Citrus Sinensis ID: 022654

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290----
Protein Sequence
MMTTLSQTVSVFSNKAINLKSVASFNTIKTLRFNPPSSPRSLSRNFCRVQATILQDEEEKVVVEESSPLKNFPNDDEPPETGSASALEKWVIKFEQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIGKERVLFLALPIRSYSSSIQQY
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHccccccHHHHHHHHccccccccccccccHHHHcccccccHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccEEEcHHHEcccccccccccccccccccccccccHcHHHHHHHHHHHHHccccEEEEcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHEEEHHHHHHcHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcccccEHHcHccccccccccccccccHHHEEcccccccccHcccc
Coil and Loop (DISEMBL)
MMTTLSQTVSVFSNKAInlksvasfntiktlrfnppssprslsrnFCRVQATILQDEEEKVVVeessplknfpnddeppetgsaSALEKWVIKFEQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISprmayhfsecveshafETYDKFIKAQGEklkkmpapavaikyytggdlylfdefqtarlpnsrrpkigkERVLFLALPIRSYSSSIQQY
Flexible Loop (DISEMBL)
MMTTLSQTVSVFSNKAInlksvasfntiktlrfnppssprslsrNFCRVQATilqdeeekvvveessplknfpnddeppeTGSASALEKWVIKFEQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGeklkkmpaPAVAIKYYTGGDLYLFDEFQTarlpnsrrpkigkervlflalpirsysssiqqy
Low Complexity Region (SEG)
MMTTLSQTVSVFSNKAINLKSVASFNTIKTlrfnppssprslsrnfCRVQATILQDeeekvvveeSSPLKNFPNDDEPPETGSASALEKWVIKFEQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIGKERVLFLALPIRSYSSSIQQY
Disordered region (IsUnstruct)
**********VFSNKAINLKSVASFNTIKTLR*************FCRVQATIL********************************LEKWVIKFEQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLP*****KIGKERVLFLALPIR*********
Disordered Region (DISOPRED)
*************************************************************************NDDEPPETGSASALEKWVIKFEQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIGKERVLFLALPIRSYSS*I***
Disordered Region (DISEMBL)
MMTTLSQTVSVFSNKAINLKSVASFNTIKTLRFNPPSSPRSLSRNFCRVQATILQDEE**************************SALEKWVIKFEQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIGKERVLFLALPIRSYSSSIQQY
Disordered Region (DISPRO)
*******TVSVFSNKAINLKSVASFNTIK**********RSLSRNFCRVQATILQDEEEKVVVEESSPL*****************LEKWVIKFEQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIGKERVLFLALPIRSYSSS****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMTTLSQTVSVFSNKAINLKSVASFNTIKTLRFNPPSSPRSLSRNFCRVQATILQDEEEKVVVEESSPLKNFPNDDEPPETGSASALEKWVIKFEQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIGKERVLFLALPIRSYSSSIQQY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	294	2.2.26 [Sep-21-2011]
Q56X52	351	Ubiquinol oxidase 4, chlo	yes	no	0.775	0.649	0.758	1e-105
Q41266	333	Ubiquinol oxidase 2, mito	no	no	0.465	0.411	0.273	4e-10
Q40294	318	Ubiquinol oxidase, mitoch	N/A	no	0.465	0.430	0.287	5e-10
O22049	353	Ubiquinol oxidase 2, mito	no	no	0.465	0.388	0.302	5e-10
Q40578	297	Ubiquinol oxidase 2, mito	N/A	no	0.455	0.451	0.295	1e-08
O03376	326	Alternative oxidase 3, mi	no	no	0.455	0.411	0.309	2e-08
Q8LEE7	318	Ubiquinol oxidase 3, mito	no	no	0.489	0.452	0.253	3e-08
Q41224	353	Ubiquinol oxidase 1, mito	N/A	no	0.452	0.376	0.297	4e-08
O22048	329	Ubiquinol oxidase 1c, mit	no	no	0.465	0.416	0.258	4e-08
Q39219	354	Ubiquinol oxidase 1a, mit	no	no	0.465	0.387	0.273	4e-08

>sp|Q56X52|AOX4_ARATH Ubiquinol oxidase 4, chloroplastic/chromoplastic OS=Arabidopsis thaliana GN=AOX4 PE=1 SV=2

 Score =  382 bits (981), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 176/232 (75%), Positives = 199/232 (85%), Gaps = 4/232 (1%)

Query: 45  NFCRVQATILQDEEEKVVVEES----SPLKNFPNDDEPPETGSASALEKWVIKFEQSVNI 100
           N  RVQATILQD+EEKVVVEES    +     P ++    + S SA E W+IK EQ VN+
Sbjct: 51  NNHRVQATILQDDEEKVVVEESFKAETSTGTEPLEEPNMSSSSTSAFETWIIKLEQGVNV 110

Query: 101 LLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFA 160
            LT+SVI +LD LYRDR YARFFVLETIARVPYFAF+SVLHMYE+FGWWRRADYLKVHFA
Sbjct: 111 FLTDSVIKILDTLYRDRTYARFFVLETIARVPYFAFMSVLHMYETFGWWRRADYLKVHFA 170

Query: 161 ESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHA 220
           ESWNEMHHLLIMEELGGN+WWFDRFLAQHIA  YYF+TVF+Y++SPRMAYHFSECVESHA
Sbjct: 171 ESWNEMHHLLIMEELGGNSWWFDRFLAQHIATFYYFMTVFLYILSPRMAYHFSECVESHA 230

Query: 221 FETYDKFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKI 272
           +ETYDKF+KA GE+LK MPAP +A+KYYTGGDLYLFDEFQT+R PN+RRP I
Sbjct: 231 YETYDKFLKASGEELKNMPAPDIAVKYYTGGDLYLFDEFQTSRTPNTRRPVI 282

Acts early in chloroplast biogenesis as a component of a redox chain responsible for phytoene desaturation. Involved in the differentiation of multiple plastid types, including chloroplasts, amyloplasts, and etioplasts. Might participate in the chloroplast respiratory chain.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: -EC: .EC: -EC: .EC: -

>sp|Q41266|AOX2_SOYBN Ubiquinol oxidase 2, mitochondrial OS=Glycine max GN=AOX2 PE=1 SV=2

 Score = 65.9 bits (159), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 72/139 (51%), Gaps = 2/139 (1%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLL 170
           D  ++ R   R  +LET+A VP      +LH+     + +   ++K    E+ NE  HL+
Sbjct: 147 DLFFKRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRKFQQSGGWIKALLEEAENERMHLM 206

Query: 171 IMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK- 229
            M EL     W++R L   +   ++     +Y++SP++A+     +E  A  +Y +++K 
Sbjct: 207 TMVELVKPK-WYERLLVLAVQGVFFNAFFVLYILSPKVAHRIVGYLEEEAIHSYTEYLKD 265

Query: 230 AQGEKLKKMPAPAVAIKYY 248
            +   ++ +PAPA+AI Y+
Sbjct: 266 LESGAIENVPAPAIAIDYW 284

Catalyzes cyanide-resistant oxygen consumption. May increase respiration when the cytochrome respiratory pathway is restricted, or in response to low temperatures.

Glycine max (taxid: 3847)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q40294|AOX1_MANIN Ubiquinol oxidase, mitochondrial OS=Mangifera indica GN=AOMI 1 PE=1 SV=2

 Score = 65.5 bits (158), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 70/139 (50%), Gaps = 2/139 (1%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLL 170
           D  ++ R   R  +LET+A VP      +LH+       +   ++K    E+ NE  HL+
Sbjct: 132 DIFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKLEQSGGWIKALLEEAENERMHLM 191

Query: 171 IMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK- 229
            M EL     W++R L   +   ++     +YV+SP++A+     +E  A  +Y +++K 
Sbjct: 192 TMVEL-VQPKWYERLLVLAVQGVFFNSFFVLYVLSPKLAHRIVGYLEEEAIHSYTEYLKD 250

Query: 230 AQGEKLKKMPAPAVAIKYY 248
                +K +PAPA+AI Y+
Sbjct: 251 IDSGAIKNIPAPAIAIDYW 269

Catalyzes cyanide-resistant oxygen consumption. May increase respiration when the cytochrome respiratory pathway is restricted, or in response to low temperatures.

Mangifera indica (taxid: 29780)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|O22049|AOX2_ARATH Ubiquinol oxidase 2, mitochondrial OS=Arabidopsis thaliana GN=AOX2 PE=1 SV=2

 Score = 65.5 bits (158), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 69/139 (49%), Gaps = 2/139 (1%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLL 170
           D  ++ R   R  +LET+A VP      +LH+     +     ++K    E+ NE  HL+
Sbjct: 167 DIFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSIRKFEHSGGWIKALLEEAENERMHLM 226

Query: 171 IMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK- 229
            M EL     W++R L   +   ++      YVISPR+A+     +E  A  +Y +F+K 
Sbjct: 227 TMMELV-KPKWYERLLVMLVQGIFFNSFFVCYVISPRLAHRVVGYLEEEAIHSYTEFLKD 285

Query: 230 AQGEKLKKMPAPAVAIKYY 248
               K++ + APA+AI Y+
Sbjct: 286 IDNGKIENVAAPAIAIDYW 304

Catalyzes cyanide-resistant oxygen consumption. May increase respiration when the cytochrome respiratory pathway is restricted, or in response to low temperatures.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q40578|AOX2_TOBAC Ubiquinol oxidase 2, mitochondrial OS=Nicotiana tabacum GN=AOX2 PE=1 SV=2

 Score = 60.8 bits (146), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 73/142 (51%), Gaps = 8/142 (5%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLL 170
           D  ++ R   R  +LET+A VP      +LH      + +   ++K    E+ NE  HL+
Sbjct: 111 DIFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENERMHLM 170

Query: 171 IMEELGGNAWWFDR---FLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKF 227
              E+     W++R   F  Q + +  YFVT   Y++SP++A+     +E  A  +Y +F
Sbjct: 171 TFMEVAKPN-WYERALVFAVQGVFINAYFVT---YLLSPKLAHRIVGYLEEEAIHSYTEF 226

Query: 228 IKAQGE-KLKKMPAPAVAIKYY 248
           +K   +  ++ +PAPA+AI Y+
Sbjct: 227 LKELDKGNIENVPAPAIAIDYW 248

Catalyzes cyanide-resistant oxygen consumption. May increase respiration when the cytochrome respiratory pathway is restricted, or in response to low temperatures.

