Citrus Sinensis ID: 022660

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290----
Protein Sequence
MKSAVAITSKIHLNLNLRRNHLYSPLSRSIFLGKAKPVFQSPPLIRTHSSNPNPNPIMASSSKPEQARAPPALPLPTPPVAKFKVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQVLPHSPFVFF
Secondary Structure (PSIPRED)
ccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccHHHHHHHHHHHHHHHHHccccEEEcccccccccccccccccccccccccccHHHHHHHHHHHHHcccEEEEccEEcccccEEEEEEEEEcccccEEEEcccccccccccccccEEEcccccccccccEEEEcccEEEEEEEEEccccHHHHHHHHHccccEEEEcccccccccHHHHHHHHHHHHHHcccEEEcccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEccccccccccccccccccccccHcccccccccccccccccccccccccccccccccccHccccccccccccccccEEEEEEEEEccccHHHHHHHHHHHHHHHHHccccEEEEcccccccccccccHHHHHcccccccccHHHHHHHHHHHHccEEEEEccccccccccEEEEEEEEcccccEEEEEEEEEEEEEEccccEEEEEcccccccccEEEEEccccEEEEEEEEcccHHHHHHHHHHcccEEEEEEccccccccHHHHHHHHHHHHHHccEEEEEcHHcc
Coil and Loop (DISEMBL)
MKSAVAITSKIHLNlnlrrnhlysplsrsiflgkakpvfqspplirthssnpnpnpimassskpeqarappalplptppvakfkvglcqlsvtaDKERNIAHARRAIEEAAEKGAKLillpeiwnspyshdsfpvyaedidaggdaspstAMLSEVARLLKITIVggsipersgdrlyntccvfgsdgklIAKHRKihlfdidipgkitfiesksltagetptivdtdvgrigigiCYDIRFQELAMIYGARGahlicypgafnmttgpLHWELLQRAratdnqvlphspfvff
Flexible Loop (DISEMBL)
MKSAVAITSkihlnlnlrrNHLYSPLSRSIFLGKAKPVFQSPPLIRTHSSNPNPNPIMASSSKPEQARAPPALPLPTPPVAKFKVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVggsipersgdrlYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIesksltagetptivdtdvgriGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQVLPHSPFVFF
Low Complexity Region (SEG)
MKSAVAITSKIhlnlnlrrnhlYSPLSRSIFLGKAKPVFQSPPLIRTHSSNPNPNPIMASSSKPEQARappalplptppVAKFKVGLCQLSVTADKErniaharraieeaaekgaklillPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQVLPHSPFVFF
Disordered region (IsUnstruct)
*****AITSKIHLNLNLRRNHLYSPLSRSIFLGKAKPV*****************************************VAKFKVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDA********AMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATD************
Disordered Region (DISOPRED)
*********KIHLNLNLRRNHLYSPLSRSIFLGKAKPVF*******************************************FKVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAE*****GDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQVLPHSPFVFF
Disordered Region (DISEMBL)
MKSAVAITSKIHLNLNLRRNHLYSPLSRSIFLGKAKPVFQSPPLIRTHSSNPNPNPI*************PALPLPTPPVAKFKVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQVLPHSPFVFF
Disordered Region (DISPRO)
*KSAVAITSKIHLNLNLRRNHLYSPLSRSIFLGKAKPVFQSPPLIRTHS*********************PALPLPTPPVAKFKVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQVLPHSPFVFF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKSAVAITSKIHLNLNLRRNHLYSPLSRSIFLGKAKPVFQSPPLIRTHSSNPNPNPIMASSSKPEQARAPPALPLPTPPVAKFKVGLCQLSVxxxxxxxxxxxxxxxxxxxxxGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQVLPHSPFVFF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	294	2.2.26 [Sep-21-2011]
Q497B0	276	Omega-amidase NIT2 OS=Rat	yes	no	0.683	0.728	0.572	4e-64
Q6IR61	276	Omega-amidase NIT2-A OS=X	N/A	no	0.683	0.728	0.567	8e-64
Q9NQR4	276	Omega-amidase NIT2 OS=Hom	yes	no	0.683	0.728	0.563	2e-63
Q2T9R6	276	Omega-amidase NIT2 OS=Bos	yes	no	0.683	0.728	0.563	2e-63
Q9JHW2	276	Omega-amidase NIT2 OS=Mus	yes	no	0.683	0.728	0.558	5e-63
Q6INI7	276	Omega-amidase NIT2-B OS=X	N/A	no	0.683	0.728	0.553	6e-63
Q28IE5	276	Omega-amidase NIT2 OS=Xen	yes	no	0.683	0.728	0.553	1e-62
Q5R4L6	275	Omega-amidase NIT2 OS=Pon	yes	no	0.680	0.727	0.563	6e-62
Q4VBV9	277	Omega-amidase NIT2 OS=Dan	yes	no	0.683	0.725	0.543	1e-61
Q10166	322	UPF0012 hydrolase C26A3.1	yes	no	0.683	0.624	0.558	5e-61

>sp|Q497B0|NIT2_RAT Omega-amidase NIT2 OS=Rattus norvegicus GN=Nit2 PE=1 SV=1

 Score =  244 bits (624), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 118/206 (57%), Positives = 146/206 (70%), Gaps = 5/206 (2%)

Query: 80  VAKFKVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAED 139
           ++ F++ L QL V++ K  NI  A   + EAA++GA ++ LPE +NSPY  + FP YAE 
Sbjct: 1   MSTFRLALIQLQVSSIKSDNITRACSLVREAAKQGANIVSLPECFNSPYGTNYFPEYAEK 60

Query: 140 IDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHL 199
           I        ST  LSEVA+   I ++GGSIPE    +LYNTC VFG DG L+ KHRKIHL
Sbjct: 61  I-----PGESTKKLSEVAKENSIYLIGGSIPEEDDGKLYNTCAVFGPDGNLLVKHRKIHL 115

Query: 200 FDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICY 259
           FDID+PGKITF ESK+L+ G++ +  DT   R+G+GICYD+RF ELA IY  RG  L+ Y
Sbjct: 116 FDIDVPGKITFQESKTLSPGDSFSTFDTPYCRVGLGICYDMRFAELAQIYARRGCQLLVY 175

Query: 260 PGAFNMTTGPLHWELLQRARATDNQV 285
           PGAFNMTTGP HWELLQRARA DNQV
Sbjct: 176 PGAFNMTTGPAHWELLQRARAVDNQV 201

Has a omega-amidase activity. The role of omega-amidase is to remove potentially toxic intermediates by converting alpha-ketoglutaramate and alpha-ketosuccinamate to biologically useful alpha-ketoglutarate and oxaloacetate, respectively.
Rattus norvegicus (taxid: 10116)
EC: 3EC: .EC: 5EC: .EC: 1EC: .EC: 3

>sp|Q6IR61|NIT2A_XENLA Omega-amidase NIT2-A OS=Xenopus laevis GN=nit2a PE=2 SV=1

 Score =  244 bits (622), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 117/206 (56%), Positives = 148/206 (71%), Gaps = 5/206 (2%)

Query: 80  VAKFKVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAED 139
           +AKFK+ L Q  V+  K  N+  A + I+EAA+KGA+++ LPE +NSPY    FP YAE 
Sbjct: 1   MAKFKLSLVQFLVSPVKSDNLNRACKLIKEAAQKGAQIVALPECFNSPYGTTYFPEYAEK 60

Query: 140 IDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHL 199
           I        ST +LS+VA+   I ++GGSIPE    +LYNTC VFG DG L+ KHRKIHL
Sbjct: 61  I-----PGESTELLSQVAKECGIYLIGGSIPEEDCGKLYNTCAVFGPDGTLLVKHRKIHL 115

Query: 200 FDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICY 259
           FDID+PGKI F ES++L+ G++ ++ DT   ++G+GICYDIRF ELA IY  +G  L+ Y
Sbjct: 116 FDIDVPGKIRFQESETLSPGDSFSVFDTPYCKVGVGICYDIRFAELAQIYANKGCQLLVY 175

Query: 260 PGAFNMTTGPLHWELLQRARATDNQV 285
           PGAFNMTTGP HWELLQRARA DNQV
Sbjct: 176 PGAFNMTTGPAHWELLQRARALDNQV 201

Has a omega-amidase activity. The role of omega-amidase is to remove potentially toxic intermediates by converting alpha-ketoglutaramate and alpha-ketosuccinamate to biologically useful alpha-ketoglutarate and oxaloacetate, respectively.

Xenopus laevis (taxid: 8355)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

>sp|Q9NQR4|NIT2_HUMAN Omega-amidase NIT2 OS=Homo sapiens GN=NIT2 PE=1 SV=1

 Score =  243 bits (619), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 116/206 (56%), Positives = 145/206 (70%), Gaps = 5/206 (2%)

Query: 80  VAKFKVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAED 139
           +  F++ L QL +++ K  N+  A   I EAA +GAK++ LPE +NSPY    FP YAE 
Sbjct: 1   MTSFRLALIQLQISSIKSDNVTRACSFIREAATQGAKIVSLPECFNSPYGAKYFPEYAEK 60

Query: 140 IDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHL 199
           I        ST  LSEVA+   I ++GGSIPE    +LYNTC VFG DG L+AK+RKIHL
Sbjct: 61  I-----PGESTQKLSEVAKECSIYLIGGSIPEEDAGKLYNTCAVFGPDGTLLAKYRKIHL 115

Query: 200 FDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICY 259
           FDID+PGKITF ESK+L+ G++ +  DT   R+G+GICYD+RF ELA IY  RG  L+ Y
Sbjct: 116 FDIDVPGKITFQESKTLSPGDSFSTFDTPYCRVGLGICYDMRFAELAQIYAQRGCQLLVY 175

Query: 260 PGAFNMTTGPLHWELLQRARATDNQV 285
           PGAFN+TTGP HWELLQR+RA DNQV
Sbjct: 176 PGAFNLTTGPAHWELLQRSRAVDNQV 201

Has a omega-amidase activity. The role of omega-amidase is to remove potentially toxic intermediates by converting alpha-ketoglutaramate and alpha-ketosuccinamate to biologically useful alpha-ketoglutarate and oxaloacetate, respectively. Overexpression decreases the colony-forming capacity of cultured cells by arresting cells in the G2 phase of the cell cycle.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

>sp|Q2T9R6|NIT2_BOVIN Omega-amidase NIT2 OS=Bos taurus GN=NIT2 PE=2 SV=1

 Score =  243 bits (619), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 116/206 (56%), Positives = 149/206 (72%), Gaps = 5/206 (2%)

Query: 80  VAKFKVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAED 139
           +A F++ L QL V++ K  N+  A   I EA+++GA+++ LPE +NSPY    FP YAE 
Sbjct: 1   MATFRLALIQLQVSSIKSENLTRACGLIREASKQGAQIVSLPECFNSPYGTKYFPDYAEK 60

Query: 140 IDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHL 199
           I   GD   ST  LSEVA+   + ++GGSIPE+   +LYNTC VFG DG L+ KHRK+HL
Sbjct: 61  IP--GD---STQKLSEVAKECSMYVIGGSIPEKDAGKLYNTCAVFGPDGTLLVKHRKLHL 115

Query: 200 FDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICY 259
           FDID+PGKITF ES++L+ G++ ++ DT   R+G+GICYDIRF ELA IY  RG  L+ Y
Sbjct: 116 FDIDVPGKITFQESETLSPGDSFSLFDTPYCRVGLGICYDIRFAELAQIYAQRGCQLLVY 175

Query: 260 PGAFNMTTGPLHWELLQRARATDNQV 285
           PGAFN+TTGP HWELLQR RA DNQV
Sbjct: 176 PGAFNLTTGPAHWELLQRGRAVDNQV 201

Has a omega-amidase activity. The role of omega-amidase is to remove potentially toxic intermediates by converting alpha-ketoglutaramate and alpha-ketosuccinamate to biologically useful alpha-ketoglutarate and oxaloacetate, respectively.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

>sp|Q9JHW2|NIT2_MOUSE Omega-amidase NIT2 OS=Mus musculus GN=Nit2 PE=1 SV=1

 Score =  241 bits (615), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 115/206 (55%), Positives = 145/206 (70%), Gaps = 5/206 (2%)

Query: 80  VAKFKVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAED 139
           ++ F++ L QL V++ K  N+  A   + EAA++GA ++ LPE +NSPY    FP YAE 
Sbjct: 1   MSTFRLALIQLQVSSIKSDNLTRACSLVREAAKQGANIVSLPECFNSPYGTTYFPDYAEK 60

Query: 140 IDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHL 199
           I        ST  LSEVA+   I ++GGSIPE    +LYNTC VFG DG L+ KHRKIHL
Sbjct: 61  I-----PGESTQKLSEVAKESSIYLIGGSIPEEDAGKLYNTCSVFGPDGSLLVKHRKIHL 115

Query: 200 FDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICY 259
           FDID+PGKITF ESK+L+ G++ +  DT   ++G+GICYD+RF ELA IY  RG  L+ Y
Sbjct: 116 FDIDVPGKITFQESKTLSPGDSFSTFDTPYCKVGLGICYDMRFAELAQIYAQRGCQLLVY 175

Query: 260 PGAFNMTTGPLHWELLQRARATDNQV 285
           PGAFN+TTGP HWELLQRARA DNQV
Sbjct: 176 PGAFNLTTGPAHWELLQRARAVDNQV 201

Has a omega-amidase activity. The role of omega-amidase is to remove potentially toxic intermediates by converting alpha-ketoglutaramate and alpha-ketosuccinamate to biologically useful alpha-ketoglutarate and oxaloacetate, respectively.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

>sp|Q6INI7|NIT2B_XENLA Omega-amidase NIT2-B OS=Xenopus laevis GN=nit2b PE=2 SV=1

 Score =  241 bits (614), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 114/206 (55%), Positives = 147/206 (71%), Gaps = 5/206 (2%)

Query: 80  VAKFKVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAED 139
           +AKF++ L Q  V+  K  N+  A + I+EAA+KGA+++ LPE +NSPY    FP YAE 
Sbjct: 1   MAKFRLSLVQFLVSPVKSDNLNKACKLIKEAAQKGAQIVALPECFNSPYGTKYFPEYAEK 60

Query: 140 IDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHL 199
           I        ST +LS+VA+   I ++GGSIPE    + YNTC VFG DG L+ KHRKIHL
Sbjct: 61  I-----PGESTELLSQVAKECGIYLIGGSIPEEDSGKFYNTCAVFGPDGTLLVKHRKIHL 115

Query: 200 FDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICY 259
           FDID+PGKI F ES++L+ G++ ++ DT   ++G+GICYD+RF ELA IY  +G  L+ Y
Sbjct: 116 FDIDVPGKIRFQESETLSPGDSFSVFDTPYCKVGVGICYDMRFAELAQIYANKGCQLLVY 175

Query: 260 PGAFNMTTGPLHWELLQRARATDNQV 285
           PGAFNMTTGP HWELLQRARA DNQV
Sbjct: 176 PGAFNMTTGPAHWELLQRARALDNQV 201

Has a omega-amidase activity. The role of omega-amidase is to remove potentially toxic intermediates by converting alpha-ketoglutaramate and alpha-ketosuccinamate to biologically useful alpha-ketoglutarate and oxaloacetate, respectively.

Xenopus laevis (taxid: 8355)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

>sp|Q28IE5|NIT2_XENTR Omega-amidase NIT2 OS=Xenopus tropicalis GN=nit2 PE=2 SV=1

 Score =  240 bits (612), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 114/206 (55%), Positives = 147/206 (71%), Gaps = 5/206 (2%)

Query: 80  VAKFKVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAED 139
           +AKF++ L Q  V+  K  N+  A + I+EAA+KGA+++ LPE +NSPY    FP YAE 
Sbjct: 1   MAKFRLSLVQFLVSPVKSENLNRACKLIKEAAQKGAQIVALPECFNSPYGTKYFPEYAEK 60

Query: 140 IDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHL 199
           I        ST  LS+VA+   I ++GGSIPE    +LYNTC VFG DG L+ KHRKIHL
Sbjct: 61  IPG-----ESTERLSQVAKECGIYLIGGSIPEEDSGKLYNTCAVFGPDGTLLVKHRKIHL 115

Query: 200 FDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICY 259
           FDID+PGKI F ES++L+ G++ ++ +T   ++G+GICYDIRF ELA +Y  +G  L+ Y
Sbjct: 116 FDIDVPGKIRFQESETLSPGDSFSVFETPYCKVGVGICYDIRFAELAQLYSKKGCQLLVY 175

Query: 260 PGAFNMTTGPLHWELLQRARATDNQV 285
           PGAFNMTTGP HWELLQRARA DNQV
Sbjct: 176 PGAFNMTTGPAHWELLQRARALDNQV 201

Has a omega-amidase activity. The role of omega-amidase is to remove potentially toxic intermediates by converting alpha-ketoglutaramate and alpha-ketosuccinamate to biologically useful alpha-ketoglutarate and oxaloacetate, respectively.

Xenopus tropicalis (taxid: 8364)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

>sp|Q5R4L6|NIT2_PONAB Omega-amidase NIT2 OS=Pongo abelii GN=NIT2 PE=3 SV=1

 Score =  237 bits (605), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 116/206 (56%), Positives = 143/206 (69%), Gaps = 6/206 (2%)

Query: 80  VAKFKVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAED 139
           +A F++ L QL +++    N+  A   I EAA +GAK++ LPE +NSPY    FP YAE 
Sbjct: 1   MASFRLALIQLQISSINSDNVTRACSFIREAATQGAKIVSLPECFNSPYGTKYFPEYAEK 60

Query: 140 IDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHL 199
           I        ST  LSEVA+   I ++GGSIPE    +LYNTC VFG DG L+AK+RKIHL
Sbjct: 61  I-----PGESTQKLSEVAKECSIYLIGGSIPEEDAGKLYNTCAVFGPDGTLLAKYRKIHL 115

Query: 200 FDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICY 259
           FDID+PGKITF ESK+L+ G++    DT   R+G+GICYD+RF ELA IY  RG  L+ Y
Sbjct: 116 FDIDVPGKITFQESKTLSPGDSFCTFDT-YCRVGLGICYDMRFAELAQIYAQRGCQLLVY 174

Query: 260 PGAFNMTTGPLHWELLQRARATDNQV 285
           PGAFN+TTGP HWELLQR RA DNQV
Sbjct: 175 PGAFNLTTGPAHWELLQRGRAVDNQV 200

Has a omega-amidase activity. The role of omega-amidase is to remove potentially toxic intermediates by converting alpha-ketoglutaramate and alpha-ketosuccinamate to biologically useful alpha-ketoglutarate and oxaloacetate, respectively.

Pongo abelii (taxid: 9601)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

>sp|Q4VBV9|NIT2_DANRE Omega-amidase NIT2 OS=Danio rerio GN=nit2 PE=2 SV=1

 Score =  236 bits (603), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 112/206 (54%), Positives = 146/206 (70%), Gaps = 5/206 (2%)

Query: 80  VAKFKVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAED 139
           ++KF++ + QL V+  K  N+  A+  ++EAA +GAK+++LPE +NSPY    F  YAE 
Sbjct: 1   MSKFRLAVVQLHVSKIKADNLGRAQTLVKEAAGQGAKVVVLPECFNSPYGTGFFKEYAEK 60

Query: 140 IDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHL 199
           I        ST +LSE A+   I +VGGSIPE  G +LYNTC VFG DG L+  HRKIHL
Sbjct: 61  IPG-----ESTQVLSETAKKCGIYLVGGSIPEEDGGKLYNTCSVFGPDGTLLVTHRKIHL 115

Query: 200 FDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICY 259
           FDID+PGKI F ES++L+ G++ ++ +T   ++G+GICYDIRF ELA IY  +G  L+ Y
Sbjct: 116 FDIDVPGKIRFQESETLSPGKSLSMFETPYCKVGVGICYDIRFAELAQIYAKKGCQLLVY 175

Query: 260 PGAFNMTTGPLHWELLQRARATDNQV 285
           PGAFNMTTGP HWELLQR RA DNQV
Sbjct: 176 PGAFNMTTGPAHWELLQRGRAVDNQV 201

Has a omega-amidase activity. The role of omega-amidase is to remove potentially toxic intermediates by converting alpha-ketoglutaramate and alpha-ketosuccinamate to biologically useful alpha-ketoglutarate and oxaloacetate, respectively.

Danio rerio (taxid: 7955)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

>sp|Q10166|YAUB_SCHPO UPF0012 hydrolase C26A3.11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC26A3.11 PE=3 SV=1

 Score =  234 bits (598), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 114/204 (55%), Positives = 145/204 (71%), Gaps = 3/204 (1%)

Query: 83  FKVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDA 142
           F++GL QL+ T DK  N+  AR  + EAA+ G+ +I+LPEI+NSPY    F  YAE I+ 
Sbjct: 44  FRIGLVQLANTKDKSENLQLARLKVLEAAKNGSNVIVLPEIFNSPYGTGYFNQYAEPIE- 102

Query: 143 GGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDI 202
             ++SPS   LS +A+  K  + GGSIPER   +LYNT  VF   GKLIA HRKIHLFDI
Sbjct: 103 --ESSPSYQALSSMAKDTKTYLFGGSIPERKDGKLYNTAMVFDPSGKLIAVHRKIHLFDI 160

Query: 203 DIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICYPGA 262
           DIPG ++F ES SL+ G+  T+VDT+ G+ G+GICYDIRF ELAMI    G  ++ YPGA
Sbjct: 161 DIPGGVSFRESDSLSPGDAMTMVDTEYGKFGLGICYDIRFPELAMIAARNGCSVMIYPGA 220

Query: 263 FNMTTGPLHWELLQRARATDNQVL 286
           FN++TGPLHWELL RARA DN++ 
Sbjct: 221 FNLSTGPLHWELLARARAVDNEMF 244

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 5

EC: .

EC: -

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	294
343887307	418	carbon-nitrogen hydrolase family protein	0.969	0.681	0.925	1e-153
224092113	370	predicted protein [Populus trichocarpa]	0.945	0.751	0.757	1e-115
357465811	357	Omega-amidase NIT2 [Medicago truncatula]	0.880	0.725	0.786	1e-111
226531330	356	uncharacterized protein LOC100280276 [Ze	0.816	0.674	0.778	1e-110
42573345	294	omega-amidase [Arabidopsis thaliana] gi|	0.765	0.765	0.867	1e-110
297807251	365	carbon-nitrogen hydrolase family protein	0.758	0.610	0.869	1e-110
195607250	311	hypothetical protein [Zea mays]	0.789	0.745	0.789	1e-110
22326744	369	omega-amidase [Arabidopsis thaliana] gi|	0.755	0.601	0.873	1e-109
296081697	307	unnamed protein product [Vitis vinifera]	0.775	0.742	0.864	1e-109
225429638	364	PREDICTED: omega-amidase NIT2-like [Viti	0.806	0.651	0.813	1e-109

>gi|343887307|dbj|BAK61853.1| carbon-nitrogen hydrolase family protein [Citrus unshiu]

 Score =  548 bits (1411), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 284/307 (92%), Positives = 285/307 (92%), Gaps = 22/307 (7%)

Query: 1   MKSAVAITSKIHLNLNLRRNHLYSPLSRSIFLGKAKPVFQSPPLIRTHSSNPNPNPIMAS 60
           MKSAVAITSKIHLNLNLRRNHLYSPLSRSIFLGKAKPVFQSPPLIRTHSSNPNPNPIMAS
Sbjct: 1   MKSAVAITSKIHLNLNLRRNHLYSPLSRSIFLGKAKPVFQSPPLIRTHSSNPNPNPIMAS 60

Query: 61  SSKPEQARAPPALPLPTPPVAK----------------------FKVGLCQLSVTADKER 98
           SSKPEQARAPPALPLPTPPVAK                      FKVGLCQLSVTADKER
Sbjct: 61  SSKPEQARAPPALPLPTPPVAKAISHFAYFLNLDDCYLCSVVALFKVGLCQLSVTADKER 120

Query: 99  NIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVAR 158
           NIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVAR
Sbjct: 121 NIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVAR 180

Query: 159 LLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTA 218
           LLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTA
Sbjct: 181 LLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTA 240

Query: 219 GETPTIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRA 278
           GETPTIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRA
Sbjct: 241 GETPTIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRA 300

Query: 279 RATDNQV 285
           RATDNQ+
Sbjct: 301 RATDNQL 307

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224092113|ref|XP_002309478.1| predicted protein [Populus trichocarpa] gi|222855454|gb|EEE93001.1| predicted protein [Populus trichocarpa]

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 225/297 (75%), Positives = 247/297 (83%), Gaps = 19/297 (6%)

Query: 1   MKSAVAITSKI----HLNLNLRRNHLYSPLSR---SIFLGKAKPVFQSPPLIRTHSSNPN 53
           MKSA++ T+ +    +L+L L  NH  SPLSR   S+F  K+   F  P L+  ++S  N
Sbjct: 1   MKSAISSTTTLLSSKNLSLKLHLNH--SPLSRLPSSLFRSKSNTHF--PSLLPRNNSTHN 56

Query: 54  P-----NPIMASSSKPEQARAPPALPLPTPPVAKFKVGLCQLSVTADKERNIAHARRAIE 108
                  PIMASS  PEQARAPPAL     PV  FK+GLCQLSVTADKERNIAHAR+AIE
Sbjct: 57  QKSQIHTPIMASSFMPEQARAPPAL---PLPVPPFKIGLCQLSVTADKERNIAHARKAIE 113

Query: 109 EAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGS 168
           EAA KGAKL++LPEIWNSPYS+D FPVYAEDIDAGG+ASPSTAMLSE A LLK+TIVGGS
Sbjct: 114 EAAAKGAKLVMLPEIWNSPYSNDCFPVYAEDIDAGGEASPSTAMLSEAAGLLKVTIVGGS 173

Query: 169 IPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTD 228
           IPERSGDRLYNTCCVF SDGKL AKHRKIHLFDIDIPGKITFIESK+LTAGETPTIVDT+
Sbjct: 174 IPERSGDRLYNTCCVFDSDGKLKAKHRKIHLFDIDIPGKITFIESKTLTAGETPTIVDTE 233

Query: 229 VGRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQV 285
           VGRIGIGICYDIRFQELA+IY ARGAHLICYPGAFNMTTGPLHWELLQRARA DNQ+
Sbjct: 234 VGRIGIGICYDIRFQELAIIYAARGAHLICYPGAFNMTTGPLHWELLQRARAADNQL 290

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357465811|ref|XP_003603190.1| Omega-amidase NIT2 [Medicago truncatula] gi|355492238|gb|AES73441.1| Omega-amidase NIT2 [Medicago truncatula]

 Score =  405 bits (1042), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 210/267 (78%), Positives = 235/267 (88%), Gaps = 8/267 (2%)

Query: 20  NHLYSPLSRSIFLGKAKPVFQSPPLIRTHSSNPNPNPIMASSS-KPEQARAPPALPLPTP 78
           NH  + +S + FL   K +F      + HSS   P+PIMA+SS   E AR+PPA+PLPTP
Sbjct: 19  NHTRNRISNNPFLFSNKTLF----FRQIHSS---PSPIMAASSINSELARSPPAIPLPTP 71

Query: 79  PVAKFKVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAE 138
           P+  FK+GLCQLSVT+DK++NIAHAR AI++AA KGAKLILLPEIWNSPYS+DSFPVYAE
Sbjct: 72  PLTNFKIGLCQLSVTSDKDKNIAHARTAIQDAAAKGAKLILLPEIWNSPYSNDSFPVYAE 131

Query: 139 DIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIH 198
           DIDAGGDASPSTAMLSE++ LLKITIVGGSIPERSGDRLYNTCCVFG+DGKL AKHRKIH
Sbjct: 132 DIDAGGDASPSTAMLSELSSLLKITIVGGSIPERSGDRLYNTCCVFGTDGKLKAKHRKIH 191

Query: 199 LFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLIC 258
           LFDIDIPGKITFIES +LTAG+TPTIVDT+VGRIGIGICYDIRF ELAMIY ARGAHL+C
Sbjct: 192 LFDIDIPGKITFIESLTLTAGDTPTIVDTEVGRIGIGICYDIRFPELAMIYAARGAHLLC 251

Query: 259 YPGAFNMTTGPLHWELLQRARATDNQV 285
           YPGAFNMTTGPLHWELLQRARATDNQ+
Sbjct: 252 YPGAFNMTTGPLHWELLQRARATDNQL 278

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226531330|ref|NP_001146676.1| uncharacterized protein LOC100280276 [Zea mays] gi|219888265|gb|ACL54507.1| unknown [Zea mays] gi|414865104|tpg|DAA43661.1| TPA: hypothetical protein ZEAMMB73_296008 [Zea mays] gi|414865105|tpg|DAA43662.1| TPA: hypothetical protein ZEAMMB73_296008 [Zea mays]

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 190/244 (77%), Positives = 216/244 (88%), Gaps = 4/244 (1%)

Query: 43  PLIRTHSSNPNPNPIMASSSKPEQARAPPALPLPTPPVAKFKVGLCQLSVTADKERNIAH 102
           PL R  +    PNP    S +PE+AR+PPAL LPTPP++KFKV LCQLSVTADK RNIAH
Sbjct: 39  PLHRIAAMASAPNP----SFRPEEARSPPALELPTPPLSKFKVALCQLSVTADKNRNIAH 94

Query: 103 ARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKI 162
           AR AIE+AA +GAKL+LLPEIWN PYS+DSFP YAEDI+AGGDA+PS +M+SEVAR+L++
Sbjct: 95  ARAAIEKAASEGAKLVLLPEIWNGPYSNDSFPEYAEDIEAGGDAAPSFSMMSEVARILQV 154

Query: 163 TIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETP 222
           T+VGGSI ERSG+ LYNTCC+FGSDGKL  KHRKIHLFDIDIPGKITF ESK+LTAG+ P
Sbjct: 155 TLVGGSIAERSGNNLYNTCCIFGSDGKLKGKHRKIHLFDIDIPGKITFKESKTLTAGQNP 214

Query: 223 TIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATD 282
           T+VDTDVGRIGIGICYDIRFQELAM+Y ARGAHL+CYPGAFNMTTGPLHWELLQRARATD
Sbjct: 215 TVVDTDVGRIGIGICYDIRFQELAMLYAARGAHLLCYPGAFNMTTGPLHWELLQRARATD 274

Query: 283 NQVL 286
           NQ+ 
Sbjct: 275 NQLF 278

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42573345|ref|NP_974769.1| omega-amidase [Arabidopsis thaliana] gi|332004370|gb|AED91753.1| omega-amidase [Arabidopsis thaliana]

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 197/227 (86%), Positives = 214/227 (94%), Gaps = 2/227 (0%)

Query: 64  PEQARAPPALPLPTPPVAKFKVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEI 123
           PEQAR P ALPLP PP+ KF +GLCQLSVT+DK+RNI+HA++AIEEAA KGAKL+LLPEI
Sbjct: 69  PEQARVPSALPLPAPPLTKFNIGLCQLSVTSDKKRNISHAKKAIEEAASKGAKLVLLPEI 128

Query: 124 WNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCV 183
           WNSPYS+DSFPVYAE+IDAGGDASPSTAMLSEV++ LKITI+GGSIPER GDRLYNTCCV
Sbjct: 129 WNSPYSNDSFPVYAEEIDAGGDASPSTAMLSEVSKRLKITIIGGSIPERVGDRLYNTCCV 188

Query: 184 FGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQ 243
           FGSDG+L AKHRKIHLFDIDIPGKITF+ESK+LTAGETPTIVDTDVGRIGIGICYDIRFQ
Sbjct: 189 FGSDGELKAKHRKIHLFDIDIPGKITFMESKTLTAGETPTIVDTDVGRIGIGICYDIRFQ 248

Query: 244 ELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQVLPHSP 290
           ELAMIY ARGAHL+CYPGAFNMTTGPLHWELLQRARATDNQV  H P
Sbjct: 249 ELAMIYAARGAHLLCYPGAFNMTTGPLHWELLQRARATDNQV--HEP 293

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297807251|ref|XP_002871509.1| carbon-nitrogen hydrolase family protein [Arabidopsis lyrata subsp. lyrata] gi|297317346|gb|EFH47768.1| carbon-nitrogen hydrolase family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  403 bits (1035), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 194/223 (86%), Positives = 213/223 (95%)

Query: 63  KPEQARAPPALPLPTPPVAKFKVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPE 122
           +PEQAR P ALPLP PP+ KF +GLCQLSVT+DK+RNI+HA++AIEEAA KGAKL+LLPE
Sbjct: 64  QPEQARVPSALPLPAPPLTKFNIGLCQLSVTSDKKRNISHAKKAIEEAASKGAKLVLLPE 123

Query: 123 IWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCC 182
           IWNSPYS+DSFPVYAEDIDAGGDASPSTAMLSEV++ L+ITI+GGSIPER GDRLYNTCC
Sbjct: 124 IWNSPYSNDSFPVYAEDIDAGGDASPSTAMLSEVSKRLRITIIGGSIPERVGDRLYNTCC 183

Query: 183 VFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRF 242
           VFGSDG+L AKHRKIHLFDIDIPGKITF+ESK+LTAGETPTIVDTDVGRIGIGICYDIRF
Sbjct: 184 VFGSDGELKAKHRKIHLFDIDIPGKITFMESKTLTAGETPTIVDTDVGRIGIGICYDIRF 243

Query: 243 QELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQV 285
           QELAMIY ARGAHL+CYPGAFNMTTGPLHWELLQRARATDNQ+
Sbjct: 244 QELAMIYAARGAHLLCYPGAFNMTTGPLHWELLQRARATDNQL 286

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|195607250|gb|ACG25455.1| hypothetical protein [Zea mays]

 Score =  402 bits (1034), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 188/238 (78%), Positives = 213/238 (89%), Gaps = 6/238 (2%)

Query: 49  SSNPNPNPIMASSSKPEQARAPPALPLPTPPVAKFKVGLCQLSVTADKERNIAHARRAIE 108
           +S PNP      S +PE+AR+PPAL LPTPP++KFKV LCQLSVTADK RNIAHAR AIE
Sbjct: 2   ASAPNP------SFRPEEARSPPALELPTPPLSKFKVALCQLSVTADKNRNIAHARAAIE 55

Query: 109 EAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGS 168
           +AA +GAKL+LLPEIWN PYS+DSFP YAEDI+AGGDA+PS +M+SEVAR L++T+VGGS
Sbjct: 56  KAASEGAKLVLLPEIWNGPYSNDSFPEYAEDIEAGGDAAPSFSMMSEVARSLQVTLVGGS 115

Query: 169 IPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTD 228
           I ERSG+ LYNTCC+FGSDGKL  KHRKIHLFDIDIPGKITF ESK+LTAG+ PT+VDTD
Sbjct: 116 IAERSGNNLYNTCCIFGSDGKLKGKHRKIHLFDIDIPGKITFKESKTLTAGQNPTVVDTD 175

Query: 229 VGRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQVL 286
           VGRIGIGICYDIRFQELAM+Y ARGAHL+CYPGAFNMTTGPLHWELLQRARATDNQ+ 
Sbjct: 176 VGRIGIGICYDIRFQELAMLYAARGAHLLCYPGAFNMTTGPLHWELLQRARATDNQLF 233

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22326744|ref|NP_196765.2| omega-amidase [Arabidopsis thaliana] gi|19715574|gb|AAL91613.1| AT5g12040/F14F18_210 [Arabidopsis thaliana] gi|20147243|gb|AAM10335.1| AT5g12040/F14F18_210 [Arabidopsis thaliana] gi|332004371|gb|AED91754.1| omega-amidase [Arabidopsis thaliana]

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 194/222 (87%), Positives = 212/222 (95%)

Query: 64  PEQARAPPALPLPTPPVAKFKVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEI 123
           PEQAR P ALPLP PP+ KF +GLCQLSVT+DK+RNI+HA++AIEEAA KGAKL+LLPEI
Sbjct: 69  PEQARVPSALPLPAPPLTKFNIGLCQLSVTSDKKRNISHAKKAIEEAASKGAKLVLLPEI 128

Query: 124 WNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCV 183
           WNSPYS+DSFPVYAE+IDAGGDASPSTAMLSEV++ LKITI+GGSIPER GDRLYNTCCV
Sbjct: 129 WNSPYSNDSFPVYAEEIDAGGDASPSTAMLSEVSKRLKITIIGGSIPERVGDRLYNTCCV 188

Query: 184 FGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQ 243
           FGSDG+L AKHRKIHLFDIDIPGKITF+ESK+LTAGETPTIVDTDVGRIGIGICYDIRFQ
Sbjct: 189 FGSDGELKAKHRKIHLFDIDIPGKITFMESKTLTAGETPTIVDTDVGRIGIGICYDIRFQ 248

Query: 244 ELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQV 285
           ELAMIY ARGAHL+CYPGAFNMTTGPLHWELLQRARATDNQ+
Sbjct: 249 ELAMIYAARGAHLLCYPGAFNMTTGPLHWELLQRARATDNQL 290

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296081697|emb|CBI20702.3| unnamed protein product [Vitis vinifera]

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 197/228 (86%), Positives = 215/228 (94%)

Query: 58  MASSSKPEQARAPPALPLPTPPVAKFKVGLCQLSVTADKERNIAHARRAIEEAAEKGAKL 117
           M+SS KPEQAR PPA+P PTPP++KFK+GLCQLSVTADKERNIAHAR+AIEEA EKGA+L
Sbjct: 1   MSSSFKPEQARVPPAIPPPTPPLSKFKIGLCQLSVTADKERNIAHARKAIEEAVEKGAQL 60

Query: 118 ILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRL 177
           +LLPEIWNSPYS+DSFPVYAEDIDAG DASPSTAMLSEV+  LKITIVGGSIPER GD+L
Sbjct: 61  VLLPEIWNSPYSNDSFPVYAEDIDAGSDASPSTAMLSEVSHALKITIVGGSIPERCGDQL 120

Query: 178 YNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGIC 237
           YNTCCVFGSDGKL AKHRKIHLFDI+IPGKITF+ESK+LTAG +PTIVDT+VGRIGIGIC
Sbjct: 121 YNTCCVFGSDGKLKAKHRKIHLFDINIPGKITFMESKTLTAGGSPTIVDTEVGRIGIGIC 180

Query: 238 YDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQV 285
           YDIRF ELAM+Y ARGAHLICYPGAFNMTTGPLHWELLQRARA DNQ+
Sbjct: 181 YDIRFSELAMLYAARGAHLICYPGAFNMTTGPLHWELLQRARAADNQL 228

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225429638|ref|XP_002279687.1| PREDICTED: omega-amidase NIT2-like [Vitis vinifera]

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 201/247 (81%), Positives = 221/247 (89%), Gaps = 10/247 (4%)

Query: 49  SSNPNP----------NPIMASSSKPEQARAPPALPLPTPPVAKFKVGLCQLSVTADKER 98
           +S PNP          +  M+SS KPEQAR PPA+P PTPP++KFK+GLCQLSVTADKER
Sbjct: 39  TSTPNPFHTQLRTAKISASMSSSFKPEQARVPPAIPPPTPPLSKFKIGLCQLSVTADKER 98

Query: 99  NIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVAR 158
           NIAHAR+AIEEA EKGA+L+LLPEIWNSPYS+DSFPVYAEDIDAG DASPSTAMLSEV+ 
Sbjct: 99  NIAHARKAIEEAVEKGAQLVLLPEIWNSPYSNDSFPVYAEDIDAGSDASPSTAMLSEVSH 158

Query: 159 LLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTA 218
            LKITIVGGSIPER GD+LYNTCCVFGSDGKL AKHRKIHLFDI+IPGKITF+ESK+LTA
Sbjct: 159 ALKITIVGGSIPERCGDQLYNTCCVFGSDGKLKAKHRKIHLFDINIPGKITFMESKTLTA 218

Query: 219 GETPTIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRA 278
           G +PTIVDT+VGRIGIGICYDIRF ELAM+Y ARGAHLICYPGAFNMTTGPLHWELLQRA
Sbjct: 219 GGSPTIVDTEVGRIGIGICYDIRFSELAMLYAARGAHLICYPGAFNMTTGPLHWELLQRA 278

Query: 279 RATDNQV 285
           RA DNQ+
Sbjct: 279 RAADNQL 285

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	294
TAIR|locus:2143039	369	AT5G12040 [Arabidopsis thalian	0.891	0.710	0.675	1.2e-90
RGD|1310494	276	Nit2 "nitrilase family, member	0.683	0.728	0.533	1e-52
UNIPROTKB|Q2T9R6	276	NIT2 "Omega-amidase NIT2" [Bos	0.683	0.728	0.524	1.7e-52
UNIPROTKB|F1MJ59	276	NIT2 "Omega-amidase NIT2" [Bos	0.683	0.728	0.524	4.4e-52
UNIPROTKB|Q9NQR4	276	NIT2 "Omega-amidase NIT2" [Hom	0.683	0.728	0.519	7.2e-52
MGI|MGI:1261838	276	Nit2 "nitrilase family, member	0.683	0.728	0.524	7.2e-52
UNIPROTKB|F1PTD1	283	NIT2 "Uncharacterized protein"	0.683	0.710	0.519	4e-51
ZFIN|ZDB-GENE-050522-65	284	nit2 "nitrilase family, member	0.683	0.707	0.509	3.6e-50
UNIPROTKB|F1SKY2	283	NIT2 "Uncharacterized protein"	0.693	0.720	0.507	4.6e-50
POMBASE|SPAC26A3.11	322	SPAC26A3.11 "amidohydrolase" [	0.680	0.621	0.517	1.2e-49

TAIR|locus:2143039 AT5G12040 [Arabidopsis thaliana (taxid:3702)]

 Score = 904 (323.3 bits), Expect = 1.2e-90, P = 1.2e-90
 Identities = 183/271 (67%), Positives = 204/271 (75%)

Query:    24 SPLSRSI-----FLGKAKPVFQSPPLIRTHSSNPNP----NPIMASSSKPEQARXXXXXX 74
             +PLSR I     FL K  P   +   ++  SS+ +     +  MASS  PEQAR      
Sbjct:    20 NPLSRFISLKSNFLPKLSPRSITSHTLKLPSSSTSALRSISSSMASSFNPEQARVPSALP 79

Query:    75 XXXXXVAKFKVGLCQLSVTADKEXXXXXXXXXXXXXXXXXXXXXXXPEIWNSPYSHDSFP 134
                  + KF +GLCQLSVT+DK+                       PEIWNSPYS+DSFP
Sbjct:    80 LPAPPLTKFNIGLCQLSVTSDKKRNISHAKKAIEEAASKGAKLVLLPEIWNSPYSNDSFP 139

Query:   135 VYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKH 194
             VYAE+IDAGGDASPSTAMLSEV++ LKITI+GGSIPER GDRLYNTCCVFGSDG+L AKH
Sbjct:   140 VYAEEIDAGGDASPSTAMLSEVSKRLKITIIGGSIPERVGDRLYNTCCVFGSDGELKAKH 199

Query:   195 RKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQELAMIYGARGA 254
             RKIHLFDIDIPGKITF+ESK+LTAGETPTIVDTDVGRIGIGICYDIRFQELAMIY ARGA
Sbjct:   200 RKIHLFDIDIPGKITFMESKTLTAGETPTIVDTDVGRIGIGICYDIRFQELAMIYAARGA 259

Query:   255 HLICYPGAFNMTTGPLHWELLQRARATDNQV 285
             HL+CYPGAFNMTTGPLHWELLQRARATDNQ+
Sbjct:   260 HLLCYPGAFNMTTGPLHWELLQRARATDNQL 290

GO:0006807 "nitrogen compound metabolic process" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016810 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds" evidence=IEA;ISS

GO:0008270 "zinc ion binding" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

RGD|1310494 Nit2 "nitrilase family, member 2" [Rattus norvegicus (taxid:10116)]

 Score = 546 (197.3 bits), Expect = 1.0e-52, P = 1.0e-52
 Identities = 110/206 (53%), Positives = 134/206 (65%)

Query:    80 VAKFKVGLCQLSVTADKEXXXXXXXXXXXXXXXXXXXXXXXPEIWNSPYSHDSFPVYAED 139
             ++ F++ L QL V++ K                        PE +NSPY  + FP YAE 
Sbjct:     1 MSTFRLALIQLQVSSIKSDNITRACSLVREAAKQGANIVSLPECFNSPYGTNYFPEYAEK 60

Query:   140 IDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHL 199
             I   G+   ST  LSEVA+   I ++GGSIPE    +LYNTC VFG DG L+ KHRKIHL
Sbjct:    61 IP--GE---STKKLSEVAKENSIYLIGGSIPEEDDGKLYNTCAVFGPDGNLLVKHRKIHL 115

Query:   200 FDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICY 259
             FDID+PGKITF ESK+L+ G++ +  DT   R+G+GICYD+RF ELA IY  RG  L+ Y
Sbjct:   116 FDIDVPGKITFQESKTLSPGDSFSTFDTPYCRVGLGICYDMRFAELAQIYARRGCQLLVY 175

Query:   260 PGAFNMTTGPLHWELLQRARATDNQV 285
             PGAFNMTTGP HWELLQRARA DNQV
Sbjct:   176 PGAFNMTTGPAHWELLQRARAVDNQV 201

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0005813 "centrosome" evidence=IEA;ISO

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

GO:0050152 "omega-amidase activity" evidence=IEA

UNIPROTKB|Q2T9R6 NIT2 "Omega-amidase NIT2" [Bos taurus (taxid:9913)]

 Score = 544 (196.6 bits), Expect = 1.7e-52, P = 1.7e-52
 Identities = 108/206 (52%), Positives = 134/206 (65%)

Query:    80 VAKFKVGLCQLSVTADKEXXXXXXXXXXXXXXXXXXXXXXXPEIWNSPYSHDSFPVYAED 139
             +A F++ L QL V++ K                        PE +NSPY    FP YAE 
Sbjct:     1 MATFRLALIQLQVSSIKSENLTRACGLIREASKQGAQIVSLPECFNSPYGTKYFPDYAEK 60

Query:   140 IDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHL 199
             I   GD   ST  LSEVA+   + ++GGSIPE+   +LYNTC VFG DG L+ KHRK+HL
Sbjct:    61 IP--GD---STQKLSEVAKECSMYVIGGSIPEKDAGKLYNTCAVFGPDGTLLVKHRKLHL 115

Query:   200 FDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICY 259
             FDID+PGKITF ES++L+ G++ ++ DT   R+G+GICYDIRF ELA IY  RG  L+ Y
Sbjct:   116 FDIDVPGKITFQESETLSPGDSFSLFDTPYCRVGLGICYDIRFAELAQIYAQRGCQLLVY 175

Query:   260 PGAFNMTTGPLHWELLQRARATDNQV 285
             PGAFN+TTGP HWELLQR RA DNQV
Sbjct:   176 PGAFNLTTGPAHWELLQRGRAVDNQV 201

GO:0005737 "cytoplasm" evidence=IEA

GO:0050152 "omega-amidase activity" evidence=IEA

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

UNIPROTKB|F1MJ59 NIT2 "Omega-amidase NIT2" [Bos taurus (taxid:9913)]

 Score = 540 (195.1 bits), Expect = 4.4e-52, P = 4.4e-52
 Identities = 108/206 (52%), Positives = 133/206 (64%)

Query:    80 VAKFKVGLCQLSVTADKEXXXXXXXXXXXXXXXXXXXXXXXPEIWNSPYSHDSFPVYAED 139
             +A F++ L QL V++ K                        PE +NSPY    FP YAE 
Sbjct:     1 MATFRLALIQLQVSSIKSENLTRACGLIREASKQGAQIVSLPECFNSPYGTKYFPDYAEK 60

Query:   140 IDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHL 199
             I   GD   ST  LSEVA+   + ++GGSIPE+   +LYNTC VFG DG L+ KHRK+HL
Sbjct:    61 IP--GD---STQKLSEVAKECSMYVIGGSIPEKDAGKLYNTCAVFGPDGTLLVKHRKLHL 115

Query:   200 FDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICY 259
             FDID+PGKITF ES++L+ G++ +  DT   R+G+GICYDIRF ELA IY  RG  L+ Y
Sbjct:   116 FDIDVPGKITFQESETLSPGDSFSSFDTPYCRVGLGICYDIRFAELAQIYAQRGCQLLVY 175

Query:   260 PGAFNMTTGPLHWELLQRARATDNQV 285
             PGAFN+TTGP HWELLQR RA DNQV
Sbjct:   176 PGAFNLTTGPAHWELLQRGRAVDNQV 201

GO:0005813 "centrosome" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0016810 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds" evidence=IEA

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

UNIPROTKB|Q9NQR4 NIT2 "Omega-amidase NIT2" [Homo sapiens (taxid:9606)]

 Score = 538 (194.4 bits), Expect = 7.2e-52, P = 7.2e-52
 Identities = 107/206 (51%), Positives = 133/206 (64%)

Query:    80 VAKFKVGLCQLSVTADKEXXXXXXXXXXXXXXXXXXXXXXXPEIWNSPYSHDSFPVYAED 139
             +  F++ L QL +++ K                        PE +NSPY    FP YAE 
Sbjct:     1 MTSFRLALIQLQISSIKSDNVTRACSFIREAATQGAKIVSLPECFNSPYGAKYFPEYAEK 60

Query:   140 IDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHL 199
             I   G+   ST  LSEVA+   I ++GGSIPE    +LYNTC VFG DG L+AK+RKIHL
Sbjct:    61 IP--GE---STQKLSEVAKECSIYLIGGSIPEEDAGKLYNTCAVFGPDGTLLAKYRKIHL 115

Query:   200 FDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICY 259
             FDID+PGKITF ESK+L+ G++ +  DT   R+G+GICYD+RF ELA IY  RG  L+ Y
Sbjct:   116 FDIDVPGKITFQESKTLSPGDSFSTFDTPYCRVGLGICYDMRFAELAQIYAQRGCQLLVY 175

Query:   260 PGAFNMTTGPLHWELLQRARATDNQV 285
             PGAFN+TTGP HWELLQR+RA DNQV
Sbjct:   176 PGAFNLTTGPAHWELLQRSRAVDNQV 201

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

GO:0050152 "omega-amidase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005737 "cytoplasm" evidence=IDA

GO:0005813 "centrosome" evidence=IDA

MGI|MGI:1261838 Nit2 "nitrilase family, member 2" [Mus musculus (taxid:10090)]

 Score = 538 (194.4 bits), Expect = 7.2e-52, P = 7.2e-52
 Identities = 108/206 (52%), Positives = 133/206 (64%)

Query:    80 VAKFKVGLCQLSVTADKEXXXXXXXXXXXXXXXXXXXXXXXPEIWNSPYSHDSFPVYAED 139
             ++ F++ L QL V++ K                        PE +NSPY    FP YAE 
Sbjct:     1 MSTFRLALIQLQVSSIKSDNLTRACSLVREAAKQGANIVSLPECFNSPYGTTYFPDYAEK 60

Query:   140 IDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHL 199
             I   G+   ST  LSEVA+   I ++GGSIPE    +LYNTC VFG DG L+ KHRKIHL
Sbjct:    61 IP--GE---STQKLSEVAKESSIYLIGGSIPEEDAGKLYNTCSVFGPDGSLLVKHRKIHL 115

Query:   200 FDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICY 259
             FDID+PGKITF ESK+L+ G++ +  DT   ++G+GICYD+RF ELA IY  RG  L+ Y
Sbjct:   116 FDIDVPGKITFQESKTLSPGDSFSTFDTPYCKVGLGICYDMRFAELAQIYAQRGCQLLVY 175

Query:   260 PGAFNMTTGPLHWELLQRARATDNQV 285
             PGAFN+TTGP HWELLQRARA DNQV
Sbjct:   176 PGAFNLTTGPAHWELLQRARAVDNQV 201

GO:0005737 "cytoplasm" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0016810 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds" evidence=IEA

GO:0050152 "omega-amidase activity" evidence=IEA

UNIPROTKB|F1PTD1 NIT2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 531 (192.0 bits), Expect = 4.0e-51, P = 4.0e-51
 Identities = 107/206 (51%), Positives = 131/206 (63%)

Query:    80 VAKFKVGLCQLSVTADKEXXXXXXXXXXXXXXXXXXXXXXXPEIWNSPYSHDSFPVYAED 139
             +A F++ L QL V++ K                        PE +NSPY    FP YAE 
Sbjct:     8 MATFRLALIQLQVSSIKSENLARACGLVREAARQGAKVVSLPECFNSPYGTKYFPEYAEK 67

Query:   140 IDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHL 199
             I   G+   ST  LSEVA+   + ++GGSIPE    +LYNTC VFG DG L+ K+RK+HL
Sbjct:    68 IP--GE---STQKLSEVAKECSVYLIGGSIPEEDAGKLYNTCAVFGPDGTLLVKYRKLHL 122

Query:   200 FDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICY 259
             FDIDIPGKITF ESK+LT G++ +  DT   R+G+GICYD+RF ELA IY  RG  L+ Y
Sbjct:   123 FDIDIPGKITFHESKTLTPGDSFSTFDTPYCRVGLGICYDMRFAELAQIYAQRGCQLLVY 182

Query:   260 PGAFNMTTGPLHWELLQRARATDNQV 285
             P AFNMTTGP HWELLQR RA DNQ+
Sbjct:   183 PAAFNMTTGPAHWELLQRGRAVDNQL 208

GO:0016810 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds" evidence=IEA

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

ZFIN|ZDB-GENE-050522-65 nit2 "nitrilase family, member 2" [Danio rerio (taxid:7955)]

 Score = 522 (188.8 bits), Expect = 3.6e-50, P = 3.6e-50
 Identities = 105/206 (50%), Positives = 132/206 (64%)

Query:    80 VAKFKVGLCQLSVTADKEXXXXXXXXXXXXXXXXXXXXXXXPEIWNSPYSHDSFPVYAED 139
             ++KF++ + QL V+  K                        PE +NSPY    F  YAE 
Sbjct:     8 MSKFRLAVVQLHVSKIKADNLGRAQTLVTEAAGQGAKVVVLPECFNSPYGTGFFKEYAEK 67

Query:   140 IDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHL 199
             I   G+   ST +LSE A+   I +VGGSIPE  G +LYNTC VFG DGKL+  HRKIHL
Sbjct:    68 IP--GE---STQVLSETAKKCGIYLVGGSIPEEDGGKLYNTCSVFGPDGKLLVTHRKIHL 122

Query:   200 FDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICY 259
             FDID+PGKI F ES++L+ G++ ++ +T   ++G+GICYDIRF ELA IY  +G  L+ Y
Sbjct:   123 FDIDVPGKIRFQESETLSPGKSLSMFETPYCKVGVGICYDIRFAELAQIYAKKGCQLLVY 182

Query:   260 PGAFNMTTGPLHWELLQRARATDNQV 285
             PGAFNMTTGP HWELLQR RA DNQV
Sbjct:   183 PGAFNMTTGPAHWELLQRGRAVDNQV 208

GO:0016810 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds" evidence=IEA

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

GO:0050152 "omega-amidase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|F1SKY2 NIT2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 521 (188.5 bits), Expect = 4.6e-50, P = 4.6e-50
 Identities = 106/209 (50%), Positives = 131/209 (62%)

Query:    80 VAKFKVGLCQLSVTADKEXXXXXXXXXXXXXXXXXXXXXXXPEIWNSPYSHDSFPVYAED 139
             +A F++ L QL V++ K                        PE +NSPY    FP YAE 
Sbjct:     8 MATFRLALIQLHVSSVKSDNLTRACGFIQEAAKQGAKIISLPECFNSPYGTKYFPEYAEK 67

Query:   140 IDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHL 199
             I   GD   ST  LSEVA+   + ++GGSIPE    +LYNTC VFG DG L+AK+RK+HL
Sbjct:    68 IP--GD---STQKLSEVAKECGVYVIGGSIPEEDAGKLYNTCAVFGPDGTLLAKYRKLHL 122

Query:   200 FDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICY 259
             FDID+PGKITF ESK+L+ G++ +  DT   R+G+GICYDIRF ELA IY  RG  L+ Y
Sbjct:   123 FDIDVPGKITFQESKTLSPGDSFSTFDTPYCRVGLGICYDIRFAELAQIYAQRGCQLLVY 182

Query:   260 PGAFNMTTGPLHWELLQRARATDNQVLPH 288
             PGAFN+TTGP HWELLQR R  + Q   H
Sbjct:   183 PGAFNLTTGPAHWELLQRGRFIEVQFTVH 211

GO:0005813 "centrosome" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0016810 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds" evidence=IEA

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

POMBASE|SPAC26A3.11 SPAC26A3.11 "amidohydrolase" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 517 (187.1 bits), Expect = 1.2e-49, P = 1.2e-49
 Identities = 105/203 (51%), Positives = 130/203 (64%)

Query:    83 FKVGLCQLSVTADKEXXXXXXXXXXXXXXXXXXXXXXXPEIWNSPYSHDSFPVYAEDIDA 142
             F++GL QL+ T DK                        PEI+NSPY    F  YAE I+ 
Sbjct:    44 FRIGLVQLANTKDKSENLQLARLKVLEAAKNGSNVIVLPEIFNSPYGTGYFNQYAEPIE- 102

