Citrus Sinensis ID: 022653

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290----
MVRAFKMKGQKRKKKRDEKYDREEEEEEKEEVEEEELNDSGKRAKLEKTSQNDNKKGEEDGQEEKDVVVHEMEGIPIAPSDQNTKRPGVIFVLEKASLEVAKVGKSYQILNSDDHSNFLRRNNKNPADYRPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKNPVTQYLPVNSRKIGFSYSSEKLVKMRNYVASISDDDNLVFVVGAMAHGKIDCDYTDDLIAISGYPLSAARCIARICEALEDKWNLL
ccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccEEEEEccccccccccHHHHHHHHHcccccccccccHHHHHHHHHHccHHHHcccccEEEEEEcccEEEEEcccccccccHHHHHHHHHHHHHHccccccccccccEEEEEcccccccccccEEEEEEccccccccHHHHHHHHcccccEEEEEcccccccccccccccEEEEEcccccHHHHHHHHHHHHHHHcccc
cccccEEcccccHcccccccccccHHHHHHHccHHHcccccccccHHHccccccccccccccccccccHHHccccccccccccccccEEEEEEEccEEEEEEccccEEEEccHHHHHHHHHccccHHcccccHHHHHHHHHHccHHHHccccEEEEEEEcccEEEEEcccccccccHHHHHHHHHHHHHHccccccccccHHHEEEcccHHHcccccccEEEEEEcccccccHHHHHHHccccccEEEEEEccccccccHHccccEEEEccccHHHHHHHHHHHHHHHHHHccc
mvrafkmkgqkrkkkrdekydreeeEEEKEEVEEEElndsgkraklektsqndnkkgeedgqeeKDVVVHEmegipiapsdqntkrpgVIFVLEKASLEVAKVgksyqilnsddhsnflrrnnknpadyrpdIVHQALLSILDSRLTKAGRLQAVYVRtdkgvlfevkphvrlprtYKRFAGIMLQLLQKLSITAVGKREKLLRVIKnpvtqylpvnsrkigfsysSEKLVKMRNYVasisdddnLVFVVGAMahgkidcdytddliaisgypLSAARCIARICEALEDKWNLL
mvrafkmkgqkrkkkrdekydreeeeeekeeveeeelndsgkraklektsqndnkkgeedgqeekDVVVHEMEGipiapsdqntkrpGVIFVLEKASLEVAKVGksyqilnsddhsnFLRRNNKNPADYRPDIVHQALLSILDSRLTKAGRLQAVyvrtdkgvlfevkphvrlprTYKRFAGIMLQLLQKLSITAVGKREKLLrviknpvtqylpvnsrkigFSYSSEKLVKMRNYVASISDDDNLVFVVGAMAHGKIDCDYTDDLIAISGYPLSAARCIARICEALEDKWNLL
MVRAFKMKGQkrkkkrdekydreeeeeekeeveeeeLNDSGKRAKLEKTSQNDNkkgeedgqeekdvvvHEMEGIPIAPSDQNTKRPGVIFVLEKASLEVAKVGKSYQILNSDDHSNFLRRNNKNPADYRPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKNPVTQYLPVNSRKIGFSYSSEKLVKMRNYVASISDDDNLVFVVGAMAHGKIDCDYTDDLIAISGYPLSAARCIARICEALEDKWNLL
***************************************************************************************GVIFVLEKASLEVAKVGKSYQILNS*****F*********DYRPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKNPVTQYLPVNSRKIGFSYSSEKLVKMRNYVASISDDDNLVFVVGAMAHGKIDCDYTDDLIAISGYPLSAARCIARICEALEDKW***
*****************************************************************************************IFVLEKASLEVAKVGKSYQILNSDDHSNFLRRNNKNPADYRPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKL**********LLRVIKNPVTQYLPVNSRKIGFSYSSEKLVKMRNYVASISDDDNLVFVVGAMAHGKIDCDYTDDLIAISGYPLSAARCIARICEALEDKWNLL
*****************************************KRAKL*******************DVVVHEMEGIPIAPSDQNTKRPGVIFVLEKASLEVAKVGKSYQILNSDDHSNFLRRNNKNPADYRPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKNPVTQYLPVNSRKIGFSYSSEKLVKMRNYVASISDDDNLVFVVGAMAHGKIDCDYTDDLIAISGYPLSAARCIARICEALEDKWNLL
***********************************************************************MEGIPIAP****TKRPGVIFVLEKASLEVAKVGKSYQILNSDDHSNFLRRNNKNPADYRPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKNPVTQYLPVNSRKIGFSYSSEKLVKMRNYVASISDDDNLVFVVGAMAHGKIDCDYTDDLIAISGYPLSAARCIARICEALEDKWNLL
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MVRAFKMKGQKRxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxRAKLEKTSQNDNKKGEEDGQEEKDVVVHEMEGIPIAPSDQNTKRPGVIFVLEKASLEVAKVGKSYQILNSDDHSNFLRRNNKNPADYRPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKNPVTQYLPVNSRKIGFSYSSEKLVKMRNYVASISDDDNLVFVVGAMAHGKIDCDYTDDLIAISGYPLSAARCIARICEALEDKWNLL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query294 2.2.26 [Sep-21-2011]
O35130244 Ribosomal RNA small subun yes no 0.687 0.827 0.504 1e-55
Q92979244 Ribosomal RNA small subun yes no 0.687 0.827 0.495 2e-54
Q9XX15231 Ribosomal RNA small subun yes no 0.683 0.870 0.512 4e-54
Q10107359 Probable ribosomal RNA sm yes no 0.741 0.607 0.489 4e-53
Q9W4J5252 Ribosomal RNA small subun yes no 0.697 0.813 0.464 2e-52
Q06287252 Ribosomal RNA small subun yes no 0.734 0.857 0.446 4e-52
Q9P8P7267 Ribosomal RNA small subun N/A no 0.731 0.805 0.435 3e-50
Q96UP2229 Ribosomal RNA small subun yes no 0.734 0.943 0.444 5e-44
Q5JI44220 Ribosomal RNA small subun yes no 0.615 0.822 0.306 4e-14
O50087229 Ribosomal RNA small subun yes no 0.605 0.777 0.322 1e-12
>sp|O35130|NEP1_MOUSE Ribosomal RNA small subunit methyltransferase NEP1 OS=Mus musculus GN=Emg1 PE=1 SV=1 Back     alignment and function desciption
 Score =  216 bits (551), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 104/206 (50%), Positives = 142/206 (68%), Gaps = 4/206 (1%)