Nicotiana tabacum (taxid: 4097)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|O03376|AOX3_SOYBN Alternative oxidase 3, mitochondrial OS=Glycine max GN=AOX3 PE=1 SV=1

 Score = 60.1 bits (144), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 73/142 (51%), Gaps = 8/142 (5%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLL 170
           D  +++R      +LETIA VP      +LH+     +     ++K    E+ NE  HL+
Sbjct: 140 DIYFKERYGCHAMMLETIAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLM 199

Query: 171 IMEELGGNAWWFDRFL---AQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKF 227
            M EL   + W +R L   AQ +    +FV    Y++SP+ A+ F   +E  A  +Y + 
Sbjct: 200 TMVELVKPS-WHERLLIFTAQGVFFNAFFV---FYLLSPKAAHRFVGYLEEEAVISYTQH 255

Query: 228 IKA-QGEKLKKMPAPAVAIKYY 248
           + A +  K++ +PAPA+AI Y+
Sbjct: 256 LNAIESGKVENVPAPAIAIDYW 277

Catalyzes cyanide-resistant oxygen consumption. May increase respiration when the cytochrome respiratory pathway is restricted, or in response to low temperatures.

Glycine max (taxid: 3847)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q8LEE7|AOX3_ARATH Ubiquinol oxidase 3, mitochondrial OS=Arabidopsis thaliana GN=AOX3 PE=2 SV=2

 Score = 59.7 bits (143), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 71/146 (48%), Gaps = 2/146 (1%)

Query: 104 ESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESW 163
           +++ + +   ++ +      +LET+A VP      +LH+     +     ++K    E+ 
Sbjct: 125 QTLKIPVQLFFQRKHMCHAMLLETVAAVPGMVGGMLLHLKSLRRFEHSGGWIKALLEEAE 184

Query: 164 NEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFET 223
           NE  HL+   EL     W++R +   +   ++      YVISP++A+  +  +E  A  +
Sbjct: 185 NERMHLMTFIELS-QPKWYERAIVFTVQGVFFNAYFLAYVISPKLAHRITGYLEEEAVNS 243

Query: 224 YDKFIK-AQGEKLKKMPAPAVAIKYY 248
           Y +F+K     K +  PAPA+AI Y+
Sbjct: 244 YTEFLKDIDAGKFENSPAPAIAIDYW 269

Catalyzes cyanide-resistant oxygen consumption. May increase respiration when the cytochrome respiratory pathway is restricted, or in response to low temperatures.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q41224|AOX1_TOBAC Ubiquinol oxidase 1, mitochondrial OS=Nicotiana tabacum GN=AOX1 PE=1 SV=1

 Score = 59.3 bits (142), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 71/141 (50%), Gaps = 8/141 (5%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLL 170
           D  ++ R   R  +LET+A VP      +LH      + +   ++K    E+ NE  HL+
Sbjct: 167 DIFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKTLLDEAENERMHLM 226

Query: 171 IMEELGGNAWWFDR---FLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKF 227
              E+     W++R   F  Q +    YFVT   Y++SP++A+     +E  A  +Y +F
Sbjct: 227 TFMEVA-KPNWYERALVFAVQGVFFNAYFVT---YLLSPKLAHRIVGYLEEEAIHSYTEF 282

Query: 228 IKAQGE-KLKKMPAPAVAIKY 247
           +K   +  ++ +PAPA+AI Y
Sbjct: 283 LKELDKGNIENVPAPAIAIDY 303

Catalyzes cyanide-resistant oxygen consumption. May increase respiration when the cytochrome respiratory pathway is restricted, or in response to low temperatures.

Nicotiana tabacum (taxid: 4097)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|O22048|AOX1C_ARATH Ubiquinol oxidase 1c, mitochondrial OS=Arabidopsis thaliana GN=AOX1C PE=1 SV=1

 Score = 58.9 bits (141), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 68/139 (48%), Gaps = 2/139 (1%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLL 170
           D  ++ R   R  +LET+A VP      ++H      + +   ++K    E+ NE  HL+
Sbjct: 143 DLFFQRRYGCRAIMLETVAAVPGMVGGMLMHFKSLRRFEQSGGWIKALLEEAENERMHLM 202

Query: 171 IMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKA 230
              E+    W ++R L   +   ++   +  Y+ISP+ A+     +E  A  +Y +F+K 
Sbjct: 203 TFMEVAKPKW-YERALVISVQGVFFNAYLIGYIISPKFAHRMVGYLEEEAIHSYTEFLKE 261

Query: 231 -QGEKLKKMPAPAVAIKYY 248
                ++ +PAPA+A+ Y+
Sbjct: 262 LDNGNIENVPAPAIAVDYW 280

Catalyzes cyanide-resistant oxygen consumption. May increase respiration when the cytochrome respiratory pathway is restricted, or in response to low temperatures.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q39219|AOX1A_ARATH Ubiquinol oxidase 1a, mitochondrial OS=Arabidopsis thaliana GN=AOX1A PE=1 SV=2

 Score = 58.9 bits (141), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 67/139 (48%), Gaps = 2/139 (1%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLL 170
           D  ++ R   R  +LET+A VP      +LH      + +   ++K    E+ NE  HL+
Sbjct: 168 DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENERMHLM 227

Query: 171 IMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKA 230
              E+     W++R L   +   ++      Y+ISP+ A+     +E  A  +Y +F+K 
Sbjct: 228 TFMEVAKPK-WYERALVITVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKE 286

Query: 231 -QGEKLKKMPAPAVAIKYY 248
                ++ +PAPA+AI Y+
Sbjct: 287 LDKGNIENVPAPAIAIDYW 305

Catalyzes cyanide-resistant oxygen consumption. May increase respiration when the cytochrome respiratory pathway is restricted, or in response to low temperatures.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	294
297745709	294	unnamed protein product [Vitis vinifera]	0.959	0.959	0.701	1e-115
359496713	281	PREDICTED: alternative oxidase 4, chloro	0.925	0.967	0.708	1e-112
255554747	356	Alternative oxidase 4, chloroplast precu	0.935	0.772	0.667	1e-109
449455371	355	PREDICTED: ubiquinol oxidase 4, chloropl	0.860	0.712	0.719	1e-109
428161219	365	plastid terminal oxidase [Daucus carota]	0.901	0.726	0.684	1e-106
350536613	366	plastid quinol oxidase [Solanum lycopers	0.904	0.726	0.691	1e-106
224116034	358	predicted protein [Populus trichocarpa]	0.833	0.684	0.746	1e-104
357447777	342	Alternative oxidase [Medicago truncatula	0.914	0.786	0.655	1e-104
297799790	351	hypothetical protein ARALYDRAFT_492640 [	0.829	0.695	0.737	1e-104
388507484	342	unknown [Medicago truncatula]	0.914	0.786	0.651	1e-104

>gi|297745709|emb|CBI41031.3| unnamed protein product [Vitis vinifera]

 Score =  419 bits (1078), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 204/291 (70%), Positives = 233/291 (80%), Gaps = 9/291 (3%)

Query: 1   MMTTLSQTV---SVFSNKAINLKSVASFNTIKTLRFNPPSSPRSLSRNFCRVQATILQDE 57
           M  +LS  V   SV S KA   + + SF++  +   +P SS R LSR F  VQATILQ+ 
Sbjct: 1   MAASLSSAVFVVSVPSLKAKKGRHLGSFSSPNSFHCSPLSSSRFLSRKFHSVQATILQEN 60

Query: 58  EEKVVVEESSPLKNFPNDDE------PPETGSASALEKWVIKFEQSVNILLTESVIMVLD 111
           EEKV VEES    +FP DD       P ++ S+S L +WVIKFEQS N+ LTESVI +LD
Sbjct: 61  EEKVTVEESFQSNSFPEDDSKGCSGAPQDSSSSSVLNRWVIKFEQSFNVFLTESVIKILD 120

Query: 112 ALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLI 171
            LY DRDYARFFVLETIARVPYFAF+SVLHMYESFGWWRRADYLKVHFAESWNEMHHLLI
Sbjct: 121 TLYHDRDYARFFVLETIARVPYFAFMSVLHMYESFGWWRRADYLKVHFAESWNEMHHLLI 180

Query: 172 MEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQ 231
           MEELGGNAWWFDRFLAQHIA+ YYF+TVFMYV+SPRMAYH SECVESHA+ETYDKFIK+Q
Sbjct: 181 MEELGGNAWWFDRFLAQHIAIFYYFMTVFMYVLSPRMAYHLSECVESHAYETYDKFIKSQ 240

Query: 232 GEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIGKERVLFLAL 282
           G++LK +PAP +A++YYT GDLYLFDEFQTAR P SRRPKIG  +VL +AL
Sbjct: 241 GDELKNLPAPEIAVRYYTEGDLYLFDEFQTARAPKSRRPKIGNNQVLSMAL 291

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496713|ref|XP_002271078.2| PREDICTED: alternative oxidase 4, chloroplastic/chromoplastic-like, partial [Vitis vinifera]

 Score =  409 bits (1052), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 199/281 (70%), Positives = 226/281 (80%), Gaps = 9/281 (3%)