Query:   143 GGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDI 202
               ++SPS   LS +A+  K  + GGSIPER   +LYNT  VF   GKLIA HRKIHLFDI
Sbjct:   103 --ESSPSYQALSSMAKDTKTYLFGGSIPERKDGKLYNTAMVFDPSGKLIAVHRKIHLFDI 160

Query:   203 DIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICYPGA 262
             DIPG ++F ES SL+ G+  T+VDT+ G+ G+GICYDIRF ELAMI    G  ++ YPGA
Sbjct:   161 DIPGGVSFRESDSLSPGDAMTMVDTEYGKFGLGICYDIRFPELAMIAARNGCSVMIYPGA 220

Query:   263 FNMTTGPLHWELLQRARATDNQV 285
             FN++TGPLHWELL RARA DN++
Sbjct:   221 FNLSTGPLHWELLARARAVDNEM 243

GO:0005737 "cytoplasm" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS;IDA

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

GO:0016810 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5R4L6	NIT2_PONAB	3, ., 5, ., 1, ., 3	0.5631	0.6802	0.7272	yes	no
Q2T9R6	NIT2_BOVIN	3, ., 5, ., 1, ., 3	0.5631	0.6836	0.7282	yes	no
Q9JHW2	NIT2_MOUSE	3, ., 5, ., 1, ., 3	0.5582	0.6836	0.7282	yes	no
Q10166	YAUB_SCHPO	3, ., 5, ., -, ., -	0.5588	0.6836	0.6242	yes	no
Q9NQR4	NIT2_HUMAN	3, ., 5, ., 1, ., 3	0.5631	0.6836	0.7282	yes	no
P49954	NIT3_YEAST	3, ., 5, ., -, ., -	0.5167	0.6904	0.6975	yes	no
Q54JM9	NIT2_DICDI	3, ., 5, ., -, ., -	0.5242	0.6768	0.6067	yes	no
Q4VBV9	NIT2_DANRE	3, ., 5, ., 1, ., 3	0.5436	0.6836	0.7256	yes	no
Q497B0	NIT2_RAT	3, ., 5, ., 1, ., 3	0.5728	0.6836	0.7282	yes	no
Q28IE5	NIT2_XENTR	3, ., 5, ., 1, ., 3	0.5533	0.6836	0.7282	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.5.1.3	0.824
3rd Layer	3.5.1	0.766

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	294
cd07572	265	cd07572, nit, Nit1, Nit 2, and related proteins, a	1e-116
cd07197	253	cd07197, nitrilase, Nitrilase superfamily, includi	3e-61
cd07583	253	cd07583, nitrilase_5, Uncharacterized subgroup of	7e-61
COG0388	274	COG0388, COG0388, Predicted amidohydrolase [Genera	3e-57
pfam00795	172	pfam00795, CN_hydrolase, Carbon-nitrogen hydrolase	3e-49
cd07581	255	cd07581, nitrilase_3, Uncharacterized subgroup of	3e-48
PLN02798	286	PLN02798, PLN02798, nitrilase	1e-42
cd07573	284	cd07573, CPA, N-carbamoylputrescine amidohydrolase	2e-40
cd07580	268	cd07580, nitrilase_2, Uncharacterized subgroup of	2e-37
cd07584	258	cd07584, nitrilase_6, Uncharacterized subgroup of	4e-35
cd07585	261	cd07585, nitrilase_7, Uncharacterized subgroup of	2e-32
cd07576	254	cd07576, R-amidase_like, Pseudomonas sp	1e-31
TIGR03381	279	TIGR03381, agmatine_aguB, N-carbamoylputrescine am	6e-29
cd07574	280	cd07574, nitrilase_Rim1_like, Uncharacterized subg	1e-27
cd07568	287	cd07568, ML_beta-AS_like, mammalian-like beta-alan	5e-27
cd07577	259	cd07577, Ph0642_like, Pyrococcus horikoshii Ph0642	3e-26
PLN02747	296	PLN02747, PLN02747, N-carbamolyputrescine amidase	2e-21
cd07564	297	cd07564, nitrilases_CHs, Nitrilases, cyanide hydra	2e-20
cd07586	269	cd07586, nitrilase_8, Uncharacterized subgroup of	8e-20
cd07587	363	cd07587, ML_beta-AS, mammalian-like beta-alanine s	4e-18
cd07578	258	cd07578, nitrilase_1_R1, First nitrilase domain of	5e-18
cd07579	279	cd07579, nitrilase_1_R2, Second nitrilase domain o	7e-17
PRK13981	540	PRK13981, PRK13981, NAD synthetase; Provisional	5e-16
cd07570	261	cd07570, GAT_Gln-NAD-synth, Glutamine aminotransfe	9e-15
PLN00202	405	PLN00202, PLN00202, beta-ureidopropionase	1e-14
PLN02504	346	PLN02504, PLN02504, nitrilase	3e-14
cd07582	294	cd07582, nitrilase_4, Uncharacterized subgroup of	3e-14
TIGR04048	301	TIGR04048, nitrile_sll0784, putative nitrilase, sl	7e-13
cd07575	252	cd07575, Xc-1258_like, Xanthomonas campestris XC12	4e-12
cd07571	270	cd07571, ALP_N-acyl_transferase, Apolipoprotein N-	4e-12
cd07567	299	cd07567, biotinidase_like, biotinidase and vanins	6e-12
cd07569	302	cd07569, DCase, N-carbamyl-D-amino acid amidohydro	1e-11
COG0815	518	COG0815, Lnt, Apolipoprotein N-acyltransferase [Ce	3e-08
TIGR00546	391	TIGR00546, lnt, apolipoprotein N-acyltransferase	7e-08
cd07566	295	cd07566, ScNTA1_like, Saccharomyces cerevisiae N-t	7e-08
PRK00302	505	PRK00302, lnt, apolipoprotein N-acyltransferase; R	2e-06
PRK02628	679	PRK02628, nadE, NAD synthetase; Reviewed	2e-05

>gnl|CDD|143596 cd07572, nit, Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases)

 Score =  334 bits (860), Expect = e-116
 Identities = 104/204 (50%), Positives = 141/204 (69%), Gaps = 5/204 (2%)

Query: 84  KVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAG 143
           +V L Q++ TADKE N+A A+  IEEAA +GAKL++LPE +N P   D+F +   + +  
Sbjct: 1   RVALIQMTSTADKEANLARAKELIEEAAAQGAKLVVLPECFNYPGGTDAFKLALAEEEGD 60

Query: 144 GDASPSTAMLSEVARLLKITIVGGSIPERSG--DRLYNTCCVFGSDGKLIAKHRKIHLFD 201
           G   P+   LSE+A+   I +VGGSIPER     ++YNT  VF  DG+L+A++RKIHLFD
Sbjct: 61  G---PTLQALSELAKEHGIWLVGGSIPERDDDDGKVYNTSLVFDPDGELVARYRKIHLFD 117

Query: 202 IDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICYPG 261
           +D+PG I++ ES +LT G+   +VDT  G+IG+GICYD+RF ELA     +GA ++  P 
Sbjct: 118 VDVPGGISYRESDTLTPGDEVVVVDTPFGKIGLGICYDLRFPELARALARQGADILTVPA 177

Query: 262 AFNMTTGPLHWELLQRARATDNQV 285
           AF MTTGP HWELL RARA +NQ 
Sbjct: 178 AFTMTTGPAHWELLLRARAIENQC 201

This subgroup includes mammalian Nit1 and Nit2, the Nit1-like domain of the invertebrate NitFhit, and various uncharacterized bacterial and archaeal Nit-like proteins. Nit1 and Nit2 are candidate tumor suppressor proteins. In NitFhit, the Nit1-like domain is encoded as a fusion protein with the non-homologous tumor suppressor, fragile histidine triad (Fhit). Mammalian Nit1 and Fhit may affect distinct signal pathways, and both may participate in DNA damage-induced apoptosis. Nit1 is a negative regulator in T cells. Overexpression of Nit2 in HeLa cells leads to a suppression of cell growth through cell cycle arrest in G2. These Nit proteins and the Nit1-like domain of NitFhit belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 10. Length = 265

>gnl|CDD|143587 cd07197, nitrilase, Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes

 Score =  194 bits (495), Expect = 3e-61
 Identities = 89/205 (43%), Positives = 121/205 (59%), Gaps = 19/205 (9%)

Query: 85  VGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSF---PVYAEDI 140
           +   QL+    D E N+A A R I+EAAE+GA LI+LPE++ + YS +S       AE++
Sbjct: 1   IAAVQLAPKIGDVEANLAKALRLIKEAAEQGADLIVLPELFLTGYSFESAKEDLDLAEEL 60

Query: 141 DAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLF 200
           D      P+   L+E+A+ L I IV G I E+ GD+LYNT  V   DG++I K+RKIHLF
Sbjct: 61  D-----GPTLEALAELAKELGIYIVAG-IAEKDGDKLYNTAVVIDPDGEIIGKYRKIHLF 114

Query: 201 DIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICYP 260
           D        F E +  + G+   + DT  G+IG+ ICYD+RF ELA     +GA +I  P
Sbjct: 115 D--------FGERRYFSPGDEFPVFDTPGGKIGLLICYDLRFPELARELALKGADIILVP 166

Query: 261 GAFNMTTGPLHWELLQRARATDNQV 285
            A+  T    HWELL RARA +N V
Sbjct: 167 AAW-PTARREHWELLLRARAIENGV 190

This superfamily (also known as the C-N hydrolase superfamily) contains hydrolases that break carbon-nitrogen bonds; it includes nitrilases, cyanide dihydratases, aliphatic amidases, N-terminal amidases, beta-ureidopropionases, biotinidases, pantotheinase, N-carbamyl-D-amino acid amidohydrolases, the glutaminase domain of glutamine-dependent NAD+ synthetase, apolipoprotein N-acyltransferases, and N-carbamoylputrescine amidohydrolases, among others. These enzymes depend on a Glu-Lys-Cys catalytic triad, and work through a thiol acylenzyme intermediate. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. These oligomers include dimers, tetramers, hexamers, octamers, tetradecamers, octadecamers, as well as variable length helical arrangements and homo-oligomeric spirals. These proteins have roles in vitamin and co-enzyme metabolism, in detoxifying small molecules, in the synthesis of signaling molecules, and in the post-translational modification of proteins. They are used industrially, as biocatalysts in the fine chemical and pharmaceutical industry, in cyanide remediation, and in the treatment of toxic effluent. This superfamily has been classified previously in the literature, based on global and structure-based sequence analysis, into thirteen different enzyme classes (referred to as 1-13). This hierarchy includes those thirteen classes and a few additional subfamilies. A putative distant relative, the plasmid-borne TraB family, has not been included in the hierarchy. Length = 253

>gnl|CDD|143607 cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

 Score =  193 bits (493), Expect = 7e-61
 Identities = 82/208 (39%), Positives = 109/208 (52%), Gaps = 24/208 (11%)

Query: 84  KVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDA 142
           K+ L QL +   D E NI      IEEAA  GA LI+LPE+WN+ Y  D          A
Sbjct: 1   KIALIQLDIVWGDPEANIERVESLIEEAAAAGADLIVLPEMWNTGYFLDD-----LYELA 55

Query: 143 GGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDI 202
             D   + + LSE+A+   + IV GS+ E+ G +LYNT  V   DG+LIA +RKIHLF  
Sbjct: 56  DEDGGETVSFLSELAKKHGVNIVAGSVAEKEGGKLYNTAYVIDPDGELIATYRKIHLF-- 113

Query: 203 DIPGKITFI-ESKSLTAGETPTIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICYPG 261
                   + E K LTAG+   + + D G++G+ ICYD+RF EL       GA ++  P 
Sbjct: 114 ------GLMGEDKYLTAGDELEVFELDGGKVGLFICYDLRFPELFRKLALEGAEILFVPA 167

Query: 262 AFNMTTGPL----HWELLQRARATDNQV 285
            +     P     HW  L RARA +NQ 
Sbjct: 168 EW-----PAARIEHWRTLLRARAIENQA 190

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Length = 253

>gnl|CDD|223465 COG0388, COG0388, Predicted amidohydrolase [General function prediction only]

 Score =  184 bits (469), Expect = 3e-57
 Identities = 74/207 (35%), Positives = 107/207 (51%), Gaps = 13/207 (6%)

Query: 82  KFKVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDI 140
             +V   Q++    D   N+A   R I EAA +GA L++ PE++ + Y  +      E  
Sbjct: 2   MMRVAAAQMAPKAGDPAENLARILRLIREAAARGADLVVFPELFLTGYPCEDDLFLEEAA 61

Query: 141 DAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLF 200
                   +   L+ +A    + IVGG +PER    LYN   +   DG+++ K+RK+HLF
Sbjct: 62  AE--AGEETLEFLAALAEEGGVIIVGGPLPEREK--LYNNAALIDPDGEILGKYRKLHLF 117

Query: 201 DIDIPGKITFIESKSLTAG-ETPTIVDTDVGRIGIGICYDIRFQELAMIYGA-RGAHLIC 258
           D        + E +  T G E   + +TD G+IG+ ICYD+RF ELA    A  GA L+ 
Sbjct: 118 D------AFYEERRFFTPGDEGVVVFETDGGKIGLLICYDLRFPELARRLLALGGAELLL 171

Query: 259 YPGAFNMTTGPLHWELLQRARATDNQV 285
            P A+    G  HWE+L RARA +NQV
Sbjct: 172 VPAAWPAERGLDHWEVLLRARAIENQV 198

Length = 274

>gnl|CDD|216124 pfam00795, CN_hydrolase, Carbon-nitrogen hydrolase

 Score =  160 bits (408), Expect = 3e-49
 Identities = 68/183 (37%), Positives = 96/183 (52%), Gaps = 15/183 (8%)

Query: 84  KVGLCQLS-VTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVY--AEDI 140
           KV L QL     D E N+      IEEAA +GA L++LPE++   Y+H +      AE I
Sbjct: 1   KVALVQLPPSAFDLEANLQKLLELIEEAARQGADLVVLPELFIPGYAHGATEYLELAEAI 60

Query: 141 DAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLF 200
                   +   LS +AR   IT+V G IPE+ G  LYNT  +   DG+L+ K+RK HL 
Sbjct: 61  P-----GETLQFLSALARKNGITVVAG-IPEKDGGGLYNTLVLIDPDGELLGKYRKRHLV 114

Query: 201 DIDIPGKITFIESKSLTAGETPT-IVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICY 259
            +       ++E      G     + DT VG++G+ ICY+IRF ELA +   +GA ++  
Sbjct: 115 PV-----GEWVERPLFGPGGATFPVFDTPVGKLGLLICYEIRFPELARMLALKGAEILAN 169

Query: 260 PGA 262
           P A
Sbjct: 170 PSA 172

This family contains hydrolases that break carbon-nitrogen bonds. The family includes: Nitrilase EC:3.5.5.1, Aliphatic amidase EC:3.5.1.4, Biotidinase EC:3.5.1.12, Beta-ureidopropionase EC:3.5.1.6. Nitrilase-related proteins generally have a conserved E-K-C catalytic triad, and are multimeric alpha-beta-beta-alpha sandwich proteins. Length = 172

>gnl|CDD|143605 cd07581, nitrilase_3, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

 Score =  160 bits (408), Expect = 3e-48
 Identities = 79/209 (37%), Positives = 110/209 (52%), Gaps = 21/209 (10%)

Query: 85  VGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVY--AEDIDA 142
           V L Q + + DKE N+   RR + EAA  GA L++ PE   + +          AE +D 
Sbjct: 1   VALAQFASSGDKEENLEKVRRLLAEAAAAGADLVVFPEYTMARFGDGLDDYARVAEPLD- 59

Query: 143 GGDASPSTAMLSEVARLLKITIVGGSIPERSGD-RLYNTCCVFGSDGKLIAKHRKIHLFD 201
                P  + L+ +AR L IT+V G + E +GD R+YNT  V G DG++IA +RKIHL+D
Sbjct: 60  ----GPFVSALARLARELGITVVAG-MFEPAGDGRVYNTLVVVGPDGEIIAVYRKIHLYD 114

Query: 202 IDIPGKITFIESKSLTAGET--PTIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICY 259
                   F ES ++  G+   P +      ++G+  CYD+RF ELA      GA +I  
Sbjct: 115 -----AFGFRESDTVAPGDELPPVVFVVGGVKVGLATCYDLRFPELARALALAGADVIVV 169

Query: 260 PGAFNMTTGPL---HWELLQRARATDNQV 285
           P A+    GP    HWE L RARA +N V
Sbjct: 170 PAAWV--AGPGKEEHWETLLRARALENTV 196

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Length = 255

>gnl|CDD|215428 PLN02798, PLN02798, nitrilase

 Score =  147 bits (372), Expect = 1e-42
 Identities = 75/213 (35%), Positives = 108/213 (50%), Gaps = 9/213 (4%)

Query: 76  PTPPVAKFKVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPV 135
                +  +V + Q++ T D   N A   R  +EAA  GAKL+ LPE ++     D   +
Sbjct: 4   AATAGSSVRVAVAQMTSTNDLAANFATCSRLAKEAAAAGAKLLFLPECFSFIGDKDGESL 63

Query: 136 -YAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGD--RLYNTCCVFGSDGKLIA 192
             AE +D      P       +AR   + +  G   E+  D   LYNT  +    G++ +
Sbjct: 64  AIAEPLDG-----PIMQRYRSLARESGLWLSLGGFQEKGPDDSHLYNTHVLIDDSGEIRS 118

Query: 193 KHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQEL-AMIYGA 251
            +RKIHLFD+D+PG     ES     G+T   VD+ VGR+G+ +CYD+RF EL   +   
Sbjct: 119 SYRKIHLFDVDVPGGPVLKESSFTAPGKTIVAVDSPVGRLGLTVCYDLRFPELYQQLRFE 178

Query: 252 RGAHLICYPGAFNMTTGPLHWELLQRARATDNQ 284
            GA ++  P AF   TG  HWE+L RARA + Q
Sbjct: 179 HGAQVLLVPSAFTKPTGEAHWEVLLRARAIETQ 211

Length = 286

>gnl|CDD|143597 cd07573, CPA, N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases)

 Score =  141 bits (358), Expect = 2e-40
 Identities = 71/218 (32%), Positives = 107/218 (49%), Gaps = 26/218 (11%)

Query: 83  FKVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPY-----SHDSFPVYA 137
             V L Q++ + D E N+A A   + EAA +GA+++ L E++ +PY       D F   A
Sbjct: 1   VTVALVQMACSEDPEANLAKAEELVREAAAQGAQIVCLQELFETPYFCQEEDEDYFD-LA 59

Query: 138 EDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLY-NTCCVFGSDGKLIAKHRK 196
           E    G    P+TA    +A+ L + I   S+ E+ G+ LY N+  V  +DG L+  +RK
Sbjct: 60  EPPIPG----PTTARFQALAKELGVVIP-VSLFEKRGNGLYYNSAVVIDADGSLLGVYRK 114

Query: 197 IHLFDIDIPGKITFIESKSLTAGETP-TIVDTDVGRIGIGICYDIRFQELAMIYGARGAH 255
           +H     IP    + E    T G+T   + DT  GRIG+ IC+D  F E A +   +GA 
Sbjct: 115 MH-----IPDDPGYYEKFYFTPGDTGFKVFDTRYGRIGVLICWDQWFPEAARLMALQGAE 169

Query: 256 LICYPGAF-NMTTGP-------LHWELLQRARATDNQV 285
           ++ YP A  +    P         W+ +QR  A  N V
Sbjct: 170 ILFYPTAIGSEPQEPPEGLDQRDAWQRVQRGHAIANGV 207

CPA (EC 3.5.1.53, also known as N-carbamoylputrescine amidase and carbamoylputrescine hydrolase) converts N-carbamoylputrescine to putrescine, a step in polyamine biosynthesis in plants and bacteria. This subgroup includes Arabidopsis thaliana CPA, also known as nitrilase-like 1 (NLP1), and Pseudomonas aeruginosa AguB. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 11. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer; P. aeruginosa AugB is a homohexamer, Arabidopsis thaliana NLP1 is a homooctomer. Length = 284

>gnl|CDD|143604 cd07580, nitrilase_2, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

 Score =  133 bits (337), Expect = 2e-37
 Identities = 64/182 (35%), Positives = 90/182 (49%), Gaps = 20/182 (10%)

Query: 84  KVGLCQLS-VTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPY---SHDSFPVYAED 139
           +V   Q      D + N+A +   I EAA+ GA L++LPE+ N+ Y   S D     AE+
Sbjct: 1   RVACVQFDPRVGDLDANLARSIELIREAADAGANLVVLPELANTGYVFESRDEAFALAEE 60

Query: 140 IDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHL 199
           +  G     ST   +E+A  L + IV G   ER GDRLYN+  + G DG +I  +RK HL
Sbjct: 61  VPDG----ASTRAWAELAAELGLYIVAG-FAERDGDRLYNSAVLVGPDG-VIGTYRKAHL 114

Query: 200 FDIDIPGKITFIESKSLTAG-ETPTIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLIC 258
           ++          E      G     + DT  GRIG+ ICYD  F E   +   +GA ++C
Sbjct: 115 WNE---------EKLLFEPGDLGLPVFDTPFGRIGVAICYDGWFPETFRLLALQGADIVC 165

Query: 259 YP 260
            P
Sbjct: 166 VP 167

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Length = 268

>gnl|CDD|143608 cd07584, nitrilase_6, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

 Score =  127 bits (320), Expect = 4e-35
 Identities = 68/206 (33%), Positives = 104/206 (50%), Gaps = 17/206 (8%)

Query: 84  KVGLCQL-SVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSF-PVYAEDID 141
           KV L Q+ SV  D + N+  A    +EAA +GA LI  PE+  + Y  D   P   E  +
Sbjct: 1   KVALIQMDSVLGDVKANLKKAAELCKEAAAEGADLICFPELATTGYRPDLLGPKLWELSE 60

Query: 142 AGGDASPSTAMLSEVARLLKITIVGGSIPERSGD--RLYNTCCVFGSDGKLIAKHRKIHL 199
                 P+  + SE+A+ L + IV G   E+ G   ++YN+  V   +G+ +  +RKIHL
Sbjct: 61  PID--GPTVRLFSELAKELGVYIVCG-FVEKGGVPGKVYNSAVVIDPEGESLGVYRKIHL 117

Query: 200 FDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICY 259
           + +         E +    GE   + DT  G+IG+ ICYD+ F E+A I   +GA +I  
Sbjct: 118 WGL---------EKQYFREGEQYPVFDTPFGKIGVMICYDMGFPEVARILTLKGAEVIFC 168

Query: 260 PGAFNMTTGPLHWELLQRARATDNQV 285
           P A+      + W++   ARA +N V
Sbjct: 169 PSAWREQDADI-WDINLPARALENTV 193

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Length = 258

>gnl|CDD|143609 cd07585, nitrilase_7, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

 Score =  120 bits (302), Expect = 2e-32
 Identities = 72/194 (37%), Positives = 96/194 (49%), Gaps = 18/194 (9%)

Query: 95  DKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLS 154
           DK RN+A   R   +AA +GA+L+  PE+  + Y+H      A   +A     PST  LS
Sbjct: 13  DKARNLAVIARWTRKAAAQGAELVCFPEMCITGYTHVR----ALSREAEVPDGPSTQALS 68

Query: 155 EVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESK 214
           ++AR   +TI+ G I E++GDR YNT  V   DG L+ ++RK+HLF           E  
Sbjct: 69  DLARRYGLTILAGLI-EKAGDRPYNTYLVCLPDG-LVHRYRKLHLFRR---------EHP 117

Query: 215 SLTAGETPTIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWEL 274
            + AG+   +  T   R GI ICYD  F E        GA ++  P A   TT P   E 
Sbjct: 118 YIAAGDEYPVFATPGVRFGILICYDNHFPENVRATALLGAEILFAPHATPGTTSPKGREW 177

Query: 275 LQR---ARATDNQV 285
             R   ARA DN V
Sbjct: 178 WMRWLPARAYDNGV 191

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Length = 261

>gnl|CDD|143600 cd07576, R-amidase_like, Pseudomonas sp

 Score =  117 bits (296), Expect = 1e-31
 Identities = 66/205 (32%), Positives = 94/205 (45%), Gaps = 19/205 (9%)

Query: 84  KVGLCQLS-VTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPY-SHDSFPVYAEDID 141
           ++ L Q      D   N+A    A   AA  GA L++ PE++ + Y   D+    AE  D
Sbjct: 1   RLALYQGPARDGDVAANLARLDEAAARAAAAGADLLVFPELFLTGYNIGDAVARLAEPAD 60

Query: 142 AGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFD 201
                 P+   L  +AR   I IV G  PER+G  +YN   +   DG ++A +RK HLF 
Sbjct: 61  G-----PALQALRAIARRHGIAIVVG-YPERAGGAVYNAAVLIDEDGTVLANYRKTHLFG 114

Query: 202 IDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICYPG 261
                     E  + T G+   +V+    R+G+ ICYD+ F EL       GA L+  P 
Sbjct: 115 DS--------ERAAFTPGDRFPVVELRGLRVGLLICYDVEFPELVRALALAGADLVLVPT 166

Query: 262 AFNMT-TGPLHWELLQRARATDNQV 285
           A  M   G +    L  ARA +NQ+
Sbjct: 167 A-LMEPYGFVA-RTLVPARAFENQI 189

MCI3434 R-amidase and related proteins (putative class 13 nitrilases). Pseudomonas sp. MCI3434 R-amidase hydrolyzes (R,S)-piperazine-2-tert-butylcarboxamide to form (R)-piperazine-2-carboxylic acid. It does so with strict R-stereoselectively. Its preferred substrates are carboxamide compounds which have the amino or imino group connected to their beta- or gamma-carbon. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group. It has been suggested that this subgroup represents a new class. Members of the nitrilase superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Native R-amidase however appears to be a monomer. Length = 254

>gnl|CDD|188311 TIGR03381, agmatine_aguB, N-carbamoylputrescine amidase

 Score =  111 bits (279), Expect = 6e-29
 Identities = 60/184 (32%), Positives = 93/184 (50%), Gaps = 15/184 (8%)

Query: 84  KVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPY----SHDSFPVYAED 139
            V   Q++ + D E NIA A R + EAA +GA++ILLPE++  PY      + +   A+ 
Sbjct: 2   TVAALQMACSDDVETNIARAERLVREAAARGAQIILLPELFEGPYFCKDQDEDYFALAQP 61

Query: 140 IDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHL 199
           +    +  P+      +A+ L + I   S  E++G+  YN+  +  +DG ++  +RK H 
Sbjct: 62  V----EGHPAIKRFQALAKELGVVIP-VSFFEKAGNAYYNSLAMIDADGSVLGVYRKSH- 115

Query: 200 FDIDIPGKITFIESKSLTAGETPTIV-DTDVGRIGIGICYDIRFQELAMIYGARGAHLIC 258
               IP    + E      G+T   V DT  GRIG+GIC+D  F E A      GA ++ 
Sbjct: 116 ----IPDGPGYQEKFYFRPGDTGFKVWDTRYGRIGVGICWDQWFPETARAMALMGAEVLF 171

Query: 259 YPGA 262
           YP A
Sbjct: 172 YPTA 175

Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one [Central intermediary metabolism, Polyamine biosynthesis]. Length = 279

>gnl|CDD|143598 cd07574, nitrilase_Rim1_like, Uncharacterized subgroup of the nitrilase superfamily; some members of this subgroup have an N-terminal RimI domain (class 12 nitrilases)

 Score =  107 bits (270), Expect = 1e-27
 Identities = 71/233 (30%), Positives = 95/233 (40%), Gaps = 36/233 (15%)

Query: 83  FKVGLCQLSVT--ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSP---YSHDSFPVYA 137
            +V   Q  +   A  E   A     + EAA  GA L++ PE +         ++     
Sbjct: 1   VRVAAAQYPLRRYASFEEFAAKVEYWVAEAAGYGADLLVFPEYFTMELLSLLPEAIDGLD 60

Query: 138 EDIDAGGD-ASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRK 196
           E I A         A+ SE+AR   I I+ GS+P R   RLYN   +FG DG  I    K
Sbjct: 61  EAIRALAALTPDYVALFSELARKYGINIIAGSMPVREDGRLYNRAYLFGPDGT-IGHQDK 119

Query: 197 IHLFDIDIPGKITFIESK--SLTAGETPTIVDTDVGRIGIGICYDIRFQELAMIYGARGA 254
           +H         +T  E +   ++ G+   + DTD+G+IGI ICYD  F ELA      GA
Sbjct: 120 LH---------MTPFEREEWGISGGDKLKVFDTDLGKIGILICYDSEFPELARALAEAGA 170

Query: 255 HLICYPGAFNMTTGPLHWELLQR----ARATDNQV----------LPHSPFVF 293
            L+  P      T         R    ARA +NQ            P SP V 
Sbjct: 171 DLLLVPSC----TDTRAGYWRVRIGAQARALENQCYVVQSGTVGNAPWSPAVD 219

Some members of this subgroup are implicated in post-translational modification, as they contain an N-terminal GCN5-related N-acetyltransferase (GNAT) protein RimI family domain. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 12. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Length = 280

>gnl|CDD|143592 cd07568, ML_beta-AS_like, mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases)

 Score =  106 bits (266), Expect = 5e-27
 Identities = 70/219 (31%), Positives = 94/219 (42%), Gaps = 30/219 (13%)

Query: 82  KFKVGLCQLSVTA--------DKERNIAHARRAIEEAAEKGAKLILLPEIWNSPY--SHD 131
             +VGL Q S            KE  I      I EAAE GA+++ L EI+  PY  +  
Sbjct: 3   IVRVGLIQASNVIPTDAPIEKQKEAMIQKHVTMIREAAEAGAQIVCLQEIFYGPYFCAEQ 62

Query: 132 SFPVY--AEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGK 189
               Y  AE+I  G    P+T   + +A+   + ++     +  G  LYNT  V  +DG 
Sbjct: 63  DTKWYEFAEEIPNG----PTTKRFAALAKEYNMVLILPIYEKEQGGTLYNTAAVIDADGT 118

Query: 190 LIAKHRKIHLFDIDIPGKITFIESKSLTAGET--PTIVDTDVGRIGIGICYDIRFQELAM 247
            + K+RK H     IP    F E      G    P + DT  G+IG+ ICYD  F E   
Sbjct: 119 YLGKYRKNH-----IPHVGGFWEKFYFRPGNLGYP-VFDTAFGKIGVYICYDRHFPEGWR 172

Query: 248 IYGARGAHLICYPGAFNMTTGPLH---WELLQRARATDN 283
             G  GA ++  P A   T   L    W+L Q A A  N
Sbjct: 173 ALGLNGAEIVFNPSA---TVAGLSEYLWKLEQPAAAVAN 208

This family includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This family belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Beta-ASs from this subgroup are found in various oligomeric states, dimer (human), hexamer (calf liver), decamer (Arabidopsis and Zea mays), and in the case of Drosophila melanogaster beta-AS, as a homooctamer assembled as a left-handed helical turn, with the possibility of higher order oligomers formed by adding dimers at either end. Rat beta-AS changes its oligomeric state (hexamer, trimer, dodecamer) in response to allosteric effectors. Eukaryotic Saccharomyces kluyveri beta-AS belongs to a different superfamily. Length = 287

>gnl|CDD|143601 cd07577, Ph0642_like, Pyrococcus horikoshii Ph0642 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases)

 Score =  103 bits (260), Expect = 3e-26
 Identities = 63/182 (34%), Positives = 89/182 (48%), Gaps = 23/182 (12%)

Query: 84  KVGLCQLS-VTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPY---SHDSFPVYAED 139
           KVG  Q +    + E+N+      I+      A LI+LPE++N+ Y   S +     AE 
Sbjct: 1   KVGYVQFNPKFGEVEKNLKKVESLIKGVE---ADLIVLPELFNTGYAFTSKEEVASLAES 57

Query: 140 IDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHL 199
           I  G    P+T  L E+AR     IV G +PER GD+ YN+  V G +G  I  +RK HL
Sbjct: 58  IPDG----PTTRFLQELARETGAYIVAG-LPERDGDKFYNSAVVVGPEG-YIGIYRKTHL 111

Query: 200 FDIDIPGKITFIESKSLTAGET-PTIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLIC 258
           F  +   K+ F        G+T   + D    RIG+ IC+D  F E A     +GA +I 
Sbjct: 112 FYEE---KLFF------EPGDTGFRVFDIGDIRIGVMICFDWYFPEAARTLALKGADIIA 162

Query: 259 YP 260
           +P
Sbjct: 163 HP 164

Uncharacterized subgroup of the nitrilase superfamily. This superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. Pyrococcus horikoshii Ph0642 is a hypothetical protein belonging to this subgroup. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). This subgroup was classified as belonging to class 13, which represents proteins that at the time were difficult to place in a distinct similarity group. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Length = 259

>gnl|CDD|215398 PLN02747, PLN02747, N-carbamolyputrescine amidase

 Score = 91.4 bits (227), Expect = 2e-21
 Identities = 56/218 (25%), Positives = 91/218 (41%), Gaps = 21/218 (9%)

Query: 79  PVAKFKVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFP-VYA 137
              K  V   Q + + D+  N+  A R + EA  KGA +IL+ E++   Y    F     
Sbjct: 3   MGRKVVVAALQFACSDDRAANVDKAERLVREAHAKGANIILIQELFEGYY----FCQAQR 58

Query: 138 EDIDAGGDASPSTAMLSEVARLLKI--TIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHR 195
           ED             ++ + +L K    ++  S  E + +  YN+  +  +DG  +  +R
Sbjct: 59  EDFFQRAKPYEGHPTIARMQKLAKELGVVIPVSFFEEANNAHYNSIAIIDADGTDLGLYR 118

Query: 196 KIHLFDIDIPGKITFIESKSLTAGETPTIV-DTDVGRIGIGICYDIRFQELAMIYGARGA 254
           K H     IP    + E      G+T   V DT   +IG+ IC+D  F E A     +GA
Sbjct: 119 KSH-----IPDGPGYQEKFYFNPGDTGFKVFDTKFAKIGVAICWDQWFPEAARAMVLQGA 173

Query: 255 HLICYPGAF-------NMTTGPLHWELLQRARATDNQV 285
            ++ YP A         + +   HW+ + +  A  N V
Sbjct: 174 EVLLYPTAIGSEPQDPGLDSRD-HWKRVMQGHAGANLV 210

Length = 296

>gnl|CDD|143588 cd07564, nitrilases_CHs, Nitrilases, cyanide hydratase (CH)s, and similar proteins (class 1 nitrilases)

 Score = 88.7 bits (221), Expect = 2e-20
 Identities = 55/172 (31%), Positives = 77/172 (44%), Gaps = 30/172 (17%)

Query: 83  FKVGLCQLS-VTADKERNIAHARRAIEEAAEKGAKLILLPEIW-----------NSPYSH 130
            KV   Q + V  D    +  A R IEEAA  GA+L++ PE +                 
Sbjct: 1   VKVAAVQAAPVFLDLAATVEKACRLIEEAAANGAQLVVFPEAFIPGYPYWIWFGAPAEGR 60

Query: 131 DSFPVYAED-IDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGK 189
           + F  Y E+ ++  G   P    L+E AR   I +V G   ER G  LYNT  +   DG+
Sbjct: 61  ELFARYYENSVEVDG---PELERLAEAARENGIYVVLGVS-ERDGGTLYNTQLLIDPDGE 116

Query: 190 LIAKHRKIHLFDIDIPGKITFIESKSLTA---GETPTIVDTDVGRIGIGICY 238
           L+ KHRK+         K T  E + +     G    +VDT +GR+G  IC+
Sbjct: 117 LLGKHRKL---------KPTHAE-RLVWGQGDGSGLRVVDTPIGRLGALICW 158

Nitrilases (nitrile aminohydrolases, EC:3.5.5.1) hydrolyze nitriles (RCN) to ammonia and the corresponding carboxylic acid. Most nitrilases prefer aromatic nitriles, some prefer arylacetonitriles and others aliphatic nitriles. This group includes the nitrilase cyanide dihydratase (CDH), which hydrolyzes inorganic cyanide (HCN) to produce formate. It also includes cyanide hydratase (CH), which hydrolyzes HCN to formamide. This group includes four Arabidopsis thaliana nitrilases (Ath)NIT1-4. AthNIT1-3 have a strong substrate preference for phenylpropionitrile (PPN) and other nitriles which may originate from the breakdown of glucosinolates. The product of PPN hydrolysis, phenylacetic acid has auxin activity. AthNIT1-3 can also convert indoacetonitrile to indole-3-acetic acid (IAA, auxin), but with a lower affinity and velocity. From their expression patterns, it has been speculated that NIT3 may produce IAA during the early stages of germination, and that NIT3 may produce IAA during embryo development and maturation. AthNIT4 has a strong substrate specificity for the nitrile, beta-cyano-L-alanine (Ala(CN)), an intermediate of cyanide detoxification. AthNIT4 has both a nitrilase activity and a nitrile hydratase (NHase) activity, which generate aspartic acid and asparagine respectively from Ala(CN). NHase catalyzes the hydration of nitriles to their corresponding amides. This subgroup belongs to a larger nitrilase superfamily comprised of belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 1. Length = 297

>gnl|CDD|143610 cd07586, nitrilase_8, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

 Score = 86.2 bits (214), Expect = 8e-20
 Identities = 62/227 (27%), Positives = 88/227 (38%), Gaps = 43/227 (18%)

Query: 84  KVGLCQL-SVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDA 142
           +V + Q+  V  D E N+      IE A E+GA L++ PE+  + Y+             
Sbjct: 1   RVAIAQIDPVLGDVEENLEKHLEIIETARERGADLVVFPELSLTGYN------------- 47

Query: 143 GGDASPSTAMLSEVARLLK-------ITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHR 195
            GD     AM ++  RL         I +V G + E    R YN+      DG+++  HR
Sbjct: 48  LGDLVYEVAMHADDPRLQALAEASGGICVVFGFVEEGRDGRFYNSAAYL-EDGRVVHVHR 106

Query: 196 KIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQELAMIYGARGAH 255
           K++L     P    F E +    G      DT  GR G+ IC D     L  +    GA 
Sbjct: 107 KVYL-----PTYGLFEEGRYFAPGSHLRAFDTRFGRAGVLICEDAWHPSLPYLLALDGAD 161

Query: 256 LICYP---------GAFNMTTGPLHWELLQRARATDNQVLPHSPFVF 293
           +I  P         G F+       WE L +  A  N V      VF
Sbjct: 162 VIFIPANSPARGVGGDFDNEEN---WETLLKFYAMMNGV----YVVF 201

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Length = 269

>gnl|CDD|143611 cd07587, ML_beta-AS, mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases)

 Score = 83.2 bits (206), Expect = 4e-18
 Identities = 69/225 (30%), Positives = 95/225 (42%), Gaps = 42/225 (18%)

Query: 64  PEQARAPPALPLPTPPVAKFKVGLCQLSVTADKERNIAHARRAIEE--------AAEKGA 115
           PEQ R P  +          +VGL Q  +       IA  R AI +        AA  G 
Sbjct: 55  PEQTRPPRIV----------RVGLIQNKIVLPTTAPIAEQREAIHDRIKKIIEAAAMAGV 104

Query: 116 KLILLPEIWNSPY---SHDSFP--VYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIP 170
            +I   E W  P+   + +  P   +AE  + G    P+T    E+A+   + IV   I 
Sbjct: 105 NIICFQEAWTMPFAFCTREKLPWCEFAESAEDG----PTTKFCQELAKKYNMVIVS-PIL 159

Query: 171 ERS---GDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIV-D 226
           ER    GD ++NT  V  + G ++ K RK H     IP    F ES     G T   V +
Sbjct: 160 ERDEEHGDTIWNTAVVISNSGNVLGKSRKNH-----IPRVGDFNESTYYMEGNTGHPVFE 214

Query: 227 TDVGRIGIGICYDIRFQELA-MIYGARGAHLICYPGAFNMTTGPL 270
           T  G+I + ICY  R   L  ++YG  GA ++  P A   T G L
Sbjct: 215 TQFGKIAVNICYG-RHHPLNWLMYGLNGAEIVFNPSA---TVGAL 255

This subgroup includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Beta-ASs from this subgroup are found in various oligomeric states, dimer (human), hexamer (calf liver), decamer (Arabidopsis and Zea mays), and in the case of Drosophila melanogaster beta-AS, as a homooctamer assembled as a left-handed helical turn, with the possibility of higher order oligomers formed by adding dimers at either end. Rat beta-AS changes its oligomeric state (hexamer, trimer, dodecamer) in response to allosteric effectors. Eukaryotic Saccharomyces kluyveri beta-AS belongs to a different superfamily. Length = 363

>gnl|CDD|143602 cd07578, nitrilase_1_R1, First nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

 Score = 81.0 bits (200), Expect = 5e-18
 Identities = 60/184 (32%), Positives = 83/184 (45%), Gaps = 22/184 (11%)

Query: 92  VTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPY---SHDSFPVYAEDIDAGGDASP 148
              +KERNI       EEAA  GA+LI+ PE+  + Y          + E I       P
Sbjct: 11  EMGEKERNIERLLALCEEAARAGARLIVTPEMATTGYCWYDRAEIAPFVEPI-----PGP 65

Query: 149 STAMLSEVARLLKITIVGG--SIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPG 206
           +TA  +E+AR     IV G   +  RSG   YN+  + G  G +I +HRK H +      
Sbjct: 66  TTARFAELAREHDCYIVVGLPEVDSRSG-IYYNSAVLIGPSG-VIGRHRKTHPY------ 117

Query: 207 KITFIESKSLTAGETPTIV-DTDVGRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNM 265
                E K    G+    V DT++GRI + IC DI F E A +    GA +IC+   +  
Sbjct: 118 ---ISEPKWAADGDLGHQVFDTEIGRIALLICMDIHFFETARLLALGGADVICHISNWLA 174

Query: 266 TTGP 269
              P
Sbjct: 175 ERTP 178

Members of this subgroup have two nitrilase domains. This is the first of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Length = 258

>gnl|CDD|143603 cd07579, nitrilase_1_R2, Second nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

 Score = 78.4 bits (193), Expect = 7e-17
 Identities = 61/221 (27%), Positives = 93/221 (42%), Gaps = 38/221 (17%)

Query: 84  KVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAG 143
           ++ + Q + T D   N+A   R   EA   GA+L++ PE+  +     +        +A 
Sbjct: 1   RIAVAQFAPTPDIAGNLATIDRLAAEAKATGAELVVFPELALTGLDDPA-------SEAE 53

Query: 144 GDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDID 203
            D  P+ + L  +AR L++ +V G   E  GD LYN+  + G +G L+  +RK HL    
Sbjct: 54  SDTGPAVSALRRLARRLRLYLVAG-FAEADGDGLYNSAVLVGPEG-LVGTYRKTHL---- 107

Query: 204 IPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICYPGAF 263
                   E    T G+T  + D  +GR+G+ I +D  F E   +   RG  L+  P A 
Sbjct: 108 -----IEPERSWATPGDTWPVYDLPLGRVGLLIGHDALFPEAGRVLALRGCDLLACPAAI 162

Query: 264 N-------------------MTTGPLHWELLQRARATDNQV 285
                                   P HW L  R RA +N V
Sbjct: 163 AIPFVGAHAGTSVPQPYPIPTGADPTHWHLA-RVRAGENNV 202

Members of this subgroup have two nitrilase domains. This is the second of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Length = 279

>gnl|CDD|237577 PRK13981, PRK13981, NAD synthetase; Provisional

 Score = 77.5 bits (192), Expect = 5e-16
 Identities = 63/216 (29%), Positives = 90/216 (41%), Gaps = 32/216 (14%)

Query: 83  FKVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYS------HDSFPV 135
            ++ L QL+ T  D   N A    A  EAA+ GA L+L PE++ S Y         +F  
Sbjct: 1   LRIALAQLNPTVGDIAGNAAKILAAAAEAADAGADLLLFPELFLSGYPPEDLLLRPAF-- 58

Query: 136 YAEDIDAGGDASPSTAMLSEVARLLK--ITIVGGSIPERSGDRLYNTCCVFGSDGKLIAK 193
               + A        A L  +A        ++ G  P R G +LYN   +    G+++A 
Sbjct: 59  ----LAA------CEAALERLAAATAGGPAVLVGH-PWREGGKLYNAAALL-DGGEVLAT 106

Query: 194 HRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQELAMIYGARG 253
           +RK  L     P    F E +    G  P +V+    RIG+ IC DI   E A      G
Sbjct: 107 YRKQDL-----PNYGVFDEKRYFAPGPEPGVVELKGVRIGVPICEDIWNPEPAETLAEAG 161

Query: 254 AHLICYPGA--FNMTTGPLHWELLQRARATDNQVLP 287
           A L+  P A  ++     L   +L RAR  +   LP
Sbjct: 162 AELLLVPNASPYHRGKPDLREAVL-RARVRETG-LP 195

Length = 540

>gnl|CDD|143594 cd07570, GAT_Gln-NAD-synth, Glutamine aminotransferase (GAT, glutaminase) domain of glutamine-dependent NAD synthetases (class 7 and 8 nitrilases)

 Score = 72.1 bits (178), Expect = 9e-15
 Identities = 53/196 (27%), Positives = 77/196 (39%), Gaps = 50/196 (25%)

Query: 84  KVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPE--IWN-SPYSH---DSFPVY 136
           ++ L QL+ T  D E N      AI EA  +GA L++ PE  +    P        F   
Sbjct: 1   RIALAQLNPTVGDLEGNAEKILEAIREAKAQGADLVVFPELSLTGYPPEDLLLRPDF--- 57

Query: 137 AEDIDAGGDASPSTAMLSEVARLLK----ITIVGGSIPERSGDRLYNTCCVFGSDGKLIA 192
              ++A      +   L E+A          +VG  +P R   +LYN   V   +GK++ 
Sbjct: 58  ---LEA------AEEALEELAAATADLDIAVVVG--LPLRHDGKLYNAAAVL-QNGKILG 105

Query: 193 KHRKIHL-----FDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRF----- 242
              K  L     FD          E +  T G+ P ++     RIG+ IC D+       
Sbjct: 106 VVPKQLLPNYGVFD----------EKRYFTPGDKPDVLFFKGLRIGVEICEDLWVPDPPS 155

Query: 243 QELAMIYGARGAHLIC 258
            ELA+     GA LI 
Sbjct: 156 AELAL----AGADLIL 167

Glutamine-dependent NAD synthetases are bifunctional enzymes, which have an N-terminal GAT domain and a C-terminal NAD+ synthetase domain. The GAT domain is a glutaminase (EC 3.5.1.2) which hydrolyses L-glutamine to L-glutamate and ammonia. The ammonia is used by the NAD+ synthetase domain in the ATP-dependent amidation of nicotinic acid adenine dinucleotide. Glutamine aminotransferases are categorized depending on their active site residues into different unrelated classes. This class of GAT domain belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to classes 7 and 8. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Mycobacterium tuberculosis glutamine-dependent NAD+ synthetase forms a homooctamer. Length = 261

>gnl|CDD|177792 PLN00202, PLN00202, beta-ureidopropionase

 Score = 73.0 bits (179), Expect = 1e-14
 Identities = 81/287 (28%), Positives = 118/287 (41%), Gaps = 49/287 (17%)

Query: 21  HLYSPLSRSIF---LGKAKPVFQSPPLIRTHSSNPNPNPIMAS-SSKPEQARAPPALPLP 76
            L+  +SR +     G+   +   P   +  S   + +      ++  EQ RAP  +   
Sbjct: 31  ELFQEVSRLLLGLNCGRPVEMIALPEAAKALSKAHDFDLQAFRFTADKEQLRAPRVV--- 87

Query: 77  TPPVAKFKVGLCQLSVTADKERNIAHARRAI--------EEAAEKGAKLILLPEIWNSPY 128
                  +VGL Q S+        A  +RAI        + A   G  ++ L E W  P+
Sbjct: 88  -------RVGLIQNSIALPTTAPFADQKRAIMDKVKPMIDAAGAAGVNILCLQEAWTMPF 140

Query: 129 S----HDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERS---GDRLYNTC 181
           +       +  +AE +D       ST  L E+AR   + IV   I ER    G+ L+NT 
Sbjct: 141 AFCTREKRWCEFAEPVDG-----ESTKFLQELARKYNMVIVS-PILERDVNHGETLWNTA 194

Query: 182 CVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIV-DTDVGRIGIGICYDI 240
            V G++G +I KHRK H     IP    F ES     G T   V +T  G+I + ICY  
Sbjct: 195 VVIGNNGNIIGKHRKNH-----IPRVGDFNESTYYMEGNTGHPVFETAFGKIAVNICYG- 248

Query: 241 RFQELA-MIYGARGAHLICYPGAFNMTTGPLH---WELLQRARATDN 283
           R   L  + +G  GA ++  P A   T G L    W +  R  A  N
Sbjct: 249 RHHPLNWLAFGLNGAEIVFNPSA---TVGDLSEPMWPIEARNAAIAN 292

Length = 405

>gnl|CDD|178120 PLN02504, PLN02504, nitrilase

 Score = 71.7 bits (176), Expect = 3e-14
 Identities = 58/191 (30%), Positives = 83/191 (43%), Gaps = 32/191 (16%)

Query: 91  SVTADKERNIAHARRAIEEAAEKGAKLILLPEIW----------------NSPYSHDSFP 134
           +V  D    +  A R I EAA  G++L++ PE +                 SP   + F 
Sbjct: 34  TVFYDTPATLDKAERLIAEAAAYGSQLVVFPEAFIGGYPRGSTFGLAIGDRSPKGREDFR 93

Query: 135 VY-AEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAK 193
            Y A  ID  G   P    L+ +A   K+ +V G I ER G  LY T   F   G+ + K
Sbjct: 94  KYHASAIDVPG---PEVDRLAAMAGKYKVYLVMGVI-ERDGYTLYCTVLFFDPQGQYLGK 149

Query: 194 HRKIHLFDIDIPGKITFIESKSLTAGE--TPTIVDTDVGRIGIGICYDIRFQELAMIYGA 251
           HRK+      +P   T +E      G+  T  + DT +G+IG  IC++ R   L     A
Sbjct: 150 HRKL------MP---TALERLIWGFGDGSTIPVYDTPIGKIGAVICWENRMPLLRTAMYA 200

Query: 252 RGAHLICYPGA 262
           +G  + C P A
Sbjct: 201 KGIEIYCAPTA 211

Length = 346

>gnl|CDD|143606 cd07582, nitrilase_4, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

 Score = 70.8 bits (174), Expect = 3e-14
 Identities = 51/217 (23%), Positives = 82/217 (37%), Gaps = 37/217 (17%)

Query: 93  TADKERNIAHARRAIEEA-----AEKGAKLILLPEIWNSPYSHDSFP------VYAED-- 139
            AD   NI      I+ A          +L++LPE     Y+   FP      V+  D  
Sbjct: 16  RADILANIDRINEQIDAAVGFSGPGLPVRLVVLPE-----YALQGFPMGEPREVWQFDKA 70

Query: 140 -IDAGGDASPSTAMLSEVARLLKITIVGG---SIPERSGDRLYNTCCVFGSDGKLIAKHR 195
            ID  G   P T  L E A+ L + I        P+  G   +NT  +    G++I ++R
Sbjct: 71  AIDIPG---PETEALGEKAKELNVYIAANAYERDPDFPG-LYFNTAFIIDPSGEIILRYR 126

Query: 196 KIHLFDIDIPGKIT--------FIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQELAM 247
           K++                   +IE           + DT++G +G   C +  + E+A 
Sbjct: 127 KMN---SLAAEGSPSPHDVWDEYIEVYGYGLDALFPVADTEIGNLGCLACEEGLYPEVAR 183

Query: 248 IYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQ 284
                GA ++    +   +     WE+  RARA +N 
Sbjct: 184 GLAMNGAEVLLRSSSEVPSVELDPWEIANRARALENL 220

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Length = 294

>gnl|CDD|188563 TIGR04048, nitrile_sll0784, putative nitrilase, sll0784 family

 Score = 67.5 bits (165), Expect = 7e-13
 Identities = 56/172 (32%), Positives = 80/172 (46%), Gaps = 28/172 (16%)

Query: 83  FKVGLCQLS-VTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSF---PV--- 135
            +    Q+S V    E  +A    AI EAA KG +LI+ PE +   Y + SF   PV   
Sbjct: 3   VRAAAVQISPVLFSLEGTLAKVLEAIAEAAGKGVQLIVFPETFVPYYPYFSFVQPPVLMG 62

Query: 136 ------YAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGK 189
                 Y + +   G   P T  ++E AR   + +V G + ER    LYNT  +F +DG+
Sbjct: 63  KEHLRLYEQAVVVPG---PVTDAVAEAAREHGMVVVLG-VNERDHGSLYNTQLIFDADGE 118

Query: 190 LIAKHRKIHLFDIDIPGKITFIESKSLTAGETP--TIVDTDVGRIGIGICYD 239
           L+ K RKI       P   T+ E      G+     +VDT VGR+G   C++
Sbjct: 119 LVLKRRKI------TP---TYHERMVWGQGDGAGLKVVDTAVGRVGALACWE 161

This family represents a subfamily of a C-N bond-cleaving hydrolases (see pfam00795). Members occur as part of a cluster of genes in a probable biosynthetic cluster that contains a radical SAM protein, an N-acetyltransferase, a flavoprotein, several proteins of unknown function, and usually a glycosyltransferase. Members are closely related to a characterized aliphatic nitrilase from Rhodopseudomonas rhodochrous J1, for which an active site Cys was found at position 165 [Unknown function, Enzymes of unknown specificity]. Length = 301

>gnl|CDD|143599 cd07575, Xc-1258_like, Xanthomonas campestris XC1258 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases)

 Score = 64.5 bits (158), Expect = 4e-12
 Identities = 59/212 (27%), Positives = 93/212 (43%), Gaps = 40/212 (18%)

Query: 84  KVGLCQLS-VTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDA 142
           K+ L Q   V  D E N+AH    IE+  EK   LI+LPE++ + +S ++  + AE ++ 
Sbjct: 2   KIALIQTDLVWEDPEANLAHFEEKIEQLKEK-TDLIVLPEMFTTGFSMNAEAL-AEPMN- 58

Query: 143 GGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGS-DGKLIAKHRKIHLFD 201
                P+   +   A+     I G S+  + G + YN    F + DG+ +  + K HLF 
Sbjct: 59  ----GPTLQWMKAQAKKKGAAITG-SLIIKEGGKYYNRL-YFVTPDGE-VYHYDKRHLF- 110

Query: 202 IDIPGKITFI-ESKSLTAGETPTIVDTDVGRIGIGICYDIRF------QEL--AMIYGAR 252
                      E K  TAG    IV+    +I + +CYD+RF            ++Y A 
Sbjct: 111 -------RMAGEHKVYTAGNERVIVEYKGWKILLQVCYDLRFPVWSRNTNDYDLLLYVA- 162

Query: 253 GAHLICYPGAFNMTTGPLHWELLQRARATDNQ 284
                 +P           W+ L +ARA +NQ
Sbjct: 163 -----NWPAPRR-----AAWDTLLKARAIENQ 184

Uncharacterized subgroup belonging to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup either represents a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. XC1258 is a homotetramer. Length = 252

>gnl|CDD|143595 cd07571, ALP_N-acyl_transferase, Apolipoprotein N-acyl transferase (class 9 nitrilases)

 Score = 64.5 bits (158), Expect = 4e-12
 Identities = 41/205 (20%), Positives = 74/205 (36%), Gaps = 33/205 (16%)

Query: 93  TADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAM 152
              ++  +        E A++   L++ PE         + P   +          + A 
Sbjct: 18  PEQRQATLDRYLDLTRELADEKPDLVVWPE--------TALPFDLQRDP------DALAR 63

Query: 153 LSEVARLLKITIVGGSI-PERSGDRLYNTCCVFGSDGKLIAKHRKIHL----------FD 201
           L+  AR +   ++ G+   E  G R YN+  +    G ++ ++ K HL            
Sbjct: 64  LARAARAVGAPLLTGAPRREPGGGRYYNSALLLDPGGGILGRYDKHHLVPFGEYVPLRDL 123

Query: 202 IDIPGKITFIESKSLTAGETPTIVDTD-VGRIGIGICYDIRFQELAMIYGARGAHLICYP 260
           +   G +  +     + G  P  +      R+G  ICY+  F EL      +GA L+   
Sbjct: 124 LRFLGLLFDLPMGDFSPGTGPQPLLLGGGVRVGPLICYESIFPELVRDAVRQGADLLVNI 183

Query: 261 ---GAFNMTTGPLHWELLQ--RARA 280
                F  + GP  ++ L   R RA
Sbjct: 184 TNDAWFGDSAGP--YQHLAMARLRA 206

ALP N-acyl transferase (Lnt), is an essential membrane-bound enzyme in gram-negative bacteria, which catalyzes the N-acylation of apolipoproteins, the final step in lipoprotein maturation. This is a reverse amidase (i.e. condensation) reaction. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 9. Length = 270

>gnl|CDD|143591 cd07567, biotinidase_like, biotinidase and vanins (class 4 nitrilases)

 Score = 64.6 bits (158), Expect = 6e-12
 Identities = 51/184 (27%), Positives = 77/184 (41%), Gaps = 49/184 (26%)