Query: 89  VIFVLEKASLEVAKVGKSYQILNSDDHSNFLRRNNKNPADYRPDIVHQALLSILDSRLTK 148
           +I VLE ASLE  KVGK+Y++LN D H + L +N ++P + RPDI HQ+LL ++DS L +
Sbjct: 43  LIVVLEGASLETVKVGKTYELLNCDRHKSMLLKNGRDPGEVRPDITHQSLLMLMDSPLNR 102

Query: 149 AGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKN 208
           AG LQ VY+ T K VL EV P  R+PRT+ RF G+M+QLL KLS+ A    +KLL+VIKN
Sbjct: 103 AGLLQ-VYIHTQKNVLIEVNPQTRIPRTFDRFCGLMVQLLHKLSVRAADGPQKLLKVIKN 161

Query: 209 PVTQYLPVNSRKIGFSYSSEKLVKMRNYVASISDDDNLVFVVGAMAHGKIDCDYTDDLIA 268
           PV+ + PV   KIG S+S E +  +R  V S    D +VFVVGA AHGK+  +YT+ +++
Sbjct: 162 PVSDHFPVGCMKIGTSFSVEDISDIRELVPS---SDPVVFVVGAFAHGKVSVEYTEKMVS 218

Query: 269 ISGYPLSAARCIARICEALEDKWNLL 294
           IS YPLSAA   A++  A E+ W ++
Sbjct: 219 ISNYPLSAALTCAKVTTAFEEVWGVI 244
Involved in 40S ribosomal subunit biogenesis and 18S rRNA processing. Specifically catalyzes the N1-methylation of the pseudouridine corresponding to position 1248 in human 18S rRNA. Thus, appears to be the methyltransferase involved in the biosynthesis of the hypermodified N1-methyl-N3-(3-amino-3-carboxypropyl) pseudouridine (m1acp3-Psi) conserved in eukaryotic 18S rRNA.
Mus musculus (taxid: 10090)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: -
>sp|Q92979|NEP1_HUMAN Ribosomal RNA small subunit methyltransferase NEP1 OS=Homo sapiens GN=EMG1 PE=1 SV=4 Back     alignment and function description
>sp|Q9XX15|NEP1_CAEEL Ribosomal RNA small subunit methyltransferase nep-1 OS=Caenorhabditis elegans GN=Y39A1A.14 PE=3 SV=1 Back     alignment and function description
>sp|Q10107|MRA1_SCHPO Probable ribosomal RNA small subunit methyltransferase mra1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mra1 PE=1 SV=2 Back     alignment and function description
>sp|Q9W4J5|NEP1_DROME Ribosomal RNA small subunit methyltransferase NEP1 OS=Drosophila melanogaster GN=CG3527 PE=3 SV=2 Back     alignment and function description
>sp|Q06287|NEP1_YEAST Ribosomal RNA small subunit methyltransferase NEP1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=EMG1 PE=1 SV=1 Back     alignment and function description
>sp|Q9P8P7|NEP1_CANAX Ribosomal RNA small subunit methyltransferase NEP1 OS=Candida albicans GN=NEP1 PE=3 SV=1 Back     alignment and function description
>sp|Q96UP2|NEP1_CANGA Ribosomal RNA small subunit methyltransferase NEP1 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=NEP1 PE=3 SV=1 Back     alignment and function description
>sp|Q5JI44|NEP1_PYRKO Ribosomal RNA small subunit methyltransferase Nep1 OS=Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) GN=nep1 PE=3 SV=1 Back     alignment and function description
>sp|O50087|NEP1_PYRHO Ribosomal RNA small subunit methyltransferase Nep1 OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=nep1 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query294
255581478294 Nucleolar essential protein, putative [R 0.976 0.976 0.730 1e-118
297739930319 unnamed protein product [Vitis vinifera] 0.921 0.849 0.676 1e-107
225441240271 PREDICTED: ribosomal RNA small subunit m 0.921 1.0 0.676 1e-107
225465341271 PREDICTED: ribosomal RNA small subunit m 0.921 1.0 0.690 1e-106
388522811272 unknown [Lotus japonicus] 0.925 1.0 0.656 1e-106
224086843284 predicted protein [Populus trichocarpa] 0.755 0.781 0.815 1e-105
358248388276 uncharacterized protein LOC100788480 [Gl 0.935 0.996 0.630 1e-102
15230180298 nucleolar essential protein-related prot 0.996 0.983 0.622 1e-101
358248662282 uncharacterized protein LOC100778294 [Gl 0.959 1.0 0.632 1e-99
21593563298 unknown [Arabidopsis thaliana] 0.965 0.953 0.610 2e-99
>gi|255581478|ref|XP_002531546.1| Nucleolar essential protein, putative [Ricinus communis] gi|223528837|gb|EEF30840.1| Nucleolar essential protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  430 bits (1105), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 220/301 (73%), Positives = 250/301 (83%), Gaps = 14/301 (4%)

Query: 1   MVRAFKMKGQKRKKKRDEKYDREEEEEEKEEVEEEELNDSGKRAKLEKTS---QNDNKKG 57
           MVR + +KG KRKK R+EKYD+  +E +      E+  +S KRA L KT    +N +KK 
Sbjct: 1   MVRPYGIKGPKRKK-REEKYDKVGDEVD------EQTEESAKRAMLSKTEMPLENCSKKT 53

Query: 58  EEDGQEEKDVVVHE----MEGIPIAPSDQNTKRPGVIFVLEKASLEVAKVGKSYQILNSD 113
           E++ + ++   +      MEGIPI PSD  TK+PGVIFVLEKASLEVAKVGK+YQILNSD
Sbjct: 54  EQEEEGDEGEELEGEVQEMEGIPIMPSDSKTKKPGVIFVLEKASLEVAKVGKTYQILNSD 113

Query: 114 DHSNFLRRNNKNPADYRPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRL 173
           DH+NFLR+NNKNPADYRPDIV+QALLSILDS L KAGRLQAVYV+T+KGVLFEVKP+VR+
Sbjct: 114 DHANFLRKNNKNPADYRPDIVYQALLSILDSPLNKAGRLQAVYVKTEKGVLFEVKPYVRI 173

Query: 174 PRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKNPVTQYLPVNSRKIGFSYSSEKLVKM 233
           PRTYKRF GIMLQLLQKLSITA GKREKLLRVIKNPVTQYLPVNSRKIGFSYSS+KLVKM
Sbjct: 174 PRTYKRFTGIMLQLLQKLSITAAGKREKLLRVIKNPVTQYLPVNSRKIGFSYSSDKLVKM 233

