYHSQPPDTSSV 301

Query: 286 VKPETNPP 293
           VKPE NPP
Sbjct: 302 VKPENNPP 309

Required for ovule fertilization.
Arabidopsis thaliana (taxid: 3702)

>sp|Q93Y00|BH007_ARATH Transcription factor bHLH7 OS=Arabidopsis thaliana GN=BHLH7 PE=2 SV=1

 Score =  325 bits (833), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 209/313 (66%), Positives = 239/313 (76%), Gaps = 30/313 (9%)

Query: 1   MANNPN-------EASSTDDFLEQILGIPNFGSAESGLAASDGGLAAGSPMMLQLSSGD- 52
           MANN N       + S TDDF EQILG+ +  S  SG   S  G     PMMLQL SG+ 
Sbjct: 1   MANNNNIPHDSISDPSPTDDFFEQILGL-SNFSGSSGSGLSGIGGVGPPPMMLQLGSGNE 59

Query: 53  -GSSHISALGGGVSSGYHGQVFPLGLSLEQGKG-GFLKPEEASGSGKRFPEE------HA 104
              +H+ A+GGG   G+H Q+FPLGLSL+QGKG GFLKP+E   +GKRF ++       +
Sbjct: 60  GNHNHMGAIGGGGPVGFHNQMFPLGLSLDQGKGHGFLKPDE---TGKRFQDDVLDNRCSS 116

Query: 105 IKNVFHGQPLPSPVPAAPHPPA-MRPRVRARRGQATDPHSIAERLRRERIAERIRALQEL 163
           +K +FHGQP+  P P  PH  + +RPRVRARRGQATDPHSIAERLRRERIAERIR+LQEL
Sbjct: 117 MKPIFHGQPMSQPAPPMPHQQSTIRPRVRARRGQATDPHSIAERLRRERIAERIRSLQEL 176

Query: 164 VPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRVGAPGAVAPLVTTDLPL-SSVEDESG 222
           VP+VNKTDRAAM+DEIVDYVKFLRLQVKVLSMSR+G  GAVAPLV T++PL SSVEDE+ 
Sbjct: 177 VPTVNKTDRAAMIDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLV-TEMPLSSSVEDET- 234

Query: 223 EGVRNQPAWEKWSNDGTERQVAKLMEENVGAAMQFLQSKALCIMPISLATAIYHSQPPE- 281
                Q  WEKWSNDGTERQVAKLMEENVGAAMQ LQSKALCIMPISLA AIYHSQPP+ 
Sbjct: 235 -----QAVWEKWSNDGTERQVAKLMEENVGAAMQLLQSKALCIMPISLAMAIYHSQPPDT 289

Query: 282 SPNLVKPETNPPP 294
           S ++VKPE NPPP
Sbjct: 290 SSSIVKPEMNPPP 302

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZUG9|BH066_ARATH Transcription factor bHLH66 OS=Arabidopsis thaliana GN=BHLH66 PE=2 SV=1

 Score =  188 bits (478), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 100/175 (57%), Positives = 121/175 (69%), Gaps = 4/175 (2%)

Query: 124 PPAMRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYV 183
           PP  R ++RARRGQATDPHSIAERLRRERIAER++ALQELVP+ NKTD+A+MLDEI+DYV
Sbjct: 131 PPQSRTKIRARRGQATDPHSIAERLRRERIAERMKALQELVPNGNKTDKASMLDEIIDYV 190

Query: 184 KFLRLQVKVLSMSRVGAPGAVAPLVTTDLPLSSVEDESGEGVRNQPAWEKWSNDGTERQV 243
           KFL+LQVKVLSMSR+G   +V+  ++           +  G          S   TE QV
Sbjct: 191 KFLQLQVKVLSMSRLGGAASVSSQISEAGGSHGNASSAMVGGSQTAGNSNDSVTMTEHQV 250

Query: 244 AKLMEENVGAAMQFLQSKALCIMPISLATAI----YHSQPPESPNLVKPETNPPP 294
           AKLMEE++G+AMQ+LQ K LC+MPISLATAI     HS+ P  P  V     P P
Sbjct: 251 AKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHSRNPLIPGAVADVGGPSP 305

Arabidopsis thaliana (taxid: 3702)

>sp|Q8S3D5|BH069_ARATH Transcription factor bHLH69 OS=Arabidopsis thaliana GN=BHLH69 PE=2 SV=2

 Score =  186 bits (471), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 97/167 (58%), Positives = 120/167 (71%), Gaps = 19/167 (11%)

Query: 125 PAMRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVK 184
           P  +P+VRARRGQATDPHSIAERLRRERIAER+++LQELVP+ NKTD+A+MLDEI+DYVK
Sbjct: 124 PQTKPKVRARRGQATDPHSIAERLRRERIAERMKSLQELVPNGNKTDKASMLDEIIDYVK 183

Query: 185 FLRLQVKVLSMSRVGAPGAVAPLVTTDLPLSSVEDESGEGVRNQPAWEKWSNDG----TE 240
           FL+LQVKVLSMSR+G   + +  ++        ED  G       + E  S+ G    TE
Sbjct: 184 FLQLQVKVLSMSRLGGAASASSQIS--------EDAGG-------SHENTSSSGEAKMTE 228

Query: 241 RQVAKLMEENVGAAMQFLQSKALCIMPISLATAIYHSQPPESPNLVK 287
            QVAKLMEE++G+AMQ+LQ K LC+MPISLAT I  +  P     VK
Sbjct: 229 HQVAKLMEEDMGSAMQYLQGKGLCLMPISLATTISTATCPSRSPFVK 275

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LSQ3|BH082_ARATH Transcription factor bHLH82 OS=Arabidopsis thaliana GN=BHLH82 PE=2 SV=1

 Score =  185 bits (469), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 98/174 (56%), Positives = 122/174 (70%), Gaps = 19/174 (10%)

Query: 128 RPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLR 187
           +PRVRARRGQATDPHSIAERLRRERIAER+++LQELVP+ NKTD+A+MLDEI++YV+FL+
Sbjct: 96  KPRVRARRGQATDPHSIAERLRRERIAERMKSLQELVPNTNKTDKASMLDEIIEYVRFLQ 155

Query: 188 LQVKVLSMSRVGAPGAVAPLVTTDLPLSSVEDESG-------------EGVRNQPAWEKW 234
           LQVKVLSMSR+G  G+V P       L+ +  E+G              G  N       
Sbjct: 156 LQVKVLSMSRLGGAGSVGP------RLNGLSAEAGGRLNALTAPCNGLNGNGNATGSSNE 209

Query: 235 SNDGTERQVAKLMEENVGAAMQFLQSKALCIMPISLATAIYHSQPPESPNLVKP 288
           S   TE++VAKLMEE++G+AMQ+LQ K LC+MPISLATAI  S      +L  P
Sbjct: 210 SLRSTEQRVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISSSTTHSRGSLFNP 263

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJL4|BH078_ARATH Transcription factor bHLH78 OS=Arabidopsis thaliana GN=BHLH78 PE=2 SV=1

 Score = 95.5 bits (236), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 46/75 (61%), Positives = 58/75 (77%), Gaps = 1/75 (1%)

Query: 122 PHPPAMRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNK-TDRAAMLDEIV 180
           P PP     VRARRGQATD HS+AER+RRE+I ER++ LQ+LVP  NK T +A MLDEI+
Sbjct: 292 PEPPKDYIHVRARRGQATDSHSLAERVRREKIGERMKLLQDLVPGCNKVTGKALMLDEII 351

Query: 181 DYVKFLRLQVKVLSM 195
           +YV+ L+ QV+ LSM
Sbjct: 352 NYVQSLQRQVEFLSM 366

Arabidopsis thaliana (taxid: 3702)

>sp|Q93W88|BH137_ARATH Transcription factor bHLH137 OS=Arabidopsis thaliana GN=BHLH137 PE=2 SV=1

 Score = 94.4 bits (233), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 47/86 (54%), Positives = 63/86 (73%), Gaps = 5/86 (5%)

Query: 124 PPAMRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNK-TDRAAMLDEIVDY 182
           PP     VRARRGQATD HS+AER+RRE+I+ER+R LQ LVP  +K T +A MLDEI++Y
Sbjct: 129 PPTDYIHVRARRGQATDSHSLAERVRREKISERMRTLQNLVPGCDKVTGKALMLDEIINY 188

Query: 183 VKFLRLQVKVLSMSRVGAPGAVAPLV 208
           V+ L+ QV+ LSM       +++P+V
Sbjct: 189 VQTLQTQVEFLSMKLT----SISPVV 210

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NKN9|BH074_ARATH Transcription factor bHLH74 OS=Arabidopsis thaliana GN=BHLH74 PE=2 SV=1

 Score = 92.0 bits (227), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 50/101 (49%), Positives = 66/101 (65%), Gaps = 5/101 (4%)

Query: 131 VRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNK-TDRAAMLDEIVDYVKFLRLQ 189
           +RARRGQAT+ HS+AER+RRE+I+ER+R LQELVP  NK T +A MLDEI++YV+ L+ Q
Sbjct: 206 MRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQ 265

Query: 190 VKVLSMSRVGAPGAVAPLVTTDLPLSSVEDESGEGVRNQPA 230
           V+ LSM        V P +  D+     +D      RN P 
Sbjct: 266 VEFLSMKLA----TVNPEINIDIDRILAKDLLQSRDRNTPT 302

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LK48|BH077_ARATH Transcription factor bHLH77 OS=Arabidopsis thaliana GN=BHLH77 PE=2 SV=1

 Score = 91.7 bits (226), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 53/114 (46%), Positives = 69/114 (60%), Gaps = 7/114 (6%)

Query: 83  KGGFLKPEEASGSGKRFPEEHAIKNVFHGQPLPSPVPAAPHPPAMRPRVRARRGQATDPH 142
           KGG    ++ +GS K   E+   K        P      P  P     VRARRGQATD H
Sbjct: 149 KGGKRSKQDVAGSSKNGVEKCDSKGDNKDDAKP------PEAPKDYIHVRARRGQATDSH 202

Query: 143 SIAERLRRERIAERIRALQELVPSVNK-TDRAAMLDEIVDYVKFLRLQVKVLSM 195
           S+AER RRE+I+ER+  LQ+LVP  N+ T +A MLDEI++YV+ L+ QV+ LSM
Sbjct: 203 SLAERARREKISERMTLLQDLVPGCNRITGKAVMLDEIINYVQSLQRQVEFLSM 256

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SRT2|BH062_ARATH Transcription factor bHLH62 OS=Arabidopsis thaliana GN=BHLH62 PE=2 SV=1

 Score = 91.7 bits (226), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 43/66 (65%), Positives = 56/66 (84%), Gaps = 1/66 (1%)

Query: 131 VRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNK-TDRAAMLDEIVDYVKFLRLQ 189
           VRARRGQATD HS+AER+RRE+I+ER++ LQ+LVP  NK T +A MLDEI++YV+ L+ Q
Sbjct: 258 VRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQ 317

Query: 190 VKVLSM 195
           V+ LSM
Sbjct: 318 VEFLSM 323

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	294
255559915	299	DNA binding protein, putative [Ricinus c	0.976	0.959	0.792	1e-120
356572238	292	PREDICTED: transcription factor UNE12-li	0.969	0.976	0.759	1e-118
224066311	300	predicted protein [Populus trichocarpa]	0.989	0.97	0.784	1e-117
356504971	292	PREDICTED: transcription factor UNE12-li	0.969	0.976	0.749	1e-114
223702398	297	putative basic helix-loop-helix protein	0.982	0.973	0.756	1e-114
225437207	289	PREDICTED: transcription factor UNE12 [V	0.959	0.975	0.755	1e-113
449458442	316	PREDICTED: transcription factor UNE12-li	0.989	0.920	0.727	1e-113
357440517	282	Transcription factor UNE12 [Medicago tru	0.945	0.985	0.748	1e-109
357440519	285	Transcription factor UNE12 [Medicago tru	0.945	0.975	0.734	1e-107
223702400	275	putative basic helix-loop-helix protein	0.914	0.978	0.711	1e-102

>gi|255559915|ref|XP_002520976.1| DNA binding protein, putative [Ricinus communis] gi|223539813|gb|EEF41393.1| DNA binding protein, putative [Ricinus communis]

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 241/304 (79%), Positives = 266/304 (87%), Gaps = 17/304 (5%)

Query: 1   MANNPNEASSTDDFLEQILGIPNFGSAES-GLAASDGGLAAGSPMMLQLSSGDGSSHISA 59
           MANNP E  + DDFL++ILG+PNF SA++ GL  +DG LA  +PMMLQLSSGDGS+HI+A
Sbjct: 1   MANNPTEPPA-DDFLQEILGLPNFASADAAGLVGADGALA--TPMMLQLSSGDGSNHITA 57

Query: 60  LGGGVSSG----YHGQVFPLGLSLEQGKGGFLKPEEASGSGKRFPEE------HAIKNVF 109
           LGGG   G    +HG  FPLGLSLEQGKGGFLKPEEASGSGKRF ++      + +KNVF
Sbjct: 58  LGGGGGGGGGAGFHG--FPLGLSLEQGKGGFLKPEEASGSGKRFRDDVVDGRANTVKNVF 115

Query: 110 HGQPLPSPVPAAPHPPAMRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNK 169
           HGQP+P+ + AAPHPP MRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNK
Sbjct: 116 HGQPMPTTMAAAPHPPTMRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNK 175

Query: 170 TDRAAMLDEIVDYVKFLRLQVKVLSMSRVGAPGAVAPLVTTDLPLSSVEDESGEGVRNQP 229
           TDRAAMLDEIVDYVKFLRLQVKVLSMSR+G  GAVAPLV TD+PLSSVEDE+GEG RNQP
Sbjct: 176 TDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLV-TDIPLSSVEDETGEGGRNQP 234

Query: 230 AWEKWSNDGTERQVAKLMEENVGAAMQFLQSKALCIMPISLATAIYHSQPPESPNLVKPE 289
           AWEKWSNDGTERQVAKLMEENVGAAMQFLQSKALCIMPISLATAIYH+Q P++  +VKPE
Sbjct: 235 AWEKWSNDGTERQVAKLMEENVGAAMQFLQSKALCIMPISLATAIYHTQAPDTSTIVKPE 294

Query: 290 TNPP 293
           TNPP
Sbjct: 295 TNPP 298

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356572238|ref|XP_003554277.1| PREDICTED: transcription factor UNE12-like [Glycine max]

 Score =  429 bits (1102), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 227/299 (75%), Positives = 262/299 (87%), Gaps = 14/299 (4%)

Query: 1   MANNPNEASSTDDFLEQILGIPNFGSAESGLAASDGGLAAGS---PMMLQLSSGDGSSHI 57
           MANNP++A + DDFLEQILG+PNF SA+SGL+A+D GLA  +   PMMLQL+S D ++H+
Sbjct: 1   MANNPSDAPA-DDFLEQILGLPNFASADSGLSAADVGLAGAATQAPMMLQLNSADANAHL 59

Query: 58  SALGGGVSSGYHGQVFPLGLSLEQGKGGFLKPEEASGSGKRFPEE---HAIKNVFHGQPL 114
           +       + +H  V+ LGLSL+QGKGGF+KPEEAS SGKRF ++   +  KNVFHGQP+
Sbjct: 60  AG------AAFHAPVYQLGLSLDQGKGGFMKPEEASASGKRFRDDVVDNRAKNVFHGQPM 113

Query: 115 PSPVPAAPHPPAMRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAA 174
           P+ +PAAPHPPA+RPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAA
Sbjct: 114 PTTMPAAPHPPAIRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAA 173

Query: 175 MLDEIVDYVKFLRLQVKVLSMSRVGAPGAVAPLVTTDLPLSSVEDESGEGVRNQPAWEKW 234
           MLDEIVDYVKFLRLQVKVLSMSR+G  GAVAPLV TD+PLSSVE+E GEG RN+PAW+KW
Sbjct: 174 MLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLV-TDIPLSSVEEEGGEGARNRPAWDKW 232

Query: 235 SNDGTERQVAKLMEENVGAAMQFLQSKALCIMPISLATAIYHSQPPESPNLVKPETNPP 293
           SNDGTERQVAKLMEENVGAAMQFLQSKALCIMPISLA+AIY SQPP++ ++VKPETNPP
Sbjct: 233 SNDGTERQVAKLMEENVGAAMQFLQSKALCIMPISLASAIYQSQPPDTSSIVKPETNPP 291

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224066311|ref|XP_002302077.1| predicted protein [Populus trichocarpa] gi|222843803|gb|EEE81350.1| predicted protein [Populus trichocarpa]

 Score =  426 bits (1094), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 236/301 (78%), Positives = 257/301 (85%), Gaps = 10/301 (3%)

Query: 1   MANNPNEASSTDDFLEQILGIPNFGSAESGLAASDGGLAAGS----PMMLQLSSGDGSSH 56
           MANNP E   TDDFL++ILG+PNF SAE+GL  +D GLA  +    PMMLQLSSGDGS H
Sbjct: 1   MANNPTE-PPTDDFLQEILGMPNFASAEAGLVGADAGLAGTASVQAPMMLQLSSGDGSGH 59

Query: 57  ISALGGGVSSGYHGQVFP-LGLSLEQGKGGFLKPEEASGSGKRFPEEHA---IKNVFHGQ 112
           ISALGG    G  G     LGLSLEQGKGGFLKPEEASGSG RF ++     ++NVFHGQ
Sbjct: 60  ISALGGAPGGGGAGFHGFPLGLSLEQGKGGFLKPEEASGSGNRFRDDIVDGRVRNVFHGQ 119

Query: 113 PLPSPVPAAPHPPAMRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDR 172
           P+P+ V AA HPPAMRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDR
Sbjct: 120 PMPTTVTAATHPPAMRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDR 179

Query: 173 AAMLDEIVDYVKFLRLQVKVLSMSRVGAPGAVAPLVTTDLPLSSVEDESGEGVRNQPAWE 232
           AAMLDEIVDYVKFLRLQVK+LSMSR+G  GAVAPLV TD+PLS VEDE+GEG RNQ AWE
Sbjct: 180 AAMLDEIVDYVKFLRLQVKILSMSRLGGAGAVAPLV-TDIPLSPVEDETGEGGRNQLAWE 238

Query: 233 KWSNDGTERQVAKLMEENVGAAMQFLQSKALCIMPISLATAIYHSQPPESPNLVKPETNP 292
           KWSNDGTERQVAKLMEENVGAAMQFLQSKALCIMPI+LATAIYH+QPP++  +VKPETNP
Sbjct: 239 KWSNDGTERQVAKLMEENVGAAMQFLQSKALCIMPITLATAIYHTQPPDTTTIVKPETNP 298

Query: 293 P 293
           P
Sbjct: 299 P 299

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356504971|ref|XP_003521266.1| PREDICTED: transcription factor UNE12-like [Glycine max]

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 224/299 (74%), Positives = 259/299 (86%), Gaps = 14/299 (4%)

Query: 1   MANNPNEASSTDDFLEQILGIPNFGSAESGLAASDGGLAAG---SPMMLQLSSGDGSSHI 57
           MANNP++A + DDFLEQILG+P F SA+SGL+A+D GLA     SPMMLQLSS D ++H+
Sbjct: 1   MANNPSDAPA-DDFLEQILGLPTFASADSGLSAADVGLAGAATQSPMMLQLSSADANAHL 59

Query: 58  SALGGGVSSGYHGQVFPLGLSLEQGKGGFLKPEEASGSGKRFPEE---HAIKNVFHGQPL 114
           +       + +H  V+ LGLSLEQGKG F+KP+EAS SGKRF ++   +  K+VFHGQP+
Sbjct: 60  AG------ASFHAPVYQLGLSLEQGKGRFMKPDEASASGKRFRDDVVDNRAKHVFHGQPM 113

Query: 115 PSPVPAAPHPPAMRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAA 174
           P+ +PAAPHPPA+RPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAA
Sbjct: 114 PTTMPAAPHPPAIRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAA 173

Query: 175 MLDEIVDYVKFLRLQVKVLSMSRVGAPGAVAPLVTTDLPLSSVEDESGEGVRNQPAWEKW 234
           MLDEIVDYVKFLRLQVKVLSMSR+G  GAVAPLV TD+PLSSVE+E GEG RN+PAW+KW
Sbjct: 174 MLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLV-TDIPLSSVEEEGGEGARNRPAWDKW 232

Query: 235 SNDGTERQVAKLMEENVGAAMQFLQSKALCIMPISLATAIYHSQPPESPNLVKPETNPP 293
           SNDGTERQVAKLMEENVGAAMQFLQSKALCIMPISLA+AIY SQPP++ ++VK ET+PP
Sbjct: 233 SNDGTERQVAKLMEENVGAAMQFLQSKALCIMPISLASAIYQSQPPDTSSIVKHETSPP 291

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|223702398|gb|ACN21630.1| putative basic helix-loop-helix protein BHLH3 [Lotus japonicus]

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 227/300 (75%), Positives = 255/300 (85%), Gaps = 11/300 (3%)

Query: 1   MANNPNEASSTDDFLEQILGIPNFGSAESGLAASDGGLAAGSPMMLQLSSGDGSSHISAL 60
           MANNP++A + DDFLEQILG+P FGS +SGL   D GLA  +PMMLQL+S D  +H    
Sbjct: 1   MANNPSDAPAADDFLEQILGLPPFGSGDSGLVGPDIGLAGTAPMMLQLNSADHGNHHHLA 60

Query: 61  GGGVSSGYHGQVFPLGLSLEQGK----GGFLKPEEASGSGKRFPEEHAI---KNVFHGQP 113
            GG    +H  V+ LGLSL+QGK    GGFLKPE+ASGSGKRF ++      KNV+HGQP
Sbjct: 61  AGGP---FHAPVYQLGLSLDQGKVVGGGGFLKPEDASGSGKRFRDDVVDGRPKNVYHGQP 117

Query: 114 LPSPVPAAPHPPAMRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRA 173
           + + +PAAPHPPAMRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRA
Sbjct: 118 MSTTMPAAPHPPAMRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRA 177

Query: 174 AMLDEIVDYVKFLRLQVKVLSMSRVGAPGAVAPLVTTDLPLSSVEDESGEGVRNQPAWEK 233
           AMLDEIVDYVKFLRLQVKVLSMSR+G  GAVAPLV TD+PLSSVE+E GEG RN+PAW+K
Sbjct: 178 AMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLV-TDIPLSSVEEEGGEGARNRPAWDK 236

Query: 234 WSNDGTERQVAKLMEENVGAAMQFLQSKALCIMPISLATAIYHSQPPESPNLVKPETNPP 293
           WSNDGTE+QVAKLMEENVGAAMQFLQSKALCIMPISLA+AIY SQPP+S ++VKPETNPP
Sbjct: 237 WSNDGTEKQVAKLMEENVGAAMQFLQSKALCIMPISLASAIYQSQPPDSSSMVKPETNPP 296

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225437207|ref|XP_002281626.1| PREDICTED: transcription factor UNE12 [Vitis vinifera] gi|297735488|emb|CBI17928.3| unnamed protein product [Vitis vinifera]

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 226/299 (75%), Positives = 253/299 (84%), Gaps = 17/299 (5%)

Query: 1   MANNPNEASSTDDFLEQILGIPNFGSAESGLAASDGGLAAGSPMMLQLSSGDGSSHISAL 60
           MA+NP+EA + DDFLEQILGIP + +A+  LAA+D  LAA  PM+LQL SG+GS HI+  
Sbjct: 1   MASNPSEAPA-DDFLEQILGIPTYPAADPNLAANDVNLAA--PMVLQLGSGEGSGHIAG- 56

Query: 61  GGGVSSGYHGQVFPLGLSLEQGKGGFLKPEEASGSGKRFPEE------HAIKNVFHGQPL 114
                 GY G +FPLGL LEQGK  FLKPE+ASGSGKRF EE        +KN FHGQP+
Sbjct: 57  ------GYQGTMFPLGLRLEQGKSSFLKPEDASGSGKRFREEVIDGRASTVKNAFHGQPM 110

Query: 115 PSPVPAAPHPPAMRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAA 174
            + V AAPHPPA+RPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAA
Sbjct: 111 QATVAAAPHPPAIRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAA 170

Query: 175 MLDEIVDYVKFLRLQVKVLSMSRVGAPGAVAPLVTTDLPLSSVEDESGEGVRNQPAWEKW 234
           MLDEIVDYVKFLRLQVKVLSMSR+G  GAVAPLV TD+PL+SVE+E+ EG RN+PAWEKW
Sbjct: 171 MLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLV-TDIPLASVEEEASEGGRNEPAWEKW 229

Query: 235 SNDGTERQVAKLMEENVGAAMQFLQSKALCIMPISLATAIYHSQPPESPNLVKPETNPP 293
           SNDGTERQVAKLMEENVGAAMQFLQSKALCIMPISLA+AIYHSQ P++  L+KP+TNPP
Sbjct: 230 SNDGTERQVAKLMEENVGAAMQFLQSKALCIMPISLASAIYHSQQPDTTPLIKPQTNPP 288

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458442|ref|XP_004146956.1| PREDICTED: transcription factor UNE12-like [Cucumis sativus] gi|449503810|ref|XP_004162188.1| PREDICTED: transcription factor UNE12-like [Cucumis sativus]

 Score =  412 bits (1060), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 232/319 (72%), Positives = 260/319 (81%), Gaps = 28/319 (8%)

Query: 1   MANNPNEASSTDDFLEQILGIPNFGSAESGLAASDGGLAAGS----------------PM 44
           MANN ++ +  DDFLEQILGIP FGS++ GLA +DGGLA  +                PM
Sbjct: 1   MANNHSD-TQADDFLEQILGIP-FGSSDQGLAGTDGGLAGAAAAAAAAAAAVAAQGQAPM 58

Query: 45  MLQLSSGDGSSHISALGGGV--SSGYHGQV-FPLGLSLEQGKGGFLKPEEASGSGKRFPE 101
           MLQLSSGDG  HI+ +G G    +G+HG   FPLGLSL+QGK GFLK EEASGSGKR+  
Sbjct: 59  MLQLSSGDGGGHITTIGSGSVGGTGFHGGPPFPLGLSLDQGKSGFLKAEEASGSGKRYCG 118

Query: 102 E------HAIKNVFHGQPLPSPVPAAPHPPAMRPRVRARRGQATDPHSIAERLRRERIAE 155
           E       ++KNVF GQ + + + AAPHPPAMRPRVRARRGQATDPHSIAERLRRERIAE
Sbjct: 119 EVVDVRASSVKNVFQGQQMHAAMGAAPHPPAMRPRVRARRGQATDPHSIAERLRRERIAE 178

Query: 156 RIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRVGAPGAVAPLVTTDLPLS 215
           RIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSR+G  GAVAPLV TD+PLS
Sbjct: 179 RIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLV-TDIPLS 237

Query: 216 SVEDESGEGVRNQPAWEKWSNDGTERQVAKLMEENVGAAMQFLQSKALCIMPISLATAIY 275
           SVE+E  EG RNQPAW+KWSNDGTERQVAKLMEENVGAAMQFLQSKALCIMPISLA+AIY
Sbjct: 238 SVEEEGSEGGRNQPAWDKWSNDGTERQVAKLMEENVGAAMQFLQSKALCIMPISLASAIY 297

Query: 276 HSQPPESPNLVKPETNPPP 294
           H+QPP+S ++VKPE+NPPP
Sbjct: 298 HTQPPDSSSVVKPESNPPP 316

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357440517|ref|XP_003590536.1| Transcription factor UNE12 [Medicago truncatula] gi|355479584|gb|AES60787.1| Transcription factor UNE12 [Medicago truncatula]

 Score =  399 bits (1025), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 223/298 (74%), Positives = 249/298 (83%), Gaps = 20/298 (6%)

Query: 1   MANNPNEASSTDDFLEQILGIPNFGSAESGLAASDGGLAAGSPMMLQLSSGDGSSHISAL 60
           MAN+P++ +  DDFLEQILG+PNF SA+   A         SPMMLQL+SGD +SH+ A 
Sbjct: 1   MANHPSD-TPADDFLEQILGLPNFTSADGTDA---------SPMMLQLNSGDAASHLGAG 50

Query: 61  GGGVSSGYHGQVFPLGLSLEQGKGG-FLKPEEASGSGKRFPEEHAI---KNVFHGQPLPS 116
           GG     +H  V+ LGLSL+QGKGG FLKP+EASGSGKRF E+      KN FHGQP+P+
Sbjct: 51  GG-----FHAPVYHLGLSLDQGKGGGFLKPDEASGSGKRFREDLVDTRPKNTFHGQPMPT 105

Query: 117 PVPAAPHPPAMRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAML 176
            VPAAP PPAMRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAML
Sbjct: 106 TVPAAPQPPAMRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAML 165

Query: 177 DEIVDYVKFLRLQVKVLSMSRVGAPGAVAPLVTTDLPLSSVEDESGEGVRNQPAWEKWSN 236
           DEIVDYVKFLRLQVKVLSMSR+G  GAVAPLV TD+PLSSVE+E  +  RNQPAWEKWSN
Sbjct: 166 DEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLV-TDIPLSSVEEEGSDSGRNQPAWEKWSN 224

Query: 237 DGTERQVAKLMEENVGAAMQFLQSKALCIMPISLATAIYHSQPPESPNLVKPETNPPP 294
           DGTE+QVAKLMEENVGAAMQFLQSKALCIMPISLA+AIY SQP ++ ++VKPET PPP
Sbjct: 225 DGTEKQVAKLMEENVGAAMQFLQSKALCIMPISLASAIYQSQPSDNSSIVKPETIPPP 282

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357440519|ref|XP_003590537.1| Transcription factor UNE12 [Medicago truncatula] gi|355479585|gb|AES60788.1| Transcription factor UNE12 [Medicago truncatula]

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 221/301 (73%), Positives = 247/301 (82%), Gaps = 23/301 (7%)

Query: 1   MANNPNEASSTDDFLEQILGIPNFGSAESGLAASDGGLAAGSPMMLQLSSGDGSSHISAL 60
           MAN+P++ +  DDFLEQILG+PNF SA+   A         SPMMLQL+SGD +SH+ A 
Sbjct: 1   MANHPSD-TPADDFLEQILGLPNFTSADGTDA---------SPMMLQLNSGDAASHLGAG 50

Query: 61  GGGVSSGYHGQVFPLGLSLEQGKGG-FLKPEEASGSGKRFPEE------HAIKNVFHGQP 113
           GG     +H  V+ LGLSL+QGKGG FLKP+EASGSGKRF E+            FHGQP
Sbjct: 51  GG-----FHAPVYHLGLSLDQGKGGGFLKPDEASGSGKRFREDLVDTRPKNFLQTFHGQP 105

Query: 114 LPSPVPAAPHPPAMRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRA 173
           +P+ VPAAP PPAMRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRA
Sbjct: 106 MPTTVPAAPQPPAMRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRA 165

Query: 174 AMLDEIVDYVKFLRLQVKVLSMSRVGAPGAVAPLVTTDLPLSSVEDESGEGVRNQPAWEK 233
           AMLDEIVDYVKFLRLQVKVLSMSR+G  GAVAPLV TD+PLSSVE+E  +  RNQPAWEK
Sbjct: 166 AMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLV-TDIPLSSVEEEGSDSGRNQPAWEK 224

Query: 234 WSNDGTERQVAKLMEENVGAAMQFLQSKALCIMPISLATAIYHSQPPESPNLVKPETNPP 293
           WSNDGTE+QVAKLMEENVGAAMQFLQSKALCIMPISLA+AIY SQP ++ ++VKPET PP
Sbjct: 225 WSNDGTEKQVAKLMEENVGAAMQFLQSKALCIMPISLASAIYQSQPSDNSSIVKPETIPP 284

Query: 294 P 294
           P
Sbjct: 285 P 285

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|223702400|gb|ACN21631.1| putative basic helix-loop-helix protein BHLH4 [Lotus japonicus]

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 212/298 (71%), Positives = 241/298 (80%), Gaps = 29/298 (9%)

Query: 1   MANNPNEASSTDDFLEQILGIPNFGSAESGLAASDGGLAAGSPMMLQLSSGDGSSHISAL 60
           MAN+P++A + DDFLEQILG+PNF SA+   A+S       +PMMLQL+SGD      A 
Sbjct: 1   MANHPSDAPAADDFLEQILGLPNFASADGTDASS-----LHAPMMLQLNSGD-----LAA 50

Query: 61  GGGVSSGYHGQVFPLGLSLEQGKGG-FLKPEEASGSGKRFPEEHAI----KNVFHGQPLP 115
           GG   +G+H  V+ LGLSL+QGKGG FLKP++ASGSG RF E+  +    KN FHGQP+P
Sbjct: 51  GG---AGFHSPVYQLGLSLDQGKGGGFLKPDDASGSGNRFREDVVVGARHKNAFHGQPMP 107

Query: 116 SPVPAAPHPPAMRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAM 175
           + VP+APHPP MRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRA M
Sbjct: 108 TTVPSAPHPPPMRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAVM 167

Query: 176 LDEIVDYVKFLRLQVKVLSMSRVGAPGAVAPLVTTDLPLSSVEDESGEGVRNQPAWEKWS 235
           LDEIVDYVKFLRLQVKVLSMSR+G  GAVAPL           +E GEG RNQPAWEKWS
Sbjct: 168 LDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPL-----------EEGGEGGRNQPAWEKWS 216

Query: 236 NDGTERQVAKLMEENVGAAMQFLQSKALCIMPISLATAIYHSQPPESPNLVKPETNPP 293
           NDGTE+QVAKLMEEN+GAAMQFLQSKALCIMPISLA+AIY SQP E+ ++VKPET+PP
Sbjct: 217 NDGTEKQVAKLMEENIGAAMQFLQSKALCIMPISLASAIYQSQPSENSSIVKPETSPP 274

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	294
TAIR|locus:2132303	310	UNE12 "AT4G02590" [Arabidopsis	0.989	0.938	0.577	6.6e-81
TAIR|locus:2007534	302	AT1G03040 "AT1G03040" [Arabido	0.962	0.937	0.559	8.4e-74
UNIPROTKB|Q7Y1H4	294	OSJNBa0094F01.11 "Putative unc	0.520	0.520	0.645	8.7e-49
TAIR|locus:2047555	350	LRL1 "AT2G24260" [Arabidopsis	0.789	0.662	0.387	5.6e-29
UNIPROTKB|Q6EPZ6	499	P0014G10.34 "BHLH transcriptio	0.465	0.274	0.5	9.1e-29
UNIPROTKB|Q6K8Y4	463	OJ1695_H09.18 "Basic helix-loo	0.387	0.246	0.585	7.7e-28
TAIR|locus:2126624	310	LRL2 "AT4G30980" [Arabidopsis	0.486	0.461	0.477	2.2e-27
UNIPROTKB|Q6Z7E7	524	P0020C11.18 "Putative bHLH tra	0.510	0.286	0.475	7e-27
UNIPROTKB|Q69Y51	401	P0698A06.26-2 "Putative bHLH t	0.513	0.376	0.454	7.3e-27
TAIR|locus:2147760	297	LRL3 "AT5G58010" [Arabidopsis	0.510	0.505	0.464	7.3e-27

TAIR|locus:2132303 UNE12 "AT4G02590" [Arabidopsis thaliana (taxid:3702)]

 Score = 812 (290.9 bits), Expect = 6.6e-81, P = 6.6e-81
 Identities = 178/308 (57%), Positives = 204/308 (66%)

Query:     2 ANNPNEASS----TDDFLEQILGIPNFXXXXXXXXXXXXXXXXXX--PMMLQLSSGDGSS 55
             +NNP++  S    +DDF EQILG+PNF                    PMMLQL SG+  S
Sbjct:     3 SNNPHDNLSDQTPSDDFFEQILGLPNFSASSAAGLSGVDGGLGGGAPPMMLQLGSGEEGS 62

Query:    56 HISALGGGVSSGYHGQVFPLGLSLEQGKG-GFLKPEEASGSGKRFPEE------HAIKNV 108
             H+  LGG   +G+H Q+FPLGLSL+QGKG GFL+PE   GSGKRF ++       ++K V
Sbjct:    63 HMGGLGGSGPTGFHNQMFPLGLSLDQGKGPGFLRPEGGHGSGKRFSDDVVDNRCSSMKPV 122

Query:   109 FHGQXXXXXXXXXXXXXXXXX-XXXXXXXXXTDPHSXXXXXXXXXXXXXXXXXQELVPSV 167
             FHGQ                           TDPHS                 QELVP+V
Sbjct:   123 FHGQPMQQPPPSAPHQPTSIRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPTV 182

Query:   168 NKTDRAAMLDEIVDYVKFLRLQVKVLSMSRVGAPGAVAPLVTTDLPLSS-VEDESGEGVR 226
             NKTDRAAM+DEIVDYVKFLRLQVKVLSMSR+G  GAVAPLVT D+PLSS VEDE+GEG R
Sbjct:   183 NKTDRAAMIDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVT-DMPLSSSVEDETGEGGR 241

Query:   227 N-QPAWEKWSNDGTERQVAKLMEENVGAAMQFLQSKALCIMPISLATAIYHSQPPESPNL 285
               QPAWEKWSNDGTERQVAKLMEENVGAAMQ LQSKALC+MPISLA AIYHSQPP++ ++
Sbjct:   242 TPQPAWEKWSNDGTERQVAKLMEENVGAAMQLLQSKALCMMPISLAMAIYHSQPPDTSSV 301

Query:   286 VKPETNPP 293
             VKPE NPP
Sbjct:   302 VKPENNPP 309

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009567 "double fertilization forming a zygote and endosperm" evidence=IMP

GO:0031347 "regulation of defense response" evidence=IMP

TAIR|locus:2007534 AT1G03040 "AT1G03040" [Arabidopsis thaliana (taxid:3702)]

 Score = 745 (267.3 bits), Expect = 8.4e-74, P = 8.4e-74
 Identities = 175/313 (55%), Positives = 201/313 (64%)

Query:     1 MANNPN-------EASSTDDFLEQILGIPNFXXXXXXXXXXXXXXXXXXPMMLQLSSG-D 52
             MANN N       + S TDDF EQILG+ NF                  PMMLQL SG +
Sbjct:     1 MANNNNIPHDSISDPSPTDDFFEQILGLSNFSGSSGSGLSGIGGVGPP-PMMLQLGSGNE 59

Query:    53 GS-SHISALGGGVSSGYHGQVFPLGLSLEQGKG-GFLKPEEASGSGKRFPEE------HA 104
             G+ +H+ A+GGG   G+H Q+FPLGLSL+QGKG GFLKP+E   +GKRF ++       +
Sbjct:    60 GNHNHMGAIGGGGPVGFHNQMFPLGLSLDQGKGHGFLKPDE---TGKRFQDDVLDNRCSS 116

Query:   105 IKNVFHGQXXXXXXXXXXXXXXXXX-XXXXXXXXXTDPHSXXXXXXXXXXXXXXXXXQEL 163
             +K +FHGQ                           TDPHS                 QEL
Sbjct:   117 MKPIFHGQPMSQPAPPMPHQQSTIRPRVRARRGQATDPHSIAERLRRERIAERIRSLQEL 176

Query:   164 VPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRVGAPGAVAPLVTTDLPLSS-VEDESG 222
             VP+VNKTDRAAM+DEIVDYVKFLRLQVKVLSMSR+G  GAVAPLVT ++PLSS VEDE+ 
Sbjct:   177 VPTVNKTDRAAMIDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVT-EMPLSSSVEDET- 234

Query:   223 EGVRNQPAWEKWSNDGTERQVAKLMEENVGAAMQFLQSKALCIMPISLATAIYHSQPPE- 281
                  Q  WEKWSNDGTERQVAKLMEENVGAAMQ LQSKALCIMPISLA AIYHSQPP+ 
Sbjct:   235 -----QAVWEKWSNDGTERQVAKLMEENVGAAMQLLQSKALCIMPISLAMAIYHSQPPDT 289

Query:   282 SPNLVKPETNPPP 294
             S ++VKPE NPPP
Sbjct:   290 SSSIVKPEMNPPP 302

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

UNIPROTKB|Q7Y1H4 OSJNBa0094F01.11 "Putative uncharacterized protein OSJNBa0094F01.11" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 470 (170.5 bits), Expect = 8.7e-49, Sum P(2) = 8.7e-49
 Identities = 100/155 (64%), Positives = 112/155 (72%)

Query:   139 TDPHSXXXXXXXXXXXXXXXXXQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRV 198
             TDPHS                 QELVP+ NKTDRAAMLDEI+DYVKFLRLQVKVLSMSR+
Sbjct:   141 TDPHSIAERLRRERIAERMRALQELVPNTNKTDRAAMLDEILDYVKFLRLQVKVLSMSRL 200

Query:   199 GAPGAVAPLVTTDLPLSSVEDESGEGVRNQPAWEKWSNDGTERQVAKLMEENVGAAMQFL 258
             G  GAVA LV  D+PLS V+ E+ +   NQ  WEKWS DGTERQVAKLMEE++GAAMQFL
Sbjct:   201 GGAGAVAQLVA-DIPLS-VKGEASDSGGNQQIWEKWSTDGTERQVAKLMEEDIGAAMQFL 258

Query:   259 QSKALCIMPISLATAIYHSQPPESPNLVKPETNPP 293
             QSKALC+MPISLA AIY +Q  +    VK E N P
Sbjct:   259 QSKALCMMPISLAMAIYDTQQTQDGQPVKHEPNTP 293

GO:0005634 "nucleus" evidence=IC

TAIR|locus:2047555 LRL1 "AT2G24260" [Arabidopsis thaliana (taxid:3702)]

 Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
 Identities = 100/258 (38%), Positives = 127/258 (49%)

Query:    44 MMLQLSSGDGSSHISALGGGVSSGYHGQVFPLGLSLEQGKGGFLKPEEASGSGKRFPEEH 103
             MM+ L+  DGSS + AL  G S    G + P    + QG GG L  ++     +  P+  
Sbjct:    67 MMMPLN--DGSS-VHALYNGFSVA--GSL-P-NFQIPQGSGGGLMNQQGQTQTQTQPQAS 119

Query:   104 AIKNVFHGQXXXXXXXXXXXXXXXXXXXXXXXXXXTDPHSXXXXXXXXXXXXXXXXXQEL 163
             A                                  TDPHS                 QEL
Sbjct:   120 A---------STATGGTVAAPPQSRTKIRARRGQATDPHSIAERLRRERIAERMKALQEL 170

Query:   164 VPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRVGAPGAVAPLVTTDLPLSSVEDESGE 223
             VP+ NKTD+A+MLDEI+DYVKFL+LQVKVLSMSR+G   +V+  ++ +   S     S  
Sbjct:   171 VPNGNKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAASVSSQIS-EAGGSHGNASSAM 229

Query:   224 GVRNQPAWEKWSNDG---TERQVAKLMEENVGAAMQFLQSKALCIMPISLATAIY----H 276
                +Q A    SND    TE QVAKLMEE++G+AMQ+LQ K LC+MPISLATAI     H
Sbjct:   230 VGGSQTAGN--SNDSVTMTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCH 287

Query:   277 SQPPESPNLVKPETNPPP 294
             S+ P  P  V     P P
Sbjct:   288 SRNPLIPGAVADVGGPSP 305

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0080147 "root hair cell development" evidence=IMP

UNIPROTKB|Q6EPZ6 P0014G10.34 "BHLH transcription factor PTF1-like protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 296 (109.3 bits), Expect = 9.1e-29, Sum P(2) = 9.1e-29
 Identities = 81/162 (50%), Positives = 96/162 (59%)

Query:   139 TDPHSXXXXXXXXXXXXXXXXXQELVPSVNK---TDRAAMLDEIVDYVKFLRLQVK---- 191
             TDPHS                 QELVP+ NK   TD+A+MLDEI+DYVKFL+LQVK    
Sbjct:   258 TDPHSIAERLRRERIAERMKALQELVPNANKLMQTDKASMLDEIIDYVKFLQLQVKASTY 317

Query:   192 ------VLSMSRVGAPGAVAPLVTTDLPLSSVEDESGEGVRNQPAWEKWSNDG---TERQ 242
                   VLSMSR+G   AVAPLV  D+   S E   G G  N  A     +D    TE+Q
Sbjct:   318 TKLLIHVLSMSRLGGAAAVAPLVA-DM---SSEGRGG-GAANGGAPAAAGSDSLTVTEQQ 372

Query:   243 VAKLMEENVGAAMQFLQSKALCIMPISLATAIY----HSQPP 280
             VAKLMEE++G AMQ+LQ K LC+MPISLA+AI     H +PP
Sbjct:   373 VAKLMEEDMGTAMQYLQGKGLCLMPISLASAISSATCHLRPP 414

GO:0005634 "nucleus" evidence=IC

UNIPROTKB|Q6K8Y4 OJ1695_H09.18 "Basic helix-loop-helix (BHLH)-like" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 312 (114.9 bits), Expect = 7.7e-28, P = 7.7e-28
 Identities = 72/123 (58%), Positives = 87/123 (70%)

Query:   161 QELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRVGAPGAVAPLVTTDLPLSS---- 216
             QELVP+ NKTD+A+MLDEI+DYVKFL+LQVKVLSMSR+G   AVAPLV      S+    
Sbjct:   264 QELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGASAVAPLVANMSSESNGNGN 323

Query:   217 VEDESGEGVRNQPAWEKWSNDG-----TERQVAKLMEENVGAAMQFLQSKALCIMPISLA 271
                 SG G     +    +N G     TE+QVAKLMEE++G+AMQ+LQ K LC+MPISLA
Sbjct:   324 ATSSSGNGEAANGSSNGDNNGGGTLRVTEQQVAKLMEEDMGSAMQYLQGKGLCLMPISLA 383

Query:   272 TAI 274
             TAI
Sbjct:   384 TAI 386

GO:0005634 "nucleus" evidence=IC

TAIR|locus:2126624 LRL2 "AT4G30980" [Arabidopsis thaliana (taxid:3702)]

 Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
 Identities = 74/155 (47%), Positives = 92/155 (59%)

Query:   139 TDPHSXXXXXXXXXXXXXXXXXQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRV 198
             TDPHS                 QELVP+ NKTD+A+MLDEI+DYVKFL+LQVKVLSMSR+
Sbjct:   138 TDPHSIAERLRRERIAERMKSLQELVPNGNKTDKASMLDEIIDYVKFLQLQVKVLSMSRL 197

Query:   199 GAPGAVAPLVTTDLPLSSVEDESGEGVRNQPAWEKWSNDGTERQVAKLMEENVGAAMQFL 258
             G   + +  ++ D    S E+ S  G              TE QVAKLMEE++G+AMQ+L
Sbjct:   198 GGAASASSQISEDAG-GSHENTSSSGEAKM----------TEHQVAKLMEEDMGSAMQYL 246

Query:   259 QSKALCIMPISLATAIYHSQPPESPNLVKPETNPP 293
             Q K LC+MPISLAT I  +  P     VK +T  P
Sbjct:   247 QGKGLCLMPISLATTISTATCPSRSPFVK-DTGVP 280

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0080147 "root hair cell development" evidence=IMP

UNIPROTKB|Q6Z7E7 P0020C11.18 "Putative bHLH transcription factor PTF1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 307 (113.1 bits), Expect = 7.0e-27, P = 7.0e-27
 Identities = 79/166 (47%), Positives = 102/166 (61%)

Query:   139 TDPHSXXXXXXXXXXXXXXXXXQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRV 198
             TDPHS                 QELVP+ NKT++A+MLDEI+DYVKFL+LQVKVLSMSR+
Sbjct:   322 TDPHSIAERLRREKISDRMKDLQELVPNSNKTNKASMLDEIIDYVKFLQLQVKVLSMSRL 381

Query:   199 GAPGAVAPLVT---TDLP-------LSSVEDESGEGV--RNQPAWEKWSNDGT---ERQV 243
             GA  AV PL+T   T+ P        SS E ++G G      P  +    DG    E++V
Sbjct:   382 GAAEAVVPLLTETQTESPGFLLSPRSSSGERQAGAGAVTGGLPGDQPELLDGGAMFEQEV 441

Query:   244 AKLMEENVGAAMQFLQSKALCIMPISLATAIYHSQPPESPNLVKPE 289
              KLME+N+  AMQ+LQSK LC+MP++LA+AI  +Q   S   V+PE
Sbjct:   442 VKLMEDNMTTAMQYLQSKGLCLMPVALASAI-SAQKGTSSAAVRPE 486

GO:0005634 "nucleus" evidence=IC

UNIPROTKB|Q69Y51 P0698A06.26-2 "Putative bHLH transcription factor PTF1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
 Identities = 70/154 (45%), Positives = 94/154 (61%)

Query:   139 TDPHSXXXXXXXXXXXXXXXXXQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRV 198
             TDPHS                 Q LVP+ NK D+A+MLDEI+DYVKFL+LQVKVLSMSR+
Sbjct:   247 TDPHSIAERLRREKISERMKNLQVLVPNSNKADKASMLDEIIDYVKFLQLQVKVLSMSRL 306

Query:   199 GAPGAVAPLVT-TDLPLSSVEDESGEGVRNQPAWEKWSNDGT--ERQVAKLMEENVGAAM 255
             GAPGAV PL+  +     S    S   +   P     S D +  E++V KLME ++ +AM
Sbjct:   307 GAPGAVLPLLRESQTECHSNPSLSASTISQGPPDMPDSEDSSAFEQEVVKLMETSIISAM 366

Query:   256 QFLQSKALCIMPISLATAIYHSQPPESPNLVKPE 289
             Q+LQ+K LC+MPI+LA+AI + +   +   + PE
Sbjct:   367 QYLQNKGLCLMPIALASAISNQKGMAAAAAIPPE 400

GO:0005634 "nucleus" evidence=IC

TAIR|locus:2147760 LRL3 "AT5G58010" [Arabidopsis thaliana (taxid:3702)]

 Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
 Identities = 73/157 (46%), Positives = 95/157 (60%)

Query:   139 TDPHSXXXXXXXXXXXXXXXXXQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRV 198
             TDPHS                 QELVP+ NKTD+A+MLDEI++YV+FL+LQVKVLSMSR+
Sbjct:   107 TDPHSIAERLRRERIAERMKSLQELVPNTNKTDKASMLDEIIEYVRFLQLQVKVLSMSRL 166

Query:   199 GAPGAVAPLVT-----TDLPLSSVEDE-SG-EGVRNQPAWEKWSNDGTERQVAKLMEENV 251
             G  G+V P +          L+++    +G  G  N       S   TE++VAKLMEE++
Sbjct:   167 GGAGSVGPRLNGLSAEAGGRLNALTAPCNGLNGNGNATGSSNESLRSTEQRVAKLMEEDM 226

Query:   252 GAAMQFLQSKALCIMPISLATAIYHSQPPESPNLVKP 288
             G+AMQ+LQ K LC+MPISLATAI  S      +L  P
Sbjct:   227 GSAMQYLQGKGLCLMPISLATAISSSTTHSRGSLFNP 263

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0080147 "root hair cell development" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O22768	UNE12_ARATH	No assigned EC number	0.7012	0.9897	0.9387	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pm.C_LG_II0214 hypothetical protein (300 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	294
cd00083	60	cd00083, HLH, Helix-loop-helix domain, found in sp	5e-11
smart00353	53	smart00353, HLH, helix loop helix domain	1e-10
pfam00010	52	pfam00010, HLH, Helix-loop-helix DNA-binding domai	8e-09

>gnl|CDD|238036 cd00083, HLH, Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long

 Score = 56.8 bits (138), Expect = 5e-11
 Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 3/60 (5%)

Query: 135 RGQATDPHSIAERLRRERIAERIRALQELVPSV---NKTDRAAMLDEIVDYVKFLRLQVK 191
           R    + H++ ER RRERI +    L+ L+P++    K  +A +L + VDY+K L+  ++
Sbjct: 1   RKSRREAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELLQ 60

A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and have a PAS domain which allows the dimerization between PAS proteins, the binding of small molecules (e.g., dioxin), and interactions with non-PAS proteins. Length = 60

>gnl|CDD|197674 smart00353, HLH, helix loop helix domain

 Score = 55.7 bits (135), Expect = 1e-10
 Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 3/52 (5%)

Query: 143 SIAERLRRERIAERIRALQELVPSVN---KTDRAAMLDEIVDYVKFLRLQVK 191
           +  ER RR +I E    L+ L+P++    K  +A +L   ++Y+K L+ +++
Sbjct: 1   NARERRRRRKINEAFDELRSLLPTLPKNKKLSKAEILRLAIEYIKSLQEELQ 52

Length = 53

>gnl|CDD|215654 pfam00010, HLH, Helix-loop-helix DNA-binding domain

 Score = 50.5 bits (122), Expect = 8e-09
 Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 2/48 (4%)

Query: 142 HSIAERLRRERIAERIRALQELVPSVN--KTDRAAMLDEIVDYVKFLR 187
           H+  ER RR+RI +    L+EL+P+    K  +A +L   ++Y+K L+
Sbjct: 5   HNERERRRRDRINDAFEELRELLPTPPNKKLSKAEILRLAIEYIKHLQ 52

Length = 52

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	294
cd00083	60	HLH Helix-loop-helix domain, found in specific DNA	99.39
smart00353	53	HLH helix loop helix domain.	99.34
PF00010	55	HLH: Helix-loop-helix DNA-binding domain only nucl	99.33
KOG1318	411	consensus Helix loop helix transcription factor EB	99.09
KOG4304	250	consensus Transcriptional repressors of the hairy/	98.69
KOG1319	229	consensus bHLHZip transcription factor BIGMAX [Tra	98.67
KOG3561	803	consensus Aryl-hydrocarbon receptor nuclear transl	98.38
KOG2483	232	consensus Upstream transcription factor 2/L-myc-2	97.98
KOG2588	953	consensus Predicted DNA-binding protein [Transcrip	97.93
PLN03217	93	transcription factor ATBS1; Provisional	97.69
KOG0561	373	consensus bHLH transcription factor [Transcription	97.39
KOG3960	284	consensus Myogenic helix-loop-helix transcription	97.34
KOG4029	228	consensus Transcription factor HAND2/Transcription	97.16
KOG3910	632	consensus Helix loop helix transcription factor [T	95.71
KOG4447	173	consensus Transcription factor TWIST [Transcriptio	94.21
KOG3560	712	consensus Aryl-hydrocarbon receptor [Transcription	90.5
KOG3559	598	consensus Transcriptional regulator SIM1 [Transcri	84.41
KOG3898	254	consensus Transcription factor NeuroD and related	84.04
KOG3558	768	consensus Hypoxia-inducible factor 1/Neuronal PAS	80.06

>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long

Probab=99.39  E-value=3.2e-13  Score=97.46  Aligned_cols=53  Identities=36%  Similarity=0.650  Sum_probs=49.6

Q ss_pred             CCCcchhHHHHHHHHHHHHHHHHcccCCC---CCcChHhHHHHHHHHHHHHHHHHH
Q 022649          139 TDPHSIAERLRRERIAERIRALQELVPSV---NKTDRAAMLDEIVDYVKFLRLQVK  191 (294)
Q Consensus       139 ~~~h~~~ER~RRerIne~~~~L~~LVP~~---~K~DkAsiL~eAI~YIk~Lq~qv~  191 (294)
                      +..|+..||+||++||++|..|+.+||..   .|+||++||+.||+||++|+.+++
T Consensus         5 r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~~   60 (60)
T cd00083           5 REAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELLQ   60 (60)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence            45799999999999999999999999998   789999999999999999998863

A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and

>smart00353 HLH helix loop helix domain

Probab=99.34  E-value=2.6e-12  Score=91.09  Aligned_cols=49  Identities=31%  Similarity=0.542  Sum_probs=45.5

Q ss_pred             chhHHHHHHHHHHHHHHHHcccCC---CCCcChHhHHHHHHHHHHHHHHHHH
Q 022649          143 SIAERLRRERIAERIRALQELVPS---VNKTDRAAMLDEIVDYVKFLRLQVK  191 (294)
Q Consensus       143 ~~~ER~RRerIne~~~~L~~LVP~---~~K~DkAsiL~eAI~YIk~Lq~qv~  191 (294)
                      +..||+||++||++|..|+.+||.   ..|+||++||.+||+||+.|+.+++
T Consensus         1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~   52 (53)
T smart00353        1 NARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ   52 (53)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            467999999999999999999995   5689999999999999999999886

>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt)

Probab=99.33  E-value=1.5e-12  Score=93.65  Aligned_cols=48  Identities=40%  Similarity=0.680  Sum_probs=45.3

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHcccCCC-----CCcChHhHHHHHHHHHHHHH
Q 022649          140 DPHSIAERLRRERIAERIRALQELVPSV-----NKTDRAAMLDEIVDYVKFLR  187 (294)
Q Consensus       140 ~~h~~~ER~RRerIne~~~~L~~LVP~~-----~K~DkAsiL~eAI~YIk~Lq  187 (294)
                      ..|+..||+||++||+.|.+|+++||.+     .|+||++||+.||+||++||
T Consensus         3 ~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq   55 (55)
T PF00010_consen    3 QKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ   55 (55)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence            3599999999999999999999999987     68999999999999999997

; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....

>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]

Probab=99.09  E-value=5e-10  Score=110.28  Aligned_cols=57  Identities=32%  Similarity=0.584  Sum_probs=51.3

Q ss_pred             CCCCCCCcchhHHHHHHHHHHHHHHHHcccCCC----CCcChHhHHHHHHHHHHHHHHHHH
Q 022649          135 RGQATDPHSIAERLRRERIAERIRALQELVPSV----NKTDRAAMLDEIVDYVKFLRLQVK  191 (294)
Q Consensus       135 r~~~~~~h~~~ER~RRerIne~~~~L~~LVP~~----~K~DkAsiL~eAI~YIk~Lq~qv~  191 (294)
                      -.++++.|+.+||+||++||++|++|..|||.|    .|+.|..||..+++||+.||+..+
T Consensus       230 dr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q  290 (411)
T KOG1318|consen  230 DRRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQ  290 (411)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHH
Confidence            334568999999999999999999999999998    377899999999999999998666

>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]

Probab=98.69  E-value=6.5e-09  Score=96.89  Aligned_cols=54  Identities=24%  Similarity=0.432  Sum_probs=47.5

Q ss_pred             CCCcchhHHHHHHHHHHHHHHHHcccCCC--------CCcChHhHHHHHHHHHHHHHHHHHH
Q 022649          139 TDPHSIAERLRRERIAERIRALQELVPSV--------NKTDRAAMLDEIVDYVKFLRLQVKV  192 (294)
Q Consensus       139 ~~~h~~~ER~RRerIne~~~~L~~LVP~~--------~K~DkAsiL~eAI~YIk~Lq~qv~~  192 (294)
                      +..|-++||+||.|||++|.+|+.||+.+        .|++||.||+.||+|+|.||.+.+.
T Consensus        33 k~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~~   94 (250)
T KOG4304|consen   33 KVRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQA   94 (250)
T ss_pred             hhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhccccc
Confidence            34688999999999999999999999964        5788999999999999999876543

>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]

Probab=98.67  E-value=1.8e-08  Score=90.37  Aligned_cols=56  Identities=34%  Similarity=0.550  Sum_probs=49.7

Q ss_pred             CCCcchhHHHHHHHHHHHHHHHHcccCCC-------CCcChHhHHHHHHHHHHHHHHHHHHHc
Q 022649          139 TDPHSIAERLRRERIAERIRALQELVPSV-------NKTDRAAMLDEIVDYVKFLRLQVKVLS  194 (294)
Q Consensus       139 ~~~h~~~ER~RRerIne~~~~L~~LVP~~-------~K~DkAsiL~eAI~YIk~Lq~qv~~L~  194 (294)
                      +..|.-+||+||+.|+..+..|+.|||.|       .|+.||.||..+|+||.+|+.++..-+
T Consensus        63 r~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe  125 (229)
T KOG1319|consen   63 RRAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQE  125 (229)
T ss_pred             HHHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35699999999999999999999999977       388899999999999999988765544

>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]

Probab=98.38  E-value=3.3e-07  Score=96.92  Aligned_cols=51  Identities=29%  Similarity=0.499  Sum_probs=48.1

Q ss_pred             CCCcchhHHHHHHHHHHHHHHHHcccCCC----CCcChHhHHHHHHHHHHHHHHH
Q 022649          139 TDPHSIAERLRRERIAERIRALQELVPSV----NKTDRAAMLDEIVDYVKFLRLQ  189 (294)
Q Consensus       139 ~~~h~~~ER~RRerIne~~~~L~~LVP~~----~K~DkAsiL~eAI~YIk~Lq~q  189 (294)
                      +..|+.+||+||+++|..|.+|.+|||.+    .|+||.+||.+||++||.++++
T Consensus        21 Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~   75 (803)
T KOG3561|consen   21 RENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ   75 (803)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence            57899999999999999999999999987    5999999999999999999875

>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]

Probab=97.98  E-value=1.9e-05  Score=73.18  Aligned_cols=54  Identities=20%  Similarity=0.388  Sum_probs=46.4

Q ss_pred             CCCCcchhHHHHHHHHHHHHHHHHcccCCCC--CcC-hHhHHHHHHHHHHHHHHHHH
Q 022649          138 ATDPHSIAERLRRERIAERIRALQELVPSVN--KTD-RAAMLDEIVDYVKFLRLQVK  191 (294)
Q Consensus       138 ~~~~h~~~ER~RRerIne~~~~L~~LVP~~~--K~D-kAsiL~eAI~YIk~Lq~qv~  191 (294)
                      .+..|+..||+||..|+++|..|+.+||...  |.. +++||+.|+.||+.|+.+..
T Consensus        59 ~R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~  115 (232)
T KOG2483|consen   59 SRAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSA  115 (232)
T ss_pred             chhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHH
Confidence            4668999999999999999999999999872  333 69999999999999987543

>KOG2588 consensus Predicted DNA-binding protein [Transcription]

Probab=97.93  E-value=7.1e-06  Score=87.62  Aligned_cols=61  Identities=28%  Similarity=0.483  Sum_probs=55.3

Q ss_pred             CCCCCcchhHHHHHHHHHHHHHHHHcccCCC-CCcChHhHHHHHHHHHHHHHHHHHHHcccc
Q 022649          137 QATDPHSIAERLRRERIAERIRALQELVPSV-NKTDRAAMLDEIVDYVKFLRLQVKVLSMSR  197 (294)
Q Consensus       137 ~~~~~h~~~ER~RRerIne~~~~L~~LVP~~-~K~DkAsiL~eAI~YIk~Lq~qv~~L~~~~  197 (294)
                      .++..||++||+-|-.|||+|.+|+.+||+. .|+.|..+|..||+||++|+...+.|....
T Consensus       275 ~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq~lk~~~  336 (953)
T KOG2588|consen  275 EKRTAHNIIEKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQKLKLEN  336 (953)
T ss_pred             cccchhhHHHHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhccccccchhh
Confidence            5588999999999999999999999999987 699999999999999999998877776543

>PLN03217 transcription factor ATBS1; Provisional

Probab=97.69  E-value=6e-05  Score=60.05  Aligned_cols=49  Identities=29%  Similarity=0.504  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHHHHcccCCC------CCcChHhHHHHHHHHHHHHHHHHHHHccc
Q 022649          148 LRRERIAERIRALQELVPSV------NKTDRAAMLDEIVDYVKFLRLQVKVLSMS  196 (294)
Q Consensus       148 ~RRerIne~~~~L~~LVP~~------~K~DkAsiL~eAI~YIk~Lq~qv~~L~~~  196 (294)
                      ---+.|+|.+..||+|+|..      .|...+-||+||+.||+.||.+|..|+..
T Consensus        17 isddqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSer   71 (93)
T PLN03217         17 ISEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSER   71 (93)
T ss_pred             CCHHHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33589999999999999974      45677889999999999999999999964

>KOG0561 consensus bHLH transcription factor [Transcription]

Probab=97.39  E-value=9.5e-05  Score=70.86  Aligned_cols=55  Identities=27%  Similarity=0.393  Sum_probs=47.5

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHcccCCC--CCcChHhHHHHHHHHHHHHHHHHHHHc
Q 022649          140 DPHSIAERLRRERIAERIRALQELVPSV--NKTDRAAMLDEIVDYVKFLRLQVKVLS  194 (294)
Q Consensus       140 ~~h~~~ER~RRerIne~~~~L~~LVP~~--~K~DkAsiL~eAI~YIk~Lq~qv~~L~  194 (294)
                      +--+..||+|=.-||..|..||.|+|..  .|+.||.||+.+.+||.+|..+.-+|=
T Consensus        62 eIANsNERRRMQSINAGFqsLr~LlPr~eGEKLSKAAILQQTa~yI~~Le~~Kt~ll  118 (373)
T KOG0561|consen   62 EIANSNERRRMQSINAGFQSLRALLPRKEGEKLSKAAILQQTADYIHQLEGHKTELL  118 (373)
T ss_pred             HhhcchHHHHHHhhhHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHhcccccc
Confidence            3445679999999999999999999975  799999999999999999987655443

>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]

Probab=97.34  E-value=0.00039  Score=65.21  Aligned_cols=58  Identities=14%  Similarity=0.287  Sum_probs=48.3

Q ss_pred             CcchhHHHHHHHHHHHHHHHHc-ccCCC-CCcChHhHHHHHHHHHHHHHHHHHHHccccC
Q 022649          141 PHSIAERLRRERIAERIRALQE-LVPSV-NKTDRAAMLDEIVDYVKFLRLQVKVLSMSRV  198 (294)
Q Consensus       141 ~h~~~ER~RRerIne~~~~L~~-LVP~~-~K~DkAsiL~eAI~YIk~Lq~qv~~L~~~~~  198 (294)
                      .-.+.||+|=.|+||.|.+|++ -.++- .++-|..||..||+||..||.-++++...+-
T Consensus       121 AATMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~~~~  180 (284)
T KOG3960|consen  121 AATMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQDQAEK  180 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhhccch
Confidence            3456799999999999999985 34444 5799999999999999999999999886443

>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]

Probab=97.16  E-value=0.00067  Score=62.03  Aligned_cols=59  Identities=17%  Similarity=0.316  Sum_probs=50.6

Q ss_pred             CCCcchhHHHHHHHHHHHHHHHHcccCCC----CCcChHhHHHHHHHHHHHHHHHHHHHcccc
Q 022649          139 TDPHSIAERLRRERIAERIRALQELVPSV----NKTDRAAMLDEIVDYVKFLRLQVKVLSMSR  197 (294)
Q Consensus       139 ~~~h~~~ER~RRerIne~~~~L~~LVP~~----~K~DkAsiL~eAI~YIk~Lq~qv~~L~~~~  197 (294)
                      +..++..||.|=+.+|..|..||.+||..    .|+.|..+|-.||.||++|+..++.-+..+
T Consensus       110 ~~~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~~~  172 (228)
T KOG4029|consen  110 RQARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEAPL  172 (228)
T ss_pred             hhhhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhcccccCC
Confidence            34567779999999999999999999854    579999999999999999998887766543

>KOG3910 consensus Helix loop helix transcription factor [Transcription]

Probab=95.71  E-value=0.074  Score=54.41  Aligned_cols=56  Identities=23%  Similarity=0.276  Sum_probs=45.4

Q ss_pred             CCCcchhHHHHHHHHHHHHHHHHcccCCCCCc----ChHhHHHHHHHHHHHHHHHHHHHc
Q 022649          139 TDPHSIAERLRRERIAERIRALQELVPSVNKT----DRAAMLDEIVDYVKFLRLQVKVLS  194 (294)
Q Consensus       139 ~~~h~~~ER~RRerIne~~~~L~~LVP~~~K~----DkAsiL~eAI~YIk~Lq~qv~~L~  194 (294)
                      +...+..||.|=+-|||.|++|.++.----|.    .|.-||..||.-|-.|++||.+--
T Consensus       527 R~aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRERN  586 (632)
T KOG3910|consen  527 RMANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRERN  586 (632)
T ss_pred             HhhhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHHcc
Confidence            34567778888889999999999887544343    478899999999999999998744

>KOG4447 consensus Transcription factor TWIST [Transcription]

Probab=94.21  E-value=0.021  Score=50.22  Aligned_cols=53  Identities=23%  Similarity=0.434  Sum_probs=46.9

Q ss_pred             CCCcchhHHHHHHHHHHHHHHHHcccCCC--CCcChHhHHHHHHHHHHHHHHHHH
Q 022649          139 TDPHSIAERLRRERIAERIRALQELVPSV--NKTDRAAMLDEIVDYVKFLRLQVK  191 (294)
Q Consensus       139 ~~~h~~~ER~RRerIne~~~~L~~LVP~~--~K~DkAsiL~eAI~YIk~Lq~qv~  191 (294)
                      +--|++-||+|-..+|+.|..||.++|..  .|..|.--|.-|..||-||-.-.+
T Consensus        79 rv~anvrerqRtqsLn~AF~~lr~iiptlPsdklSkiqtLklA~ryidfl~~vl~  133 (173)
T KOG4447|consen   79 RVMANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQVLQ  133 (173)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHhhcCCCCccccccccchhhcccCCchhhhccc
Confidence            34699999999999999999999999965  789999999999999999975443

>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]

Probab=90.50  E-value=0.32  Score=50.51  Aligned_cols=40  Identities=25%  Similarity=0.485  Sum_probs=35.8

Q ss_pred             hHHHHHHHHHHHHHHHHcccCCC----CCcChHhHHHHHHHHHH
Q 022649          145 AERLRRERIAERIRALQELVPSV----NKTDRAAMLDEIVDYVK  184 (294)
Q Consensus       145 ~ER~RRerIne~~~~L~~LVP~~----~K~DkAsiL~eAI~YIk  184 (294)
                      --|+-|+|+|..+..|..|+|--    .|+||.|||.-+|.|++
T Consensus        32 PSKRHRdRLNaELD~lAsLLPfpqdiisKLDkLSVLRLSVSyLr   75 (712)
T KOG3560|consen   32 PSKRHRDRLNAELDHLASLLPFPQDIISKLDKLSVLRLSVSYLR   75 (712)
T ss_pred             cchhHHHHhhhHHHHHHHhcCCCHHHHhhhhhhhhhhhhHHHHH
Confidence            35677999999999999999953    79999999999999986

>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]

Probab=84.41  E-value=1.1  Score=45.25  Aligned_cols=42  Identities=29%  Similarity=0.462  Sum_probs=37.9

Q ss_pred             hHHHHHHHHHHHHHHHHcccCCC----CCcChHhHHHHHHHHHHHH
Q 022649          145 AERLRRERIAERIRALQELVPSV----NKTDRAAMLDEIVDYVKFL  186 (294)
Q Consensus       145 ~ER~RRerIne~~~~L~~LVP~~----~K~DkAsiL~eAI~YIk~L  186 (294)
                      +.|.||++-|-.|.+|..|+|-.    ...||++|+.-|..|||.-
T Consensus         8 aA~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKmr   53 (598)
T KOG3559|consen    8 AARTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKMR   53 (598)
T ss_pred             HHHHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHHH
Confidence            57899999999999999999964    5699999999999999864

>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]

Probab=84.04  E-value=1.3  Score=41.60  Aligned_cols=47  Identities=23%  Similarity=0.362  Sum_probs=40.6

Q ss_pred             cchhHHHHHHHHHHHHHHHHcccCCC---CCcChHhHHHHHHHHHHHHHH
Q 022649          142 HSIAERLRRERIAERIRALQELVPSV---NKTDRAAMLDEIVDYVKFLRL  188 (294)
Q Consensus       142 h~~~ER~RRerIne~~~~L~~LVP~~---~K~DkAsiL~eAI~YIk~Lq~  188 (294)
                      =+..||.|--.+|+-|..||++||.+   .|+.|...|.-|-.||..|++
T Consensus        76 aNaRER~RMH~LNdAld~LReviP~~~~~~klskIetl~~a~~yi~als~  125 (254)
T KOG3898|consen   76 ANARERTRMHDLNDALDALREVIPHGLHPPKLSKIETLRLAANYIAALSE  125 (254)
T ss_pred             ccchhhccccchhHHHHHhHhhccCcCCCCCCCcchhHHhhhcchhhhcc
Confidence            35568888899999999999999954   688999999999999998874

>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]

Probab=80.06  E-value=1.2  Score=47.35  Aligned_cols=41  Identities=27%  Similarity=0.510  Sum_probs=36.7

Q ss_pred             hHHHHHHHHHHHHHHHHcccCCC----CCcChHhHHHHHHHHHHH
Q 022649          145 AERLRRERIAERIRALQELVPSV----NKTDRAAMLDEIVDYVKF  185 (294)
Q Consensus       145 ~ER~RRerIne~~~~L~~LVP~~----~K~DkAsiL~eAI~YIk~  185 (294)
                      +.|.||-|-|+-|-+|..++|--    ..+|||+|+.-||-|+|.
T Consensus        53 AARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLRl   97 (768)
T KOG3558|consen   53 AARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLRL   97 (768)
T ss_pred             hhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHHH
Confidence            57999999999999999999942    469999999999999974

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	294
1am9_A	82	Srebp-1A, protein (sterol regulatory element bindi	5e-15
1an4_A	65	Protein (upstream stimulatory factor); protein-DNA	9e-10
1hlo_A	80	Protein (transcription factor MAX); transcriptiona	1e-08
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	2e-08
1nkp_A	88	C-MYC, MYC proto-oncogene protein; transcription,	3e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
1nlw_A	80	MAD protein, MAX dimerizer; transcription factor,	8e-04

>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C Length = 82

 Score = 68.2 bits (167), Expect = 5e-15
 Identities = 18/63 (28%), Positives = 35/63 (55%), Gaps = 1/63 (1%)

Query: 134 RRGQATDPHSIAERLRRERIAERIRALQELVPSVN-KTDRAAMLDEIVDYVKFLRLQVKV 192
            RG+    H+  E+  R  I ++I  L++LV     K +++A+L + +DY++FL+   + 
Sbjct: 2   SRGEKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQK 61

Query: 193 LSM 195
           L  
Sbjct: 62  LKQ 64

>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1 Length = 65

 Score = 52.7 bits (127), Expect = 9e-10
 Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 10/66 (15%)

Query: 132 RARRGQATDPHSIAERLRRERIAERIRALQELVPSVN------KTDRAAMLDEIVDYVKF 185
             RR      H+  ER RR++I   I  L +++P  +         +  +L +  DY++ 
Sbjct: 3   EKRR----AQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQE 58

Query: 186 LRLQVK 191
           LR    
Sbjct: 59  LRQSNH 64

>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1 Length = 80

 Score = 50.0 bits (120), Expect = 1e-08
 Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 6/68 (8%)

Query: 128 RPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVN--KTDRAAMLDEIVDYVKF 185
                 +R      H+  ER RR+ I +   +L++ VPS+   K  RA +LD+  +Y+++
Sbjct: 6   VESDADKR----AHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQY 61

Query: 186 LRLQVKVL 193
           +R +    
Sbjct: 62  MRRKNHTH 69

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B Length = 83

 Score = 49.7 bits (119), Expect = 2e-08
 Identities = 17/54 (31%), Positives = 32/54 (59%), Gaps = 2/54 (3%)

Query: 142 HSIAERLRRERIAERIRALQELVPSVN--KTDRAAMLDEIVDYVKFLRLQVKVL 193
           H+  ER RR+ I +   +L++ VPS+   K  RA +LD+  +Y++++R +    
Sbjct: 6   HNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTH 59

>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 Length = 88

 Score = 46.6 bits (111), Expect = 3e-07
 Identities = 12/55 (21%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 142 HSIAERLRRERIAERIRALQELVPSVN---KTDRAAMLDEIVDYVKFLRLQVKVL 193
           H++ ER RR  +     AL++ +P +    K  +  +L +   Y+  ++ + + L
Sbjct: 10  HNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKL 64

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.2 bits (119), Expect = 4e-07
 Identities = 26/142 (18%), Positives = 48/142 (33%), Gaps = 23/142 (16%)

Query: 142 HSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMS-RVGA 200
           HS   +LR   I   +R L +  P  N      +L  ++  V+  +      ++S ++  
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYEN-----CLL--VLLNVQNAKA-WNAFNLSCKI-- 268

Query: 201 PGAVAPLVTT-DLPLSSVEDESGEGVRNQPAWEKWSNDGTERQVAKLMEENVGAAMQFLQ 259
                 L+TT       V D          + +  S   T  +V  L+ + +    Q L 
Sbjct: 269 ------LLTTRF---KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP 319

Query: 260 SKALCIMP--ISLATAIYHSQP 279
            + L   P  +S+         
Sbjct: 320 REVLTTNPRRLSIIAESIRDGL 341

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 1e-04
 Identities = 41/213 (19%), Positives = 67/213 (31%), Gaps = 64/213 (30%)

Query: 88  KPEEASGSGKRFPEEHAIKNV-FHGQPLPSPVPAAPHPPAMRPR--VRARRGQATDPHSI 144
           K EE     ++F EE    N  F    L SP+      P+M  R  +  R     D    
Sbjct: 74  KQEEMV---QKFVEEVLRINYKF----LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126

Query: 145 AER-LRRERIAERIR-ALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRVGAPG 202
           A+  + R +   ++R AL EL P+ N          ++                  G  G
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRPAKN----------VLID----------------GVLG 160

Query: 203 A----VAPLVTTDLPLSSVEDESGEGVRNQPAWEKWSNDGTERQVAKLMEENVGAAMQFL 258
           +    VA  V        V+ +    +     W    N  +   V           ++ L
Sbjct: 161 SGKTWVALDVCLS---YKVQCKMDFKI----FWLNLKNCNSPETV-----------LEML 202

Query: 259 QSKALC--IMPISLATAIYHSQPPESPNLVKPE 289
           Q   L   I P   + + + S      + ++ E
Sbjct: 203 QK--LLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233

>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1 Length = 80

 Score = 36.7 bits (85), Expect = 8e-04
 Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 3/55 (5%)

Query: 142 HSIAERLRRERIAERIRALQELVPSVNKTDRAA---MLDEIVDYVKFLRLQVKVL 193
           H+  E+ RR  +   +  L+ LVP    + R     +L +   ++K L    +  
Sbjct: 5   HNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKA 59

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	294
4ati_A	118	MITF, microphthalmia-associated transcription fact	99.59
1am9_A	82	Srebp-1A, protein (sterol regulatory element bindi	99.57
1a0a_A	63	BHLH, protein (phosphate system positive regulator	99.54
4h10_B	71	Circadian locomoter output cycles protein kaput; B	99.53
1an4_A	65	Protein (upstream stimulatory factor); protein-DNA	99.52
4h10_A	73	ARYL hydrocarbon receptor nuclear translocator-LI	99.47
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	99.41
1hlo_A	80	Protein (transcription factor MAX); transcriptiona	99.41
1nkp_A	88	C-MYC, MYC proto-oncogene protein; transcription,	99.36
3u5v_A	76	Protein MAX, transcription factor E2-alpha chimer;	99.35
1nlw_A	80	MAD protein, MAX dimerizer; transcription factor,	99.23
1mdy_A	68	Protein (MYOD BHLH domain); protein-DNA complex, t	99.01
4f3l_A	361	Mclock, circadian locomoter output cycles protein	98.99
2ql2_B	60	Neurod1, neurogenic differentiation factor 1; basi	98.94
4f3l_B	387	BMAL1B; BHLH, PAS, circadian rhythm proteins, tran	98.81
4ath_A	83	MITF, microphthalmia-associated transcription fact	98.57
2lfh_A	68	DNA-binding protein inhibitor ID-3; structural gen	98.55
4aya_A	97	DNA-binding protein inhibitor ID-2; cell cycle; 2.	98.0

>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A

Probab=99.59  E-value=1.4e-15  Score=125.43  Aligned_cols=67  Identities=31%  Similarity=0.488  Sum_probs=51.7

Q ss_pred             cccccCCCCCCCcchhHHHHHHHHHHHHHHHHcccCCCC----CcChHhHHHHHHHHHHHHHHHHHHHccc
Q 022649          130 RVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVN----KTDRAAMLDEIVDYVKFLRLQVKVLSMS  196 (294)
Q Consensus       130 ~~r~~r~~~~~~h~~~ER~RRerIne~~~~L~~LVP~~~----K~DkAsiL~eAI~YIk~Lq~qv~~L~~~  196 (294)
                      +...++...+.+|+.+||+||++||++|.+|+.|||++.    |++|++||.+||+||++||.+++.|+..
T Consensus        19 ~~~~k~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~   89 (118)
T 4ati_A           19 RALAKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDL   89 (118)
T ss_dssp             ------------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555567789999999999999999999999999873    7889999999999999999999999853

>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C

Probab=99.57  E-value=2e-15  Score=117.14  Aligned_cols=57  Identities=28%  Similarity=0.505  Sum_probs=54.5

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHcccCCC-CCcChHhHHHHHHHHHHHHHHHHHHHccc
Q 022649          140 DPHSIAERLRRERIAERIRALQELVPSV-NKTDRAAMLDEIVDYVKFLRLQVKVLSMS  196 (294)
Q Consensus       140 ~~h~~~ER~RRerIne~~~~L~~LVP~~-~K~DkAsiL~eAI~YIk~Lq~qv~~L~~~  196 (294)
                      ..|+.+||+||++||++|.+|+.|||++ .|+||++||.+||+||++||.+++.|+..
T Consensus         8 ~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e   65 (82)
T 1am9_A            8 TAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQE   65 (82)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5799999999999999999999999998 89999999999999999999999999864

>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1

Probab=99.54  E-value=9.9e-16  Score=113.65  Aligned_cols=53  Identities=25%  Similarity=0.475  Sum_probs=48.2

Q ss_pred             CCCcchhHHHHHHHHHHHHHHHHcccCCC-------CCcChHhHHHHHHHHHHHHHHHHH
Q 022649          139 TDPHSIAERLRRERIAERIRALQELVPSV-------NKTDRAAMLDEIVDYVKFLRLQVK  191 (294)
Q Consensus       139 ~~~h~~~ER~RRerIne~~~~L~~LVP~~-------~K~DkAsiL~eAI~YIk~Lq~qv~  191 (294)
                      +.+|+++||+||++||++|..|+.|||.+       .|.+||+||+.||+||++||++|+
T Consensus         3 r~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~~   62 (63)
T 1a0a_A            3 RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS   62 (63)
T ss_dssp             TTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHhh
Confidence            46899999999999999999999999965       466799999999999999998763

>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}

Probab=99.53  E-value=1.1e-14  Score=110.73  Aligned_cols=57  Identities=19%  Similarity=0.355  Sum_probs=53.0

Q ss_pred             CCCcchhHHHHHHHHHHHHHHHHcccCCC-CCcChHhHHHHHHHHHHHHHHHHHHHcc
Q 022649          139 TDPHSIAERLRRERIAERIRALQELVPSV-NKTDRAAMLDEIVDYVKFLRLQVKVLSM  195 (294)
Q Consensus       139 ~~~h~~~ER~RRerIne~~~~L~~LVP~~-~K~DkAsiL~eAI~YIk~Lq~qv~~L~~  195 (294)
                      +.+|+.+||+||++||++|.+|+.|||.. .|+||++||+.||+||++||.++.-|+-
T Consensus         9 R~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~~   66 (71)
T 4h10_B            9 RVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLEH   66 (71)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             hhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHHh
Confidence            35799999999999999999999999975 6999999999999999999999988874

>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1

Probab=99.52  E-value=2.6e-15  Score=111.12  Aligned_cols=53  Identities=26%  Similarity=0.478  Sum_probs=49.3

Q ss_pred             CCCCcchhHHHHHHHHHHHHHHHHcccCCCC------CcChHhHHHHHHHHHHHHHHHH
Q 022649          138 ATDPHSIAERLRRERIAERIRALQELVPSVN------KTDRAAMLDEIVDYVKFLRLQV  190 (294)
Q Consensus       138 ~~~~h~~~ER~RRerIne~~~~L~~LVP~~~------K~DkAsiL~eAI~YIk~Lq~qv  190 (294)
                      .+..|+.+||+||++||++|.+|+.|||.+.      |+||++||.+||+||++||.++
T Consensus         5 rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~   63 (65)
T 1an4_A            5 RRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN   63 (65)
T ss_dssp             CCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred             HHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence            4578999999999999999999999999875      7899999999999999999865

>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}

Probab=99.47  E-value=3.9e-15  Score=113.56  Aligned_cols=49  Identities=35%  Similarity=0.514  Sum_probs=46.3

Q ss_pred             CCCcchhHHHHHHHHHHHHHHHHcccCCC----CCcChHhHHHHHHHHHHHHH
Q 022649          139 TDPHSIAERLRRERIAERIRALQELVPSV----NKTDRAAMLDEIVDYVKFLR  187 (294)
Q Consensus       139 ~~~h~~~ER~RRerIne~~~~L~~LVP~~----~K~DkAsiL~eAI~YIk~Lq  187 (294)
                      +..|+.+||+||++||++|.+|+.|||.+    .|+|||+||+.||+|||.|+
T Consensus        10 R~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~   62 (73)
T 4h10_A           10 REAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLR   62 (73)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHS
T ss_pred             HHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHh
Confidence            46799999999999999999999999976    69999999999999999996

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B

Probab=99.41  E-value=2.1e-13  Score=105.40  Aligned_cols=57  Identities=30%  Similarity=0.581  Sum_probs=53.3

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHcccCCC--CCcChHhHHHHHHHHHHHHHHHHHHHccc
Q 022649          140 DPHSIAERLRRERIAERIRALQELVPSV--NKTDRAAMLDEIVDYVKFLRLQVKVLSMS  196 (294)
Q Consensus       140 ~~h~~~ER~RRerIne~~~~L~~LVP~~--~K~DkAsiL~eAI~YIk~Lq~qv~~L~~~  196 (294)
                      ..|+..||+||++||+.|..|+.+||.+  .|++|++||..||+||++|+.+++.|+..
T Consensus         4 ~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e   62 (83)
T 1nkp_B            4 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQD   62 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4699999999999999999999999975  79999999999999999999999998853

>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1

Probab=99.41  E-value=2e-13  Score=105.06  Aligned_cols=58  Identities=29%  Similarity=0.570  Sum_probs=54.3

Q ss_pred             CCCcchhHHHHHHHHHHHHHHHHcccCCC--CCcChHhHHHHHHHHHHHHHHHHHHHccc
Q 022649          139 TDPHSIAERLRRERIAERIRALQELVPSV--NKTDRAAMLDEIVDYVKFLRLQVKVLSMS  196 (294)
Q Consensus       139 ~~~h~~~ER~RRerIne~~~~L~~LVP~~--~K~DkAsiL~eAI~YIk~Lq~qv~~L~~~  196 (294)
                      +..|+..||+||.+||++|..|+.+||.+  .|++|++||..||+||++|+.+++.|+..
T Consensus        13 R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e   72 (80)
T 1hlo_A           13 RAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQD   72 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35799999999999999999999999986  69999999999999999999999999864

>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1

Probab=99.36  E-value=5.4e-13  Score=104.80  Aligned_cols=56  Identities=21%  Similarity=0.421  Sum_probs=52.5

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHcccCCC---CCcChHhHHHHHHHHHHHHHHHHHHHcc
Q 022649          140 DPHSIAERLRRERIAERIRALQELVPSV---NKTDRAAMLDEIVDYVKFLRLQVKVLSM  195 (294)
Q Consensus       140 ~~h~~~ER~RRerIne~~~~L~~LVP~~---~K~DkAsiL~eAI~YIk~Lq~qv~~L~~  195 (294)
                      ..|+..||+||+.||++|..|+.+||..   .|++|++||..||+||++|+.+.+.|..
T Consensus         8 ~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~   66 (88)
T 1nkp_A            8 RTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLIS   66 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4699999999999999999999999975   5999999999999999999999998875

>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*

Probab=99.35  E-value=5.8e-13  Score=102.22  Aligned_cols=57  Identities=26%  Similarity=0.351  Sum_probs=50.1

Q ss_pred             CCCcchhHHHHHHHHHHHHHHHHcccCC---CCCc-ChHhHHHHHHHHHHHHHHHHHHHcc
Q 022649          139 TDPHSIAERLRRERIAERIRALQELVPS---VNKT-DRAAMLDEIVDYVKFLRLQVKVLSM  195 (294)
Q Consensus       139 ~~~h~~~ER~RRerIne~~~~L~~LVP~---~~K~-DkAsiL~eAI~YIk~Lq~qv~~L~~  195 (294)
                      +..|+..||+||+.||++|.+|+.+||.   ..|. .|..||..||+||++|++++++++.
T Consensus         6 R~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~~   66 (76)
T 3u5v_A            6 RAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERNL   66 (76)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             HhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4679999999999999999999999995   3555 7899999999999999999999986

>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1

Probab=99.23  E-value=1.2e-11  Score=95.73  Aligned_cols=57  Identities=19%  Similarity=0.203  Sum_probs=52.6

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHcccCCC---CCcChHhHHHHHHHHHHHHHHHHHHHccc
Q 022649          140 DPHSIAERLRRERIAERIRALQELVPSV---NKTDRAAMLDEIVDYVKFLRLQVKVLSMS  196 (294)
Q Consensus       140 ~~h~~~ER~RRerIne~~~~L~~LVP~~---~K~DkAsiL~eAI~YIk~Lq~qv~~L~~~  196 (294)
                      ..|+..||+||..|+++|..|+.+||..   .|++|++||..|++||+.|+.+.+.|...
T Consensus         3 ~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e   62 (80)
T 1nlw_A            3 STHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQ   62 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3699999999999999999999999965   68899999999999999999999988864

>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*

Probab=99.01  E-value=6.2e-11  Score=89.17  Aligned_cols=52  Identities=17%  Similarity=0.331  Sum_probs=47.8

Q ss_pred             CCCcchhHHHHHHHHHHHHHHHHcccCCC--CCcChHhHHHHHHHHHHHHHHHH
Q 022649          139 TDPHSIAERLRRERIAERIRALQELVPSV--NKTDRAAMLDEIVDYVKFLRLQV  190 (294)
Q Consensus       139 ~~~h~~~ER~RRerIne~~~~L~~LVP~~--~K~DkAsiL~eAI~YIk~Lq~qv  190 (294)
                      +..|+..||+|+..||+.|..|+.+||..  .|++|..||..||+||.+|++.+
T Consensus        13 R~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L   66 (68)
T 1mdy_A           13 RKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALL   66 (68)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred             hhHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            45699999999999999999999999965  68999999999999999999765

>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}

Probab=98.99  E-value=3.6e-10  Score=106.44  Aligned_cols=53  Identities=19%  Similarity=0.409  Sum_probs=43.1

Q ss_pred             CCCCcchhHHHHHHHHHHHHHHHHcccC-CCCCcChHhHHHHHHHHHHHHHHHH
Q 022649          138 ATDPHSIAERLRRERIAERIRALQELVP-SVNKTDRAAMLDEIVDYVKFLRLQV  190 (294)
Q Consensus       138 ~~~~h~~~ER~RRerIne~~~~L~~LVP-~~~K~DkAsiL~eAI~YIk~Lq~qv  190 (294)
                      .+.+|+.+||+||++||+.|.+|+.||| ...|+||++||..||+|||.|+..-
T Consensus        12 ~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~~   65 (361)
T 4f3l_A           12 KRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKETT   65 (361)
T ss_dssp             -------CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhhc
Confidence            4568999999999999999999999999 5579999999999999999998654

>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}

Probab=98.94  E-value=9.2e-10  Score=80.79  Aligned_cols=51  Identities=20%  Similarity=0.277  Sum_probs=46.8

Q ss_pred             CcchhHHHHHHHHHHHHHHHHcccCCC---CCcChHhHHHHHHHHHHHHHHHHH
Q 022649          141 PHSIAERLRRERIAERIRALQELVPSV---NKTDRAAMLDEIVDYVKFLRLQVK  191 (294)
Q Consensus       141 ~h~~~ER~RRerIne~~~~L~~LVP~~---~K~DkAsiL~eAI~YIk~Lq~qv~  191 (294)
                      .|+..||+|+..||+.|..|+.+||..   .|++|..+|..||+||++|++.++
T Consensus         5 ~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~   58 (60)
T 2ql2_B            5 KANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR   58 (60)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence            478899999999999999999999975   589999999999999999998763

>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}

Probab=98.81  E-value=1e-09  Score=104.62  Aligned_cols=51  Identities=33%  Similarity=0.439  Sum_probs=47.1

Q ss_pred             CCCcchhHHHHHHHHHHHHHHHHcccC----CCCCcChHhHHHHHHHHHHHHHHH
Q 022649          139 TDPHSIAERLRRERIAERIRALQELVP----SVNKTDRAAMLDEIVDYVKFLRLQ  189 (294)
Q Consensus       139 ~~~h~~~ER~RRerIne~~~~L~~LVP----~~~K~DkAsiL~eAI~YIk~Lq~q  189 (294)
                      +.+|+.+||+||+|||+.|.+|+.|||    ...|+||++||..||.|||.|+..
T Consensus        14 ~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~~   68 (387)
T 4f3l_B           14 REAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGA   68 (387)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHCC
T ss_pred             cccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhcc
Confidence            468999999999999999999999999    458999999999999999999843

>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}

Probab=98.57  E-value=7.8e-08  Score=74.91  Aligned_cols=46  Identities=26%  Similarity=0.444  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHHcccCCC----CCcChHhHHHHHHHHHHHHHHHHHHHcc
Q 022649          150 RERIAERIRALQELVPSV----NKTDRAAMLDEIVDYVKFLRLQVKVLSM  195 (294)
Q Consensus       150 RerIne~~~~L~~LVP~~----~K~DkAsiL~eAI~YIk~Lq~qv~~L~~  195 (294)
                      |..||++|.+|..|||.+    .|.+|++||..||+||++||..++.+..
T Consensus         4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e   53 (83)
T 4ath_A            4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKD   53 (83)
T ss_dssp             HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred             hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            889999999999999975    4799999999999999999998887764

>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=98.55  E-value=3.9e-08  Score=73.96  Aligned_cols=45  Identities=22%  Similarity=0.375  Sum_probs=41.1

Q ss_pred             hhHHHHHHHHHHHHHHHHcccCCC---CCcChHhHHHHHHHHHHHHHH
Q 022649          144 IAERLRRERIAERIRALQELVPSV---NKTDRAAMLDEIVDYVKFLRL  188 (294)
Q Consensus       144 ~~ER~RRerIne~~~~L~~LVP~~---~K~DkAsiL~eAI~YIk~Lq~  188 (294)
                      ..||+|...||+.|..||++||..   .|++|..+|..||+||+.||.
T Consensus        20 erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~   67 (68)
T 2lfh_A           20 EEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV   67 (68)
T ss_dssp             CCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence            448889999999999999999976   689999999999999999984

>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}

Probab=98.00  E-value=1.2e-05  Score=64.29  Aligned_cols=49  Identities=22%  Similarity=0.373  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHHHHHHcccCCC---CCcChHhHHHHHHHHHHHHHHHHHHHc
Q 022649          146 ERLRRERIAERIRALQELVPSV---NKTDRAAMLDEIVDYVKFLRLQVKVLS  194 (294)
Q Consensus       146 ER~RRerIne~~~~L~~LVP~~---~K~DkAsiL~eAI~YIk~Lq~qv~~L~  194 (294)
                      ||.|=..||+.|..||.+||..   .|+.|..+|..||+||++|+..++.-.
T Consensus        33 ~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~~~   84 (97)
T 4aya_A           33 PMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDSHL   84 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence            5677788999999999999965   589999999999999999998876544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	294
d1uklc_	61	a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId	2e-13
d1am9a_	80	a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxI	3e-13
d1nkpb_	83	a.38.1.1 (B:) Max protein {Human (Homo sapiens) [T	1e-12
d1nkpa_	88	a.38.1.1 (A:) Myc proto-oncogene protein {Human (H	3e-12
d1a0aa_	63	a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Sa	4e-12
d1mdya_	68	a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus muscul	5e-11
d1nlwa_	79	a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [T	2e-10
d1an4a_	65	a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapien	2e-10

>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 61

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.7 bits (150), Expect = 2e-13
 Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 150 RERIAERIRALQELVPSVN-KTDRAAMLDEIVDYVKFLRLQVKVLSM 195
           R  I ++I  L++LV   + K  ++ +L + +DY+K+L+     L  
Sbjct: 1   RSSINDKIIELKDLVMGTDAKMHKSGVLRKAIDYIKYLQQVNHKLRQ 47

>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.9 bits (150), Expect = 3e-13
 Identities = 18/61 (29%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 134 RRGQATDPHSIAERLRRERIAERIRALQELVPSVN-KTDRAAMLDEIVDYVKFLRLQVKV 192
            RG+    H+  E+  R  I ++I  L++LV     K +++A+L + +DY++FL+   + 
Sbjct: 2   SRGEKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQK 61

Query: 193 L 193
           L
Sbjct: 62  L 62

>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]} Length = 83

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Max protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.3 bits (146), Expect = 1e-12
 Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 2/56 (3%)

Query: 142 HSIAERLRRERIAERIRALQELVPSVN--KTDRAAMLDEIVDYVKFLRLQVKVLSM 195
           H+  ER RR+ I +   +L++ VPS+   K  RA +LD+  +Y++++R +      
Sbjct: 6   HNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQ 61

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.5 bits (144), Expect = 3e-12
 Identities = 13/71 (18%), Positives = 30/71 (42%), Gaps = 7/71 (9%)

Query: 130 RVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVN---KTDRAAMLDEIVDYVKFL 186
            +  +R      H++ ER RR  +     AL++ +P +    K  +  +L +   Y+  +
Sbjct: 2   HMNVKR----RTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSV 57

Query: 187 RLQVKVLSMSR 197
           + + + L    
Sbjct: 58  QAEEQKLISEE 68

>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 63

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Pho4 B/HLH domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.0 bits (140), Expect = 4e-12
 Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 7/57 (12%)

Query: 142 HSIAERLRRERIAERIRALQELVP-------SVNKTDRAAMLDEIVDYVKFLRLQVK 191
           H  AE+ RR R+A  +  L  L+P             +A  ++    Y++ L+    
Sbjct: 6   HKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS 62

>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 68

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myod B/HLH domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.3 bits (133), Expect = 5e-11
 Identities = 10/67 (14%), Positives = 26/67 (38%), Gaps = 2/67 (2%)

Query: 127 MRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVN--KTDRAAMLDEIVDYVK 184
           M  + +          ++ ER R  ++ E    L+    S    +  +  +L   + Y++
Sbjct: 1   MELKRKTTNADRRKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIE 60

Query: 185 FLRLQVK 191
            L+  ++
Sbjct: 61  GLQALLR 67

>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Mad protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.1 bits (130), Expect = 2e-10
 Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 3/59 (5%)

Query: 142 HSIAERLRRERIAERIRALQELVPSVN---KTDRAAMLDEIVDYVKFLRLQVKVLSMSR 197
           H+  E+ RR  +   +  L+ LVP      +    ++L +   ++K L    +      
Sbjct: 5   HNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQI 63

>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Usf B/HLH domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.6 bits (129), Expect = 2e-10
 Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 6/56 (10%)

Query: 142 HSIAERLRRERIAERIRALQELVPSVN------KTDRAAMLDEIVDYVKFLRLQVK 191
           H+  ER RR++I   I  L +++P  +         +  +L +  DY++ LR    
Sbjct: 9   HNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH 64

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	294
d1a0aa_	63	Pho4 B/HLH domain {Baker's yeast (Saccharomyces ce	99.51
d1mdya_	68	Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10	99.49
d1am9a_	80	SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}	99.47
d1nlwa_	79	Mad protein {Human (Homo sapiens) [TaxId: 9606]}	99.42
d1nkpb_	83	Max protein {Human (Homo sapiens) [TaxId: 9606]}	99.38
d1nkpa_	88	Myc proto-oncogene protein {Human (Homo sapiens) [	99.37
d1an4a_	65	Usf B/HLH domain {Human (Homo sapiens) [TaxId: 960	99.37
d1uklc_	61	SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}	99.34

>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Pho4 B/HLH domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.51  E-value=4.7e-15  Score=107.75  Aligned_cols=52  Identities=25%  Similarity=0.489  Sum_probs=48.0

Q ss_pred             CCCcchhHHHHHHHHHHHHHHHHcccCC-------CCCcChHhHHHHHHHHHHHHHHHH
Q 022649          139 TDPHSIAERLRRERIAERIRALQELVPS-------VNKTDRAAMLDEIVDYVKFLRLQV  190 (294)
Q Consensus       139 ~~~h~~~ER~RRerIne~~~~L~~LVP~-------~~K~DkAsiL~eAI~YIk~Lq~qv  190 (294)
                      +..|+.+||+||++||++|..|+.|||.       ..|+||++||+.||+||++||++|
T Consensus         3 R~~H~~~Er~RR~~in~~~~~L~~llP~~~~~~~~~~k~sKa~iL~~Av~yI~~Lq~~v   61 (63)
T d1a0aa_           3 RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG   61 (63)
T ss_dssp             TTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHCCCcccccCCcccccHHHHHHHHHHHHHHHHHhh
Confidence            4579999999999999999999999995       368999999999999999999875

>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myod B/HLH domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.49  E-value=1.6e-15  Score=112.10  Aligned_cols=53  Identities=17%  Similarity=0.342  Sum_probs=49.0

Q ss_pred             CCCcchhHHHHHHHHHHHHHHHHcccCCC--CCcChHhHHHHHHHHHHHHHHHHH
Q 022649          139 TDPHSIAERLRRERIAERIRALQELVPSV--NKTDRAAMLDEIVDYVKFLRLQVK  191 (294)
Q Consensus       139 ~~~h~~~ER~RRerIne~~~~L~~LVP~~--~K~DkAsiL~eAI~YIk~Lq~qv~  191 (294)
                      +..|+..||+||++||++|..|+.|||.+  .|+||++||..||+||++||++|+
T Consensus        13 R~~hn~~Er~Rr~~in~~~~~L~~llP~~~~~k~sK~~iL~~Ai~YI~~Lq~~l~   67 (68)
T d1mdya_          13 RKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLR   67 (68)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence            35699999999999999999999999986  589999999999999999998764

>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=2.3e-14  Score=108.46  Aligned_cols=57  Identities=28%  Similarity=0.505  Sum_probs=53.6

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHcccCCC-CCcChHhHHHHHHHHHHHHHHHHHHHccc
Q 022649          140 DPHSIAERLRRERIAERIRALQELVPSV-NKTDRAAMLDEIVDYVKFLRLQVKVLSMS  196 (294)
Q Consensus       140 ~~h~~~ER~RRerIne~~~~L~~LVP~~-~K~DkAsiL~eAI~YIk~Lq~qv~~L~~~  196 (294)
                      ..|+.+||+||++||+.|..|+.|||++ .|+||++||..||+||++|+.+++.|...
T Consensus         8 ~~H~~~Er~RR~~in~~~~~L~~llP~~~~k~~K~~iL~~a~~yI~~L~~~~~~L~~e   65 (80)
T d1am9a_           8 TAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQE   65 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4699999999999999999999999986 68999999999999999999999999864

>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Mad protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=9e-14  Score=104.59  Aligned_cols=57  Identities=19%  Similarity=0.203  Sum_probs=52.9

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHcccCCC---CCcChHhHHHHHHHHHHHHHHHHHHHccc
Q 022649          140 DPHSIAERLRRERIAERIRALQELVPSV---NKTDRAAMLDEIVDYVKFLRLQVKVLSMS  196 (294)
Q Consensus       140 ~~h~~~ER~RRerIne~~~~L~~LVP~~---~K~DkAsiL~eAI~YIk~Lq~qv~~L~~~  196 (294)
                      ..|+..||+||++||++|..|+.|||++   .|++|++||..||+||++|+.+++.|...
T Consensus         3 ~~Hn~~Er~RR~~in~~f~~L~~llP~~~~~~k~sK~~iL~~A~~yI~~L~~~~~~l~~~   62 (79)
T d1nlwa_           3 STHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQ   62 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4699999999999999999999999976   48999999999999999999999998754

>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Max protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=2.1e-13  Score=103.43  Aligned_cols=56  Identities=30%  Similarity=0.588  Sum_probs=52.5

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHcccCCC--CCcChHhHHHHHHHHHHHHHHHHHHHcc
Q 022649          140 DPHSIAERLRRERIAERIRALQELVPSV--NKTDRAAMLDEIVDYVKFLRLQVKVLSM  195 (294)
Q Consensus       140 ~~h~~~ER~RRerIne~~~~L~~LVP~~--~K~DkAsiL~eAI~YIk~Lq~qv~~L~~  195 (294)
                      ..|+..||+||++||+.|..|++|||++  .|++|++||..||+||++|+.+++.|..
T Consensus         4 ~~Hn~~Er~RR~~in~~f~~L~~llP~~~~~k~sK~~iL~~A~~yI~~L~~~~~~l~~   61 (83)
T d1nkpb_           4 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQ   61 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4699999999999999999999999965  6899999999999999999999998885

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=2.3e-13  Score=104.24  Aligned_cols=57  Identities=21%  Similarity=0.415  Sum_probs=52.9

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHcccCCC---CCcChHhHHHHHHHHHHHHHHHHHHHccc
Q 022649          140 DPHSIAERLRRERIAERIRALQELVPSV---NKTDRAAMLDEIVDYVKFLRLQVKVLSMS  196 (294)
Q Consensus       140 ~~h~~~ER~RRerIne~~~~L~~LVP~~---~K~DkAsiL~eAI~YIk~Lq~qv~~L~~~  196 (294)
                      ..|+.+||+||++||+.|..|+.+||++   .|++|++||..||+||++|+.+++.|...
T Consensus         8 ~~Hn~~Er~RR~~in~~f~~Lr~llP~~~~~~k~sK~~iL~~A~~yI~~L~~~~~~l~~~   67 (88)
T d1nkpa_           8 RTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISE   67 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4699999999999999999999999975   57999999999999999999999998763

>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Usf B/HLH domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=8.9e-14  Score=101.46  Aligned_cols=52  Identities=27%  Similarity=0.491  Sum_probs=47.6

Q ss_pred             CCCcchhHHHHHHHHHHHHHHHHcccCCC------CCcChHhHHHHHHHHHHHHHHHH
Q 022649          139 TDPHSIAERLRRERIAERIRALQELVPSV------NKTDRAAMLDEIVDYVKFLRLQV  190 (294)
Q Consensus       139 ~~~h~~~ER~RRerIne~~~~L~~LVP~~------~K~DkAsiL~eAI~YIk~Lq~qv  190 (294)
                      +..|+.+||+||++||++|.+|+.|||.+      .|++|++||..||+||++||++.
T Consensus         6 R~~H~~~Er~RR~~in~~f~~L~~lvP~~~~~~~~~k~sK~~iL~~av~yI~~Lq~~~   63 (65)
T d1an4a_           6 RAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN   63 (65)
T ss_dssp             CCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence            46799999999999999999999999975      38999999999999999998753

>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=1.3e-13  Score=99.49  Aligned_cols=48  Identities=27%  Similarity=0.495  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHHcccCCC-CCcChHhHHHHHHHHHHHHHHHHHHHcccc
Q 022649          150 RERIAERIRALQELVPSV-NKTDRAAMLDEIVDYVKFLRLQVKVLSMSR  197 (294)
Q Consensus       150 RerIne~~~~L~~LVP~~-~K~DkAsiL~eAI~YIk~Lq~qv~~L~~~~  197 (294)
                      |++||++|.+|+.|||++ .|+|||+||.+||+||++||.+++.|+..+
T Consensus         1 R~~in~~f~~L~~lvP~~~~K~~Ka~iL~~Ai~YI~~Lq~~~~~L~~e~   49 (61)
T d1uklc_           1 RSSINDKIIELKDLVMGTDAKMHKSGVLRKAIDYIKYLQQVNHKLRQEN   49 (61)
T ss_dssp             CCCHHHHHHHHHHHHSCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            678999999999999987 599999999999999999999999998753