Query: 97  ERNIAHARRAIEEAAEKGAKLILLPE--IWNSPYSHDSFPVYAEDIDAGG---------- 144
           E+N+      I+ AA++GA +I+ PE  +    ++      + ED+              
Sbjct: 23  EKNLDIYEEIIKSAAKQGADIIVFPEDGLTGFIFTRFVIYPFLEDVPDPEVNWNPCLDPD 82

Query: 145 --DASPSTAMLSEVARLLKITIVGGSIPER------------SGDRLYNTCCVFGSDGKL 190
             D +     LS  AR   I +V  ++ E+             G   YNT  VF  DG L
Sbjct: 83  RFDYTEVLQRLSCAARENSIYVVA-NLGEKQPCDSSDPHCPPDGRYQYNTNVVFDRDGTL 141

Query: 191 IAKHRKIHLF---DIDIPGK---ITFIESKSLTAGETPTIVDTDVG-RIGIGICYDIRFQ 243
           IA++RK +LF     D+P +   +TF               DTD G   GI  C+DI F+
Sbjct: 142 IARYRKYNLFGEPGFDVPPEPEIVTF---------------DTDFGVTFGIFTCFDILFK 186

Query: 244 ELAM 247
           E A+
Sbjct: 187 EPAL 190

These secondary amidases participate in vitamin recycling. Biotinidase (EC 3.5.1.12) has both a hydrolase and a transferase activity. It hydrolyzes free biocytin or small biotinyl-peptides produced during the proteolytic degradation of biotin-dependent carboxylases, to release free biotin (vitamin H), and it can transfer biotin to acceptor molecules such as histones. Biotinidase deficiency in humans is an autosomal recessive disorder characterized by neurological and cutaneous symptoms. This subgroup includes the three human vanins, vanin1-3. Vanins are ectoenzymes, Vanin-1, and -2 are membrane associated, vanin-3 is secreted. They are pantotheinases (EC 3.5.1.92, pantetheine hydrolase), which convert pantetheine, to pantothenic acid (vitamin B5) and cysteamine (2-aminoethanethiol, a potent anti-oxidant). They are potential targets for therapeutic intervention in inflammatory disorders. Vanin-1 deficient mice lacking free cysteamine are less susceptible to intestinal inflammation, and expression of vanin-1 and -3 is induced as part of the inflammatory-regenerative differentiation program of human epidermis. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 4. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Length = 299

>gnl|CDD|143593 cd07569, DCase, N-carbamyl-D-amino acid amidohydrolase (DCase, class 6 nitrilases)

 Score = 63.9 bits (156), Expect = 1e-11
 Identities = 45/192 (23%), Positives = 82/192 (42%), Gaps = 20/192 (10%)

Query: 96  KERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVY----AEDIDA---GGDASP 148
           +E  +A     +EEAA +GA+L++ PE+  + +    FP +      ++D+       +P
Sbjct: 20  RESVVARLIALLEEAASRGAQLVVFPELALTTF----FPRWYFPDEAELDSFFETEMPNP 75

Query: 149 STAMLSEVARLLKITIVGG---SIPERSGDRLYNTCCVFGSDGKLIAKHRKIHL---FDI 202
            T  L + A+ L I    G      +    R +NT  +    GK++ K+RK+HL    + 
Sbjct: 76  ETQPLFDRAKELGIGFYLGYAELTEDGGVKRRFNTSILVDKSGKIVGKYRKVHLPGHKEP 135

Query: 203 DIPGKITFIESKSLTAGETP-TIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICYPG 261
           +       +E +    G+    +     G +G+ IC D R+ E   + G +G  L+    
Sbjct: 136 EPYRPFQHLEKRYFEPGDLGFPVFRVPGGIMGMCICNDRRWPETWRVMGLQGVELVL--L 193

Query: 262 AFNMTTGPLHWE 273
            +N  T      
Sbjct: 194 GYNTPTHNPPAP 205

DCase hydrolyses N-carbamyl-D-amino acids to produce D-amino acids. It is an important biocatalyst in the pharmaceutical industry, producing useful D-amino acids for example in the preparation of beta-lactam antibiotics. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 6. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Agrobacterium radiobacter DCase forms a tetramer (dimer of dimers). Some DCases may form trimers. Length = 302

>gnl|CDD|223885 COG0815, Lnt, Apolipoprotein N-acyltransferase [Cell envelope biogenesis, outer membrane]

 Score = 54.0 bits (130), Expect = 3e-08
 Identities = 35/188 (18%), Positives = 64/188 (34%), Gaps = 29/188 (15%)

Query: 109 EAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGS 168
              ++   L++ PE         + P                 +   + R+    ++G  
Sbjct: 263 AVDKQKPDLVVWPE--------TALPFDLTRH-----PDALARLAEALQRVGAPLLIGTD 309

Query: 169 IPERSGD--RLYNTCCVFGSDGKLIAKHRKIHL--FDIDIP-GKIT-------FIESKSL 216
           +   +      YN+  V    G+ + ++ K+HL  F   IP  ++         +     
Sbjct: 310 VDGPAPGGGIYYNSVLVLDPGGEGVYRYDKVHLVPFGEYIPFPELLRPLYFFLNLPMSDF 369

Query: 217 TAGETPTIVDTDVG-RIGIGICYDIRFQELAMIYGARGAHLICYP---GAFNMTTGPLHW 272
           + G  P ++    G +I   ICY+  F EL      +GA L+        F  + GP   
Sbjct: 370 SRGPGPQVLLLAGGPKIAPLICYEAIFPELVRASARQGAELLLNLSNDAWFGGSWGPYQH 429

Query: 273 ELLQRARA 280
               R RA
Sbjct: 430 FQQARVRA 437

Length = 518

>gnl|CDD|233016 TIGR00546, lnt, apolipoprotein N-acyltransferase

 Score = 52.7 bits (127), Expect = 7e-08
 Identities = 54/240 (22%), Positives = 90/240 (37%), Gaps = 42/240 (17%)

Query: 68  RAPPALPLPTPPVAKFKVGLCQLSVTADKERNIAHARRAIEE------AAEKGAKLILLP 121
               A P+P P      V L Q ++  D + +       +E        A +   L++ P
Sbjct: 148 ELKSATPVPGP---TLNVALVQPNIPQDLKFDSEGLEAILEILTSLTKQAVEKPDLVVWP 204

Query: 122 EIWNSPYSHDSFPVYAEDIDAGGDASPSTAM--LSEVARLLKITIVGGSIPERSGD--RL 177
           E         +FP   E+       SP      L  +     I I+ G+     G     
Sbjct: 205 E--------TAFPFDLEN-------SPQKLADRLKLLVLSKGIPILIGAPDAVPGGPYHY 249

Query: 178 YNTCCVFGSDGKLIAKHRKIHL--FDIDIP--------GKITFIESKSL-TAGETPTIVD 226
           YN+  +    G+++ ++ K+ L  F   IP         K+ F+ S+   + G  P ++ 
Sbjct: 250 YNSAYLVDPGGEVVQRYDKVKLVPFGEYIPLGFLFKWLSKLFFLLSQEDFSRGPGPQVLK 309

Query: 227 TDVGRIGIGICYDIRFQELAMIYGARGAHLICYP---GAFNMTTGPLHWELLQRARATDN 283
              G+I   ICY+  F +L      +GA L+        F  ++GP     L R RA +N
Sbjct: 310 LPGGKIAPLICYESIFPDLVRASARQGAELLVNLTNDAWFGDSSGPWQHFALARFRAIEN 369

This enzyme transfers the acyl group to lipoproteins in the lgt/lsp/lnt system which is found broadly in bacteria but not in archaea. This model represents one component of the "lipoprotein lgt/lsp/lnt system" genome property [Protein fate, Protein modification and repair]. Length = 391

>gnl|CDD|143590 cd07566, ScNTA1_like, Saccharomyces cerevisiae N-terminal amidase NTA1, and related proteins (class 3 nitrilases)

 Score = 52.3 bits (126), Expect = 7e-08
 Identities = 51/208 (24%), Positives = 82/208 (39%), Gaps = 43/208 (20%)

Query: 95  DKERNIAHA----RRAIEEAAEKGAKLILLPEIWNSPYSHDSF----PVYAEDIDAGGDA 146
             E N++ A     +  + A  K   +++LPE+  + Y+  S     P Y E   +G   
Sbjct: 13  QVEENLSRAWELLDKTKKRAKLKKPDILVLPELALTGYNFHSLEHIKP-YLEPTTSG--- 68

Query: 147 SPSTAMLSEVARLLK-ITIVGGSIPERSGD---RLYNTCCVFGSDGKLIAKHRKIHLFDI 202
            PS     EVA+      ++G   PE+  +   +LYN+  V   +G+++  +RK  L+  
Sbjct: 69  -PSFEWAREVAKKFNCHVVIG--YPEKVDESSPKLYNSALVVDPEGEVVFNYRKSFLYYT 125

Query: 203 DIP--------GKITFIESKSLTAGETPTIVDTDVGRIGIGICYDI---RFQ------EL 245
           D          G  TF    +         VD  + +  IGIC D+   +F+      E 
Sbjct: 126 DEEWGCEENPGGFQTFPLPFAKDDDFDGGSVDVTL-KTSIGICMDLNPYKFEAPFTDFEF 184

Query: 246 AMIYGARGAHLICYPGAFNMTTGPLHWE 273
           A      G  LI  P A+      LH  
Sbjct: 185 ATHVLDNGTELIICPMAW------LHSL 206

Saccharomyces cerevisiae NTA1 functions in the N-end rule protein degradation pathway. It specifically deaminates the N-terminal asparagine and glutamine residues of substrates of this pathway, to aspartate and glutamate respectively, these latter are the destabilizing residues. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 3. Length = 295

>gnl|CDD|234721 PRK00302, lnt, apolipoprotein N-acyltransferase; Reviewed

 Score = 48.3 bits (116), Expect = 2e-06
 Identities = 39/208 (18%), Positives = 71/208 (34%), Gaps = 43/208 (20%)

Query: 73  LPLPTPPVAKFKVGLCQLSVTADKERNIAHARRAIE------EAAEKGAKLILLPEIWNS 126
            P P P +   KV L Q ++    + + A     ++        A   A LI+ PE    
Sbjct: 213 TPAPEPAL---KVALVQGNIPQSLKWDPAGLEATLQKYLDLSRPALGPADLIIWPET--- 266

Query: 127 PYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSI---PERSGDRLYNTCCV 183
                + P   ED+            L ++AR     ++ G+     ++     YN+  V
Sbjct: 267 -----AIPFLLEDL-----PQAFLKALDDLAREKGSALITGAPRAENKQGRYDYYNSIYV 316

Query: 184 FGSDGKLIAKHRKIHL-----FDIDIPGKITFIESK--------SLTAGE-TPTIVDTDV 229
            G    ++ ++ K HL     +   +P +                 + G      +    
Sbjct: 317 LG-PYGILNRYDKHHLVPFGEY---VPLESLLRPLAPFFNLPMGDFSRGPYVQPPLLAKG 372

Query: 230 GRIGIGICYDIRFQELAMIYGARGAHLI 257
            ++   ICY+I F E       +GA L+
Sbjct: 373 LKLAPLICYEIIFPEEVRANVRQGADLL 400

Length = 505

>gnl|CDD|235057 PRK02628, nadE, NAD synthetase; Reviewed

 Score = 45.6 bits (109), Expect = 2e-05
 Identities = 33/112 (29%), Positives = 48/112 (42%), Gaps = 10/112 (8%)

Query: 84  KVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAED--I 140
           +V      V  AD   N A        AA+ G  L + PE+  S YS D   ++ +D  +
Sbjct: 14  RVAAATPKVRVADPAFNAARILALARRAADDGVALAVFPELSLSGYSCDD--LFLQDTLL 71

Query: 141 DAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIA 192
           DA  DA     ++   A L  + +VG   P R   RLYN   V    G+++ 
Sbjct: 72  DAVEDA--LATLVEASADLDPLLVVG--APLRVRHRLYNCAVVI-HRGRILG 118

Length = 679

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	294
PLN02798	286	nitrilase	100.0
cd07572	265	nit Nit1, Nit 2, and related proteins, and the Nit	100.0
cd07587	363	ML_beta-AS mammalian-like beta-alanine synthase (b	100.0
TIGR03381	279	agmatine_aguB N-carbamoylputrescine amidase. Membe	100.0
PRK10438	256	C-N hydrolase family amidase; Provisional	100.0
cd07583	253	nitrilase_5 Uncharacterized subgroup of the nitril	100.0
cd07568	287	ML_beta-AS_like mammalian-like beta-alanine syntha	100.0
PLN00202	405	beta-ureidopropionase	100.0
cd07579	279	nitrilase_1_R2 Second nitrilase domain of an uncha	100.0
cd07567	299	biotinidase_like biotinidase and vanins (class 4 n	100.0
cd07576	254	R-amidase_like Pseudomonas sp. MCI3434 R-amidase a	100.0
cd07564	297	nitrilases_CHs Nitrilases, cyanide hydratase (CH)s	100.0
PLN02504	346	nitrilase	100.0
PLN02747	296	N-carbamolyputrescine amidase	100.0
COG0388	274	Predicted amidohydrolase [General function predict	100.0
cd07584	258	nitrilase_6 Uncharacterized subgroup of the nitril	100.0
cd07581	255	nitrilase_3 Uncharacterized subgroup of the nitril	100.0
cd07580	268	nitrilase_2 Uncharacterized subgroup of the nitril	100.0
cd07573	284	CPA N-carbamoylputrescine amidohydrolase (CPA) (cl	100.0
cd07570	261	GAT_Gln-NAD-synth Glutamine aminotransferase (GAT,	100.0
cd07565	291	aliphatic_amidase aliphatic amidases (class 2 nitr	100.0
cd07574	280	nitrilase_Rim1_like Uncharacterized subgroup of th	100.0
cd07569	302	DCase N-carbamyl-D-amino acid amidohydrolase (DCas	100.0
cd07585	261	nitrilase_7 Uncharacterized subgroup of the nitril	100.0
KOG0807	295	consensus Carbon-nitrogen hydrolase [Amino acid tr	100.0
cd07578	258	nitrilase_1_R1 First nitrilase domain of an unchar	100.0
cd07577	259	Ph0642_like Pyrococcus horikoshii Ph0642 and relat	100.0
cd07575	252	Xc-1258_like Xanthomonas campestris XC1258 and rel	100.0
cd07197	253	nitrilase Nitrilase superfamily, including nitrile	100.0
cd07571	270	ALP_N-acyl_transferase Apolipoprotein N-acyl trans	100.0
cd07586	269	nitrilase_8 Uncharacterized subgroup of the nitril	100.0
cd07582	294	nitrilase_4 Uncharacterized subgroup of the nitril	100.0
PRK13286	345	amiE acylamide amidohydrolase; Provisional	100.0
cd07566	295	ScNTA1_like Saccharomyces cerevisiae N-terminal am	100.0
PRK13287	333	amiF formamidase; Provisional	100.0
KOG0806	298	consensus Carbon-nitrogen hydrolase [Amino acid tr	100.0
PRK13981	540	NAD synthetase; Provisional	100.0
TIGR00546	391	lnt apolipoprotein N-acyltransferase. This enzyme	100.0
PRK02628	679	nadE NAD synthetase; Reviewed	100.0
PF00795	186	CN_hydrolase: Carbon-nitrogen hydrolase The Prosit	100.0
PLN02339	700	NAD+ synthase (glutamine-hydrolysing)	100.0
PRK00302	505	lnt apolipoprotein N-acyltransferase; Reviewed	100.0
PRK12291	418	apolipoprotein N-acyltransferase; Reviewed	99.97
KOG0805	337	consensus Carbon-nitrogen hydrolase [Amino acid tr	99.96
COG0815	518	Lnt Apolipoprotein N-acyltransferase [Cell envelop	99.94
PRK13825	388	conjugal transfer protein TraB; Provisional	99.94
KOG0808	387	consensus Carbon-nitrogen hydrolase [Amino acid tr	99.87
KOG2303	706	consensus Predicted NAD synthase, contains CN hydr	99.51
cd07565	291	aliphatic_amidase aliphatic amidases (class 2 nitr	80.93

>PLN02798 nitrilase

Probab=100.00  E-value=7e-41  Score=307.24  Aligned_cols=210  Identities=34%  Similarity=0.512  Sum_probs=183.0

Q ss_pred             CCCCceEEEEEeccccccHHHHHHHHHHHHHHHHHCCCcEEEcCCC-CCCCCCCCCccchhhhhccCCCCcHHHHHHHHH
Q 022660           78 PPVAKFKVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEI-WNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEV  156 (294)
Q Consensus        78 ~~~~~~rValvQ~~v~~d~~~n~~~i~~~i~~A~~~gadLVVfPE~-~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~l  156 (294)
                      .+.++||||++|+...+|.+.|++++++++++|+++|+|||||||+ .++||...+...+.+.     ..++..+.|+++
T Consensus         6 ~~~~~~ria~~Q~~~~~d~~~N~~~~~~~i~~A~~~gadlvvfPE~~~~~g~~~~~~~~~~~~-----~~~~~~~~l~~~   80 (286)
T PLN02798          6 TAGSSVRVAVAQMTSTNDLAANFATCSRLAKEAAAAGAKLLFLPECFSFIGDKDGESLAIAEP-----LDGPIMQRYRSL   80 (286)
T ss_pred             cccCccEEEEEEccCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCCccccCcCchhhhhhccc-----CCCHHHHHHHHH
Confidence            3446799999999988999999999999999999999999999998 4577764433222222     234689999999


Q ss_pred             HHhcCcEEEEeeeeee--eCCeeEEEEEEEccCCcEEEEEeecccCCCCCCCccccccccCccCCCCCeEEEeCCceEEE
Q 022660          157 ARLLKITIVGGSIPER--SGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGI  234 (294)
Q Consensus       157 A~~~~i~Iv~Gs~~~~--~~~~~yNsa~vi~~~G~il~~y~K~~L~~~~~P~~~~f~E~~~f~~G~~~~v~~~~~grigi  234 (294)
                      |+++++.|++|..+++  +++++||++++++++|+++++|+|+||+++.+|....+.|..+|.+|+++.+|+++++|+|+
T Consensus        81 A~~~~i~iv~G~~~~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~L~~~~~p~~~~~~e~~~~~~G~~~~v~~~~~~k~g~  160 (286)
T PLN02798         81 ARESGLWLSLGGFQEKGPDDSHLYNTHVLIDDSGEIRSSYRKIHLFDVDVPGGPVLKESSFTAPGKTIVAVDSPVGRLGL  160 (286)
T ss_pred             HHHcCeEEEEeeeEcccCCCCceEEEEEEECCCCCEEEEEEEEEeccccCCCCCcccccccccCCCeeeEEecCCceEEE
Confidence            9999999998866655  46789999999999999999999999988777876666788889999999999999999999


Q ss_pred             eeeccCcCcHHHHHHH-HCCCeEEEEcCCCCCCCCHHHHHHHHHHHHHHhCCeeEeecc
Q 022660          235 GICYDIRFQELAMIYG-ARGAHLICYPGAFNMTTGPLHWELLQRARATDNQVLPHSPFV  292 (294)
Q Consensus       235 ~ICyD~~fpe~~r~la-~~Gadlil~ps~~~~~~~~~~~~~l~~~RAiEn~~~vv~an~  292 (294)
                      +||||.+||+++|.++ ++|||+|++|++|+...+..+|..+.++||+||++|||++|.
T Consensus       161 ~IC~D~~fpe~~r~~a~~~Gadlil~ps~~~~~~~~~~~~~~~~~rAien~~~vv~an~  219 (286)
T PLN02798        161 TVCYDLRFPELYQQLRFEHGAQVLLVPSAFTKPTGEAHWEVLLRARAIETQCYVIAAAQ  219 (286)
T ss_pred             EEEEcccChHHHHHHHHhCCCcEEEECCcCCCCCcHHHHHHHHHHHHHHhCCEEEEecc
Confidence            9999999999999998 999999999999887667789999999999999999999985

>cd07572 nit Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases)

Probab=100.00  E-value=6.8e-41  Score=302.90  Aligned_cols=206  Identities=50%  Similarity=0.824  Sum_probs=184.1

Q ss_pred             EEEEEeccccccHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHhcCcE
Q 022660           84 KVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKIT  163 (294)
Q Consensus        84 rValvQ~~v~~d~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~  163 (294)
                      |||++|+++.+|.+.|++++++++++|++.|+|||||||++++||...+......   .....++..+.|+++|++++++
T Consensus         1 kia~~Q~~~~~d~~~n~~~~~~~i~~A~~~g~dlivfPE~~l~g~~~~~~~~~~~---~~~~~~~~~~~l~~~a~~~~i~   77 (265)
T cd07572           1 RVALIQMTSTADKEANLARAKELIEEAAAQGAKLVVLPECFNYPGGTDAFKLALA---EEEGDGPTLQALSELAKEHGIW   77 (265)
T ss_pred             CEEEEEeeCCCCHHHHHHHHHHHHHHHHHCCCCEEECCccccCcCcchhhhhhhh---ccccCChHHHHHHHHHHHCCeE
Confidence            6999999988999999999999999999999999999999999998655433210   1112346899999999999999


Q ss_pred             EEEeeeeeeeC--CeeEEEEEEEccCCcEEEEEeecccCCCCCCCccccccccCccCCCCCeEEEeCCceEEEeeeccCc
Q 022660          164 IVGGSIPERSG--DRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIR  241 (294)
Q Consensus       164 Iv~Gs~~~~~~--~~~yNsa~vi~~~G~il~~y~K~~L~~~~~P~~~~f~E~~~f~~G~~~~v~~~~~grigi~ICyD~~  241 (294)
                      |++|+++++++  +++||++++++++|+++.+|+|+||+++++|....|.|..+|.+|+.+.+|+++++|+|++||||.+
T Consensus        78 i~~G~~~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~~l~~~~~p~~~~~~e~~~~~~G~~~~~~~~~~~~ig~~IC~D~~  157 (265)
T cd07572          78 LVGGSIPERDDDDGKVYNTSLVFDPDGELVARYRKIHLFDVDVPGGISYRESDTLTPGDEVVVVDTPFGKIGLGICYDLR  157 (265)
T ss_pred             EEEeeeccccCCCCcEEEEEEEECCCCeEEeEEeeEEeecccCCCCcccccccccCCCCcceEEecCCceEEEEEEeccC
Confidence            99887777766  8999999999999999999999999887778776788889999999999999999999999999999


Q ss_pred             CcHHHHHHHHCCCeEEEEcCCCCCCCCHHHHHHHHHHHHHHhCCeeEeecc
Q 022660          242 FQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQVLPHSPFV  292 (294)
Q Consensus       242 fpe~~r~la~~Gadlil~ps~~~~~~~~~~~~~l~~~RAiEn~~~vv~an~  292 (294)
                      ||++++.++++|||+|++|++|+...+..+|..+.++||+||++|++++|.
T Consensus       158 ~pe~~r~~~~~gadli~~p~~~~~~~~~~~~~~~~~~rA~e~~~~vv~~n~  208 (265)
T cd07572         158 FPELARALARQGADILTVPAAFTMTTGPAHWELLLRARAIENQCYVVAAAQ  208 (265)
T ss_pred             cHHHHHHHHHCCCCEEEECCCCCCCcchHHHHHHHHHHHHhcCCEEEEEcc
Confidence            999999999999999999999887777889999999999999999999985

This subgroup includes mammalian Nit1 and Nit2, the Nit1-like domain of the invertebrate NitFhit, and various uncharacterized bacterial and archaeal Nit-like proteins. Nit1 and Nit2 are candidate tumor suppressor proteins. In NitFhit, the Nit1-like domain is encoded as a fusion protein with the non-homologous tumor suppressor, fragile histidine triad (Fhit). Mammalian Nit1 and Fhit may affect distinct signal pathways, and both may participate in DNA damage-induced apoptosis. Nit1 is a negative regulator in T cells. Overexpression of Nit2 in HeLa cells leads to a suppression of cell growth through cell cycle arrest in G2. These Nit proteins and the Nit1-like domain of NitFhit belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in t

>cd07587 ML_beta-AS mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases)

Probab=100.00  E-value=1.1e-40  Score=315.22  Aligned_cols=210  Identities=28%  Similarity=0.449  Sum_probs=179.8

Q ss_pred             CCCCCCCCCceEEEEEecccc--------ccHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCc-----cchhhh
Q 022660           73 LPLPTPPVAKFKVGLCQLSVT--------ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSF-----PVYAED  139 (294)
Q Consensus        73 ~~~~~~~~~~~rValvQ~~v~--------~d~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~-----~~~~~~  139 (294)
                      .+..+.+.+.||||++|+++.        +|.+.|++++.+++++|+++|+|||||||++++||.....     ..+++.
T Consensus        54 ~~~~~~~~~~~rIAlvQ~~~~~~~~~p~~~d~~~nl~ki~~~i~~Aa~~gadLivfPE~~l~g~~~~~~~~~~~~~~ae~  133 (363)
T cd07587          54 APEQTRPPRIVRVGLIQNKIVLPTTAPIAEQREAIHDRIKKIIEAAAMAGVNIICFQEAWTMPFAFCTREKLPWCEFAES  133 (363)
T ss_pred             ChhhcCCCceEEEEEEeccccccccCccccCHHHHHHHHHHHHHHHHHcCCCEEEccccccCCccccccccchHHHHhhc
Confidence            344455666899999998753        4899999999999999999999999999999999864221     122222


Q ss_pred             hccCCCCcHHHHHHHHHHHhcCcEEEEeeeeeeeC---CeeEEEEEEEccCCcEEEEEeecccCCCCCCCccccccccCc
Q 022660          140 IDAGGDASPSTAMLSEVARLLKITIVGGSIPERSG---DRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSL  216 (294)
Q Consensus       140 ~~~~~~~~~~~~~l~~lA~~~~i~Iv~Gs~~~~~~---~~~yNsa~vi~~~G~il~~y~K~~L~~~~~P~~~~f~E~~~f  216 (294)
                      .    .+++.++.|+++|++++++|++| +.++++   +++||++++|+++|+++++|+|+||++.+     .|.|..+|
T Consensus       134 ~----~~g~~~~~l~~lAk~~~i~Iv~g-i~e~~~~~~~~~yNta~vi~~~G~ilg~yrK~hL~~~~-----~~~E~~~f  203 (363)
T cd07587         134 A----EDGPTTKFCQELAKKYNMVIVSP-ILERDEEHGDTIWNTAVVISNSGNVLGKSRKNHIPRVG-----DFNESTYY  203 (363)
T ss_pred             c----CCChHHHHHHHHHHHcCcEEEEe-eeeeecCCCCcEEEEEEEECCCCCEEeeeeeEecCCCC-----CccceeEE
Confidence            2    23689999999999999999987 666653   68999999999999999999999996532     56788999


Q ss_pred             cCCCC-CeEEEeCCceEEEeeeccCcCcHHHHHHHHCCCeEEEEcCCCCCCCCHHHHHHHHHHHHHHhCCeeEeecc
Q 022660          217 TAGET-PTIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQVLPHSPFV  292 (294)
Q Consensus       217 ~~G~~-~~v~~~~~grigi~ICyD~~fpe~~r~la~~Gadlil~ps~~~~~~~~~~~~~l~~~RAiEn~~~vv~an~  292 (294)
                      .+|+. +.+|+++++|||++||||.+|||++|.++.+|||++++|++|+...+..+|..++++||+||++|||++|.
T Consensus       204 ~~G~~~~~vf~t~~griG~~ICyD~~fPe~~r~la~~GAdiil~Psa~~~~~~~~~w~~~~rarAieN~~fVv~~Nr  280 (363)
T cd07587         204 MEGNTGHPVFETQFGKIAVNICYGRHHPLNWLMYGLNGAEIVFNPSATVGALSEPMWPIEARNAAIANSYFTVGINR  280 (363)
T ss_pred             ecCCCCCceEEcCCceEEEEEecccCCcHHHHHHHHcCCcEEEECCCcCCCCchHHHHHHHHHHHHhcCcEEEEecc
Confidence            99985 78999999999999999999999999999999999999999876655679999999999999999999985

This subgroup includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric

>TIGR03381 agmatine_aguB N-carbamoylputrescine amidase

Probab=100.00  E-value=5.5e-40  Score=299.23  Aligned_cols=203  Identities=30%  Similarity=0.474  Sum_probs=173.1

Q ss_pred             eEEEEEeccccccHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccc-hhhhhccCCCCcHHHHHHHHHHHhcC
Q 022660           83 FKVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPV-YAEDIDAGGDASPSTAMLSEVARLLK  161 (294)
Q Consensus        83 ~rValvQ~~v~~d~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~~-~~~~~~~~~~~~~~~~~l~~lA~~~~  161 (294)
                      ||||++|+++.+|.+.|++++.+++++|+++|+|||||||++++||...+... +.+. ......+++++.++++|++++
T Consensus         1 ~~ia~~Q~~~~~d~~~Nl~~~~~~i~~A~~~gadlivfPE~~~~gy~~~~~~~~~~~~-a~~~~~~~~~~~l~~~a~~~~   79 (279)
T TIGR03381         1 VTVAALQMACSDDVETNIARAERLVREAAARGAQIILLPELFEGPYFCKDQDEDYFAL-AQPVEGHPAIKRFQALAKELG   79 (279)
T ss_pred             CEEEEEEeeccCCHHHHHHHHHHHHHHHHHCCCCEEEcccccCCCCcCCccccchHhh-cCcCCCChHHHHHHHHHHHcC
Confidence            69999999988999999999999999999999999999999999997644211 1111 000112478999999999999


Q ss_pred             cEEEEeeeeeeeCCeeEEEEEEEccCCcEEEEEeecccCCCCCCCccccccccCccCCC-CCeEEEeCCceEEEeeeccC
Q 022660          162 ITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGE-TPTIVDTDVGRIGIGICYDI  240 (294)
Q Consensus       162 i~Iv~Gs~~~~~~~~~yNsa~vi~~~G~il~~y~K~~L~~~~~P~~~~f~E~~~f~~G~-~~~v~~~~~grigi~ICyD~  240 (294)
                      ++|++| +++++++++||++++++++|+++++|+|+||+.     ...+.|..+|++|+ .+.+|+++++|+|++||||.
T Consensus        80 i~i~~g-~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~-----~~~~~E~~~f~~G~~~~~~f~~~~~~ig~~IC~D~  153 (279)
T TIGR03381        80 VVIPVS-FFEKAGNAYYNSLAMIDADGSVLGVYRKSHIPD-----GPGYQEKFYFRPGDTGFKVWDTRYGRIGVGICWDQ  153 (279)
T ss_pred             cEEEEe-eeecCCCceEEeEEEECCCCCEEEEEEeeecCC-----CCCcccceeEccCCCCCceEecCCceEEEEEEcCC
Confidence            999998 677778899999999999999999999999953     12456778899998 48999999999999999999


Q ss_pred             cCcHHHHHHHHCCCeEEEEcCCCCCC------CCHHHHHHHHHHHHHHhCCeeEeecc
Q 022660          241 RFQELAMIYGARGAHLICYPGAFNMT------TGPLHWELLQRARATDNQVLPHSPFV  292 (294)
Q Consensus       241 ~fpe~~r~la~~Gadlil~ps~~~~~------~~~~~~~~l~~~RAiEn~~~vv~an~  292 (294)
                      +|||.+|.++++|||+|++|++|+..      ....+|..+.++||+||++|+|++|.
T Consensus       154 ~fpe~~r~~a~~ga~lil~ps~~~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv~an~  211 (279)
T TIGR03381       154 WFPETARAMALMGAEVLFYPTAIGSEPHDPDLDSRDHWQRVMQGHAAANLVPVVAANR  211 (279)
T ss_pred             cChHHHHHHHHcCCCEEEecCccCCCCcccccccHHHHHHHHHHHHHhCCCeEEEEec
Confidence            99999999999999999999997543      23468888889999999999999985

Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one.

>PRK10438 C-N hydrolase family amidase; Provisional

Probab=100.00  E-value=9.4e-40  Score=295.43  Aligned_cols=192  Identities=24%  Similarity=0.348  Sum_probs=163.8

Q ss_pred             CCceEEEEEecccc-ccHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHH
Q 022660           80 VAKFKVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVAR  158 (294)
Q Consensus        80 ~~~~rValvQ~~v~-~d~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~  158 (294)
                      |++||||++|+++. +|.+.|++++.++++++  .|+|||||||++++||...+..   +.+.    .++..+.|+++|+
T Consensus         1 m~~mkia~~Q~~~~~~d~~~Nl~~~~~~i~~a--~gadLivfPE~~~~Gy~~~~~~---~~~~----~~~~~~~l~~~A~   71 (256)
T PRK10438          1 MSGLKITLLQQPLVWMDGPANLRHFDRQLEGI--TGRDVIVLPEMFTTGFAMEAAA---SSLP----QDDVVAWMTAKAQ   71 (256)
T ss_pred             CCCCEEEEEEecCccCCHHHHHHHHHHHHHhc--cCCCEEEeCCcccCCCcccchh---hccc----cchHHHHHHHHHH
Confidence            34699999999975 89999999999999875  7999999999999999764321   1111    2368899999999


Q ss_pred             hcCcEEEEeeeeeeeCCeeEEEEEEEccCCcEEEEEeecccCCCCCCCccccccccCccCCCCCeEEEeCCceEEEeeec
Q 022660          159 LLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICY  238 (294)
Q Consensus       159 ~~~i~Iv~Gs~~~~~~~~~yNsa~vi~~~G~il~~y~K~~L~~~~~P~~~~f~E~~~f~~G~~~~v~~~~~grigi~ICy  238 (294)
                      ++++.| +|+..+++++++|||+++++++|. +..|+|+||+++       +.|..+|++|+++.+|+++++|+|++|||
T Consensus        72 ~~~~~i-~g~~~~~~~~~~~Nsa~vi~~~G~-~~~y~K~hL~~~-------~~E~~~f~~G~~~~v~~~~~~~iG~~ICy  142 (256)
T PRK10438         72 QTNALI-AGSVALQTESGAVNRFLLVEPGGT-VHFYDKRHLFRM-------ADEHLHYKAGNARVIVEWRGWRILPLVCY  142 (256)
T ss_pred             HcCeEE-EEEEEEecCCCeEEEEEEEcCCCC-EEEEeeeecCCC-------CCccceecCCCCceEEEECCEEEEEEEEe
Confidence            999855 454555566789999999999997 579999999863       36788999999999999999999999999


Q ss_pred             cCcCcHHHHHHHHCCCeEEEEcCCCCCCCCHHHHHHHHHHHHHHhCCeeEeecc
Q 022660          239 DIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQVLPHSPFV  292 (294)
Q Consensus       239 D~~fpe~~r~la~~Gadlil~ps~~~~~~~~~~~~~l~~~RAiEn~~~vv~an~  292 (294)
                      |++|||++|.+  +|+|+|++|++|+.. ...+|..+.++||+||++|||++|.
T Consensus       143 D~~fPe~~r~l--~gad~i~~~s~~~~~-~~~~~~~~~~aRA~En~~~vv~~n~  193 (256)
T PRK10438        143 DLRFPVWSRNR--NDYDLALYVANWPAP-RSLHWQTLLTARAIENQAYVAGCNR  193 (256)
T ss_pred             ecCCHHHHHhh--cCCCEEEEecCCCCC-chHHHHHHHHHHHHhcCcEEEEecc
Confidence            99999999986  799999999998754 4468999999999999999999995

>cd07583 nitrilase_5 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

Probab=100.00  E-value=1e-39  Score=293.60  Aligned_cols=196  Identities=41%  Similarity=0.661  Sum_probs=174.5

Q ss_pred             EEEEEecccc-ccHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHhcCc
Q 022660           84 KVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKI  162 (294)
Q Consensus        84 rValvQ~~v~-~d~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i  162 (294)
                      |||++|+++. .|.+.|++++.+++++|++.|+|||||||++++||...+....+.     ...++..+.++++|+++++
T Consensus         1 rva~~Q~~~~~~d~~~n~~~i~~~i~~A~~~g~dlvv~PE~~l~g~~~~~~~~~~~-----~~~~~~~~~l~~~a~~~~~   75 (253)
T cd07583           1 KIALIQLDIVWGDPEANIERVESLIEEAAAAGADLIVLPEMWNTGYFLDDLYELAD-----EDGGETVSFLSELAKKHGV   75 (253)
T ss_pred             CEEEEEeecCcCCHHHHHHHHHHHHHHHHHCCCCEEEcCCccCCCCChhhHHhhhc-----ccCchHHHHHHHHHHHcCc
Confidence            6999999987 899999999999999999999999999999999997655332211     1235799999999999999


Q ss_pred             EEEEeeeeeeeCCeeEEEEEEEccCCcEEEEEeecccCCCCCCCccccccccCccCCCCCeEEEeCCceEEEeeeccCcC
Q 022660          163 TIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRF  242 (294)
Q Consensus       163 ~Iv~Gs~~~~~~~~~yNsa~vi~~~G~il~~y~K~~L~~~~~P~~~~f~E~~~f~~G~~~~v~~~~~grigi~ICyD~~f  242 (294)
                      ++++|+.++++++++||++++++++|+++.+|+|+||+++       +.|..+|.+|+++.+|+++++|+|++||||.+|
T Consensus        76 ~iv~G~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~~l~~~-------~~e~~~~~~G~~~~v~~~~~~rig~~IC~D~~~  148 (253)
T cd07583          76 NIVAGSVAEKEGGKLYNTAYVIDPDGELIATYRKIHLFGL-------MGEDKYLTAGDELEVFELDGGKVGLFICYDLRF  148 (253)
T ss_pred             EEEeceEEecCCCcEEEEEEEECCCCcEEEEEeeeeCCCC-------cCchhhccCCCCceEEEeCCeEEEEEEEecccc
Confidence            9999976677778999999999999999999999999874       257788999999999999999999999999999


Q ss_pred             cHHHHHHHHCCCeEEEEcCCCCCCCCHHHHHHHHHHHHHHhCCeeEeecc
Q 022660          243 QELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQVLPHSPFV  292 (294)
Q Consensus       243 pe~~r~la~~Gadlil~ps~~~~~~~~~~~~~l~~~RAiEn~~~vv~an~  292 (294)
                      ||+.|.++++|||+|++|++|+.. ...+|..+.++||+||++|++++|.
T Consensus       149 pe~~r~~~~~ga~ll~~ps~~~~~-~~~~~~~~~~~rA~en~~~vv~~n~  197 (253)
T cd07583         149 PELFRKLALEGAEILFVPAEWPAA-RIEHWRTLLRARAIENQAFVVACNR  197 (253)
T ss_pred             HHHHHHHHHcCCcEEEECCCCCCC-chHHHHHHHHHHHHHhCCEEEEEcC
Confidence            999999999999999999997653 4578888889999999999999985

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>cd07568 ML_beta-AS_like mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases)

Probab=100.00  E-value=3.4e-39  Score=295.71  Aligned_cols=205  Identities=31%  Similarity=0.411  Sum_probs=173.3

Q ss_pred             CceEEEEEecccc--------ccHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCcc-chhhhhccCCCCcHHHH
Q 022660           81 AKFKVGLCQLSVT--------ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFP-VYAEDIDAGGDASPSTA  151 (294)
Q Consensus        81 ~~~rValvQ~~v~--------~d~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~-~~~~~~~~~~~~~~~~~  151 (294)
                      ++||||++|+++.        ++.+.|++++.+++++|++.|+|||||||++++||...+.. ...+.. ....++++.+
T Consensus         2 ~~~rva~vQ~~~~~~~~~~~~~~~~~nl~~~~~~i~~A~~~gadlvvfPE~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~   80 (287)
T cd07568           2 RIVRVGLIQASNVIPTDAPIEKQKEAMIQKHVTMIREAAEAGAQIVCLQEIFYGPYFCAEQDTKWYEFA-EEIPNGPTTK   80 (287)
T ss_pred             ceEEEEEEEeecccccccccccCHHHHHHHHHHHHHHHHHcCCcEEEcccccCCCCCccccccchhhhc-ccCCCChHHH
Confidence            4689999999865        78899999999999999999999999999999998643311 111110 0011357899


Q ss_pred             HHHHHHHhcCcEEEEeeeeeee-CCeeEEEEEEEccCCcEEEEEeecccCCCCCCCccccccccCccCCC-CCeEEEeCC
Q 022660          152 MLSEVARLLKITIVGGSIPERS-GDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGE-TPTIVDTDV  229 (294)
Q Consensus       152 ~l~~lA~~~~i~Iv~Gs~~~~~-~~~~yNsa~vi~~~G~il~~y~K~~L~~~~~P~~~~f~E~~~f~~G~-~~~v~~~~~  229 (294)
                      .|+++|++++++|++| +.+++ ++++||++++|+++|+++++|+|+||++++     .+.|..+|.+|+ ...+|++++
T Consensus        81 ~l~~~a~~~~i~ii~g-~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~~~-----~~~e~~~f~~G~~~~~~f~~~~  154 (287)
T cd07568          81 RFAALAKEYNMVLILP-IYEKEQGGTLYNTAAVIDADGTYLGKYRKNHIPHVG-----GFWEKFYFRPGNLGYPVFDTAF  154 (287)
T ss_pred             HHHHHHHHCCEEEEEE-eEEEcCCCcEEEEEEEECCCCcEeeEEeeeecCCCC-----ccceeeeecCCCCCCceEEcCC
Confidence            9999999999999998 45554 578999999999999999999999997653     466788899998 589999999


Q ss_pred             ceEEEeeeccCcCcHHHHHHHHCCCeEEEEcCCCCCCCCHHHHHHHHHHHHHHhCCeeEeecc
Q 022660          230 GRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQVLPHSPFV  292 (294)
Q Consensus       230 grigi~ICyD~~fpe~~r~la~~Gadlil~ps~~~~~~~~~~~~~l~~~RAiEn~~~vv~an~  292 (294)
                      +|+|++||||.+||+++|.++++|||+|++|++++......+|..+.++||+||++|++.+|.
T Consensus       155 ~~iG~~ICyD~~fpe~~r~la~~Ga~li~~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~~N~  217 (287)
T cd07568         155 GKIGVYICYDRHFPEGWRALGLNGAEIVFNPSATVAGLSEYLWKLEQPAAAVANGYFVGAINR  217 (287)
T ss_pred             ceEEEEEEecccCchHHHHHHHCCCeEEEECCcCCCCCchhhhHHHHHHHHHHCCcEEEEecc
Confidence            999999999999999999999999999999999875545568888889999999999999984

This family includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This family belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric

>PLN00202 beta-ureidopropionase

Probab=100.00  E-value=3.1e-39  Score=308.67  Aligned_cols=202  Identities=30%  Similarity=0.484  Sum_probs=176.2

Q ss_pred             CCceEEEEEecccc--------ccHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCC----CccchhhhhccCCCCc
Q 022660           80 VAKFKVGLCQLSVT--------ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHD----SFPVYAEDIDAGGDAS  147 (294)
Q Consensus        80 ~~~~rValvQ~~v~--------~d~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~----~~~~~~~~~~~~~~~~  147 (294)
                      .++||||++|.++.        .+.+.|++++.+++++|++.|+|||||||++++||...    .+.+.++.+     ++
T Consensus        84 ~~~~rValiQ~~i~~~~~~~~~~~~~~nl~~~~~li~~Aa~~gadLVvfPE~~~~g~~~~~~~~~~~~~ae~~-----~g  158 (405)
T PLN00202         84 PRVVRVGLIQNSIALPTTAPFADQKRAIMDKVKPMIDAAGAAGVNILCLQEAWTMPFAFCTREKRWCEFAEPV-----DG  158 (405)
T ss_pred             CCeEEEEEEecccccCCCCcccCCHHHHHHHHHHHHHHHHHCCCCEEEecchhccccccccccchHHHHhhhC-----CC
Confidence            56799999999963        58999999999999999999999999999999998642    122333332     35


Q ss_pred             HHHHHHHHHHHhcCcEEEEeeeeeee---CCeeEEEEEEEccCCcEEEEEeecccCCCCCCCccccccccCccCCCC-Ce
Q 022660          148 PSTAMLSEVARLLKITIVGGSIPERS---GDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGET-PT  223 (294)
Q Consensus       148 ~~~~~l~~lA~~~~i~Iv~Gs~~~~~---~~~~yNsa~vi~~~G~il~~y~K~~L~~~~~P~~~~f~E~~~f~~G~~-~~  223 (294)
                      +..+.++++|++++++|++| +.+++   ++++|||+++|+++|+++++|+|+||++++     .|.|..+|.+|+. ..
T Consensus       159 ~~~~~l~~lA~~~~i~Iv~G-~~e~~~~~~~~~yNSa~vI~~~G~iig~YrKiHL~~~g-----~~~E~~~f~~G~~g~~  232 (405)
T PLN00202        159 ESTKFLQELARKYNMVIVSP-ILERDVNHGETLWNTAVVIGNNGNIIGKHRKNHIPRVG-----DFNESTYYMEGNTGHP  232 (405)
T ss_pred             HHHHHHHHHHHHCCeEEEEE-eeeeecCCCCcEEEEEEEECCCCcEEEEEecccCCCCC-----CccccceeecCCCCce
Confidence            78999999999999999998 66654   357999999999999999999999998754     4678889999986 68


Q ss_pred             EEEeCCceEEEeeeccCcCcHHHHHHHHCCCeEEEEcCCCCCCCCHHHHHHHHHHHHHHhCCeeEeecc
Q 022660          224 IVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQVLPHSPFV  292 (294)
Q Consensus       224 v~~~~~grigi~ICyD~~fpe~~r~la~~Gadlil~ps~~~~~~~~~~~~~l~~~RAiEn~~~vv~an~  292 (294)
                      +|++++||||++||||.+|||++|.++.+|||+|++|++|+...+..+|..++++||+||++||+++|.
T Consensus       233 vf~t~~gkiGv~ICYD~~FPE~~r~la~~GAdiIl~Psa~~~~~~~~~w~~~~raRAiEN~~fvv~aNr  301 (405)
T PLN00202        233 VFETAFGKIAVNICYGRHHPLNWLAFGLNGAEIVFNPSATVGDLSEPMWPIEARNAAIANSYFVGSINR  301 (405)
T ss_pred             EEEeCCCeEEEEEccccccHHHHHHHHHCCCcEEEECCCCCCccCHHHHHHHHHHHHHhcCCEEEEecc
Confidence            999999999999999999999999999999999999999876656679999999999999999999995

>cd07579 nitrilase_1_R2 Second nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

Probab=100.00  E-value=1.6e-39  Score=297.55  Aligned_cols=190  Identities=34%  Similarity=0.563  Sum_probs=165.3

Q ss_pred             EEEEEeccccccHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHhcCcE
Q 022660           84 KVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKIT  163 (294)
Q Consensus        84 rValvQ~~v~~d~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~  163 (294)
                      |||++|+++..|.+.|++++.+++++|++.|+|||||||++++||....  ..++.     ..++.++.|+++|++++++
T Consensus         1 ria~~Q~~~~~d~~~Nl~~~~~~i~~A~~~gadlvvfPE~~ltG~~~~~--~~~~~-----~~~~~~~~l~~lA~~~~i~   73 (279)
T cd07579           1 RIAVAQFAPTPDIAGNLATIDRLAAEAKATGAELVVFPELALTGLDDPA--SEAES-----DTGPAVSALRRLARRLRLY   73 (279)
T ss_pred             CEEEEeccCccCHHHHHHHHHHHHHHHHHCCCCEEEeCCccccCCCChH--Hhccc-----CCCHHHHHHHHHHHHcCeE
Confidence            6999999987799999999999999999999999999999999986431  11111     2357899999999999999


Q ss_pred             EEEeeeeeeeCCeeEEEEEEEccCCcEEEEEeecccCCCCCCCccccccccCccCCCCCeEEEeCCceEEEeeeccCcCc
Q 022660          164 IVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQ  243 (294)
Q Consensus       164 Iv~Gs~~~~~~~~~yNsa~vi~~~G~il~~y~K~~L~~~~~P~~~~f~E~~~f~~G~~~~v~~~~~grigi~ICyD~~fp  243 (294)
                      |++| .++++++++||++++++++| ++.+|+|+||++         .|..+|.+|+++.+|+++++|+|++||||++||
T Consensus        74 iv~G-~~~~~~~~~yNs~~vi~~~G-~i~~Y~K~hL~~---------~E~~~f~~G~~~~v~~~~~~kiG~~ICyD~~fP  142 (279)
T cd07579          74 LVAG-FAEADGDGLYNSAVLVGPEG-LVGTYRKTHLIE---------PERSWATPGDTWPVYDLPLGRVGLLIGHDALFP  142 (279)
T ss_pred             EEEe-ceEccCCcEEEEEEEEeCCe-eEEEEecccCCC---------cchhhccCCCCCeeEEcCceeEEEEEeccccCc
Confidence            9999 56777789999999999999 679999999965         467789999999999999999999999999999


Q ss_pred             HHHHHHHHCCCeEEEEcCCCCC-----------------CCC--HHHHHHHHHHHHHHhCCeeEeecc
Q 022660          244 ELAMIYGARGAHLICYPGAFNM-----------------TTG--PLHWELLQRARATDNQVLPHSPFV  292 (294)
Q Consensus       244 e~~r~la~~Gadlil~ps~~~~-----------------~~~--~~~~~~l~~~RAiEn~~~vv~an~  292 (294)
                      |++|.++++|||+|++|++|..                 ..+  ..+|. +.++||+||++|||+||.
T Consensus       143 e~~r~~a~~Ga~ii~~psa~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~-~~~aRA~EN~~~vv~aN~  209 (279)
T cd07579         143 EAGRVLALRGCDLLACPAAIAIPFVGAHAGTSVPQPYPIPTGADPTHWH-LARVRAGENNVYFAFANV  209 (279)
T ss_pred             HHHHHHHHCCCCEEEECCCcCCccccccccccccCCCCCcCccchhHHH-HhHhHHhhCCeEEEEeec
Confidence            9999999999999999998742                 111  25787 579999999999999994

Members of this subgroup have two nitrilase domains. This is the second of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>cd07567 biotinidase_like biotinidase and vanins (class 4 nitrilases)

Probab=100.00  E-value=3.4e-39  Score=297.56  Aligned_cols=199  Identities=30%  Similarity=0.352  Sum_probs=166.9

Q ss_pred             eEEEEEeccc-cccH-------HHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccc--hhhhhc-----------
Q 022660           83 FKVGLCQLSV-TADK-------ERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPV--YAEDID-----------  141 (294)
Q Consensus        83 ~rValvQ~~v-~~d~-------~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~~--~~~~~~-----------  141 (294)
                      +|+|++|..+ +.|.       +.|++++++++++|++.|+|||||||++++||...++..  +++.+.           
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~Nl~~i~~~i~~A~~~gadLIVfPE~~ltGy~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (299)
T cd07567           1 YIAAVVEHHPILSPDPDALQIMEKNLDIYEEIIKSAAKQGADIIVFPEDGLTGFIFTRFVIYPFLEDVPDPEVNWNPCLD   80 (299)
T ss_pred             CEEEEEEEEeeccCCccHHHHHHHHHHHHHHHHHHHHHcCCCEEEccccccCCCCCCccccCchhccccccccccccccc
Confidence            4789999985 3444       899999999999999999999999999999998655321  111110           


Q ss_pred             -cCCCCcHHHHHHHHHHHhcCcEEEEeeeeeee-----------C-CeeEEEEEEEccCCcEEEEEeecccCCCCCCCcc
Q 022660          142 -AGGDASPSTAMLSEVARLLKITIVGGSIPERS-----------G-DRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKI  208 (294)
Q Consensus       142 -~~~~~~~~~~~l~~lA~~~~i~Iv~Gs~~~~~-----------~-~~~yNsa~vi~~~G~il~~y~K~~L~~~~~P~~~  208 (294)
                       .....+++++.|+++|++++++|++| +.++.           + +++||++++|+++|+++++|||+|||        
T Consensus        81 ~~~~~~~~~~~~l~~lAr~~~i~Iv~G-~~e~~~~~~~~~~~~~~~~~~yNsa~vi~~~G~iv~~YrK~hLf--------  151 (299)
T cd07567          81 PDRFDYTEVLQRLSCAARENSIYVVAN-LGEKQPCDSSDPHCPPDGRYQYNTNVVFDRDGTLIARYRKYNLF--------  151 (299)
T ss_pred             ccccCchHHHHHHHHHHHHhCeEEEec-cccccccccccccCCCCCCceeEEEEEEcCCCCccceEeecccc--------
Confidence             01123578999999999999999998 45542           2 36999999999999999999999995        


Q ss_pred             ccccccCccCCC-CCeEEEeCCc-eEEEeeeccCcCcHHHHHHHHC-CCeEEEEcCCCCCCCCHHHHHHHHHHHHHHhCC
Q 022660          209 TFIESKSLTAGE-TPTIVDTDVG-RIGIGICYDIRFQELAMIYGAR-GAHLICYPGAFNMTTGPLHWELLQRARATDNQV  285 (294)
Q Consensus       209 ~f~E~~~f~~G~-~~~v~~~~~g-rigi~ICyD~~fpe~~r~la~~-Gadlil~ps~~~~~~~~~~~~~l~~~RAiEn~~  285 (294)
                        .|..+|.+|+ ++.+|++++| |||++||||++|||++|.++++ |||+|++|++|+...+..+|..+.++||+||++
T Consensus       152 --~E~~~~~~G~~~~~vf~t~~g~kiGvlICyD~~FPE~~r~la~~~GAdlil~paaw~~~~~~~~w~~l~~arA~eN~~  229 (299)
T cd07567         152 --GEPGFDVPPEPEIVTFDTDFGVTFGIFTCFDILFKEPALELVKKLGVDDIVFPTAWFSELPFLTAVQIQQAWAYANGV  229 (299)
T ss_pred             --ccccccCCCCCCceEEECCCCCEEEEEEEeeccchHHHHHHHHhCCCCEEEECCccCCCCCchhHHHHHHHHHHHcCc
Confidence              3666788986 5899999986 9999999999999999999999 999999999987654557999999999999999


Q ss_pred             eeEeecc
Q 022660          286 LPHSPFV  292 (294)
Q Consensus       286 ~vv~an~  292 (294)
                      ||+.+|.
T Consensus       230 ~vi~~N~  236 (299)
T cd07567         230 NLLAANY  236 (299)
T ss_pred             eEEEecC
Confidence            9999996

These secondary amidases participate in vitamin recycling. Biotinidase (EC 3.5.1.12) has both a hydrolase and a transferase activity. It hydrolyzes free biocytin or small biotinyl-peptides produced during the proteolytic degradation of biotin-dependent carboxylases, to release free biotin (vitamin H), and it can transfer biotin to acceptor molecules such as histones. Biotinidase deficiency in humans is an autosomal recessive disorder characterized by neurological and cutaneous symptoms. This subgroup includes the three human vanins, vanin1-3. Vanins are ectoenzymes, Vanin-1, and -2 are membrane associated, vanin-3 is secreted. They are pantotheinases (EC 3.5.1.92, pantetheine hydrolase), which convert pantetheine, to pantothenic acid (vitamin B5) and cysteamine (2-aminoethanethiol, a potent anti-oxidant). They are potential targets for therapeutic intervention in inflammatory disorders. Vanin-1 deficient mice lacking

>cd07576 R-amidase_like Pseudomonas sp

Probab=100.00  E-value=1.3e-38  Score=286.19  Aligned_cols=195  Identities=31%  Similarity=0.458  Sum_probs=171.1

Q ss_pred             EEEEEeccc-cccHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHhcCc
Q 022660           84 KVGLCQLSV-TADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKI  162 (294)
Q Consensus        84 rValvQ~~v-~~d~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i  162 (294)
                      |||++|+++ .+|.+.|++++.+++++|+++|+|||||||++++||...+..... .   ....++..+.++++|+++++
T Consensus         1 kva~~Q~~~~~~d~~~n~~~i~~~i~~a~~~ga~lvv~PE~~l~g~~~~~~~~~~-~---~~~~~~~~~~l~~~a~~~~~   76 (254)
T cd07576           1 RLALYQGPARDGDVAANLARLDEAAARAAAAGADLLVFPELFLTGYNIGDAVARL-A---EPADGPALQALRAIARRHGI   76 (254)
T ss_pred             CEEEEecCCCCCCHHHHHHHHHHHHHHHHHcCCCEEEccCccccCCCCcchhhhh-h---cccCChHHHHHHHHHHHcCC
Confidence            699999998 489999999999999999999999999999999999865432111 0   11235789999999999999


Q ss_pred             EEEEeeeeeeeCCeeEEEEEEEccCCcEEEEEeecccCCCCCCCccccccccCccCCCCCeEEEeCCceEEEeeeccCcC
Q 022660          163 TIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRF  242 (294)
Q Consensus       163 ~Iv~Gs~~~~~~~~~yNsa~vi~~~G~il~~y~K~~L~~~~~P~~~~f~E~~~f~~G~~~~v~~~~~grigi~ICyD~~f  242 (294)
                      ++++| ++++.++++||++++++++|+++.+|+|+||+++        .|..+|.+|+++.+|+++++|+|++||||++|
T Consensus        77 ~ii~G-~~~~~~~~~yNs~~~i~~~G~i~~~y~K~~l~~~--------~E~~~~~~G~~~~v~~~~~~kig~~IC~D~~f  147 (254)
T cd07576          77 AIVVG-YPERAGGAVYNAAVLIDEDGTVLANYRKTHLFGD--------SERAAFTPGDRFPVVELRGLRVGLLICYDVEF  147 (254)
T ss_pred             EEEEe-ccccCCCceEEEEEEECCCCCEeeEEEeeccCCc--------chhhhccCCCCceEEEECCeEEEEEEeecCCC
Confidence            99999 7777888999999999999999999999999752        46778999999999999999999999999999