Query: 234 RNYVASISDDDNLVFVVGAMAHGKIDCDYTDDLIAISGYPLSAARCIARICEALEDKWNL 293
            NYVA++ DD  LVFVVGAMAHGKIDCDY DD IAISGYPLSAA CI+RICEAL DKW +
Sbjct: 234 SNYVAAVDDDVGLVFVVGAMAHGKIDCDYIDDFIAISGYPLSAAWCISRICEALADKWGV 293

Query: 294 L 294
           L
Sbjct: 294 L 294

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297739930|emb|CBI30112.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225441240|ref|XP_002273311.1| PREDICTED: ribosomal RNA small subunit methyltransferase nep-1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225465341|ref|XP_002275293.1| PREDICTED: ribosomal RNA small subunit methyltransferase nep-1 [Vitis vinifera] gi|296085405|emb|CBI29137.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|388522811|gb|AFK49467.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|224086843|ref|XP_002307982.1| predicted protein [Populus trichocarpa] gi|222853958|gb|EEE91505.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|358248388|ref|NP_001239618.1| uncharacterized protein LOC100788480 [Glycine max] gi|255636540|gb|ACU18608.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|15230180|ref|NP_191259.1| nucleolar essential protein-related protein [Arabidopsis thaliana] gi|6911870|emb|CAB72170.1| putative protein [Arabidopsis thaliana] gi|28466945|gb|AAO44081.1| At3g57000 [Arabidopsis thaliana] gi|110735698|dbj|BAE99829.1| hypothetical protein [Arabidopsis thaliana] gi|332646076|gb|AEE79597.1| nucleolar essential protein-related protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|358248662|ref|NP_001239919.1| uncharacterized protein LOC100778294 [Glycine max] gi|255636941|gb|ACU18803.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|21593563|gb|AAM65530.1| unknown [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query294
TAIR|locus:2080645298 AT3G57000 [Arabidopsis thalian 0.870 0.859 0.640 2.6e-86
RGD|1307665244 Emg1 "EMG1 nucleolar protein h 0.687 0.827 0.504 6.5e-51
MGI|MGI:1315195244 Emg1 "EMG1 nucleolar protein h 0.687 0.827 0.504 8.3e-51
UNIPROTKB|F1N532244 EMG1 "Uncharacterized protein" 0.687 0.827 0.5 1.7e-50
UNIPROTKB|I3LPQ4244 EMG1 "Uncharacterized protein" 0.687 0.827 0.5 3.6e-50
UNIPROTKB|Q92979244 EMG1 "Ribosomal RNA small subu 0.687 0.827 0.495 7.4e-50
WB|WBGene00012652231 Y39A1A.14 [Caenorhabditis eleg 0.724 0.922 0.486 7.4e-50
UNIPROTKB|Q9XX15231 Y39A1A.14 "Ribosomal RNA small 0.724 0.922 0.486 7.4e-50
ASPGD|ASPL0000035794260 AN2759 [Emericella nidulans (t 0.734 0.830 0.465 1.2e-49
UNIPROTKB|E2RKH8244 EMG1 "Uncharacterized protein" 0.687 0.827 0.495 1.5e-49
TAIR|locus:2080645 AT3G57000 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 863 (308.9 bits), Expect = 2.6e-86, P = 2.6e-86
 Identities = 166/259 (64%), Positives = 208/259 (80%)

Query:    39 DSGKRAKLEKTSQNDNXXXXXXXXXXXXXXXHEMEG-IPIAPSDQNTKRPGVIFVLEKAS 97
             +S K+AK E TS+ +                 ++ G IPI  +  N ++ G++FVLEKAS
Sbjct:    40 ESSKKAKKESTSRAEEDNDEEEVTVEATAAAEDIVGGIPIVLNAPNKEKSGIVFVLEKAS 99

Query:    98 LEVAKVGKSYQILNSDDHSNFLRRNNKNPADYRPDIVHQALLSILDSRLTKAGRLQAVYV 157
             LEVAKVGK+YQ+LNSDDH+NFL++NN+NPADYRPDI HQALL ILDS + KAGRL+AVYV
Sbjct:   100 LEVAKVGKTYQLLNSDDHANFLKKNNRNPADYRPDITHQALLMILDSPVNKAGRLKAVYV 159

Query:   158 RTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKNPVTQY-LPV 216
             RT+KGVLFEVKPHVR+PRT+KRFAGIMLQLLQKLSITAV  REKLLR +KNP+ ++ LPV
Sbjct:   160 RTEKGVLFEVKPHVRIPRTFKRFAGIMLQLLQKLSITAVNSREKLLRCVKNPIEEHHLPV 219

Query:   217 NSRKIGFSYSSEKLVKMRNYVASISDDD-NLVFVVGAMAHGKIDCDYTDDLIAISGYPLS 275
             NS +IGFS+SSEKLV M+ ++A++ DDD + VFVVGAMAHGKIDC+Y D+ +++S YPLS
Sbjct:   220 NSHRIGFSHSSEKLVNMQKHLATVCDDDRDTVFVVGAMAHGKIDCNYIDEFVSVSEYPLS 279

Query:   276 AARCIARICEALEDKWNLL 294
             AA CI+RICEAL   WN++
Sbjct:   280 AAYCISRICEALATNWNII 298
GO:0005634 "nucleus" evidence=ISM
GO:0008168 "methyltransferase activity" evidence=IEA
GO:0006626 "protein targeting to mitochondrion" evidence=RCA
GO:0009640 "photomorphogenesis" evidence=RCA
GO:0009909 "regulation of flower development" evidence=RCA
GO:0010388 "cullin deneddylation" evidence=RCA
GO:0034968 "histone lysine methylation" evidence=RCA
RGD|1307665 Emg1 "EMG1 nucleolar protein homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1315195 Emg1 "EMG1 nucleolar protein homolog (S. cerevisiae)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1N532 EMG1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|I3LPQ4 EMG1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q92979 EMG1 "Ribosomal RNA small subunit methyltransferase NEP1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
WB|WBGene00012652 Y39A1A.14 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|Q9XX15 Y39A1A.14 "Ribosomal RNA small subunit methyltransferase nep-1" [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
ASPGD|ASPL0000035794 AN2759 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|E2RKH8 EMG1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O35130NEP1_MOUSE2, ., 1, ., 1, ., -0.50480.68700.8278yesno
Q9XX15NEP1_CAEEL2, ., 1, ., 1, ., -0.51230.68360.8701yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query294
pfam03587200 pfam03587, EMG1, EMG1/NEP1 methyltransferase 2e-78
COG1756223 COG1756, Mra1, Uncharacterized conserved protein [ 2e-45
PRK04171222 PRK04171, PRK04171, ribosome biogenesis protein; P 5e-25
pfam05432291 pfam05432, BSP_II, Bone sialoprotein II (BSP-II) 4e-04
pfam03064238 pfam03064, U79_P34, HSV U79 / HCMV P34 0.004
>gnl|CDD|217628 pfam03587, EMG1, EMG1/NEP1 methyltransferase Back     alignment and domain information 
 Score =  235 bits (603), Expect = 2e-78
 Identities = 91/204 (44%), Positives = 122/204 (59%), Gaps = 10/204 (4%)