Query: 1   MMTTLSQTV---SVFSNKAINLKSVASFNTIKTLRFNPPSSPRSLSRNFCRVQATILQDE 57
           M  +LS  V   SV S KA   + + SF++  +   +P SS R LSR F  VQATILQ+ 
Sbjct: 1   MAASLSSAVFVVSVPSLKAKKGRHLGSFSSPNSFHCSPLSSSRFLSRKFHSVQATILQEN 60

Query: 58  EEKVVVEESSPLKNFPNDDE------PPETGSASALEKWVIKFEQSVNILLTESVIMVLD 111
           EEKV VEES    +FP DD       P ++ S+S L +WVIKFEQS N+ LTESVI +LD
Sbjct: 61  EEKVTVEESFQSNSFPEDDSKGCSGAPQDSSSSSVLNRWVIKFEQSFNVFLTESVIKILD 120

Query: 112 ALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLI 171
            LY DRDYARFFVLETIARVPYFAF+SVLHMYESFGWWRRADYLKVHFAESWNEMHHLLI
Sbjct: 121 TLYHDRDYARFFVLETIARVPYFAFMSVLHMYESFGWWRRADYLKVHFAESWNEMHHLLI 180

Query: 172 MEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQ 231
           MEELGGNAWWFDRFLAQHIA+ YYF+TVFMYV+SPRMAYH SECVESHA+ETYDKFIK+Q
Sbjct: 181 MEELGGNAWWFDRFLAQHIAIFYYFMTVFMYVLSPRMAYHLSECVESHAYETYDKFIKSQ 240

Query: 232 GEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKI 272
           G++LK +PAP +A++YYT GDLYLFDEFQTAR P SRRPKI
Sbjct: 241 GDELKNLPAPEIAVRYYTEGDLYLFDEFQTARAPKSRRPKI 281

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255554747|ref|XP_002518411.1| Alternative oxidase 4, chloroplast precursor, putative [Ricinus communis] gi|223542256|gb|EEF43798.1| Alternative oxidase 4, chloroplast precursor, putative [Ricinus communis]

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 193/289 (66%), Positives = 230/289 (79%), Gaps = 14/289 (4%)

Query: 4   TLSQTVSVFSNKAINLKSVASFNTIKTLRFNPPSSPR-SLSRNFCRVQATILQDEEEKVV 62
           ++S T +       N K+++SF++   L F   SSPR   +   CRVQAT+L++ EEKVV
Sbjct: 5   SISPTTTAAVYAISNSKALSSFSSRNGLSFISLSSPRFKATGKLCRVQATVLRENEEKVV 64

Query: 63  VEESSPLKNFPNDDE---------PPETGSASALEKWVIKFEQSVNILLTESVIMVLDAL 113
           ++E+   K+F +DD+         PP+T    +LE+WVIK EQSVN+ LT+SVI +LDA 
Sbjct: 65  IDETFQPKSFTDDDDGKGGRTGGDPPDT----SLERWVIKLEQSVNVFLTDSVIKILDAF 120

Query: 114 YRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIME 173
           Y DRDYARFFVLETIARVPYFAF+SVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIME
Sbjct: 121 YHDRDYARFFVLETIARVPYFAFMSVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIME 180

Query: 174 ELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGE 233
           ELGGN+WWFDRFLAQHIA+ YY +TVFMY +SPRMAYHFSECVESHA+ TYDKFIKAQGE
Sbjct: 181 ELGGNSWWFDRFLAQHIAIIYYIMTVFMYALSPRMAYHFSECVESHAYATYDKFIKAQGE 240

Query: 234 KLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIGKERVLFLAL 282
           +LKK+PAP VA+KYYT GDLYLFDEFQT+R P+SRRPKI     +FL +
Sbjct: 241 ELKKLPAPEVAVKYYTEGDLYLFDEFQTSRAPHSRRPKIDNLYDVFLNI 289

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455371|ref|XP_004145426.1| PREDICTED: ubiquinol oxidase 4, chloroplastic/chromoplastic-like [Cucumis sativus] gi|449525172|ref|XP_004169592.1| PREDICTED: ubiquinol oxidase 4, chloroplastic/chromoplastic-like [Cucumis sativus]

 Score =  399 bits (1025), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 190/264 (71%), Positives = 217/264 (82%), Gaps = 11/264 (4%)

Query: 15  KAINLKSVASFNTIKTLRFNPPSSPRSLSRNFCRVQATILQDEEEKVVVEESSPLKNFPN 74
           K IN K++ASF    +    P      +SR  CRV AT+L+++EEKVV+EES P K  P 
Sbjct: 21  KPINTKNLASFRIPTSFSARP-----LISRKSCRVMATVLKEDEEKVVLEESFPPKASPI 75

Query: 75  DD------EPPETGSASALEKWVIKFEQSVNILLTESVIMVLDALYRDRDYARFFVLETI 128
            D      + PE+ S++  +KW++K EQSVN+LLT+SVI +LDA Y DR YARFFVLETI
Sbjct: 76  QDGEGGSGQGPESSSSNGFDKWIVKLEQSVNVLLTDSVIKILDAFYHDRHYARFFVLETI 135

Query: 129 ARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQ 188
           ARVPYFAF+SVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGN WWFDRFLAQ
Sbjct: 136 ARVPYFAFVSVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNDWWFDRFLAQ 195

Query: 189 HIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGEKLKKMPAPAVAIKYY 248
           HIAVAYYF+TVFMY+ISPRMAYHFSECVESHAF TYDKF+KA+GE+LKK PAP VA+KYY
Sbjct: 196 HIAVAYYFMTVFMYMISPRMAYHFSECVESHAFSTYDKFLKAEGEELKKQPAPEVAVKYY 255

Query: 249 TGGDLYLFDEFQTARLPNSRRPKI 272
           T GDLYLFDEFQT+R P SRRPKI
Sbjct: 256 TEGDLYLFDEFQTSRAPKSRRPKI 279

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|428161219|gb|ACA53387.2| plastid terminal oxidase [Daucus carota]

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 191/279 (68%), Positives = 220/279 (78%), Gaps = 14/279 (5%)

Query: 18  NLKSVASFNTIKTLRFNP--------PSSPRSLSRNFCRVQATILQDEEEKVVVEESSPL 69
           N+ +  S  +  +LRFNP         SS  S SR   +VQA ILQ+ EEKVVVE+S   
Sbjct: 24  NISNNFSSFSCNSLRFNPLVLPQSCSASSHPSFSRKLFKVQARILQENEEKVVVEDSFQP 83

Query: 70  KNFP------NDDEPPETGSASALEKWVIKFEQSVNILLTESVIMVLDALYRDRDYARFF 123
           K+ P      +D EPP+  S+S +E+WVIK EQS+NILLT+SVI +LD LY DRDYARFF
Sbjct: 84  KSSPEVDGSGSDREPPDGSSSSGIERWVIKLEQSINILLTDSVIKILDTLYHDRDYARFF 143

Query: 124 VLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFD 183
           VLETIARVPYFAF+SVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFD
Sbjct: 144 VLETIARVPYFAFMSVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFD 203

Query: 184 RFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGEKLKKMPAPAV 243
           RFL+QHIAV YYF+  FMY++SPRMAYHFSECVE HAFETYDKFI A+GE LKK+PA  V
Sbjct: 204 RFLSQHIAVFYYFMAAFMYLLSPRMAYHFSECVEHHAFETYDKFINAKGEDLKKLPASKV 263

Query: 244 AIKYYTGGDLYLFDEFQTARLPNSRRPKIGKERVLFLAL 282
           AIKYYT GD+YLFDEFQT+R PN+RRP I     +F+ +
Sbjct: 264 AIKYYTEGDMYLFDEFQTSRAPNTRRPVIDNLYDVFVNI 302

Source: Daucus carota

Species: Daucus carota

Genus: Daucus

Family: Apiaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350536613|ref|NP_001234511.1| plastid quinol oxidase [Solanum lycopersicum] gi|9937099|gb|AAG02286.1|AF177979_1 plastid terminal oxidase [Solanum lycopersicum] gi|9937101|gb|AAG02287.1|AF177980_1 plastid terminal oxidase [Solanum lycopersicum] gi|10505366|gb|AAG18449.1|AF302931_1 plastid quinol oxidase [Solanum lycopersicum] gi|10505368|gb|AAG18450.1|AF302932_1 plastid quinol oxidase [Solanum lycopersicum]

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 188/272 (69%), Positives = 226/272 (83%), Gaps = 6/272 (2%)

Query: 17  INLKSVASFNTIKTLRFNPPSSPRSLSRNFCRVQATILQDEEEKVVVEESSPLKNFPND- 75
            N ++   FN++  +R +  +S  S+SR  CRV+AT+LQ+ EE+VVVE+S   K+FP++ 
Sbjct: 32  CNSQNPCRFNSVFPIRKSDGASRCSVSRKSCRVRATLLQENEEEVVVEKSFAPKSFPDNV 91

Query: 76  -----DEPPETGSASALEKWVIKFEQSVNILLTESVIMVLDALYRDRDYARFFVLETIAR 130
                 +PP+  S++ LEKWVIK EQSVNILLT+SVI +LD LY +R+YARFFVLETIAR
Sbjct: 92  GGGSNGKPPDDSSSNGLEKWVIKLEQSVNILLTDSVIKILDTLYHNRNYARFFVLETIAR 151

Query: 131 VPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHI 190
           VPYFAFISVLHMYESFGWWRRADY+KVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHI
Sbjct: 152 VPYFAFISVLHMYESFGWWRRADYMKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHI 211

Query: 191 AVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGEKLKKMPAPAVAIKYYTG 250
           A+ YYF+TV MY +SPRMAYHFSECVESHA+ETYDKFIK QGE+LK +PAP +A+ YYTG
Sbjct: 212 AIFYYFMTVLMYALSPRMAYHFSECVESHAYETYDKFIKDQGEELKNLPAPKIAVDYYTG 271