Q ss_pred             cHHHHHHHHCCCeEEEEcCCCCCCCCHHHHHHHHHHHHHHhCCeeEeecc
Q 022660          243 QELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQVLPHSPFV  292 (294)
Q Consensus       243 pe~~r~la~~Gadlil~ps~~~~~~~~~~~~~l~~~RAiEn~~~vv~an~  292 (294)
                      ||+++.++++|||+|++|++++...+ .+|..+.++||+||++|+|++|.
T Consensus       148 pe~~~~~~~~gadii~~p~~~~~~~~-~~~~~~~~~rA~en~~~vv~an~  196 (254)
T cd07576         148 PELVRALALAGADLVLVPTALMEPYG-FVARTLVPARAFENQIFVAYANR  196 (254)
T ss_pred             CHHHHHHHHCCCCEEEECCccCCCcc-hhhhhhhHHHHHhCCCEEEEEcc
Confidence            99999999999999999998654433 56788889999999999999985

MCI3434 R-amidase and related proteins (putative class 13 nitrilases). Pseudomonas sp. MCI3434 R-amidase hydrolyzes (R,S)-piperazine-2-tert-butylcarboxamide to form (R)-piperazine-2-carboxylic acid. It does so with strict R-stereoselectively. Its preferred substrates are carboxamide compounds which have the amino or imino group connected to their beta- or gamma-carbon. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group. It has been suggested that this subgroup represents a new class. Members of the nitrilase superfamily generally form homomeric compl

>cd07564 nitrilases_CHs Nitrilases, cyanide hydratase (CH)s, and similar proteins (class 1 nitrilases)

Probab=100.00  E-value=1e-38  Score=294.44  Aligned_cols=200  Identities=29%  Similarity=0.377  Sum_probs=169.9

Q ss_pred             eEEEEEecccc-ccHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCcc--------chhhhhc-cCCCCcHHHHH
Q 022660           83 FKVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFP--------VYAEDID-AGGDASPSTAM  152 (294)
Q Consensus        83 ~rValvQ~~v~-~d~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~--------~~~~~~~-~~~~~~~~~~~  152 (294)
                      ||||++|+++. +|.+.|++++++++++|+++|+|||||||++++||...++.        .+....+ +...++++++.
T Consensus         1 ~kia~~Q~~~~~~d~~~nl~~~~~~i~~A~~~ga~lvvfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (297)
T cd07564           1 VKVAAVQAAPVFLDLAATVEKACRLIEEAAANGAQLVVFPEAFIPGYPYWIWFGAPAEGRELFARYYENSVEVDGPELER   80 (297)
T ss_pred             CEEEEEecCcccCCHHHHHHHHHHHHHHHHHCCCCEEEeccccccCCCchhhcCCcccchHHHHHHHHhCcCCCCHHHHH
Confidence            69999999864 89999999999999999999999999999999999764321        1111111 11124578999


Q ss_pred             HHHHHHhcCcEEEEeeeeeeeCCeeEEEEEEEccCCcEEEEEeecccCCCCCCCccccccccCccCCC--CCeEEEeCCc
Q 022660          153 LSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGE--TPTIVDTDVG  230 (294)
Q Consensus       153 l~~lA~~~~i~Iv~Gs~~~~~~~~~yNsa~vi~~~G~il~~y~K~~L~~~~~P~~~~f~E~~~f~~G~--~~~v~~~~~g  230 (294)
                      |+++|++++++|++| .++++++++||++++|+++|+++++|+|+||+.         .|..+|.+|+  ++.+|+++++
T Consensus        81 l~~~a~~~~i~iv~G-~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~l~~---------~E~~~~~~g~~~~~~v~~~~~~  150 (297)
T cd07564          81 LAEAARENGIYVVLG-VSERDGGTLYNTQLLIDPDGELLGKHRKLKPTH---------AERLVWGQGDGSGLRVVDTPIG  150 (297)
T ss_pred             HHHHHHHcCcEEEEe-eEeccCCceEEEEEEEcCCCCEeeeeeccCCCc---------hhhhhcccCCCCCceEEecCCc
Confidence            999999999999999 567777899999999999999999999999843         5777888876  5789999999


Q ss_pred             eEEEeeeccCcCcHHHHHHHHCCCeEEEEcCC--CCCCCCHHHHHHHHHHHHHHhCCeeEeecc
Q 022660          231 RIGIGICYDIRFQELAMIYGARGAHLICYPGA--FNMTTGPLHWELLQRARATDNQVLPHSPFV  292 (294)
Q Consensus       231 rigi~ICyD~~fpe~~r~la~~Gadlil~ps~--~~~~~~~~~~~~l~~~RAiEn~~~vv~an~  292 (294)
                      |||++||||++|||++|.++++|||+++++++  |....+..+|..+.++||+||++|||++|.
T Consensus       151 kig~~ICyD~~fPe~~r~~a~~ga~ii~~~~~~~~~~~~~~~~~~~~~~arAien~~~vv~~N~  214 (297)
T cd07564         151 RLGALICWENYMPLARYALYAQGEQIHVAPWPDFSPYYLSREAWLAASRHYALEGRCFVLSACQ  214 (297)
T ss_pred             eEEEEEEhhcCCHHHHHHHHHCCCeEEEECCCCcccccccHHHHHHHHHHHHHhcCCEEEEccc
Confidence            99999999999999999999999999999766  333456789999999999999999999984

Nitrilases (nitrile aminohydrolases, EC:3.5.5.1) hydrolyze nitriles (RCN) to ammonia and the corresponding carboxylic acid. Most nitrilases prefer aromatic nitriles, some prefer arylacetonitriles and others aliphatic nitriles. This group includes the nitrilase cyanide dihydratase (CDH), which hydrolyzes inorganic cyanide (HCN) to produce formate. It also includes cyanide hydratase (CH), which hydrolyzes HCN to formamide. This group includes four Arabidopsis thaliana nitrilases (Ath)NIT1-4. AthNIT1-3 have a strong substrate preference for phenylpropionitrile (PPN) and other nitriles which may originate from the breakdown of glucosinolates. The product of PPN hydrolysis, phenylacetic acid has auxin activity. AthNIT1-3 can also convert indoacetonitrile to indole-3-acetic acid (IAA, auxin), but with a lower affinity and velocity. From their expression patterns, it has been speculated that

>PLN02504 nitrilase

Probab=100.00  E-value=2.9e-38  Score=297.06  Aligned_cols=202  Identities=28%  Similarity=0.418  Sum_probs=172.4

Q ss_pred             CCCCceEEEEEecccc-ccHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCC-cc------------chhhhh-cc
Q 022660           78 PPVAKFKVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDS-FP------------VYAEDI-DA  142 (294)
Q Consensus        78 ~~~~~~rValvQ~~v~-~d~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~-~~------------~~~~~~-~~  142 (294)
                      +.+++||||++|+++. .|.+.|++++++++++|++.|+|||||||++++||+... +.            .+.... .+
T Consensus        20 ~~~~~~kiAlvQ~~~~~~d~~~nl~~~~~li~eAa~~gadLIVfPE~~ltGyp~~~~~~~~~~~~~~~~~~~~~~~~~~a   99 (346)
T PLN02504         20 ASSSTVRATVVQASTVFYDTPATLDKAERLIAEAAAYGSQLVVFPEAFIGGYPRGSTFGLAIGDRSPKGREDFRKYHASA   99 (346)
T ss_pred             ccCCceEEEEEEcCcccCCHHHHHHHHHHHHHHHHHCCCeEEEeCccccccCCcchhhccccccccchhHHHHHHHHHhc
Confidence            3556899999999975 899999999999999999999999999999999997521 11            111111 11


Q ss_pred             CCCCcHHHHHHHHHHHhcCcEEEEeeeeeeeCCeeEEEEEEEccCCcEEEEEeecccCCCCCCCccccccccCccCCC--
Q 022660          143 GGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGE--  220 (294)
Q Consensus       143 ~~~~~~~~~~l~~lA~~~~i~Iv~Gs~~~~~~~~~yNsa~vi~~~G~il~~y~K~~L~~~~~P~~~~f~E~~~f~~G~--  220 (294)
                      ...+++.++.|+++|++++++|++| ..+++++++||++++|+++|+++.+|+|+|+++         .|..+|.+|.  
T Consensus       100 ~~~~g~~i~~l~~~A~~~~i~iv~G-~~e~~~~~~yNsa~~i~~~G~i~~~yrK~~p~~---------~E~~~f~~G~g~  169 (346)
T PLN02504        100 IDVPGPEVDRLAAMAGKYKVYLVMG-VIERDGYTLYCTVLFFDPQGQYLGKHRKLMPTA---------LERLIWGFGDGS  169 (346)
T ss_pred             ccCCCHHHHHHHHHHHHcCCEEEEe-eeecCCCceEEEEEEECCCCCEEeEEeeccCCc---------ccceeeecCCCC
Confidence            1234688999999999999999999 567778899999999999999999999999853         5777788876  


Q ss_pred             CCeEEEeCCceEEEeeeccCcCcHHHHHHHHCCCeEEEEcCCCCCCCCHHHHHHHHHHHHHHhCCeeEeeccc
Q 022660          221 TPTIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQVLPHSPFVF  293 (294)
Q Consensus       221 ~~~v~~~~~grigi~ICyD~~fpe~~r~la~~Gadlil~ps~~~~~~~~~~~~~l~~~RAiEn~~~vv~an~~  293 (294)
                      .+.+|+++++|||++||||.+|||++|.++.+|||++++|+++.    ..+|+.+.++||+||++|||++|..
T Consensus       170 ~~~vf~~~~griG~lICyD~~fPe~~r~la~~Gadii~~p~~~~----~~~w~~~~rarA~En~~~Vv~aN~v  238 (346)
T PLN02504        170 TIPVYDTPIGKIGAVICWENRMPLLRTAMYAKGIEIYCAPTADS----RETWQASMRHIALEGGCFVLSANQF  238 (346)
T ss_pred             CCceEEcCCceEEEEEeccchhHHHHHHHHHCCCeEEEECCCCC----chhHHHHHHHHHHccCcEEEEeccc
Confidence            58899999999999999999999999999999999999999863    3689999999999999999999973

>PLN02747 N-carbamolyputrescine amidase

Probab=100.00  E-value=4.5e-38  Score=289.83  Aligned_cols=207  Identities=25%  Similarity=0.380  Sum_probs=173.9

Q ss_pred             CCCceEEEEEeccccccHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCcc-chhhhhccCCCCcHHHHHHHHHH
Q 022660           79 PVAKFKVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFP-VYAEDIDAGGDASPSTAMLSEVA  157 (294)
Q Consensus        79 ~~~~~rValvQ~~v~~d~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~-~~~~~~~~~~~~~~~~~~l~~lA  157 (294)
                      +..++|||++|+.+.+|.+.|++++.+++++|++.|+|||||||++++||...... ...+. ......++.++.++++|
T Consensus         3 ~~~~~~va~~Q~~~~~d~~~N~~~i~~~i~~A~~~gadlvvfPE~~l~g~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~a   81 (296)
T PLN02747          3 MGRKVVVAALQFACSDDRAANVDKAERLVREAHAKGANIILIQELFEGYYFCQAQREDFFQR-AKPYEGHPTIARMQKLA   81 (296)
T ss_pred             CCcceEEEEEEecCCCCHHHHHHHHHHHHHHHHHCCCcEEEcccccCCCCCccccccchhhh-cccCCCChHHHHHHHHH
Confidence            34579999999998899999999999999999999999999999999998754211 11110 00111236889999999


Q ss_pred             HhcCcEEEEeeeeeeeCCeeEEEEEEEccCCcEEEEEeecccCCCCCCCccccccccCccCCC-CCeEEEeCCceEEEee
Q 022660          158 RLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGE-TPTIVDTDVGRIGIGI  236 (294)
Q Consensus       158 ~~~~i~Iv~Gs~~~~~~~~~yNsa~vi~~~G~il~~y~K~~L~~~~~P~~~~f~E~~~f~~G~-~~~v~~~~~grigi~I  236 (294)
                      ++++++|++| +++++++++||++++++++|+++++|+|+||+.     ...+.|..+|.+|+ .+.+|+++++|+|++|
T Consensus        82 ~~~~i~i~~g-~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~-----~~~~~e~~~~~~G~~~~~~~~~~~~rig~~I  155 (296)
T PLN02747         82 KELGVVIPVS-FFEEANNAHYNSIAIIDADGTDLGLYRKSHIPD-----GPGYQEKFYFNPGDTGFKVFDTKFAKIGVAI  155 (296)
T ss_pred             HHcCeEEEee-eeecCCCceEEEEEEECCCCCCcceEEEEecCC-----CCCccceeeecCCCCCCeeEEcCCccEEEEE
Confidence            9999999998 567778899999999999999999999999943     12345777899997 4899999999999999


Q ss_pred             eccCcCcHHHHHHHHCCCeEEEEcCCCCCC------CCHHHHHHHHHHHHHHhCCeeEeecc
Q 022660          237 CYDIRFQELAMIYGARGAHLICYPGAFNMT------TGPLHWELLQRARATDNQVLPHSPFV  292 (294)
Q Consensus       237 CyD~~fpe~~r~la~~Gadlil~ps~~~~~------~~~~~~~~l~~~RAiEn~~~vv~an~  292 (294)
                      |||.+||+++|.++++|||+|++|++|+..      ....+|..+.++||+||++||+.+|.
T Consensus       156 C~D~~fpe~~r~~~~~Ga~lil~ps~~~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv~~N~  217 (296)
T PLN02747        156 CWDQWFPEAARAMVLQGAEVLLYPTAIGSEPQDPGLDSRDHWKRVMQGHAGANLVPLVASNR  217 (296)
T ss_pred             EccccchHHHHHHHHCCCCEEEEeCccCCCCcccccchHHHHHHHHHHHHHHcCCeEEEEec
Confidence            999999999999999999999999997532      13468999999999999999999985

>COG0388 Predicted amidohydrolase [General function prediction only]

Probab=100.00  E-value=5.2e-38  Score=286.17  Aligned_cols=201  Identities=36%  Similarity=0.631  Sum_probs=175.0

Q ss_pred             ceEEEEEeccc-cccHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHhc
Q 022660           82 KFKVGLCQLSV-TADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLL  160 (294)
Q Consensus        82 ~~rValvQ~~v-~~d~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~  160 (294)
                      .||||++|+.+ ..|.+.|++++.+++++|++.|||||||||++++||.+.+ ....+... ....++..+.+.++++++
T Consensus         2 ~~rvA~~Q~~~~~~d~~~N~~~~~~~i~~a~~~ga~LvvfPEl~~tgy~~~~-~~~~~~~~-~~~~~~~~~~l~~~a~~~   79 (274)
T COG0388           2 MMRVAAAQMAPKAGDPAENLARILRLIREAAARGADLVVFPELFLTGYPCED-DLFLEEAA-AEAGEETLEFLAALAEEG   79 (274)
T ss_pred             ceEEEEEEecCCCCCHHHHHHHHHHHHHHHHHcCCCEEECCcccccCCCccc-HHHHHhhh-hccCChHHHHHHHHHHhC
Confidence            58999999997 5999999999999999999999999999999999999875 11111111 112357999999999988


Q ss_pred             CcEEEEeeeeeeeCCeeEEEEEEEccCCcEEEEEeecccCCCCCCCccccccccCccCCCCC-eEEEeCCceEEEeeecc
Q 022660          161 KITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETP-TIVDTDVGRIGIGICYD  239 (294)
Q Consensus       161 ~i~Iv~Gs~~~~~~~~~yNsa~vi~~~G~il~~y~K~~L~~~~~P~~~~f~E~~~f~~G~~~-~v~~~~~grigi~ICyD  239 (294)
                      ++++++|+.+++.  ..||++++++++|+++++|+|+||++.      .+.|..+|.+|+.. .+|+++++|+|++||||
T Consensus        80 ~~~ivg~~~~~~~--~~~~~~~~i~~~G~ii~~y~K~hl~~~------~~~e~~~~~~G~~~~~v~~~~~~kig~~IC~D  151 (274)
T COG0388          80 GVIIVGGPLPERE--KLYNNAALIDPDGEILGKYRKLHLFDA------FYEERRFFTPGDEGVVVFETDGGKIGLLICYD  151 (274)
T ss_pred             CeEEEEeeeeccc--cceeeEEEEcCCCcEEeEEeeecCCCC------ccchhhhccCCCccceeEEeCCceEEEEEEee
Confidence            8888888665544  899999999999999999999999762      35688999999988 59999999999999999


Q ss_pred             CcCcHHHHHH-HHCCCeEEEEcCCCCCCCCHHHHHHHHHHHHHHhCCeeEeecc
Q 022660          240 IRFQELAMIY-GARGAHLICYPGAFNMTTGPLHWELLQRARATDNQVLPHSPFV  292 (294)
Q Consensus       240 ~~fpe~~r~l-a~~Gadlil~ps~~~~~~~~~~~~~l~~~RAiEn~~~vv~an~  292 (294)
                      ++|||+.+.+ +.+|||+|++|++|+...+.++|..+.++||+||++||+.+|+
T Consensus       152 ~~fPe~~~~~~a~~Gaeii~~p~a~~~~~~~~~w~~l~~arA~en~~~vv~~n~  205 (274)
T COG0388         152 LRFPELARRLLALGGAELLLVPAAWPAERGLDHWEVLLRARAIENQVYVLAANR  205 (274)
T ss_pred             ccCHHHHHHHHHhcCCeEEEEcCCCCCcccHHHHHHHHHHHhhhcCceEEEecc
Confidence            9999988877 7889999999999998888899999999999999999999996

>cd07584 nitrilase_6 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

Probab=100.00  E-value=4.8e-38  Score=283.56  Aligned_cols=197  Identities=32%  Similarity=0.527  Sum_probs=169.6

Q ss_pred             EEEEEecccc-ccHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHhcCc
Q 022660           84 KVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKI  162 (294)
Q Consensus        84 rValvQ~~v~-~d~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i  162 (294)
                      |||++|+.+. +|.+.|++++++++++|++.|+|||||||++++||...++........ ....++..+.++++|+++++
T Consensus         1 ria~~q~~~~~~d~~~n~~~~~~~i~~a~~~ga~liv~PE~~l~g~~~~~~~~~~~~~~-~~~~~~~~~~l~~~a~~~~i   79 (258)
T cd07584           1 KVALIQMDSVLGDVKANLKKAAELCKEAAAEGADLICFPELATTGYRPDLLGPKLWELS-EPIDGPTVRLFSELAKELGV   79 (258)
T ss_pred             CEEEEEecCccCCHHHHHHHHHHHHHHHHHcCCCEEEcccccccCCCccccchhhHhhc-cCCCCcHHHHHHHHHHHcCe
Confidence            6899999865 899999999999999999999999999999999998654322111111 11234689999999999999


Q ss_pred             EEEEeeeeeeeC--CeeEEEEEEEccCCcEEEEEeecccCCCCCCCccccccccCccCCCCCeEEEeCCceEEEeeeccC
Q 022660          163 TIVGGSIPERSG--DRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDI  240 (294)
Q Consensus       163 ~Iv~Gs~~~~~~--~~~yNsa~vi~~~G~il~~y~K~~L~~~~~P~~~~f~E~~~f~~G~~~~v~~~~~grigi~ICyD~  240 (294)
                      +|++| .+++++  +++||++++|+++|+++..|+|+||++         .|..+|.+|+.+.+|+++++|+|++||||+
T Consensus        80 ~i~~G-~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~~l~~---------~e~~~~~~G~~~~~~~~~~~~~g~~IC~D~  149 (258)
T cd07584          80 YIVCG-FVEKGGVPGKVYNSAVVIDPEGESLGVYRKIHLWG---------LEKQYFREGEQYPVFDTPFGKIGVMICYDM  149 (258)
T ss_pred             EEEEe-ehcccCCCCceEEEEEEECCCCCEEeEEEeecCCc---------hhhhhccCCCCCeeEEcCCceEEEEEEcCc
Confidence            99999 455543  689999999999999999999999965         466789999999999999999999999999


Q ss_pred             cCcHHHHHHHHCCCeEEEEcCCCCCCCCHHHHHHHHHHHHHHhCCeeEeecc
Q 022660          241 RFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQVLPHSPFV  292 (294)
Q Consensus       241 ~fpe~~r~la~~Gadlil~ps~~~~~~~~~~~~~l~~~RAiEn~~~vv~an~  292 (294)
                      +||++.|.++++|+|+|++|++|... ...+|....++||+||++||+++|.
T Consensus       150 ~fpe~~r~~~~~gadll~~ps~~~~~-~~~~~~~~~~~rA~En~~~vv~~n~  200 (258)
T cd07584         150 GFPEVARILTLKGAEVIFCPSAWREQ-DADIWDINLPARALENTVFVAAVNR  200 (258)
T ss_pred             cChHHHHHHHHCCCcEEEECCccCCC-CchHHHHHHHHHHHhCCcEEEEECc
Confidence            99999999999999999999998654 4578888899999999999999884

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>cd07581 nitrilase_3 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

Probab=100.00  E-value=6.4e-38  Score=282.14  Aligned_cols=197  Identities=38%  Similarity=0.593  Sum_probs=171.5

Q ss_pred             EEEEeccccccHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCc--cchhhhhccCCCCcHHHHHHHHHHHhcCc
Q 022660           85 VGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSF--PVYAEDIDAGGDASPSTAMLSEVARLLKI  162 (294)
Q Consensus        85 ValvQ~~v~~d~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~--~~~~~~~~~~~~~~~~~~~l~~lA~~~~i  162 (294)
                      ||++|++..+|.+.|++++.+.+++|+++|+|||||||++++||..++.  ......+     .+++++.|+++|+++++
T Consensus         1 ia~~Q~~~~~d~~~n~~~~~~~i~~a~~~g~dlivfPE~~l~g~~~~~~~~~~~~~~~-----~~~~~~~l~~~a~~~~i   75 (255)
T cd07581           1 VALAQFASSGDKEENLEKVRRLLAEAAAAGADLVVFPEYTMARFGDGLDDYARVAEPL-----DGPFVSALARLARELGI   75 (255)
T ss_pred             CEEEEeeCCCCHHHHHHHHHHHHHHHHHcCCCEEECcchhcCCCCcchhhHHhhhccC-----CCHHHHHHHHHHHHcCe
Confidence            6899999889999999999999999999999999999999999976542  1222222     34789999999999999


Q ss_pred             EEEEeeeeeeeC-CeeEEEEEEEccCCcEEEEEeecccCCCCCCCccccccccCccCCCC--CeEEEeCCceEEEeeecc
Q 022660          163 TIVGGSIPERSG-DRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGET--PTIVDTDVGRIGIGICYD  239 (294)
Q Consensus       163 ~Iv~Gs~~~~~~-~~~yNsa~vi~~~G~il~~y~K~~L~~~~~P~~~~f~E~~~f~~G~~--~~v~~~~~grigi~ICyD  239 (294)
                      ++++| .+++++ +++||++++|+++|+++++|+|+||++..     .+.|..+|.+|++  +.+++++++|+|++||||
T Consensus        76 ~iv~G-~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~~L~~~~-----~~~e~~~~~~G~~~~~~~~~~~~~kig~~IC~D  149 (255)
T cd07581          76 TVVAG-MFEPAGDGRVYNTLVVVGPDGEIIAVYRKIHLYDAF-----GFRESDTVAPGDELPPVVFVVGGVKVGLATCYD  149 (255)
T ss_pred             EEEEE-eeeeCCCCcEEEeEEEECCCCcEEEEEeeeccCCCC-----CcCcccccCCCCCCCceEEecCCceEEEEEEec
Confidence            99999 556654 48999999999999999999999997531     3568889999998  788998899999999999


Q ss_pred             CcCcHHHHHHHHCCCeEEEEcCCCCCCC-CHHHHHHHHHHHHHHhCCeeEeecc
Q 022660          240 IRFQELAMIYGARGAHLICYPGAFNMTT-GPLHWELLQRARATDNQVLPHSPFV  292 (294)
Q Consensus       240 ~~fpe~~r~la~~Gadlil~ps~~~~~~-~~~~~~~l~~~RAiEn~~~vv~an~  292 (294)
                      .+||++.+.++++|||+|++|++|.... ..++|..+.++||+||++|++++|.
T Consensus       150 ~~~pe~~~~~~~~ga~lil~ps~~~~~~~~~~~~~~~~~~rA~en~~~vv~~n~  203 (255)
T cd07581         150 LRFPELARALALAGADVIVVPAAWVAGPGKEEHWETLLRARALENTVYVAAAGQ  203 (255)
T ss_pred             ccCHHHHHHHHHCCCcEEEECCcccCCCCchHHHHHHHHHHHHHhCCEEEEEcC
Confidence            9999999999999999999999986543 4678999999999999999999984

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>cd07580 nitrilase_2 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

Probab=100.00  E-value=3.2e-38  Score=286.49  Aligned_cols=197  Identities=33%  Similarity=0.486  Sum_probs=170.2

Q ss_pred             EEEEEecccc-ccHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHhcCc
Q 022660           84 KVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKI  162 (294)
Q Consensus        84 rValvQ~~v~-~d~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i  162 (294)
                      |||++|+++. +|.+.|++++.+++++|.+.|+|||||||++++||...+.....+.. ....+++.++.++++|+++++
T Consensus         1 ria~~Q~~~~~~~~~~n~~~~~~~i~~a~~~g~dlvvfPE~~l~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~~~   79 (268)
T cd07580           1 RVACVQFDPRVGDLDANLARSIELIREAADAGANLVVLPELANTGYVFESRDEAFALA-EEVPDGASTRAWAELAAELGL   79 (268)
T ss_pred             CEEEEEccCccCcHHHHHHHHHHHHHHHHHcCCCEEEcCCcccccCCCCCHHHHHHhh-ccCCCCchHHHHHHHHHHcCc
Confidence            6999999976 89999999999999999999999999999999999776533221111 111234688999999999999


Q ss_pred             EEEEeeeeeeeCCeeEEEEEEEccCCcEEEEEeecccCCCCCCCccccccccCccCCCC-CeEEEeCCceEEEeeeccCc
Q 022660          163 TIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGET-PTIVDTDVGRIGIGICYDIR  241 (294)
Q Consensus       163 ~Iv~Gs~~~~~~~~~yNsa~vi~~~G~il~~y~K~~L~~~~~P~~~~f~E~~~f~~G~~-~~v~~~~~grigi~ICyD~~  241 (294)
                      +|++| +++++++++||++++++++|. +.+|+|+||++         .|..+|.+|++ +.+|+++++|+|++||||++
T Consensus        80 ~i~~G-~~~~~~~~~yNs~~vi~~~g~-~~~y~K~~l~~---------~e~~~f~~G~~~~~v~~~~~~~ig~~IC~D~~  148 (268)
T cd07580          80 YIVAG-FAERDGDRLYNSAVLVGPDGV-IGTYRKAHLWN---------EEKLLFEPGDLGLPVFDTPFGRIGVAICYDGW  148 (268)
T ss_pred             EEEee-cccccCCceEEEEEEECCCCc-EEEEEEecCCc---------hhcceecCCCCCCceEEcCCCcEEEEEECccc
Confidence            99999 677777899999999999995 78999999965         47778999998 99999999999999999999


Q ss_pred             CcHHHHHHHHCCCeEEEEcCCCCCCCCH-----HHHHHHHHHHHHHhCCeeEeecc
Q 022660          242 FQELAMIYGARGAHLICYPGAFNMTTGP-----LHWELLQRARATDNQVLPHSPFV  292 (294)
Q Consensus       242 fpe~~r~la~~Gadlil~ps~~~~~~~~-----~~~~~l~~~RAiEn~~~vv~an~  292 (294)
                      ||+++|.++.+|||+|++|++|++..+.     .+|..+.++||+||++|||++|.
T Consensus       149 fpe~~r~~~~~ga~li~~ps~~~~~~~~~~~~~~~~~~~~~arA~en~~~vv~~n~  204 (268)
T cd07580         149 FPETFRLLALQGADIVCVPTNWVPMPRPPEGGPPMANILAMAAAHSNGLFIACADR  204 (268)
T ss_pred             chHHHHHHHHcCCCEEEEcCcccccCCcccccCcHHHHhhHHHHhhCCcEEEEEee
Confidence            9999999999999999999998765433     57888889999999999999985

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>cd07573 CPA N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases)

Probab=100.00  E-value=7.9e-38  Score=285.91  Aligned_cols=203  Identities=30%  Similarity=0.455  Sum_probs=172.3

Q ss_pred             eEEEEEeccccccHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCcc-chhhhhccCCCCcHHHHHHHHHHHhcC
Q 022660           83 FKVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFP-VYAEDIDAGGDASPSTAMLSEVARLLK  161 (294)
Q Consensus        83 ~rValvQ~~v~~d~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~-~~~~~~~~~~~~~~~~~~l~~lA~~~~  161 (294)
                      ||||++|+++.+|.+.|++++.+++++|.+.|+|||||||++++||...+.. ...+. ......+++++.+.++|++++
T Consensus         1 ~~ia~~Q~~~~~d~~~n~~~~~~~i~~A~~~gadlivfPE~~l~g~~~~~~~~~~~~~-~~~~~~~~~~~~l~~la~~~~   79 (284)
T cd07573           1 VTVALVQMACSEDPEANLAKAEELVREAAAQGAQIVCLQELFETPYFCQEEDEDYFDL-AEPPIPGPTTARFQALAKELG   79 (284)
T ss_pred             CEEEEEEeeccCCHHHHHHHHHHHHHHHHHCCCcEEEccccccCCCCcccccchhHHh-ccccCCCHHHHHHHHHHHHCC
Confidence            6999999999899999999999999999999999999999999999765431 11110 000123578899999999999


Q ss_pred             cEEEEeeeeeee-CCeeEEEEEEEccCCcEEEEEeecccCCCCCCCccccccccCccCCC-CCeEEEeCCceEEEeeecc
Q 022660          162 ITIVGGSIPERS-GDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGE-TPTIVDTDVGRIGIGICYD  239 (294)
Q Consensus       162 i~Iv~Gs~~~~~-~~~~yNsa~vi~~~G~il~~y~K~~L~~~~~P~~~~f~E~~~f~~G~-~~~v~~~~~grigi~ICyD  239 (294)
                      ++|++|. .+++ ++++||++++++++|+++.+|+|+||+.     ...+.|..+|.+|+ ++.+|+++++|+|++||||
T Consensus        80 i~iv~g~-~~~~~~~~~yNs~~v~~~~G~i~~~y~K~~l~~-----~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~D  153 (284)
T cd07573          80 VVIPVSL-FEKRGNGLYYNSAVVIDADGSLLGVYRKMHIPD-----DPGYYEKFYFTPGDTGFKVFDTRYGRIGVLICWD  153 (284)
T ss_pred             EEEEecc-eeeCCCCcEEEEEEEECCCCCEEeEEeeeccCC-----CCcccccceecCCCCCCceEecCCceEEEEEecc
Confidence            9999995 4554 4689999999999999999999999843     22456778899999 7999999999999999999


Q ss_pred             CcCcHHHHHHHHCCCeEEEEcCCCCCC--------CCHHHHHHHHHHHHHHhCCeeEeecc
Q 022660          240 IRFQELAMIYGARGAHLICYPGAFNMT--------TGPLHWELLQRARATDNQVLPHSPFV  292 (294)
Q Consensus       240 ~~fpe~~r~la~~Gadlil~ps~~~~~--------~~~~~~~~l~~~RAiEn~~~vv~an~  292 (294)
                      .+||+++|.++++|||+|++|+++++.        ....+|..+.++||+||++|+|++|.
T Consensus       154 ~~fpe~~r~~~~~gadlil~ps~~~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~an~  214 (284)
T cd07573         154 QWFPEAARLMALQGAEILFYPTAIGSEPQEPPEGLDQRDAWQRVQRGHAIANGVPVAAVNR  214 (284)
T ss_pred             ccchHHHHHHHHCCCCEEEecCcccCCCCCccccCCchHHHHHHHHHHHHHcCceEEEecc
Confidence            999999999999999999999997542        23468888899999999999999985

CPA (EC 3.5.1.53, also known as N-carbamoylputrescine amidase and carbamoylputrescine hydrolase) converts N-carbamoylputrescine to putrescine, a step in polyamine biosynthesis in plants and bacteria. This subgroup includes Arabidopsis thaliana CPA, also known as nitrilase-like 1 (NLP1), and Pseudomonas aeruginosa AguB. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 11. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer; P. aeruginosa AugB is a homohexamer, Arabidopsis thaliana NLP1 is a homooctomer.

>cd07570 GAT_Gln-NAD-synth Glutamine aminotransferase (GAT, glutaminase) domain of glutamine-dependent NAD synthetases (class 7 and 8 nitrilases)

Probab=100.00  E-value=2e-38  Score=286.50  Aligned_cols=199  Identities=27%  Similarity=0.358  Sum_probs=167.1

Q ss_pred             EEEEEecccc-ccHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHhcCc
Q 022660           84 KVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKI  162 (294)
Q Consensus        84 rValvQ~~v~-~d~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i  162 (294)
                      |||++|+++. +|.+.|++++.+++++|++.|+|||||||++++||...+..........   ..+.++.|++.++++++
T Consensus         1 ria~~Q~~~~~~d~~~N~~~~~~~i~~A~~~gadlvvfPE~~l~gy~~~~~~~~~~~~~~---~~~~~~~la~~~~~~~i   77 (261)
T cd07570           1 RIALAQLNPTVGDLEGNAEKILEAIREAKAQGADLVVFPELSLTGYPPEDLLLRPDFLEA---AEEALEELAAATADLDI   77 (261)
T ss_pred             CEEEEeCCCcCCCHHHHHHHHHHHHHHHHHcCCCEEEccchhccCCChHHHhhCHHHHHH---HHHHHHHHHHhcccCCc
Confidence            6999999975 8999999999999999999999999999999999976442211111110   11345556666666799


Q ss_pred             EEEEeeeeeeeCCeeEEEEEEEccCCcEEEEEeecccCCCCCCCccccccccCccCCCCCeEEEeCCceEEEeeeccCcC
Q 022660          163 TIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRF  242 (294)
Q Consensus       163 ~Iv~Gs~~~~~~~~~yNsa~vi~~~G~il~~y~K~~L~~~~~P~~~~f~E~~~f~~G~~~~v~~~~~grigi~ICyD~~f  242 (294)
                      ++++| .++++++++||+++++ ++|+++++|+|+||.+++     .+.|..+|.+|+...+|+++++|||++||||.+|
T Consensus        78 ~ii~G-~~~~~~~~~yNs~~~i-~~G~i~~~y~K~~l~~~~-----~~~e~~~~~~G~~~~~~~~~~~~ig~~IC~D~~f  150 (261)
T cd07570          78 AVVVG-LPLRHDGKLYNAAAVL-QNGKILGVVPKQLLPNYG-----VFDEKRYFTPGDKPDVLFFKGLRIGVEICEDLWV  150 (261)
T ss_pred             EEEEe-ceEecCCCEEEEEEEE-eCCEEEEEEECccCcCCc-----cccccccCccCCCCCeEEECCEEEEEEeecccCC
Confidence            99999 5677778999999999 699999999999996653     4568889999999999999999999999999999


Q ss_pred             cHH-HHHHHHCCCeEEEEcCCCCCCCC-HHHHHHHHHHHHHHhCCeeEeecc
Q 022660          243 QEL-AMIYGARGAHLICYPGAFNMTTG-PLHWELLQRARATDNQVLPHSPFV  292 (294)
Q Consensus       243 pe~-~r~la~~Gadlil~ps~~~~~~~-~~~~~~l~~~RAiEn~~~vv~an~  292 (294)
                      |++ .|.++++|||+|++|++|+...+ ..+|..+.++||+||++|||++|.
T Consensus       151 pe~~~r~~~~~ga~ll~~ps~~~~~~~~~~~~~~~~~~rA~en~~~vv~~n~  202 (261)
T cd07570         151 PDPPSAELALAGADLILNLSASPFHLGKQDYRRELVSSRSARTGLPYVYVNQ  202 (261)
T ss_pred             CCchHHHHHHcCCcEEEEeCCCccccCcHHHHHHHHHHHHHHhCCcEEEEeC
Confidence            999 99999999999999999875543 357788899999999999999996

Glutamine-dependent NAD synthetases are bifunctional enzymes, which have an N-terminal GAT domain and a C-terminal NAD+ synthetase domain. The GAT domain is a glutaminase (EC 3.5.1.2) which hydrolyses L-glutamine to L-glutamate and ammonia. The ammonia is used by the NAD+ synthetase domain in the ATP-dependent amidation of nicotinic acid adenine dinucleotide. Glutamine aminotransferases are categorized depending on their active site residues into different unrelated classes. This class of GAT domain belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this sub

>cd07565 aliphatic_amidase aliphatic amidases (class 2 nitrilases)

Probab=100.00  E-value=1.2e-37  Score=286.80  Aligned_cols=193  Identities=23%  Similarity=0.311  Sum_probs=164.7

Q ss_pred             eEEEEEeccc-----cccHHHHHHHHHHHHHHHHH--CCCcEEEcCCCCCCCCCCCCc--cchhhhhccCCCCcHHHHHH
Q 022660           83 FKVGLCQLSV-----TADKERNIAHARRAIEEAAE--KGAKLILLPEIWNSPYSHDSF--PVYAEDIDAGGDASPSTAML  153 (294)
Q Consensus        83 ~rValvQ~~v-----~~d~~~n~~~i~~~i~~A~~--~gadLVVfPE~~l~gy~~~~~--~~~~~~~~~~~~~~~~~~~l  153 (294)
                      ++||++|+++     .+|.+.|++++.+++++|++  .|+|||||||++++||..+..  .+.++.     .+++..+.|
T Consensus         1 ~~Ia~~Q~~~~~~~~~~d~~~Nl~~~~~~i~~A~~~~~gadLvvfPE~~ltGy~~~~~~~~~~a~~-----~~~~~~~~l   75 (291)
T cd07565           1 VGVAVVQYKVPVLHTKEEVLENAERIADMVEGTKRGLPGMDLIVFPEYSTQGLMYDKWTMDETACT-----VPGPETDIF   75 (291)
T ss_pred             CeEEEEecccccccccccHHHHHHHHHHHHHHHHhhCCCCeEEEeCCcccccCCCCcchhhhhccC-----CCChhHHHH
Confidence            4799999997     37999999999999999986  599999999999999975321  222222     235789999


Q ss_pred             HHHHHhcCcEEEEeeeeeeeC---CeeEEEEEEEccCCcEEEEEeecccCCCCCCCccccccccCccCCCC-CeEEEeC-
Q 022660          154 SEVARLLKITIVGGSIPERSG---DRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGET-PTIVDTD-  228 (294)
Q Consensus       154 ~~lA~~~~i~Iv~Gs~~~~~~---~~~yNsa~vi~~~G~il~~y~K~~L~~~~~P~~~~f~E~~~f~~G~~-~~v~~~~-  228 (294)
                      +++|+++++++++| +.++++   +++||++++|+++|+++.+|+|+||+.   |       ...|.+|++ +.++++. 
T Consensus        76 ~~lA~~~~i~i~~g-~~e~~~~~~~~~yNsa~~i~~~G~i~~~YrK~hl~~---~-------~e~~~~G~~~~~v~~~~~  144 (291)
T cd07565          76 AEACKEAKVWGVFS-IMERNPDHGKNPYNTAIIIDDQGEIVLKYRKLHPWV---P-------IEPWYPGDLGTPVCEGPK  144 (291)
T ss_pred             HHHHHHCCeEEEEE-eeeecCCCCCceEEEEEEECCCCcEEEEEEecccCC---C-------cccccCCCCCceeeECCC
Confidence            99999999999988 556653   689999999999999999999999853   1       124789987 8899986 


Q ss_pred             CceEEEeeeccCcCcHHHHHHHHCCCeEEEEcCCCCCCCCHHHHHHHHHHHHHHhCCeeEeecc
Q 022660          229 VGRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQVLPHSPFV  292 (294)
Q Consensus       229 ~grigi~ICyD~~fpe~~r~la~~Gadlil~ps~~~~~~~~~~~~~l~~~RAiEn~~~vv~an~  292 (294)
                      ++|||++||||++|||++|.++++|||+|++|++|+.. ...+|..+.++||+||++||+++|.
T Consensus       145 g~riG~~ICyD~~fPe~~r~la~~GAdill~ps~~~~~-~~~~w~~~~~aRA~En~~~vv~aN~  207 (291)
T cd07565         145 GSKIALIICHDGMYPEIARECAYKGAELIIRIQGYMYP-AKDQWIITNKANAWCNLMYTASVNL  207 (291)
T ss_pred             CCEEEEEEEcCCCCcHHHHHHHHCCCeEEEECCcCCCC-cchHHHHHHHHHHHhcCcEEEEecc
Confidence            56999999999999999999999999999999998754 3568999999999999999999986

Aliphatic amidases catalyze the hydrolysis of short-chain aliphatic amides to form ammonia and the corresponding organic acid. This group includes Pseudomonas aeruginosa (Pa) AmiE, the amidase from Geobacillus pallidus RAPc8 (RAPc8 amidase), and Helicobacter pylori (Hp) AmiE and AmiF. PaAimE and HpAmiE hydrolyze various very short aliphatic amides, including propionamide, acetamide and acrylamide. HpAmiF is a formamidase which specifically hydrolyzes formamide. These proteins belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 2. Members of this superfamily generally form homomeric complexes, the basic

>cd07574 nitrilase_Rim1_like Uncharacterized subgroup of the nitrilase superfamily; some members of this subgroup have an N-terminal RimI domain (class 12 nitrilases)

Probab=100.00  E-value=7e-38  Score=285.86  Aligned_cols=200  Identities=31%  Similarity=0.473  Sum_probs=169.9

Q ss_pred             eEEEEEecccc--ccHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCC---CCCcc---chhhhhccCCCCcHHHHHHH
Q 022660           83 FKVGLCQLSVT--ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYS---HDSFP---VYAEDIDAGGDASPSTAMLS  154 (294)
Q Consensus        83 ~rValvQ~~v~--~d~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~---~~~~~---~~~~~~~~~~~~~~~~~~l~  154 (294)
                      ||||++|+++.  +|.+.|++++++++++|++.|+|||||||++++||.   ..+..   .......  ...+++++.|+
T Consensus         1 m~va~~Q~~~~~~~~~~~n~~~i~~~i~~A~~~gadlivfPE~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~   78 (280)
T cd07574           1 VRVAAAQYPLRRYASFEEFAAKVEYWVAEAAGYGADLLVFPEYFTMELLSLLPEAIDGLDEAIRALA--ALTPDYVALFS   78 (280)
T ss_pred             CeeEEEEccCcCCCCHHHHHHHHHHHHHHHHHcCCCEEECchHhHHHHHHhCCcccccHHHHHHHHH--HHHHHHHHHHH
Confidence            69999999974  799999999999999999999999999999998853   22211   1111111  11246889999


Q ss_pred             HHHHhcCcEEEEeeeeeeeCCeeEEEEEEEccCCcEEEEEeecccCCCCCCCccccccccCccCCCCCeEEEeCCceEEE
Q 022660          155 EVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGI  234 (294)
Q Consensus       155 ~lA~~~~i~Iv~Gs~~~~~~~~~yNsa~vi~~~G~il~~y~K~~L~~~~~P~~~~f~E~~~f~~G~~~~v~~~~~grigi  234 (294)
                      ++|++++++|++|++++++++++||++++++++|.+ .+|+|+||++++       .+..+|.+|+++.+|+++++|+|+
T Consensus        79 ~~a~~~~i~iv~G~~~~~~~~~~yNs~~~i~~~G~v-~~y~K~~l~~~e-------~~~~~~~~G~~~~v~~~~~~~ig~  150 (280)
T cd07574          79 ELARKYGINIIAGSMPVREDGRLYNRAYLFGPDGTI-GHQDKLHMTPFE-------REEWGISGGDKLKVFDTDLGKIGI  150 (280)
T ss_pred             HHHHHhCCEEEecceEEcCCCCeEEEEEEECCCCCE-EEEeeeccCchh-------hhcccccCCCCceEEecCCccEEE
Confidence            999999999999976677788999999999999987 999999998742       344568999999999999999999


Q ss_pred             eeeccCcCcHHHHHHHHCCCeEEEEcCCCCCCCCHHHHHHHHHHHHHHhCCeeEeecc
Q 022660          235 GICYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQVLPHSPFV  292 (294)
Q Consensus       235 ~ICyD~~fpe~~r~la~~Gadlil~ps~~~~~~~~~~~~~l~~~RAiEn~~~vv~an~  292 (294)
                      +||||++||+++|.++.+|+|+|++|++++...+..+|....++||+||++|++++|.
T Consensus       151 ~IC~D~~fpe~~r~l~~~ga~ii~~ps~~~~~~~~~~~~~~~~arA~en~~~vv~an~  208 (280)
T cd07574         151 LICYDSEFPELARALAEAGADLLLVPSCTDTRAGYWRVRIGAQARALENQCYVVQSGT  208 (280)
T ss_pred             EEecccccHHHHHHHHHcCCCEEEECCcCCccccHHHHHHHHHHHHHhhCceEEEeCC
Confidence            9999999999999999999999999999876666678887889999999999999985

Some members of this subgroup are implicated in post-translational modification, as they contain an N-terminal GCN5-related N-acetyltransferase (GNAT) protein RimI family domain. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 12. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>cd07569 DCase N-carbamyl-D-amino acid amidohydrolase (DCase, class 6 nitrilases)

Probab=100.00  E-value=3e-37  Score=285.29  Aligned_cols=210  Identities=23%  Similarity=0.282  Sum_probs=170.0

Q ss_pred             CceEEEEEecccc-c--cHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCcc----chhhhhccCCCCcHHHHHH
Q 022660           81 AKFKVGLCQLSVT-A--DKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFP----VYAEDIDAGGDASPSTAML  153 (294)
Q Consensus        81 ~~~rValvQ~~v~-~--d~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~----~~~~~~~~~~~~~~~~~~l  153 (294)
                      ++||||++|++.. .  +.++|++++.+++++|++.|+|||||||++++||......    ...... .....++..+.+
T Consensus         2 ~~~rva~~Q~~~~~~~~~~~~n~~~i~~~i~~A~~~gadlivfPE~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l   80 (302)
T cd07569           2 RQVILAAAQMGPIARAETRESVVARLIALLEEAASRGAQLVVFPELALTTFFPRWYFPDEAELDSFF-ETEMPNPETQPL   80 (302)
T ss_pred             ceEEEEEEeeccccccCCHHHHHHHHHHHHHHHHhCCCcEEEcccccccCcccccccCChHHhhhhh-hhcCCChhHHHH
Confidence            3689999999754 3  8899999999999999999999999999999998653211    111100 111235788899


Q ss_pred             HHHHHhcCcEEEEeeeeee-eCC---eeEEEEEEEccCCcEEEEEeecccCCCC--CCCcc-ccccccCccCCC-CCeEE
Q 022660          154 SEVARLLKITIVGGSIPER-SGD---RLYNTCCVFGSDGKLIAKHRKIHLFDID--IPGKI-TFIESKSLTAGE-TPTIV  225 (294)
Q Consensus       154 ~~lA~~~~i~Iv~Gs~~~~-~~~---~~yNsa~vi~~~G~il~~y~K~~L~~~~--~P~~~-~f~E~~~f~~G~-~~~v~  225 (294)
                      .++|++++++|++| ++++ .++   ++||++++|+++|+++++|+|+||++++  .|... .+.|..+|.+|+ ++.+|
T Consensus        81 ~~~a~~~~i~iv~G-~~~~~~~~~~~~~yNsa~~i~~~G~i~~~y~K~~l~~~~e~~p~~~~~~~e~~~~~~G~~~~~v~  159 (302)
T cd07569          81 FDRAKELGIGFYLG-YAELTEDGGVKRRFNTSILVDKSGKIVGKYRKVHLPGHKEPEPYRPFQHLEKRYFEPGDLGFPVF  159 (302)
T ss_pred             HHHHHHhCeEEEEe-ceeecCCCCcceeeeEEEEECCCCCEeeeeeEEecCCCcccCcccccccccccccCCCCCCCceE
Confidence            99999999999999 5554 344   8999999999999999999999998765  23321 234778899999 89999


Q ss_pred             EeCCceEEEeeeccCcCcHHHHHHHHCCCeEEEEcCCCCCC---C------CHHHHHHHHHHHHHHhCCeeEeecc
Q 022660          226 DTDVGRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMT---T------GPLHWELLQRARATDNQVLPHSPFV  292 (294)
Q Consensus       226 ~~~~grigi~ICyD~~fpe~~r~la~~Gadlil~ps~~~~~---~------~~~~~~~l~~~RAiEn~~~vv~an~  292 (294)
                      +++++|||++||||.+|||++|.++.+|||+|++|+++.+.   .      ...+|....++||+||++||+++|.
T Consensus       160 ~~~~~rig~~IC~D~~fpe~~r~~a~~Ga~lll~~~~~~~~~~~~~~~~~~~~~~~~~~~~arA~en~~~vv~~n~  235 (302)
T cd07569         160 RVPGGIMGMCICNDRRWPETWRVMGLQGVELVLLGYNTPTHNPPAPEHDHLRLFHNLLSMQAGAYQNGTWVVAAAK  235 (302)
T ss_pred             ecCCceEEEEEeeccccchHHHHHHHCCCcEEEeecCCcccCCCccccchhhHHHHHHHHhhhhhcccceEEEeec
Confidence            99999999999999999999999999999999998764221   1      1246777889999999999999985

DCase hydrolyses N-carbamyl-D-amino acids to produce D-amino acids. It is an important biocatalyst in the pharmaceutical industry, producing useful D-amino acids for example in the preparation of beta-lactam antibiotics. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 6. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Agrobacterium radiobacter DCase forms a tetramer (dimer of dimers). Some DCases may form trimers.