Query: 91  FVLEKASLEVAKVGK--SYQILNSDDHSNFLRRNNKNPADYRPDIVHQALLSILDSRLTK 148
            VLE+A+LE+    K   Y++L+SDDH   +++  K     RPDIVHQ LL +LDS L K
Sbjct: 1   IVLEEAALELVPREKKPGYELLDSDDHYAAMKKLKKKEKRGRPDIVHQCLLMLLDSPLNK 60

Query: 149 AGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKN 208
           AG L+ VY+ T  GVL EV P  R+PR Y RF G+M QLL+K  + A G  E LL+V+KN
Sbjct: 61  AGLLR-VYIHTRDGVLIEVSPETRVPRNYNRFVGLMEQLLKKGRVPAEGG-EPLLKVVKN 118

Query: 209 PVTQYLPVNSRKIGFSYSSEKLVKMRNYVASISDDDNLVFVVGAMAHG--KIDCDYTD-- 264
           P+T  LP  ++KI  S   EK V  +  V+ +  +  + FV+GA  HG    + DY    
Sbjct: 119 PLTDLLPEGAKKILLSEKGEK-VSPKELVSELL-NKPVAFVIGAFPHGDFSDEVDYKKAD 176

Query: 265 DLIAISGYPLSAARCIARICEALE 288
           +  +IS YPLSA    +RIC A E
Sbjct: 177 ESYSISNYPLSAWTVCSRICHAFE 200

Members of this family are essential for 40S ribosomal biogenesis. The structure of EMG1 has revealed that it is a novel member of the superfamily of alpha/beta knot fold methyltransferases. Length = 200
>gnl|CDD|224670 COG1756, Mra1, Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>gnl|CDD|235238 PRK04171, PRK04171, ribosome biogenesis protein; Provisional Back     alignment and domain information
>gnl|CDD|114172 pfam05432, BSP_II, Bone sialoprotein II (BSP-II) Back     alignment and domain information
>gnl|CDD|217348 pfam03064, U79_P34, HSV U79 / HCMV P34 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 294
KOG3073236 consensus Protein required for 18S rRNA maturation 100.0
PRK04171222 ribosome biogenesis protein; Provisional 100.0
PF03587202 EMG1: EMG1/NEP1 methyltransferase; InterPro: IPR00 100.0
COG1756223 Mra1 Uncharacterized conserved protein [Function u 100.0
PF02590155 SPOUT_MTase: Predicted SPOUT methyltransferase; In 95.82
PRK00103157 rRNA large subunit methyltransferase; Provisional 94.25
PRK02135201 hypothetical protein; Provisional 93.91
PF04013199 Methyltrn_RNA_2: Putative SAM-dependent RNA methyl 93.87
TIGR00246153 tRNA_RlmH_YbeA rRNA large subunit m3Psi methyltran 93.12
COG1576155 Uncharacterized conserved protein [Function unknow 92.71
COG1901197 Uncharacterized conserved protein [Function unknow 90.78
>KOG3073 consensus Protein required for 18S rRNA maturation and 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=2.5e-82  Score=566.27  Aligned_cols=234  Identities=59%  Similarity=0.954  Sum_probs=220.6

Q ss_pred             hhhhhhhhhccccCCccCCCcccccchhhhhhhhhcCCCCCCCCCCCCCCeEEEEEcCCccceeeecCeeeeeCchhhHH
Q 022653           38 NDSGKRAKLEKTSQNDNKKGEEDGQEEKDVVVHEMEGIPIAPSDQNTKRPGVIFVLEKASLEVAKVGKSYQILNSDDHSN  117 (294)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~liiVL~~A~LEl~k~gK~~~LLn~d~H~~  117 (294)
                      +++...++.++++...++++++-                     .+.+++++||||+.|+||+.|+| +|+|||||+|.+
T Consensus         3 ~e~~~~~~~~~~~~~k~d~~~~~---------------------l~~~~~~~ivVL~~a~le~~Kvg-~y~ll~~d~h~~   60 (236)
T KOG3073|consen    3 VESSRKAKKEKADRAKEDNDEEA---------------------LPKTKKRLIVVLEGASLETAKVG-KYQLLNSDDHAN   60 (236)
T ss_pred             chhhhhcccccccccccCccccc---------------------ccccCCcEEEEecCCCchhhhhh-heeeeccchhhH
Confidence            45666777777777777776651                     11578999999999999999999 999999999999


Q ss_pred             HHHhCCCCCCCCCCcHHHHHHHHhhcchhhhcCCccEEEEEecCCeEEEEcCCCCCCCChhHHHHHHHHHHHcCccccCC
Q 022653          118 FLRRNNKNPADYRPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVG  197 (294)
Q Consensus       118 ~m~kl~~~~k~gRPDIvHq~LL~LLDSPLNKaG~L~~VYIhT~~~~lIeVsP~~RIPRty~RF~GLM~qLL~k~~I~~~~  197 (294)
                      +++|+++++.++||||+|||||+||||||||||+|| |||||..|+||||||++||||||+||+|||+||||+++|++.+
T Consensus        61 ~lkk~~rdp~d~rpDitHQ~Ll~LlDSPlNkAgkLq-Vyi~T~knvLiEvnp~~rIPrtfkrfsglMvqLLhKlsIra~d  139 (236)
T KOG3073|consen   61 FLKKNNRDPADYRPDITHQCLLMLLDSPLNKAGKLQ-VYIHTAKNVLIEVNPQVRIPRTFKRFSGLMVQLLHKLSIRAVD  139 (236)
T ss_pred             HHHhccCCHHhcCCcHHHHHHHHHhcCcccccceeE-EEEEccCceEEEecccccCCCCHHHHHHHHHHHHHHheEeccC
Confidence            999999999999999999999999999999999999 9999999999999999999999999999999999999999999