Query: 251 GDLYLFDEFQTARLPNSRRPKIGKERVLFLAL 282
           GDLYLFDEFQT+R PN+RRPKI     +F+ +
Sbjct: 272 GDLYLFDEFQTSREPNTRRPKIDNLYDVFMNI 303

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116034|ref|XP_002317190.1| predicted protein [Populus trichocarpa] gi|222860255|gb|EEE97802.1| predicted protein [Populus trichocarpa]

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 188/252 (74%), Positives = 206/252 (81%), Gaps = 7/252 (2%)

Query: 34  NPPSSPRSLSRNFCRVQATIL-QDEEEKVVVEESSPLKNFPNDDEP----PETGSASALE 88
           N  S P   SR  CRVQATIL +DEE+KVVVEES   K F +  EP    P++ S   LE
Sbjct: 43  NRTSHPFLPSRKLCRVQATILREDEEKKVVVEESFQPKTFTH--EPVRGSPQSSSPGGLE 100

Query: 89  KWVIKFEQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGW 148
            W IK EQSVN+ LT+SVI +LD LY DRDYARFFVLETIARVPYFAFISVLHMYESFGW
Sbjct: 101 TWAIKLEQSVNVFLTDSVIKILDTLYHDRDYARFFVLETIARVPYFAFISVLHMYESFGW 160

Query: 149 WRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRM 208
           WRRADYLKVHFAESWNEMHHLLIMEELGGN+WWFDR LAQ IA +YYF+TV MY +SPRM
Sbjct: 161 WRRADYLKVHFAESWNEMHHLLIMEELGGNSWWFDRLLAQVIATSYYFMTVLMYALSPRM 220

Query: 209 AYHFSECVESHAFETYDKFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSR 268
           AYHFSECVESHAF TYDKFIKAQG+ LKK+PAP VA+KYYT GDLYLFDEFQT+R P+SR
Sbjct: 221 AYHFSECVESHAFATYDKFIKAQGDDLKKLPAPEVAVKYYTEGDLYLFDEFQTSRAPHSR 280

Query: 269 RPKIGKERVLFL 280
           RPKI     +FL
Sbjct: 281 RPKIENLYDVFL 292

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357447777|ref|XP_003594164.1| Alternative oxidase [Medicago truncatula] gi|87240787|gb|ABD32645.1| Alternative oxidase [Medicago truncatula] gi|355483212|gb|AES64415.1| Alternative oxidase [Medicago truncatula]

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 192/293 (65%), Positives = 226/293 (77%), Gaps = 24/293 (8%)

Query: 1   MMTTLSQTVSVFSNKAINLKSVASFNTI--KTLRFNPPSSPRSLSRNFCRVQATILQDEE 58
           M +T   + S+F    +N K  +S N++  + L F PP           R+++++LQD+E
Sbjct: 1   MASTAMFSSSLFPITPLN-KLSSSRNSLIFRPLSFRPP---------LFRIRSSLLQDKE 50

Query: 59  EKVVVEESSPLKNFP---------NDDEPPETGSASALEKWVIKFEQSVNILLTESVIMV 109
           +KV+ + + P K  P         NDD+   T S SA EK VIK EQSVNI LT+SVI +
Sbjct: 51  DKVITQNTFPSKTSPLDSVTENSTNDDD---TSSTSAWEKGVIKVEQSVNIFLTDSVIKI 107

Query: 110 LDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHL 169
           LDALYRDR+YARFFVLETIARVPYFAF+S+LHMYESFGWWRRADYLKVHFAESWNEMHHL
Sbjct: 108 LDALYRDRNYARFFVLETIARVPYFAFMSILHMYESFGWWRRADYLKVHFAESWNEMHHL 167

Query: 170 LIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK 229
           LIMEELGGNAWWFDRFLAQHIA+ YYF+T  MY+ISPRMAYHFSECVESHAFETYDKFIK
Sbjct: 168 LIMEELGGNAWWFDRFLAQHIAIFYYFMTALMYLISPRMAYHFSECVESHAFETYDKFIK 227

Query: 230 AQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIGKERVLFLAL 282
            QGE+LKKMPAP VA+ YYTGGDLYLFDEFQT+R+PN+RRP I     +FL +
Sbjct: 228 EQGEELKKMPAPEVAVNYYTGGDLYLFDEFQTSRVPNTRRPTIDNLYDVFLNI 280

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297799790|ref|XP_002867779.1| hypothetical protein ARALYDRAFT_492640 [Arabidopsis lyrata subsp. lyrata] gi|297313615|gb|EFH44038.1| hypothetical protein ARALYDRAFT_492640 [Arabidopsis lyrata subsp. lyrata]

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 183/248 (73%), Positives = 206/248 (83%), Gaps = 4/248 (1%)

Query: 29  KTLRFNPPSSPRSLSRNFCRVQATILQDEEEKVVVEESSPLKNFPNDD--EPPETGSAS- 85
           + L   P SS R L RN  RVQATILQD+EEKVVVEES   + F   +  E P   S+S 
Sbjct: 35  RLLHHRPLSSRRLLFRNIDRVQATILQDDEEKVVVEESFKAETFTGKEPLEEPNMNSSSS 94

Query: 86  -ALEKWVIKFEQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYE 144
            A E W+IK EQ VN+ LT+SVI +LD LYRDR YARFFVLETIARVPYFAF+SVLHMYE
Sbjct: 95  SAFESWIIKLEQGVNVFLTDSVIKILDTLYRDRTYARFFVLETIARVPYFAFMSVLHMYE 154

Query: 145 SFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVI 204
           +FGWWRRADYLKVHFAESWNEMHHLLIMEELGGN+WWFDRFLAQHIA  YYF+TVF+Y++
Sbjct: 155 TFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNSWWFDRFLAQHIATFYYFMTVFLYIL 214

Query: 205 SPRMAYHFSECVESHAFETYDKFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARL 264
           SPRMAYHFSECVESHA+ETYDKF+K  GE+LK MPAP +A+KYYTG DLYLFDEFQT+R 
Sbjct: 215 SPRMAYHFSECVESHAYETYDKFLKTSGEELKNMPAPDIAVKYYTGSDLYLFDEFQTSRA 274

Query: 265 PNSRRPKI 272
           PN+RRP I
Sbjct: 275 PNTRRPVI 282

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388507484|gb|AFK41808.1| unknown [Medicago truncatula]

 Score =  382 bits (982), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 191/293 (65%), Positives = 226/293 (77%), Gaps = 24/293 (8%)

Query: 1   MMTTLSQTVSVFSNKAINLKSVASFNTI--KTLRFNPPSSPRSLSRNFCRVQATILQDEE 58
           M +T   + S+F    +N K  +S N++  + L F PP           R+++++LQD+E
Sbjct: 1   MASTAMFSSSLFPITPLN-KLSSSRNSLIFRPLSFRPP---------LFRIRSSLLQDKE 50

Query: 59  EKVVVEESSPLKNFP---------NDDEPPETGSASALEKWVIKFEQSVNILLTESVIMV 109
           +KV+ + + P K  P         NDD+   T S SA EK VIK EQSVNI LT+SVI +
Sbjct: 51  DKVITQNTFPSKTSPLDSVTENSTNDDD---TSSTSAWEKGVIKVEQSVNIFLTDSVIKI 107

Query: 110 LDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHL 169
           LDALYRDR+YARFFVLETIARVPYFAF+S+LHMYESFGWWRRADYLKVHFAESWNEMHHL
Sbjct: 108 LDALYRDRNYARFFVLETIARVPYFAFMSILHMYESFGWWRRADYLKVHFAESWNEMHHL 167

Query: 170 LIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK 229
           LIMEELGGNAWWFDRFLAQHIA+ YYF+T  MY+ISPRMAYHFSECVESHAFETYDKFIK
Sbjct: 168 LIMEELGGNAWWFDRFLAQHIAIFYYFMTALMYLISPRMAYHFSECVESHAFETYDKFIK 227

Query: 230 AQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIGKERVLFLAL 282
            QGE+LKKMPAP VA+ YYTGGDLYLFDEF+T+R+PN+RRP I     +FL +
Sbjct: 228 EQGEELKKMPAPEVAVNYYTGGDLYLFDEFRTSRVPNTRRPTIDNLYDVFLNI 280

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	294
TAIR|locus:2005514	351	IM "IMMUTANS" [Arabidopsis tha	0.765	0.641	0.733	2.7e-91
TAIR|locus:2173353	353	AOX2 "alternative oxidase 2" [	0.462	0.385	0.314	1.3e-10
TAIR|locus:2089124	329	AOX1C "alternative oxidase 1C"	0.496	0.443	0.25	3.3e-09
TAIR|locus:2028311	318	AOX1D "alternative oxidase 1D"	0.421	0.389	0.293	3.9e-09
TAIR|locus:2087882	325	AOX1B "alternative oxidase 1B"	0.459	0.415	0.297	9.7e-09
TAIR|locus:2087807	354	AOX1A "alternative oxidase 1A"	0.465	0.387	0.273	1.2e-08
UNIPROTKB|Q8W855	345	AOX1c "Alternative oxidase" [O	0.459	0.391	0.276	1.5e-08
UNIPROTKB|Q07185	321	AOX1 "Ubiquinol oxidase 1, mit	0.465	0.426	0.266	2.1e-08
ASPGD|ASPL0000047182	354	AN2099 [Emericella nidulans (t	0.445	0.370	0.294	4.7e-06
DICTYBASE|DDB_G0280819	337	aoxA [Dictyostelium discoideum	0.418	0.364	0.285	2.7e-05

TAIR|locus:2005514 IM "IMMUTANS" [Arabidopsis thaliana (taxid:3702)]

 Score = 910 (325.4 bits), Expect = 2.7e-91, P = 2.7e-91
 Identities = 168/229 (73%), Positives = 189/229 (82%)

Query:    48 RVQATILQDXXXXXXXXXSSPLKNFPNDD--EPPE--TGSASALEKWVIKFEQSVNILLT 103
             RVQATILQD         S   +     +  E P   + S SA E W+IK EQ VN+ LT
Sbjct:    54 RVQATILQDDEEKVVVEESFKAETSTGTEPLEEPNMSSSSTSAFETWIIKLEQGVNVFLT 113

Query:   104 ESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESW 163
             +SVI +LD LYRDR YARFFVLETIARVPYFAF+SVLHMYE+FGWWRRADYLKVHFAESW
Sbjct:   114 DSVIKILDTLYRDRTYARFFVLETIARVPYFAFMSVLHMYETFGWWRRADYLKVHFAESW 173

Query:   164 NEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFET 223
             NEMHHLLIMEELGGN+WWFDRFLAQHIA  YYF+TVF+Y++SPRMAYHFSECVESHA+ET
Sbjct:   174 NEMHHLLIMEELGGNSWWFDRFLAQHIATFYYFMTVFLYILSPRMAYHFSECVESHAYET 233

Query:   224 YDKFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKI 272
             YDKF+KA GE+LK MPAP +A+KYYTGGDLYLFDEFQT+R PN+RRP I
Sbjct:   234 YDKFLKASGEELKNMPAPDIAVKYYTGGDLYLFDEFQTSRTPNTRRPVI 282

GO:0005739 "mitochondrion" evidence=ISM

GO:0005740 "mitochondrial envelope" evidence=IEA

GO:0007585 "respiratory gaseous exchange" evidence=IEA

GO:0009658 "chloroplast organization" evidence=NAS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009657 "plastid organization" evidence=IMP

GO:0009916 "alternative oxidase activity" evidence=ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=RCA

GO:0009266 "response to temperature stimulus" evidence=TAS

GO:0009644 "response to high light intensity" evidence=TAS

GO:0009579 "thylakoid" evidence=IDA

GO:0016117 "carotenoid biosynthetic process" evidence=IMP

TAIR|locus:2173353 AOX2 "alternative oxidase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 169 (64.5 bits), Expect = 1.3e-10, P = 1.3e-10
 Identities = 44/140 (31%), Positives = 72/140 (51%)

Query:   111 DALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLL 170
             D  ++ R   R  +LET+A VP      +LH+     +     ++K    E+ NE  HL+
Sbjct:   167 DIFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSIRKFEHSGGWIKALLEEAENERMHLM 226

Query:   171 IMEELGGNAWWFDRFLAQHIAVAYYFVTVFM-YVISPRMAYHFSECVESHAFETYDKFIK 229
              M EL     W++R L   +    +F + F+ YVISPR+A+     +E  A  +Y +F+K
Sbjct:   227 TMMELV-KPKWYERLLVM-LVQGIFFNSFFVCYVISPRLAHRVVGYLEEEAIHSYTEFLK 284

Query:   230 -AQGEKLKKMPAPAVAIKYY 248
                  K++ + APA+AI Y+
Sbjct:   285 DIDNGKIENVAAPAIAIDYW 304

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005740 "mitochondrial envelope" evidence=IEA;IDA

GO:0007585 "respiratory gaseous exchange" evidence=IEA

GO:0009916 "alternative oxidase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA;TAS

GO:0010230 "alternative respiration" evidence=ISS

TAIR|locus:2089124 AOX1C "alternative oxidase 1C" [Arabidopsis thaliana (taxid:3702)]

 Score = 157 (60.3 bits), Expect = 3.3e-09, P = 3.3e-09
 Identities = 37/148 (25%), Positives = 72/148 (48%)

Query:   102 LTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAE 161
             + +S+    D  ++ R   R  +LET+A VP      ++H      + +   ++K    E
Sbjct:   134 MVKSLRWPTDLFFQRRYGCRAIMLETVAAVPGMVGGMLMHFKSLRRFEQSGGWIKALLEE 193

Query:   162 SWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAF 221
             + NE  HL+   E+     W++R L   +   ++   +  Y+ISP+ A+     +E  A 
Sbjct:   194 AENERMHLMTFMEVA-KPKWYERALVISVQGVFFNAYLIGYIISPKFAHRMVGYLEEEAI 252

Query:   222 ETYDKFIKA-QGEKLKKMPAPAVAIKYY 248
              +Y +F+K      ++ +PAPA+A+ Y+
Sbjct:   253 HSYTEFLKELDNGNIENVPAPAIAVDYW 280

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005740 "mitochondrial envelope" evidence=IEA

GO:0007585 "respiratory gaseous exchange" evidence=IEA

GO:0009916 "alternative oxidase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA;TAS

TAIR|locus:2028311 AOX1D "alternative oxidase 1D" [Arabidopsis thaliana (taxid:3702)]

 Score = 156 (60.0 bits), Expect = 3.9e-09, P = 3.9e-09
 Identities = 37/126 (29%), Positives = 63/126 (50%)

Query:   124 VLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFD 183
             +LET+A VP      +LH+     +     ++K    E+ NE  HL+   EL     W++
Sbjct:   145 LLETVAAVPGMVGGMLLHLKSLRRFEHSGGWIKALLEEAENERMHLMTFIELS-QPKWYE 203

Query:   184 RFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK-AQGEKLKKMPAPA 242
             R +   +   ++      YVISP++A+  +  +E  A  +Y +F+K     K +  PAPA
Sbjct:   204 RAIVFTVQGVFFNAYFLAYVISPKLAHRITGYLEEEAVNSYTEFLKDIDAGKFENSPAPA 263

Query:   243 VAIKYY 248
             +AI Y+
Sbjct:   264 IAIDYW 269

GO:0005739 "mitochondrion" evidence=ISM

GO:0007585 "respiratory gaseous exchange" evidence=IEA

GO:0009916 "alternative oxidase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA;TAS

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2087882 AOX1B "alternative oxidase 1B" [Arabidopsis thaliana (taxid:3702)]

 Score = 153 (58.9 bits), Expect = 9.7e-09, P = 9.7e-09
 Identities = 42/141 (29%), Positives = 71/141 (50%)

Query:   111 DALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLL 170
             D  ++ R   R  +LET+A VP      ++H      + +   ++K    E+ NE  HL+
Sbjct:   139 DLFFQRRYGCRAMMLETVAAVPGMVGGMLVHCKSLRRFEQSGGWIKALLEEAENERMHLM 198

Query:   171 IMEELGGNAWWFDRFLAQHIAV-AYYFVTVFM-YVISPRMAYHFSECVESHAFETYDKFI 228
                E+     W++R L   IAV   +F   F+ Y+ISP+ A+     +E  A  +Y +F+
Sbjct:   199 TFMEVA-KPNWYERALV--IAVQGIFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFL 255

Query:   229 KA-QGEKLKKMPAPAVAIKYY 248
             K      ++ +PAPA+AI Y+
Sbjct:   256 KELDNGNIENVPAPAIAIDYW 276

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005740 "mitochondrial envelope" evidence=IEA

GO:0007585 "respiratory gaseous exchange" evidence=IEA

GO:0009916 "alternative oxidase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA;TAS

TAIR|locus:2087807 AOX1A "alternative oxidase 1A" [Arabidopsis thaliana (taxid:3702)]

 Score = 153 (58.9 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 38/139 (27%), Positives = 68/139 (48%)

Query:   111 DALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLL 170
             D  ++ R   R  +LET+A VP      +LH      + +   ++K    E+ NE  HL+
Sbjct:   168 DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENERMHLM 227

Query:   171 IMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKA 230
                E+     W++R L   +   ++      Y+ISP+ A+     +E  A  +Y +F+K 
Sbjct:   228 TFMEVA-KPKWYERALVITVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKE 286

Query:   231 QGE-KLKKMPAPAVAIKYY 248
               +  ++ +PAPA+AI Y+
Sbjct:   287 LDKGNIENVPAPAIAIDYW 305

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005740 "mitochondrial envelope" evidence=IEA

GO:0007585 "respiratory gaseous exchange" evidence=IEA

GO:0009916 "alternative oxidase activity" evidence=IGI;ISS;IDA

GO:0055114 "oxidation-reduction process" evidence=IEA;TAS

GO:0045333 "cellular respiration" evidence=IDA

GO:0009409 "response to cold" evidence=IMP

GO:0031930 "mitochondria-nucleus signaling pathway" evidence=IEP

UNIPROTKB|Q8W855 AOX1c "Alternative oxidase" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 152 (58.6 bits), Expect = 1.5e-08, P = 1.5e-08
 Identities = 39/141 (27%), Positives = 73/141 (51%)

Query:   111 DALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLL 170
             D  ++ R   R  +LET+A VP      +LH+     +     +++    E+ NE  HL+
Sbjct:   159 DIFFQRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRRFEHSGGWIRALLEEAENERMHLM 218

Query:   171 IMEELGGNAWWFDRFLAQHIAV-AYYFVTVFM-YVISPRMAYHFSECVESHAFETYDKFI 228
                E+     W++R L   +AV   +F   F+ Y++SP++A+     +E  A  +Y +++
Sbjct:   219 TFMEVA-KPRWYERALV--LAVQGVFFNAYFLGYLLSPKLAHRVVGYLEEEAIHSYTEYL 275

Query:   229 K-AQGEKLKKMPAPAVAIKYY 248
             K  +  K++ +PAP +AI Y+
Sbjct:   276 KDIEAGKIENVPAPPIAIDYW 296

GO:0005739 "mitochondrion" evidence=IC

UNIPROTKB|Q07185 AOX1 "Ubiquinol oxidase 1, mitochondrial" [Glycine max (taxid:3847)]