>cd07585 nitrilase_7 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

Probab=100.00  E-value=2.6e-37  Score=279.28  Aligned_cols=194  Identities=36%  Similarity=0.468  Sum_probs=169.5

Q ss_pred             EEEEEecccc-ccHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHhcCc
Q 022660           84 KVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKI  162 (294)
Q Consensus        84 rValvQ~~v~-~d~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i  162 (294)
                      |||++|+++. +|.+.|++++++++++|++.|+|||||||++++||...+.....    .....++..+.++++|+++++
T Consensus         1 ~ia~~Q~~~~~~~~~~n~~~i~~~i~~a~~~gadliv~PE~~l~g~~~~~~~~~~----~~~~~~~~~~~l~~~a~~~~~   76 (261)
T cd07585           1 RIALVQFEARVGDKARNLAVIARWTRKAAAQGAELVCFPEMCITGYTHVRALSRE----AEVPDGPSTQALSDLARRYGL   76 (261)
T ss_pred             CEEEEEeecCCCCHHHHHHHHHHHHHHHHHcCCCEEEecccccccccCCcccchh----cccCCChHHHHHHHHHHHcCc
Confidence            6999999975 89999999999999999999999999999999999875432211    111235789999999999999


Q ss_pred             EEEEeeeeeeeCCeeEEEEEEEccCCcEEEEEeecccCCCCCCCccccccccCccCCCCCeEEEeCCceEEEeeeccCcC
Q 022660          163 TIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRF  242 (294)
Q Consensus       163 ~Iv~Gs~~~~~~~~~yNsa~vi~~~G~il~~y~K~~L~~~~~P~~~~f~E~~~f~~G~~~~v~~~~~grigi~ICyD~~f  242 (294)
                      +|++| +++++++++||++++++++|. +.+|+|+||++         .|..+|.+|+++.+|+++++|+|++||||.+|
T Consensus        77 ~i~~G-~~~~~~~~~yNs~~vi~~~g~-i~~y~K~~l~~---------~E~~~~~~G~~~~v~~~~~~rig~~IC~D~~~  145 (261)
T cd07585          77 TILAG-LIEKAGDRPYNTYLVCLPDGL-VHRYRKLHLFR---------REHPYIAAGDEYPVFATPGVRFGILICYDNHF  145 (261)
T ss_pred             EEEEe-ccccCCCceeEEEEEECCCCc-EeEEeeecCCc---------cccceEcCCCCCceEEcCCceEEEEEEcCCcC
Confidence            99999 567778899999999999997 58999999975         46778999999999999999999999999999


Q ss_pred             cHHHHHHHHCCCeEEEEcCCCCCCC---CHHHHHHHHHHHHHHhCCeeEeecc
Q 022660          243 QELAMIYGARGAHLICYPGAFNMTT---GPLHWELLQRARATDNQVLPHSPFV  292 (294)
Q Consensus       243 pe~~r~la~~Gadlil~ps~~~~~~---~~~~~~~l~~~RAiEn~~~vv~an~  292 (294)
                      ||++|.++++|||+|++|++++...   ....|....++||+||++|++++|.
T Consensus       146 pe~~r~l~~~gadlil~p~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~~n~  198 (261)
T cd07585         146 PENVRATALLGAEILFAPHATPGTTSPKGREWWMRWLPARAYDNGVFVAACNG  198 (261)
T ss_pred             cHHHHHHHHCCCCEEEECCccCCCCCcchHHHHHHHhHHHHhhcCeEEEEecc
Confidence            9999999999999999999876543   3457878889999999999999984

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>KOG0807 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]

Probab=100.00  E-value=5.3e-38  Score=271.89  Aligned_cols=205  Identities=37%  Similarity=0.575  Sum_probs=182.9

Q ss_pred             eEEEEEeccccccHHHHHHHHHHHHHHHHHCCCcEEEcCCCCC-CCCCCCCccchhhhhccCCCCcHHHHHHHHHHHhcC
Q 022660           83 FKVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWN-SPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLK  161 (294)
Q Consensus        83 ~rValvQ~~v~~d~~~n~~~i~~~i~~A~~~gadLVVfPE~~l-~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~  161 (294)
                      .+||++|+....|...|++...++|++|++.||++|.|||.+- -|-....-.+.++.     .++++.+.++++|++++
T Consensus        16 ~~vAv~Qm~S~~Dl~kNl~~~keLi~eA~~k~A~~iflPE~~dFi~~n~~esi~Lae~-----l~~k~m~~y~elar~~n   90 (295)
T KOG0807|consen   16 KRVAVAQMTSSNDLTKNLATCKELISEAAQKGAKLIFLPEAFDFIGQNPLESIELAEP-----LDGKFMEQYRELARSHN   90 (295)
T ss_pred             ceeEEEeeccchHHHHHHHHHHHHHHHHHHcCCCEEEcchhhhhhcCCcccceecccc-----cChHHHHHHHHHHHhcC
Confidence            6899999999999999999999999999999999999999852 11111111233333     24689999999999999


Q ss_pred             cEEEEeeeeeeeC---CeeEEEEEEEccCCcEEEEEeecccCCCCCCCccccccccCccCCCC-CeEEEeCCceEEEeee
Q 022660          162 ITIVGGSIPERSG---DRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGET-PTIVDTDVGRIGIGIC  237 (294)
Q Consensus       162 i~Iv~Gs~~~~~~---~~~yNsa~vi~~~G~il~~y~K~~L~~~~~P~~~~f~E~~~f~~G~~-~~v~~~~~grigi~IC  237 (294)
                      |++.+|...++.+   .+++|+-++++.+|+++..|+|.|||+.++|+.....|+....||.. ...++++.||+|..||
T Consensus        91 IwlSlgg~~~r~~~~~~k~~N~hl~id~~G~i~a~Y~KlHLFDVeipg~~~lkES~~t~pG~~i~~pv~tP~GklGlaIC  170 (295)
T KOG0807|consen   91 IWLSLGGHHERSDDGNQKLRNTHLLIDSKGEIRAEYQKLHLFDVEIPGGPRLKESNTTQPGTAIESPVDTPLGKLGLAIC  170 (295)
T ss_pred             eeEEeccccCCCccccceeeeeEEEEcCCchHHHHHhhhceeEeecCCCcccccccCcCCCcccCCccCCcccccceeee
Confidence            9998887777653   68999999999999999999999999999999999999999999988 5669999999999999


Q ss_pred             ccCcCcHHHHHHHHCCCeEEEEcCCCCCCCCHHHHHHHHHHHHHHhCCeeEeecc
Q 022660          238 YDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQVLPHSPFV  292 (294)
Q Consensus       238 yD~~fpe~~r~la~~Gadlil~ps~~~~~~~~~~~~~l~~~RAiEn~~~vv~an~  292 (294)
                      ||++|||++..+.+.||+|+.+|++|...+|..||+.+.|+||+|++||||+|.+
T Consensus       171 YDiRFpE~sl~LR~~gA~iLtyPSAFT~~TG~AHWEiLlRARAietQCYVvaaaQ  225 (295)
T KOG0807|consen  171 YDIRFPELSLKLRKMGAQILTYPSAFTIKTGEAHWEILLRARAIETQCYVVAAAQ  225 (295)
T ss_pred             eeccCchHHHHHHHcCCcEEeccchhhhcccHHHHHHHHHHHHhhcceEEEehhh
Confidence            9999999999999999999999999999999999999999999999999999876

>cd07578 nitrilase_1_R1 First nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

Probab=100.00  E-value=9.4e-37  Score=275.57  Aligned_cols=193  Identities=33%  Similarity=0.476  Sum_probs=162.8

Q ss_pred             eEEEEEecccc-ccHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHhcC
Q 022660           83 FKVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLK  161 (294)
Q Consensus        83 ~rValvQ~~v~-~d~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~  161 (294)
                      +|||++|++.. +|.+.|++++.+++++|+++|+|||||||++++||...+.........  ...++..+.++++|++++
T Consensus         1 ~ria~~Q~~~~~~d~~~n~~~~~~~i~~A~~~gadlivfPE~~l~gy~~~~~~~~~~~~~--~~~~~~~~~l~~~a~~~~   78 (258)
T cd07578           1 YKAAAIQFEPEMGEKERNIERLLALCEEAARAGARLIVTPEMATTGYCWYDRAEIAPFVE--PIPGPTTARFAELAREHD   78 (258)
T ss_pred             CeEEEEEecCccccHHHHHHHHHHHHHHHHhCCCCEEEcccccccCCCcCCHHHhhhhcc--cCCCHHHHHHHHHHHHcC
Confidence            58999999975 899999999999999999999999999999999998655432222111  113468899999999999


Q ss_pred             cEEEEeeeeeee--CCeeEEEEEEEccCCcEEEEEeecccCCCCCCCccccccccCccCCC-CCeEEEeCCceEEEeeec
Q 022660          162 ITIVGGSIPERS--GDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGE-TPTIVDTDVGRIGIGICY  238 (294)
Q Consensus       162 i~Iv~Gs~~~~~--~~~~yNsa~vi~~~G~il~~y~K~~L~~~~~P~~~~f~E~~~f~~G~-~~~v~~~~~grigi~ICy  238 (294)
                      +.|++| ++++.  ++++||++++|+++| ++..|+|+||+.         .|..+|.+|+ .+.+|+++++|+|++|||
T Consensus        79 i~ii~G-~~~~~~~~~~~yNs~~vi~~~g-~~~~y~K~h~~~---------~e~~~~~~g~~~~~v~~~~~~rig~~IC~  147 (258)
T cd07578          79 CYIVVG-LPEVDSRSGIYYNSAVLIGPSG-VIGRHRKTHPYI---------SEPKWAADGDLGHQVFDTEIGRIALLICM  147 (258)
T ss_pred             cEEEEe-cceecCCCCCeeEEEEEECCCC-cEEeEeeecCCc---------ccccccCCCCCCceEEECCCccEEEEEee
Confidence            999999 45554  468999999999998 789999999853         4667889998 588999999999999999


Q ss_pred             cCcCcHHHHHHHHCCCeEEEEcCCCCCCCCH-HHHHHHHHHHHHHhCCeeEeecc
Q 022660          239 DIRFQELAMIYGARGAHLICYPGAFNMTTGP-LHWELLQRARATDNQVLPHSPFV  292 (294)
Q Consensus       239 D~~fpe~~r~la~~Gadlil~ps~~~~~~~~-~~~~~l~~~RAiEn~~~vv~an~  292 (294)
                      |++|||++|.++++||++|++|++|...... .+|    ++||+||++|+|++|.
T Consensus       148 D~~fpe~~r~~~~~ga~ll~~ps~~~~~~~~~~~~----~~rA~en~~~vv~an~  198 (258)
T cd07578         148 DIHFFETARLLALGGADVICHISNWLAERTPAPYW----INRAFENGCYLIESNR  198 (258)
T ss_pred             CCCchHHHHHHHHcCCCEEEEcCCCCCCCCcchHH----HHhhhcCCeEEEEecc
Confidence            9999999999999999999999998654332 234    5899999999999985

Members of this subgroup have two nitrilase domains. This is the first of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>cd07577 Ph0642_like Pyrococcus horikoshii Ph0642 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases)

Probab=100.00  E-value=7.2e-37  Score=276.36  Aligned_cols=190  Identities=33%  Similarity=0.486  Sum_probs=163.0

Q ss_pred             EEEEEecccc-ccHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHhcCc
Q 022660           84 KVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKI  162 (294)
Q Consensus        84 rValvQ~~v~-~d~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i  162 (294)
                      |||++|++.. +|.+.|++++.+++++|.   +|||||||++++||.........+... ...++++++.|+++|+++++
T Consensus         1 kia~~Q~~~~~~d~~~N~~~~~~~i~~a~---adlvvfPE~~l~gy~~~~~~~~~~~~~-~~~~~~~~~~l~~~a~~~~i   76 (259)
T cd07577           1 KVGYVQFNPKFGEVEKNLKKVESLIKGVE---ADLIVLPELFNTGYAFTSKEEVASLAE-SIPDGPTTRFLQELARETGA   76 (259)
T ss_pred             CEEEEEccCccCCHHHHHHHHHHHHHHhC---CCEEEcccccccCCCcCCHHHHHHhhc-ccCCChHHHHHHHHHHHhCc
Confidence            6899999975 899999999999998873   999999999999998643222111111 11135789999999999999


Q ss_pred             EEEEeeeeeeeCCeeEEEEEEEccCCcEEEEEeecccCCCCCCCccccccccCccCCC-CCeEEEeCCceEEEeeeccCc
Q 022660          163 TIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGE-TPTIVDTDVGRIGIGICYDIR  241 (294)
Q Consensus       163 ~Iv~Gs~~~~~~~~~yNsa~vi~~~G~il~~y~K~~L~~~~~P~~~~f~E~~~f~~G~-~~~v~~~~~grigi~ICyD~~  241 (294)
                      +|++| .++++++++||++++++++| ++.+|+|+||++         .|..+|.+|+ .+.+|+++++|+|++||||.+
T Consensus        77 ~ii~G-~~~~~~~~~yNs~~vi~~~G-i~~~y~K~~l~~---------~e~~~~~~G~~~~~~~~~~~~~ig~~IC~D~~  145 (259)
T cd07577          77 YIVAG-LPERDGDKFYNSAVVVGPEG-YIGIYRKTHLFY---------EEKLFFEPGDTGFRVFDIGDIRIGVMICFDWY  145 (259)
T ss_pred             EEEec-ceeccCCceEEEEEEECCCc-cEeeEeeccCCh---------hhhccccCCCCCCceEEeCCcEEEEEEEcCcc
Confidence            99999 66777889999999999999 899999999964         5677899999 799999999999999999999


Q ss_pred             CcHHHHHHHHCCCeEEEEcCCCCCCCCHHHHHHHHHHHHHHhCCeeEeecc
Q 022660          242 FQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQVLPHSPFV  292 (294)
Q Consensus       242 fpe~~r~la~~Gadlil~ps~~~~~~~~~~~~~l~~~RAiEn~~~vv~an~  292 (294)
                      |||++|.++++|||+|++|++|..    ..|..+.++||+||++|+|++|.
T Consensus       146 fpe~~r~~~~~Gadli~~ps~~~~----~~~~~~~~~rA~en~~~vv~~n~  192 (259)
T cd07577         146 FPEAARTLALKGADIIAHPANLVL----PYCPKAMPIRALENRVFTITANR  192 (259)
T ss_pred             cchHHHHHHHcCCCEEEECCccCC----chhhhhhhHhhhhcCceEEEEec
Confidence            999999999999999999999752    25777789999999999999985

Uncharacterized subgroup of the nitrilase superfamily. This superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. Pyrococcus horikoshii Ph0642 is a hypothetical protein belonging to this subgroup. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). This subgroup was classified as belonging to class 13, which represents proteins that at the time were difficult to place in a distinct similarity group. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>cd07575 Xc-1258_like Xanthomonas campestris XC1258 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases)

Probab=100.00  E-value=2.1e-36  Score=272.57  Aligned_cols=191  Identities=28%  Similarity=0.422  Sum_probs=166.2

Q ss_pred             eEEEEEecccc-ccHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHhcC
Q 022660           83 FKVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLK  161 (294)
Q Consensus        83 ~rValvQ~~v~-~d~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~  161 (294)
                      ||||++|+++. +|++.|++++++++++|++ |+|||||||++++||...+. ..++.     ..++.++.++++|++++
T Consensus         1 mkia~~Q~~~~~~d~~~N~~~~~~~i~~a~~-gadlvvfPE~~l~g~~~~~~-~~~~~-----~~~~~~~~l~~la~~~~   73 (252)
T cd07575           1 LKIALIQTDLVWEDPEANLAHFEEKIEQLKE-KTDLIVLPEMFTTGFSMNAE-ALAEP-----MNGPTLQWMKAQAKKKG   73 (252)
T ss_pred             CEEEEEEeecCcCCHHHHHHHHHHHHHHhhc-CCCEEEeCCcCcCCCCccHH-Hhhcc-----cCChHHHHHHHHHHHCC
Confidence            69999999986 8999999999999999987 99999999999999976432 12222     23578999999999999


Q ss_pred             cEEEEeeeeeeeCCeeEEEEEEEccCCcEEEEEeecccCCCCCCCccccccccCccCCCCCeEEEeCCceEEEeeeccCc
Q 022660          162 ITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIR  241 (294)
Q Consensus       162 i~Iv~Gs~~~~~~~~~yNsa~vi~~~G~il~~y~K~~L~~~~~P~~~~f~E~~~f~~G~~~~v~~~~~grigi~ICyD~~  241 (294)
                      +.|++| +++++++++||++++++++|++. .|+|+||+++       +.|..+|.+|++..+|+++++|+|++||||.+
T Consensus        74 i~i~~~-~~~~~~~~~yNs~~~i~~~G~i~-~y~K~~l~~~-------~~e~~~~~~G~~~~~~~~~~~~ig~~IC~D~~  144 (252)
T cd07575          74 AAITGS-LIIKEGGKYYNRLYFVTPDGEVY-HYDKRHLFRM-------AGEHKVYTAGNERVIVEYKGWKILLQVCYDLR  144 (252)
T ss_pred             eEEEEE-EEEccCCceEEEEEEECCCCCEE-EEeeeecCCC-------CCccceecCCCCceEEEECCEEEEEEEEeccC
Confidence            988876 67777889999999999999864 9999999764       26778899999999999999999999999999


Q ss_pred             CcHHHHHHHHCCCeEEEEcCCCCCCCCHHHHHHHHHHHHHHhCCeeEeecc
Q 022660          242 FQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQVLPHSPFV  292 (294)
Q Consensus       242 fpe~~r~la~~Gadlil~ps~~~~~~~~~~~~~l~~~RAiEn~~~vv~an~  292 (294)
                      |||++|.++.  ||+|++|++|+.. ...+|..+.++||+||++||+.+|.
T Consensus       145 ~pe~~r~~~~--a~lil~~s~~~~~-~~~~~~~~~~arA~en~~~vv~~n~  192 (252)
T cd07575         145 FPVWSRNTND--YDLLLYVANWPAP-RRAAWDTLLKARAIENQAYVIGVNR  192 (252)
T ss_pred             ChHHHHhhcC--CCEEEEeCCCCCC-chHHHHHHhHHHHhhccceEEEecc
Confidence            9999998753  9999999998654 4578988889999999999999985

Uncharacterized subgroup belonging to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup either represents a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. XC1258 is a homotetramer.

>cd07197 nitrilase Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes

Probab=100.00  E-value=3.7e-36  Score=269.08  Aligned_cols=196  Identities=43%  Similarity=0.644  Sum_probs=172.0

Q ss_pred             EEEEecccc-ccHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHhcCcE
Q 022660           85 VGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKIT  163 (294)
Q Consensus        85 ValvQ~~v~-~d~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~  163 (294)
                      ||++|+++. +|.++|++++.+.+++|.++|+|||||||++++||...+........  ....+...+.++++|+++++.
T Consensus         1 ia~~Q~~~~~~~~~~n~~~~~~~i~~a~~~g~dlvvfPE~~l~g~~~~~~~~~~~~~--~~~~~~~~~~l~~~a~~~~i~   78 (253)
T cd07197           1 IAAVQLAPKIGDVEANLAKALRLIKEAAEQGADLIVLPELFLTGYSFESAKEDLDLA--EELDGPTLEALAELAKELGIY   78 (253)
T ss_pred             CEEEEccCCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCccccCCccccchhhhhhc--ccCCchHHHHHHHHHHHhCeE
Confidence            689999987 99999999999999999999999999999999999876533211000  112346899999999999999


Q ss_pred             EEEeeeeeeeCCeeEEEEEEEccCCcEEEEEeecccCCCCCCCccccccccCccCCCCCeEEEeCCceEEEeeeccCcCc
Q 022660          164 IVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQ  243 (294)
Q Consensus       164 Iv~Gs~~~~~~~~~yNsa~vi~~~G~il~~y~K~~L~~~~~P~~~~f~E~~~f~~G~~~~v~~~~~grigi~ICyD~~fp  243 (294)
                      +++|+ ++++++++||++++++++|+++.+|+|+||++        |.|..+|.+|+...+|+++++|+|++||||.+||
T Consensus        79 ii~G~-~~~~~~~~~N~~~~i~~~G~i~~~~~K~~l~~--------~~E~~~~~~g~~~~~f~~~~~~ig~~IC~d~~~~  149 (253)
T cd07197          79 IVAGI-AEKDGDKLYNTAVVIDPDGEIIGKYRKIHLFD--------FGERRYFSPGDEFPVFDTPGGKIGLLICYDLRFP  149 (253)
T ss_pred             EEeee-EEccCCceEEEEEEECCCCeEEEEEEEeecCC--------CcccceecCCCCCceEEcCCceEEEEEEecCCCc
Confidence            99995 57777899999999999999999999999976        3677789999999999999999999999999999


Q ss_pred             HHHHHHHHCCCeEEEEcCCCCCCCCHHHHHHHHHHHHHHhCCeeEeecc
Q 022660          244 ELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQVLPHSPFV  292 (294)
Q Consensus       244 e~~r~la~~Gadlil~ps~~~~~~~~~~~~~l~~~RAiEn~~~vv~an~  292 (294)
                      +..+.+.++|+|+|++|+++.+.. ..+|..+.+.||+||++|++++|.
T Consensus       150 ~~~~~~~~~g~dli~~ps~~~~~~-~~~~~~~~~~~A~e~~~~vv~~n~  197 (253)
T cd07197         150 ELARELALKGADIILVPAAWPTAR-REHWELLLRARAIENGVYVVAANR  197 (253)
T ss_pred             HHHHHHHHCCCcEEEECCcCCCcc-hHHHHHHHHHHHHHhCCeEEEecC
Confidence            999999999999999999976553 678999999999999999999995

This superfamily (also known as the C-N hydrolase superfamily) contains hydrolases that break carbon-nitrogen bonds; it includes nitrilases, cyanide dihydratases, aliphatic amidases, N-terminal amidases, beta-ureidopropionases, biotinidases, pantotheinase, N-carbamyl-D-amino acid amidohydrolases, the glutaminase domain of glutamine-dependent NAD+ synthetase, apolipoprotein N-acyltransferases, and N-carbamoylputrescine amidohydrolases, among others. These enzymes depend on a Glu-Lys-Cys catalytic triad, and work through a thiol acylenzyme intermediate. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. These oligomers include dimers, tetramers, hexamers, octamers, tetradecamers, octadecamers, as well as variable length helical arrangements and homo-oligomeric spirals. These proteins have roles in vitamin and

>cd07571 ALP_N-acyl_transferase Apolipoprotein N-acyl transferase (class 9 nitrilases)

Probab=100.00  E-value=1.6e-36  Score=276.41  Aligned_cols=195  Identities=21%  Similarity=0.282  Sum_probs=167.4

Q ss_pred             eEEEEEecccc-c------cHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHH
Q 022660           83 FKVGLCQLSVT-A------DKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSE  155 (294)
Q Consensus        83 ~rValvQ~~v~-~------d~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~  155 (294)
                      +|||++|+++. .      |.+.|++++.+++++|+++|+|||||||++++||...              .++.++.+++
T Consensus         1 ~~ia~~Q~~~~~~~~~~~~d~~~nl~~~~~~i~~a~~~ga~lvvfPE~~l~g~~~~--------------~~~~~~~l~~   66 (270)
T cd07571           1 LRVALVQGNIPQDEKWDPEQRQATLDRYLDLTRELADEKPDLVVWPETALPFDLQR--------------DPDALARLAR   66 (270)
T ss_pred             CeEEEEeCCCCcccccCHHHHHHHHHHHHHHHhhcccCCCCEEEecCCcCCccccc--------------CHHHHHHHHH
Confidence            58999999975 3      7899999999999999999999999999999998521              2468999999


Q ss_pred             HHHhcCcEEEEeeeeeeeC--CeeEEEEEEEccCCcEEEEEeecccCCCCC--CCcccc--------ccccCccCCCCCe
Q 022660          156 VARLLKITIVGGSIPERSG--DRLYNTCCVFGSDGKLIAKHRKIHLFDIDI--PGKITF--------IESKSLTAGETPT  223 (294)
Q Consensus       156 lA~~~~i~Iv~Gs~~~~~~--~~~yNsa~vi~~~G~il~~y~K~~L~~~~~--P~~~~f--------~E~~~f~~G~~~~  223 (294)
                      +|+++++++++|. .++++  +++||++++++++|+++.+|+|+||++++.  |....+        .|..+|.+|++..
T Consensus        67 ~ak~~~i~ii~G~-~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~~L~p~~e~~p~~~~~~~~~~~~~~e~~~~~~G~~~~  145 (270)
T cd07571          67 AARAVGAPLLTGA-PRREPGGGRYYNSALLLDPGGGILGRYDKHHLVPFGEYVPLRDLLRFLGLLFDLPMGDFSPGTGPQ  145 (270)
T ss_pred             HHHhcCCeEEEee-eeeccCCCceEEEEEEECCCCCCcCcEeeeeccCCCCCcCcHHHHHHHHHhcccccCCCCCCCCCC
Confidence            9999999999994 45544  589999999999999999999999988652  322111        3677899999999


Q ss_pred             EEEeCC-ceEEEeeeccCcCcHHHHHHHHCCCeEEEEcCCCC---CCCCHHHHHHHHHHHHHHhCCeeEeecc
Q 022660          224 IVDTDV-GRIGIGICYDIRFQELAMIYGARGAHLICYPGAFN---MTTGPLHWELLQRARATDNQVLPHSPFV  292 (294)
Q Consensus       224 v~~~~~-grigi~ICyD~~fpe~~r~la~~Gadlil~ps~~~---~~~~~~~~~~l~~~RAiEn~~~vv~an~  292 (294)
                      +|++++ +|+|++||||.+|||.+|.++++|||+|++|+++.   ......+|..++++||+||++|||++|.
T Consensus       146 vf~~~~~~r~g~~IC~D~~fpe~~r~~~~~ga~iil~ps~~~~~~~~~~~~~~~~~~~arA~en~~~vv~~n~  218 (270)
T cd07571         146 PLLLGGGVRVGPLICYESIFPELVRDAVRQGADLLVNITNDAWFGDSAGPYQHLAMARLRAIETGRPLVRAAN  218 (270)
T ss_pred             ccccCCCceEEEEEEeeeeChHHHHhhcccCCCEEEEcCcccccCCCcchHHHHHHHHHHHHHhCCCEEEEcC
Confidence            999999 99999999999999999999999999999999832   2335667788889999999999999985

ALP N-acyl transferase (Lnt), is an essential membrane-bound enzyme in gram-negative bacteria, which catalyzes the N-acylation of apolipoproteins, the final step in lipoprotein maturation. This is a reverse amidase (i.e. condensation) reaction. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 9.

>cd07586 nitrilase_8 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

Probab=100.00  E-value=5.9e-36  Score=271.49  Aligned_cols=195  Identities=28%  Similarity=0.409  Sum_probs=163.7

Q ss_pred             EEEEEecccc-ccHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCcc-chhhhhccCCCCcHHHHHHHHHHHhcC
Q 022660           84 KVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFP-VYAEDIDAGGDASPSTAMLSEVARLLK  161 (294)
Q Consensus        84 rValvQ~~v~-~d~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~-~~~~~~~~~~~~~~~~~~l~~lA~~~~  161 (294)
                      |||++|++.. +|.+.|++++++++++|+++|+|||||||++++||...+.. ..+..     ..++.++.|+++++  +
T Consensus         1 kia~~q~~~~~~~~~~n~~~~~~~i~~A~~~ga~liv~PE~~~~g~~~~~~~~~~~~~-----~~~~~~~~l~~~a~--~   73 (269)
T cd07586           1 RVAIAQIDPVLGDVEENLEKHLEIIETARERGADLVVFPELSLTGYNLGDLVYEVAMH-----ADDPRLQALAEASG--G   73 (269)
T ss_pred             CEEEEecCCccCcHHHHHHHHHHHHHHHHHcCCCEEEecchhccCCCchhhhhhhhcc-----cchHHHHHHHHHcC--C
Confidence            6999999976 89999999999999999999999999999999999875421 11111     12356666666653  7


Q ss_pred             cEEEEeeeeeee-CCeeEEEEEEEccCCcEEEEEeecccCCCCCCCccccccccCccCCCCCeEEEeCCceEEEeeeccC
Q 022660          162 ITIVGGSIPERS-GDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDI  240 (294)
Q Consensus       162 i~Iv~Gs~~~~~-~~~~yNsa~vi~~~G~il~~y~K~~L~~~~~P~~~~f~E~~~f~~G~~~~v~~~~~grigi~ICyD~  240 (294)
                      +.+++|+ +++. ++++||+++++ ++|+++++|+|+||     |.+..|.|..+|.+|+++.+|+++++|||++||||.
T Consensus        74 ~~ii~G~-~~~~~~~~~yNt~~vi-~~G~i~~~y~K~~l-----p~~~~~~e~~~~~~G~~~~vf~~~~~~ig~~IC~D~  146 (269)
T cd07586          74 ICVVFGF-VEEGRDGRFYNSAAYL-EDGRVVHVHRKVYL-----PTYGLFEEGRYFAPGSHLRAFDTRFGRAGVLICEDA  146 (269)
T ss_pred             CEEEEeC-eEEcCCCcEEEEEEEe-cCCEEEEEEEeEeC-----CCCCccceeeeecCCCcceEEEeCCeEEEEEEEecc
Confidence            9999995 4554 58999999999 89999999999998     333345677889999999999999999999999999


Q ss_pred             cCcHHHHHHHHCCCeEEEEcCCCCCCC------CHHHHHHHHHHHHHHhCCeeEeecc
Q 022660          241 RFQELAMIYGARGAHLICYPGAFNMTT------GPLHWELLQRARATDNQVLPHSPFV  292 (294)
Q Consensus       241 ~fpe~~r~la~~Gadlil~ps~~~~~~------~~~~~~~l~~~RAiEn~~~vv~an~  292 (294)
                      +||++.+.++++|||+|++|+++++..      ...+|..+.++||+||++|||+||.
T Consensus       147 ~fp~~~~~~~~~ga~lil~ps~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~an~  204 (269)
T cd07586         147 WHPSLPYLLALDGADVIFIPANSPARGVGGDFDNEENWETLLKFYAMMNGVYVVFANR  204 (269)
T ss_pred             CCcHHHHHHHHCCCCEEEEeCCCccccCccccchhHHHHHHHHHHHHHhCCeEEEEee
Confidence            999999999999999999999975531      1357888999999999999999995

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>cd07582 nitrilase_4 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

Probab=100.00  E-value=1.2e-35  Score=273.62  Aligned_cols=207  Identities=23%  Similarity=0.263  Sum_probs=164.5

Q ss_pred             EEEEEecccc-----ccHHHHHHHHHHHHHHHHH-----CCCcEEEcCCCCCCCCCCCCccchhhhhc-cCCCCcHHHHH
Q 022660           84 KVGLCQLSVT-----ADKERNIAHARRAIEEAAE-----KGAKLILLPEIWNSPYSHDSFPVYAEDID-AGGDASPSTAM  152 (294)
Q Consensus        84 rValvQ~~v~-----~d~~~n~~~i~~~i~~A~~-----~gadLVVfPE~~l~gy~~~~~~~~~~~~~-~~~~~~~~~~~  152 (294)
                      .++.+|+.+.     +|++.|++++.+++++|++     .|+|||||||++++||...+........+ +...+++.++.
T Consensus         2 ~~~~~~~~~~~~~~~~d~~~Nl~~~~~~i~~A~~~~~~~~gadlivfPE~~ltGy~~~~~~~~~~~~~~a~~~~~~~~~~   81 (294)
T cd07582           2 TALALQPTCEAAEDRADILANIDRINEQIDAAVGFSGPGLPVRLVVLPEYALQGFPMGEPREVWQFDKAAIDIPGPETEA   81 (294)
T ss_pred             eeEEEecccccccChhhHHHHHHHHHHHHHHHHHhcccCCCceEEEcCccccccCCcccchhhhhhhhccccCCCHHHHH
Confidence            5678898753     7999999999999999987     47999999999999998754321110000 11124689999


Q ss_pred             HHHHHHhcCcEEEEeeeeeeeC---CeeEEEEEEEccCCcEEEEEeecccCCCC---CCCcccccc-ccCccCC-C-CCe
Q 022660          153 LSEVARLLKITIVGGSIPERSG---DRLYNTCCVFGSDGKLIAKHRKIHLFDID---IPGKITFIE-SKSLTAG-E-TPT  223 (294)
Q Consensus       153 l~~lA~~~~i~Iv~Gs~~~~~~---~~~yNsa~vi~~~G~il~~y~K~~L~~~~---~P~~~~f~E-~~~f~~G-~-~~~  223 (294)
                      |+++|++++++|++|+. ++++   +++||++++++++|+++++|+|+||+..+   .|.. .+.| ..++.+| + .+.
T Consensus        82 l~~~A~~~~i~iv~G~~-e~~~~~~~~~yNsa~~i~~~G~i~~~yrK~hl~~~~~e~~p~~-~~~~~~~~~g~g~~~~~~  159 (294)
T cd07582          82 LGEKAKELNVYIAANAY-ERDPDFPGLYFNTAFIIDPSGEIILRYRKMNSLAAEGSPSPHD-VWDEYIEVYGYGLDALFP  159 (294)
T ss_pred             HHHHHHHcCEEEEEeee-eecCCCCCcEEEEEEEECCCCcEEEEEeeeccCccccccCccc-hhhhhcccCCCcccccce
Confidence            99999999999999954 5543   68999999999999999999999997521   1211 1122 1234555 3 368


Q ss_pred             EEEeCCceEEEeeeccCcCcHHHHHHHHCCCeEEEEcCCCCCCCCHHHHHHHHHHHHHHhCCeeEeecc
Q 022660          224 IVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQVLPHSPFV  292 (294)
Q Consensus       224 v~~~~~grigi~ICyD~~fpe~~r~la~~Gadlil~ps~~~~~~~~~~~~~l~~~RAiEn~~~vv~an~  292 (294)
                      +++++++|||++||||.+|||++|.++++|||+|++|++|+......+|+.+.++||+||++|||++|.
T Consensus       160 v~~~~~~~iG~~ICyD~~fpe~~r~la~~Gadlil~psa~~~~~~~~~~~~~~~arA~en~~~vv~aN~  228 (294)
T cd07582         160 VADTEIGNLGCLACEEGLYPEVARGLAMNGAEVLLRSSSEVPSVELDPWEIANRARALENLAYVVSANS  228 (294)
T ss_pred             eecCCCceEEEEEeecccChHHHHHHHHCCCcEEEEcCCCCCCcchhhHHHHHHHHHHhcCCEEEEecc
Confidence            999999999999999999999999999999999999999876555578988899999999999999985

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>PRK13286 amiE acylamide amidohydrolase; Provisional

Probab=100.00  E-value=8.4e-36  Score=279.92  Aligned_cols=199  Identities=21%  Similarity=0.210  Sum_probs=165.6

Q ss_pred             CCCCceEEEEEecccc-----ccHHHHHHHHHHHHHHHH--HCCCcEEEcCCCCCCCCCCCC--ccchhhhhccCCCCcH
Q 022660           78 PPVAKFKVGLCQLSVT-----ADKERNIAHARRAIEEAA--EKGAKLILLPEIWNSPYSHDS--FPVYAEDIDAGGDASP  148 (294)
Q Consensus        78 ~~~~~~rValvQ~~v~-----~d~~~n~~~i~~~i~~A~--~~gadLVVfPE~~l~gy~~~~--~~~~~~~~~~~~~~~~  148 (294)
                      .+.+.++||++|.+++     .|...|++++.+.+++|+  ..|+|||||||++++||.++.  +.+.+..     .+++
T Consensus         8 ~~~~~l~va~vQ~~~p~~~~~~di~~Nl~~i~~~i~~a~~~~~gadLVVfPE~~l~G~~y~~~~~~~~a~~-----i~g~   82 (345)
T PRK13286          8 SSNDTVGVAVVNYKMPRLHTKAEVLENARKIADMIVGMKQGLPGMDLVIFPEYSTHGIMYDRQEMYETAST-----IPGE   82 (345)
T ss_pred             CCCCceEEEEEEcCCCccCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEcCCccccCCCcChHHHHHhccc-----CCCH
Confidence            4556799999999843     688999999999999987  458999999999999976543  2222222     2457


Q ss_pred             HHHHHHHHHHhcCcEEEEeeeeee----eCCeeEEEEEEEccCCcEEEEEeecccCCCCCCCccccccccCccCCCCCeE
Q 022660          149 STAMLSEVARLLKITIVGGSIPER----SGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTI  224 (294)
Q Consensus       149 ~~~~l~~lA~~~~i~Iv~Gs~~~~----~~~~~yNsa~vi~~~G~il~~y~K~~L~~~~~P~~~~f~E~~~f~~G~~~~v  224 (294)
                      ..+.|+++|+++++++++|...++    .++++||++++|+++|+++.+|+|+|++.          +...|.+|+...+
T Consensus        83 ~~~~l~~~A~~~~i~~v~~i~ge~~~~~~~~~~yNta~vi~~~G~i~~~YrK~~p~~----------~~e~~~pG~~~~v  152 (345)
T PRK13286         83 ETAIFAEACRKAKVWGVFSLTGERHEEHPRKAPYNTLILINDKGEIVQKYRKIMPWC----------PIEGWYPGDCTYV  152 (345)
T ss_pred             HHHHHHHHHHHcCEEEEEeccccccccCCCCceeEEEEEECCCCeEEEEEEeecCCc----------hhhceecCCCCEE
Confidence            899999999999999887633233    23569999999999999999999999854          2235789999999


Q ss_pred             EEeCCc-eEEEeeeccCcCcHHHHHHHHCCCeEEEEcCCCCCCCCHHHHHHHHHHHHHHhCCeeEeecc
Q 022660          225 VDTDVG-RIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQVLPHSPFV  292 (294)
Q Consensus       225 ~~~~~g-rigi~ICyD~~fpe~~r~la~~Gadlil~ps~~~~~~~~~~~~~l~~~RAiEn~~~vv~an~  292 (294)
                      ++++.| |||++||||.+|||++|.++++|||+|++|++|... ..++|..++++||+||++|||.+|.
T Consensus       153 ~~~~~G~kiG~lIC~D~~fPE~~R~la~~GAelii~psa~~~~-~~~~~~~~~rarA~eN~~yVv~aN~  220 (345)
T PRK13286        153 SEGPKGLKISLIICDDGNYPEIWRDCAMKGAELIVRCQGYMYP-AKEQQVLVAKAMAWANNCYVAVANA  220 (345)
T ss_pred             EeCCCCcEEEEEEEecccChHHHHHHHHcCCeEEEEccccCCC-chHHHHHHHHHHHHHCCCEEEEEec
Confidence            999755 999999999999999999999999999999997653 5679999999999999999999996

>cd07566 ScNTA1_like Saccharomyces cerevisiae N-terminal amidase NTA1, and related proteins (class 3 nitrilases)

Probab=100.00  E-value=6.2e-36  Score=275.73  Aligned_cols=205  Identities=22%  Similarity=0.268  Sum_probs=156.3

Q ss_pred             EEEEEecccc-ccHHHHHHHHHHHHHHHHH----CCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHH
Q 022660           84 KVGLCQLSVT-ADKERNIAHARRAIEEAAE----KGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVAR  158 (294)
Q Consensus        84 rValvQ~~v~-~d~~~n~~~i~~~i~~A~~----~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~  158 (294)
                      |||++|+++. +|++.|++++++++++|++    .|+|||||||++++||...+......... ...+++..+.++++|+
T Consensus         1 rIA~vQ~~~~~~d~~~Nl~~~~~~i~~A~~~~~~~gadLIVfPEl~ltGY~~~~~~~~~~~ae-~~~~g~~~~~l~~lAk   79 (295)
T cd07566           1 RIACLQLNPQIGQVEENLSRAWELLDKTKKRAKLKKPDILVLPELALTGYNFHSLEHIKPYLE-PTTSGPSFEWAREVAK   79 (295)
T ss_pred             CEEEEECCCccCCHHHHHHHHHHHHHHHHhhccCCCCcEEEcCCCCcccCCcccHHHHHHHHH-hcCCCHHHHHHHHHHH
Confidence            6999999976 8999999999999999988    89999999999999998654322111111 1123578899999999


Q ss_pred             hcCcEEEEeeeeeeeC---CeeEEEEEEEccCCcEEEEEeecccCCCCCCCccccccc-cCcc------CCCCCeE--EE
Q 022660          159 LLKITIVGGSIPERSG---DRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIES-KSLT------AGETPTI--VD  226 (294)
Q Consensus       159 ~~~i~Iv~Gs~~~~~~---~~~yNsa~vi~~~G~il~~y~K~~L~~~~~P~~~~f~E~-~~f~------~G~~~~v--~~  226 (294)
                      +++++|++| .+++.+   +++|||+++|+++|+++++|+|+||++.+.++.  +.|. .++.      +|++...  +.
T Consensus        80 ~~~i~Iv~G-~~e~~~~~~~~~yNta~vi~~~G~ii~~YrK~HL~~~~~~~~--~~e~~~~~~~~~~~~~G~~~~~~~~~  156 (295)
T cd07566          80 KFNCHVVIG-YPEKVDESSPKLYNSALVVDPEGEVVFNYRKSFLYYTDEEWG--CEENPGGFQTFPLPFAKDDDFDGGSV  156 (295)
T ss_pred             hcCCEEEEe-eeEecCCCCCceEEEEEEEcCCCeEEEEEeccccCCCCcccc--cCCCCCcccccccccccccccccccc
Confidence            999999999 456543   489999999999999999999999987642210  1121 1222      7776443  33


Q ss_pred             eCCceEEEeeeccCc---C--c----HHHHHHHHCCCeEEEEcCCCCCCCCH--------HHH---HHHHHHHH------
Q 022660          227 TDVGRIGIGICYDIR---F--Q----ELAMIYGARGAHLICYPGAFNMTTGP--------LHW---ELLQRARA------  280 (294)
Q Consensus       227 ~~~grigi~ICyD~~---f--p----e~~r~la~~Gadlil~ps~~~~~~~~--------~~~---~~l~~~RA------  280 (294)
                      +.++|||++||||++   |  |    |++|.++.+|||||++|++|+...++        .+|   ..+.++||      
T Consensus       157 ~~~~kiG~~ICyDl~~~rF~~P~~~~E~~r~la~~Gadii~~paaw~~~~~~~~~~~~~~~~~~~~~~~~~~ra~~~~a~  236 (295)
T cd07566         157 DVTLKTSIGICMDLNPYKFEAPFTDFEFATHVLDNGTELIICPMAWLHSLSPTELTVLPQEPDTETVSYWLQRFEPLRAE  236 (295)
T ss_pred             CCcceeEEEEEecCCcccccCCcchHHHHHHHHHCCCCEEEEechhcCCCCcccccccCCCcchhHHHHHHHhhcccccC
Confidence            457899999999996   7  5    99999999999999999999754331        123   23345555      


Q ss_pred             HHhCCeeEeecc
Q 022660          281 TDNQVLPHSPFV  292 (294)
Q Consensus       281 iEn~~~vv~an~  292 (294)
                      +||++|||++|.
T Consensus       237 ~eN~~~vv~~Nr  248 (295)
T cd07566         237 PLEGTQVVFCNR  248 (295)
T ss_pred             CCCceEEEEEec
Confidence            499999999995

Saccharomyces cerevisiae NTA1 functions in the N-end rule protein degradation pathway. It specifically deaminates the N-terminal asparagine and glutamine residues of substrates of this pathway, to aspartate and glutamate respectively, these latter are the destabilizing residues. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 3.

>PRK13287 amiF formamidase; Provisional

Probab=100.00  E-value=3.2e-35  Score=275.16  Aligned_cols=198  Identities=23%  Similarity=0.350  Sum_probs=167.1

Q ss_pred             CCCCceEEEEEecccc-----ccHHHHHHHHHHHHHHHHHC--CCcEEEcCCCCCCCCCCCCcc--chhhhhccCCCCcH
Q 022660           78 PPVAKFKVGLCQLSVT-----ADKERNIAHARRAIEEAAEK--GAKLILLPEIWNSPYSHDSFP--VYAEDIDAGGDASP  148 (294)
Q Consensus        78 ~~~~~~rValvQ~~v~-----~d~~~n~~~i~~~i~~A~~~--gadLVVfPE~~l~gy~~~~~~--~~~~~~~~~~~~~~  148 (294)
                      .+.++|+||++|++++     +|.+.|++++.+++++|++.  |+|||||||++++||..+.+.  +.+..     .+++
T Consensus         9 ~~~~~l~VAlvQ~~~~~~~~~~d~~~Nl~~i~~~i~~A~~~~~gadLVVfPE~~l~G~~~~~~~~~~~a~~-----~~g~   83 (333)
T PRK13287          9 KPIEGVLVALIQYPVPVVESRADIDKQIEQIIKTVHKTKAGYPGLDLIVFPEYSTQGLNTKKWTTEEFLCT-----VDGP   83 (333)
T ss_pred             CCCCceEEEEEEcccccCCchhhHHHHHHHHHHHHHHHHhcCCCCcEEEcCCcccccCCccccchhhhccc-----CCCH
Confidence            5667899999999963     78999999999999999864  899999999999999876432  22211     2457


Q ss_pred             HHHHHHHHHHhcCcEEEEeeeeeee-CC-eeEEEEEEEccCCcEEEEEeecccCCCCCCCccccccccCccCCC-CCeEE
Q 022660          149 STAMLSEVARLLKITIVGGSIPERS-GD-RLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGE-TPTIV  225 (294)
Q Consensus       149 ~~~~l~~lA~~~~i~Iv~Gs~~~~~-~~-~~yNsa~vi~~~G~il~~y~K~~L~~~~~P~~~~f~E~~~f~~G~-~~~v~  225 (294)
                      .++.|+++|+++++++++| +.++. ++ ++|||+++++++|+++.+|+|+||+.   |       ...|.+|+ ..++|
T Consensus        84 ~~~~l~~~a~~~~i~~~~g-~~e~~~~~~~~yNsa~vi~~~G~i~~~YrK~h~~~---p-------~~~~~pG~~~~~v~  152 (333)
T PRK13287         84 EVDAFAQACKENKVWGVFS-IMERNPDGNEPYNTAIIIDDQGEIILKYRKLHPWV---P-------VEPWEPGDLGIPVC  152 (333)
T ss_pred             HHHHHHHHHHHcCeEEEEe-eEEEcCCCCceEEEEEEECCCCcEEEEEeecccCC---c-------cccccCCCCCCceE
Confidence            9999999999999999987 44554 33 49999999999999999999999843   2       12478998 58899


Q ss_pred             EeCC-ceEEEeeeccCcCcHHHHHHHHCCCeEEEEcCCCCCCCCHHHHHHHHHHHHHHhCCeeEeecc
Q 022660          226 DTDV-GRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQVLPHSPFV  292 (294)
Q Consensus       226 ~~~~-grigi~ICyD~~fpe~~r~la~~Gadlil~ps~~~~~~~~~~~~~l~~~RAiEn~~~vv~an~  292 (294)
                      +++. .|+|++||||.+|||++|.++++|||+|++|++|+.. ..++|....++||+||++|+++||.
T Consensus       153 ~~~~g~kiG~~ICyD~~fPe~~R~~a~~GAeill~~s~~~~~-~~~~w~~~~~arA~en~~~vv~an~  219 (333)
T PRK13287        153 DGPGGSKLAVCICHDGMFPEMAREAAYKGANVMIRISGYSTQ-VREQWILTNRSNAWQNLMYTASVNL  219 (333)
T ss_pred             ECCCCceEEEEEEecccchHHHHHHHHCCCeEEEECCccCCc-chhHHHHHHHHHHHhCCcEEEEEec
Confidence            9874 5999999999999999999999999999999998654 4578988899999999999999985

>KOG0806 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]

Probab=100.00  E-value=1.7e-36  Score=273.34  Aligned_cols=218  Identities=44%  Similarity=0.643  Sum_probs=202.8

Q ss_pred             CCCCCCCceEEEEEecccc-ccHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCC-CCccchhhhhccCCCCcHHHHH
Q 022660           75 LPTPPVAKFKVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSH-DSFPVYAEDIDAGGDASPSTAM  152 (294)
Q Consensus        75 ~~~~~~~~~rValvQ~~v~-~d~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~-~~~~~~~~~~~~~~~~~~~~~~  152 (294)
                      .+.+...++++|++|.... .+...|+..++..+++|++.|++||||||.++.||.. +.+..+.+.+......++..+.
T Consensus         6 ~~~~~~~~~~~a~vq~~~~l~~~~~Ni~~~~~~i~~aa~~g~~iIv~PE~~~~gy~~~~sf~py~E~i~~~~~~~ps~~~   85 (298)
T KOG0806|consen    6 EHAVILPNATEALVSLEEALLLMNENIDILEKAVKEAAKQGAKIIVFPEDGLYGYNFTESFYPYLEDIPDPGCRDPSRQG   85 (298)
T ss_pred             ccCCcccccceeeeecccchhhhhhhHHHHHHHHHHHHhcCCeEEEChhhccccccccccccchhhhCCCcccCChhHHH
Confidence            3445666789999999987 6999999999999999999999999999999999999 8888899888765456799999


Q ss_pred             HHHHHHhcCcEEEEeeeeeee-CCeeEEEEEEEccCCcEEEEEeecccCCCCCCCccccccccCccCCCCCeEEEeCCce
Q 022660          153 LSEVARLLKITIVGGSIPERS-GDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGR  231 (294)
Q Consensus       153 l~~lA~~~~i~Iv~Gs~~~~~-~~~~yNsa~vi~~~G~il~~y~K~~L~~~~~P~~~~f~E~~~f~~G~~~~v~~~~~gr  231 (294)
                      ++++|+++++++++|++++.. +++.||++.+++++|+.+..|||.|||+.+.|+...|.|...|.+|..+.+++++.||
T Consensus        86 ls~va~~~~~~~i~g~i~~~~~~~k~yns~~~~~~~g~l~~~yrk~hlFD~d~~~~~ry~e~~~~~~g~~f~~~~~~~gk  165 (298)
T KOG0806|consen   86 LSEVAERLSCYIIGGSIEEEALGDKLYNSCADSSCPGDGLAKYRKNHLFDTDGPGVIRYRESHLLSPGDQFTVVDTSYGK  165 (298)
T ss_pred             hHHHHhhceEEEecCcchhhcccccccCcccccCCCcchhheeeeeEEeccCCccceeeeeeeccCCCcCCCcccCCCCc
Confidence            999999999999999888776 7899999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeeeccCcCcHHHHHHHHCCCeEEEEcCCCC---CCCCHHHHHHHHHHHHHHhCCeeEeecc
Q 022660          232 IGIGICYDIRFQELAMIYGARGAHLICYPGAFN---MTTGPLHWELLQRARATDNQVLPHSPFV  292 (294)
Q Consensus       232 igi~ICyD~~fpe~~r~la~~Gadlil~ps~~~---~~~~~~~~~~l~~~RAiEn~~~vv~an~  292 (294)
                      ||+.||||++|+|+++.+++.||++|++|++|+   .+.++.||..+.++||..|..+|+.++.
T Consensus       166 fGi~IC~Di~F~d~A~~~~~~g~~~ivyPtaw~~~~l~~~~~hw~~~~~~~a~~n~~~v~~~s~  229 (298)
T KOG0806|consen  166 FGIFICFDIRFYDPAMILVKDGADLIVYPTAWNNELLSAVPLHWALLMRARANDNAANVHAPSP  229 (298)
T ss_pred             eEEEEEecccccchHHHHHHcCCcEEEecchHhhhcccccchHHHHHHhCCcccceeeeeccCc
Confidence            999999999999999999999999999999999   6789999999999999999999998764

>PRK13981 NAD synthetase; Provisional

Probab=100.00  E-value=3.2e-35  Score=291.53  Aligned_cols=197  Identities=30%  Similarity=0.409  Sum_probs=170.5

Q ss_pred             eEEEEEecccc-ccHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHh--
Q 022660           83 FKVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARL--  159 (294)
Q Consensus        83 ~rValvQ~~v~-~d~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~--  159 (294)
                      ||||++|+++. +|++.|++++.+++++|+++|+|||||||++++||...++.......      ....+.+.+++++  
T Consensus         1 mkIAl~Q~~~~~gd~~~N~~~i~~~i~~A~~~gadLIVfPEl~ltGy~~~d~~~~~~~~------~~~~~~l~~La~~~~   74 (540)
T PRK13981          1 LRIALAQLNPTVGDIAGNAAKILAAAAEAADAGADLLLFPELFLSGYPPEDLLLRPAFL------AACEAALERLAAATA   74 (540)
T ss_pred             CEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECcchhhcCCChhhhhcCHHHH------HHHHHHHHHHHHhcC
Confidence            69999999975 89999999999999999999999999999999999876542222211      1245567777777  


Q ss_pred             cCcEEEEeeeeeeeCCeeEEEEEEEccCCcEEEEEeecccCCCCCCCccccccccCccCCCCCeEEEeCCceEEEeeecc
Q 022660          160 LKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYD  239 (294)
Q Consensus       160 ~~i~Iv~Gs~~~~~~~~~yNsa~vi~~~G~il~~y~K~~L~~~~~P~~~~f~E~~~f~~G~~~~v~~~~~grigi~ICyD  239 (294)
                      +++.+++| .+++.++++||++++++ +|+++++|+|+||++++     .|.|..+|++|+...+|+++++|+|++||||
T Consensus        75 ~~i~ii~G-~~~~~~~~~yNsa~vi~-~G~i~~~y~K~~L~~~~-----~~~E~~~f~~G~~~~~~~~~g~rigv~IC~D  147 (540)
T PRK13981         75 GGPAVLVG-HPWREGGKLYNAAALLD-GGEVLATYRKQDLPNYG-----VFDEKRYFAPGPEPGVVELKGVRIGVPICED  147 (540)
T ss_pred             CCCEEEEe-CcEeeCCcEEEEEEEEE-CCeEEEEEeeeeCCCCC-----CcCccccccCCCCceEEEECCEEEEEEEehh
Confidence            79999999 56777889999999998 89999999999996554     5688899999999999999999999999999


Q ss_pred             CcCcHHHHHHHHCCCeEEEEcCCCCCCCC-HHHHHHHHHHHHHHhCCeeEeecc
Q 022660          240 IRFQELAMIYGARGAHLICYPGAFNMTTG-PLHWELLQRARATDNQVLPHSPFV  292 (294)
Q Consensus       240 ~~fpe~~r~la~~Gadlil~ps~~~~~~~-~~~~~~l~~~RAiEn~~~vv~an~  292 (294)
                      ++||++.+.++.+|||+|++|++++...+ ..+|..+.++||+||++|+|++|.
T Consensus       148 ~~~pe~~r~la~~Gadlil~psa~~~~~~~~~~~~~~~~~rA~En~~~vv~aN~  201 (540)
T PRK13981        148 IWNPEPAETLAEAGAELLLVPNASPYHRGKPDLREAVLRARVRETGLPLVYLNQ  201 (540)
T ss_pred             hcCCcHHHHHHHCCCcEEEEcCCCcccCCcHHHHHHHHHHHHHHhCCeEEEEec
Confidence            99999999999999999999999876544 356778899999999999999996

>TIGR00546 lnt apolipoprotein N-acyltransferase

Probab=100.00  E-value=2.6e-34  Score=274.63  Aligned_cols=198  Identities=21%  Similarity=0.275  Sum_probs=164.2

Q ss_pred             CceEEEEEeccccc-------cHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHH
Q 022660           81 AKFKVGLCQLSVTA-------DKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAML  153 (294)
Q Consensus        81 ~~~rValvQ~~v~~-------d~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l  153 (294)
                      +++||+++|+++++       +.++|++++.++++++.+ ++|||||||+++++|..+.             .+...+.+
T Consensus       158 ~~~~ValvQ~n~~~~~k~~~~~~~~~~~~~~~~~~~a~~-~~dlVv~PE~a~~~~~~~~-------------~~~~~~~l  223 (391)
T TIGR00546       158 PTLNVALVQPNIPQDLKFDSEGLEAILEILTSLTKQAVE-KPDLVVWPETAFPFDLENS-------------PQKLADRL  223 (391)
T ss_pred             CcceEEEEcCCCCcccccChhhHHHHHHHHHHHHhccCC-CCCEEEcCccccccchhhC-------------cHHHHHHH
Confidence            46899999999864       357889999999988876 9999999999999874321             11367889


Q ss_pred             HHHHHhcCcEEEEeeeeeeeCC--eeEEEEEEEccCCcEEEEEeecccCCCC--CCCcccc------cc---ccCccCCC
Q 022660          154 SEVARLLKITIVGGSIPERSGD--RLYNTCCVFGSDGKLIAKHRKIHLFDID--IPGKITF------IE---SKSLTAGE  220 (294)
Q Consensus       154 ~~lA~~~~i~Iv~Gs~~~~~~~--~~yNsa~vi~~~G~il~~y~K~~L~~~~--~P~~~~f------~E---~~~f~~G~  220 (294)
                      +++|+++++.+++|.....+++  ++||++++++++|+++.+|+|+||+||+  +|.+..+      .+   ..+|++|+
T Consensus       224 ~~~a~~~~~~ii~G~~~~~~~~~~~~yNsa~~~~~~G~~~~~Y~K~~LvPfgEyiP~~~~~~~~~~~~~~~~~~~~~~G~  303 (391)
T TIGR00546       224 KLLVLSKGIPILIGAPDAVPGGPYHYYNSAYLVDPGGEVVQRYDKVKLVPFGEYIPLGFLFKWLSKLFFLLSQEDFSRGP  303 (391)
T ss_pred             HHHHHhCCCEEEEecccccCCCCCceeeEEEEECCCCCccccccceeccCCcCCCChHHHHHHHHHHhccCCccCCCCCC
Confidence            9999999999999954332222  7999999999999999999999999886  3533211      01   24789999


Q ss_pred             CCeEEEeCCceEEEeeeccCcCcHHHHHHHHCCCeEEEEcCCCC---CCCCHHHHHHHHHHHHHHhCCeeEeecc
Q 022660          221 TPTIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICYPGAFN---MTTGPLHWELLQRARATDNQVLPHSPFV  292 (294)
Q Consensus       221 ~~~v~~~~~grigi~ICyD~~fpe~~r~la~~Gadlil~ps~~~---~~~~~~~~~~l~~~RAiEn~~~vv~an~  292 (294)
                      ++.+++++++|+|++||||..|||..|.++++|||++++++|..   .+.++.+|..++++||+|||+++|++|.
T Consensus       304 ~~~~~~~~~~~~g~~ICyE~~fp~~~r~~~~~Ga~~lv~~snd~wf~~s~~~~qh~~~~~~RAiEn~~~vvra~n  378 (391)
T TIGR00546       304 GPQVLKLPGGKIAPLICYESIFPDLVRASARQGAELLVNLTNDAWFGDSSGPWQHFALARFRAIENGRPLVRATN  378 (391)
T ss_pred             CCCCCcCCCceeeeeEEeehhchHHHHhhccCCCCEEEEecchhhcCCCCChHHHHHHHHHHHHHhCCcEEEecC
Confidence            99999999999999999999999999999999999999999843   3346788999999999999999999984

This enzyme transfers the acyl group to lipoproteins in the lgt/lsp/lnt system which is found broadly in bacteria but not in archaea. This model represents one component of the "lipoprotein lgt/lsp/lnt system" genome property.

>PRK02628 nadE NAD synthetase; Reviewed

Probab=100.00  E-value=1.5e-33  Score=285.60  Aligned_cols=205  Identities=24%  Similarity=0.262  Sum_probs=171.7

Q ss_pred             CCCCceEEEEEecccc-ccHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHH
Q 022660           78 PPVAKFKVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEV  156 (294)
Q Consensus        78 ~~~~~~rValvQ~~v~-~d~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~l  156 (294)
                      +..+.||||++|+++. +|++.|++++.+++++|+++|||||||||++++||.+.++......++.   ..+.++.|+++
T Consensus         8 ~~~~~mrIAlaQ~~~~~gD~~~Nl~~i~~~i~~A~~~gadLvVfPEL~ltGY~~~dl~~~~~~~~~---~~~~l~~L~~~   84 (679)
T PRK02628          8 YRHGFVRVAAATPKVRVADPAFNAARILALARRAADDGVALAVFPELSLSGYSCDDLFLQDTLLDA---VEDALATLVEA   84 (679)
T ss_pred             hhCCcEEEEEEeCCcccCCHHHHHHHHHHHHHHHHHCCCeEEEcccccccCCCcchhhccHHHHHh---hHHHHHHHHHH
Confidence            3456799999999986 9999999999999999999999999999999999998764322121211   13588899999


Q ss_pred             HHhcCcEEEEeeeeeeeCCeeEEEEEEEccCCcEEEEEeecccCCCCCCCccccccccCccCCCCC--------------
Q 022660          157 ARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETP--------------  222 (294)
Q Consensus       157 A~~~~i~Iv~Gs~~~~~~~~~yNsa~vi~~~G~il~~y~K~~L~~~~~P~~~~f~E~~~f~~G~~~--------------  222 (294)
                      |+++++.|++| ++++.++++||++++++ +|++++.|+|+||+.     +..|.|.++|++|+..              
T Consensus        85 a~~~~i~ivvG-~p~~~~~~lyNsa~vi~-~G~il~~y~K~hLp~-----~~~f~E~r~F~~G~~~~~~~~~~~g~~vpf  157 (679)
T PRK02628         85 SADLDPLLVVG-APLRVRHRLYNCAVVIH-RGRILGVVPKSYLPN-----YREFYEKRWFAPGDGARGETIRLCGQEVPF  157 (679)
T ss_pred             HhhcCEEEEEe-eEEEECCEEEEEEEEEc-CCEEEEEeccccCCC-----CCcccccccccCCCCCCCceEeecCeeecc
Confidence            99999999999 67777889999999997 799999999999954     4478899999999873              


Q ss_pred             ---eEEEe---CCceEEEeeeccCcCcHHH-HHHHHCCCeEEEEcCCCCCCCCHHHHH-HHHHHHHHHhCCeeEeecc
Q 022660          223 ---TIVDT---DVGRIGIGICYDIRFQELA-MIYGARGAHLICYPGAFNMTTGPLHWE-LLQRARATDNQVLPHSPFV  292 (294)
Q Consensus       223 ---~v~~~---~~grigi~ICyD~~fpe~~-r~la~~Gadlil~ps~~~~~~~~~~~~-~l~~~RAiEn~~~vv~an~  292 (294)
                         .+|++   +++|||+.||||+||||.. +.++.+|||+|++|++|+...+..+|. .+.+.||.+++.++|.+|.
T Consensus       158 G~~~vf~~~~~~g~kiGv~IC~DlwfPe~~~~~la~~GAdIil~psAsp~~~gk~~~r~~l~~~~aar~~~~~v~~n~  235 (679)
T PRK02628        158 GTDLLFEAEDLPGFVFGVEICEDLWVPIPPSSYAALAGATVLANLSASNITVGKADYRRLLVASQSARCLAAYVYAAA  235 (679)
T ss_pred             CCceeEEecccCCcEEEEEEeccccccCchhhHHhcCCCEEEEeCCCCCcccCcHHHHHHHHHHHHHHhCcEEEEEec
Confidence               24655   5889999999999999985 889999999999999998877776665 5678899999777766663

>PF00795 CN_hydrolase: Carbon-nitrogen hydrolase The Prosite family is specific to nitrilases The Prosite family is specific to UPF0012; InterPro: IPR003010 This family contains nitrilases that break carbon-nitrogen bonds and appear to be involved in the reduction of organic nitrogen compounds and ammonia production []

Probab=100.00  E-value=5.9e-33  Score=237.94  Aligned_cols=171  Identities=38%  Similarity=0.630  Sum_probs=142.2

Q ss_pred             EEEEEeccc---cccHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCC-----CCccchhhhhccCCCCcHHHHHHHH
Q 022660           84 KVGLCQLSV---TADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSH-----DSFPVYAEDIDAGGDASPSTAMLSE  155 (294)
Q Consensus        84 rValvQ~~v---~~d~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~-----~~~~~~~~~~~~~~~~~~~~~~l~~  155 (294)
                      |||++|+++   ..|.+.|++++.+++++|++.|+|||||||++++||..     ....+.......  ..++.++.+.+
T Consensus         1 ~VA~~Q~~~~~~~~~~~~n~~~i~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~   78 (186)
T PF00795_consen    1 RVALVQLNIDQSWGDPEENLKKILSLIEEAARQGADLVVFPEMALPGYPNPGWCEDDFADLDEFAEP--LDGPYLERLAE   78 (186)
T ss_dssp             EEEEEEB-B-SSTTHHHHHHHHHHHHHHHHHHTTESEEEEETTTTTCS-GGGSGHSSHHHHHHHHBH--STSHHHHHHHH
T ss_pred             CEEEEECCccCccCCHHHHHHHHHHHHHHHHHCCCCEEEcCcchhcccccccccccccchhhhhccc--cccHHHHHHHH
Confidence            799999994   58999999999999999999999999999999999833     222222111110  12579999999


Q ss_pred             HHHhcCcEEEEeeeeeeeCCeeEEEEEEEccCCcEEEEEeecccCCCCCCCccccc-cccCccCC-CCCeEEEeC-----
Q 022660          156 VARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFI-ESKSLTAG-ETPTIVDTD-----  228 (294)
Q Consensus       156 lA~~~~i~Iv~Gs~~~~~~~~~yNsa~vi~~~G~il~~y~K~~L~~~~~P~~~~f~-E~~~f~~G-~~~~v~~~~-----  228 (294)
                      +|+++++++++| +++++++++||++++++++|+++++|+|+||+||+     .+. |..+|.+| ....+++++     
T Consensus        79 ~a~~~~~~i~~G-~~~~~~~~~~N~~~~~~~~g~~~~~y~K~~lvpf~-----~~~P~~~~~~~g~~~~~~~~~~~~~~~  152 (186)
T PF00795_consen   79 LAKENGITIVAG-IPERDDGGLYNSAVVIDPDGEILGRYRKIHLVPFG-----EYIPERRYFSPGGDPFPVFETPVFDFG  152 (186)
T ss_dssp             HHHHHTSEEEEE-EEEEETTEEEEEEEEEETTSEEEEEEEGSSTCSTT-----TTTTHHHHSBEESSESEEEEETETEET
T ss_pred             HHHhcCCccccc-ccccccccccceeEEEEeeecccccccceeeeccc-----cccccceeeeeccceeeeeecceeeec
Confidence            999999999999 78889999999999999999999999999998876     334 66778887 556677765     


Q ss_pred             CceEEEeeeccCcCcHHHHHHHHCCCeEEEEcCC
Q 022660          229 VGRIGIGICYDIRFQELAMIYGARGAHLICYPGA  262 (294)
Q Consensus       229 ~grigi~ICyD~~fpe~~r~la~~Gadlil~ps~  262 (294)
                      ++|||++||||.+||+++|.++++|||+|++|+|
T Consensus       153 g~~ig~~ICyd~~fp~~~~~~~~~ga~il~~~sa  186 (186)
T PF00795_consen  153 GGRIGVLICYDLRFPELVRELAKQGADILINPSA  186 (186)
T ss_dssp             TEEEEEEEGGGGGSHHHHHHHHHTTESEEEEEE-
T ss_pred             cceEEEEEEcccCChHHHHHHHHCCCCEEEeCCC
Confidence            6999999999999999999999999999999985

They all have distinct substrate specificity and include cyanide hydratases, aliphatic amidases, beta-alanine synthase, and a few other proteins with unknown molecular function. Sequence conservation over the entire length, as well as the similarity in the reactions catalyzed by the known enzymes in this family, points to a common catalytic mechanism. They have an invariant cysteine that is part of the catalytic site in nitrilases. Another highly conserved motif includes an invariant glutamic acid that might also be involved in catalysis [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0006807 nitrogen compound metabolic process; PDB: 2E2L_D 2E2K_D 2DYV_A 2DYU_B 3KLC_B 3IW3_A 3KI8_A 3IVZ_A 1EMS_A 2GGK_B ....