Q ss_pred             CCcceEEEEeccccccccCCCeEEEEeccCccccchhHHhhhcCCCCCeEEEEccccCCCCCCCCccceEEecCCCccHH
Q 022653          198 KREKLLRVIKNPVTQYLPVNSRKIGFSYSSEKLVKMRNYVASISDDDNLVFVVGAMAHGKIDCDYTDDLIAISGYPLSAA  277 (294)
Q Consensus       198 ~~~~LLkviknpl~~~Lp~~~~~I~LS~~~gk~v~~~~~~~~l~~~~~~vfvIGaf~hGd~~~~~~~e~iSIS~ypLsAa  277 (294)
                      +.+.||+|||||+++|||.||++|+|||++++..+.++++..+.++.++||+||||+||+|+.+|+++.+|||+|||||+
T Consensus       140 ~~~kLlkVvKNPVtdHlPv~~~Ki~lSf~~p~l~~~~~lv~~~~~~~~~v~~Iga~ahg~~~~ey~de~vsiSnYpLSaa  219 (236)
T KOG3073|consen  140 GTEKLLKVVKNPVTDHLPVNSRKIGLSFSGPKLSNVRDLVASLDDDDSVVFVIGAMAHGKISVEYVDEKVSISNYPLSAA  219 (236)
T ss_pred             chHHHHHHhcCcccccCCCCccEEeecCCCcccccHHhhccccCCCCCEEEEEecccccccchhhhhhhcccccCcCcHH
Confidence            99999999999999999999999999999888777999999998888999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhcCC
Q 022653          278 RCIARICEALEDKWNLL  294 (294)
Q Consensus       278 ~vcsrI~~a~E~~wgI~  294 (294)
                      .||+|||++||+.|||+
T Consensus       220 ~~CsKi~~~~Ee~wgIi  236 (236)
T KOG3073|consen  220 LCCSKITSAFEEVWGII  236 (236)
T ss_pred             HHHHHHHHHHHHHhccC
Confidence            99999999999999996

>PRK04171 ribosome biogenesis protein; Provisional Back     alignment and domain information
>PF03587 EMG1: EMG1/NEP1 methyltransferase; InterPro: IPR005304 Members of this family are essential for 40S ribosomal biogenesis Back     alignment and domain information
>COG1756 Mra1 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF02590 SPOUT_MTase: Predicted SPOUT methyltransferase; InterPro: IPR003742 This family of proteins are predicted to be SPOUT methyltransferases [] Back     alignment and domain information
>PRK00103 rRNA large subunit methyltransferase; Provisional Back     alignment and domain information
>PRK02135 hypothetical protein; Provisional Back     alignment and domain information
>PF04013 Methyltrn_RNA_2: Putative SAM-dependent RNA methyltransferase; InterPro: IPR007158 The proteins in this family are around 200 amino acids long with the exception of O29206 from SWISSPROT that has an additional 100 amino acids at its N terminus Back     alignment and domain information
>TIGR00246 tRNA_RlmH_YbeA rRNA large subunit m3Psi methyltransferase RlmH Back     alignment and domain information
>COG1576 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG1901 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query294
3oii_A253 Crystal Structure Of Saccharomyces Cerevisiae Nep1E 3e-53
2v3k_A258 The Yeast Ribosome Synthesis Factor Emg1 Alpha Beta 2e-51
3bbe_A205 M. Jannaschii Nep1 Length = 205 4e-12
3bbd_A205 M. Jannaschii Nep1 Complexed With S-Adenosyl-Homocy 1e-10
3o7b_A244 Crystal Structure Of Archaeoglobus Fulgidus Nep1 Bo 7e-07
>pdb|3OII|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Nep1EMG1 BOUND TO S- Adenosylhomocysteine Length = 253 Back     alignment and structure 
Iteration: 1

 Score =  204 bits (520), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 104/233 (44%), Positives = 155/233 (66%), Gaps = 17/233 (7%)
Query: 75  IPIAP-----SDQNTKRPGVIFVLEKASLEVAKV------GKSYQILNSDDHSNFLRRNN 123
           +P AP      D+ TKR  +I VL  ASLE  K+      G  Y +LN DDH   L++  
Sbjct: 25  VPQAPPVLTSKDKITKR--MIVVLAMASLETHKISSNGPGGDKYVLLNCDDHQGLLKKMG 82
Query: 124 KNPADYRPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGI 183
           ++ ++ RPDI HQ LL++LDS + KAG+LQ VY++T +G+L EV P VR+PRT+KRF+G+
Sbjct: 83  RDISEARPDITHQCLLTLLDSPINKAGKLQ-VYIQTSRGILIEVNPTVRIPRTFKRFSGL 141
Query: 184 MLQLLQKLSITAVGKREKLLRVIKNPVTQYLPVNSRKIGFSYSSEKLVKMRNYVASISDD 243
           M+QLL KLSI +V   EKLL+VIKNP+T +LP   RK+  S+ +  ++++++Y+  + DD
Sbjct: 142 MVQLLHKLSIRSVNSEEKLLKVIKNPITDHLPTKCRKVTLSFDAP-VIRVQDYIEKLDDD 200
Query: 244 DNLVFVVGAMAHGKIDC--DYTDDLIAISGYPLSAARCIARICEALEDKWNLL 294
           +++   VGAMA GK +   +Y D+ + +S YPLSA+   ++ C   ED WN+L
Sbjct: 201 ESICVFVGAMARGKDNFADEYVDEKVGLSNYPLSASVACSKFCHGAEDAWNIL 253
>pdb|2V3K|A Chain A, The Yeast Ribosome Synthesis Factor Emg1 Alpha Beta Knot Fold Methyltransferase Length = 258 Back     alignment and structure
>pdb|3BBE|A Chain A, M. Jannaschii Nep1 Length = 205 Back     alignment and structure
>pdb|3BBD|A Chain A, M. Jannaschii Nep1 Complexed With S-Adenosyl-Homocysteine Length = 205 Back     alignment and structure
>pdb|3O7B|A Chain A, Crystal Structure Of Archaeoglobus Fulgidus Nep1 Bound To S- Adenosylhomocysteine Length = 244 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query294
3oii_A253 Essential for mitotic growth 1; EMG1, scnep1, spou 1e-85
3bbd_A205 Ribosome biogenesis protein NEP1-like; methyltrans 2e-66
3o7b_A244 Ribosome biogenesis NEP1 RNA methyltransferase; sp 3e-66
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-07
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 7e-06
>3oii_A Essential for mitotic growth 1; EMG1, scnep1, spout, ribosome biogenesis, methyltransferase, processing, ribosomal protein; HET: SAH; 1.85A {Saccharomyces cerevisiae} PDB: 3oij_A* 3oin_A* 2v3j_A 2v3k_A* Length = 253 Back     alignment and structure
 Score =  256 bits (655), Expect = 1e-85
 Identities = 99/230 (43%), Positives = 150/230 (65%), Gaps = 11/230 (4%)