 Score = 150 (57.9 bits), Expect = 2.1e-08, P = 2.1e-08
 Identities = 37/139 (26%), Positives = 66/139 (47%)

Query:   111 DALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLL 170
             D  ++ R   R  +LET+A VP      +LH      +     + K    E+ NE  HL+
Sbjct:   135 DVFFQRRYGCRAMMLETVAAVPGMVAGMLLHCKSLRRFEHSGGWFKALLEEAENERMHLM 194

Query:   171 IMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKA 230
                E+     W++R L   +   ++      Y++SP+ A+     +E  A  +Y +F+K 
Sbjct:   195 TFMEVA-KPKWYERALVITVQGVFFNAYFLGYLLSPKFAHRMFGYLEEEAIHSYTEFLKE 253

Query:   231 QGE-KLKKMPAPAVAIKYY 248
               +  ++ +PAPA+AI Y+
Sbjct:   254 LDKGNIENVPAPAIAIDYW 272

GO:0005515 "protein binding" evidence=IPI

ASPGD|ASPL0000047182 AN2099 [Emericella nidulans (taxid:162425)]

 Score = 131 (51.2 bits), Expect = 4.7e-06, P = 4.7e-06
 Identities = 41/139 (29%), Positives = 70/139 (50%)

Query:   116 DRDYARFFV-LETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEE 174
             ++++ R FV LE++A VP      + H+       R   +++    E++NE  HLL   +
Sbjct:   146 EKEWLRRFVFLESVAGVPGMVGGMLRHLRSLRRMKRDNGWIETLLEEAYNERMHLLTFLK 205

Query:   175 LGGNAWWFDRFLAQHIAVAYYFVTVFM-YVISPRMAYHFSECVESHAFETYDKFIK-AQG 232
             +     WF R +    A   +F   F+ Y+ISPR  + F   +E  A  TY + IK  + 
Sbjct:   206 MA-EPGWFMRLMVLG-AQGVFFNGFFLSYLISPRTCHRFVGYLEEEAVLTYTRAIKDLES 263

Query:   233 EKL---KKMPAPAVAIKYY 248
              +L   +K+ AP +A+KY+
Sbjct:   264 GRLPHWEKLEAPEIAVKYW 282

GO:0005739 "mitochondrion" evidence=IDA

GO:0009916 "alternative oxidase activity" evidence=IEA

GO:0005740 "mitochondrial envelope" evidence=IEA

GO:0007585 "respiratory gaseous exchange" evidence=IEA

GO:0010230 "alternative respiration" evidence=IEA

GO:0034599 "cellular response to oxidative stress" evidence=IEA

DICTYBASE|DDB_G0280819 aoxA [Dictyostelium discoideum (taxid:44689)]

 Score = 124 (48.7 bits), Expect = 2.7e-05, P = 2.7e-05
 Identities = 36/126 (28%), Positives = 61/126 (48%)

Query:   124 VLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFD 183
             VLET+A VP       LH+ ++    +  +++K+   E  NE  HLL   EL       +
Sbjct:   133 VLETVAAVPGLVAGMFLHL-KTLRNMQSNNWIKILMDEMENERMHLLSFMELT-KPTLLE 190

Query:   184 RFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK-AQGEKLKKMPAPA 242
             R +       Y+ + +  YV+SP+ A+ F+  +E  A  TY   ++     K+    AP 
Sbjct:   191 RGMVAVTQAIYWNLFLVFYVLSPKTAHRFTGYLEEQAVVTYTHMLEDIDSGKVPNYKAPQ 250

Query:   243 VAIKYY 248
             +AI+Y+
Sbjct:   251 IAIEYW 256

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009916 "alternative oxidase activity" evidence=IEA

GO:0007585 "respiratory gaseous exchange" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q56X52	AOX4_ARATH	1, ., -, ., -, ., -	0.7586	0.7755	0.6495	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	294
cd01053	168	cd01053, AOX, Alternative oxidase, ferritin-like d	1e-78
pfam01786	214	pfam01786, AOX, Alternative oxidase	1e-65
PLN02478	328	PLN02478, PLN02478, alternative oxidase	1e-11

>gnl|CDD|153112 cd01053, AOX, Alternative oxidase, ferritin-like diiron-binding domain

 Score =  235 bits (602), Expect = 1e-78
 Identities = 67/140 (47%), Positives = 87/140 (62%), Gaps = 2/140 (1%)

Query: 114 YRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIME 173
           Y DR  ARF  LET+ARVP      +LH+Y   G WR   ++K    E+ NE  HLLI E
Sbjct: 1   YEDRWLARFIFLETVARVPGMVAGMLLHLYSLRGMWRDGGWIKTLLEEAENERMHLLIFE 60

Query: 174 ELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGE 233
           ELGG  WWF RF+AQH AV +Y     +Y+ISPR+A+ F   +E  A +TY +F+K   E
Sbjct: 61  ELGGPGWWFRRFVAQHQAV-FYNAYFLLYLISPRLAHRFVGYLEEEAVDTYTEFLKDIEE 119

Query: 234 KLK-KMPAPAVAIKYYTGGD 252
            LK  +PAP +AI+YY  G+
Sbjct: 120 GLKPDLPAPEIAIEYYRLGE 139

Alternative oxidase (AOX) is a mitochondrial ubiquinol oxidase found in plants and some fungi and protists. AOX is a member of the ferritin-like diiron-carboxylate superfamily. The plant mitochondrial protein alternative oxidase catalyses dioxygen dependent ubiquinol oxidation to yield ubiquinone and water. AOX is a cyanide-resistant, salicylhydroxamic acid-sensitive oxidase that transfers electrons from ubiquinol to oxygen, bypassing the cytochrome chain. AOX has been proposed to contain a hydroxo-bridged diiron center within a four-helix bundle and a proximal redox-active tyrosine residue. AOX is proposed to be peripherally associated with the matrix side of the inner mitochondrial membrane. Fungal and protozoan AOXs generally exist as monomers. In plants, AOX is dimeric. Pyruvate is an allosteric activator of plant AOX involved in the reversible inactivation of the enzyme though the formation of an intermolecular disulfide bridge between monomeric subunits. The enzyme is non-proton-motive and does not contribute to the conservation of energy. The heat that dissipates from AOX activity is used in thermogenic plants to volatilize primary amines to attract pollinating insects. Other functions have been proposed: i) that the alternative oxidase allows Krebs-cycle turnover when the energy charge of the cell is high, and ii) that the enzyme protects against oxidative stress. The expression of AOX is induced when plants are exposed to a variety of stresses including chilling, pathogen attack, senescence and fruit ripening. Length = 168

>gnl|CDD|216699 pfam01786, AOX, Alternative oxidase

 Score =  204 bits (520), Expect = 1e-65
 Identities = 50/187 (26%), Positives = 76/187 (40%), Gaps = 9/187 (4%)

Query: 76  DEPPETGSASALEKWVIKFEQSVNILLTESVIMVLD-------ALYRDRDYARFFVLETI 128
               E  +     +        V   L + +    D        +  +R   R   LET+
Sbjct: 3   YTEDELENVKVTHREPKTLGDKVAFFLVKFLRWCFDLVTGYRYEMTEERWLHRAIFLETV 62

Query: 129 ARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQ 188
           A VP      + H+       R   +++    E+ NE  HLL   EL G   WF+RFL  
Sbjct: 63  AGVPGMVGGMLRHLRSLRRLKRDGGWIETLLEEAENERMHLLTFLEL-GKPGWFERFLVL 121

Query: 189 HIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGE-KLKKMPAPAVAIKY 247
                ++     +Y++SPRMA+ F   +E  A  TY  F+K     KL  +PAP +AI Y
Sbjct: 122 LAQGVFFNAFFLLYLLSPRMAHRFVGYLEEEAVVTYTHFLKDIEAGKLPNVPAPEIAIDY 181

Query: 248 YTGGDLY 254
           +   +L 
Sbjct: 182 WRLPELD 188

The alternative oxidase is used as a second terminal oxidase in the mitochondria, electrons are transfered directly from reduced ubiquinol to oxygen forming water. This is not coupled to ATP synthesis and is not inhibited by cyanide, this pathway is a single step process. In rice the transcript levels of the alternative oxidase are increased by low temperature. Length = 214

>gnl|CDD|215265 PLN02478, PLN02478, alternative oxidase

 Score = 63.8 bits (155), Expect = 1e-11
 Identities = 44/147 (29%), Positives = 71/147 (48%), Gaps = 18/147 (12%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHM-----YESFGWWRRADYLKVHFAESWNE 165
           D  ++ R   R  +LET+A VP      +LH+     +E  G W     +K    E+ NE
Sbjct: 142 DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRRFEHSGGW-----IKALLEEAENE 196

Query: 166 MHHLLIMEELGGNAWWFDR---FLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFE 222
             HL+   E+    W+ +R      Q +    YF+    Y+ISP+ A+     +E  A  
Sbjct: 197 RMHLMTFMEVAKPKWY-ERALVIAVQGVFFNAYFLG---YLISPKFAHRIVGYLEEEAIH 252

Query: 223 TYDKFIKAQGE-KLKKMPAPAVAIKYY 248
           +Y +F+K     K++ +PAPA+AI Y+
Sbjct: 253 SYTEFLKDLDAGKIENVPAPAIAIDYW 279

Length = 328

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	294
PLN02478	328	alternative oxidase	100.0
PF01786	207	AOX: Alternative oxidase; InterPro: IPR002680 The	100.0
cd01053	168	AOX Alternative oxidase, ferritin-like diiron-bind	100.0
cd01053	168	AOX Alternative oxidase, ferritin-like diiron-bind	91.5
PLN02478	328	alternative oxidase	90.93
cd01042	165	DMQH Demethoxyubiquinone hydroxylase, ferritin-lik	89.79

>PLN02478 alternative oxidase

Probab=100.00  E-value=4e-77  Score=559.14  Aligned_cols=215  Identities=23%  Similarity=0.331  Sum_probs=201.1

Q ss_pred             EeecCCceeeeccCCCCCCCCCCC-------CCCCCcchHHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccchhhHHHH
Q 022654           53 ILQDEEEKVVVEESSPLKNFPNDD-------EPPETGSASALEKWVIKFEQSVNILLTESVIMVLDALYRDRDYARFFVL  125 (294)
Q Consensus        53 ~~~~~~~~~~~~~~~ph~~~~~~~-------~~P~~~~d~~a~~~v~~~r~~fd~~~t~~~~~~~d~l~~~r~~~R~ifL  125 (294)
                      ++++|+.+-.-.-.+|||+|+.++       ++|++++||+|+++|+.+|+++|+            +|++||++|++||
T Consensus        89 ~~~~dg~~~~w~~~~p~~~y~~~~~~~~~~H~~P~~~~Dk~A~~~Vk~lR~~~D~------------~f~~R~~~R~ifL  156 (328)
T PLN02478         89 ITKEDGTEWKWNCFRPWETYKADLSIDLKKHHVPKTLLDKIAYWTVKSLRVPTDL------------FFQRRYGCRAMML  156 (328)
T ss_pred             cccCCCCCCCccCcCCCccccHhhhchhhcCCCCCchHHHHHHHHHHHHHHHHHH------------HhhcchhhHHHHH
Confidence            444555443334788999999877       899999999999999999999987            4799999999999


Q ss_pred             HHhhcCchhHHHHHHHHHHhcCcccccchHHHHHHHHHhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHhhc
Q 022654          126 ETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVIS  205 (294)
Q Consensus       126 ETVA~VPGmv~~~~rHL~s~~~~~Rd~~~I~tlleEAeNErmHLltf~~l~~p~~~~~R~l~~~~q~~fy~~f~~~Ylvs  205 (294)
                      ||||||||||+||++||+|+|+|+||+|||++|||||||||||||||+++++|+ |++|++++++|++|||+||++|++|
T Consensus       157 ETVA~VPGmV~gmlrHL~SLRr~krd~gWIrtLLeEAeNERMHLLtf~~l~~p~-w~eR~lv~~aQgvf~~~ff~~YLiS  235 (328)
T PLN02478        157 ETVAAVPGMVGGMLLHLKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPK-WYERALVIAVQGVFFNAYFLGYLIS  235 (328)
T ss_pred             HHHhcCchHHHHHHHHHHHHhhhhccCchHHHHHHHHHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999999 8999999999999999999999999


Q ss_pred             ccchhhhhhhhhhhHHHHHHHHHHhhc-ccccCCCCCHHHHhhccC-CCccchhhhhhccCCCC-CCCCCCCcceeeE
Q 022654          206 PRMAYHFSECVESHAFETYDKFIKAQG-EKLKKMPAPAVAIKYYTG-GDLYLFDEFQTARLPNS-RRPKIGKERVLFL  280 (294)
Q Consensus       206 Pr~ahRfvgyLEEEAV~TYT~~L~ei~-g~~~~~pAP~iAi~YW~l-~D~~l~De~~~~R~de~-rrp~~~~l~Dvf~  280 (294)
                      ||+|||||||||||||+|||+||+||| |+++|+|||+||++||++ +|++|+|++..+|+||. ||..+.++-|+.+
T Consensus       236 Pr~aHRfvGYLEEEAV~TYT~~L~eid~G~l~n~pAP~IAi~YW~LP~~atLrDVi~~IRaDEa~HRdVNH~~sd~~~  313 (328)
T PLN02478        236 PKFAHRIVGYLEEEAIHSYTEFLKDLDAGKIENVPAPAIAIDYWRLPADATLRDVVTVVRADEAHHRDVNHFASDIHY  313 (328)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccCCCCChHHHHHhCCCCCCcHHHHHHHHHhhhhhhhccCcchhhhhh
Confidence            999999999999999999999999997 999999999999999999 58999999999999995 8999999988754

>PF01786 AOX: Alternative oxidase; InterPro: IPR002680 The alternative oxidase is used as a second terminal oxidase in the mitochondria, electrons are transferred directly from reduced ubiquinol to oxygen forming water []

Probab=100.00  E-value=2.3e-73  Score=511.98  Aligned_cols=195  Identities=32%  Similarity=0.447  Sum_probs=186.2

Q ss_pred             CCCCCCC--------CCCCCcchHHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccchhhHHHHHHhhcCchhHHHHHHH
Q 022654           70 KNFPNDD--------EPPETGSASALEKWVIKFEQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLH  141 (294)
Q Consensus        70 ~~~~~~~--------~~P~~~~d~~a~~~v~~~r~~fd~~~t~~~~~~~d~l~~~r~~~R~ifLETVA~VPGmv~~~~rH  141 (294)
                      |+|++++        ++|++++|++|+..|+.+|+.+|+            +|++||++|++||||||||||||+||++|
T Consensus         1 ~~~~~~~~~~v~~~h~~p~~~~d~~A~~~v~~lr~~~D~------------~~~~r~~~R~~~LEtVA~VPg~v~~~~~H   68 (207)
T PF01786_consen    1 PIYTEEELESVQVTHREPKTFSDRVAYGIVKFLRWFFDL------------LFEKRWLHRFIFLETVAGVPGMVGGMVRH   68 (207)
T ss_pred             CCCCHHHHhhcccccCCCCcHHHHHHHHHHHHHHHHHHH------------hccccchhheeeeeecccCChHHHHHHHH
Confidence            7888776        899999999999999998888876            88999999999999999999999999999


Q ss_pred             HHHhcCcccccchHHHHHHHHHhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhhhhHH
Q 022654          142 MYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAF  221 (294)
Q Consensus       142 L~s~~~~~Rd~~~I~tlleEAeNErmHLltf~~l~~p~~~~~R~l~~~~q~~fy~~f~~~YlvsPr~ahRfvgyLEEEAV  221 (294)
                      |+|+++|+||+|||++|+|||||||||||||++|++|+ |++|++++++|++|||+|+++|++|||+|||||||||||||
T Consensus        69 l~slr~~~rd~g~I~~lleEaeNErmHLli~~~l~~p~-~~~R~lv~~~q~vf~~~~~~~Yl~sPr~ahrfvgylEeeAv  147 (207)
T PF01786_consen   69 LRSLRRMKRDGGWIKTLLEEAENERMHLLIFEELGKPS-WFDRFLVLHAQGVFYNIFFLLYLVSPRTAHRFVGYLEEEAV  147 (207)
T ss_pred             HHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999 89999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhc-ccccCCCCCHHHHhhccCC--CccchhhhhhccCCCC-CCCCCCCcce
Q 022654          222 ETYDKFIKAQG-EKLKKMPAPAVAIKYYTGG--DLYLFDEFQTARLPNS-RRPKIGKERV  277 (294)
Q Consensus       222 ~TYT~~L~ei~-g~~~~~pAP~iAi~YW~l~--D~~l~De~~~~R~de~-rrp~~~~l~D  277 (294)
                      +|||+||+||+ |+++++|||+||++||+++  |++|+|++.++|+||. +|..+.++-|
T Consensus       148 ~tYt~~l~di~~g~l~~~paP~iAi~Yw~l~~~~atlrDvi~~IRaDEa~Hr~vNH~~a~  207 (207)
T PF01786_consen  148 HTYTEFLEDIDEGKLPNMPAPEIAIDYWGLPELDATLRDVILAIRADEAEHRDVNHTLAD  207 (207)
T ss_pred             HHHHHHHHHcccCCCCCCCCCHHHHHHhCCCccCchHHHHHHHHHhhHHHHHHhhhhhcC
Confidence            99999999998 8999999999999999995  7999999999999996 7788777655

This is not coupled to ATP synthesis and is not inhibited by cyanide, this pathway is a single step process []. In Oryza sativa (Rice) the transcript levels of the alternative oxidase are increased by low temperature []. It has been predicted to contain a coupled diiron centre on the basis of a conserved sequence motif consisting of the proposed iron ligands, four Glu and two His residues []. The EPR study of Arabidopsis thaliana (Mouse-ear cress) alternative oxidase AOX1a shows that the enzyme contains a hydroxo-bridged mixed-valent Fe(II)/Fe(III) binuclear iron centre []. A catalytic cycle has been proposed that involves diiron centre and at least one transient protein-derived radical, most probably an invariant Tyr residue [].; GO: 0007585 respiratory gaseous exchange, 0055114 oxidation-reduction process, 0005740 mitochondrial envelope

>cd01053 AOX Alternative oxidase, ferritin-like diiron-binding domain

Probab=100.00  E-value=4.9e-70  Score=476.92  Aligned_cols=163  Identities=37%  Similarity=0.611  Sum_probs=153.8

Q ss_pred             ccccchhhHHHHHHhhcCchhHHHHHHHHHHhcCcccccchHHHHHHHHHhHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Q 022654          114 YRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVA  193 (294)
Q Consensus       114 ~~~r~~~R~ifLETVA~VPGmv~~~~rHL~s~~~~~Rd~~~I~tlleEAeNErmHLltf~~l~~p~~~~~R~l~~~~q~~  193 (294)
                      |++||++||+||||||||||||++|++||+|+||||||+||||+|||||||||||||||++|+||+ |++|.++...|++
T Consensus         1 ~~~r~~~R~~~LEtVA~vPgmv~~~~~HL~slr~~~rd~~wi~~lleEaeNErmHLltf~~l~~p~-~~~r~~v~~~q~v   79 (168)
T cd01053           1 YEDRWLARFIFLETVARVPGMVAGMLLHLYSLRGMWRDGGWIKTLLEEAENERMHLLIFEELGGPG-WWFRRFVAQHQAV   79 (168)
T ss_pred             CCCcceehhhhhhHhccCcHHHHHHHHHHHHHhCCcccCCHHHHHHHHHHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHH
Confidence            578999999999999999999999999999999999999999999999999999999999999999 6777777888889