>PLN02339 NAD+ synthase (glutamine-hydrolysing)

Probab=100.00  E-value=4.7e-32  Score=274.63  Aligned_cols=202  Identities=17%  Similarity=0.141  Sum_probs=157.4

Q ss_pred             CCceEEEEEecccc-ccHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHH
Q 022660           80 VAKFKVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVAR  158 (294)
Q Consensus        80 ~~~~rValvQ~~v~-~d~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~  158 (294)
                      |+.||||++|+++. +|++.|++++.+.+++|+++|||||||||++++||.+.++....+.++.   ..+.++.|.+.++
T Consensus         1 ~~~mrIAlaQl~~~~gD~~~N~~~I~~~I~~A~~~gAdLvVfPEL~lTGY~~~Dl~~~~~~~~~---~~~~L~~La~~a~   77 (700)
T PLN02339          1 MRLLKVATCNLNQWAMDFDGNLKRIKESIAEAKAAGAVYRVGPELEITGYGCEDHFLELDTVTH---SWECLAEILVGDL   77 (700)
T ss_pred             CceEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCCccCCCChHHHhhChhHHHH---HHHHHHHHHhhcc
Confidence            34799999999987 8999999999999999999999999999999999998654222222211   0134455555556


Q ss_pred             hcCcEEEEeeeeeeeCCeeEEEEEEEccCCcEEEEEeecccCCCCCCCccccccccCccCCCC-----------------
Q 022660          159 LLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGET-----------------  221 (294)
Q Consensus       159 ~~~i~Iv~Gs~~~~~~~~~yNsa~vi~~~G~il~~y~K~~L~~~~~P~~~~f~E~~~f~~G~~-----------------  221 (294)
                      ++++.+++| .++..++++||+++++. +|++++.|+|+||++     +..|.|.++|++|++                 
T Consensus        78 ~~~i~vvvG-~p~~~~~~lYN~a~vi~-~GkIlg~y~K~hLpn-----y~~f~E~r~F~pG~~~~~~~~~~l~~~~~~~~  150 (700)
T PLN02339         78 TDGILCDIG-MPVIHGGVRYNCRVFCL-NRKILLIRPKMWLAN-----DGNYRELRWFTAWKHKKKVEDFQLPEEIAEAT  150 (700)
T ss_pred             cCCeEEEEe-eeEEECCeEEEEEEEEe-CCEEEEEEecccCCC-----CCccccccccccCccCCcceeeccccchhhcc
Confidence            789999999 67777789999999995 899999999999954     347889999999862                 


Q ss_pred             --------CeEEEeCCceEEEeeeccCcCcHHHHH-HHHCCCeEEEEcCCCCCCCC--HHHHHHHHHHHHHHhCCeeEee
Q 022660          222 --------PTIVDTDVGRIGIGICYDIRFQELAMI-YGARGAHLICYPGAFNMTTG--PLHWELLQRARATDNQVLPHSP  290 (294)
Q Consensus       222 --------~~v~~~~~grigi~ICyD~~fpe~~r~-la~~Gadlil~ps~~~~~~~--~~~~~~l~~~RAiEn~~~vv~a  290 (294)
                              ..+|++++.+||+.||||+|||+..+. ++.+|||||++|+++++..+  ..++..+....+..++.| |.+
T Consensus       151 g~~~vpfg~~~~~~~g~~iGv~ICeDlwfPe~p~~~lAl~GAdII~n~sas~~~~gK~~~R~rai~n~sa~~~~~y-vya  229 (700)
T PLN02339        151 SQKSVPFGDGYLQFLDTAVAAETCEELFTPQAPHIDLALNGVEIISNGSGSHHQLRKLNTRLDLIRSATHKCGGVY-LYA  229 (700)
T ss_pred             CCceeccCcceeecCCeEEEEEEecccCCChHHHHHHHHcCCeEEEECCCChhhcCCHHHHHHHHHHHHHHhCCcE-EEE
Confidence                    124455677999999999999999995 99999999999998654433  234455555555555788 567


Q ss_pred             cc
Q 022660          291 FV  292 (294)
Q Consensus       291 n~  292 (294)
                      |.
T Consensus       230 N~  231 (700)
T PLN02339        230 NQ  231 (700)
T ss_pred             cC
Confidence            75

>PRK00302 lnt apolipoprotein N-acyltransferase; Reviewed

Probab=100.00  E-value=2.8e-32  Score=268.61  Aligned_cols=197  Identities=20%  Similarity=0.226  Sum_probs=160.1

Q ss_pred             CceEEEEEeccccc-------cHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHH
Q 022660           81 AKFKVGLCQLSVTA-------DKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAML  153 (294)
Q Consensus        81 ~~~rValvQ~~v~~-------d~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l  153 (294)
                      +++||+++|++++.       +.++|++++.+.+++ +++|+|||||||++++++..++             .++..+.+
T Consensus       218 ~~~~ValvQ~ni~~~~k~~~~~~~~~l~~~~~~~~~-~~~~~dlvV~PE~a~p~~~~~~-------------~~~~~~~l  283 (505)
T PRK00302        218 PALKVALVQGNIPQSLKWDPAGLEATLQKYLDLSRP-ALGPADLIIWPETAIPFLLEDL-------------PQAFLKAL  283 (505)
T ss_pred             CCcEEEEECCCCChhcccCHHHHHHHHHHHHHHHhc-ccCCCCEEEeCCcccccccccc-------------cHHHHHHH
Confidence            46899999999763       456788889888884 4679999999999987653111             12467789


Q ss_pred             HHHHHhcCcEEEEeeeeeee--CC-eeEEEEEEEccCCcEEEEEeecccCCCC--CCCcccc--------ccccCccCCC
Q 022660          154 SEVARLLKITIVGGSIPERS--GD-RLYNTCCVFGSDGKLIAKHRKIHLFDID--IPGKITF--------IESKSLTAGE  220 (294)
Q Consensus       154 ~~lA~~~~i~Iv~Gs~~~~~--~~-~~yNsa~vi~~~G~il~~y~K~~L~~~~--~P~~~~f--------~E~~~f~~G~  220 (294)
                      +++++++++.+++|.....+  ++ ++||+++++++ |+++.+|+|+||+||+  +|.+..+        .+..+|.+|+
T Consensus       284 ~~~a~~~~~~il~G~~~~~~~~~~~~~yNsa~~i~~-g~~~~~Y~K~~LvPfgE~~P~~~~~~~~~~~~~~~~~~~~~G~  362 (505)
T PRK00302        284 DDLAREKGSALITGAPRAENKQGRYDYYNSIYVLGP-YGILNRYDKHHLVPFGEYVPLESLLRPLAPFFNLPMGDFSRGP  362 (505)
T ss_pred             HHHHHhCCCEEEEecccccCCCCCCceeeEEEEECC-CCCcCcccccccCCCcCCCChHHHHHHHHHhcCCCcCCCCCCC
Confidence            99999999999999543222  23 69999999998 7789999999999886  3644221        1223689998


Q ss_pred             -CCeEEEeCCceEEEeeeccCcCcHHHHHHHHCCCeEEEEcCC--C-CCCCCHHHHHHHHHHHHHHhCCeeEeecc
Q 022660          221 -TPTIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICYPGA--F-NMTTGPLHWELLQRARATDNQVLPHSPFV  292 (294)
Q Consensus       221 -~~~v~~~~~grigi~ICyD~~fpe~~r~la~~Gadlil~ps~--~-~~~~~~~~~~~l~~~RAiEn~~~vv~an~  292 (294)
                       +..+++++++|+|++||||..|||..|.++++|+|++++++|  | +.+.++.||..++++||+|||+++|++|-
T Consensus       363 ~~~~v~~~~~~~ig~~ICyE~~fpe~~r~~~~~ga~~lv~~snd~Wf~~~~~~~qh~~~~~~RAiEng~~vvra~n  438 (505)
T PRK00302        363 YVQPPLLAKGLKLAPLICYEIIFPEEVRANVRQGADLLLNISNDAWFGDSIGPYQHFQMARMRALELGRPLIRATN  438 (505)
T ss_pred             CCCCCcccCCceEEEEEeehhcChHHHHhhccCCCCEEEEccchhhcCCCCchHHHHHHHHHHHHHhCCceEEecC
Confidence             788999999999999999999999999999999999999999  3 44456778999999999999999999873

>PRK12291 apolipoprotein N-acyltransferase; Reviewed

Probab=99.97  E-value=1.3e-30  Score=250.59  Aligned_cols=186  Identities=20%  Similarity=0.230  Sum_probs=152.0

Q ss_pred             eEEEEEeccccccH-------HHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHH
Q 022660           83 FKVGLCQLSVTADK-------ERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSE  155 (294)
Q Consensus        83 ~rValvQ~~v~~d~-------~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~  155 (294)
                      .+|+++|++++++.       +.+++++.+.+++|.+.++|+|||||++++++....              .+..+.+++
T Consensus       195 ~~V~lVQ~ni~q~~Kw~~~~~~~~l~~~~~l~~~a~~~~~dLVVwPEta~p~~~~~~--------------~~~~~~l~~  260 (418)
T PRK12291        195 VNIELVNTNIPQDLKWDKENLKSIINENLKEIDKAIDEKKDLIVLPETAFPLALNNS--------------PILLDKLKE  260 (418)
T ss_pred             CEEEEEeCCCCcccccChhhHHHHHHHHHHHHHHHhccCCCEEEeCCcccccchhhC--------------HHHHHHHHH
Confidence            49999999987543       578899999999888899999999999987643211              236667777


Q ss_pred             HHHhcCcEEEEeeeeeeeCCeeEEEEEEEccCCcEEEEEeecccCCCC--CCCcc---------ccccccCccCCCCCeE
Q 022660          156 VARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDID--IPGKI---------TFIESKSLTAGETPTI  224 (294)
Q Consensus       156 lA~~~~i~Iv~Gs~~~~~~~~~yNsa~vi~~~G~il~~y~K~~L~~~~--~P~~~---------~f~E~~~f~~G~~~~v  224 (294)
                      .+  .++.+++|+ ...+++++|||++++++ |+ +..|+|+||+||+  +|-..         .+.|..+|++|++..+
T Consensus       261 ~~--~~~~ii~G~-~~~~~~~~yNS~~vi~~-G~-~~~Y~K~hLVPFGEyiP~~~~l~~~~~~~~~~~~~~f~~G~~~~~  335 (418)
T PRK12291        261 LS--HKITIITGA-LRVEDGHIYNSTYIFSK-GN-VQIADKVILVPFGEEIPLPKFFKKPINKLFFGGASDFSKASKFSD  335 (418)
T ss_pred             hc--cCCcEEEee-eeccCCceEEEEEEECC-CC-cceecccCCCCCcccCccHHHHHhhhHHHhccCcccCCCCCCCcc
Confidence            74  578899994 45556789999999974 77 6899999999886  46322         2346668999999999


Q ss_pred             EEeCCceEEEeeeccCcCcHHHHHHHHCCCeEEEEcCCC---CCCCCHHHHHHHHHHHHHHhCCeeEeec
Q 022660          225 VDTDVGRIGIGICYDIRFQELAMIYGARGAHLICYPGAF---NMTTGPLHWELLQRARATDNQVLPHSPF  291 (294)
Q Consensus       225 ~~~~~grigi~ICyD~~fpe~~r~la~~Gadlil~ps~~---~~~~~~~~~~~l~~~RAiEn~~~vv~an  291 (294)
                      +++++.|+|++||||..|||..|    +|+|++++++|+   +.+.++.+|..+.|+||+|||+++++|+
T Consensus       336 ~~~~g~~ig~lICYE~~Fpel~r----~ga~~Lv~iSNdaWfg~s~~p~~~~~~~r~RAiE~g~pvvrat  401 (418)
T PRK12291        336 FTLDGVKFRNAICYEATSEELYE----GNPKIVIAISNNAWFVPSIEPTLQKLLLKYYARKYGKTIYHSA  401 (418)
T ss_pred             eeeCCeEEEEEEeeeecchHhhc----cCCCEEEEecccccCCCChhHHHHHHHHHHHHHHhCCcEEEEc
Confidence            99999999999999999999988    899999999983   3345677888889999999999999986

>KOG0805 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]

Probab=99.96  E-value=2.3e-28  Score=212.71  Aligned_cols=201  Identities=29%  Similarity=0.432  Sum_probs=174.6

Q ss_pred             CCCCceEEEEEeccc-cccHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCC----------------ccchhhhh
Q 022660           78 PPVAKFKVGLCQLSV-TADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDS----------------FPVYAEDI  140 (294)
Q Consensus        78 ~~~~~~rValvQ~~v-~~d~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~----------------~~~~~~~~  140 (294)
                      +++...||+++|... ..|..+.++++++.+.+|++.|++||||||.++.||+...                +..|.+  
T Consensus        13 d~~s~~~v~ivQ~~t~~~dtpaTL~K~~~~~~Eaa~~Ga~LV~fPEAfiGGYPrg~~Fg~~~G~r~~eGR~ef~kY~a--   90 (337)
T KOG0805|consen   13 DSSSIVRVTIVQASTVYNDTPATLDKAEKYIVEAASKGAELVLFPEAFIGGYPRGFRFGLAVGVRNEEGRDEFRKYHA--   90 (337)
T ss_pred             CcccceEEEEEEcccCCCCCHHHHHHHHHHHHHHhcCCceEEEeehHhccCCCCcceeeEEEeecchhhhHHHHHHHH--
Confidence            577789999999975 5899999999999999999999999999999999998542                111211  


Q ss_pred             ccCCCCcHHHHHHHHHHHhcCcEEEEeeeeeeeCCeeEEEEEEEccCCcEEEEEeecccCCCCCCCccccccccCccCC-
Q 022660          141 DAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAG-  219 (294)
Q Consensus       141 ~~~~~~~~~~~~l~~lA~~~~i~Iv~Gs~~~~~~~~~yNsa~vi~~~G~il~~y~K~~L~~~~~P~~~~f~E~~~f~~G-  219 (294)
                      .+...+++..++|..+|+++++.+++| ..++++..+|.++++|+|+|..+++|||..++.         .|...|..| 
T Consensus        91 ~AIev~gpEv~~l~~la~~~~v~lv~G-~iEreg~TLYCt~~f~~p~g~~lGKHRKlmPTa---------lERciWGqGD  160 (337)
T KOG0805|consen   91 SAIEVPGPEVERLAELAKKNNVYLVMG-AIEREGYTLYCTVLFFSPQGQFLGKHRKLMPTA---------LERCIWGQGD  160 (337)
T ss_pred             HhhcCCChHHHHHHHHhhcCCeEEEEE-EEeccccEEEEEEEEECCCccccccccccccch---------hhheeeccCC
Confidence            112346799999999999999999999 679999999999999999999999999999854         565555554 


Q ss_pred             -CCCeEEEeCCceEEEeeeccCcCcHHHHHHHHCCCeEEEEcCCCCCCCCHHHHHHHHHHHHHHhCCeeEeecccC
Q 022660          220 -ETPTIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQVLPHSPFVFF  294 (294)
Q Consensus       220 -~~~~v~~~~~grigi~ICyD~~fpe~~r~la~~Gadlil~ps~~~~~~~~~~~~~l~~~RAiEn~~~vv~an~~~  294 (294)
                       ...+||+|+.|+||-+||+|.++|-....+..+|.+|.+.|+..    ....|....+.-|+|.||||++|+||.
T Consensus       161 GSTiPV~dT~iGKIG~AICWEN~MPl~R~alY~KgieIycAPT~D----~r~~w~~sM~~IAlEG~cFvlSA~QF~  232 (337)
T KOG0805|consen  161 GSTIPVYDTPIGKIGAAICWENRMPLYRTALYAKGIEIYCAPTAD----GRKEWQSSMLHIALEGGCFVLSACQFC  232 (337)
T ss_pred             CcccceeecccchhceeeecccccHHHHHHHHhcCcEEEeccCCC----CcHHHHHhhhheeecCceEEEEhhhhc
Confidence             55999999999999999999999999999999999999999873    567899999999999999999999984

>COG0815 Lnt Apolipoprotein N-acyltransferase [Cell envelope biogenesis, outer membrane]

Probab=99.94  E-value=1.3e-26  Score=227.51  Aligned_cols=199  Identities=21%  Similarity=0.232  Sum_probs=152.5

Q ss_pred             CCCCceEEEEEeccccccHHHHHHHHH----HHHHHHH-----HCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcH
Q 022660           78 PPVAKFKVGLCQLSVTADKERNIAHAR----RAIEEAA-----EKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASP  148 (294)
Q Consensus        78 ~~~~~~rValvQ~~v~~d~~~n~~~i~----~~i~~A~-----~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~  148 (294)
                      ...+.++|+++|.+++++...+.+...    ..+....     ..++|+|||||.+++-...+.              ..
T Consensus       223 ~~~~~~~V~lvQ~nI~q~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~dlVIwPEtA~p~~~~~~--------------~~  288 (518)
T COG0815         223 VGEPTLTVALVQGNIPQDLKWDADALARLIAGYLEEEFLAAVDKQKPDLVVWPETALPFDLTRH--------------PD  288 (518)
T ss_pred             CCCCceEEEEecCCCcccccCCHHHHHHHHHhhhhccccccccCCCCCEEEccccccccchhhc--------------ch
Confidence            344568999999999855433322222    2222222     378999999999987422111              12


Q ss_pred             HHHHHHHHHHhcCcEEEEeeeeee--eCC--eeEEEEEEEccCCcEEEEEeecccCCCC--CCCccccc--------ccc
Q 022660          149 STAMLSEVARLLKITIVGGSIPER--SGD--RLYNTCCVFGSDGKLIAKHRKIHLFDID--IPGKITFI--------ESK  214 (294)
Q Consensus       149 ~~~~l~~lA~~~~i~Iv~Gs~~~~--~~~--~~yNsa~vi~~~G~il~~y~K~~L~~~~--~P~~~~f~--------E~~  214 (294)
                      ...++.+.+.+.+..+++| ...+  .++  .+|||+++++++|++..+|+|+||+||+  +|.+..+.        ...
T Consensus       289 ~~~~~~~~~~~~~~~~iiG-~~~~~~~~~~~~yyNSv~~~~~~~~~~~~ydK~~LVPFGEYiP~~~~l~~~~~~~~~~~~  367 (518)
T COG0815         289 ALARLAEALQRVGAPLLIG-TDVDGPAPGGGIYYNSVLVLDPGGEGVYRYDKVHLVPFGEYIPFPELLRPLYFFLNLPMS  367 (518)
T ss_pred             HHHHHHHHHHhcCCcEEEe-ccccccCCCCcceeeEEEEecCCCCccccccceeeeCCccccchHHHHHHHhhhhccccc
Confidence            3566788888888888888 3332  133  4899999999999999999999999998  56443221        134


Q ss_pred             CccCCCCCeEEEeCCc-eEEEeeeccCcCcHHHHHHHHCCCeEEEEcCC---CCCCCCHHHHHHHHHHHHHHhCCeeEee
Q 022660          215 SLTAGETPTIVDTDVG-RIGIGICYDIRFQELAMIYGARGAHLICYPGA---FNMTTGPLHWELLQRARATDNQVLPHSP  290 (294)
Q Consensus       215 ~f~~G~~~~v~~~~~g-rigi~ICyD~~fpe~~r~la~~Gadlil~ps~---~~~~~~~~~~~~l~~~RAiEn~~~vv~a  290 (294)
                      .|.+|+...++.+.++ |+++.||||..||+..|...++|||+|+++||   ++.+.++.||..++++||+|+|+++|+|
T Consensus       368 ~f~~G~~~~v~~~~~~~~~~~~ICYE~~F~~~~r~~~~qga~~Lin~SNDAWf~~s~~p~QH~~~a~~RAiE~grp~iRA  447 (518)
T COG0815         368 DFSRGPGPQVLLLAGGPKIAPLICYEAIFPELVRASARQGAELLLNLSNDAWFGGSWGPYQHFQQARVRAVELGRPLVRA  447 (518)
T ss_pred             cccCCCCCcceecCCCceeeceeeehhhchHHHHHhhcCCCcEEEEcccccccCCCcchHHHHHHHHHHHHhcCCcEEEE
Confidence            6788999999999876 69999999999999999999999999999999   4556788999999999999999999998


Q ss_pred             c
Q 022660          291 F  291 (294)
Q Consensus       291 n  291 (294)
                      +
T Consensus       448 t  448 (518)
T COG0815         448 T  448 (518)
T ss_pred             c
Confidence            6

>PRK13825 conjugal transfer protein TraB; Provisional

Probab=99.94  E-value=5.3e-26  Score=216.29  Aligned_cols=187  Identities=16%  Similarity=0.061  Sum_probs=144.4

Q ss_pred             EEEEEeccccccH-----HHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHH
Q 022660           84 KVGLCQLSVTADK-----ERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVAR  158 (294)
Q Consensus        84 rValvQ~~v~~d~-----~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~  158 (294)
                      ++-.+++++.++.     .+..+++.+.+++|.+.|+|+|||||+++++|....                 .+.+.+.++
T Consensus       187 ~w~~v~t~~~~~~~~~~~~~~~~~~~~~v~~A~~~g~dlIVlPEta~~~~~~~~-----------------~~~~~~~l~  249 (388)
T PRK13825        187 GWVGVDTQLGRSLGRDASLERRRELIATVRAAAAAGARVVVLPESALGFWTPTT-----------------ERLWRESLR  249 (388)
T ss_pred             CeEEEECCcccccCchhhHHHHHHHHHHHHhhcccCCCEEEccCcccccccccc-----------------cHHHHHHHH
Confidence            7778888865322     233446677777788889999999999999874311                 112356668


Q ss_pred             hcCcEEEEeeeeeeeCCeeEEEEEEEccCCcEEEEEeecccCCCC--CCCccccccccCccCCC-CCeEEEeCCceEEEe
Q 022660          159 LLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDID--IPGKITFIESKSLTAGE-TPTIVDTDVGRIGIG  235 (294)
Q Consensus       159 ~~~i~Iv~Gs~~~~~~~~~yNsa~vi~~~G~il~~y~K~~L~~~~--~P~~~~f~E~~~f~~G~-~~~v~~~~~grigi~  235 (294)
                      ++++.+++|+ .+++++++||++++++++|.. ..|+|+||++++  +|....+.|..++.+|. +..++++++.|+|++
T Consensus       250 ~~~i~II~G~-~~~~~~~~yNsa~v~~~~G~~-~~Y~K~~LvPfgE~~P~~~~~~e~~~~~~g~~~~~vf~l~g~rvg~l  327 (388)
T PRK13825        250 GSDVTVIAGA-AVVDPGGYDNVLVAISAGGGR-ILYRERMPVPVSMWQPWRPWTGQGGGARAHFFANPVVEIDGRRAAPL  327 (388)
T ss_pred             hCCCeEEEEe-eecCCCCceEEEEEEeCCCCe-eeEeeeeCcCccccCchHHhhccccCCCCCCCCCCceeeCCeEEEEE
Confidence            9999999995 456678899999999998865 499999999886  46554455777787773 446899999999999


Q ss_pred             eeccCcC--cHHHHHHHHCCCeEEEEcCCCC---CCCCHHHHHHHHHHHHHHhCCeeEeec
Q 022660          236 ICYDIRF--QELAMIYGARGAHLICYPGAFN---MTTGPLHWELLQRARATDNQVLPHSPF  291 (294)
Q Consensus       236 ICyD~~f--pe~~r~la~~Gadlil~ps~~~---~~~~~~~~~~l~~~RAiEn~~~vv~an  291 (294)
                      ||||..|  |+..+  ..+|+|+|++++|..   .+..+.++..+.++||+|+|+++|+|+
T Consensus       328 ICYE~~F~~pel~~--~~~GadlLv~~SNd~Wf~~s~~p~~q~~~~~~rA~e~g~plvrA~  386 (388)
T PRK13825        328 ICYEQLLVWPVLQS--MLHSPDVIVAVGNGWWTKGTSIVAIQRASAEAWARLFGVPLVRAF  386 (388)
T ss_pred             EeeeecCcHHHHHh--hccCCCEEEEecCchhcCCCcHHHHHHHHHHHHHHHhCCCEEEec
Confidence            9999988  66533  379999999999933   233467888999999999999999986

>KOG0808 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]

Probab=99.87  E-value=5.6e-21  Score=167.83  Aligned_cols=223  Identities=29%  Similarity=0.426  Sum_probs=179.8

Q ss_pred             CCCCCCccccCCCCCCCCCCCCCCceEEEEEecccc----c----cHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCC
Q 022660           58 MASSSKPEQARAPPALPLPTPPVAKFKVGLCQLSVT----A----DKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYS  129 (294)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~~rValvQ~~v~----~----d~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~  129 (294)
                      +--.|..+..+-.+ .-..+..-+-++|+++|-.+.    .    ..+.--+++...|+.|+..|+.+|+|.|.|..+|.
T Consensus        50 s~~df~lqgy~f~a-~keq~r~pr~vrvgliqn~i~lpttapv~eq~~aih~r~kaiieaaa~agvniiclqeawtmpfa  128 (387)
T KOG0808|consen   50 SKHDFDLQGYSFSA-DKEQMRNPRVVRVGLIQNSIALPTTAPVSEQTRAIHDRLKAIIEAAAVAGVNIICLQEAWTMPFA  128 (387)
T ss_pred             cccCcceeeeeecc-chhhhcCCcEEEEeeecccccCCCCCcHHHHHHHHHHHHHHHHHHHHhcCccEEEeehhhcCchh
Confidence            34455555555433 222333445689999998863    2    23455677788888889999999999999998876


Q ss_pred             CC-----CccchhhhhccCCCCcHHHHHHHHHHHhcCcEEEEeeeeeee---CCeeEEEEEEEccCCcEEEEEeecccCC
Q 022660          130 HD-----SFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERS---GDRLYNTCCVFGSDGKLIAKHRKIHLFD  201 (294)
Q Consensus       130 ~~-----~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~Gs~~~~~---~~~~yNsa~vi~~~G~il~~y~K~~L~~  201 (294)
                      .-     .|-++++.++    .++..+-++++|+++++.|+-. +.+++   ++-++|++++|+-+|.+++++||.|.  
T Consensus       129 fctrerlpwtefaesv~----~gptt~flqklakkhdmvivsp-ilerd~ehgdvlwntavvisn~g~vigk~rknhi--  201 (387)
T KOG0808|consen  129 FCTRERLPWTEFAESVD----TGPTTKFLQKLAKKHDMVIVSP-ILERDIEHGDVLWNTAVVISNNGNVIGKHRKNHI--  201 (387)
T ss_pred             hhccccCchhhhccccc----cCchHHHHHHHHhhCCeEEEeh-hhhcccccCceeeeeeEEEccCCceecccccccC--
Confidence            42     2346666655    3689999999999999988765 77776   46799999999999999999999997  


Q ss_pred             CCCCCccccccccCccCCC-CCeEEEeCCceEEEeeeccCcCcHHHHHHHHCCCeEEEEcCCCCCCCCHHHHHHHHHHHH
Q 022660          202 IDIPGKITFIESKSLTAGE-TPTIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARA  280 (294)
Q Consensus       202 ~~~P~~~~f~E~~~f~~G~-~~~v~~~~~grigi~ICyD~~fpe~~r~la~~Gadlil~ps~~~~~~~~~~~~~l~~~RA  280 (294)
                         |-...|.|+.+|-.|+ +-+||++..|||++-|||--.+|.-|..+...||+||++|+++-...+...|..-++-.|
T Consensus       202 ---prvgdfnestyymeg~lghpvfet~fgriavnicygrhhplnwlmy~lngaeiifnpsatvgalseplwpiearnaa  278 (387)
T KOG0808|consen  202 ---PRVGDFNESTYYMEGDLGHPVFETVFGRIAVNICYGRHHPLNWLMYGLNGAEIIFNPSATVGALSEPLWPIEARNAA  278 (387)
T ss_pred             ---CcccccCcceeEeecCCCCceeeeecceEEEEeeccCCCchhhhhhhccCceEEECCccccccccCccCchhhhhhh
Confidence               6566899999988886 489999999999999999999999999999999999999999765556678988889999


Q ss_pred             HHhCCeeEeec
Q 022660          281 TDNQVLPHSPF  291 (294)
Q Consensus       281 iEn~~~vv~an  291 (294)
                      +.|.+|+++-|
T Consensus       279 ianh~ft~~in  289 (387)
T KOG0808|consen  279 IANHYFTGSIN  289 (387)
T ss_pred             hhhceEEEeec
Confidence            99999998866

>KOG2303 consensus Predicted NAD synthase, contains CN hydrolase domain [Coenzyme transport and metabolism; General function prediction only]

Probab=99.51  E-value=2.9e-14  Score=135.20  Aligned_cols=171  Identities=24%  Similarity=0.279  Sum_probs=139.2

Q ss_pred             CCceEEEEEecccc-ccHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHH
Q 022660           80 VAKFKVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVAR  158 (294)
Q Consensus        80 ~~~~rValvQ~~v~-~d~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~  158 (294)
                      +..++||.|+.|-| -|++.|..++.+.|++|++.||.+-+=||+-++||.+.|...-.+...      ...+.|.++..
T Consensus         2 ~r~vtvAtc~lNqWAlDFegN~~rI~~Si~eAk~~gA~~RlGPELEi~GYgC~DHf~E~Dt~~------HswE~l~~l~~   75 (706)
T KOG2303|consen    2 GRKVTVATCTLNQWALDFEGNMQRILKSIEEAKARGARYRLGPELEITGYGCEDHFLESDTLL------HSWEMLAELVE   75 (706)
T ss_pred             CceEEEEEechhhhhhhccccHHHHHHHHHHHHhcCCeeecCCceeecCCChHHhhccchHHH------HHHHHHHHHHc
Confidence            46789999999998 799999999999999999999999999999999999977432222221      35566677664


Q ss_pred             h---cCcEEEEeeeeeeeCCeeEEEEEEEccCCcEEEEEeecccCCCCCCCccccccccCccCCCCCe------------
Q 022660          159 L---LKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPT------------  223 (294)
Q Consensus       159 ~---~~i~Iv~Gs~~~~~~~~~yNsa~vi~~~G~il~~y~K~~L~~~~~P~~~~f~E~~~f~~G~~~~------------  223 (294)
                      .   .++.+.+| +|....+-.||+.+++ -+|+++....|+-|.+.+     .|.|.+||+++..+.            
T Consensus        76 ~~~~~~il~diG-mPv~hr~~ryNCrv~~-~n~kil~IRpKm~lanDg-----nyRE~RwFt~W~~~~~~e~y~lP~~i~  148 (706)
T KOG2303|consen   76 SPVTQDILCDIG-MPVMHRNVRYNCRVLF-LNRKILLIRPKMWLANDG-----NYRESRWFTPWTRPRVTEEYQLPRMIQ  148 (706)
T ss_pred             CCCCCCeeEecC-Cchhhhhhhhccceee-cCCeEEEEcccceeccCC-----CchhhccccccccccccceeeccHHHH
Confidence            3   35778888 8999999999999988 499999999999996654     788999999886432            


Q ss_pred             -------------EEEeCCceEEEeeeccCcCcHHHH-HHHHCCCeEEEEcCCC
Q 022660          224 -------------IVDTDVGRIGIGICYDIRFQELAM-IYGARGAHLICYPGAF  263 (294)
Q Consensus       224 -------------v~~~~~grigi~ICyD~~fpe~~r-~la~~Gadlil~ps~~  263 (294)
                                   ++++-+--||.-||.|+|.|.... .++..|++|+.+.+..
T Consensus       149 ~~~~Q~tVPfGdavl~~~dt~ig~EiCEEL~tp~sphi~mal~GVei~~NaSGS  202 (706)
T KOG2303|consen  149 KHTGQETVPFGDAVLQTWDTCIGSEICEELWTPRSPHIDMALDGVEIITNASGS  202 (706)
T ss_pred             HHhCCeeecccceeeeecccchhHHHHHHHcCCCCcchhhhhCceEEEecCCcc
Confidence                         444444569999999999988776 6888999999998863

>cd07565 aliphatic_amidase aliphatic amidases (class 2 nitrilases)

Probab=80.93  E-value=12  Score=34.28  Aligned_cols=71  Identities=17%  Similarity=0.149  Sum_probs=43.7

Q ss_pred             HHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHhcCcEEEEeeeeeeeC-CeeEEEEEEE
Q 022660          106 AIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSG-DRLYNTCCVF  184 (294)
Q Consensus       106 ~i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~Gs~~~~~~-~~~yNsa~vi  184 (294)
                      ..+..+.+|||+|+.|-.+....  .               ......++.-|.|++++++.-+....++ ..++-...++
T Consensus       161 ~~r~la~~GAdill~ps~~~~~~--~---------------~~w~~~~~aRA~En~~~vv~aN~~G~~~~~~~~G~S~iv  223 (291)
T cd07565         161 IARECAYKGAELIIRIQGYMYPA--K---------------DQWIITNKANAWCNLMYTASVNLAGFDGVFSYFGESMIV  223 (291)
T ss_pred             HHHHHHHCCCeEEEECCcCCCCc--c---------------hHHHHHHHHHHHhcCcEEEEecccccCCCceeeeeeEEE
Confidence            33444578999999996542210  0               1234456778889999988542221122 2455567788


Q ss_pred             ccCCcEEEE
Q 022660          185 GSDGKLIAK  193 (294)
Q Consensus       185 ~~~G~il~~  193 (294)
                      +|+|+++..
T Consensus       224 dP~G~ila~  232 (291)
T cd07565         224 NFDGRTLGE  232 (291)
T ss_pred             CCCCCEEEe
Confidence            999998743

Aliphatic amidases catalyze the hydrolysis of short-chain aliphatic amides to form ammonia and the corresponding organic acid. This group includes Pseudomonas aeruginosa (Pa) AmiE, the amidase from Geobacillus pallidus RAPc8 (RAPc8 amidase), and Helicobacter pylori (Hp) AmiE and AmiF. PaAimE and HpAmiE hydrolyze various very short aliphatic amides, including propionamide, acetamide and acrylamide. HpAmiF is a formamidase which specifically hydrolyzes formamide. These proteins belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 2. Members of this superfamily generally form homomeric complexes, the basic

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	294
2w1v_A	276	Crystal Structure Of Mouse Nitrilase-2 At 1.4a Reso		8e-57
1f89_A	291	Crystal Structure Of Saccharomyces Cerevisiae Nit3,		5e-49
1ems_A	440	Crystal Structure Of The C. Elegans Nitfhit Protein		3e-25
2vhh_A	405	Crystal Structure Of A Pyrimidine Degrading Enzyme		1e-12
1j31_A	262	Crystal Structure Of Hypothetical Protein Ph0642 Fr		9e-12
3p8k_A	281	Crystal Structure Of A Putative Carbon-Nitrogen Fam		9e-11
3ivz_A	262	Crystal Structure Of Hyperthermophilic Nitrilase Le		1e-09
1erz_A	303	Crystal Structure Of N-Carbamyl-D-Amino Acid Amidoh		5e-07
1fo6_A	304	Crystal Structure Analysis Of N-Carbamoyl-D-Amino-A		2e-06
2ggl_A	304	The Mutant A222c Of Agrobacterium Radiobacter N-Car		2e-06
2ggk_A	304	The Mutant A302c Of Agrobacterium Radiobacter N-Car		2e-06
1uf4_A	303	Crystal Structure Of C171aV236A MUTANT OF N-Carbamy		5e-06
3hkx_A	283	Crystal Structure Analysis Of An Amidase From Neste		5e-05

>pdb|2W1V|A Chain A, Crystal Structure Of Mouse Nitrilase-2 At 1.4a Resolution Length = 276

Iteration: 1
 Score =  217 bits (552), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 107/206 (51%), Positives = 131/206 (63%), Gaps = 5/206 (2%)
Query: 80  VAKFKVGLCQLSVTADKEXXXXXXXXXXXXXXXXXXXXXXXPEIWNSPYSHDSFPVYAED 139
           ++ F++ L QL V++ K                        PE +NSPY    FP YAE 
Sbjct: 1   MSTFRLALIQLQVSSIKSDNLTRACSLVREAAKQGANIVSLPECFNSPYGTTYFPDYAEK 60
Query: 140 IDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHL 199
           I        ST  LSEVA+   I ++GGSIPE    +LYNTC VFG DG L+ KHRKIHL
Sbjct: 61  I-----PGESTQKLSEVAKESSIYLIGGSIPEEDAGKLYNTCSVFGPDGSLLVKHRKIHL 115
Query: 200 FDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICY 259
           FDID+PGKITF ESK+L+ G++ +  DT   ++G+GICYD+RF ELA IY  RG  L+ Y
Sbjct: 116 FDIDVPGKITFQESKTLSPGDSFSTFDTPYCKVGLGICYDMRFAELAQIYAQRGCQLLVY 175
Query: 260 PGAFNMTTGPLHWELLQRARATDNQV 285
           PGAFN+TTGP HWELLQRARA DNQV
Sbjct: 176 PGAFNLTTGPAHWELLQRARAVDNQV 201

>pdb|1F89|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Nit3, A Member Of Branch 10 Of The Nitrilase Superfamily Length = 291

Iteration: 1
 Score =  191 bits (485), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 91/167 (54%), Positives = 115/167 (68%), Gaps = 3/167 (1%)
Query: 121 PEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPER--SGDRLY 178
           PE +NSPYS D F  Y+E I+   + S S   LS +A   KI +VGG+IPE     D++Y
Sbjct: 52  PECFNSPYSTDQFRKYSEVINPK-EPSTSVQFLSNLANKFKIILVGGTIPELDPKTDKIY 110
Query: 179 NTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICY 238
           NT  +F  DGKLI KHRK+HLFD+DIP  I+F ES++L+ GE  T +DT  G+ G+GICY
Sbjct: 111 NTSIIFNEDGKLIDKHRKVHLFDVDIPNGISFHESETLSPGEKSTTIDTKYGKFGVGICY 170
Query: 239 DIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQV 285
           D+RF ELAM+   +GA  + YP AFN  TGPLHW LL R+RA DNQV
Sbjct: 171 DMRFPELAMLSARKGAFAMIYPSAFNTVTGPLHWHLLARSRAVDNQV 217

>pdb|1EMS|A Chain A, Crystal Structure Of The C. Elegans Nitfhit Protein Length = 440

Iteration: 1
 Score =  112 bits (279), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 53/108 (49%), Positives = 73/108 (67%), Gaps = 1/108 (0%)
Query: 178 YNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAG-ETPTIVDTDVGRIGIGI 236
           +NT  +  SDG   A++ K+HLFD++IPGK+  +ES+   AG E    VDT +GR+G+ I
Sbjct: 109 WNTHLIIDSDGVTRAEYNKLHLFDLEIPGKVRLMESEFSKAGTEMIPPVDTPIGRLGLSI 168
Query: 237 CYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQ 284
           CYD+RF EL++    RGA L+ +P AF + TG  HWE L RARA +NQ
Sbjct: 169 CYDVRFPELSLWNRKRGAQLLSFPSAFTLNTGLAHWETLLRARAIENQ 216

>pdb|2VHH|A Chain A, Crystal Structure Of A Pyrimidine Degrading Enzyme From Drosophila Melanogaster Length = 405

Iteration: 1
 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 84/172 (48%), Gaps = 21/172 (12%)
Query: 122 EIWNSPY---SHDSFPV--YAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERS--- 173
           E W  P+   + + FP   +AE+ + G    P+T ML+E+A+   + I+  SI ER    
Sbjct: 120 EAWTMPFAFCTREKFPWCEFAEEAENG----PTTKMLAELAKAYNMVIIH-SILERDMEH 174
Query: 174 GDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPT-IVDTDVGRI 232
           G+ ++NT  V  + G+ + KHRK H     IP    F ES     G T   + +T+ G++
Sbjct: 175 GETIWNTAVVISNSGRYLGKHRKNH-----IPRVGDFNESTYYMEGNTGHPVFETEFGKL 229
Query: 233 GIGICYDIRFQELAMIYGARGAHLICYPGA-FNMTTGPLHWELLQRARATDN 283
            + ICY     +  M++G  GA ++  P A     + PL W +  R  A  N
Sbjct: 230 AVNICYGRHHPQNWMMFGLNGAEIVFNPSATIGRLSEPL-WSIEARNAAIAN 280

>pdb|1J31|A Chain A, Crystal Structure Of Hypothetical Protein Ph0642 From Pyrococcus Horikoshii Length = 262

Iteration: 1
 Score = 67.4 bits (163), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 50/149 (33%), Positives = 75/149 (50%), Gaps = 27/149 (18%)
Query: 121 PEIWNSPYSHDS----FPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDR 176
           PE++++ Y+ +S    F V A+ I  G     +T  L E+AR L + IV G+  E+SG+ 
Sbjct: 41  PELFDTGYNFESREEVFDV-AQQIPEG----ETTTFLXELARELGLYIVAGT-AEKSGNY 94
Query: 177 LYNTCCVFGSDGKLIAKHRKIHLFDIDI----PGKITFIESKSLTAGETPTIVDTDVGRI 232
           LYN+  V G  G  I K+RKIHLF  +     PG + F             + D    ++
Sbjct: 95  LYNSAVVVGPRG-YIGKYRKIHLFYREKVFFEPGDLGF------------KVFDIGFAKV 141
Query: 233 GIGICYDIRFQELAMIYGARGAHLICYPG 261
           G+ IC+D  F E A     +GA +I +P 
Sbjct: 142 GVXICFDWFFPESARTLALKGAEIIAHPA 170

>pdb|3P8K|A Chain A, Crystal Structure Of A Putative Carbon-Nitrogen Family Hydrolase From Staphylococcus Aureus Length = 281

Iteration: 1
 Score = 63.9 bits (154), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 77/166 (46%), Gaps = 15/166 (9%)
Query: 121 PEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNT 180
           PE WN+ Y  +     A++     +   S + +  +A   K+ IV GS+     ++++NT
Sbjct: 60  PEXWNNGYDLEHLNEKADN-----NLGQSFSFIKHLAEKYKVDIVAGSVSNIRNNQIFNT 114
Query: 181 CCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGE--TPTIVDTDVGRIGIGICY 238
                  G+LI ++ K+HL    +P      E + LTAGE        +D   +   ICY
Sbjct: 115 AFSVNKSGQLINEYDKVHL----VP---XLREHEFLTAGEYVAEPFQLSDGTYVTQLICY 167
Query: 239 DIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQ 284
           D+RF EL + Y AR    I +  A    +   HW  L +ARA +N 
Sbjct: 168 DLRFPEL-LRYPARSGAKIAFYVAQWPXSRLQHWHSLLKARAIENN 212

>pdb|3IVZ|A Chain A, Crystal Structure Of Hyperthermophilic Nitrilase Length = 262

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 81/173 (46%), Gaps = 31/173 (17%)
Query: 121 PEIWNSPYSHDS----FPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDR 176
           PE++++ Y+ ++    F + A+ I  G     +T  L +VAR   + IV G+  E+ GD 
Sbjct: 41  PELFDTGYNFETREEVFEI-AQKIPEG----ETTTFLMDVARDTGVYIVAGT-AEKDGDV 94
Query: 177 LYNTCCVFGSDGKLIAKHRKIHLFDIDI----PGKITFIESKSLTAGETPTIVDTDVGRI 232
           LYN+  V G  G  I K+RKIHLF  +     PG + F             + D    ++
Sbjct: 95  LYNSAVVVGPRG-FIGKYRKIHLFYREKFFFEPGDLGF------------RVFDLGFMKV 141
Query: 233 GIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQV 285
           G+ I +D  F E A     +GA +I +P    M   P    +    RA +N+V
Sbjct: 142 GVMIXFDWFFPESARTLALKGADVIAHPANLVMPYAPRAMPI----RALENKV 190

>pdb|1ERZ|A Chain A, Crystal Structure Of N-Carbamyl-D-Amino Acid Amidohydrolase With A Novel Catalytic Framework Common To Amidohydrolases Length = 303

Iteration: 1
 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 16/101 (15%)
Query: 176 RLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITF--------IESKSLTAGETPT-IVD 226
           R +NT  +    GK++ K+RKIHL     PG   +        +E +    G+    + D
Sbjct: 106 RRFNTSILVDKSGKIVGKYRKIHL-----PGHKEYEAYRPFQHLEKRYFEPGDLGFPVYD 160
Query: 227 TDVGRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTT 267
            D  ++G+ IC D R+ E   + G RGA +IC  G +N  T
Sbjct: 161 VDAAKMGMFICNDRRWPEAWRVMGLRGAEIIC--GGYNTPT 199

>pdb|1FO6|A Chain A, Crystal Structure Analysis Of N-Carbamoyl-D-Amino-Acid Amidohydrolase Length = 304

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 16/101 (15%)
Query: 176 RLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITF--------IESKSLTAGETPT-IVD 226
           R +NT  +    GK++ K+RKIHL     PG   +        +E +    G+    + D
Sbjct: 107 RRFNTSILVDKSGKIVGKYRKIHL-----PGHKEYEAYRPFQHLEKRYFEPGDLGFPVYD 161
Query: 227 TDVGRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTT 267
            D  ++G+ IC D R+ E   + G +GA +IC  G +N  T
Sbjct: 162 VDAAKMGMFICNDRRWPETWRVMGLKGAEIIC--GGYNTPT 200

>pdb|2GGL|A Chain A, The Mutant A222c Of Agrobacterium Radiobacter N-Carbamoyl-D-Amino Acid Amidohydrolase Length = 304

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 16/101 (15%)
Query: 176 RLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITF--------IESKSLTAGETPT-IVD 226
           R +NT  +    GK++ K+RKIHL     PG   +        +E +    G+    + D
Sbjct: 107 RRFNTSILVDKSGKIVGKYRKIHL-----PGHKEYEAYRPFQHLEKRYFEPGDLGFPVYD 161
Query: 227 TDVGRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTT 267
            D  ++G+ IC D R+ E   + G +GA +IC  G +N  T
Sbjct: 162 VDAAKMGMFICNDRRWPETWRVMGLKGAEIIC--GGYNTPT 200

>pdb|2GGK|A Chain A, The Mutant A302c Of Agrobacterium Radiobacter N-Carbamoyl-D- Amino-Acid Amidohydrolase Length = 304

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 16/101 (15%)
Query: 176 RLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITF--------IESKSLTAGETPT-IVD 226
           R +NT  +    GK++ K+RKIHL     PG   +        +E +    G+    + D
Sbjct: 107 RRFNTSILVDKSGKIVGKYRKIHL-----PGHKEYEAYRPFQHLEKRYFEPGDLGFPVYD 161
Query: 227 TDVGRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTT 267
            D  ++G+ IC D R+ E   + G +GA +IC  G +N  T
Sbjct: 162 VDAAKMGMFICNDRRWPETWRVMGLKGAEIIC--GGYNTPT 200

>pdb|1UF4|A Chain A, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D- Amino Acid Amidohydrolase Length = 303

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 16/101 (15%)
Query: 176 RLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITF--------IESKSLTAGETPT-IVD 226
           R +NT  +    GK++ K+RKIHL     PG   +        +E +    G+    + D
Sbjct: 106 RRFNTSILVDKSGKIVGKYRKIHL-----PGHKEYEAYRPFQHLEKRYFEPGDLGFPVYD 160
Query: 227 TDVGRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTT 267
            D  ++G+ I  D R+ E   + G RGA +IC  G +N  T
Sbjct: 161 VDAAKMGMFIANDRRWPEAWRVMGLRGAEIIC--GGYNTPT 199

>pdb|3HKX|A Chain A, Crystal Structure Analysis Of An Amidase From Nesterenkonia Sp Length = 283

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 79/174 (45%), Gaps = 30/174 (17%)
Query: 121 PEIWNSPY--SHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIV----GGSIPERSG 174
           PE++   Y  S     V AE +DA      + + L  +AR   I +V    G   PE+ G
Sbjct: 60  PELFGFGYVPSQICAQVSAEQVDA------ARSRLRGIARDRGIALVWSLPGPEGPEQRG 113
Query: 175 DRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGR-IG 233
                T  +    G+++A ++K+ L+  +        E  +   GE P  V +  GR + 
Sbjct: 114 ----ITAELADEHGEVLASYQKVQLYGPE--------EKAAFVPGEQPPPVLSWGGRQLS 161
Query: 234 IGICYDIRFQELAMIYGARGAHLICYPGAF--NMTTGPLHWELLQRARATDNQV 285
           + +CYD+ F E+     ARGA L+  P A   + T+ P    +L  ARA +N +
Sbjct: 162 LLVCYDVEFPEMVRAAAARGAQLVLVPTALAGDETSVP---GILLPARAVENGI 212

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	294
2w1v_A	276	Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A	1e-116
1f89_A	291	32.5 kDa protein YLR351C; nitrilase, dimer, struct	1e-111
1ems_A	440	Nitfhit, NIT-fragIle histidine triad fusion protei	1e-104
3p8k_A	281	Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A	5e-92
2vhh_A	405	CG3027-PA; hydrolase; 2.8A {Drosophila melanogaste	3e-89
3ivz_A	262	Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {	8e-78
3hkx_A	283	Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alp	1e-76
1uf5_A	303	N-carbamyl-D-amino acid amidohydrolase; HET: CDT;	5e-74
2dyu_A	334	Formamidase; AMIF, CEK, catalytic triad, helicobac	7e-70
2e11_A	266	Hydrolase; dimethylarsenic inhibi complex, cacodyl	4e-66
2uxy_A	341	Aliphatic amidase; nitrilase superfamily, hydrolas	2e-61
3ilv_A	634	Glutamine-dependent NAD(+) synthetase; protein str	7e-14
4f4h_A	565	Glutamine dependent NAD+ synthetase; structural ge	2e-13
3n05_A	590	NH(3)-dependent NAD(+) synthetase; ligase, structu	2e-13
3sdb_A	680	Glutamine-dependent NAD(+) synthetase; glutamine-a	8e-13

>2w1v_A Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A {Mus musculus} Length = 276

 Score =  335 bits (861), Expect = e-116
 Identities = 115/205 (56%), Positives = 144/205 (70%), Gaps = 5/205 (2%)

Query: 81  AKFKVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDI 140
           + F++ L QL V++ K  N+  A   + EAA++GA ++ LPE +NSPY    FP YAE I
Sbjct: 2   STFRLALIQLQVSSIKSDNLTRACSLVREAAKQGANIVSLPECFNSPYGTTYFPDYAEKI 61

Query: 141 DAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLF 200
                   ST  LSEVA+   I ++GGSIPE    +LYNTC VFG DG L+ KHRKIHLF
Sbjct: 62  P-----GESTQKLSEVAKESSIYLIGGSIPEEDAGKLYNTCSVFGPDGSLLVKHRKIHLF 116

Query: 201 DIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICYP 260
           DID+PGKITF ESK+L+ G++ +  DT   ++G+GICYD+RF ELA IY  RG  L+ YP
Sbjct: 117 DIDVPGKITFQESKTLSPGDSFSTFDTPYCKVGLGICYDMRFAELAQIYAQRGCQLLVYP 176

Query: 261 GAFNMTTGPLHWELLQRARATDNQV 285
           GAFN+TTGP HWELLQRARA DNQV
Sbjct: 177 GAFNLTTGPAHWELLQRARAVDNQV 201

>1f89_A 32.5 kDa protein YLR351C; nitrilase, dimer, structural genomics, four layer sandwich, PSI, protein structure initiative; 2.40A {Saccharomyces cerevisiae} SCOP: d.160.1.1 Length = 291

 Score =  323 bits (831), Expect = e-111
 Identities = 108/209 (51%), Positives = 137/209 (65%), Gaps = 6/209 (2%)

Query: 82  KFKVGLCQLSVT-ADKERNIAHARRAIEEAAEK--GAKLILLPEIWNSPYSHDSFPVYAE 138
           K KV L QLS +  DK  N+  A   IE A ++    KL++LPE +NSPYS D F  Y+E
Sbjct: 10  KIKVALVQLSGSSPDKMANLQRAATFIERAMKEQPDTKLVVLPECFNSPYSTDQFRKYSE 69

Query: 139 DIDAGGDASPSTAMLSEVARLLKITIVGGSIPERS--GDRLYNTCCVFGSDGKLIAKHRK 196
            I+     S S   LS +A   KI +VGG+IPE     D++YNT  +F  DGKLI KHRK
Sbjct: 70  VINPKEP-STSVQFLSNLANKFKIILVGGTIPELDPKTDKIYNTSIIFNEDGKLIDKHRK 128

Query: 197 IHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQELAMIYGARGAHL 256
           +HLFD+DIP  I+F ES++L+ GE  T +DT  G+ G+GICYD+RF ELAM+   +GA  
Sbjct: 129 VHLFDVDIPNGISFHESETLSPGEKSTTIDTKYGKFGVGICYDMRFPELAMLSARKGAFA 188

Query: 257 ICYPGAFNMTTGPLHWELLQRARATDNQV 285
           + YP AFN  TGPLHW LL R+RA DNQV
Sbjct: 189 MIYPSAFNTVTGPLHWHLLARSRAVDNQV 217

>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM, nitrilase, nucleotide-binding protein, cancer; 2.80A {Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1 Length = 440

 Score =  309 bits (794), Expect = e-104
 Identities = 73/213 (34%), Positives = 112/213 (52%), Gaps = 8/213 (3%)

Query: 77  TPPVAKFKVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVY 136
           T    +  + +CQ++   D E+N   A+  IE A EK  +++ LPE ++    + +  + 
Sbjct: 9   TMATGRHFIAVCQMTSDNDLEKNFQAAKNMIERAGEKKCEMVFLPECFDFIGLNKNEQID 68