Query: 73  EGIPIAPSDQNTKRPGVIFVLEKASLEVAKV------GKSYQILNSDDHSNFLRRNNKNP 126
           +  P+  S     +  +I VL  ASLE  K+      G  Y +LN DDH   L++  ++ 
Sbjct: 27  QAPPVLTSKDKITK-RMIVVLAMASLETHKISSNGPGGDKYVLLNCDDHQGLLKKMGRDI 85

Query: 127 ADYRPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQ 186
           ++ RPDI HQ LL++LDS + KAG+LQ VY++T +G+L EV P VR+PRT+KRF+G+M+Q
Sbjct: 86  SEARPDITHQCLLTLLDSPINKAGKLQ-VYIQTSRGILIEVNPTVRIPRTFKRFSGLMVQ 144

Query: 187 LLQKLSITAVGKREKLLRVIKNPVTQYLPVNSRKIGFSYSSEKLVKMRNYVASISDDDNL 246
           LL KLSI +V   EKLL+VIKNP+T +LP   RK+  S+ +   +++++Y+  + DD+++
Sbjct: 145 LLHKLSIRSVNSEEKLLKVIKNPITDHLPTKCRKVTLSFDAPV-IRVQDYIEKLDDDESI 203

Query: 247 VFVVGAMAHGKID--CDYTDDLIAISGYPLSAARCIARICEALEDKWNLL 294
              VGAMA GK +   +Y D+ + +S YPLSA+   ++ C   ED WN+L
Sbjct: 204 CVFVGAMARGKDNFADEYVDEKVGLSNYPLSASVACSKFCHGAEDAWNIL 253
>3bbd_A Ribosome biogenesis protein NEP1-like; methyltransferase, S-adenosyl-methionin adenosyl-homocysteine, rRNA processing; HET: MSE SAH; 2.15A {Methanocaldococcus jannaschii} SCOP: c.116.1.6 PDB: 3bbe_A 3bbh_A* Length = 205 Back     alignment and structure
>3o7b_A Ribosome biogenesis NEP1 RNA methyltransferase; spout, rRNA processi transferase; HET: TYR SAH; 1.45A {Archaeoglobus fulgidus} Length = 244 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query294
3oii_A253 Essential for mitotic growth 1; EMG1, scnep1, spou 100.0
3bbd_A205 Ribosome biogenesis protein NEP1-like; methyltrans 100.0
3o7b_A244 Ribosome biogenesis NEP1 RNA methyltransferase; sp 100.0
2qmm_A197 UPF0217 protein AF_1056; alpha/beta knot, SAM, str 99.94
3aia_A211 UPF0217 protein MJ1640; DUF358, rRNA methyltransfe 99.91
4fak_A163 Ribosomal RNA large subunit methyltransferase H; a 95.83
1o6d_A163 Hypothetical UPF0247 protein TM0844; structural ge 94.96
2qwv_A208 UPF0217 protein VC_A1059; unknown function, struct 94.76
1to0_A167 Hypothetical UPF0247 protein YYDA; structural geno 94.15
1ns5_A155 Hypothetical protein YBEA; structural genomics, PS 93.03
>3oii_A Essential for mitotic growth 1; EMG1, scnep1, spout, ribosome biogenesis, methyltransferase, processing, ribosomal protein; HET: SAH; 1.85A {Saccharomyces cerevisiae} PDB: 3oij_A* 3oin_A* 2v3j_A 2v3k_A* Back     alignment and structure
Probab=100.00  E-value=1.4e-83  Score=590.78  Aligned_cols=212  Identities=45%  Similarity=0.855  Sum_probs=200.2

Q ss_pred             CCCCCCCeEEEEEcCCccceeee------cCeeeeeCchhhHHHHHhCCCCCCCCCCcHHHHHHHHhhcchhhhcCCccE
Q 022653           81 DQNTKRPGVIFVLEKASLEVAKV------GKSYQILNSDDHSNFLRRNNKNPADYRPDIVHQALLSILDSRLTKAGRLQA  154 (294)
Q Consensus        81 ~~~~~~~~liiVL~~A~LEl~k~------gK~~~LLn~d~H~~~m~kl~~~~k~gRPDIvHq~LL~LLDSPLNKaG~L~~  154 (294)
                      ..+++++||||||++|+||+++.      |++|+|||+++|+++|++++++++||||||||||||+||||||||+|+|| 
T Consensus        34 ~~~~~~~rlivVL~~a~LE~v~~~~~~r~~~~~~LLd~~~H~~~m~k~~~~~~~~RPDIvHq~LL~lldSpLNk~G~L~-  112 (253)
T 3oii_A           34 SKDKITKRMIVVLAMASLETHKISSNGPGGDKYVLLNCDDHQGLLKKMGRDISEARPDITHQCLLTLLDSPINKAGKLQ-  112 (253)
T ss_dssp             TTCCSSCCEEEEEEEECCCEECC---------CEECCTTTCHHHHHHTTCCGGGCCHHHHHHHHHHHHTSHHHHTTCEE-
T ss_pred             ccccCCceEEEEeCCCccceeeccccccCCCCeEeechHHHHHHHHHcCCchhhcCCCHHHHHHHHHhcChhhhcCceE-
Confidence            44467999999999999999884      56799999999999999999999999999999999999999999999999 


Q ss_pred             EEEEecCCeEEEEcCCCCCCCChhHHHHHHHHHHHcCccccCCCCcceEEEEeccccccccCCCeEEEEeccCccccchh
Q 022653          155 VYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKNPVTQYLPVNSRKIGFSYSSEKLVKMR  234 (294)
Q Consensus       155 VYIhT~~~~lIeVsP~~RIPRty~RF~GLM~qLL~k~~I~~~~~~~~LLkviknpl~~~Lp~~~~~I~LS~~~gk~v~~~  234 (294)
                      |||||.+|+||+|||++||||||+||+|||+|||++++|++.+++++||++++|||++|||+|+++|+||++ |+.+++.
T Consensus       113 VYIhT~~~~lIeV~P~~RiPRty~rF~GLM~qLL~k~~I~~~~~~~~LLkvikn~l~d~Lp~~~~kI~ls~~-g~~v~~~  191 (253)
T 3oii_A          113 VYIQTSRGILIEVNPTVRIPRTFKRFSGLMVQLLHKLSIRSVNSEEKLLKVIKNPITDHLPTKCRKVTLSFD-APVIRVQ  191 (253)
T ss_dssp             EEEEETTSCEEEECTTCCCCSSHHHHHHHHHHHHHHSEEEETTEEEEEEEEECSCGGGTSCSSEEEEEECTT-SCBCCHH
T ss_pred             EEEEecCCEEEEECCCCCCCCCHHHHHHHHHHHHhcCcccCCCCCCeeEEEEcCCHHHhCCCCCeEEEEccC-CCccCHH
Confidence            999999999999999999999999999999999999999988788999999999999999999999999966 5689999