Q ss_pred             HHHHHHHHHhhcccchhhhhhhhhhhHHHHHHHHHHhhc-ccccCCCCCHHHHhhccC-CCccchhhhhhccCCCC-CCC
Q 022654          194 YYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQG-EKLKKMPAPAVAIKYYTG-GDLYLFDEFQTARLPNS-RRP  270 (294)
Q Consensus       194 fy~~f~~~YlvsPr~ahRfvgyLEEEAV~TYT~~L~ei~-g~~~~~pAP~iAi~YW~l-~D~~l~De~~~~R~de~-rrp  270 (294)
                      |||+|+++|++|||+|||||||||||||+|||+||+|+| |+++++|||+||++||++ +|++|+|++.++|+||. ||.
T Consensus        80 fy~~~~~~YlisPr~ahrfvgylEEeAV~TYt~~L~~id~g~~~~~paP~iAi~Yw~l~~~atl~Dvi~~IR~DEa~Hr~  159 (168)
T cd01053          80 FYNAYFLLYLISPRLAHRFVGYLEEEAVDTYTEFLKDIEEGLKPDLPAPEIAIEYYRLGEDATLYDVFVAIRADEAEHRK  159 (168)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhccccCCCCCCHHHHHHhCCCCCCcHHHHHHHHHhhHHhHHH
Confidence            999999999999999999999999999999999999998 788899999999999999 48999999999999995 777


Q ss_pred             CCCCcce
Q 022654          271 KIGKERV  277 (294)
Q Consensus       271 ~~~~l~D  277 (294)
                      .+.++.|
T Consensus       160 vnh~~~~  166 (168)
T cd01053         160 VNHACAD  166 (168)
T ss_pred             HHHHhhc
Confidence            7777655

Alternative oxidase (AOX) is a mitochondrial ubiquinol oxidase found in plants and some fungi and protists. AOX is a member of the ferritin-like diiron-carboxylate superfamily. The plant mitochondrial protein alternative oxidase catalyses dioxygen dependent ubiquinol oxidation to yield ubiquinone and water. AOX is a cyanide-resistant, salicylhydroxamic acid-sensitive oxidase that transfers electrons from ubiquinol to oxygen, bypassing the cytochrome chain. AOX has been proposed to contain a hydroxo-bridged diiron center within a four-helix bundle and a proximal redox-active tyrosine residue. AOX is proposed to be peripherally associated with the matrix side of the inner mitochondrial membrane. Fungal and protozoan AOXs generally exist as monomers. In plants, AOX is dimeric. Pyruvate is an allosteric activator of plant AOX involved in the reversible inactivation of the enzyme though the formation of an intermolecular

>cd01053 AOX Alternative oxidase, ferritin-like diiron-binding domain

Probab=91.50  E-value=0.026  Score=50.53  Aligned_cols=20  Identities=15%  Similarity=0.056  Sum_probs=18.3

Q ss_pred             CCCCCCCcceeeEEeecccc
Q 022654          268 RRPKIGKERVLFLALPIRSY  287 (294)
Q Consensus       268 rrp~~~~l~Dvf~~ir~~~~  287 (294)
                      +.|+++||||||++||+||-
T Consensus       136 ~l~~~atl~Dvi~~IR~DEa  155 (168)
T cd01053         136 RLGEDATLYDVFVAIRADEA  155 (168)
T ss_pred             CCCCCCcHHHHHHHHHhhHH
Confidence            57899999999999999984

Alternative oxidase (AOX) is a mitochondrial ubiquinol oxidase found in plants and some fungi and protists. AOX is a member of the ferritin-like diiron-carboxylate superfamily. The plant mitochondrial protein alternative oxidase catalyses dioxygen dependent ubiquinol oxidation to yield ubiquinone and water. AOX is a cyanide-resistant, salicylhydroxamic acid-sensitive oxidase that transfers electrons from ubiquinol to oxygen, bypassing the cytochrome chain. AOX has been proposed to contain a hydroxo-bridged diiron center within a four-helix bundle and a proximal redox-active tyrosine residue. AOX is proposed to be peripherally associated with the matrix side of the inner mitochondrial membrane. Fungal and protozoan AOXs generally exist as monomers. In plants, AOX is dimeric. Pyruvate is an allosteric activator of plant AOX involved in the reversible inactivation of the enzyme though the formation of an intermolecular

>PLN02478 alternative oxidase

Probab=90.93  E-value=0.038  Score=53.81  Aligned_cols=20  Identities=15%  Similarity=0.069  Sum_probs=18.8

Q ss_pred             CCCCCCCcceeeEEeecccc
Q 022654          268 RRPKIGKERVLFLALPIRSY  287 (294)
Q Consensus       268 rrp~~~~l~Dvf~~ir~~~~  287 (294)
                      ++|+++||+|||++||+||-
T Consensus       280 ~LP~~atLrDVi~~IRaDEa  299 (328)
T PLN02478        280 RLPADATLRDVVTVVRADEA  299 (328)
T ss_pred             CCCCCCcHHHHHHHHHhhhh
Confidence            79999999999999999984

>cd01042 DMQH Demethoxyubiquinone hydroxylase, ferritin-like diiron-binding domain

Probab=89.79  E-value=1.6  Score=38.97  Aligned_cols=97  Identities=16%  Similarity=0.115  Sum_probs=67.6

Q ss_pred             cccchHHHHHHHHHhHHHHHHHHHHh-----cCCchHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhhhhHHHHH
Q 022654          150 RRADYLKVHFAESWNEMHHLLIMEEL-----GGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETY  224 (294)
Q Consensus       150 Rd~~~I~tlleEAeNErmHLltf~~l-----~~p~~~~~R~l~~~~q~~fy~~f~~~YlvsPr~ahRfvgyLEEEAV~TY  224 (294)
                      ++...-+.+-+=++.|.-||-+|.++     ..|+ +   +....-.+.|... ++.=++.++.++-|+.-+|+-...-|
T Consensus        27 ~~~~~~~~l~~~~~~E~~Hl~~f~~~i~~~~~rps-~---l~PlW~~~gf~lG-~~tal~G~~~a~~~~~avE~~V~~Hy  101 (165)
T cd01042          27 RDPAVRPLIKEMLDEEKDHLAWFEELLPELGVRPS-L---LLPLWYVAGFALG-ALTALLGKKAAMACTAAVETVVEEHY  101 (165)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc-h---HHHHHHHHHHHHH-HHHHhhChHHHHHHHHHHHHHHHHHH
Confidence            44444455556678899999988876     2566 2   2222222344433 45667799999999999999999999


Q ss_pred             HHHHHhhcccccCCCCCHHHHhhccCCCccchhhhhhccCCCC
Q 022654          225 DKFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNS  267 (294)
Q Consensus       225 T~~L~ei~g~~~~~pAP~iAi~YW~l~D~~l~De~~~~R~de~  267 (294)
                      ..-|++++..                +|.-+.+.++..|.||.
T Consensus       102 ~~ql~~L~~~----------------~d~~l~~~l~~~r~DE~  128 (165)
T cd01042         102 NDQLRELPAQ----------------PDKELRAIIEQFRDDEL  128 (165)
T ss_pred             HHHHHHhhcc----------------CCHHHHHHHHHHHHHHH
Confidence            9999998632                35666777777777774

Demethoxyubiquinone hydroxylases (DMQH) are members of the ferritin-like, diiron-carboxylate family which are present in eukaryotes (the CLK-1/CAT5 family) and prokaryotes (the Coq7 family). DMQH participates in one of the last steps of ubiquinone biosysnthesis and is responsible for DMQ hydroxylation, resulting in the formation of hydroxyubiquinone, a precursor of ubiquinone. CLK-1 is a mitochondrial inner membrane protein and Coq7 is a proposed interfacial integral membrane protein. Mutations in the Caenorhabditis elegans gene clk-1 affect biological timing and extend longevity. The conserved residues of a diiron center are present in this domain.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	294
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.3 bits (114), Expect = 2e-06
 Identities = 34/304 (11%), Positives = 85/304 (27%), Gaps = 82/304 (26%)

Query: 4   TLSQTVSVFSNKAINLKSVASFNTIKTLRFNPPS----SPRSLS------RNF-CRVQAT 52
           T  +  S+   K ++ +        + L   P      +PR LS      R+        
Sbjct: 299 TPDEVKSLLL-KYLDCR-------PQDL---PREVLTTNPRRLSIIAESIRDGLATWD-N 346

Query: 53  ILQDEEEKVVVEESSPLKNFPNDDEPPETGSASALEKWVIKFEQSVNILLTESVIMVL-- 110
                 +K+    ++ +++  N  EP E       ++  + F  S +I     ++ ++  
Sbjct: 347 WKHVNCDKL----TTIIESSLNVLEPAEY--RKMFDRLSV-FPPSAHI--PTILLSLIWF 397

Query: 111 DALYRD-RDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHF-AESWNEMHH 168
           D +  D           ++           +             YL++    E+   +H 
Sbjct: 398 DVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI----------YLELKVKLENEYALHR 447

Query: 169 LLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFI 228
            ++        +  D  +  ++    YF   + ++      +H                 
Sbjct: 448 SIVDHYNIPKTFDSDDLIPPYLD--QYF---YSHI-----GHHLKNI------------- 484

Query: 229 KAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIGKERVLFLALPIRSYS 288
               E++                 ++L   F   ++ +          +L     ++ Y 
Sbjct: 485 -EHPERMTLFR------------MVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYK 531

Query: 289 SSIQ 292
             I 
Sbjct: 532 PYIC 535

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00