Query: 137 AEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGD---RLYNTCCVFGSDGKLIAK 193
                             E+AR   I +  G +  +        +NT  +  SDG   A+
Sbjct: 69  LAMATDC----EYMEKYRELARKHNIWLSLGGLHHKDPSDAAHPWNTHLIIDSDGVTRAE 124

Query: 194 HRKIHLFDIDIPGKITFIESKSLTAG-ETPTIVDTDVGRIGIGICYDIRFQELAMIYGAR 252
           + K+HLFD++IPGK+  +ES+   AG E    VDT +GR+G+ ICYD+RF EL++    R
Sbjct: 125 YNKLHLFDLEIPGKVRLMESEFSKAGTEMIPPVDTPIGRLGLSICYDVRFPELSLWNRKR 184

Query: 253 GAHLICYPGAFNMTTGPLHWELLQRARATDNQV 285
           GA L+ +P AF + TG  HWE L RARA +NQ 
Sbjct: 185 GAQLLSFPSAFTLNTGLAHWETLLRARAIENQC 217

>3p8k_A Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A {Staphylococcus aureus subsp} Length = 281

 Score =  273 bits (700), Expect = 5e-92
 Identities = 59/231 (25%), Positives = 98/231 (42%), Gaps = 21/231 (9%)

Query: 58  MASSSKPEQARAPPALPLPTPPVAKFKVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAK 116
           M SS       +        P  +  KV + QL +   D  +N     +  E+       
Sbjct: 1   MGSSHHHHHHSSGLV-----PRGSHMKVQIYQLPIVFGDSSKNETQITQWFEKNMNAEVD 55

Query: 117 LILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDR 176
           +++LPE+WN+ Y  +     A++         S + +  +A   K+ IV GS+     ++
Sbjct: 56  VVVLPEMWNNGYDLEHLNEKADNNL-----GQSFSFIKHLAEKYKVDIVAGSVSNIRNNQ 110

Query: 177 LYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGE--TPTIVDTDVGRIGI 234
           ++NT       G+LI ++ K+HL  +         E + LTAGE        +D   +  
Sbjct: 111 IFNTAFSVNKSGQLINEYDKVHLVPM-------LREHEFLTAGEYVAEPFQLSDGTYVTQ 163

Query: 235 GICYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQV 285
            ICYD+RF EL       GA +  Y   + M+    HW  L +ARA +N +
Sbjct: 164 LICYDLRFPELLRYPARSGAKIAFYVAQWPMSRLQ-HWHSLLKARAIENNM 213

>2vhh_A CG3027-PA; hydrolase; 2.8A {Drosophila melanogaster} PDB: 2vhi_A Length = 405

 Score =  270 bits (692), Expect = 3e-89
 Identities = 57/251 (22%), Positives = 101/251 (40%), Gaps = 26/251 (10%)

Query: 52  PNPNPIMASSSKPE-QARAPPALPLPTPPVAKFKVGLCQLSVTAD--------KERNIAH 102
           P     +A  +  + +     A    T      +VG  Q S+           +E     
Sbjct: 41  PTSAKDIAEQNGFDIKGYRFTAREEQTRKRRIVRVGAIQNSIVIPTTAPIEKQREAIWNK 100

Query: 103 ARRAIEEAAEKGAKLILLPEIWNSPYS-----HDSFPVYAEDIDAGGDASPSTAMLSEVA 157
            +  I+ AAE G  ++   E W  P++        +  +AE+ + G    P+T ML+E+A
Sbjct: 101 VKTMIKAAAEAGCNIVCTQEAWTMPFAFCTREKFPWCEFAEEAENG----PTTKMLAELA 156

Query: 158 RLLKITIVGGSIPE--RSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKS 215
           +   + I+   +      G+ ++NT  V  + G+ + KHRK H+  +       F ES  
Sbjct: 157 KAYNMVIIHSILERDMEHGETIWNTAVVISNSGRYLGKHRKNHIPRVG-----DFNESTY 211

Query: 216 LTAGETP-TIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWEL 274
              G T   + +T+ G++ + ICY     +  M++G  GA ++  P A         W +
Sbjct: 212 YMEGNTGHPVFETEFGKLAVNICYGRHHPQNWMMFGLNGAEIVFNPSATIGRLSEPLWSI 271

Query: 275 LQRARATDNQV 285
             R  A  N  
Sbjct: 272 EARNAAIANSY 282

>3ivz_A Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {Pyrococcus abyssi} PDB: 3iw3_A 3ki8_A 3klc_A 1j31_A Length = 262

 Score =  236 bits (604), Expect = 8e-78
 Identities = 62/207 (29%), Positives = 103/207 (49%), Gaps = 24/207 (11%)

Query: 84  KVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPY---SHDSFPVYAED 139
           KV   Q++    + ++N + A + I+EA+++GA+L++LPE++++ Y   + +     A+ 
Sbjct: 3   KVAYVQMNPQILEPDKNYSKAEKLIKEASKQGAQLVVLPELFDTGYNFETREEVFEIAQK 62

Query: 140 IDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHL 199
           I  G     +T  L +VAR   + IV G+  E+ GD LYN+  V G  G  I K+RKIHL
Sbjct: 63  IPEG----ETTTFLMDVARDTGVYIVAGT-AEKDGDVLYNSAVVVGPRG-FIGKYRKIHL 116

Query: 200 FDIDIPGKITFIESKSLTAGETP-TIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLIC 258
           F         + E      G+    + D    ++G+ IC+D  F E A     +GA +I 
Sbjct: 117 F---------YREKFFFEPGDLGFRVFDLGFMKVGVMICFDWFFPESARTLALKGADVIA 167

Query: 259 YPGAFNMTTGPLHWELLQRARATDNQV 285
           +P    M     +       RA +N+V
Sbjct: 168 HPANLVMP----YAPRAMPIRALENKV 190

>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric sandwich hydrolase; 1.66A {Nesterenkonia SP} Length = 283

 Score =  234 bits (599), Expect = 1e-76
 Identities = 45/211 (21%), Positives = 85/211 (40%), Gaps = 15/211 (7%)

Query: 77  TPPVAKFKVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPV 135
               +  ++ L Q +    D + N+     A   A+E+GA+L+L PE++   Y       
Sbjct: 15  VIRGSHMRIALMQHTARPLDPQHNLDLIDDAAARASEQGAQLLLTPELFGFGYVPSQICA 74

Query: 136 YAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHR 195
                        + + L  +AR   I +V         ++   T  +    G+++A ++
Sbjct: 75  QVSAEQVD----AARSRLRGIARDRGIALVWSLPGPEGPEQRGITAELADEHGEVLASYQ 130

Query: 196 KIHLFDIDIPGKITFIESKSLTAGET-PTIVDTDVGRIGIGICYDIRFQELAMIYGARGA 254
           K+ L+  +        E  +   GE  P ++     ++ + +CYD+ F E+     ARGA
Sbjct: 131 KVQLYGPE--------EKAAFVPGEQPPPVLSWGGRQLSLLVCYDVEFPEMVRAAAARGA 182

Query: 255 HLICYPGAFNMTTGPLHWELLQRARATDNQV 285
            L+  P A           +L  ARA +N +
Sbjct: 183 QLVLVPTALAGDETS-VPGILLPARAVENGI 212

>1uf5_A N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 1.60A {Agrobacterium SP} SCOP: d.160.1.2 PDB: 1uf4_A* 1uf7_A* 1uf8_A* 1erz_A 1fo6_A 2ggl_A 2ggk_A Length = 303

 Score =  228 bits (582), Expect = 5e-74
 Identities = 50/231 (21%), Positives = 86/231 (37%), Gaps = 32/231 (13%)

Query: 82  KFKVGLCQLSVTA---DKERNIAHARRAIEEAAEKGAKLILLPEIWNSPY--------SH 130
           +  + + Q    A    +E+ +      + +AA +GA  I+ PE+  + +          
Sbjct: 3   QMILAVGQQGPIARAETREQVVVRLLDMLTKAASRGANFIVFPELALTTFFPRWHFTDEA 62

Query: 131 DSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGS---IPERSGDRLYNTCCVFGSD 187
           +    Y  ++       P    L E A  L I    G    + E    R +NT  +    
Sbjct: 63  ELDSFYETEMP-----GPVVRPLFEKAAELGIGFNLGYAELVVEGGVKRRFNTSILVDKS 117

Query: 188 GKLIAKHRKIHLFD---IDIPGKITFIESKSLTAGETP-TIVDTDVGRIGIGICYDIRFQ 243
           GK++ K+RKIHL      +       +E +    G+    + D D  ++G+ I  D R+ 
Sbjct: 118 GKIVGKYRKIHLPGHKEYEAYRPFQHLEKRYFEPGDLGFPVYDVDAAKMGMFIANDRRWP 177

Query: 244 ELAMIYGARGAHLICYPGAFNMTTGPL---------HWELLQRARATDNQV 285
           E   + G RGA +IC          P+         H  L  +A +  N  
Sbjct: 178 EAWRVMGLRGAEIICGGYNTPTHNPPVPQHDHLTSFHHLLSMQAGSYQNGA 228

>2dyu_A Formamidase; AMIF, CEK, catalytic triad, helicobacter pylori aliphatic amidase, hydrolase; 1.75A {Helicobacter pylori} PDB: 2dyv_A 2e2l_A 2e2k_A Length = 334

 Score =  218 bits (558), Expect = 7e-70
 Identities = 45/222 (20%), Positives = 81/222 (36%), Gaps = 29/222 (13%)

Query: 77  TPPVAKFKVGLCQLSV-----TADKERNIAHARRAIE--EAAEKGAKLILLPEIWNSPYS 129
             P+  F V   Q  V       D + NI    R +   +A   G +LI+ PE      +
Sbjct: 8   GKPIEGFLVAAIQFPVPIVNSRKDIDHNIESIIRTLHATKAGYPGVELIIFPEYSTQGLN 67

Query: 130 HDSFPV--YAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGD---RLYNTCCVF 184
              +    +  D+         T + ++  +  K+  V  SI ER+ D     YNT  + 
Sbjct: 68  TAKWLSEEFLLDVP-----GKETELYAKACKEAKVYGVF-SIMERNPDSNKNPYNTAIII 121

Query: 185 GSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVG-RIGIGICYDIRFQ 243
              G++I K+RK+  ++                      + +   G ++ + IC+D    
Sbjct: 122 DPQGEIILKYRKLFPWNP---------IEPWYPGDLGMPVCEGPGGSKLAVCICHDGMIP 172

Query: 244 ELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQV 285
           ELA     +G ++      ++       W L  R+ A  N +
Sbjct: 173 ELAREAAYKGCNVYIRISGYSTQVND-QWILTNRSNAWHNLM 213

>2e11_A Hydrolase; dimethylarsenic inhibi complex, cacodylate; 1.73A {Xanthomonas campestris PV} Length = 266

 Score =  206 bits (527), Expect = 4e-66
 Identities = 53/211 (25%), Positives = 81/211 (38%), Gaps = 24/211 (11%)

Query: 82  KFKVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDI 140
             ++ L Q S    D   N  +    +E  A   + L++LPE + S +S+++    AED+
Sbjct: 3   DLRISLVQGSTRWHDPAGNRDYYGALLEPLAG-QSDLVILPETFTSGFSNEAIDK-AEDM 60

Query: 141 DAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLF 200
           D      P+ A +   A  L   I G S+  R+   ++N       DG  +  + K HLF
Sbjct: 61  D-----GPTVAWIRTQAARLGAAITG-SVQLRTEHGVFNRLLWATPDGA-LQYYDKRHLF 113

Query: 201 DIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQELA------MIYGARGA 254
                      E     AG     V+    RI   +CYD+RF             G    
Sbjct: 114 RFGN-------EHLRYAAGRERLCVEWKGWRINPQVCYDLRFPVFCRNRFDVERPGQLDF 166

Query: 255 HLICYPGAFNMTTGPLHWELLQRARATDNQV 285
            L  +  A   +     W+ L RARA +N  
Sbjct: 167 DLQLFV-ANWPSARAYAWKTLLRARAIENLC 196

>2uxy_A Aliphatic amidase; nitrilase superfamily, hydrolase, acyl transfer, thiol enzymes, hydroxamic acid; HET: C3Y; 1.25A {Pseudomonas aeruginosa} PDB: 2plq_A Length = 341

 Score =  197 bits (502), Expect = 2e-61
 Identities = 38/217 (17%), Positives = 65/217 (29%), Gaps = 28/217 (12%)

Query: 82  KFKVGLCQLSV-----TADKERNIAHARRAIE--EAAEKGAKLILLPEIWNSPYSHDS-- 132
              V +    +      A+   N       I   +    G  L++ PE       +D   
Sbjct: 12  TVGVAVVNYKMPRLHTAAEVLDNARKIAEMIVGMKQGLPGMDLVVFPEYSLQGIMYDPAE 71

Query: 133 FPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSI----PERSGDRLYNTCCVFGSDG 188
               A  I         T + S   R   +  V         E      YNT  +  ++G
Sbjct: 72  MMETAVAIP-----GEETEIFSRACRKANVWGVFSLTGERHEEHPRKAPYNTLVLIDNNG 126

Query: 189 KLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQELAMI 248
           +++ K+RKI  +                  G+T         +I + I  D  + E+   
Sbjct: 127 EIVQKYRKIIPWC---------PIEGWYPGGQTYVSEGPKGMKISLIIXDDGNYPEIWRD 177

Query: 249 YGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQV 285
              +GA LI     + M        ++ +A A  N  
Sbjct: 178 CAMKGAELIVRCQGY-MYPAKDQQVMMAKAMAWANNC 213

>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.79A {Cytophaga hutchinsonii atcc 33406} Length = 634

 Score = 70.7 bits (174), Expect = 7e-14
 Identities = 39/199 (19%), Positives = 63/199 (31%), Gaps = 38/199 (19%)

Query: 82  KFKVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAED- 139
             ++G   ++ T  D E N+ +   AIEEA     +++ LPE+  + Y         ED 
Sbjct: 5   TIRIGGAAVNQTPIDWENNVKNILDAIEEAKNANVEILCLPELCITGYG-------CEDL 57

Query: 140 ------IDAGGDASPSTAMLSEVARLLK--ITIVGGSIPERSGDRLYNTCCVFGSDGKLI 191
                  +       +     E+A         +G   P R     YN  C+   +G + 
Sbjct: 58  FLTDWVAET------AIEYCFEIAASCTDITVSLGL--PMRIAGITYNCVCLV-ENGIVK 108

Query: 192 AKHRKIHL-----------FDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDI 240
               K  L           F        T      +       + +    RIG  IC D 
Sbjct: 109 GFSAKQFLANEGVHYETRWFTAWPRNHTTTFLYNDVKYPFGDVLYNVKDARIGFEICEDA 168

Query: 241 RFQELAMIYGA-RGAHLIC 258
              +   I    +GA L+ 
Sbjct: 169 WRTDRVGIRHYEKGATLVL 187

>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ligase; 1.75A {Burkholderia thailandensis} Length = 565

 Score = 69.4 bits (170), Expect = 2e-13
 Identities = 53/243 (21%), Positives = 89/243 (36%), Gaps = 57/243 (23%)

Query: 82  KFKVGLCQLSVTA-DKERNIAHARRAIEEAAEKGAKLILLPE--IWNSPYSHDSFPVYAE 138
           K ++ L QL+VT  D   N+A    A + A + GA  ++ PE  +   P          E
Sbjct: 6   KTRIALAQLNVTVGDFAGNVAKIVAAAQAAHDAGAHFLIAPELALSGYP---------PE 56

Query: 139 D-------IDAGGDASPSTAMLSEVARLLKIT-----IVG--------------GSIPER 172
           D         A      S A L+E+A  LK       +VG                    
Sbjct: 57  DLLLRPAFYAA------SDAALAELAAQLKPFAGLAVLVGHPLRAPSADGNANRAIERGV 110

Query: 173 SGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRI 232
                YN   +    G++   +RK  L + ++     F E +       P + + +  + 
Sbjct: 111 PPVDTYNAASLI-VGGEVAGTYRKQDLPNTEV-----FDEKRYFATDAAPYVFELNGVKF 164

Query: 233 GIGICYDIRFQELAMIYGARGAHLICYPGA--FNMTTGPLHWELLQRARATDNQVLPHSP 290
           G+ IC D+     A +  A GA ++  P    ++M    +  ++L RAR  +       P
Sbjct: 165 GVVICEDVWHASAAQLAKAAGAQVLIVPNGSPYHMNKDAVRIDIL-RARIRET----GLP 219

Query: 291 FVF 293
            V+
Sbjct: 220 MVY 222

>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis} Length = 590

 Score = 69.3 bits (170), Expect = 2e-13
 Identities = 44/207 (21%), Positives = 68/207 (32%), Gaps = 47/207 (22%)

Query: 82  KFKVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPE--IWNSPYSHDSFPVYAE 138
           + ++ L Q+  T  D   N     R    +AE+GA L+  PE  +   P          E
Sbjct: 4   QLRLALNQIDSTVGDIAGNAEAILRWTRHSAEQGAHLVAFPEMALTGYP---------VE 54

Query: 139 D-------IDAGGDASPSTAMLSEVARLLKIT-------IVG--------GSIPERSGDR 176
           D       ++A      S   L E+A  L          +VG             +    
Sbjct: 55  DLALRSSFVEA------SRTALRELAARLAEEGFGELPVLVGYLDRSESAQPKYGQPAGA 108

Query: 177 LYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGI 236
             N   V    G++     K HL +  +     F E +    G+T  IV      I + I
Sbjct: 109 PRNAAAVL-HRGRVALTFAKHHLPNYGV-----FDEFRYFVPGDTMPIVRLHGVDIALAI 162

Query: 237 CYDIRFQELAMIY-GARGAHLICYPGA 262
           C D+      +    + GA L+    A
Sbjct: 163 CEDLWQDGGRVPAARSAGAGLLLSVNA 189

>3sdb_A Glutamine-dependent NAD(+) synthetase; glutamine-amidotransferase, glutaminase, glutamine-dependent synthetase, ligase; 2.00A {Mycobacterium tuberculosis} PDB: 3seq_A* 3sez_A* 3szg_A* 3dla_A* 3syt_A* Length = 680

 Score = 67.5 bits (165), Expect = 8e-13
 Identities = 41/212 (19%), Positives = 62/212 (29%), Gaps = 43/212 (20%)

Query: 84  KVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAED--- 139
           +V  C    T  D   N A          + GA L + PE+  S YS        ED   
Sbjct: 14  RVAACTHHTTIGDPAANAASVLDMARACHDDGAALAVFPELTLSGYS-------IEDVLL 66

Query: 140 ----IDAGGDASPSTAMLSEVARLLK----ITIVGGSIPERSGDRLYNTCCVFGSDGKLI 191
               +DA          L ++         + +VG   P R   R+YN   V    G ++
Sbjct: 67  QDSLLDA------VEDALLDLVTESADLLPVLVVG--APLRHRHRIYN-TAVVIHRGAVL 117

Query: 192 AKHRKIHL-----FD--------IDIPGKITFIESK-SLTAGETPTIVDTDVGRIGIGIC 237
               K +L     F             G I    +  +          D     + + I 
Sbjct: 118 GVVPKSYLPTYREFYERRQMAPGDGERGTIRIGGADVAFGTDLLFAASDLPGFVLHVEIA 177

Query: 238 YDIRFQELAMIYGA-RGAHLICYPGAFNMTTG 268
            D+          A  GA ++       +T G
Sbjct: 178 EDMFVPMPPSAEAALAGATVLANLSGSPITIG 209

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	294
2w1v_A	276	Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A	100.0
1f89_A	291	32.5 kDa protein YLR351C; nitrilase, dimer, struct	100.0
3p8k_A	281	Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A	100.0
3hkx_A	283	Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alp	100.0
3ivz_A	262	Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {	100.0
2e11_A	266	Hydrolase; dimethylarsenic inhibi complex, cacodyl	100.0
1ems_A	440	Nitfhit, NIT-fragIle histidine triad fusion protei	100.0
2vhh_A	405	CG3027-PA; hydrolase; 2.8A {Drosophila melanogaste	100.0
1uf5_A	303	N-carbamyl-D-amino acid amidohydrolase; HET: CDT;	100.0
2dyu_A	334	Formamidase; AMIF, CEK, catalytic triad, helicobac	100.0
3ilv_A	634	Glutamine-dependent NAD(+) synthetase; protein str	100.0
2uxy_A	341	Aliphatic amidase; nitrilase superfamily, hydrolas	100.0
4f4h_A	565	Glutamine dependent NAD+ synthetase; structural ge	100.0
3n05_A	590	NH(3)-dependent NAD(+) synthetase; ligase, structu	100.0
3sdb_A	680	Glutamine-dependent NAD(+) synthetase; glutamine-a	100.0

>2w1v_A Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A {Mus musculus}

Probab=100.00  E-value=5.9e-45  Score=330.56  Aligned_cols=208  Identities=55%  Similarity=0.940  Sum_probs=188.2

Q ss_pred             CCceEEEEEeccccccHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHh
Q 022660           80 VAKFKVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARL  159 (294)
Q Consensus        80 ~~~~rValvQ~~v~~d~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~  159 (294)
                      |++||||++|+++.+|.+.|++++.+++++|++.|+|||||||++++||...++..+++.+     .++..+.|+++|++
T Consensus         1 M~~~~va~vQ~~~~~d~~~n~~~~~~~i~~a~~~gadlvv~PE~~~~gy~~~~~~~~~~~~-----~~~~~~~l~~~a~~   75 (276)
T 2w1v_A            1 MSTFRLALIQLQVSSIKSDNLTRACSLVREAAKQGANIVSLPECFNSPYGTTYFPDYAEKI-----PGESTQKLSEVAKE   75 (276)
T ss_dssp             CCEEEEEEEECCCCSCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTSCCSTTTHHHHCBCS-----SSHHHHHHHHHHHH
T ss_pred             CCccEEEEEeccccCCHHHHHHHHHHHHHHHHHCCCCEEEcCCCcccCCCHHHHHHHhccC-----CCHHHHHHHHHHHH
Confidence            4679999999998899999999999999999999999999999999999876654444332     25799999999999


Q ss_pred             cCcEEEEeeeeeeeCCeeEEEEEEEccCCcEEEEEeecccCCCCCCCccccccccCccCCCCCeEEEeCCceEEEeeecc
Q 022660          160 LKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYD  239 (294)
Q Consensus       160 ~~i~Iv~Gs~~~~~~~~~yNsa~vi~~~G~il~~y~K~~L~~~~~P~~~~f~E~~~f~~G~~~~v~~~~~grigi~ICyD  239 (294)
                      ++++|++|+.++++++++||++++++++|+++++|+|+|||+.++|....|.|..+|.+|+++.+|+++++|+|++||||
T Consensus        76 ~~~~iv~G~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~~~vP~~e~~~E~~~f~~G~~~~v~~~~~~~ig~~ICyD  155 (276)
T 2w1v_A           76 SSIYLIGGSIPEEDAGKLYNTCSVFGPDGSLLVKHRKIHLFDIDVPGKITFQESKTLSPGDSFSTFDTPYCKVGLGICYD  155 (276)
T ss_dssp             HTSEEECCCEEEEETTEEEEEEEEECTTSCEEEEEECSSCCEEEETTTEEEEGGGTCCCCCCCCEEECSSCEEEECCGGG
T ss_pred             cCeEEEecceeecCCCcEEEEEEEECCCCcEEEEEecccccCcccCccccccccccccCCCCceeEEeCCceEEEEEEec
Confidence            99999999777777889999999999999999999999997765676666788999999999999999999999999999


Q ss_pred             CcCcHHHHHHHHCCCeEEEEcCCCCCCCCHHHHHHHHHHHHHHhCCeeEeecc
Q 022660          240 IRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQVLPHSPFV  292 (294)
Q Consensus       240 ~~fpe~~r~la~~Gadlil~ps~~~~~~~~~~~~~l~~~RAiEn~~~vv~an~  292 (294)
                      ++|||++|.++.+|||+|++|++|+...+..+|..+.++||+||++|||++|.
T Consensus       156 ~~fpe~~r~~~~~ga~ll~~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~~n~  208 (276)
T 2w1v_A          156 MRFAELAQIYAQRGCQLLVYPGAFNLTTGPAHWELLQRARAVDNQVYVATASP  208 (276)
T ss_dssp             GGCHHHHHHHHHTTEEEEEEECCCCTTHHHHHHHHHHHHHHHHHTCEEEEECC
T ss_pred             cccHHHHHHHHHcCCCEEEECCcCCCcCCHHHHHHHHHHHHHHcCcEEEEecc
Confidence            99999999999999999999999887666789999999999999999999995

>1f89_A 32.5 kDa protein YLR351C; nitrilase, dimer, structural genomics, four layer sandwich, PSI, protein structure initiative; 2.40A {Saccharomyces cerevisiae} SCOP: d.160.1.1

Probab=100.00  E-value=1.5e-44  Score=330.17  Aligned_cols=211  Identities=51%  Similarity=0.838  Sum_probs=178.9

Q ss_pred             CCCceEEEEEecc-ccccHHHHHHHHHHHHHHH--HHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCC--cHHHHHH
Q 022660           79 PVAKFKVGLCQLS-VTADKERNIAHARRAIEEA--AEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDA--SPSTAML  153 (294)
Q Consensus        79 ~~~~~rValvQ~~-v~~d~~~n~~~i~~~i~~A--~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~--~~~~~~l  153 (294)
                      +.++||||++|++ ..+|++.|++++.+++++|  .+.|+|||||||++++||...++..+++.+.   ..  ++..+.|
T Consensus         7 m~~~~~va~vQ~~~~~~d~~~n~~~~~~~i~~a~~~~~gadlvv~PE~~~~g~~~~~~~~~~~~~~---~~~~~~~~~~l   83 (291)
T 1f89_A            7 LSQKIKVALVQLSGSSPDKMANLQRAATFIERAMKEQPDTKLVVLPECFNSPYSTDQFRKYSEVIN---PKEPSTSVQFL   83 (291)
T ss_dssp             BSSCEEEEEEECCCCCSCHHHHHHHHHHHHHHHHHHCTTEEEEECCTTTTSCSCHHHHHHHTTBCC---SSSCCHHHHHH
T ss_pred             ccccceEEEEeccCCcCCHHHHHHHHHHHHHHHhhccCCCeEEEcCCCcccCCChHHHHHHhhhhc---cCCCChHHHHH
Confidence            4457999999999 5699999999999999999  8899999999999999986543333333220   12  5799999


Q ss_pred             HHHHHhcCcEEEEeeeeeeeC--CeeEEEEEEEccCCcEEEEEeecccCCCCCCCccccccccCccCCCCCeEEEeCCce
Q 022660          154 SEVARLLKITIVGGSIPERSG--DRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGR  231 (294)
Q Consensus       154 ~~lA~~~~i~Iv~Gs~~~~~~--~~~yNsa~vi~~~G~il~~y~K~~L~~~~~P~~~~f~E~~~f~~G~~~~v~~~~~gr  231 (294)
                      +++|++++++|++|+++++++  +++||++++++++|+++++|+|+|||++++|.+..|.|..+|.+|+++.+|+++++|
T Consensus        84 ~~~a~~~~~~iv~G~~~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hLf~e~~P~~~~~~E~~~f~~G~~~~v~~~~~~~  163 (291)
T 1f89_A           84 SNLANKFKIILVGGTIPELDPKTDKIYNTSIIFNEDGKLIDKHRKVHLFDVDIPNGISFHESETLSPGEKSTTIDTKYGK  163 (291)
T ss_dssp             HHHHHHSSCEEECCCEEEECTTTCCEEEEEEEECTTSCEEEEEECCCCC----------HHHHSCCCCCCCEEEEETTEE
T ss_pred             HHHHHHcCcEEEeceeecccCCCCceEEEEEEECCCCcEEeEEeeeccCCCccCccccccccccccCCCCCceEecCCee
Confidence            999999999999997677765  789999999999999999999999998778877777888999999999999999999


Q ss_pred             EEEeeeccCcCcHHHHHHHHCCCeEEEEcCCCCCCCCHHHHHHHHHHHHHHhCCeeEeecc
Q 022660          232 IGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQVLPHSPFV  292 (294)
Q Consensus       232 igi~ICyD~~fpe~~r~la~~Gadlil~ps~~~~~~~~~~~~~l~~~RAiEn~~~vv~an~  292 (294)
                      +|++||||++|||++|.++.+|||+|++|++|+...++.+|..+.++||+||++|||++|.
T Consensus       164 ig~~ICyD~~fpe~~r~l~~~Ga~ll~~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~~n~  224 (291)
T 1f89_A          164 FGVGICYDMRFPELAMLSARKGAFAMIYPSAFNTVTGPLHWHLLARSRAVDNQVYVMLCSP  224 (291)
T ss_dssp             EEECCGGGGGCHHHHHHHHHTTEEEEEEECCCBTTHHHHHHHHHHHHHHHHHTSEEEEECC
T ss_pred             EEEEEecccCchHHHHHHHhhCCCEEEECCcCCCCCcHHHHHHHHHHHHHHcCCEEEEecC
Confidence            9999999999999999999999999999999887667889999999999999999999985

>3p8k_A Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A {Staphylococcus aureus subsp}

Probab=100.00  E-value=1.1e-43  Score=323.64  Aligned_cols=206  Identities=27%  Similarity=0.440  Sum_probs=184.3

Q ss_pred             CCCCCCCCceEEEEEecccc-ccHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHH
Q 022660           74 PLPTPPVAKFKVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAM  152 (294)
Q Consensus        74 ~~~~~~~~~~rValvQ~~v~-~d~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~  152 (294)
                      +.+.+..++||||++|+++. +|.+.|++++++++++|++.|+|||||||++++||...++...++.+     +++..+.
T Consensus        12 ~~~~~~~~~~kva~~Q~~~~~~d~~~Nl~~~~~~i~~A~~~gadlvvfPE~~l~gy~~~~~~~~a~~~-----~~~~~~~   86 (281)
T 3p8k_A           12 SGLVPRGSHMKVQIYQLPIVFGDSSKNETQITQWFEKNMNAEVDVVVLPEMWNNGYDLEHLNEKADNN-----LGQSFSF   86 (281)
T ss_dssp             --CCCTTSEEEEEEEECCCCTTCHHHHHHHHHHHHHHHCCTTCCEEECCSSTTTTTCGGGHHHHSEET-----THHHHHH
T ss_pred             ccccccCCCcEEEEEeccCCcCCHHHHHHHHHHHHHHHHhCCCcEEEcCCCccCCCChhHHHHhhhcc-----CcHHHHH
Confidence            34457788999999999986 89999999999999999999999999999999999876544444433     2579999


Q ss_pred             HHHHHHhcCcEEEEeeeeeeeCCeeEEEEEEEccCCcEEEEEeecccCCCCCCCccccccccCccCCCCC-eEEEe-CCc
Q 022660          153 LSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETP-TIVDT-DVG  230 (294)
Q Consensus       153 l~~lA~~~~i~Iv~Gs~~~~~~~~~yNsa~vi~~~G~il~~y~K~~L~~~~~P~~~~f~E~~~f~~G~~~-~v~~~-~~g  230 (294)
                      |+++|++++++|++|+..+++++++||++++|+++|+++++|+|+||++       .|.|..+|++|++. .+|++ +++
T Consensus        87 l~~la~~~~i~iv~G~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~-------~f~E~~~f~~G~~~~~v~~~~~~~  159 (281)
T 3p8k_A           87 IKHLAEKYKVDIVAGSVSNIRNNQIFNTAFSVNKSGQLINEYDKVHLVP-------MLREHEFLTAGEYVAEPFQLSDGT  159 (281)
T ss_dssp             HHHHHHHHTCEEEEEEEEEEETTEEEEEEEEECTTSCEEEEEECSCCCT-------TTTGGGTCCCCSSCCCCEECTTCC
T ss_pred             HHHHHhhCCeEEEEeeeEEccCCcEEEEEEEEcCCCeEEEEEeeEECCC-------CcCccccCcCCCCCceeEEeCCCc
Confidence            9999999999999997667788999999999999999999999999986       35788999999998 99999 999


Q ss_pred             eEEEeeeccCcCcHHHHHHHHCCCeEEEEcCCCCCCCCHHHHHHHHHHHHHHhCCeeEeecc
Q 022660          231 RIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQVLPHSPFV  292 (294)
Q Consensus       231 rigi~ICyD~~fpe~~r~la~~Gadlil~ps~~~~~~~~~~~~~l~~~RAiEn~~~vv~an~  292 (294)
                      |+|++||||++|||++|.++.+|||+|++|++|+.. ...+|..+.++||+||++|||++|.
T Consensus       160 ~ig~~IC~D~~fpe~~r~~~~~Gadli~~psa~~~~-~~~~~~~~~~arA~en~~~vv~~n~  220 (281)
T 3p8k_A          160 YVTQLICYDLRFPELLRYPARSGAKIAFYVAQWPMS-RLQHWHSLLKARAIENNMFVIGTNS  220 (281)
T ss_dssp             EEEEEEGGGGGCTHHHHHHHHTTCCEEEEEECCBGG-GHHHHHHHHHHHHHHHTSEEEEEEC
T ss_pred             EEEEEEecCCCCcHHHHHHHHCCCCEEEECCCCCCc-cHHHHHHHHHHHHHHcCCEEEEEcc
Confidence            999999999999999999999999999999998754 3678999999999999999999996

>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric sandwich hydrolase; 1.66A {Nesterenkonia SP}

Probab=100.00  E-value=1.6e-42  Score=316.22  Aligned_cols=202  Identities=23%  Similarity=0.338  Sum_probs=178.0

Q ss_pred             CCCCCCceEEEEEecccc-ccHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCcc-chhhhhccCCCCcHHHHHH
Q 022660           76 PTPPVAKFKVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFP-VYAEDIDAGGDASPSTAML  153 (294)
Q Consensus        76 ~~~~~~~~rValvQ~~v~-~d~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~-~~~~~~~~~~~~~~~~~~l  153 (294)
                      +....++||||++|+++. +|.+.|++++.+++++|++.|+|||||||++++||...++. .+++..+     ++.++.|
T Consensus        14 ~~~~~~~~rva~~Q~~~~~~d~~~N~~~~~~~i~~A~~~gadlvvfPE~~l~gy~~~d~~~~~a~~~~-----~~~~~~l   88 (283)
T 3hkx_A           14 LVIRGSHMRIALMQHTARPLDPQHNLDLIDDAAARASEQGAQLLLTPELFGFGYVPSQICAQVSAEQV-----DAARSRL   88 (283)
T ss_dssp             SCCTTEEEEEEEEEBCCCTTCHHHHHHHHHHHHHHHHHTTCSEEECCTTGGGCSCHHHHHHHCCHHHH-----HHHHHHH
T ss_pred             ceecCCccEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCCcccCCChHHHHHHhccccC-----CHHHHHH
Confidence            445667899999999987 69999999999999999999999999999999999865432 3333322     4689999


Q ss_pred             HHHHHhcCcEEEEeeeeeeeC-CeeEEEEEEEccCCcEEEEEeecccCCCCCCCccccccccCccCCCC-CeEEEeCCce
Q 022660          154 SEVARLLKITIVGGSIPERSG-DRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGET-PTIVDTDVGR  231 (294)
Q Consensus       154 ~~lA~~~~i~Iv~Gs~~~~~~-~~~yNsa~vi~~~G~il~~y~K~~L~~~~~P~~~~f~E~~~f~~G~~-~~v~~~~~gr  231 (294)
                      +++|++++++|++| .+++++ +++||++++|+++|+++++|+|+||+++        .|..+|++|++ ..+|+++++|
T Consensus        89 ~~~a~~~~i~iv~G-~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~~--------~E~~~f~~G~~~~~v~~~~~~~  159 (283)
T 3hkx_A           89 RGIARDRGIALVWS-LPGPEGPEQRGITAELADEHGEVLASYQKVQLYGP--------EEKAAFVPGEQPPPVLSWGGRQ  159 (283)
T ss_dssp             HHHHHHTTSEEEEC-CBCSSCTTTCCBEEEEECTTSCEEEEEECSSCCHH--------HHHHHSCCCCSCCCEEEETTEE
T ss_pred             HHHHHHhCCEEEEE-EEEEcCCCCEEEEEEEEcCCCcEEEEEccccCCCc--------CchhhccCCCCCceEEEECCEE
Confidence            99999999999999 567665 7899999999999999999999999652        47788999998 6899999999


Q ss_pred             EEEeeeccCcCcHHHHHHHHCCCeEEEEcCCCCCCCCHHHHHHHHHHHHHHhCCeeEeecc
Q 022660          232 IGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQVLPHSPFV  292 (294)
Q Consensus       232 igi~ICyD~~fpe~~r~la~~Gadlil~ps~~~~~~~~~~~~~l~~~RAiEn~~~vv~an~  292 (294)
                      ||++||||++|||++|.++.+|||+|++|++|+...+ .+|..+.++||+||++|||++|.
T Consensus       160 ig~~IC~D~~fpe~~r~l~~~Ga~li~~ps~~~~~~~-~~~~~~~~~rA~en~~~vv~~n~  219 (283)
T 3hkx_A          160 LSLLVCYDVEFPEMVRAAAARGAQLVLVPTALAGDET-SVPGILLPARAVENGITLAYANH  219 (283)
T ss_dssp             EEECCGGGGGSHHHHHHHHHTTCSEEEEECCCBSCCT-HHHHTHHHHHHHHHTCEEEEECB
T ss_pred             EEEEEecCcCCHHHHHHHHHCCCCEEEECCCCCCccc-HHHHHHHHHHHHHhCCEEEEEcc
Confidence            9999999999999999999999999999999876544 78999999999999999999985

>3ivz_A Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {Pyrococcus abyssi} SCOP: d.160.1.2 PDB: 3iw3_A 3ki8_A 3klc_A 1j31_A

Probab=100.00  E-value=2.1e-41  Score=305.19  Aligned_cols=194  Identities=31%  Similarity=0.477  Sum_probs=173.6

Q ss_pred             eEEEEEecccc-ccHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHhcC
Q 022660           83 FKVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLK  161 (294)
Q Consensus        83 ~rValvQ~~v~-~d~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~  161 (294)
                      ||||++|+++. +|.+.|++++.+++++|++.|+|||||||++++||...+.....+... ...+++.++.|+++|++++
T Consensus         2 ~rva~~Q~~~~~~d~~~N~~~~~~~i~~A~~~gadlvvfPE~~~~gy~~~~~~~~~~~a~-~~~~~~~~~~l~~~a~~~~   80 (262)
T 3ivz_A            2 VKVAYVQMNPQILEPDKNYSKAEKLIKEASKQGAQLVVLPELFDTGYNFETREEVFEIAQ-KIPEGETTTFLMDVARDTG   80 (262)
T ss_dssp             CEEEEEECCCCTTCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTTCSCCSCHHHHHHHCB-CTTTSHHHHHHHHHHHHHC
T ss_pred             eEEEEEeccCCCCCHHHHHHHHHHHHHHHHHCCCCEEEeCCCcccCCCCCCHHHHHHhcC-ccCCCHHHHHHHHHHHHcC
Confidence            79999999987 999999999999999999999999999999999998765332211111 1124589999999999999


Q ss_pred             cEEEEeeeeeeeCCeeEEEEEEEccCCcEEEEEeecccCCCCCCCccccccccCccCCC-CCeEEEeCCceEEEeeeccC
Q 022660          162 ITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGE-TPTIVDTDVGRIGIGICYDI  240 (294)
Q Consensus       162 i~Iv~Gs~~~~~~~~~yNsa~vi~~~G~il~~y~K~~L~~~~~P~~~~f~E~~~f~~G~-~~~v~~~~~grigi~ICyD~  240 (294)
                      ++|++| +++++++++||++++++++| ++..|+|+||+         +.|..+|++|+ ++.+|+++++|+|++||||+
T Consensus        81 ~~iv~G-~~~~~~~~~yNs~~~i~~~G-~~~~y~K~hL~---------~~E~~~f~~G~~~~~v~~~~~~~ig~~IC~D~  149 (262)
T 3ivz_A           81 VYIVAG-TAEKDGDVLYNSAVVVGPRG-FIGKYRKIHLF---------YREKFFFEPGDLGFRVFDLGFMKVGVMICFDW  149 (262)
T ss_dssp             CEEEEE-EEEEETTEEEEEEEEEETTE-EEEEEECSSCC---------GGGGGTCBCCCSCSCEEECSSCEEEECCGGGG
T ss_pred             cEEEEe-EEEeeCCcEEEEEEEEcCCe-eEEEEeecccC---------CchhceEeCCCCCceEEEECCEEEEEEEecCC
Confidence            999999 78888999999999999999 99999999993         47889999999 89999999999999999999


Q ss_pred             cCcHHHHHHHHCCCeEEEEcCCCCCCCCHHHHHHHHHHHHHHhCCeeEeecc
Q 022660          241 RFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQVLPHSPFV  292 (294)
Q Consensus       241 ~fpe~~r~la~~Gadlil~ps~~~~~~~~~~~~~l~~~RAiEn~~~vv~an~  292 (294)
                      +|||++|.++.+|||+|++|++|+..    +|..+.++||+||++||+++|.
T Consensus       150 ~fpe~~r~~~~~ga~li~~ps~~~~~----~~~~~~~~rA~en~~~vv~~n~  197 (262)
T 3ivz_A          150 FFPESARTLALKGADVIAHPANLVMP----YAPRAMPIRALENKVYTVTADR  197 (262)
T ss_dssp             GSHHHHHHHHHTTCSEEEEEECCCSS----CHHHHHHHHHHHHTCEEEEEEC
T ss_pred             CchHHHHHHHHCCCCEEEEcCCCCch----HHHHHHHHHHHhcCcEEEEECC
Confidence            99999999999999999999998652    7999999999999999999995

>2e11_A Hydrolase; dimethylarsenic inhibi complex, cacodylate; 1.73A {Xanthomonas campestris PV}

Probab=100.00  E-value=3e-41  Score=304.46  Aligned_cols=196  Identities=25%  Similarity=0.310  Sum_probs=171.4

Q ss_pred             CCceEEEEEecccc-ccHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHH
Q 022660           80 VAKFKVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVAR  158 (294)
Q Consensus        80 ~~~~rValvQ~~v~-~d~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~  158 (294)
                      |++||||++|+++. +|.+.|++++.+++++| +.|+|||||||++++||.... ...++..     .++..+.|+++|+
T Consensus         1 M~~~kva~~Q~~~~~~d~~~n~~~~~~~i~~a-~~gadlvv~PE~~~~gy~~~~-~~~a~~~-----~~~~~~~l~~~a~   73 (266)
T 2e11_A            1 MHDLRISLVQGSTRWHDPAGNRDYYGALLEPL-AGQSDLVILPETFTSGFSNEA-IDKAEDM-----DGPTVAWIRTQAA   73 (266)
T ss_dssp             CCCEEEEEEECCCCTTCHHHHHHHHHHHHGGG-TTTCSEEECCTTTTTCSCSGG-GGGCEET-----TSHHHHHHHHHHH
T ss_pred             CCccEEEEEeCCCCcCCHHHHHHHHHHHHHHh-cCCCCEEECCCCccccCChhH-HHhhccC-----CCHHHHHHHHHHH
Confidence            45699999999986 89999999999999999 899999999999999995322 2222222     3579999999999


Q ss_pred             hcCcEEEEeeeeeeeCCeeEEEEEEEccCCcEEEEEeecccCCCCCCCccccccccCccCCCCCeEEEeCCceEEEeeec
Q 022660          159 LLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICY  238 (294)
Q Consensus       159 ~~~i~Iv~Gs~~~~~~~~~yNsa~vi~~~G~il~~y~K~~L~~~~~P~~~~f~E~~~f~~G~~~~v~~~~~grigi~ICy  238 (294)
                      +++++|++| .++++++++||++++++++|+++ +|+|+||+++       +.|..+|.+|+++.+|+++++|+|++|||
T Consensus        74 ~~~~~iv~G-~~~~~~~~~yNs~~~i~~~G~i~-~y~K~hL~~~-------~~E~~~f~~G~~~~v~~~~~~~ig~~ICy  144 (266)
T 2e11_A           74 RLGAAITGS-VQLRTEHGVFNRLLWATPDGALQ-YYDKRHLFRF-------GNEHLRYAAGRERLCVEWKGWRINPQVCY  144 (266)
T ss_dssp             HHTSEEEEE-EEEEETTEEEEEEEEECTTSCEE-EEECSSCCGG-------GTTTTTSBCCCSCCCEEETTEEEEEEEGG
T ss_pred             HhCCEEEEe-eeEccCCcEEEEEEEECCCCCEE-EEeeeccCCC-------cChhhhccCCCCceEEEECCEEEEEEEEe
Confidence            999999999 56677889999999999999999 9999999874       36888999999999999999999999999


Q ss_pred             cCcCcHHHHHHH---HC---CCeEEEEcCCCCCCCCHHHHHHHHHHHHHHhCCeeEeecc
Q 022660          239 DIRFQELAMIYG---AR---GAHLICYPGAFNMTTGPLHWELLQRARATDNQVLPHSPFV  292 (294)
Q Consensus       239 D~~fpe~~r~la---~~---Gadlil~ps~~~~~~~~~~~~~l~~~RAiEn~~~vv~an~  292 (294)
                      |++|||+.|.++   ++   |||+|++|++|+.. ...+|..+.++||+||++|||++|.
T Consensus       145 D~~fpe~~r~~~~~~~~~~~ga~~i~~~s~w~~~-~~~~~~~~~~~rA~en~~~vv~an~  203 (266)
T 2e11_A          145 DLRFPVFCRNRFDVERPGQLDFDLQLFVANWPSA-RAYAWKTLLRARAIENLCFVAAVNR  203 (266)
T ss_dssp             GGGCTTTTCCCBSSSSTTSBSCSEEEEEECCCGG-GHHHHHHHHHHHHHHTTSEEEEEEC
T ss_pred             ccCCHHHHHHHHhhhhccCCCCcEEEEeCCCCCC-chHHHHHHHHHHHHhcCcEEEEEcC
Confidence            999999999864   54   99999999998654 4568999999999999999999985

>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM, nitrilase, nucleotide-binding protein, cancer; 2.80A {Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1

Probab=100.00  E-value=2.5e-41  Score=325.90  Aligned_cols=210  Identities=35%  Similarity=0.562  Sum_probs=184.5

Q ss_pred             CCCCceEEEEEeccccccHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCC-ccchhhhhccCCCCcHHHHHHHHH
Q 022660           78 PPVAKFKVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDS-FPVYAEDIDAGGDASPSTAMLSEV  156 (294)
Q Consensus        78 ~~~~~~rValvQ~~v~~d~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~-~~~~~~~~~~~~~~~~~~~~l~~l  156 (294)
                      +.+++||||++|+++.+|.+.|++++.+++++|++.|+|||||||++++||...+ ....++..+     ++..+.|+++
T Consensus        10 m~~~~~kVa~vQ~~~~~d~~~nl~~~~~li~~A~~~gadlvv~PE~~~~~~~~~~~~~~~a~~~~-----~~~~~~l~~~   84 (440)
T 1ems_A           10 MATGRHFIAVCQMTSDNDLEKNFQAAKNMIERAGEKKCEMVFLPECFDFIGLNKNEQIDLAMATD-----CEYMEKYREL   84 (440)
T ss_dssp             CCCSEEEEEEECBCCCSCHHHHHHHHHHHHHHHHHTTCSEEEECTTCSCCCSSHHHHHHHHHHHH-----HHHHHHHHHH
T ss_pred             cccCCceEEEEecCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCcccccCcchhHHHHhhccCC-----CHHHHHHHHH
Confidence            5567899999999988999999999999999999999999999999998875421 111222222     4688999999


Q ss_pred             HHhcCcEEEEeeee--ee-eCCeeEEEEEEEccCCcEEEEEeecccCCCCCCCccccccccCccCCCCCeE-EEeCCceE
Q 022660          157 ARLLKITIVGGSIP--ER-SGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTI-VDTDVGRI  232 (294)
Q Consensus       157 A~~~~i~Iv~Gs~~--~~-~~~~~yNsa~vi~~~G~il~~y~K~~L~~~~~P~~~~f~E~~~f~~G~~~~v-~~~~~gri  232 (294)
                      |++++++|++|+..  ++ +++++||++++++++|+++++|+|+||+++++|.+..|.|..+|.+|++..+ |+++++|+
T Consensus        85 A~~~~i~iv~G~~~~~e~~~~~~~yNs~~~i~~~G~i~~~yrK~hL~~~~~P~~~~~~E~~~f~~G~~~~~~~~~~~~~i  164 (440)
T 1ems_A           85 ARKHNIWLSLGGLHHKDPSDAAHPWNTHLIIDSDGVTRAEYNKLHLFDLEIPGKVRLMESEFSKAGTEMIPPVDTPIGRL  164 (440)
T ss_dssp             HHHTTCEEEEEEEEEEETTEEEEEEEEEEEECTTSCEEEEEECCCCCEEEETTTEEEEGGGTCCCCCSCCCCEEETTEEE
T ss_pred             HHHcCeEEEeccccccccCCCCcEEEEEEEECCCCcEEEEEeeeeecCccCCCCCcccccccccCCCCCceeEECCCeeE
Confidence            99999999999665  44 3578999999999999999999999999876787777889999999999888 99999999


Q ss_pred             EEeeeccCcCcHHHHHHHHCCCeEEEEcCCCCCCCCHHHHHHHHHHHHHHhCCeeEeecc
Q 022660          233 GIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQVLPHSPFV  292 (294)
Q Consensus       233 gi~ICyD~~fpe~~r~la~~Gadlil~ps~~~~~~~~~~~~~l~~~RAiEn~~~vv~an~  292 (294)
                      |++||||++|||++|.++.+|||+|++|++|+...+..+|..+.++||+||++|||++|.
T Consensus       165 G~~ICyD~~fpe~~r~l~~~Ga~il~~psa~~~~~~~~~~~~~~~arA~En~~~vv~an~  224 (440)
T 1ems_A          165 GLSICYDVRFPELSLWNRKRGAQLLSFPSAFTLNTGLAHWETLLRARAIENQCYVVAAAQ  224 (440)
T ss_dssp             CCCCGGGGGCHHHHHHHHHTTCSEEECCBCCCHHHHHHHHHHHHHHHHHHHTCEEEECBB
T ss_pred             EEEEeccccChHHHHHHHHcCCcEEEECCcCCCCCcHHHHHHHHHHHHHhcCcEEEEecc
Confidence            999999999999999999999999999999876656789999999999999999999985

>2vhh_A CG3027-PA; hydrolase; 2.8A {Drosophila melanogaster} PDB: 2vhi_A

Probab=100.00  E-value=4.5e-40  Score=314.34  Aligned_cols=205  Identities=27%  Similarity=0.481  Sum_probs=169.6

Q ss_pred             CCCCceEEEEEecccc--------ccHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCC-----ccchhhhhccCC
Q 022660           78 PPVAKFKVGLCQLSVT--------ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDS-----FPVYAEDIDAGG  144 (294)
Q Consensus        78 ~~~~~~rValvQ~~v~--------~d~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~-----~~~~~~~~~~~~  144 (294)
                      ...++||||++|+++.        +|.+.|++++.+++++|++.|+|||||||++++||....     +..+++..    
T Consensus        68 ~~~~~~rVAlvQ~~i~~~~~~~~~~d~~~nl~~~~~li~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~ae~~----  143 (405)
T 2vhh_A           68 RKRRIVRVGAIQNSIVIPTTAPIEKQREAIWNKVKTMIKAAAEAGCNIVCTQEAWTMPFAFCTREKFPWCEFAEEA----  143 (405)
T ss_dssp             SCCCEEEEEEEECCCCSCSSSCHHHHHHHHHHHHHHHHHHHHHTTCSEEECCTTTTSCSCC---------CCCBCT----
T ss_pred             cCCCCCEEEEEeccccccccccccccHHHHHHHHHHHHHHHHHCCCCEEEcCCcccccccccccchhhHHHHHhhc----
Confidence            3445799999999863        478999999999999999999999999999999985421     11222222    


Q ss_pred             CCcHHHHHHHHHHHhcCcEEEEeeeeeee---CCeeEEEEEEEccCCcEEEEEeecccCCCCCCCccccccccCccCCCC
Q 022660          145 DASPSTAMLSEVARLLKITIVGGSIPERS---GDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGET  221 (294)
Q Consensus       145 ~~~~~~~~l~~lA~~~~i~Iv~Gs~~~~~---~~~~yNsa~vi~~~G~il~~y~K~~L~~~~~P~~~~f~E~~~f~~G~~  221 (294)
                      .++++++.|+++|++++++|++| +.+++   ++++||++++|+++|+++++|+|+||++++     .|.|..+|.+|+.
T Consensus       144 ~~~~~~~~l~~lA~~~~i~Iv~G-~~e~~~~~~~~~yNsa~vi~p~G~i~~~YrK~hL~~~g-----~f~E~~~f~~G~~  217 (405)
T 2vhh_A          144 ENGPTTKMLAELAKAYNMVIIHS-ILERDMEHGETIWNTAVVISNSGRYLGKHRKNHIPRVG-----DFNESTYYMEGNT  217 (405)
T ss_dssp             TTSHHHHHHHHHHHHTTCEEEEE-EEEEETTTTTEEEEEEEEECTTSCEEEEEECSCCCC---------------CCCCS
T ss_pred             cCCHHHHHHHHHHHHCCEEEEEe-ceecccCCCCcEEEEEEEECCCCeEEEEEecccCCCCC-----CcCcccceeCCCC
Confidence            13689999999999999999999 56665   578999999999999999999999997653     5678899999985


Q ss_pred             -CeEEEeCCceEEEeeeccCcCcHHHHHHHHCCCeEEEEcCCCCCCCCHHHHHHHHHHHHHHhCCeeEeecc
Q 022660          222 -PTIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQVLPHSPFV  292 (294)
Q Consensus       222 -~~v~~~~~grigi~ICyD~~fpe~~r~la~~Gadlil~ps~~~~~~~~~~~~~l~~~RAiEn~~~vv~an~  292 (294)
                       +.+|+++++|||++||||++|||.+|.++.+|||+|++|++|....+..+|..++++||+||++|||++|.
T Consensus       218 ~~~vf~~~~~riG~~ICyD~~fPe~~r~la~~GAdill~psa~~~~~~~~~w~~l~raRAiEn~~~Vv~aN~  289 (405)
T 2vhh_A          218 GHPVFETEFGKLAVNICYGRHHPQNWMMFGLNGAEIVFNPSATIGRLSEPLWSIEARNAAIANSYFTVPINR  289 (405)
T ss_dssp             CCCEEEETTEEEEECCGGGGGCHHHHHHHHHTTCSEEEEEECCBCTTTHHHHHHHHHHHHHHHTSEEEEEEC
T ss_pred             CCeeEEECCEEEEEEEeccccChHHHHHHHHcCCCEEEEcccCCCCCCHHHHHHHHHHHHHHcCceEEEecc
Confidence             89999999999999999999999999999999999999999876667789999999999999999999995

>1uf5_A N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 1.60A {Agrobacterium SP} SCOP: d.160.1.2 PDB: 1uf4_A* 1uf7_A* 1uf8_A* 1erz_A 1fo6_A 2ggl_A 2ggk_A

Probab=100.00  E-value=2.5e-39  Score=296.77  Aligned_cols=209  Identities=23%  Similarity=0.287  Sum_probs=171.7

Q ss_pred             CceEEEEEecccc---ccHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCcc-c---hhhhhccCCCCcHHHHHH
Q 022660           81 AKFKVGLCQLSVT---ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFP-V---YAEDIDAGGDASPSTAML  153 (294)
Q Consensus        81 ~~~rValvQ~~v~---~d~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~-~---~~~~~~~~~~~~~~~~~l  153 (294)
                      ++||||++|+++.   +|.+.|++++.+++++|++.|+|||||||++++||...++. .   .....+. ...++.++.|
T Consensus         2 ~~~~va~~Q~~~~~~~~d~~~n~~~~~~~i~~a~~~gadlvv~PE~~~~gy~~~~~~~~~~~~~~~~~~-~~~~~~~~~l   80 (303)
T 1uf5_A            2 RQMILAVGQQGPIARAETREQVVVRLLDMLTKAASRGANFIVFPELALTTFFPRWHFTDEAELDSFYET-EMPGPVVRPL   80 (303)
T ss_dssp             CEEEEEEEEBCCCCTTCCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTSCCGGGSCCCCHHHHHTTSBS-SSSCTTTHHH
T ss_pred             ccEEEEEEEecCcccccCHHHHHHHHHHHHHHHHhcCCCEEEeccccccCCCccccccchhhhHHHHhh-cCCCHHHHHH
Confidence            3689999999975   69999999999999999999999999999999999654310 0   0111111 1135788999


Q ss_pred             HHHHHhcCcEEEEeeeeeee-CC---eeEEEEEEEccCCcEEEEEeecccCCCC--CCCcccc--ccccCccCCC-CCeE
Q 022660          154 SEVARLLKITIVGGSIPERS-GD---RLYNTCCVFGSDGKLIAKHRKIHLFDID--IPGKITF--IESKSLTAGE-TPTI  224 (294)
Q Consensus       154 ~~lA~~~~i~Iv~Gs~~~~~-~~---~~yNsa~vi~~~G~il~~y~K~~L~~~~--~P~~~~f--~E~~~f~~G~-~~~v  224 (294)
                      +++|++++++|++| +++++ ++   ++||++++++++|+++++|+|+||++++  +|.. .|  .|..+|.+|+ ++.+
T Consensus        81 ~~~a~~~~~~iv~G-~~~~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~~~e~~p~~-~~~~~E~~~f~~G~~~~~v  158 (303)
T 1uf5_A           81 FEKAAELGIGFNLG-YAELVVEGGVKRRFNTSILVDKSGKIVGKYRKIHLPGHKEYEAYR-PFQHLEKRYFEPGDLGFPV  158 (303)
T ss_dssp             HHHHHHHTCEEEEE-EEEEEEETTEEEEEEEEEEECTTSCEEEEEECCCCCSCSSCCTTC-SSCCCHHHHCCCCSSCSCE
T ss_pred             HHHHHHhCeEEEEe-eeEecCCCCCcceeeEEEEECCCCCEeeeEeeeecCCcccccccc-cccccchhhccCCCCCCce
Confidence            99999999999999 45553 45   8999999999999999999999995332  3432 33  6888999999 8999


Q ss_pred             EEeCCceEEEeeeccCcCcHHHHHHHHCCCeEEEEcCC---CCCCC------CHHHHHHHHHHHHHHhCCeeEeecc
Q 022660          225 VDTDVGRIGIGICYDIRFQELAMIYGARGAHLICYPGA---FNMTT------GPLHWELLQRARATDNQVLPHSPFV  292 (294)
Q Consensus       225 ~~~~~grigi~ICyD~~fpe~~r~la~~Gadlil~ps~---~~~~~------~~~~~~~l~~~RAiEn~~~vv~an~  292 (294)
                      |+++++|+|++||||++|||++|.++++|||+|+++++   |+...      ...+|..+.++||+||++|||++|.
T Consensus       159 ~~~~~~~ig~~ICyD~~fpe~~r~l~~~ga~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv~~n~  235 (303)
T 1uf5_A          159 YDVDAAKMGMFIANDRRWPEAWRVMGLRGAEIICGGYNTPTHNPPVPQHDHLTSFHHLLSMQAGSYQNGAWSAAAGK  235 (303)
T ss_dssp             EEETTEEEEECCGGGGGCHHHHHHHHHTTCSEEEEEECCBSCCTTCGGGGGGHHHHHHHHHHHHHHHHTCEEEEEEB
T ss_pred             EecCCceEEEEEecCccCHHHHHHHHHCCCCEEEEecCCccccccccCCccccHHHHHHHHHhhhhcCCcEEEEECc
Confidence            99999999999999999999999999999999966554   44443      4568888899999999999999985

>2dyu_A Formamidase; AMIF, CEK, catalytic triad, helicobacter pylori aliphatic amidase, hydrolase; 1.75A {Helicobacter pylori} PDB: 2dyv_A 2e2l_A 2e2k_A

Probab=100.00  E-value=5.5e-38  Score=292.80  Aligned_cols=196  Identities=21%  Similarity=0.300  Sum_probs=166.2

Q ss_pred             CCceEEEEEecccc-----ccHHHHHHHHHHHHHHHHH--CCCcEEEcCCCCCCCCCCCC--ccchhhhhccCCCCcHHH
Q 022660           80 VAKFKVGLCQLSVT-----ADKERNIAHARRAIEEAAE--KGAKLILLPEIWNSPYSHDS--FPVYAEDIDAGGDASPST  150 (294)
Q Consensus        80 ~~~~rValvQ~~v~-----~d~~~n~~~i~~~i~~A~~--~gadLVVfPE~~l~gy~~~~--~~~~~~~~~~~~~~~~~~  150 (294)
                      .++||||++|+++.     +|.+.|++++.+++++|++  .|+|||||||++++||..+.  ...+++.     .+++.+
T Consensus        11 ~~~~~Va~vQ~~i~~~~~~~d~~~nl~~~~~li~~A~~~~~gadLVVfPE~~l~G~~~~~~~~~~~a~~-----~~~~~~   85 (334)
T 2dyu_A           11 IEGFLVAAIQFPVPIVNSRKDIDHNIESIIRTLHATKAGYPGVELIIFPEYSTQGLNTAKWLSEEFLLD-----VPGKET   85 (334)
T ss_dssp             --CEEEEEECCBCCCCCSHHHHHHHHHHHHHHHHHHHHHCTTEEEEECCTTTTTCCCTTTTTSGGGCBC-----SSSHHH
T ss_pred             CCccEEEEEecCCccCCchhhHHHHHHHHHHHHHHHHhcCCCCcEEEcCCCccccCCCChhHHHHhhcc-----CCCHHH
Confidence            34699999999852     6889999999999999987  79999999999999986543  2222222     235799


Q ss_pred             HHHHHHHHhcCcEEEEeeeeeee-CCe--eEEEEEEEccCCcEEEEEeecccCCCCCCCccccccccCccCCCCCe-EEE
Q 022660          151 AMLSEVARLLKITIVGGSIPERS-GDR--LYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPT-IVD  226 (294)
Q Consensus       151 ~~l~~lA~~~~i~Iv~Gs~~~~~-~~~--~yNsa~vi~~~G~il~~y~K~~L~~~~~P~~~~f~E~~~f~~G~~~~-v~~  226 (294)
                      +.|+++|+++++++++| +++++ +++  +||++++++++|+++.+|+|+|||+          |..+|.+|++.. +|+
T Consensus        86 ~~l~~~a~~~~i~iv~G-~~e~~~~~~~~~yNsa~vi~p~G~i~~~YrK~hlf~----------e~~~f~~G~~~~~v~~  154 (334)
T 2dyu_A           86 ELYAKACKEAKVYGVFS-IMERNPDSNKNPYNTAIIIDPQGEIILKYRKLFPWN----------PIEPWYPGDLGMPVCE  154 (334)
T ss_dssp             HHHHHHHHHHTCEEEEE-EEECCSSTTSCCEEEEEEECTTSCEEEEEECSSCCT----------TTCCCCCCCSCCCCEE
T ss_pred             HHHHHHHHHhCeEEEEe-eEEECCCCCceeEEEEEEECCCCCEEEEEeeccCCC----------CcccCcCCCCCceeEE
Confidence            99999999999999999 55664 344  9999999999999999999999854          345689998755 999


Q ss_pred             eC-CceEEEeeeccCcCcHHHHHHHHCCCeEEEEcCCCCCCCCHHHHHHHHHHHHHHhCCeeEeecc
Q 022660          227 TD-VGRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQVLPHSPFV  292 (294)
Q Consensus       227 ~~-~grigi~ICyD~~fpe~~r~la~~Gadlil~ps~~~~~~~~~~~~~l~~~RAiEn~~~vv~an~  292 (294)
                      ++ +.|+|++||||++|||++|.++.+|||+|++|++|+.. ...+|..+.++||+||++|||++|.
T Consensus       155 ~~~g~~iG~~ICyD~~fpe~~r~~~~~Gadlil~psaw~~~-~~~~~~~~~~arA~En~~~vv~an~  220 (334)
T 2dyu_A          155 GPGGSKLAVCICHDGMIPELAREAAYKGCNVYIRISGYSTQ-VNDQWILTNRSNAWHNLMYTVSVNL  220 (334)
T ss_dssp             CGGGCEEEEEEGGGGGCHHHHHHHHHTTCSEEEEEESSCTT-SHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred             CCCCCEEEEEEECCCCchHHHHHHHHcCCCEEEEeCCCCCC-cHHHHHHHHHHHHHhCCCEEEEECC
Confidence            85 55999999999999999999999999999999998643 5679999999999999999999996

>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.79A {Cytophaga hutchinsonii atcc 33406}

Probab=100.00  E-value=3.3e-38  Score=316.57  Aligned_cols=201  Identities=21%  Similarity=0.273  Sum_probs=170.1

Q ss_pred             CCCceEEEEEecccc-ccHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHH
Q 022660           79 PVAKFKVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVA  157 (294)
Q Consensus        79 ~~~~~rValvQ~~v~-~d~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA  157 (294)
                      +|++||||++|+++. +|.+.|++++.+++++|+++|||||||||++++||.+.++.. .+.+.     ++..+.|+++|
T Consensus         2 ~M~~~rVA~~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGY~~~dl~~-~~~~~-----~~~~~~l~~la   75 (634)
T 3ilv_A            2 SLSTIRIGGAAVNQTPIDWENNVKNILDAIEEAKNANVEILCLPELCITGYGCEDLFL-TDWVA-----ETAIEYCFEIA   75 (634)
T ss_dssp             --CEEEEEEEEECCCTTCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTTCSCCGGGGG-SHHHH-----HHHHHHHHHHH
T ss_pred             CCCCeEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEcCCCccccCChHHHhh-Chhhh-----HHHHHHHHHHH
Confidence            367899999999987 899999999999999999999999999999999999876532 22222     35788999999


Q ss_pred             Hhc-CcEEEEeeeeeeeCCeeEEEEEEEccCCcEEEEEeecccCCCCCCCccccccccCccCCCCC--------------
Q 022660          158 RLL-KITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETP--------------  222 (294)
Q Consensus       158 ~~~-~i~Iv~Gs~~~~~~~~~yNsa~vi~~~G~il~~y~K~~L~~~~~P~~~~f~E~~~f~~G~~~--------------  222 (294)
                      +++ +++|++| ++++.++++||+++++ ++|++++.|+|+||++++     .|.|.++|.+|+..              
T Consensus        76 ~~~~~i~ivvG-~p~~~~~~lyNsa~vi-~~G~il~~y~K~hL~~~~-----~f~E~r~f~pG~~~~~~~~~~~g~~~p~  148 (634)
T 3ilv_A           76 ASCTDITVSLG-LPMRIAGITYNCVCLV-ENGIVKGFSAKQFLANEG-----VHYETRWFTAWPRNHTTTFLYNDVKYPF  148 (634)
T ss_dssp             TTCTTSEEEEE-EEEEETTEEEEEEEEE-ETTEEEEEEECSSCCCST-----TCCGGGTCCCCCTTCEEEEEETTEEEEE
T ss_pred             HhCCCCEEEEe-eeEeeCCCccEEEEEE-ECCeEEEEEcCEeCCCCC-----CcChhhhcCCCCccccceecccCccccc
Confidence            996 9999999 7888899999999999 799999999999996654     68899999999875              


Q ss_pred             --eEEEeCCceEEEeeeccCcCcH-HHHHHHHCCCeEEEEcCCCCCCCCH-HHHHHHHHHHHHHhCCeeEeecc
Q 022660          223 --TIVDTDVGRIGIGICYDIRFQE-LAMIYGARGAHLICYPGAFNMTTGP-LHWELLQRARATDNQVLPHSPFV  292 (294)
Q Consensus       223 --~v~~~~~grigi~ICyD~~fpe-~~r~la~~Gadlil~ps~~~~~~~~-~~~~~l~~~RAiEn~~~vv~an~  292 (294)
                        .+|+++++|||+.||||+|||+ +++.++.+|||+|++|++|++..+. .+|..+.++||+||++|+|++|.
T Consensus       149 g~~vf~~~g~~iG~~IC~D~~fPe~~~r~la~~GAdii~~psas~~~~gk~~~~~~l~~~rA~e~~~~vv~aN~  222 (634)
T 3ilv_A          149 GDVLYNVKDARIGFEICEDAWRTDRVGIRHYEKGATLVLNPSASHFAFGKSAIRYDLVIGGSERFDCTYVYANL  222 (634)
T ss_dssp             ESCCEEETTEEEEECCTTC----------CGGGTCSEEEEEECCBCCTTHHHHHHHHHHHHHHHTTSEEEEEEC
T ss_pred             CCeEEEECCEEEEEEEeccccCChHHHHHHHHCCCcEEEEecCCccccCcHHHHHHHHHHHHHHhCCEEEEEcC
Confidence              6899999999999999999998 9999999999999999999877665 68999999999999999999995

>2uxy_A Aliphatic amidase; nitrilase superfamily, hydrolase, acyl transfer, thiol enzymes, hydroxamic acid; HET: C3Y; 1.25A {Pseudomonas aeruginosa} PDB: 2plq_A

Probab=100.00  E-value=3.2e-38  Score=295.23  Aligned_cols=197  Identities=18%  Similarity=0.167  Sum_probs=168.2

Q ss_pred             CCCceEEEEEeccc-----cccHHHHHHHHHHHHHHHHH--CCCcEEEcCCCCCCCCCCCC--ccchhhhhccCCCCcHH
Q 022660           79 PVAKFKVGLCQLSV-----TADKERNIAHARRAIEEAAE--KGAKLILLPEIWNSPYSHDS--FPVYAEDIDAGGDASPS  149 (294)
Q Consensus        79 ~~~~~rValvQ~~v-----~~d~~~n~~~i~~~i~~A~~--~gadLVVfPE~~l~gy~~~~--~~~~~~~~~~~~~~~~~  149 (294)
                      +.++||||++|+++     .+|.+.|++++.+++++|++  .|+|||||||++++||....  +..+++.     .+++.
T Consensus         9 ~~~~~kValvQ~~i~~~~~~~d~~~Nl~~i~~~i~~A~~~~~gadLVVfPE~~l~G~~~~~~~~~~~a~~-----~~~~~   83 (341)
T 2uxy_A            9 SNDTVGVAVVNYKMPRLHTAAEVLDNARKIAEMIVGMKQGLPGMDLVVFPEYSLQGIMYDPAEMMETAVA-----IPGEE   83 (341)
T ss_dssp             CTTEEEEEEECCBCCBCCSHHHHHHHHHHHHHHHHHHHHHCTTEEEEECCTTTTTBCCCSHHHHHHHCBC-----SSSHH
T ss_pred             CCCccEEEEEECCcccCCCccCHHHHHHHHHHHHHHHHhcCCCCcEEEeCCCcccccCCCHHHHHHHhcc-----CCCHH
Confidence            34679999999985     26899999999999999987  79999999999999976432  1122222     23579


Q ss_pred             HHHHHHHHHhcCcEEEEeeee-eeeC----CeeEEEEEEEccCCcEEEEEeecccCCCCCCCccccccccCccCCCCCeE
Q 022660          150 TAMLSEVARLLKITIVGGSIP-ERSG----DRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTI  224 (294)
Q Consensus       150 ~~~l~~lA~~~~i~Iv~Gs~~-~~~~----~~~yNsa~vi~~~G~il~~y~K~~L~~~~~P~~~~f~E~~~f~~G~~~~v  224 (294)
                      ++.|+++|+++++++++| +. ++.+    +++||++++++++|+++.+|+|+|||+          |..+|.+|++..+
T Consensus        84 ~~~l~~~a~~~~i~iv~G-~~ge~~~~~~~~~~yNsa~vi~p~G~i~~~Y~K~hlf~----------e~~~f~pG~~~~v  152 (341)
T 2uxy_A           84 TEIFSRACRKANVWGVFS-LTGERHEEHPRKAPYNTLVLIDNNGEIVQKYRKIIPWC----------PIEGWYPGGQTYV  152 (341)
T ss_dssp             HHHHHHHHHHHTCEEEEE-EEEECCTTTTSSCCEEEEEEECTTSCEEEEEECSSCCT----------TTCCCBCCCCCCC
T ss_pred             HHHHHHHHHHhCcEEEEE-eeeeEcCCCCCCceEEEEEEECCCCcEEEEEEeeccCC----------CccceeCCCCceE
Confidence            999999999999999998 45 5542    349999999999999999999999854          4457899999999


Q ss_pred             EEeC-CceEEEeeeccCcCcHHHHHHHHCCCeEEEEcCCCCCCCCHHHHHHHHHHHHHHhCCeeEeecc
Q 022660          225 VDTD-VGRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQVLPHSPFV  292 (294)
Q Consensus       225 ~~~~-~grigi~ICyD~~fpe~~r~la~~Gadlil~ps~~~~~~~~~~~~~l~~~RAiEn~~~vv~an~  292 (294)
                      |+++ +.|||++||||++|||++|.++.+|||+|++|++|+. ....+|..+.++||+||++|||++|.
T Consensus       153 ~~~~~G~riG~~ICyD~~fpe~~r~l~~~Gadlll~psa~~~-~~~~~~~~l~~arA~En~~~vv~an~  220 (341)
T 2uxy_A          153 SEGPKGMKISLIIXDDGNYPEIWRDCAMKGAELIVRCQGYMY-PAKDQQVMMAKAMAWANNCYVAVANA  220 (341)
T ss_dssp             EECGGGCEEEEEEGGGGGSHHHHHHHHHTTCSEEEEEECCBT-TCHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred             EECCCCCEEEEEEccCCcCcHHHHHHHHcCCCEEEEcCCCCC-CcHHHHHHHHHHHHHhCCcEEEEECC
Confidence            9995 5599999999999999999999999999999999865 35789999999999999999999995

>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ligase; 1.75A {Burkholderia thailandensis}

Probab=100.00  E-value=2.2e-37  Score=306.76  Aligned_cols=199  Identities=24%  Similarity=0.320  Sum_probs=170.7

Q ss_pred             CceEEEEEecccc-ccHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHH-
Q 022660           81 AKFKVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVAR-  158 (294)
Q Consensus        81 ~~~rValvQ~~v~-~d~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~-  158 (294)
                      .+||||++|+++. +|++.|++++.+++++|+++|||||||||++++||+++++......+.      ...+.+.++++ 
T Consensus         5 MkmKIAlaQln~~vGD~~~N~~~i~~~i~~Aa~~GAdLvvfPEL~ltGY~~~Dl~~~~~~~~------~~~~~l~~la~~   78 (565)
T 4f4h_A            5 MKTRIALAQLNVTVGDFAGNVAKIVAAAQAAHDAGAHFLIAPELALSGYPPEDLLLRPAFYA------ASDAALAELAAQ   78 (565)
T ss_dssp             -CEEEEEEECCCCTTCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTTCSCCGGGGGCHHHHH------HHHHHHHHHHHH
T ss_pred             cceEEEEEECCCCcccHHHHHHHHHHHHHHHHHCCCcEEECCCCcccCCChHHhhhCHHHHH------HHHHHHHHHHHH
Confidence            3699999999976 999999999999999999999999999999999999887643222222      13333444443 


Q ss_pred             ---hcCcEEEEeeeeeeeC----------------CeeEEEEEEEccCCcEEEEEeecccCCCCCCCccccccccCccCC
Q 022660          159 ---LLKITIVGGSIPERSG----------------DRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAG  219 (294)
Q Consensus       159 ---~~~i~Iv~Gs~~~~~~----------------~~~yNsa~vi~~~G~il~~y~K~~L~~~~~P~~~~f~E~~~f~~G  219 (294)
                         ..++++++| .+.+..                +++||+++++. +|++++.|+|+||     |++..|.|.++|.+|
T Consensus        79 ~~~~~~i~ivvG-~p~~~~~~~~~~~~~~~~~~~~~~lyNsa~vi~-~G~i~~~y~K~hL-----p~~~~f~E~r~f~~G  151 (565)
T 4f4h_A           79 LKPFAGLAVLVG-HPLRAPSADGNANRAIERGVPPVDTYNAASLIV-GGEVAGTYRKQDL-----PNTEVFDEKRYFATD  151 (565)
T ss_dssp             HTTSTTCEEEEE-EEEECC-----CCCCCCTTSCCCSEEEEEEEEE-TTEEEEEEECCSC-----CCSTTCCGGGTCCCC
T ss_pred             hhhcCCcEEEEe-eeeeecccccccccceecccCCCceEEEEEEEE-CCEEEEEEeeeec-----CCCcccceeccccCC
Confidence               357899998 565432                35999999996 7999999999999     555689999999999


Q ss_pred             CCCeEEEeCCceEEEeeeccCcCcHHHHHHHHCCCeEEEEcCCCCCCCCH-HHHHHHHHHHHHHhCCeeEeecc
Q 022660          220 ETPTIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTGP-LHWELLQRARATDNQVLPHSPFV  292 (294)
Q Consensus       220 ~~~~v~~~~~grigi~ICyD~~fpe~~r~la~~Gadlil~ps~~~~~~~~-~~~~~l~~~RAiEn~~~vv~an~  292 (294)
                      +.+.+|+++++|||+.||||+||||.+|.++.+||++|++|++++...+. .+|..+.++||+||++|+|.+|+
T Consensus       152 ~~~~v~~~~g~~iGv~IC~Dlwfpe~~r~la~~GA~ii~~psAs~~~~gk~~~r~~ll~arA~e~~~~vvy~N~  225 (565)
T 4f4h_A          152 AAPYVFELNGVKFGVVICEDVWHASAAQLAKAAGAQVLIVPNGSPYHMNKDAVRIDILRARIRETGLPMVYVNL  225 (565)
T ss_dssp             CCCCEEEETTEEEEECCGGGGGSSHHHHHHHHTTCSEEEEEECCBCCTTHHHHHHHHHHHHHHHHCCCEEEEEC
T ss_pred             CcceeEEecCcEEEEEEeehhcccchhHHHHhCCCeeeecccccccccCcHHHHHHHHHHHHHHhCCcEEEeee
Confidence            99999999999999999999999999999999999999999999988886 68889999999999999999996

>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis}

Probab=100.00  E-value=1.3e-37  Score=310.11  Aligned_cols=199  Identities=23%  Similarity=0.257  Sum_probs=176.5

Q ss_pred             CceEEEEEecccc-ccHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHh
Q 022660           81 AKFKVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARL  159 (294)
Q Consensus        81 ~~~rValvQ~~v~-~d~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~  159 (294)
                      .+||||++|+++. +|++.|++++.+++++|+++|||||||||++++||.+.++....+..      ++..+.|+++|++
T Consensus         3 ~~~rvA~~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy~~~dl~~~~~~~------~~~~~~l~~la~~   76 (590)
T 3n05_A            3 LQLRLALNQIDSTVGDIAGNAEAILRWTRHSAEQGAHLVAFPEMALTGYPVEDLALRSSFV------EASRTALRELAAR   76 (590)
T ss_dssp             EEEEEEEEECCCCTTCHHHHHHHHHHHHHHHHTTTCSEEECCTTTTTCSCCGGGGGCHHHH------HHHHHHHHHHHHH
T ss_pred             CccEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCcccccCCChHHHhhCHHHH------HHHHHHHHHHHHh
Confidence            4699999999986 99999999999999999999999999999999999987654433322      2578889999999


Q ss_pred             c--C----cEEEEeeeeeeeC----------CeeEEEEEEEccCCcEEEEEeecccCCCCCCCccccccccCccCCCCCe
Q 022660          160 L--K----ITIVGGSIPERSG----------DRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPT  223 (294)
Q Consensus       160 ~--~----i~Iv~Gs~~~~~~----------~~~yNsa~vi~~~G~il~~y~K~~L~~~~~P~~~~f~E~~~f~~G~~~~  223 (294)
                      +  +    ++|++|+ +++.+          +++||++++++ +|++++.|+|+||++++     .|.|.++|.+|+++.
T Consensus        77 ~~~~~~~~i~ivvG~-~~~~~~~~~~~~~~~~~lyNsa~vi~-~G~i~~~y~K~~L~~~~-----~f~E~r~f~~G~~~~  149 (590)
T 3n05_A           77 LAEEGFGELPVLVGY-LDRSESAQPKYGQPAGAPRNAAAVLH-RGRVALTFAKHHLPNYG-----VFDEFRYFVPGDTMP  149 (590)
T ss_dssp             HHHTTCTTSCEEEEE-EEECSSCBTTTTBCTTCEEEEEEEEE-TTEEEEEEECCCCCSSS-----SCCHHHHCCCCCEEE
T ss_pred             hhhccCCceEEEEee-EEEEcCcccccccccCCeeEEEEEEe-CCEEEEEEeCccCCCCC-----ccCccccccCCCcce
Confidence            8  6    9999994 55542          37999999998 99999999999996654     688999999999999


Q ss_pred             EEEeCCceEEEeeeccCcC-cHHHHHHHHCCCeEEEEcCCCCCCCCH-HHHHHHHHHHHHHhCCeeEeecc
Q 022660          224 IVDTDVGRIGIGICYDIRF-QELAMIYGARGAHLICYPGAFNMTTGP-LHWELLQRARATDNQVLPHSPFV  292 (294)
Q Consensus       224 v~~~~~grigi~ICyD~~f-pe~~r~la~~Gadlil~ps~~~~~~~~-~~~~~l~~~RAiEn~~~vv~an~  292 (294)
                      +|+++++|||++||||+|| |++.+.++.+|||+|++|++|++..+. .+|..+.++||+||++|+|++|.
T Consensus       150 v~~~~g~~iG~~IC~D~~f~pe~~~~la~~Ga~ii~~psa~p~~~gk~~~~~~l~~~rA~e~~~~vv~an~  220 (590)
T 3n05_A          150 IVRLHGVDIALAICEDLWQDGGRVPAARSAGAGLLLSVNASPYERDKDDTRLELVRKRAQEAGCTTAYLAM  220 (590)
T ss_dssp             EEEETTEEEEEEEGGGGGSTTSHHHHHHHTTCSEEEEEECCBCCCCSSCHHHHHHHHHHHHHTSEEEEEEC
T ss_pred             EEEECCEEEEEEeehhhccCChHHHHHHHcCCCEEEEecCCccccCcHHHHHHHHHHHHHHhCCEEEEEec
Confidence            9999999999999999999 999999999999999999998876553 68899999999999999999996

>3sdb_A Glutamine-dependent NAD(+) synthetase; glutamine-amidotransferase, glutaminase, glutamine-dependent synthetase, ligase; 2.00A {Mycobacterium tuberculosis} PDB: 3seq_A* 3sez_A* 3szg_A* 3dla_A* 3syt_A*

Probab=100.00  E-value=5.6e-35  Score=294.90  Aligned_cols=204  Identities=21%  Similarity=0.213  Sum_probs=172.5

Q ss_pred             CCCCceEEEEEecccc-ccHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHH
Q 022660           78 PPVAKFKVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEV  156 (294)
Q Consensus        78 ~~~~~~rValvQ~~v~-~d~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~l  156 (294)
                      +.++.||||++|+++. +|++.|++++.+++++|+++|+|||||||++++||.+.++....+.++.   ..+.++.|.++
T Consensus         8 ~~~g~~rVAl~Q~~~~~~D~~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGY~~~dl~~~~~~~~~---~~~~l~~l~~~   84 (680)
T 3sdb_A            8 YQHGFVRVAACTHHTTIGDPAANAASVLDMARACHDDGAALAVFPELTLSGYSIEDVLLQDSLLDA---VEDALLDLVTE   84 (680)
T ss_dssp             GGGTEEEEEEEECCCCTTCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTTCGGGGGGGGCHHHHHH---HHHHHHHHHHH
T ss_pred             hhCCCeEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCCcccCCChHHHhhCHHHHHh---hHHHHHHHHHH
Confidence            4567899999999987 9999999999999999999999999999999999998765332222221   13688999999


Q ss_pred             HHhcCcEEEEeeeeeeeCCeeEEEEEEEccCCcEEEEEeecccCCCCCCCccccccccCccCCCCCe-------------
Q 022660          157 ARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPT-------------  223 (294)
Q Consensus       157 A~~~~i~Iv~Gs~~~~~~~~~yNsa~vi~~~G~il~~y~K~~L~~~~~P~~~~f~E~~~f~~G~~~~-------------  223 (294)
                      |++++++|++| .+++.++++||++++++ +|++++.|+|+||++++     .|.|.++|.+|++..             
T Consensus        85 a~~~~i~ivvG-~p~~~~~~lyNsa~vi~-~G~il~~y~K~hL~~~~-----~f~E~r~F~~G~~~~~~i~~~g~~vpfg  157 (680)
T 3sdb_A           85 SADLLPVLVVG-APLRHRHRIYNTAVVIH-RGAVLGVVPKSYLPTYR-----EFYERRQMAPGDGERGTIRIGGADVAFG  157 (680)
T ss_dssp             HTTCSSEEEEE-EEEEETTEEEEEEEEEE-TTEEEEEEECSCCCEET-----TEEGGGTEECCTTCCSEEEETTEEEEBS
T ss_pred             hhcCCcEEEEe-ceEEeCCCceEEEEEEe-CCCEEEEEeeecCCCCC-----ccChhhhcCCCCCCCceeeecCcccccC
Confidence            99999999999 68888899999999999 99999999999996654     788999999998752             


Q ss_pred             ---EE---EeCCceEEEeeeccCcCcHHH-HHHHHCCCeEEEEcCCCCCCCCHHH-HHHHHHHHHHHhCCeeEeec
Q 022660          224 ---IV---DTDVGRIGIGICYDIRFQELA-MIYGARGAHLICYPGAFNMTTGPLH-WELLQRARATDNQVLPHSPF  291 (294)
Q Consensus       224 ---v~---~~~~grigi~ICyD~~fpe~~-r~la~~Gadlil~ps~~~~~~~~~~-~~~l~~~RAiEn~~~vv~an  291 (294)
                         +|   +++++|||+.||||+|||+.. +.++.+|||+|++|++|+...+..+ |..+.+.|+.+++..+|.+|
T Consensus       158 ~~~vf~~~~~~g~riGv~IC~Dl~fPe~~~r~la~~GAdiil~pSasp~~~gk~~~r~~l~~~~aar~~~~yV~a~  233 (680)
T 3sdb_A          158 TDLLFAASDLPGFVLHVEIAEDMFVPMPPSAEAALAGATVLANLSGSPITIGRAEDRRLLARSASARCLAAYVYAA  233 (680)
T ss_dssp             SCEEEEETTCTTCEEEEEEGGGGGSSSCHHHHHHHHTCCEEEEECCCCCCTTHHHHHHHHHHHHHHHTTSEEEEEC
T ss_pred             CceeEeeeccCCeEEEEEEeccccccccHHHHHHhcCCeEEEEecCCccccCcHHHHHHHHHHHHHHhCCcEEEEE
Confidence               46   688999999999999999996 8999999999999999988777754 45677888788654444444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	294
d1emsa2	271	d.160.1.1 (A:10-280) NIT-FHIT fusion protein, N-te	2e-29
d1uf5a_	303	d.160.1.2 (A:) N-carbamoyl-D-aminoacid amidohydrol	7e-27
d1j31a_	262	d.160.1.2 (A:) Hypothetical protein PH0642 {Archae	7e-25
d1f89a_	281	d.160.1.1 (A:) hypothetical protein yl85 {Baker's	2e-20

>d1emsa2 d.160.1.1 (A:10-280) NIT-FHIT fusion protein, N-terminal domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Carbon-nitrogen hydrolase
superfamily: Carbon-nitrogen hydrolase
family: Nitrilase
domain: NIT-FHIT fusion protein, N-terminal domain
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score =  110 bits (276), Expect = 2e-29
 Identities = 71/208 (34%), Positives = 110/208 (52%), Gaps = 8/208 (3%)

Query: 82  KFKVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDID 141
           +  + +CQ++   D E+N   A+  IE A EK  +++ LPE ++    + +  +      
Sbjct: 5   RHFIAVCQMTSDNDLEKNFQAAKNMIERAGEKKCEMVFLPECFDFIGLNKNEQIDLAMAT 64

Query: 142 AGGDASPSTAMLSEVARLLKITIVGGSIPER---SGDRLYNTCCVFGSDGKLIAKHRKIH 198
                        E+AR   I +  G +  +        +NT  +  SDG   A++ K+H
Sbjct: 65  DC----EYMEKYRELARKHNIWLSLGGLHHKDPSDAAHPWNTHLIIDSDGVTRAEYNKLH 120

Query: 199 LFDIDIPGKITFIESKSLTAGETP-TIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLI 257
           LFD++IPGK+  +ES+   AG      VDT +GR+G+ ICYD+RF EL++    RGA L+
Sbjct: 121 LFDLEIPGKVRLMESEFSKAGTEMIPPVDTPIGRLGLSICYDVRFPELSLWNRKRGAQLL 180

Query: 258 CYPGAFNMTTGPLHWELLQRARATDNQV 285
            +P AF + TG  HWE L RARA +NQ 
Sbjct: 181 SFPSAFTLNTGLAHWETLLRARAIENQC 208

>d1uf5a_ d.160.1.2 (A:) N-carbamoyl-D-aminoacid amidohydrolase {Agrobacterium sp. [TaxId: 361]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Carbon-nitrogen hydrolase
superfamily: Carbon-nitrogen hydrolase
family: Carbamilase
domain: N-carbamoyl-D-aminoacid amidohydrolase
species: Agrobacterium sp. [TaxId: 361]

 Score =  104 bits (260), Expect = 7e-27
 Identities = 44/201 (21%), Positives = 75/201 (37%), Gaps = 13/201 (6%)

Query: 82  KFKVGLCQLSVTA---DKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAE 138
           +  + + Q    A    +E+ +      + +AA +GA  I+ PE+  + +          
Sbjct: 3   QMILAVGQQGPIARAETREQVVVRLLDMLTKAASRGANFIVFPELALTTFFPRWHFTDEA 62

Query: 139 DIDAGGDAS---PSTAMLSEVARLLKITIVGGS---IPERSGDRLYNTCCVFGSDGKLIA 192
           ++D+  +     P    L E A  L I    G    + E    R +NT  +    GK++ 
Sbjct: 63  ELDSFYETEMPGPVVRPLFEKAAELGIGFNLGYAELVVEGGVKRRFNTSILVDKSGKIVG 122

Query: 193 KHRKIHLFDIDIP----GKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQELAMI 248
           K+RKIHL                +           + D D  ++G+ I  D R+ E   +
Sbjct: 123 KYRKIHLPGHKEYEAYRPFQHLEKRYFEPGDLGFPVYDVDAAKMGMFIANDRRWPEAWRV 182

Query: 249 YGARGAHLICYPGAFNMTTGP 269
            G RGA +IC          P
Sbjct: 183 MGLRGAEIICGGYNTPTHNPP 203

>d1j31a_ d.160.1.2 (A:) Hypothetical protein PH0642 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Carbon-nitrogen hydrolase
superfamily: Carbon-nitrogen hydrolase
family: Carbamilase
domain: Hypothetical protein PH0642
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 98.2 bits (243), Expect = 7e-25
 Identities = 52/191 (27%), Positives = 89/191 (46%), Gaps = 14/191 (7%)

Query: 84  KVGLCQL-SVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDA 142
           KVG  Q+     + ++N + A + I+EA+++GAKL++LPE++++ Y+ +S     +    
Sbjct: 3   KVGYIQMEPKILELDKNYSKAEKLIKEASKEGAKLVVLPELFDTGYNFESREEVFDVAQQ 62

Query: 143 GGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDI 202
             +   +T  L E+AR L + IV G+  +       +   V       I K+RKIHLF  
Sbjct: 63  IPE-GETTTFLMELARELGLYIVAGTAEKSGNYLYNSAVVVG--PRGYIGKYRKIHLF-- 117

Query: 203 DIPGKITFIESKSLTAGETP-TIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICYPG 261
                  + E      G+    + D    ++G+ IC+D  F E A     +GA +I +P 
Sbjct: 118 -------YREKVFFEPGDLGFKVFDIGFAKVGVMICFDWFFPESARTLALKGAEIIAHPA 170

Query: 262 AFNMTTGPLHW 272
              M   P   
Sbjct: 171 NLVMPYAPRAM 181

>d1f89a_ d.160.1.1 (A:) hypothetical protein yl85 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 281

class: Alpha and beta proteins (a+b)
fold: Carbon-nitrogen hydrolase
superfamily: Carbon-nitrogen hydrolase
family: Nitrilase
domain: hypothetical protein yl85
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 86.8 bits (213), Expect = 2e-20
 Identities = 108/212 (50%), Positives = 137/212 (64%), Gaps = 6/212 (2%)

Query: 82  KFKVGLCQLS-VTADKERNIAHARRAIEEAAEK--GAKLILLPEIWNSPYSHDSFPVYAE 138
           K KV L QLS  + DK  N+  A   IE A ++    KL++LPE +NSPYS D F  Y+E
Sbjct: 9   KIKVALVQLSGSSPDKMANLQRAATFIERAMKEQPDTKLVVLPECFNSPYSTDQFRKYSE 68

Query: 139 DIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSG--DRLYNTCCVFGSDGKLIAKHRK 196
            I+     S S   LS +A   KI +VGG+IPE     D++YNT  +F  DGKLI KHRK
Sbjct: 69  VINPKEP-STSVQFLSNLANKFKIILVGGTIPELDPKTDKIYNTSIIFNEDGKLIDKHRK 127

Query: 197 IHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQELAMIYGARGAHL 256
           +HLFD+DIP  I+F ES++L+ GE  T +DT  G+ G+GICYD+RF ELAM+   +GA  
Sbjct: 128 VHLFDVDIPNGISFHESETLSPGEKSTTIDTKYGKFGVGICYDMRFPELAMLSARKGAFA 187

Query: 257 ICYPGAFNMTTGPLHWELLQRARATDNQVLPH 288
           + YP AFN  TGPLHW LL R+RA DNQV   
Sbjct: 188 MIYPSAFNTVTGPLHWHLLARSRAVDNQVYVM 219

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	294
d1j31a_	262	Hypothetical protein PH0642 {Archaeon Pyrococcus h	100.0
d1f89a_	281	hypothetical protein yl85 {Baker's yeast (Saccharo	100.0
d1uf5a_	303	N-carbamoyl-D-aminoacid amidohydrolase {Agrobacter	100.0
d1emsa2	271	NIT-FHIT fusion protein, N-terminal domain {Nemato	100.0
d1uf5a_	303	N-carbamoyl-D-aminoacid amidohydrolase {Agrobacter	81.62

>d1j31a_ d.160.1.2 (A:) Hypothetical protein PH0642 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: Carbon-nitrogen hydrolase
superfamily: Carbon-nitrogen hydrolase
family: Carbamilase
domain: Hypothetical protein PH0642
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=6e-39  Score=286.66  Aligned_cols=194  Identities=32%  Similarity=0.475  Sum_probs=169.9

Q ss_pred             eEEEEEecccc-ccHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHhcC
Q 022660           83 FKVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLK  161 (294)
Q Consensus        83 ~rValvQ~~v~-~d~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~  161 (294)
                      ||||++|+++. +|++.|++++++++++|+++|+|||||||++++||...+.....+... ....++..+.++++|++++
T Consensus         2 ~ria~~Q~~~~~~d~e~nl~~i~~~i~~A~~~gadlvvfPE~~l~gy~~~~~~~~~~~~~-~~~~~~~~~~~~~~A~~~~   80 (262)
T d1j31a_           2 VKVGYIQMEPKILELDKNYSKAEKLIKEASKEGAKLVVLPELFDTGYNFESREEVFDVAQ-QIPEGETTTFLMELARELG   80 (262)
T ss_dssp             EEEEEEECCCCTTCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTTCSCCSSHHHHHTTCB-CTTTSHHHHHHHHHHHHHT
T ss_pred             EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCccccCCchhhhhHhhhhhh-hcccCHHHHHHHHhhhccC
Confidence            79999999965 999999999999999999999999999999999998876443332211 1224689999999999999


Q ss_pred             cEEEEeeeeeeeCCeeEEEEEEEccCCcEEEEEeecccCCCCCCCccccccccCccCCCC-CeEEEeCCceEEEeeeccC
Q 022660          162 ITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGET-PTIVDTDVGRIGIGICYDI  240 (294)
Q Consensus       162 i~Iv~Gs~~~~~~~~~yNsa~vi~~~G~il~~y~K~~L~~~~~P~~~~f~E~~~f~~G~~-~~v~~~~~grigi~ICyD~  240 (294)
                      +++++| .++++++++||+++++++ |+++..|+|+||++         .|+.+|.+|+. +.+++++++|||++||||.
T Consensus        81 i~i~~g-~~~~~~~~~~n~~~~i~~-g~~~~~y~K~~l~~---------~e~~~~~~G~~~~~v~~~~~~~ig~~IC~D~  149 (262)
T d1j31a_          81 LYIVAG-TAEKSGNYLYNSAVVVGP-RGYIGKYRKIHLFY---------REKVFFEPGDLGFKVFDIGFAKVGVMICFDW  149 (262)
T ss_dssp             CEEEEE-EEEEETTEEEEEEEEEET-TEEEEEEECSSCCT---------THHHHCCCCCSCSCEEECSSCEEEECCGGGG
T ss_pred             ceEEee-eeecccccccccceEEEe-eeEEEEEeeeecCc---------cCceeECCCCCCceEEEeCCceEEEEEehhh
Confidence            999999 568889999999999985 78999999999965         56678999976 7899999999999999999


Q ss_pred             cCcHHHHHHHHCCCeEEEEcCCCCCCCCHHHHHHHHHHHHHHhCCeeEeecc
Q 022660          241 RFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQVLPHSPFV  292 (294)
Q Consensus       241 ~fpe~~r~la~~Gadlil~ps~~~~~~~~~~~~~l~~~RAiEn~~~vv~an~  292 (294)
                      +|||+++.++.+|||+|++|+++...    .|..+.++||+||++||+++|.
T Consensus       150 ~~pe~~~~~~~~ga~lil~p~~~~~~----~~~~~~~~rA~en~~~vv~~n~  197 (262)
T d1j31a_         150 FFPESARTLALKGAEIIAHPANLVMP----YAPRAMPIRALENRVYTITADR  197 (262)
T ss_dssp             GSHHHHHHHHHTTCSEEEEECCCCSS----CHHHHHHHHHHHHTCEEEEECC
T ss_pred             hhhHHHHHHHHhccccccCCcccccc----cchhhhhhhhhcccceEEEEec
Confidence            99999999999999999999987543    4777789999999999999985

>d1f89a_ d.160.1.1 (A:) hypothetical protein yl85 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Carbon-nitrogen hydrolase
superfamily: Carbon-nitrogen hydrolase
family: Nitrilase
domain: hypothetical protein yl85
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.2e-39  Score=291.03  Aligned_cols=214  Identities=50%  Similarity=0.822  Sum_probs=180.2

Q ss_pred             CCCCceEEEEEecccc-ccHHHHHHHHHHHHHHHHHC--CCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHH
Q 022660           78 PPVAKFKVGLCQLSVT-ADKERNIAHARRAIEEAAEK--GAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLS  154 (294)
Q Consensus        78 ~~~~~~rValvQ~~v~-~d~~~n~~~i~~~i~~A~~~--gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~  154 (294)
                      .+.++||||++|+++. +|.+.|++++++++++|+++  |+|||||||++++||...++......++ ...+++.++.++
T Consensus         5 ~m~~~~kia~~Q~~~~~~D~~~N~~~~~~~i~~A~~~~~~a~lvv~PE~~l~gy~~~~~~~~~~~~~-~~~~~~~~~~l~   83 (281)
T d1f89a_           5 ILSQKIKVALVQLSGSSPDKMANLQRAATFIERAMKEQPDTKLVVLPECFNSPYSTDQFRKYSEVIN-PKEPSTSVQFLS   83 (281)
T ss_dssp             SBSSCEEEEEEECCCCCSCHHHHHHHHHHHHHHHHHHCTTEEEEECCTTTTSCSCHHHHHHHTTBCC-SSSCCHHHHHHH
T ss_pred             hhccCceEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCCEEEEcCCcccCCCchhHHHHHHhhhc-ccCCCHHHHHHH
Confidence            4567899999999974 89999999999999998654  8999999999999998765543333222 234578999999


Q ss_pred             HHHHhcCcEEEEeeeeeee--CCeeEEEEEEEccCCcEEEEEeecccCCCCCCCccccccccCccCCCCCeEEEeCCceE
Q 022660          155 EVARLLKITIVGGSIPERS--GDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRI  232 (294)
Q Consensus       155 ~lA~~~~i~Iv~Gs~~~~~--~~~~yNsa~vi~~~G~il~~y~K~~L~~~~~P~~~~f~E~~~f~~G~~~~v~~~~~gri  232 (294)
                      ++|++++++|++|++++.+  ++++||++++++++|+++.+|+|++++++..+....+.|..+|..|....+++++++++
T Consensus        84 ~~A~~~~i~iv~G~~~~~~~~~~~~yNs~~~i~~~G~i~~~~~k~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~  163 (281)
T d1f89a_          84 NLANKFKIILVGGTIPELDPKTDKIYNTSIIFNEDGKLIDKHRKVHLFDVDIPNGISFHESETLSPGEKSTTIDTKYGKF  163 (281)
T ss_dssp             HHHHHSSCEEECCCEEEECTTTCCEEEEEEEECTTSCEEEEEECCCCC----------HHHHSCCCCCCCEEEEETTEEE
T ss_pred             HHhhhcCceeecceeeeeccccCceeeecccccccccccccccccccccccccccccccccceeeeeccccccccccccc
Confidence            9999999999999766544  67899999999999999999999999887766666677888899999999999999999


Q ss_pred             EEeeeccCcCcHHHHHHHHCCCeEEEEcCCCCCCCCHHHHHHHHHHHHHHhCCeeEeecc
Q 022660          233 GIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQVLPHSPFV  292 (294)
Q Consensus       233 gi~ICyD~~fpe~~r~la~~Gadlil~ps~~~~~~~~~~~~~l~~~RAiEn~~~vv~an~  292 (294)
                      |++||||.++|+.+|.++.+|++++++|++++......+|..++++||.||++||+.+|.
T Consensus       164 g~~iC~d~~~p~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv~~n~  223 (281)
T d1f89a_         164 GVGICYDMRFPELAMLSARKGAFAMIYPSAFNTVTGPLHWHLLARSRAVDNQVYVMLCSP  223 (281)
T ss_dssp             EECCGGGGGCHHHHHHHHHTTEEEEEEECCCBTTHHHHHHHHHHHHHHHHHTSEEEEECC
T ss_pred             ccccccccccccchhhhhcccccceeEeeccccccccccccchhhhhcccccccceeeee
Confidence            999999999999999999999999999999877666678888899999999999999985

>d1uf5a_ d.160.1.2 (A:) N-carbamoyl-D-aminoacid amidohydrolase {Agrobacterium sp. [TaxId: 361]}

class: Alpha and beta proteins (a+b)
fold: Carbon-nitrogen hydrolase
superfamily: Carbon-nitrogen hydrolase
family: Carbamilase
domain: N-carbamoyl-D-aminoacid amidohydrolase
species: Agrobacterium sp. [TaxId: 361]

Probab=100.00  E-value=5.3e-37  Score=278.86  Aligned_cols=212  Identities=22%  Similarity=0.258  Sum_probs=167.9

Q ss_pred             CceEEEEEeccc-c--ccHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhh---ccCCCCcHHHHHHH
Q 022660           81 AKFKVGLCQLSV-T--ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDI---DAGGDASPSTAMLS  154 (294)
Q Consensus        81 ~~~rValvQ~~v-~--~d~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~---~~~~~~~~~~~~l~  154 (294)
                      ++||||++|+.+ .  .+.+.|++++.+++++|+++|+|||||||++++||.+.........+   .....+++.++.+.
T Consensus         2 ~~~~ia~~Q~~Pi~~~~~~~~~l~r~~~li~~A~~~gadlvvfPE~~l~Gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (303)
T d1uf5a_           2 RQMILAVGQQGPIARAETREQVVVRLLDMLTKAASRGANFIVFPELALTTFFPRWHFTDEAELDSFYETEMPGPVVRPLF   81 (303)
T ss_dssp             CEEEEEEEEBCCCCTTCCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTSCCGGGSCCCCHHHHHTTSBSSSSCTTTHHHH
T ss_pred             cEEEEEEEccCCcCCCcCHHHHHHHHHHHHHHHHHCCCcEEEcCCCccccCCccccccchhHHhhhhhhhcCCHHHHHHH
Confidence            689999999974 2  58899999999999999999999999999999999764322111111   11223567899999


Q ss_pred             HHHHhcCcEEEEeeeeee---eCCeeEEEEEEEccCCcEEEEEeecccCCCCC--CCc-cccccccCccCCC-CCeEEEe
Q 022660          155 EVARLLKITIVGGSIPER---SGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDI--PGK-ITFIESKSLTAGE-TPTIVDT  227 (294)
Q Consensus       155 ~lA~~~~i~Iv~Gs~~~~---~~~~~yNsa~vi~~~G~il~~y~K~~L~~~~~--P~~-~~f~E~~~f~~G~-~~~v~~~  227 (294)
                      ++|++++++|++|+....   .++++||++++++++|+++.+|+|+||++++.  |.. ....|..+|.+++ ...+|++
T Consensus        82 ~~A~~~~i~i~~G~~~~~~~~~~~~~yNs~~li~~~G~i~~~y~K~~L~~~~e~~~~~~~~~~e~~~~~~~~~~~~~~~~  161 (303)
T d1uf5a_          82 EKAAELGIGFNLGYAELVVEGGVKRRFNTSILVDKSGKIVGKYRKIHLPGHKEYEAYRPFQHLEKRYFEPGDLGFPVYDV  161 (303)
T ss_dssp             HHHHHHTCEEEEEEEEEEEETTEEEEEEEEEEECTTSCEEEEEECCCCCSCSSCCTTCSSCCCHHHHCCCCSSCSCEEEE
T ss_pred             HHHHhcCceEEEEeeeeeeecCCCeeEEEEEeeccccccccccccccCCCCccccccccccccccceecccCCcceeEEe
Confidence            999999999999954322   24679999999999999999999999987641  111 1123445566654 4789999


Q ss_pred             CCceEEEeeeccCcCcHHHHHHHHCCCeEEEEcCCCCCCC---------CHHHHHHHHHHHHHHhCCeeEeecc
Q 022660          228 DVGRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTT---------GPLHWELLQRARATDNQVLPHSPFV  292 (294)
Q Consensus       228 ~~grigi~ICyD~~fpe~~r~la~~Gadlil~ps~~~~~~---------~~~~~~~l~~~RAiEn~~~vv~an~  292 (294)
                      +++|||++||||.+|||+++.++++|||+++++++++...         ...+|....++||+||++||+++|.
T Consensus       162 ~~~rig~~IC~D~~~pe~~~~la~~Ga~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~arA~en~~~vv~~n~  235 (303)
T d1uf5a_         162 DAAKMGMFIANDRRWPEAWRVMGLRGAEIICGGYNTPTHNPPVPQHDHLTSFHHLLSMQAGSYQNGAWSAAAGK  235 (303)
T ss_dssp             TTEEEEECCGGGGGCHHHHHHHHHTTCSEEEEEECCBSCCTTCGGGGGGHHHHHHHHHHHHHHHHTCEEEEEEB
T ss_pred             cCcEEEeeccccchhhHhhhhHhhCCCEEEEEeccccccCCcccccchhhcchhhhhhhhhhhcccceeeeccc
Confidence            9999999999999999999999999999999988764321         1236777789999999999999985

>d1emsa2 d.160.1.1 (A:10-280) NIT-FHIT fusion protein, N-terminal domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Carbon-nitrogen hydrolase
superfamily: Carbon-nitrogen hydrolase
family: Nitrilase
domain: NIT-FHIT fusion protein, N-terminal domain
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.1e-37  Score=279.18  Aligned_cols=209  Identities=35%  Similarity=0.572  Sum_probs=178.6

Q ss_pred             CCCceEEEEEeccccccHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCC-CCCccchhhhhccCCCCcHHHHHHHHHH
Q 022660           79 PVAKFKVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYS-HDSFPVYAEDIDAGGDASPSTAMLSEVA  157 (294)
Q Consensus        79 ~~~~~rValvQ~~v~~d~~~n~~~i~~~i~~A~~~gadLVVfPE~~l~gy~-~~~~~~~~~~~~~~~~~~~~~~~l~~lA  157 (294)
                      +.+++|||++|+++.+|++.|++++.+++++|++.|+|||||||++..++. .....+.+..++     ++.++.++++|
T Consensus         2 ~~~~~rVA~~Q~~~~~d~~~N~~~i~~~i~~A~~~gadlvvfPE~~~~~~~~~~~~~~~a~~~~-----~~~~~~l~~~a   76 (271)
T d1emsa2           2 ATGRHFIAVCQMTSDNDLEKNFQAAKNMIERAGEKKCEMVFLPECFDFIGLNKNEQIDLAMATD-----CEYMEKYRELA   76 (271)
T ss_dssp             CCSEEEEEEECBCCCSCHHHHHHHHHHHHHHHHHTTCSEEEECTTCSCCCSSHHHHHHHHHHHH-----HHHHHHHHHHH
T ss_pred             CCCCeEEEEEeCCCCCCHHHHHHHHHHHHHHHHHCcCeEEECCccccccCCCHHHHHHHHHhhc-----chHHHhhhhhh
Confidence            456799999999988999999999999999999999999999999754443 233333443333     47899999999


Q ss_pred             HhcCcEEEEeeeeeee---CCeeEEEEEEEccCCcEEEEEeecccCCCCCCCccccccccCccCCCC-CeEEEeCCceEE
Q 022660          158 RLLKITIVGGSIPERS---GDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGET-PTIVDTDVGRIG  233 (294)
Q Consensus       158 ~~~~i~Iv~Gs~~~~~---~~~~yNsa~vi~~~G~il~~y~K~~L~~~~~P~~~~f~E~~~f~~G~~-~~v~~~~~grig  233 (294)
                      +++++++++|+.+.+.   ++++||++++++++|+++.+|+|+||++++.+....+.|..++.+|+. ..+++++++++|
T Consensus        77 ~~~~i~v~~G~~~~~~~~~~~~~yNsa~vi~~~g~i~~~~~K~~l~~~~~~~~~~~~e~~~~~~g~~~~~v~~~~~~~~g  156 (271)
T d1emsa2          77 RKHNIWLSLGGLHHKDPSDAAHPWNTHLIIDSDGVTRAEYNKLHLFDLEIPGKVRLMESEFSKAGTEMIPPVDTPIGRLG  156 (271)
T ss_dssp             HHTTCEEEEEEEEEEETTEEEEEEEEEEEECTTSCEEEEEECCCCCEEEETTTEEEEGGGTCCCCCSCCCCEEETTEEEC
T ss_pred             hcccccccccceeeeeecCCCceeEEEEEEeCCceEEEeeeeecccccccccccceeccccccCCccccceeecCCcccc
Confidence            9999999999665553   467999999999999999999999998766555556677888999976 689999999999


Q ss_pred             EeeeccCcCcHHHHHHHHCCCeEEEEcCCCCCCCCHHHHHHHHHHHHHHhCCeeEeecc
Q 022660          234 IGICYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQVLPHSPFV  292 (294)
Q Consensus       234 i~ICyD~~fpe~~r~la~~Gadlil~ps~~~~~~~~~~~~~l~~~RAiEn~~~vv~an~  292 (294)
                      ++||+|.+||++++.++++|+++|++|++++......+|+.+.+++|.++++|++.+|.
T Consensus       157 ~~iC~D~~~~e~~~~~~~~ga~~i~~p~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~n~  215 (271)
T d1emsa2         157 LSICYDVRFPELSLWNRKRGAQLLSFPSAFTLNTGLAHWETLLRARAIENQCYVVAAAQ  215 (271)
T ss_dssp             CCCGGGGGCHHHHHHHHHTTCSEEECCBCCCHHHHHHHHHHHHHHHHHHHTCEEEECBB
T ss_pred             ccccccccccHHHHHHHhhcCcEEEecccccccccchhHHHHHHHHHhhhccccccccc
Confidence            99999999999999999999999999998766555677888899999999999999995

>d1uf5a_ d.160.1.2 (A:) N-carbamoyl-D-aminoacid amidohydrolase {Agrobacterium sp. [TaxId: 361]}

class: Alpha and beta proteins (a+b)
fold: Carbon-nitrogen hydrolase
superfamily: Carbon-nitrogen hydrolase
family: Carbamilase
domain: N-carbamoyl-D-aminoacid amidohydrolase
species: Agrobacterium sp. [TaxId: 361]

Probab=81.62  E-value=3.3  Score=34.19  Aligned_cols=79  Identities=9%  Similarity=-0.023  Sum_probs=42.9

Q ss_pred             HHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCcHHHHHHHHHHHhcCcEEEEeeeeeeeCCe-eEEEEEEEc
Q 022660          107 IEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDR-LYNTCCVFG  185 (294)
Q Consensus       107 i~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~Gs~~~~~~~~-~yNsa~vi~  185 (294)
                      .+.++.+|||+|+.|=.+...............       ......++.-|.+++++++.-.....+++. ++-...+++
T Consensus       180 ~~~la~~Ga~ii~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~arA~en~~~vv~~n~~g~~~~~~~~G~S~I~~  252 (303)
T d1uf5a_         180 WRVMGLRGAEIICGGYNTPTHNPPVPQHDHLTS-------FHHLLSMQAGSYQNGAWSAAAGKAGMEENCMLLGHSCIVA  252 (303)
T ss_dssp             HHHHHHTTCSEEEEEECCBSCCTTCGGGGGGHH-------HHHHHHHHHHHHHHTCEEEEEEBCEEETTEEECCCCEEEC
T ss_pred             hhhHhhCCCEEEEEeccccccCCcccccchhhc-------chhhhhhhhhhhcccceeeeccccccccccccccCcEEEe
Confidence            334567899999987544332221111111110       012233445677899998754333334443 334457899


Q ss_pred             cCCcEEE
Q 022660          186 SDGKLIA  192 (294)
Q Consensus       186 ~~G~il~  192 (294)
                      |+|+++.
T Consensus       253 p~G~vla  259 (303)
T d1uf5a_         253 PTGEIVA  259 (303)
T ss_dssp             TTSCEEE
T ss_pred             CCCCEEE
Confidence            9999874