Q ss_pred             HHhhhcCCCCCeEEEEccccCC--CCCCCCccceEEecCCCccHHHHHHHHHHHHHhhhcCC
Q 022653          235 NYVASISDDDNLVFVVGAMAHG--KIDCDYTDDLIAISGYPLSAARCIARICEALEDKWNLL  294 (294)
Q Consensus       235 ~~~~~l~~~~~~vfvIGaf~hG--d~~~~~~~e~iSIS~ypLsAa~vcsrI~~a~E~~wgI~  294 (294)
                      +|++.+.++.++||||||||||  +|+.+|+++.||||+||||||+||++||+|||++|||+
T Consensus       192 ~~~~~l~~~~~i~vvVGafahG~~~f~~~~~~e~iSIs~ypLsa~~~c~kic~a~E~~w~i~  253 (253)
T 3oii_A          192 DYIEKLDDDESICVFVGAMARGKDNFADEYVDEKVGLSNYPLSASVACSKFCHGAEDAWNIL  253 (253)
T ss_dssp             HHHHTSCTTCEEEEEEECSSSCCSCTTTTTCSEEEBSCSSCCCHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHhcccCCCeEEEEeeeCCCCCcccchhcceeEEEeCCChhHHHHHHHHHHHHHHHhCcC
Confidence            9999998888999999999999  68899999999999999999999999999999999996
>3bbd_A Ribosome biogenesis protein NEP1-like; methyltransferase, S-adenosyl-methionin adenosyl-homocysteine, rRNA processing; HET: MSE SAH; 2.15A {Methanocaldococcus jannaschii} SCOP: c.116.1.6 PDB: 3bbe_A 3bbh_A* Back     alignment and structure
>3o7b_A Ribosome biogenesis NEP1 RNA methyltransferase; spout, rRNA processi transferase; HET: TYR SAH; 1.45A {Archaeoglobus fulgidus} Back     alignment and structure
>2qmm_A UPF0217 protein AF_1056; alpha/beta knot, SAM, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.85A {Archaeoglobus fulgidus dsm 4304} SCOP: c.116.1.7 Back     alignment and structure
>4fak_A Ribosomal RNA large subunit methyltransferase H; alpha/beta methyltransferase rossmann fold, rRNA methylation rRNA, ribosomal protein; HET: SAM PG4; 1.70A {Staphylococcus aureus} PDB: 1vh0_A Back     alignment and structure
>1o6d_A Hypothetical UPF0247 protein TM0844; structural genomics, unknown function; 1.66A {Thermotoga maritima} SCOP: c.116.1.3 Back     alignment and structure
>2qwv_A UPF0217 protein VC_A1059; unknown function, structural genomics, PSI- 2, protein structure initiative; 2.60A {Vibrio cholerae o1 biovar eltor str} SCOP: c.116.1.7 Back     alignment and structure
>1to0_A Hypothetical UPF0247 protein YYDA; structural genomics, unknown function, PSI, protein structure initiative; 2.50A {Bacillus subtilis} SCOP: c.116.1.3 Back     alignment and structure
>1ns5_A Hypothetical protein YBEA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 1.68A {Escherichia coli} SCOP: c.116.1.3 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 294
d2v3ka1227 c.116.1.6 (A:25-251) Essential for mitotic growth 7e-81
d3bbda1204 c.116.1.6 (A:2-205) Ribosome biogenesis protein NE 8e-69
>d2v3ka1 c.116.1.6 (A:25-251) Essential for mitotic growth 1, EMG1 {Saccharomyces cerevisiae [TaxId: 4932]} Length = 227 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: alpha/beta knot
superfamily: alpha/beta knot
family: EMG1/NEP1-like
domain: Essential for mitotic growth 1, EMG1
species: Saccharomyces cerevisiae [TaxId: 4932]

 Score =  242 bits (618), Expect = 7e-81
 Identities = 100/226 (44%), Positives = 149/226 (65%), Gaps = 12/226 (5%)

Query: 76  PIAPSDQNTKRPGVIFVLEKASLEVAKV------GKSYQILNSDDHSNFLRRNNKNPADY 129
            +   D+ TKR  +I VL  ASLE  K+      G  Y +LN DDH   L++  ++ ++ 
Sbjct: 6   VLTSKDKITKR--MIVVLAMASLETHKISSNGPGGDKYVLLNCDDHQGLLKKMGRDISEA 63

Query: 130 RPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQ 189
           RPDI HQ LL++LDS + KAG+LQ VY++T +G+L EV P VR+PRT+KRF+G+M+QLL 
Sbjct: 64  RPDITHQCLLTLLDSPINKAGKLQ-VYIQTSRGILIEVNPTVRIPRTFKRFSGLMVQLLH 122

Query: 190 KLSITAVGKREKLLRVIKNPVTQYLPVNSRKIGFSYSSEKLVKMRNYVASISDDDNLVFV 249
           KLSI +V   EKLL+VIKNP+T +LP   RK+  S+ +  + ++++Y+  + DD+++   
Sbjct: 123 KLSIRSVNSEEKLLKVIKNPITDHLPTKCRKVTLSFDAPVI-RVQDYIEKLDDDESICVF 181

Query: 250 VGAMAHGK--IDCDYTDDLIAISGYPLSAARCIARICEALEDKWNL 293
           VGAMA GK     +Y D+ + +S YPLSA+   ++ C   ED WN+
Sbjct: 182 VGAMARGKDNFADEYVDEKVGLSNYPLSASVACSKFCHGAEDAWNI 227
>d3bbda1 c.116.1.6 (A:2-205) Ribosome biogenesis protein NEP1 {Methanococcus jannaschii [TaxId: 2190]} Length = 204 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query294
d2v3ka1227 Essential for mitotic growth 1, EMG1 {Saccharomyce 100.0
d3bbda1204 Ribosome biogenesis protein NEP1 {Methanococcus ja 100.0
d1o6da_147 Hypothetical protein TM0844 {Thermotoga maritima [ 95.37
d1to0a_157 Hypothetical protein YydA {Bacillus subtilis [TaxI 94.98
d1vh0a_157 Hypothetical protein SAV0024/SA0023 {Staphylococcu 94.53
d2qwva1201 Uncharacterized protein VCA1059 {Vibrio cholerae [ 92.94
d2qmma1194 Uncharacterized protein AF1056 {Archaeoglobus fulg 88.82
d1ns5a_153 Hypothetical protein YbeA {Escherichia coli [TaxId 86.48
>d2v3ka1 c.116.1.6 (A:25-251) Essential for mitotic growth 1, EMG1 {Saccharomyces cerevisiae [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: alpha/beta knot
superfamily: alpha/beta knot
family: EMG1/NEP1-like
domain: Essential for mitotic growth 1, EMG1
species: Saccharomyces cerevisiae [TaxId: 4932]

Probab=100.00  E-value=5.4e-82  Score=571.86  Aligned_cols=213  Identities=45%  Similarity=0.848  Sum_probs=200.1

Q ss_pred             CCCCCCCCCeEEEEEcCCccceeee------cCeeeeeCchhhHHHHHhCCCCCCCCCCcHHHHHHHHhhcchhhhcCCc
Q 022653           79 PSDQNTKRPGVIFVLEKASLEVAKV------GKSYQILNSDDHSNFLRRNNKNPADYRPDIVHQALLSILDSRLTKAGRL  152 (294)
Q Consensus        79 ~~~~~~~~~~liiVL~~A~LEl~k~------gK~~~LLn~d~H~~~m~kl~~~~k~gRPDIvHq~LL~LLDSPLNKaG~L  152 (294)
                      ....+++++||+|||++|+||++|.      |++|+|||+|+|+++|++++++++||||||||||||+|||||||++|+|
T Consensus         7 ~~~~~~~~~~l~~vL~~a~Le~~k~~~~~~~~~~~~LL~~~~H~~~m~~~~~~~~~~RPDIvH~~LL~l~dSpLnk~g~L   86 (227)
T d2v3ka1           7 LTSKDKITKRMIVVLAMASLETHKISSNGPGGDKYVLLNCDDHQGLLKKMGRDISEARPDITHQCLLTLLDSPINKAGKL   86 (227)
T ss_dssp             CCTTCSSSCCEEEEEEEECCCEECC---------CEECCTTTCHHHHHHTTCCGGGCCHHHHHHHHHHHHTSHHHHTTCE
T ss_pred             CCccCCCCceEEEEECCCcceeeeeccccCCCCccEecccHHHHHHHHHcCCcccccCcCHHHHHHHHHhcChhhhcCce
Confidence            3455577899999999999999886      4559999999999999999999999999999999999999999999999


Q ss_pred             cEEEEEecCCeEEEEcCCCCCCCChhHHHHHHHHHHHcCccccCCCCcceEEEEeccccccccCCCeEEEEeccCccccc
Q 022653          153 QAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKNPVTQYLPVNSRKIGFSYSSEKLVK  232 (294)
Q Consensus       153 ~~VYIhT~~~~lIeVsP~~RIPRty~RF~GLM~qLL~k~~I~~~~~~~~LLkviknpl~~~Lp~~~~~I~LS~~~gk~v~  232 (294)
                      | |||||.+|+||+|||++||||||+||+|||+|||++++|++++++++||++++||+++++|.|+++|+||+ .|+.++
T Consensus        87 ~-VyihT~~~~lI~V~p~~RvPrty~rF~gLm~qLl~~~~i~~~~~~~~Ll~vikn~Itd~lp~~~k~I~LS~-~G~~~~  164 (227)
T d2v3ka1          87 Q-VYIQTSRGILIEVNPTVRIPRTFKRFSGLMVQLLHKLSIRSVNSEEKLLKVIKNPITDHLPTKCRKVTLSF-DAPVIR  164 (227)
T ss_dssp             E-EEEEETTSCEEEECTTCCCCSSHHHHHHHHHHHHHHSEEECTTTCSEEEEEECSCGGGTSCSSEEEEEECT-TSCBCC
T ss_pred             E-EEEEecCCEEEEECCCCcCCCCHHHHHHHHHHHHHhCccccCCCccceeeeeccccccccCCCCeEEEECC-CCCccC
Confidence            9 99999999999999999999999999999999999999999888999999999999999999999999995 467799


Q ss_pred             hhHHhhhcCCCCCeEEEEccccCCC--CCCCCccceEEecCCCccHHHHHHHHHHHHHhhhcC
Q 022653          233 MRNYVASISDDDNLVFVVGAMAHGK--IDCDYTDDLIAISGYPLSAARCIARICEALEDKWNL  293 (294)
Q Consensus       233 ~~~~~~~l~~~~~~vfvIGaf~hGd--~~~~~~~e~iSIS~ypLsAa~vcsrI~~a~E~~wgI  293 (294)
                      +.++++.++++.++||+||||||||  +..+|+++.||||+||||||+||||||++||++|||
T Consensus       165 ~~~l~~~l~~~~~v~~viG~f~~GD~~~~~~yide~ISIsdypLSa~~v~sri~~~~E~~~~i  227 (227)
T d2v3ka1         165 VQDYIEKLDDDESICVFVGAMARGKDNFADEYVDEKVGLSNYPLSASVACSKFCHGAEDAWNI  227 (227)
T ss_dssp             HHHHHHTSCTTCEEEEEEECSSSSCSCTTTTTCSEEEBSCSSCCCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhccCCCEEEEEeeecCCCccccccccceEEEEeCcchhHHHHHHHHHHHHHHHhCc
Confidence            9999999999999999999999999  445799999999999999999999999999999997
>d3bbda1 c.116.1.6 (A:2-205) Ribosome biogenesis protein NEP1 {Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1o6da_ c.116.1.3 (A:) Hypothetical protein TM0844 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1to0a_ c.116.1.3 (A:) Hypothetical protein YydA {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1vh0a_ c.116.1.3 (A:) Hypothetical protein SAV0024/SA0023 {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d2qwva1 c.116.1.7 (A:5-205) Uncharacterized protein VCA1059 {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d2qmma1 c.116.1.7 (A:95-288) Uncharacterized protein AF1056 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1ns5a_ c.116.1.3 (A:) Hypothetical protein YbeA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure