Citrus Sinensis ID: 022663

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290----
Protein Sequence
MADGMNENEKLNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDELRNSTNLLSVVESWLRSETKLEKKRPVDPPKQVQKTSPFGSSPFMSSRHMAYNR
Secondary Structure (PSIPRED)
cccccccccccccEEEcccEEEcccccccccEEccEEEEccccEEEEEccccccHHHHHHHHHccEEEccccEEEEccccccccccccccccccEEEEEEEccccccccccccccHHHHHHHcccccccHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHcccccEEEEEcccccccHHHHHHHHHHHHHHHHHcccEEEEccccHHHHHHHccEEEEEEccEEEEcccHHHHHHHHcccEEEEEEEccccHHHHHHcccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccEEEEEEEEEEccccccEEEEEcEEEEEcccEEEEEEccccccHHHHHHHHHccccccccEEEEcccccccccEEEEEEHEcccccccHHHHHccccEEccccccHHHHHHcccHHHHHHHHHHHHHHHccccccccHHccccHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHHHHHHHHHHcccEEEEEEccHHHHHHHHcEEEEEcccEEEEEccHHHHHccccccEEEEEEccccccccEEccccEEEccccEEEccccccccccccccEEEcc
Coil and Loop (DISEMBL)
madgmneneklNSIKVCgmqfsyegndkpplfydfnlgispgsrcllvgangsgkTTLLKILAGKHMVGGRDVVQVLNrssfhdtqlvcsgdlsylggswsktvgsageiplqgdfsaehmifgvegsdpvRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDELRNSTNLLSVVESWLRSETklekkrpvdppkqvqktspfgsspfmssrhmaynr
Flexible Loop (DISEMBL)
madgmneneklnSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELdelrnstnllSVVESWLRSetklekkrpvdppkqvqktspfgsspfmssrhmaynr
Low Complexity Region (SEG)
MADGMNENEKLNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDELRNSTNLLSVVESWLRSETKLEKKRPVDPPKQVQKTSPFGSSPFMSSRHMAYNR
Disordered region (IsUnstruct)
*************IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDELRNSTNLLSVVESWL***************************************
Disordered Region (DISOPRED)
**************KVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDELRNSTNLLSVVESWLRS**************************FMSSR*MAYNR
Disordered Region (DISEMBL)
********EKLNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDELRNSTNLLSVVESWLRSE******************SPFGSSPFMSSRHMAYNR
Disordered Region (DISPRO)
*********KLNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDELRNSTNLLSVVESWLRSETKLEKKRPVDPPKQVQKTSPFGSSPFMSSRHMAYNR
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MADGMNENEKLNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYxxxxxxxxxxxxxxxxxxxxxTNLLSVVESWLRSETKLEKKRPVDPPKQVQKTSPFGSSPFMSSRHMAYNR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	294	2.2.26 [Sep-21-2011]
Q3EDJ0	290	ABC transporter I family	yes	no	0.948	0.962	0.787	1e-128
Q9XF19	282	ABC transporter I family	no	no	0.921	0.960	0.780	1e-120
Q9LZ98	328	ABC transporter I family	no	no	0.860	0.771	0.580	2e-82
Q7Z991	280	Uncharacterized ABC trans	yes	no	0.853	0.896	0.434	8e-45
P43569	289	CCR4-associated factor 16	yes	no	0.707	0.719	0.415	4e-41
Q4KC87	354	Fe(3+) ions import ATP-bi	yes	no	0.775	0.644	0.275	5e-13
Q839D4	289	Energy-coupling factor tr	yes	no	0.721	0.733	0.262	5e-13
Q6F9P2	341	Methionine import ATP-bin	yes	no	0.622	0.536	0.298	1e-12
Q38UU0	291	Energy-coupling factor tr	yes	no	0.646	0.652	0.295	2e-12
P36879	308	Uncharacterized ABC trans	N/A	no	0.653	0.623	0.270	1e-11

>sp|Q3EDJ0|AB19I_ARATH ABC transporter I family member 19 OS=Arabidopsis thaliana GN=ABCI19 PE=2 SV=1

 Score =  459 bits (1181), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 223/283 (78%), Positives = 253/283 (89%), Gaps = 4/283 (1%)

Query: 12  NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGR 71
           ++I+V GMQF+YE  D  P+F+DFNL +  GSRCLLVGANGSGKTTLLKILAGKHMVGG+
Sbjct: 12  DAIRVSGMQFAYEVED--PIFFDFNLDLPAGSRCLLVGANGSGKTTLLKILAGKHMVGGK 69

Query: 72  DVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPV 131
           +VVQVL+RS+FHDTQLVCSGDLSYLGGSWSKTVGSAGE+PLQGDFSAEHMIFGVEG+DPV
Sbjct: 70  NVVQVLSRSAFHDTQLVCSGDLSYLGGSWSKTVGSAGEVPLQGDFSAEHMIFGVEGTDPV 129

Query: 132 RRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLD 191
           RRE+LI+LLDI+LQWRMHKVSDGQ+RRVQICMGLLHPFKVLLLDE+TVDLDVVARMDLL+
Sbjct: 130 RREKLIDLLDINLQWRMHKVSDGQKRRVQICMGLLHPFKVLLLDEVTVDLDVVARMDLLE 189

Query: 192 FFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDELRNSTNLLSVV 251
           FFK+EC+QRGATIVYATHIFDGLETWATHLAYIQDGEL R  K+ +++EL+ S NLLSVV
Sbjct: 190 FFKEECDQRGATIVYATHIFDGLETWATHLAYIQDGELNRLSKMTDIEELKTSPNLLSVV 249

Query: 252 ESWLRSETKLEKKRPVDPPKQVQKTSPFGSSPFMSSRHMAYNR 294
           ESWLRSE  ++  +    P    K SPF +SPF SSRHMAY R
Sbjct: 250 ESWLRSE--IKLVKKKKKPVAPWKPSPFDNSPFRSSRHMAYYR 290

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XF19|AB21I_ARATH ABC transporter I family member 21 OS=Arabidopsis thaliana GN=ABCI21 PE=2 SV=1

 Score =  432 bits (1112), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 220/282 (78%), Positives = 247/282 (87%), Gaps = 11/282 (3%)

Query: 13  SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRD 72
           +I+V GMQFSY+  D  P+F+DFNL +  GSRCLLVGANGSGKTTLLKILAGKHMVGG++
Sbjct: 12  AIRVSGMQFSYDVQD--PIFFDFNLDLPAGSRCLLVGANGSGKTTLLKILAGKHMVGGKN 69

Query: 73  VVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVR 132
           VVQVL+RS+FHDT+LVCSGDLSYLGGSWSKT GSAG+IPLQGDFSAEHMIFGVEG DP R
Sbjct: 70  VVQVLDRSAFHDTELVCSGDLSYLGGSWSKTAGSAGDIPLQGDFSAEHMIFGVEGIDPFR 129

Query: 133 RERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDF 192
           RE+LI+LLDI+LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDE+TVDLDVVARMDLL+F
Sbjct: 130 REKLIDLLDINLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEVTVDLDVVARMDLLEF 189

Query: 193 FKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDELRNSTNLLSVVE 252
           FK+ECEQRGATIVYATHIFDGLETWA+HLAYI  GEL+ + KL E+ +L+ S NLLSVVE
Sbjct: 190 FKEECEQRGATIVYATHIFDGLETWASHLAYINGGELKLSAKLDEIKDLKTSPNLLSVVE 249

Query: 253 SWLRSETKLEKKRPVDPPKQVQKTSPFGSSPFMSSRHMAYNR 294
           +WLRSETK+EKK          K  P  +SPFMSSR MAY R
Sbjct: 250 AWLRSETKVEKK---------TKKKPVVTSPFMSSRQMAYYR 282

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LZ98|AB20I_ARATH ABC transporter I family member 20 OS=Arabidopsis thaliana GN=ABCI20 PE=2 SV=1

 Score =  305 bits (782), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 152/262 (58%), Positives = 195/262 (74%), Gaps = 9/262 (3%)

Query: 1   MADGMNENEKLNSIKVCGMQFSYEGND------KPPLFYDFNLGISPGSRCLLVGANGSG 54
           MA    E ++ +++++ G++F+Y G D        PL  DF++ ++   RCLLVG+NG+G
Sbjct: 1   MAVTEEEKKRNSTVEISGLRFTYPGIDGHPPPGSKPLIEDFSITLNSSDRCLLVGSNGAG 60

Query: 55  KTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAG-EIPLQ 113
           KTT+LKIL GKHMV    +V+VL RS+FHDT L  SGDL YLGG W + V  AG E+P+Q
Sbjct: 61  KTTILKILGGKHMVEPH-MVRVLGRSAFHDTGLTSSGDLCYLGGEWRRDVAFAGFEVPIQ 119

Query: 114 GDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLL 173
            D SAE MIFGV G DP RR+ LI++LDID+ WR+HKVSDGQRRRVQICMGLL PFKVLL
Sbjct: 120 MDISAEKMIFGVAGIDPQRRDELIKVLDIDISWRLHKVSDGQRRRVQICMGLLKPFKVLL 179

Query: 174 LDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAE 233
           LDEITVDLDV+AR DLL F + ECE+RGATI+YATHIFDGLE W TH+ Y+ +G+L+ A 
Sbjct: 180 LDEITVDLDVLARADLLKFLRKECEERGATIIYATHIFDGLEDWPTHIVYVANGKLQLAL 239

Query: 234 KLAELDELRNSTNLLSVVESWL 255
            + ++ E  +  +L+  VESWL
Sbjct: 240 PMEKVKET-SKKSLMRTVESWL 260

Arabidopsis thaliana (taxid: 3702)

>sp|Q7Z991|YE31_SCHPO Uncharacterized ABC transporter ATP-binding protein C20G4.01 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC20G4.01 PE=4 SV=2

 Score =  181 bits (458), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 126/290 (43%), Positives = 163/290 (56%), Gaps = 39/290 (13%)

Query: 14  IKVCGMQFSYEGNDKPPLFYD-FNLGISPGSRCLLVGANGSGKTTLLKIL-------AGK 65
           ++V     SY  + K PL  D   L +  GSR LLVGANG+GK+TLLK+L       AG 
Sbjct: 1   MEVTVSNLSYTFSPKQPLSLDHVTLDLPKGSRTLLVGANGAGKSTLLKLLSGKSLAKAGH 60

Query: 66  HMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGV 125
             VGG+D         F ++    S    YLG  W           +  D S   +I  V
Sbjct: 61  ISVGGKD--------PFRES----SSAFVYLGTEW------VNNPVIHRDMSVARLIASV 102

Query: 126 EGSD-PVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVV 184
            G     RR+ LI +LDIDL+WRMH VSDG+RRRVQ+CMGLL PF+VLLLDE+TVDLDV+
Sbjct: 103 GGDKFAERRDFLISILDIDLRWRMHAVSDGERRRVQLCMGLLRPFEVLLLDEVTVDLDVL 162

Query: 185 ARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDEL--R 242
           AR DLL+F ++E E R ATIVYATHIFDGL  W THL ++  G +     +++   L  R
Sbjct: 163 ARADLLNFLQEETEVRNATIVYATHIFDGLAEWPTHLVHLSLGRIVDYGPISKFGALMTR 222

Query: 243 NSTN---LLSVVESWLRSE-----TKLEKKRPVDPPKQVQKTSPFGSSPF 284
           +ST    LL     WL+ +     T+ E+KR       VQ++   G+  F
Sbjct: 223 SSTGNSALLETCLEWLKEDKKNRGTREEEKRST--WDDVQESLKVGTDVF 270

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P43569|CAF16_YEAST CCR4-associated factor 16 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CAF16 PE=1 SV=1

 Score =  168 bits (425), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 96/231 (41%), Positives = 138/231 (59%), Gaps = 23/231 (9%)

Query: 13  SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHM----- 67
           +I+V  + + ++ +  P +  D NL I   +R L+VGANG+GK+TLLK+L+GKH+     
Sbjct: 6   AIEVRNLTYKFKESSDPSVV-DINLQIPWNTRSLVVGANGAGKSTLLKLLSGKHLCLDGK 64

Query: 68  --VGGRDVVQVLNRSSFHDTQLVCSGD----LSYLGGSW---SKTVGSAGEIPLQGDFSA 118
             V G D    L+ +   D + V         +YLG  W   S      G + L      
Sbjct: 65  ILVNGLDPFSPLSMNQVDDDESVEDSTNYQTTTYLGTEWCHMSIINRDIGVLELLKSIGF 124

Query: 119 EHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEIT 178
           +H           R ERL+ +LDID++WRMH++SDGQ+RRVQ+ MGLL P++VLLLDE+T
Sbjct: 125 DHF--------RERGERLVRILDIDVRWRMHRLSDGQKRRVQLAMGLLKPWRVLLLDEVT 176

Query: 179 VDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL 229
           VDLDV+AR  LL+F K E E R  ++VYATHIFDGL  W   + +++ G++
Sbjct: 177 VDLDVIARARLLEFLKWETETRRCSVVYATHIFDGLAKWPNQVYHMKSGKI 227

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q4KC87|FBPC_PSEF5 Fe(3+) ions import ATP-binding protein FbpC OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=fbpC PE=3 SV=1

 Score = 75.1 bits (183), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 71/258 (27%), Positives = 117/258 (45%), Gaps = 30/258 (11%)

Query: 11  LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGG 70
           +N++++  +  S+ G    P   D +L +  GSR  +VG +GSGKTTLL+++AG      
Sbjct: 1   MNALELHAVHKSFGGV---PAVQDISLSMPAGSRTAIVGPSGSGKTTLLRMIAGFEFPDR 57

Query: 71  RDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDF-----SAEHMIFGV 125
             +   LN     D Q           G+        G +P  G        A ++ FG+
Sbjct: 58  GRIS--LNGQVLADAQ-----------GAVPAHQRLIGYVPQDGALFPHLNVAANIGFGL 104

Query: 126 EGSDPVRRERLIELLD-------IDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEIT 178
            G +P R++R+ ELLD       +  +W  H++S GQ++RV +   L    +++LLDE  
Sbjct: 105 TGKNPQRQQRIAELLDMVALDSSLAARWP-HELSGGQQQRVALARALAQRPRLMLLDEPF 163

Query: 179 VDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL 238
             LD   R  +         + G T +  TH      ++A  LA ++ G L +A    EL
Sbjct: 164 SALDTGLRASMRKAVARLLAEAGVTTILVTHDQAEALSFADQLAVMRQGRLVQAGAPLEL 223

Query: 239 -DELRNSTNLLSVVESWL 255
               R++   L + E+ L
Sbjct: 224 YQHPRDAQTALFLGEAVL 241

Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import. Responsible for energy coupling to the transport system.

Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) (taxid: 220664)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 3

EC: 0

>sp|Q839D4|ECFA2_ENTFA Energy-coupling factor transporter ATP-binding protein EcfA 2 OS=Enterococcus faecalis (strain ATCC 700802 / V583) GN=ecfA2 PE=3 SV=2

 Score = 75.1 bits (183), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 110/232 (47%), Gaps = 20/232 (8%)

Query: 14  IKVCGMQFSYEGND--KPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKIL-------AG 64
           I+   + F+Y+ N   +    +D NL I  GS   +VG  GSGK+TLL+ L        G
Sbjct: 3   IRFKQVDFTYQPNTPFEQRALFDINLTIQDGSYTAIVGHTGSGKSTLLQHLNALVKPTKG 62

Query: 65  KHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFG 124
           +  +G R +    +  +    +         +G  +        E  ++ D +     FG
Sbjct: 63  QVTIGERVITPETDNKNLKPIR-------KKVGIVFQFPEAQLFEETVERDIAFGPKNFG 115

Query: 125 VEGSDPVR-RERLIELLDIDLQWRMH---KVSDGQRRRVQICMGLLHPFKVLLLDEITVD 180
           V   +  +  +++++L+ +D ++  H   ++S GQ RRV I   L    +VL+LDE T  
Sbjct: 116 VSDEEAKKLAKKMLDLVGLDEKYLQHSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAG 175

Query: 181 LDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRA 232
           LD   R ++++ F    ++   TIV  TH+ D +  +A H+  ++ G++ RA
Sbjct: 176 LDPKGRKEMMEMFSRLHKEHNMTIVLVTHLMDDVANYADHVIVLEKGQIVRA 227

Part of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.

Enterococcus faecalis (strain ATCC 700802 / V583) (taxid: 226185)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: -

>sp|Q6F9P2|METN2_ACIAD Methionine import ATP-binding protein MetN 2 OS=Acinetobacter sp. (strain ADP1) GN=metN2 PE=3 SV=1

 Score = 73.9 bits (180), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/208 (29%), Positives = 101/208 (48%), Gaps = 25/208 (12%)

Query: 35  FNLGISPGSRCLLVGANGSGKTTLLKIL-------AGKHMVGGRDVVQVLNRSSFHDTQL 87
            NL I  GS   ++G +G+GK+TL++++        G+ ++  +D    LN  S    + 
Sbjct: 24  INLDIPAGSIFGIIGYSGAGKSTLIRLINLLERPTHGQIIINQKDFT-ALNAQSLRQERA 82

Query: 88  VCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRE-RLIELLD-IDLQ 145
                  +     +KTV +  E+PL+           + G   + RE RL+ELLD IDL 
Sbjct: 83  NIGMIFQHFNLLQTKTVAANIEMPLK-----------LLGYSKIEREKRLMELLDFIDLT 131

Query: 146 WRMH----KVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRG 201
            +      ++S GQ++RV I   L +  K+LL DE T  LD      +L   K   +++G
Sbjct: 132 HKKDAFPDELSGGQKQRVGIARALANHPKILLCDEATSALDPQTTKSVLALLKKINKEQG 191

Query: 202 ATIVYATHIFDGLETWATHLAYIQDGEL 229
            TIV  TH  D +E+   H+A ++ G +
Sbjct: 192 ITIVMVTHEMDVIESICDHVAVMESGHV 219

Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.

Acinetobacter sp. (strain ADP1) (taxid: 62977)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: -

>sp|Q38UU0|ECFA1_LACSS Energy-coupling factor transporter ATP-binding protein EcfA 1 OS=Lactobacillus sakei subsp. sakei (strain 23K) GN=ecfA1 PE=3 SV=1

 Score = 73.6 bits (179), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 102/210 (48%), Gaps = 20/210 (9%)

Query: 35  FNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLS 94
            NL I  GS   L+G  GSGK+TLL+ L    +     VVQ+  R    +T    + +L 
Sbjct: 26  INLTIESGSYTALIGHTGSGKSTLLQHL-NALLKPTEGVVQIGERQITPETN---NKNLK 81

Query: 95  YLGGSWSKTVGSAGEIP--------LQGDFSAEHMIFGVEGSDPVRRER-LIELLDID-- 143
            +     + VG   + P        +Q D +     FGV  ++ + R + ++EL+ +   
Sbjct: 82  VI----RQKVGMVFQFPESQLFEATVQKDIAFGPQNFGVPEAEALERAKAMVELVGLPEA 137

Query: 144 -LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGA 202
            L+     +S GQ RRV I   L    +VL+LDE T  LD V R +++  F+    ++G 
Sbjct: 138 VLEQSPFDLSGGQMRRVAIAGVLAMQPEVLILDEPTAGLDPVGRREMMGLFEKLHREQGM 197

Query: 203 TIVYATHIFDGLETWATHLAYIQDGELRRA 232
           TIV  TH  D +  +A H+  +++G + ++
Sbjct: 198 TIVMVTHQMDDVANYADHVVVLENGGIAKS 227

Part of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.

Lactobacillus sakei subsp. sakei (strain 23K) (taxid: 314315)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: -

>sp|P36879|YADG_ECOLI Uncharacterized ABC transporter ATP-binding protein YadG OS=Escherichia coli (strain K12) GN=yadG PE=3 SV=1

 Score = 70.5 bits (171), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/237 (27%), Positives = 110/237 (46%), Gaps = 45/237 (18%)

Query: 35  FNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLS 94
            +L +  G    L+G NG+GK+T + I++            ++N++S         G +S
Sbjct: 24  IDLQVEAGDFYALLGPNGAGKSTTIGIISS-----------LVNKTS---------GRVS 63

Query: 95  YLGGSWSKTVGSA----GEIPLQGDFSAEHMI----------FGVEGSDP-VRRERLIEL 139
             G    K V +A    G +P + +F+    +          +GVE  +  +R E+ ++ 
Sbjct: 64  VFGYDLEKDVVNAKRQLGLVPQEFNFNPFETVQQIVVNQAGYYGVERKEAYIRSEKYLKQ 123

Query: 140 LDIDLQW-----RMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFK 194
           LD+   W     R   +S G +RR+ I   L+H  K+L+LDE T  +D+  R  +  F K
Sbjct: 124 LDL---WGKRNERARMLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWGFLK 180

Query: 195 DECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKL-AELDELRNSTNLLSV 250
           D    +G TI+  TH  +  E    ++  IQ GEL     + A L +L++ T +L +
Sbjct: 181 D-LNDKGTTIILTTHYLEEAEMLCRNIGIIQHGELVENTSMKALLAKLKSETFILDL 236

Escherichia coli (strain K12) (taxid: 83333)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	294
224066231	274	ABC transporter family protein [Populus	0.931	1.0	0.869	1e-141
224082840	274	ABC transporter family protein [Populus	0.931	1.0	0.865	1e-140
225438087	291	PREDICTED: ABC transporter I family memb	0.948	0.958	0.833	1e-137
330541520	287	ABC transporter family protein [Camellia	0.972	0.996	0.829	1e-137
356548069	296	PREDICTED: ABC transporter I family memb	0.952	0.945	0.819	1e-134
255637824	283	unknown [Glycine max]	0.952	0.989	0.815	1e-132
388491094	287	unknown [Lotus japonicus]	0.976	1.0	0.789	1e-131
357137521	294	PREDICTED: ABC transporter I family memb	0.989	0.989	0.757	1e-130
115449449	292	Os02g0810300 [Oryza sativa Japonica Grou	0.993	1.0	0.755	1e-129
125541564	292	hypothetical protein OsI_09384 [Oryza sa	0.993	1.0	0.755	1e-128

>gi|224066231|ref|XP_002302037.1| ABC transporter family protein [Populus trichocarpa] gi|222843763|gb|EEE81310.1| ABC transporter family protein [Populus trichocarpa]

 Score =  506 bits (1302), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 240/276 (86%), Positives = 260/276 (94%), Gaps = 2/276 (0%)

Query: 19  MQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLN 78
           MQF+Y G  + PLFYDFNL ISPGSRCLLVGANGSGKTTLLKI+AGKHMVGG+DVV+V+N
Sbjct: 1   MQFAYAG--QHPLFYDFNLNISPGSRCLLVGANGSGKTTLLKIMAGKHMVGGKDVVRVIN 58

Query: 79  RSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIE 138
            S+FHDTQLVCSGDL+YLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEG+DPVRRE+LI+
Sbjct: 59  GSAFHDTQLVCSGDLAYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGTDPVRREKLID 118

Query: 139 LLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECE 198
           LLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDE+TVDLDVVARMDLL+FFK+EC+
Sbjct: 119 LLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEVTVDLDVVARMDLLEFFKEECD 178

Query: 199 QRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDELRNSTNLLSVVESWLRSE 258
           QRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKL E+ EL++S NLLSVVESWLR E
Sbjct: 179 QRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLTEVHELKSSANLLSVVESWLRHE 238

Query: 259 TKLEKKRPVDPPKQVQKTSPFGSSPFMSSRHMAYNR 294
           TK EKK+P +PP Q QKTSP GSSPFMSSRHMAY R
Sbjct: 239 TKSEKKKPTNPPAQNQKTSPLGSSPFMSSRHMAYYR 274

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082840|ref|XP_002306861.1| ABC transporter family protein [Populus trichocarpa] gi|222856310|gb|EEE93857.1| ABC transporter family protein [Populus trichocarpa]

 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 239/276 (86%), Positives = 259/276 (93%), Gaps = 2/276 (0%)

Query: 19  MQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLN 78
           MQF+Y G    PLFY+FNL ISPGSRCLLVGANGSGKTTLLKI+AGKHMVGGRDVV+V+N
Sbjct: 1   MQFAYPGQH--PLFYEFNLNISPGSRCLLVGANGSGKTTLLKIMAGKHMVGGRDVVRVIN 58

Query: 79  RSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIE 138
            S+FHDTQLVCSGDL+YLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEG+DPVRRE+LIE
Sbjct: 59  GSAFHDTQLVCSGDLAYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGTDPVRREKLIE 118

Query: 139 LLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECE 198
           LLDIDL+WRMHKVSDGQRRRVQICMGLLHPFKVLLLDE+TVDLDVVARMDLL+FFK+EC+
Sbjct: 119 LLDIDLKWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEVTVDLDVVARMDLLEFFKEECD 178

Query: 199 QRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDELRNSTNLLSVVESWLRSE 258
           QRGATIVYATHIFDGLETWATHLAYIQDGEL+R +KL E+ EL+NS  LLSVVESWLRSE
Sbjct: 179 QRGATIVYATHIFDGLETWATHLAYIQDGELKRVKKLTEVHELKNSATLLSVVESWLRSE 238

Query: 259 TKLEKKRPVDPPKQVQKTSPFGSSPFMSSRHMAYNR 294
           TK EKK+P +PP Q QKTSPFGSSPFMSSRHMAY R
Sbjct: 239 TKNEKKKPTNPPAQNQKTSPFGSSPFMSSRHMAYYR 274

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225438087|ref|XP_002276857.1| PREDICTED: ABC transporter I family member 19 [Vitis vinifera] gi|297744168|emb|CBI37138.3| unnamed protein product [Vitis vinifera]

 Score =  494 bits (1273), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 235/282 (83%), Positives = 263/282 (93%), Gaps = 3/282 (1%)

Query: 14  IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDV 73
           IKV G+QF+YEG  +PPLF DFNL ISPGSRCLLVGANGSGKTTLL+ILAGKHMVGGRDV
Sbjct: 12  IKVNGLQFAYEG--QPPLFLDFNLQISPGSRCLLVGANGSGKTTLLRILAGKHMVGGRDV 69

Query: 74  VQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRR 133
           VQVLN S+FHDT LVCSGDLSYLGGSWSK +GSAGE+PLQGDFSAEHMIFGVEG +PVRR
Sbjct: 70  VQVLNCSAFHDTHLVCSGDLSYLGGSWSKNIGSAGEVPLQGDFSAEHMIFGVEGINPVRR 129

Query: 134 ERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFF 193
           ++L++LLDIDLQWRMHKVSDGQRRRVQICMGLLHPF+VLLLDE+TVDLDVVARMDLL+FF
Sbjct: 130 DKLVDLLDIDLQWRMHKVSDGQRRRVQICMGLLHPFQVLLLDEVTVDLDVVARMDLLEFF 189

Query: 194 KDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDELRNSTNLLSVVES 253
           K+EC+QRGATIVYATHIFDGLETWAT LAY+Q+G+LR+ EKL+ELDEL+ S NLLSVVES
Sbjct: 190 KEECDQRGATIVYATHIFDGLETWATDLAYVQEGDLRKIEKLSELDELKTSANLLSVVES 249

Query: 254 WLRSETKLEKKRPVDPPKQVQKT-SPFGSSPFMSSRHMAYNR 294
           WLRSETK EKK+P++PP Q+Q+T SPF SSPF SSRHMAY R
Sbjct: 250 WLRSETKCEKKKPINPPAQIQRTPSPFDSSPFRSSRHMAYYR 291

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|330541520|gb|AEC32109.1| ABC transporter family protein [Camellia sinensis]

 Score =  492 bits (1267), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 239/288 (82%), Positives = 259/288 (89%), Gaps = 2/288 (0%)

Query: 7   ENEKLNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKH 66
           E +  +SI+V GMQF Y+G  + P+F DF L I PGSRCLLVGANGSGKTTLLKILAGKH
Sbjct: 2   EEKNWSSIEVSGMQFGYDG--QSPVFIDFTLKILPGSRCLLVGANGSGKTTLLKILAGKH 59

Query: 67  MVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVE 126
           MVGGRDVV+VLN S+FHDT LVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVE
Sbjct: 60  MVGGRDVVRVLNCSAFHDTHLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVE 119

Query: 127 GSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVAR 186
           G DPVRRE+LIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPF+VLLLDE+TVDLDVVAR
Sbjct: 120 GVDPVRREKLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFQVLLLDEVTVDLDVVAR 179

Query: 187 MDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDELRNSTN 246
           +DLLDFFK+ECEQRGATIVYATHIFDGLETWAT LAYI  GEL+R +KL+EL EL+NS N
Sbjct: 180 LDLLDFFKEECEQRGATIVYATHIFDGLETWATDLAYIHAGELKRTDKLSELGELKNSAN 239

Query: 247 LLSVVESWLRSETKLEKKRPVDPPKQVQKTSPFGSSPFMSSRHMAYNR 294
           LLSVVESWLRSET  EKK+P +PP + QKTSPF SSPF SSRHMAY R
Sbjct: 240 LLSVVESWLRSETNTEKKKPTNPPVENQKTSPFDSSPFRSSRHMAYYR 287

Source: Camellia sinensis

Species: Camellia sinensis

Genus: Camellia

Family: Theaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548069|ref|XP_003542426.1| PREDICTED: ABC transporter I family member 19-like [Glycine max]

 Score =  482 bits (1240), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 236/288 (81%), Positives = 258/288 (89%), Gaps = 8/288 (2%)

Query: 7   ENEKLNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKH 66
           ENE    I+V GMQFSY+   +PPLF DFNL +SPGSRCLLVGANGSGKTTLLKILAGKH
Sbjct: 17  ENEDSCGIRVTGMQFSYDVQ-QPPLFLDFNLNVSPGSRCLLVGANGSGKTTLLKILAGKH 75

Query: 67  MVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVE 126
           MVGGRDVV+VL+ S+FHDTQLVCSGDL+YLGGSWSK VGSAGEIPLQGDFSAEHMIFGVE
Sbjct: 76  MVGGRDVVRVLSGSAFHDTQLVCSGDLAYLGGSWSKNVGSAGEIPLQGDFSAEHMIFGVE 135

Query: 127 GSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVAR 186
           G+DP RR++LIELLDIDLQWRMHKVSDGQRRRVQIC+GLLHP+KVLLLDE+TVDLDVV R
Sbjct: 136 GADPERRDKLIELLDIDLQWRMHKVSDGQRRRVQICLGLLHPYKVLLLDEVTVDLDVVTR 195

Query: 187 MDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDELRNSTN 246
           MDLLDFFK+ECEQR A IVYATHIFDGLETWATHLAYIQDGELRRAEK++ + EL++STN
Sbjct: 196 MDLLDFFKEECEQREAIIVYATHIFDGLETWATHLAYIQDGELRRAEKISNVKELKSSTN 255

Query: 247 LLSVVESWLRSETKLEKKRPVDPPKQVQKTSPFGSSPFMSSRHMAYNR 294
           LLSVVE+WLR+ETKLEKK P      VQKTS   SSPF SSRHMAY R
Sbjct: 256 LLSVVEAWLRAETKLEKKNP------VQKTS-VASSPFFSSRHMAYYR 296

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255637824|gb|ACU19232.1| unknown [Glycine max]

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 235/288 (81%), Positives = 257/288 (89%), Gaps = 8/288 (2%)

Query: 7   ENEKLNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKH 66
           ENE    I+V GMQFSY+   +PPLF DFNL +SPGSRCLLVGANGSGKTTLLKILAGKH
Sbjct: 4   ENEDSCGIRVTGMQFSYDVQ-QPPLFLDFNLNVSPGSRCLLVGANGSGKTTLLKILAGKH 62

Query: 67  MVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVE 126
           MVGGRDVV+VL+ S+FHDTQLVCSGDL+YLGGSWSK VGSAGEIPLQGD SAEHMIFGVE
Sbjct: 63  MVGGRDVVRVLSGSAFHDTQLVCSGDLAYLGGSWSKNVGSAGEIPLQGDSSAEHMIFGVE 122

Query: 127 GSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVAR 186
           G+DP RR++LIELLDIDLQWRMHKVSDGQRRRVQIC+GLLHP+KVLLLDE+TVDLDVV R
Sbjct: 123 GADPERRDKLIELLDIDLQWRMHKVSDGQRRRVQICLGLLHPYKVLLLDEVTVDLDVVTR 182

Query: 187 MDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDELRNSTN 246
           MDLLDFFK+ECEQR A IVYATHIFDGLETWATHLAYIQDGELRRAEK++ + EL++STN
Sbjct: 183 MDLLDFFKEECEQREAIIVYATHIFDGLETWATHLAYIQDGELRRAEKISNVKELKSSTN 242

Query: 247 LLSVVESWLRSETKLEKKRPVDPPKQVQKTSPFGSSPFMSSRHMAYNR 294
           LLSVVE+WLR+ETKLEKK P      VQKTS   SSPF SSRHMAY R
Sbjct: 243 LLSVVEAWLRAETKLEKKNP------VQKTS-VASSPFFSSRHMAYYR 283

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388491094|gb|AFK33613.1| unknown [Lotus japonicus]

 Score =  472 bits (1214), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 232/294 (78%), Positives = 259/294 (88%), Gaps = 7/294 (2%)

Query: 1   MADGMNENEKLNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLK 60
           MA   +E      I+V GMQF+Y G  +PPLF DF+L +SPGSRCLL+GANGSGKTTLLK
Sbjct: 1   MAIQDSERSGGGGIRVQGMQFTYPGQ-QPPLFLDFHLDVSPGSRCLLLGANGSGKTTLLK 59

Query: 61  ILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEH 120
           IL GKHMVGGRDVV+VLN S+FHDTQLVCSGDLSYLGGSWSKT+G AGEIPLQGDFSAEH
Sbjct: 60  ILTGKHMVGGRDVVRVLNGSAFHDTQLVCSGDLSYLGGSWSKTIGCAGEIPLQGDFSAEH 119

Query: 121 MIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVD 180
           MIFGVEG+DP RR+RLIELLDIDLQWRMHKVSDGQRRRVQIC+GLLHP+K LLLDE+TVD
Sbjct: 120 MIFGVEGADPDRRDRLIELLDIDLQWRMHKVSDGQRRRVQICLGLLHPYKALLLDEVTVD 179

Query: 181 LDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDE 240
           LDVV RMDLLDFFK+ECEQR ATIVYATHIFDGLETWATHLAYIQ+GEL+R EK+++++E
Sbjct: 180 LDVVTRMDLLDFFKEECEQREATIVYATHIFDGLETWATHLAYIQEGELKRTEKISDVNE 239

Query: 241 LRNSTNLLSVVESWLRSETKLEKKRPVDPPKQVQKTSPFGSSPFMSSRHMAYNR 294
           L++S NLLSVVESWLR+ETKLEKK   +P   VQKTS   SSPF SSRHMAY R
Sbjct: 240 LKSSANLLSVVESWLRAETKLEKK---NPTSNVQKTS---SSPFFSSRHMAYYR 287

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357137521|ref|XP_003570349.1| PREDICTED: ABC transporter I family member 19-like [Brachypodium distachyon]

 Score =  469 bits (1207), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 222/293 (75%), Positives = 259/293 (88%), Gaps = 2/293 (0%)

Query: 2   ADGMNENEKLNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKI 61
            +G+ E  + + I+V  +QF Y+G  + PLF  FNL ++PGSRCLLVGANGSGKTTLLKI
Sbjct: 4   GEGVEEGWRKSGIEVSTLQFGYDG--QAPLFARFNLRVAPGSRCLLVGANGSGKTTLLKI 61

Query: 62  LAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHM 121
           LAGKHMVGGRDVV+VLN S+FHDTQ VCSGDLSYLGGSWS+T+GSAG++PLQGDFSAEHM
Sbjct: 62  LAGKHMVGGRDVVRVLNGSAFHDTQFVCSGDLSYLGGSWSRTIGSAGDVPLQGDFSAEHM 121

Query: 122 IFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDL 181
           IFGV+G DPVRRE+LI+LLDIDLQWRMHKVSDGQRRRVQICMGLLHP+KVLLLDEITVDL
Sbjct: 122 IFGVDGVDPVRREKLIDLLDIDLQWRMHKVSDGQRRRVQICMGLLHPYKVLLLDEITVDL 181

Query: 182 DVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDEL 241
           DVV RMDLLDFFK+ECEQR ATIVYATHIFDGLETWAT +AYIQ+GELR++ K ++++EL
Sbjct: 182 DVVTRMDLLDFFKEECEQREATIVYATHIFDGLETWATDIAYIQEGELRKSAKYSDIEEL 241

Query: 242 RNSTNLLSVVESWLRSETKLEKKRPVDPPKQVQKTSPFGSSPFMSSRHMAYNR 294
           +N+ NLLSVVESWL+SETKL KK P+    Q +++SPF +SPF SSRHMAY R
Sbjct: 242 KNAKNLLSVVESWLKSETKLPKKEPIRAESQPRRSSPFDASPFRSSRHMAYYR 294

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115449449|ref|NP_001048469.1| Os02g0810300 [Oryza sativa Japonica Group] gi|47847809|dbj|BAD21584.1| putative ATP-dependent transporter [Oryza sativa Japonica Group] gi|113538000|dbj|BAF10383.1| Os02g0810300 [Oryza sativa Japonica Group] gi|125584098|gb|EAZ25029.1| hypothetical protein OsJ_08816 [Oryza sativa Japonica Group] gi|215765275|dbj|BAG86972.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  466 bits (1200), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 222/294 (75%), Positives = 260/294 (88%), Gaps = 2/294 (0%)

Query: 1   MADGMNENEKLNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLK 60
           MA G +E  + + I+V  +QF Y+G  +PPLF  FNL I+PGSRCLL+GANGSGKTTLLK
Sbjct: 1   MAGGEDEGWRRSGIEVSALQFDYDG--QPPLFARFNLRIAPGSRCLLIGANGSGKTTLLK 58

Query: 61  ILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEH 120
           ILAGKHMVGGRDVV+VLN S+FHDTQLVC+GDLSYLGGSWS+ +GSAG++PLQGDFSAEH
Sbjct: 59  ILAGKHMVGGRDVVRVLNGSAFHDTQLVCNGDLSYLGGSWSRAIGSAGDVPLQGDFSAEH 118

Query: 121 MIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVD 180
           MIFGV+G DPVRRE+L++LLDIDLQWRMHKVSDGQRRRVQICMGLLHP+KVLLLDEITVD
Sbjct: 119 MIFGVDGVDPVRREKLVDLLDIDLQWRMHKVSDGQRRRVQICMGLLHPYKVLLLDEITVD 178

Query: 181 LDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDE 240
           LDVV RMDLLDFFK+ECEQR ATIVYATHIFDGLE+WAT +AYIQ+GELR++ K ++++E
Sbjct: 179 LDVVTRMDLLDFFKEECEQREATIVYATHIFDGLESWATDIAYIQEGELRKSAKYSDVEE 238

Query: 241 LRNSTNLLSVVESWLRSETKLEKKRPVDPPKQVQKTSPFGSSPFMSSRHMAYNR 294
           L+++ NLLSVVESWLRSETKL KK    P  Q +++SPF +SPF SSRHMAY R
Sbjct: 239 LKSAKNLLSVVESWLRSETKLPKKEHPRPETQPRRSSPFDASPFRSSRHMAYYR 292

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125541564|gb|EAY87959.1| hypothetical protein OsI_09384 [Oryza sativa Indica Group]

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 222/294 (75%), Positives = 259/294 (88%), Gaps = 2/294 (0%)

Query: 1   MADGMNENEKLNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLK 60
           MA G +E  + + I+V  +QF Y+G  +PPLF  FNL I+PGSRCLL+GANGSGKTTLLK
Sbjct: 1   MAVGEDEGWRRSGIEVSALQFDYDG--QPPLFARFNLRIAPGSRCLLIGANGSGKTTLLK 58

Query: 61  ILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEH 120
           ILAGKHMVGGRDVV+VLN S+FHDTQLVC+GDLSYLGGSWS+ +GSAG++PLQGDFSAEH
Sbjct: 59  ILAGKHMVGGRDVVRVLNGSAFHDTQLVCNGDLSYLGGSWSRAIGSAGDVPLQGDFSAEH 118

Query: 121 MIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVD 180
           MIFGV+G DPVRRE+L++LLDIDLQWRMHKVSDGQRRRVQICMGLLHP+KVLLLDEITVD
Sbjct: 119 MIFGVDGVDPVRREKLVDLLDIDLQWRMHKVSDGQRRRVQICMGLLHPYKVLLLDEITVD 178

Query: 181 LDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDE 240
           LDVV RMDLLDFFK+ECEQR ATIVYATHIFDGLE+WAT +AYIQ+GELR++ K ++++E
Sbjct: 179 LDVVTRMDLLDFFKEECEQREATIVYATHIFDGLESWATDIAYIQEGELRKSAKYSDVEE 238

Query: 241 LRNSTNLLSVVESWLRSETKLEKKRPVDPPKQVQKTSPFGSSPFMSSRHMAYNR 294
           L+++ NLLSVVESWLRSETKL KK    P  Q + +SPF +SPF SSRHMAY R
Sbjct: 239 LKSAKNLLSVVESWLRSETKLPKKEHPRPETQPRHSSPFDASPFRSSRHMAYYR 292

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	294
TAIR|locus:505006098	290	ABCI19 "ATP-binding cassette I	0.942	0.955	0.803	3.6e-121
TAIR|locus:2167644	282	ABCI21 "ATP-binding cassette A	0.921	0.960	0.780	1.3e-114
POMBASE|SPAC20G4.01	280	caf16 "CCR4-Not complex subuni	0.802	0.842	0.452	6.9e-47
ASPGD|ASPL0000006229	274	AN6512 [Emericella nidulans (t	0.799	0.857	0.430	1.2e-44
UNIPROTKB|G4N1E4	290	MGG_09520 "CCR4-Not complex su	0.897	0.910	0.381	3.6e-41
SGD|S000001866	289	CAF16 "Component of the CCR4-N	0.710	0.723	0.417	4.8e-39
CGD|CAL0004927	320	CAF16 [Candida albicans (taxid	0.744	0.684	0.411	1.3e-36
UNIPROTKB|Q59QD0	320	CAF16 "Potential CCR4-NOT comp	0.744	0.684	0.411	1.3e-36
GENEDB_PFALCIPARUM|PF14_0321	257	PF14_0321 "ABC transporter, pu	0.826	0.945	0.310	7.9e-30
TIGR_CMR|CPS_1893	251	CPS_1893 "ABC transporter, ATP	0.812	0.952	0.272	1.1e-16

TAIR|locus:505006098 ABCI19 "ATP-binding cassette I19" [Arabidopsis thaliana (taxid:3702)]

 Score = 1192 (424.7 bits), Expect = 3.6e-121, P = 3.6e-121
 Identities = 229/285 (80%), Positives = 258/285 (90%)

Query:    12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGR 71
             ++I+V GMQF+YE  D  P+F+DFNL +  GSRCLLVGANGSGKTTLLKILAGKHMVGG+
Sbjct:    12 DAIRVSGMQFAYEVED--PIFFDFNLDLPAGSRCLLVGANGSGKTTLLKILAGKHMVGGK 69

Query:    72 DVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPV 131
             +VVQVL+RS+FHDTQLVCSGDLSYLGGSWSKTVGSAGE+PLQGDFSAEHMIFGVEG+DPV
Sbjct:    70 NVVQVLSRSAFHDTQLVCSGDLSYLGGSWSKTVGSAGEVPLQGDFSAEHMIFGVEGTDPV 129

Query:   132 RRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLD 191
             RRE+LI+LLDI+LQWRMHKVSDGQ+RRVQICMGLLHPFKVLLLDE+TVDLDVVARMDLL+
Sbjct:   130 RREKLIDLLDINLQWRMHKVSDGQKRRVQICMGLLHPFKVLLLDEVTVDLDVVARMDLLE 189

Query:   192 FFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDELRNSTNLLSVV 251
             FFK+EC+QRGATIVYATHIFDGLETWATHLAYIQDGEL R  K+ +++EL+ S NLLSVV
Sbjct:   190 FFKEECDQRGATIVYATHIFDGLETWATHLAYIQDGELNRLSKMTDIEELKTSPNLLSVV 249

Query:   252 ESWLRSETKL--EKKRPVDPPKQVQKTSPFGSSPFMSSRHMAYNR 294
             ESWLRSE KL  +KK+PV P     K SPF +SPF SSRHMAY R
Sbjct:   250 ESWLRSEIKLVKKKKKPVAP----WKPSPFDNSPFRSSRHMAYYR 290

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

TAIR|locus:2167644 ABCI21 "ATP-binding cassette A21" [Arabidopsis thaliana (taxid:3702)]

 Score = 1130 (402.8 bits), Expect = 1.3e-114, P = 1.3e-114
 Identities = 220/282 (78%), Positives = 247/282 (87%)

Query:    13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRD 72
             +I+V GMQFSY+  D  P+F+DFNL +  GSRCLLVGANGSGKTTLLKILAGKHMVGG++
Sbjct:    12 AIRVSGMQFSYDVQD--PIFFDFNLDLPAGSRCLLVGANGSGKTTLLKILAGKHMVGGKN 69

Query:    73 VVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVR 132
             VVQVL+RS+FHDT+LVCSGDLSYLGGSWSKT GSAG+IPLQGDFSAEHMIFGVEG DP R
Sbjct:    70 VVQVLDRSAFHDTELVCSGDLSYLGGSWSKTAGSAGDIPLQGDFSAEHMIFGVEGIDPFR 129

Query:   133 RERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDF 192
             RE+LI+LLDI+LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDE+TVDLDVVARMDLL+F
Sbjct:   130 REKLIDLLDINLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEVTVDLDVVARMDLLEF 189

Query:   193 FKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDELRNSTNLLSVVE 252
             FK+ECEQRGATIVYATHIFDGLETWA+HLAYI  GEL+ + KL E+ +L+ S NLLSVVE
Sbjct:   190 FKEECEQRGATIVYATHIFDGLETWASHLAYINGGELKLSAKLDEIKDLKTSPNLLSVVE 249

Query:   253 SWLRSETKLEKKRPVDPPKQVQKTSPFGSSPFMSSRHMAYNR 294
             +WLRSETK+EKK          K  P  +SPFMSSR MAY R
Sbjct:   250 AWLRSETKVEKKT---------KKKPVVTSPFMSSRQMAYYR 282

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005215 "transporter activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0010114 "response to red light" evidence=IEP

GO:0010218 "response to far red light" evidence=IEP

GO:0009718 "anthocyanin-containing compound biosynthetic process" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009813 "flavonoid biosynthetic process" evidence=RCA

GO:0010224 "response to UV-B" evidence=RCA

POMBASE|SPAC20G4.01 caf16 "CCR4-Not complex subunit Caf16 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 491 (177.9 bits), Expect = 6.9e-47, P = 6.9e-47
 Identities = 115/254 (45%), Positives = 154/254 (60%)

Query:    14 IKVCGMQFSYEGNDKPPLFYDF-NLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRD 72
             ++V     SY  + K PL  D   L +  GSR LLVGANG+GK+TLLK+L+GK +     
Sbjct:     1 MEVTVSNLSYTFSPKQPLSLDHVTLDLPKGSRTLLVGANGAGKSTLLKLLSGKSLAKAGH 60

Query:    73 VVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSD-PV 131
             +  V  +  F ++    S    YLG  W           +  D S   +I  V G     
Sbjct:    61 I-SVGGKDPFRES----SSAFVYLGTEW------VNNPVIHRDMSVARLIASVGGDKFAE 109

Query:   132 RRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLD 191
             RR+ LI +LDIDL+WRMH VSDG+RRRVQ+CMGLL PF+VLLLDE+TVDLDV+AR DLL+
Sbjct:   110 RRDFLISILDIDLRWRMHAVSDGERRRVQLCMGLLRPFEVLLLDEVTVDLDVLARADLLN 169

Query:   192 FFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDEL--RNSTNLLS 249
             F ++E E R ATIVYATHIFDGL  W THL ++  G +     +++   L  R+ST   +
Sbjct:   170 FLQEETEVRNATIVYATHIFDGLAEWPTHLVHLSLGRIVDYGPISKFGALMTRSSTGNSA 229

Query:   250 VVES---WLRSETK 260
             ++E+   WL+ + K
Sbjct:   230 LLETCLEWLKEDKK 243

GO:0005524 "ATP binding" evidence=ISM

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006354 "DNA-dependent transcription, elongation" evidence=IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISO

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IC

GO:0006368 "transcription elongation from RNA polymerase II promoter" evidence=IC

GO:0006402 "mRNA catabolic process" evidence=IC

GO:0006810 "transport" evidence=IEA

GO:0016887 "ATPase activity" evidence=ISO

GO:0030014 "CCR4-NOT complex" evidence=ISO

GO:0030015 "CCR4-NOT core complex" evidence=NAS

ASPGD|ASPL0000006229 AN6512 [Emericella nidulans (taxid:162425)]

 Score = 470 (170.5 bits), Expect = 1.2e-44, P = 1.2e-44
 Identities = 108/251 (43%), Positives = 151/251 (60%)

Query:    22 SYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSS 81
             SY+  D      D  LG+  GSR LL+GANG+GKTTLL++L+GK +    + + + N+  
Sbjct:    13 SYKFPDGSSGLTDVTLGLPAGSRTLLIGANGAGKTTLLRLLSGKRLAPS-NTISIANKDP 71

Query:    82 FHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSD-PVRRERLIELL 140
             F +      G ++YLG  W   + S     ++ D     ++  V G+  P RR+ L+E+L
Sbjct:    72 FKEG---LEG-VTYLGVEW--VLNSI----VRTDIDVPTLLASVGGNAYPERRDELVEIL 121

Query:   141 DIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQR 200
             DIDL+WRMH VSDG+RRRVQ+ MGLL P++VLLLDEITVDLD+++R + L F K E E R
Sbjct:   122 DIDLRWRMHAVSDGERRRVQLAMGLLRPWQVLLLDEITVDLDLLSRSNFLSFLKRETETR 181

Query:   201 GATIVYATHIFDGLETWATHLAYIQDGELRR---AEKLAE-LDELRNSTNLLSVVESWLR 256
               TIVYATHI D L  W THL ++  G +R+    EK  E   E   ++ L  +V  WL+
Sbjct:   182 PCTIVYATHILDNLAHWPTHLVHMHLGNVRQWGAIEKFKEEAPETSENSQLGEIVLKWLK 241

Query:   257 SETKLEKKRPV 267
              + +    R V
Sbjct:   242 EDLQARGPRNV 252

GO:0008150 "biological_process" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

UNIPROTKB|G4N1E4 MGG_09520 "CCR4-Not complex subunit Caf16" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 437 (158.9 bits), Expect = 3.6e-41, P = 3.6e-41
 Identities = 110/288 (38%), Positives = 161/288 (55%)

Query:     1 MADGMNENEKLNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLK 60
             MADG +   +  S++V  + +S+   D+     + +L +   SR  L+GANG+GKTTLL+
Sbjct:     1 MADG-SSTPRSPSLEVKDLTYSFP--DRSTGISNISLSLPARSRTCLIGANGAGKTTLLR 57

Query:    61 ILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPL-QGDFSAE 119
             +LAGK +   R  + V     F +      G ++YLG  W          P+ + D    
Sbjct:    58 LLAGKRL-SPRGAITVGGVDPFSEG---LEG-VTYLGLEWVLN-------PIVRTDIGVA 105

Query:   120 HMIFGVEGSD-PVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEIT 178
              ++  V G   P RR+ L+E+LDID  WRMH VSDG+RRRVQ+ MGL+ P+ VLLLDEIT
Sbjct:   106 ELLRSVGGDAYPARRDELVEVLDIDTAWRMHAVSDGERRRVQLAMGLVRPWTVLLLDEIT 165

Query:   179 VDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL 238
             VDLDV++R   LD+ K E E R AT+VYATHI D L  W THL ++  G ++     A+ 
Sbjct:   166 VDLDVLSRSGFLDWLKRETESRDATVVYATHILDNLHAWPTHLVHMHLGTVKEWGPAADF 225

Query:   239 DELRNSTN-----LLSVVESWLRSETKLEKKRPVDPPKQVQKTSPFGS 281
              E + ++      L  +V  WLR +  L+ + P    K+  +   +G+
Sbjct:   226 LEAQGASKDGNSQLGHLVLGWLRED--LKDRGPRSQHKRAPEGKSYGA 271

GO:0008150 "biological_process" evidence=ND

SGD|S000001866 CAF16 "Component of the CCR4-NOT transcriptional complex" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 417 (151.9 bits), Expect = 4.8e-39, P = 4.8e-39
 Identities = 96/230 (41%), Positives = 140/230 (60%)

Query:    13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHM----- 67
             +I+V  + + ++ +  P +  D NL I   +R L+VGANG+GK+TLLK+L+GKH+     
Sbjct:     6 AIEVRNLTYKFKESSDPSVV-DINLQIPWNTRSLVVGANGAGKSTLLKLLSGKHLCLDGK 64

Query:    68 --VGGRDVVQVLNRSSFHDTQLVCSGD----LSYLGGSWSKTVGSAGEIPLQGDFSAEHM 121
               V G D    L+ +   D + V         +YLG  W         I +  D     +
Sbjct:    65 ILVNGLDPFSPLSMNQVDDDESVEDSTNYQTTTYLGTEWCHM-----SI-INRDIGVLEL 118

Query:   122 IFGVEGSDPVRR--ERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITV 179
             +  + G D  R   ERL+ +LDID++WRMH++SDGQ+RRVQ+ MGLL P++VLLLDE+TV
Sbjct:   119 LKSI-GFDHFRERGERLVRILDIDVRWRMHRLSDGQKRRVQLAMGLLKPWRVLLLDEVTV 177

Query:   180 DLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL 229
             DLDV+AR  LL+F K E E R  ++VYATHIFDGL  W   + +++ G++
Sbjct:   178 DLDVIARARLLEFLKWETETRRCSVVYATHIFDGLAKWPNQVYHMKSGKI 227

GO:0006200 "ATP catabolic process" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0030014 "CCR4-NOT complex" evidence=IDA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IMP;IPI

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

CGD|CAL0004927 CAF16 [Candida albicans (taxid:5476)]

 Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
 Identities = 97/236 (41%), Positives = 139/236 (58%)

Query:    13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGK------H 66
             +I+V  + + +  + K  L  DFNL I  G+  L+VG NG+GK+TLL+ILAGK      H
Sbjct:    11 AIEVKNLTYEFPNSKKIGL-QDFNLAIPWGTTNLVVGPNGAGKSTLLRILAGKTLIKKGH 69

Query:    67 M-VGGRDVVQVLNRSSFHD-TQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFG 124
             + +GG D       S  H+      +  ++YLG  W+       +IP+    ++   I G
Sbjct:    70 LKLGGFDPFHF--SSQRHEQANSDINNYITYLGTEWATNSIIKRDIPVNLLLAS---IGG 124

Query:   125 VEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVV 184
                 D  RR  LI++LDID  W M  +SDG+RRRVQI MGL+ P+K+LLLDE+T+DLDVV
Sbjct:   125 ETYQD--RRNLLIDILDIDPSWSMLNISDGERRRVQIAMGLVKPWKLLLLDEVTIDLDVV 182

Query:   185 ARMDLLDFFKDECEQRGATIVYATHIFDGL-ETWATHLAYIQDGELRRAEKLAELD 239
              R  LL++ K EC++R  T+VYATHIFDGL   W   + +I  G      K+ +++
Sbjct:   183 VRSKLLNYLKQECQERNCTVVYATHIFDGLGHKWCDRVIHIDAGLKLNDVKIKDIE 238

GO:0005524 "ATP binding" evidence=ISS

GO:0030014 "CCR4-NOT complex" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA

UNIPROTKB|Q59QD0 CAF16 "Potential CCR4-NOT complex associated factor Caf16p" [Candida albicans SC5314 (taxid:237561)]

 Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
 Identities = 97/236 (41%), Positives = 139/236 (58%)

Query:    13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGK------H 66
             +I+V  + + +  + K  L  DFNL I  G+  L+VG NG+GK+TLL+ILAGK      H
Sbjct:    11 AIEVKNLTYEFPNSKKIGL-QDFNLAIPWGTTNLVVGPNGAGKSTLLRILAGKTLIKKGH 69

Query:    67 M-VGGRDVVQVLNRSSFHD-TQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFG 124
             + +GG D       S  H+      +  ++YLG  W+       +IP+    ++   I G
Sbjct:    70 LKLGGFDPFHF--SSQRHEQANSDINNYITYLGTEWATNSIIKRDIPVNLLLAS---IGG 124

Query:   125 VEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVV 184
                 D  RR  LI++LDID  W M  +SDG+RRRVQI MGL+ P+K+LLLDE+T+DLDVV
Sbjct:   125 ETYQD--RRNLLIDILDIDPSWSMLNISDGERRRVQIAMGLVKPWKLLLLDEVTIDLDVV 182

Query:   185 ARMDLLDFFKDECEQRGATIVYATHIFDGL-ETWATHLAYIQDGELRRAEKLAELD 239
              R  LL++ K EC++R  T+VYATHIFDGL   W   + +I  G      K+ +++
Sbjct:   183 VRSKLLNYLKQECQERNCTVVYATHIFDGLGHKWCDRVIHIDAGLKLNDVKIKDIE 238

GO:0005524 "ATP binding" evidence=ISS

GENEDB_PFALCIPARUM|PF14_0321 PF14_0321 "ABC transporter, putative" [Plasmodium falciparum (taxid:5833)]

 Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
 Identities = 81/261 (31%), Positives = 143/261 (54%)

Query:    11 LNSIKVCGMQFSY-EGNDKPPL--FYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHM 67
             +N I +  + ++Y  G  +  +    + NL    G R L+ G NG+GK+TLL I+AGK +
Sbjct:     1 MNEIVINNLNYNYYNGIQRTRIKALQNVNLCFERGMRILVCGKNGAGKSTLLSIIAGKKL 60

Query:    68 VGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEG 127
             +   +V+ + N+ +FHDT +  S  + Y+G  WS+    A  I ++ DF      F  E 
Sbjct:    61 IKENEVL-IFNKQAFHDTDI--SNKIGYVGEWWSEEY--AMNISIK-DFC-----FNYEY 109

Query:   128 SDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARM 187
             +   R + L++L ++D    +  +S G+R++VQI + ++    + + DE T  LD+V+R 
Sbjct:   110 TK--RYKNLLKLFELDENKIISNLSKGERKKVQIMVNIIVRKDIYIFDEATESLDLVSRK 167

Query:   188 DLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDELRNSTNL 247
              LL+F K EC +  + ++Y+THIFD ++ W+TH+ Y+ +G +     +  +  L N ++L
Sbjct:   168 LLLEFLKKECIKYNSIVIYSTHIFDHMDKWSTHVLYLSEGIVTFFSNIYNITNLENYSSL 227

Query:   248 LSVVESWLRSETKLEKKRPVD 268
                +   +  E K  KK  VD
Sbjct:   228 AEYICDHMVEEIK--KKENVD 246

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0006810 "transport" evidence=ISS

GO:0016020 "membrane" evidence=ISS

TIGR_CMR|CPS_1893 CPS_1893 "ABC transporter, ATP-binding protein" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
 Identities = 69/253 (27%), Positives = 120/253 (47%)

Query:     4 GMNENEKLNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILA 63
             G ++ +   SI   G+ F Y G  K P     +L I+ G   LL G NG+GK+TL  +L 
Sbjct:     2 GRSDTKCAMSIVTKGLSFYY-G--KKPAVDGLDLSITSGFNVLL-GPNGAGKSTLFSMLT 57

Query:    64 GKHMVGGRDVVQVLNRSSF--HDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHM 121
             G +     D+   +N   +  H   ++ S  + +   +    +     +     ++A H 
Sbjct:    58 GLYQAASGDIK--INGYDYKHHKLNIMQSMGVVFQQSTLDLDLSVKQNLTY---YAALHG 112

Query:   122 IFGVEGSDPVRRERLIEL-LDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVD 180
             I   +  D +  E L +L L   L  ++  ++ G RRRV+I   L+H  KVLLLDE TV 
Sbjct:   113 ISSAQALDNIS-EILSQLQLTKRLDDKVRSLNGGHRRRVEIARALIHQPKVLLLDEATVG 171

Query:   181 LDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDE 240
             LD+ +R  + ++     ++ G  +++ATH+ D +      L  I +G+++      EL +
Sbjct:   172 LDIDSRKMITEYVGSLSQKLGICVLWATHLIDEISA-GDQLIIIDEGKIKAQGISGELCK 230

Query:   241 LRNSTNLLSVVES 253
               N T++  +  S
Sbjct:   231 KHNVTDVYQLYRS 243

GO:0005524 "ATP binding" evidence=ISS

GO:0006810 "transport" evidence=ISS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q3EDJ0	AB19I_ARATH	No assigned EC number	0.7879	0.9489	0.9620	yes	no
Q9XF19	AB21I_ARATH	No assigned EC number	0.7801	0.9217	0.9609	no	no
Q7Z991	YE31_SCHPO	No assigned EC number	0.4344	0.8537	0.8964	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	294
COG4586	325	COG4586, COG4586, ABC-type uncharacterized transpo	3e-55
COG1131	293	COG1131, CcmA, ABC-type multidrug transport system	3e-29
cd03225	211	cd03225, ABC_cobalt_CbiO_domain1, First domain of	6e-27
COG1122	235	COG1122, CbiO, ABC-type cobalt transport system, A	1e-26
cd03230	173	cd03230, ABC_DR_subfamily_A, ATP-binding cassette	1e-24
cd00267	157	cd00267, ABC_ATPase, ATP-binding cassette transpor	3e-24
cd03267	236	cd03267, ABC_NatA_like, ATP-binding cassette domai	6e-22
COG4555	245	COG4555, NatA, ABC-type Na+ transport system, ATPa	4e-21
cd03255	218	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse	7e-20
cd03263	220	cd03263, ABC_subfamily_A, ATP-binding cassette dom	2e-19
COG1124	252	COG1124, DppF, ABC-type dipeptide/oligopeptide/nic	3e-19
TIGR03864	236	TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi	4e-19
COG1120	258	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore	1e-18
COG1119	257	COG1119, ModF, ABC-type molybdenum transport syste	1e-18
cd03266	218	cd03266, ABC_NatA_sodium_exporter, ATP-binding cas	2e-18
cd03265	220	cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist	2e-18
cd03214	180	cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind	3e-17
cd03259	213	cd03259, ABC_Carb_Solutes_like, ATP-binding casset	7e-17
cd03257	228	cd03257, ABC_NikE_OppD_transporters, ATP-binding c	7e-17
COG1136	226	COG1136, SalX, ABC-type antimicrobial peptide tran	8e-17
cd03264	211	cd03264, ABC_drug_resistance_like, ABC-type multid	6e-16
COG0488	530	COG0488, Uup, ATPase components of ABC transporter	3e-15
COG4987	573	COG4987, CydC, ABC-type transport system involved	4e-15
COG1123	539	COG1123, COG1123, ATPase components of various ABC	5e-15
cd03229	178	cd03229, ABC_Class3, ATP-binding cassette domain o	6e-15
COG4988	559	COG4988, CydD, ABC-type transport system involved	8e-15
COG1116	248	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon	1e-14
COG1123	539	COG1123, COG1123, ATPase components of various ABC	2e-14
COG3839	338	COG3839, MalK, ABC-type sugar transport systems, A	2e-14
COG1135	339	COG1135, AbcC, ABC-type metal ion transport system	3e-14
cd03268	208	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c	3e-14
TIGR02857	529	TIGR02857, CydD, thiol reductant ABC exporter, Cyd	4e-14
COG2274	709	COG2274, SunT, ABC-type bacteriocin/lantibiotic ex	7e-14
cd03221	144	cd03221, ABCF_EF-3, ATP-binding cassette domain of	8e-14
TIGR02868	530	TIGR02868, CydC, thiol reductant ABC exporter, Cyd	2e-13
COG0488	530	COG0488, Uup, ATPase components of ABC transporter	3e-13
COG1121	254	COG1121, ZnuC, ABC-type Mn/Zn transport systems, A	3e-13
cd03293	220	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c	4e-13
PRK13649	280	PRK13649, cbiO, cobalt transporter ATP-binding sub	9e-13
TIGR03608	206	TIGR03608, L_ocin_972_ABC, putative bacteriocin ex	1e-12
cd03297	214	cd03297, ABC_ModC_molybdenum_transporter, ATP-bind	1e-12
cd03235	213	cd03235, ABC_Metallic_Cations, ATP-binding cassett	1e-12
TIGR03740	223	TIGR03740, galliderm_ABC, gallidermin-class lantib	3e-12
cd03228	171	cd03228, ABCC_MRP_Like, ATP-binding cassette domai	3e-12
cd03258	233	cd03258, ABC_MetN_methionine_transporter, ATP-bind	6e-12
TIGR01188	302	TIGR01188, drrA, daunorubicin resistance ABC trans	8e-12
COG3842	352	COG3842, PotA, ABC-type spermidine/putrescine tran	9e-12
COG2884	223	COG2884, FtsE, Predicted ATPase involved in cell d	1e-11
COG3638	258	COG3638, COG3638, ABC-type phosphate/phosphonate t	1e-11
cd03256	241	cd03256, ABC_PhnC_transporter, ATP-binding cassett	1e-11
cd03301	213	cd03301, ABC_MalK_N, The N-terminal ATPase domain	2e-11
COG4133	209	COG4133, CcmA, ABC-type transport system involved	3e-11
TIGR02982	220	TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi	6e-11
TIGR01166	190	TIGR01166, cbiO, cobalt transport protein ATP-bind	6e-11
cd03295	242	cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas	7e-11
TIGR02314	343	TIGR02314, ABC_MetN, D-methionine ABC transporter,	9e-11
PRK13538	204	PRK13538, PRK13538, cytochrome c biogenesis protei	1e-10
cd03247	178	cd03247, ABCC_cytochrome_bd, ATP-binding cassette	1e-10
COG0444	316	COG0444, DppD, ABC-type dipeptide/oligopeptide/nic	2e-10
PRK13643	288	PRK13643, cbiO, cobalt transporter ATP-binding sub	2e-10
PRK13539	207	PRK13539, PRK13539, cytochrome c biogenesis protei	2e-10
TIGR02673	214	TIGR02673, FtsE, cell division ATP-binding protein	2e-10
TIGR02142	354	TIGR02142, modC_ABC, molybdenum ABC transporter, A	3e-10
PRK10253	265	PRK10253, PRK10253, iron-enterobactin transporter	5e-10
COG4608	268	COG4608, AppF, ABC-type oligopeptide transport sys	5e-10
PRK10575	265	PRK10575, PRK10575, iron-hydroxamate transporter A	6e-10
PRK11231	255	PRK11231, fecE, iron-dicitrate transporter ATP-bin	8e-10
COG1132	567	COG1132, MdlB, ABC-type multidrug transport system	8e-10
cd03298	211	cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin	9e-10
PRK13648	269	PRK13648, cbiO, cobalt transporter ATP-binding sub	1e-09
cd03216	163	cd03216, ABC_Carb_Monos_I, First domain of the ATP	1e-09
PRK10535	648	PRK10535, PRK10535, macrolide transporter ATP-bind	1e-09
TIGR01189	198	TIGR01189, ccmA, heme ABC exporter, ATP-binding pr	1e-09
PRK13634	290	PRK13634, cbiO, cobalt transporter ATP-binding sub	1e-09
cd03269	210	cd03269, ABC_putative_ATPase, ATP-binding cassette	2e-09
TIGR02315	243	TIGR02315, ABC_phnC, phosphonate ABC transporter,	2e-09
cd03233	202	cd03233, ABCG_PDR_domain1, First domain of the ple	2e-09
cd03251	234	cd03251, ABCC_MsbA, ATP-binding cassette domain of	2e-09
COG4172	534	COG4172, COG4172, ABC-type uncharacterized transpo	3e-09
PRK13647	274	PRK13647, cbiO, cobalt transporter ATP-binding sub	3e-09
PRK13635	279	PRK13635, cbiO, cobalt transporter ATP-binding sub	4e-09
cd03292	214	cd03292, ABC_FtsE_transporter, ATP-binding cassett	6e-09
cd03226	205	cd03226, ABC_cobalt_CbiO_domain2, Second domain of	6e-09
PRK13652	277	PRK13652, cbiO, cobalt transporter ATP-binding sub	6e-09
PRK13636	283	PRK13636, cbiO, cobalt transporter ATP-binding sub	1e-08
PRK13632	271	PRK13632, cbiO, cobalt transporter ATP-binding sub	1e-08
PRK13651	305	PRK13651, PRK13651, cobalt transporter ATP-binding	1e-08
TIGR02633	500	TIGR02633, xylG, D-xylose ABC transporter, ATP-bin	1e-08
COG4525	259	COG4525, TauB, ABC-type taurine transport system,	1e-08
COG1118	345	COG1118, CysA, ABC-type sulfate/molybdate transpor	2e-08
TIGR01186	363	TIGR01186, proV, glycine betaine/L-proline transpo	3e-08
cd03219	236	cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas	3e-08
TIGR03796	710	TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste	3e-08
COG4148	352	COG4148, ModC, ABC-type molybdate transport system	3e-08
PRK10908	222	PRK10908, PRK10908, cell division protein FtsE; Pr	4e-08
COG4178	604	COG4178, COG4178, ABC-type uncharacterized transpo	4e-08
cd03220	224	cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon	4e-08
TIGR01193	708	TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t	4e-08
COG1101	263	COG1101, PhnK, ABC-type uncharacterized transport	4e-08
TIGR03522	301	TIGR03522, GldA_ABC_ATP, gliding motility-associat	4e-08
COG2401	593	COG2401, COG2401, ABC-type ATPase fused to a predi	5e-08
TIGR02769	265	TIGR02769, nickel_nikE, nickel import ATP-binding	8e-08
cd03246	173	cd03246, ABCC_Protease_Secretion, ATP-binding cass	9e-08
COG4161	242	COG4161, ArtP, ABC-type arginine transport system,	1e-07
cd03252	237	cd03252, ABCC_Hemolysin, ATP-binding cassette doma	1e-07
TIGR02770	230	TIGR02770, nickel_nikD, nickel import ATP-binding	1e-07
COG4619	223	COG4619, COG4619, ABC-type uncharacterized transpo	1e-07
cd03231	201	cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog	1e-07
TIGR03719	552	TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot	2e-07
COG1129	500	COG1129, MglA, ABC-type sugar transport system, AT	2e-07
cd03253	236	cd03253, ABCC_ATM1_transporter, ATP-binding casset	2e-07
PRK15064	530	PRK15064, PRK15064, ABC transporter ATP-binding pr	2e-07
PRK10938	490	PRK10938, PRK10938, putative molybdenum transport	2e-07
cd03213	194	cd03213, ABCG_EPDR, Eye pigment and drug resistanc	3e-07
COG3840	231	COG3840, ThiQ, ABC-type thiamine transport system,	3e-07
cd03221	144	cd03221, ABCF_EF-3, ATP-binding cassette domain of	4e-07
PRK09536	402	PRK09536, btuD, corrinoid ABC transporter ATPase;	4e-07
PRK13644	274	PRK13644, cbiO, cobalt transporter ATP-binding sub	4e-07
TIGR03873	256	TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra	4e-07
COG1125	309	COG1125, OpuBA, ABC-type proline/glycine betaine t	5e-07
cd03245	220	cd03245, ABCC_bacteriocin_exporters, ATP-binding c	6e-07
PRK10419	268	PRK10419, nikE, nickel transporter ATP-binding pro	8e-07
TIGR01277	213	TIGR01277, thiQ, thiamine ABC transporter, ATP-bin	8e-07
TIGR02203	571	TIGR02203, MsbA_lipidA, lipid A export permease/AT	8e-07
cd03296	239	cd03296, ABC_CysA_sulfate_importer, ATP-binding ca	8e-07
COG4175	386	COG4175, ProV, ABC-type proline/glycine betaine tr	1e-06
PRK10247	225	PRK10247, PRK10247, putative ABC transporter ATP-b	1e-06
PRK13640	282	PRK13640, cbiO, cobalt transporter ATP-binding sub	1e-06
TIGR00958	711	TIGR00958, 3a01208, Conjugate Transporter-2 (CT2)	1e-06
TIGR00955	617	TIGR00955, 3a01204, The Eye Pigment Precursor Tran	1e-06
cd03260	227	cd03260, ABC_PstB_phosphate_transporter, ATP-bindi	1e-06
TIGR02204	576	TIGR02204, MsbA_rel, ABC transporter, permease/ATP	1e-06
TIGR00968	237	TIGR00968, 3a0106s01, sulfate ABC transporter, ATP	1e-06
COG4172	534	COG4172, COG4172, ABC-type uncharacterized transpo	2e-06
PRK13543	214	PRK13543, PRK13543, cytochrome c biogenesis protei	2e-06
COG4778	235	COG4778, PhnL, ABC-type phosphonate transport syst	2e-06
COG0411	250	COG0411, LivG, ABC-type branched-chain amino acid	3e-06
PRK09493	240	PRK09493, glnQ, glutamine ABC transporter ATP-bind	3e-06
PRK09984	262	PRK09984, PRK09984, phosphonate/organophosphate es	3e-06
COG4136	213	COG4136, COG4136, ABC-type uncharacterized transpo	3e-06
COG3845	501	COG3845, COG3845, ABC-type uncharacterized transpo	4e-06
TIGR03005	252	TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB	4e-06
COG4152	300	COG4152, COG4152, ABC-type uncharacterized transpo	4e-06
TIGR03771	223	TIGR03771, anch_rpt_ABC, anchored repeat-type ABC	4e-06
TIGR03375	694	TIGR03375, type_I_sec_LssB, type I secretion syste	4e-06
TIGR02324	224	TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys	4e-06
PRK13637	287	PRK13637, cbiO, cobalt transporter ATP-binding sub	7e-06
cd03223	166	cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset	7e-06
TIGR03797	686	TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste	7e-06
COG1134	249	COG1134, TagH, ABC-type polysaccharide/polyol phos	9e-06
cd03237	246	cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin	1e-05
PRK10418	254	PRK10418, nikD, nickel transporter ATP-binding pro	1e-05
PRK11288	501	PRK11288, araG, L-arabinose transporter ATP-bindin	1e-05
PRK11147	635	PRK11147, PRK11147, ABC transporter ATPase compone	1e-05
smart00382	148	smart00382, AAA, ATPases associated with a variety	1e-05
PLN03073	718	PLN03073, PLN03073, ABC transporter F family; Prov	1e-05
PRK13633	280	PRK13633, PRK13633, cobalt transporter ATP-binding	1e-05
TIGR01978	243	TIGR01978, sufC, FeS assembly ATPase SufC	1e-05
COG1245	591	COG1245, COG1245, Predicted ATPase, RNase L inhibi	2e-05
cd03232	192	cd03232, ABCG_PDR_domain2, Second domain of the pl	2e-05
PRK13650	279	PRK13650, cbiO, cobalt transporter ATP-binding sub	2e-05
COG4181	228	COG4181, COG4181, Predicted ABC-type transport sys	2e-05
COG4559	259	COG4559, COG4559, ABC-type hemin transport system,	2e-05
PRK10851	353	PRK10851, PRK10851, sulfate/thiosulfate transporte	2e-05
cd03254	229	cd03254, ABCC_Glucan_exporter_like, ATP-binding ca	3e-05
TIGR02323	253	TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys	3e-05
PRK10522	547	PRK10522, PRK10522, multidrug transporter membrane	3e-05
PRK11247	257	PRK11247, ssuB, aliphatic sulfonates transport ATP	3e-05
PRK09700	510	PRK09700, PRK09700, D-allose transporter ATP-bindi	3e-05
TIGR01257	2272	TIGR01257, rim_protein, retinal-specific rim ABC t	3e-05
PRK11819	556	PRK11819, PRK11819, putative ABC transporter ATP-b	5e-05
PRK11153	343	PRK11153, metN, DL-methionine transporter ATP-bind	5e-05
PRK11607	377	PRK11607, potG, putrescine transporter ATP-binding	5e-05
pfam13304	256	pfam13304, AAA_21, AAA domain	5e-05
PRK15064	530	PRK15064, PRK15064, ABC transporter ATP-binding pr	6e-05
PRK15134	529	PRK15134, PRK15134, microcin C ABC transporter ATP	6e-05
cd03294	269	cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette	6e-05
PRK11000	369	PRK11000, PRK11000, maltose/maltodextrin transport	7e-05
COG4107	258	COG4107, PhnK, ABC-type phosphonate transport syst	7e-05
TIGR01184	230	TIGR01184, ntrCD, nitrate transport ATP-binding su	7e-05
cd03300	232	cd03300, ABC_PotA_N, ATP-binding cassette domain o	8e-05
TIGR01846	694	TIGR01846, type_I_sec_HlyB, type I secretion syste	8e-05
cd03299	235	cd03299, ABC_ModC_like, ATP-binding cassette domai	8e-05
TIGR03258	362	TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans	8e-05
PRK09473	330	PRK09473, oppD, oligopeptide transporter ATP-bindi	9e-05
PRK11629	233	PRK11629, lolD, lipoprotein transporter ATP-bindin	1e-04
cd03224	222	cd03224, ABC_TM1139_LivF_branched, ATP-binding cas	1e-04
PRK15112	267	PRK15112, PRK15112, antimicrobial peptide ABC syst	1e-04
PRK11432	351	PRK11432, fbpC, ferric transporter ATP-binding sub	1e-04
COG4604	252	COG4604, CeuD, ABC-type enterochelin transport sys	1e-04
COG3840	231	COG3840, ThiQ, ABC-type thiamine transport system,	2e-04
COG4615	546	COG4615, PvdE, ABC-type siderophore export system,	2e-04
COG0410	237	COG0410, LivF, ABC-type branched-chain amino acid	2e-04
pfam00005	119	pfam00005, ABC_tran, ABC transporter	2e-04
PRK11022	326	PRK11022, dppD, dipeptide transporter ATP-binding	2e-04
TIGR01187	325	TIGR01187, potA, spermidine/putrescine ABC transpo	2e-04
PRK13639	275	PRK13639, cbiO, cobalt transporter ATP-binding sub	2e-04
PRK13641	287	PRK13641, cbiO, cobalt transporter ATP-binding sub	2e-04
PRK11124	242	PRK11124, artP, arginine transporter ATP-binding s	2e-04
PRK13549	506	PRK13549, PRK13549, xylose transporter ATP-binding	3e-04
TIGR03265	353	TIGR03265, PhnT2, putative 2-aminoethylphosphonate	3e-04
COG5265	497	COG5265, ATM1, ABC-type transport system involved	3e-04
COG4674	249	COG4674, COG4674, Uncharacterized ABC-type transpo	3e-04
PRK15056	272	PRK15056, PRK15056, manganese/iron transporter ATP	4e-04
COG4167	267	COG4167, SapF, ABC-type antimicrobial peptide tran	4e-04
PRK13537	306	PRK13537, PRK13537, nodulation ABC transporter Nod	4e-04
PRK13547	272	PRK13547, hmuV, hemin importer ATP-binding subunit	4e-04
COG1125	309	COG1125, OpuBA, ABC-type proline/glycine betaine t	5e-04
PRK11147	635	PRK11147, PRK11147, ABC transporter ATPase compone	5e-04
PRK14250	241	PRK14250, PRK14250, phosphate ABC transporter ATP-	5e-04
PRK13548	258	PRK13548, hmuV, hemin importer ATP-binding subunit	5e-04
COG1245	591	COG1245, COG1245, Predicted ATPase, RNase L inhibi	6e-04
PLN03211	659	PLN03211, PLN03211, ABC transporter G-25; Provisio	6e-04
PRK14246	257	PRK14246, PRK14246, phosphate ABC transporter ATP-	6e-04
cd03300	232	cd03300, ABC_PotA_N, ATP-binding cassette domain o	7e-04
PRK10636	638	PRK10636, PRK10636, putative ABC transporter ATP-b	7e-04
cd03234	226	cd03234, ABCG_White, White pigment protein homolog	7e-04
TIGR03375	694	TIGR03375, type_I_sec_LssB, type I secretion syste	8e-04
TIGR03411	242	TIGR03411, urea_trans_UrtD, urea ABC transporter,	8e-04
PRK11308	327	PRK11308, dppF, dipeptide transporter ATP-binding	8e-04
PLN03130	1622	PLN03130, PLN03130, ABC transporter C family membe	9e-04
TIGR01192	585	TIGR01192, chvA, glucan exporter ATP-binding prote	9e-04
TIGR03719	552	TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot	0.001
PRK11819	556	PRK11819, PRK11819, putative ABC transporter ATP-b	0.001
PRK10070	400	PRK10070, PRK10070, glycine betaine transporter AT	0.001
cd03217	200	cd03217, ABC_FeS_Assembly, ABC-type transport syst	0.001
PRK10771	232	PRK10771, thiQ, thiamine transporter ATP-binding s	0.001
cd03248	226	cd03248, ABCC_TAP, ATP-binding cassette domain of	0.001
cd03250	204	cd03250, ABCC_MRP_domain1, ATP-binding cassette do	0.001
TIGR00956	1394	TIGR00956, 3a01205, Pleiotropic Drug Resistance (P	0.001
PRK11176	582	PRK11176, PRK11176, lipid transporter ATP-binding/	0.001
cd03262	213	cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai	0.002
PRK11831	269	PRK11831, PRK11831, putative ABC transporter ATP-b	0.002
COG1126	240	COG1126, GlnQ, ABC-type polar amino acid transport	0.002
pfam13304	256	pfam13304, AAA_21, AAA domain	0.003
COG0396	251	COG0396, sufC, Cysteine desulfurase activator ATPa	0.003
PRK13646	286	PRK13646, cbiO, cobalt transporter ATP-binding sub	0.003
PRK11144	352	PRK11144, modC, molybdate transporter ATP-binding	0.003
PRK10261	623	PRK10261, PRK10261, glutathione transporter ATP-bi	0.003
PRK10789	569	PRK10789, PRK10789, putative multidrug transporter	0.003
TIGR01257	2272	TIGR01257, rim_protein, retinal-specific rim ABC t	0.004
PRK15439	510	PRK15439, PRK15439, autoinducer 2 ABC transporter	0.004
CHL00131	252	CHL00131, ycf16, sulfate ABC transporter protein;	0.004
PRK13638	271	PRK13638, cbiO, cobalt transporter ATP-binding sub	0.004
PLN03140	1470	PLN03140, PLN03140, ABC transporter G family membe	0.004
PRK11160	574	PRK11160, PRK11160, cysteine/glutathione ABC trans	0.004

>gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score =  181 bits (461), Expect = 3e-55
 Identities = 71/221 (32%), Positives = 105/221 (47%), Gaps = 30/221 (13%)

Query: 34  DFNLGISPGSRCLLVGANGSGKTTLLKILAGKHM-------VGG----RDVVQVLNRSSF 82
           D +  I  G     +GANG+GK+T LK+L G  +       V G    R   + L     
Sbjct: 42  DISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGL 101

Query: 83  HDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSD-PVRRERLIELLD 141
              Q         L   W        ++P         +I+ +   +   R + L E+LD
Sbjct: 102 VMGQ--------KLQLWW--------DLPALDSLEVLKLIYEIPDDEFAERLDFLTEILD 145

Query: 142 ID--LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQ 199
           ++  L+W + K+S GQR R ++   LLHP KVL LDE TV LDV A+ ++ +F K+  E+
Sbjct: 146 LEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEE 205

Query: 200 RGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDE 240
           R AT++  THIFD + T    +  I  G+L     LA+L E
Sbjct: 206 RQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQE 246

Length = 325

>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]

 Score =  112 bits (282), Expect = 3e-29
 Identities = 61/252 (24%), Positives = 110/252 (43%), Gaps = 23/252 (9%)

Query: 34  DFNLGISPGSRCLLVGANGSGKTTLLKILAGK-HMVGGRDVVQVLNRSSFHDTQLVCSGD 92
             +  + PG    L+G NG+GKTTLLKILAG      G   + VL      +   V    
Sbjct: 23  GVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGE--ILVLGYDVVKEPAKVRRR- 79

Query: 93  LSYLGGSWSKTVGSAGEIPLQGDFSAE------HMIFGVEGS-DPVRRERLIELLDID-- 143
           + Y+            E  L  + +          ++G+       R E L+EL  ++  
Sbjct: 80  IGYV----------PQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDK 129

Query: 144 LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGAT 203
              ++  +S G ++R+ I + LLH  ++L+LDE T  LD  +R ++ +  ++  ++ G T
Sbjct: 130 ANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVT 189

Query: 204 IVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDELRNSTNLLSVVESWLRSETKLEK 263
           I+ +THI +  E     +  + DG++       EL E      ++ +    L     LE 
Sbjct: 190 ILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEKFGGKGVIELEPERLELAELLEG 249

Query: 264 KRPVDPPKQVQK 275
            + V   +++ +
Sbjct: 250 LKLVKGEEELAE 261

Length = 293

>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system

 Score =  104 bits (261), Expect = 6e-27
 Identities = 66/227 (29%), Positives = 99/227 (43%), Gaps = 41/227 (18%)

Query: 21  FSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILA-------GKHMVGGRDV 73
           FSY  +   P   D +L I  G   L+VG NGSGK+TLL++L        G+ +V G+D+
Sbjct: 7   FSY-PDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDL 65

Query: 74  VQV-LNRSSFH--------DTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFG 124
            ++ L              D Q                TV    E+     F  E++  G
Sbjct: 66  TKLSLKELRRKVGLVFQNPDDQFFGP------------TVEE--EVA----FGLENL--G 105

Query: 125 VEGSD-PVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDL 181
           +   +   R E  +EL+ ++         +S GQ++RV I   L     +LLLDE T  L
Sbjct: 106 LPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGL 165

Query: 182 DVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGE 228
           D   R +LL+  K    + G TI+  TH  D L   A  +  ++DG+
Sbjct: 166 DPAGRRELLELLKKLKAE-GKTIIIVTHDLDLLLELADRVIVLEDGK 211

Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211

>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

 Score =  103 bits (260), Expect = 1e-26
 Identities = 68/246 (27%), Positives = 104/246 (42%), Gaps = 44/246 (17%)

Query: 14  IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAG--KH----- 66
           I+   + F Y G        D +L I  G R LL+G NGSGK+TLLK+L G  K      
Sbjct: 4   IEAENLSFRYPGRK--AALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEV 61

Query: 67  MVGGRDVVQVLNRSSFH----------DTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDF 116
           +V G D     +               D QL                      +  +  F
Sbjct: 62  LVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGP------------------TVEDEVAF 103

Query: 117 SAEHMIFGVEGSDPVRR-ERLIELLDID--LQWRMHKVSDGQRRRVQICMGL-LHPFKVL 172
             E++  G+   +   R    +EL+ ++  L      +S GQ++RV I   L + P ++L
Sbjct: 104 GLENL--GLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGP-EIL 160

Query: 173 LLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRA 232
           LLDE T  LD   R +LL+  K   E+ G TI+  TH  + +  +A  +  + DG++   
Sbjct: 161 LLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILAD 220

Query: 233 EKLAEL 238
              AE+
Sbjct: 221 GDPAEI 226

Length = 235

>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A

 Score = 97.1 bits (243), Expect = 1e-24
 Identities = 46/204 (22%), Positives = 80/204 (39%), Gaps = 56/204 (27%)

Query: 34  DFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL 93
           D +L +  G    L+G NG+GKTTL+KI+ G            L +          SG++
Sbjct: 18  DISLTVEKGEIYGLLGPNGAGKTTLIKIILG------------LLKPD--------SGEI 57

Query: 94  SYLGGSWSKTVGSA--------GEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQ 145
             LG    K              E  L  + +    +                       
Sbjct: 58  KVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENL----------------------- 94

Query: 146 WRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIV 205
               K+S G ++R+ +   LLH  ++L+LDE T  LD  +R +  +  ++   + G TI+
Sbjct: 95  ----KLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELK-KEGKTIL 149

Query: 206 YATHIFDGLETWATHLAYIQDGEL 229
            ++HI +  E     +A + +G +
Sbjct: 150 LSSHILEEAERLCDRVAILNNGRI 173

This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173

>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain

 Score = 95.4 bits (238), Expect = 3e-24
 Identities = 51/214 (23%), Positives = 81/214 (37%), Gaps = 57/214 (26%)

Query: 15  KVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVV 74
           ++  + F Y G        + +L +  G    LVG NGSGK+TLL+ +AG          
Sbjct: 1   EIENLSFRYGGR---TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKP------ 51

Query: 75  QVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRE 134
                          SG++   G   +K                                
Sbjct: 52  --------------TSGEILIDGKDIAK-------------------------LPLEELR 72

Query: 135 RLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFK 194
           R I  +         ++S GQR+RV +   LL    +LLLDE T  LD  +R  LL+  +
Sbjct: 73  RRIGYV--------PQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLR 124

Query: 195 DECEQRGATIVYATHIFDGLETWATHLAYIQDGE 228
           +   + G T++  TH  +  E  A  +  ++DG+
Sbjct: 125 ELA-EEGRTVIIVTHDPELAELAADRVIVLKDGK 157

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157

>gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA

 Score = 91.6 bits (228), Expect = 6e-22
 Identities = 63/206 (30%), Positives = 96/206 (46%), Gaps = 22/206 (10%)

Query: 34  DFNLGISPGSRCLLVGANGSGKTTLLKILAGK-HMVGGRDVVQVL------NRSSFHDTQ 86
             +  I  G     +G NG+GKTT LKIL+G      G   V+V        R  F    
Sbjct: 39  GISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGE--VRVAGLVPWKRRKKFLRRI 96

Query: 87  LVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSD-PVRRERLIELLDID-- 143
            V  G  + L   W        ++P+   F     I+ +  +    R + L ELLD++  
Sbjct: 97  GVVFGQKTQL--WW--------DLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEEL 146

Query: 144 LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGAT 203
           L   + ++S GQR R +I   LLH  ++L LDE T+ LDVVA+ ++ +F K+   +RG T
Sbjct: 147 LDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTT 206

Query: 204 IVYATHIFDGLETWATHLAYIQDGEL 229
           ++  +H    +E  A  +  I  G L
Sbjct: 207 VLLTSHYMKDIEALARRVLVIDKGRL 232

NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236

>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

 Score = 89.4 bits (222), Expect = 4e-21
 Identities = 54/239 (22%), Positives = 93/239 (38%), Gaps = 30/239 (12%)

Query: 34  DFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQ---LVCS 90
           D +     G    L+G NG+GKTTLL+++A                +          +  
Sbjct: 20  DVSFEAEEGEITGLLGENGAGKTTLLRMIA----------------TLLIPDSGKVTIDG 63

Query: 91  GDLSYLGGSWSKTVG-SAGEIPLQGDFSAEH------MIFGVEGSDPVRR-ERLIELLDI 142
            D         + +G   GE  L    +A         + G+   +   R   L + L +
Sbjct: 64  VDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQL 123

Query: 143 D--LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQR 200
              L  R+ + S G +++V I   L+H   +L+LDE T  LD+  R    DF K + +  
Sbjct: 124 LEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIK-QLKNE 182

Query: 201 GATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDELRNSTNLLSVVESWLRSET 259
           G  +++++HI   +E     +  +  GE+     +  LD      NL  +    L+ E 
Sbjct: 183 GRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDARTVLRNLEEIFAFALKLEE 241

Length = 245

>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein

 Score = 85.2 bits (212), Expect = 7e-20
 Identities = 63/246 (25%), Positives = 106/246 (43%), Gaps = 58/246 (23%)

Query: 14  IKVCGMQFSYEGNDKP-PLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRD 72
           I++  +  +Y G  +        +L I  G    +VG +GSGK+TLL IL G        
Sbjct: 1   IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGG-------- 52

Query: 73  VVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHM--IF------- 123
               L+R +        SG++   G      +    E  L   F   H+  +F       
Sbjct: 53  ----LDRPT--------SGEVRVDG----TDISKLSEKEL-AAFRRRHIGFVFQSFNLLP 95

Query: 124 ---------------GVEGSDPVRRERLIELLD-IDLQWRMHK----VSDGQRRRVQICM 163
                          GV   +  RRER  ELL+ + L  R++     +S GQ++RV I  
Sbjct: 96  DLTALENVELPLLLAGVPKKE--RRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIAR 153

Query: 164 GLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAY 223
            L +  K++L DE T +LD     ++++  ++  ++ G TIV  TH  + L  +A  +  
Sbjct: 154 ALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPE-LAEYADRIIE 212

Query: 224 IQDGEL 229
           ++DG++
Sbjct: 213 LRDGKI 218

This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218

>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A

 Score = 84.5 bits (210), Expect = 2e-19
 Identities = 56/219 (25%), Positives = 89/219 (40%), Gaps = 49/219 (22%)

Query: 34  DFNLGISPGSRCL-LVGANGSGKTTLLKILAGKH-------MVGGRDVVQVLNRSSFHDT 85
           D +L +  G     L+G NG+GKTT LK+L G+         + G  +            
Sbjct: 20  DLSLNVYKGE-IFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKA------ 72

Query: 86  QLVCSGDLSYLGGSWSKTVGSAGEIPLQGD-----FSA-EHMIF-----GVEGSD-PVRR 133
                  L Y               P Q D      +  EH+ F     G+  S+     
Sbjct: 73  ---ARQSLGY--------------CP-QFDALFDELTVREHLRFYARLKGLPKSEIKEEV 114

Query: 134 ERLIELLDIDLQW--RMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLD 191
           E L+ +L +  +   R   +S G +R++ + + L+    VLLLDE T  LD  +R  + D
Sbjct: 115 ELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWD 174

Query: 192 FFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELR 230
              +   ++G +I+  TH  D  E     +A + DG+LR
Sbjct: 175 LILE--VRKGRSIILTTHSMDEAEALCDRIAIMSDGKLR 211

The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220

>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

 Score = 84.6 bits (210), Expect = 3e-19
 Identities = 58/242 (23%), Positives = 103/242 (42%), Gaps = 27/242 (11%)

Query: 13  SIKVCGMQFSY-EGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILA-------G 64
            + V  +   Y  G        + +L I  G    +VG +GSGK+TL ++LA       G
Sbjct: 3   LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSG 62

Query: 65  KHMVGGRDVVQVLNRSSF-HDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIF 123
             ++ G+ +       +F    Q+V     S L      TVG     PL+          
Sbjct: 63  SILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRR--TVGRILSEPLR---------- 110

Query: 124 GVEGSDPVRRE--RLIELLDIDLQW---RMHKVSDGQRRRVQICMGLLHPFKVLLLDEIT 178
              G    ++    L++ + +   +   R H++S GQR+R+ I   L+   K+L+LDE T
Sbjct: 111 -PHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPT 169

Query: 179 VDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL 238
             LDV  +  +L+   +  ++RG T ++ +H    +E     +A + +G++       EL
Sbjct: 170 SALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEEL 229

Query: 239 DE 240
             
Sbjct: 230 LS 231

Length = 252

>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

 Score = 83.9 bits (208), Expect = 4e-19
 Identities = 62/225 (27%), Positives = 95/225 (42%), Gaps = 50/225 (22%)

Query: 13  SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKIL-------AGK 65
           +++V G+ F Y          D +  + PG    L+G NG+GK+TL  +L        G+
Sbjct: 1   ALEVAGLSFRY---GARRALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQ 57

Query: 66  HMVGGRDVVQ----------VLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGD 115
             V G D+ +          V+ +    D  L    +L Y                    
Sbjct: 58  ISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRY-------------------- 97

Query: 116 FSAEHMIFGVEGSDPVRRERLIELLD-IDLQWRMH-KV---SDGQRRRVQICMGLLHPFK 170
            +A H +   E      R R+ ELL  + L  R   KV   + G RRRV+I   LLH   
Sbjct: 98  HAALHGLSRAEA-----RARIAELLARLGLAERADDKVRELNGGHRRRVEIARALLHRPA 152

Query: 171 VLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLE 215
           +LLLDE TV LD  +R  +    +     +G ++++ATH+ D +E
Sbjct: 153 LLLLDEPTVGLDPASRAAITAHVRALARDQGLSVLWATHLVDEIE 197

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236

>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

 Score = 83.0 bits (206), Expect = 1e-18
 Identities = 64/221 (28%), Positives = 106/221 (47%), Gaps = 9/221 (4%)

Query: 13  SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMV-GGR 71
            ++V  + F Y G    P+  D +  I  G    ++G NGSGK+TLLK LAG      G 
Sbjct: 2   MLEVENLSFGYGGK---PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGE 58

Query: 72  DVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVG-SAGEIPLQGDFSAEHMIFGVEGSDP 130
             V +  +     +    +  L+Y+  S S   G +  E+ L G +    +       D 
Sbjct: 59  --VLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDE 116

Query: 131 VRRERLIELLDI-DLQWR-MHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMD 188
              E  +ELL +  L  R + ++S G+R+RV I   L     +LLLDE T  LD+  +++
Sbjct: 117 EIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIE 176

Query: 189 LLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL 229
           +L+  +D   ++G T+V   H  +    +A HL  ++DG++
Sbjct: 177 VLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKI 217

Length = 258

>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

 Score = 82.7 bits (205), Expect = 1e-18
 Identities = 59/234 (25%), Positives = 99/234 (42%), Gaps = 42/234 (17%)

Query: 26  NDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKH------------MVGGRDV 73
           N K  L  D +  ++PG    +VG NG+GKTTLL +L G+H              G  + 
Sbjct: 42  NGKKIL-GDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGET 100

Query: 74  VQVLNR------SSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEG 127
           +  L +      S  H+   V            +       ++ L G F++   I+  + 
Sbjct: 101 IFELRKRIGLVSSELHERFRV----------RET-----VRDVVLSGFFASI-GIYQED- 143

Query: 128 SDPVRRER---LIELLDID--LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLD 182
                      L+ELL            +S G++RRV I   L+   ++L+LDE    LD
Sbjct: 144 LTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLD 203

Query: 183 VVARMDLLDFFKDECEQRGAT-IVYATHIFDGLETWATHLAYIQDGELRRAEKL 235
           ++AR  LL+  ++     GA  +++ TH  + +    TH   +++GE+    KL
Sbjct: 204 LIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQGKL 257

Length = 257

>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter

 Score = 81.6 bits (202), Expect = 2e-18
 Identities = 60/217 (27%), Positives = 91/217 (41%), Gaps = 44/217 (20%)

Query: 34  DFNLGISPGSRCLLVGANGSGKTTLLKILA-------GKHMVGGRDVVQ----VLNRSSF 82
             +  + PG    L+G NG+GKTT L++LA       G   V G DVV+       R  F
Sbjct: 23  GVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGF 82

Query: 83  HDT------QLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRR-ER 135
                    +L    +L Y  G                       ++G++G +   R E 
Sbjct: 83  VSDSTGLYDRLTARENLEYFAG-----------------------LYGLKGDELTARLEE 119

Query: 136 LIELLDID--LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFF 193
           L + L ++  L  R+   S G R++V I   L+H   VLLLDE T  LDV+A   L +F 
Sbjct: 120 LADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFI 179

Query: 194 KDECEQRGATIVYATHIFDGLETWATHLAYIQDGELR 230
           +      G  I+++THI   +E     +  +  G + 
Sbjct: 180 RQLRAL-GKCILFSTHIMQEVERLCDRVVVLHRGRVV 215

NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218

>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein

 Score = 81.6 bits (202), Expect = 2e-18
 Identities = 61/224 (27%), Positives = 101/224 (45%), Gaps = 41/224 (18%)

Query: 34  DFNLGISPGSRCLLVGANGSGKTTLLKILA-------GKHMVGGRDVVQVLNRSSFHDTQ 86
             +  +  G    L+G NG+GKTT +K+L        G+  V G DVV+        + +
Sbjct: 18  GVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVR--------EPR 69

Query: 87  LVCSGDLSYLGGSWSKTVGSAG-EIPLQGDFSA-EHM-----IFGVEGSDPVRRERLIEL 139
            V             + +G    ++ +  + +  E++     ++GV G+   RRER+ EL
Sbjct: 70  EV------------RRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGA--ERRERIDEL 115

Query: 140 LD-IDLQWRMHKV----SDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFK 194
           LD + L     ++    S G RRR++I   L+H  +VL LDE T+ LD   R  + ++ +
Sbjct: 116 LDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIE 175

Query: 195 DECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL 238
              E+ G TI+  TH  +  E     +A I  G +       EL
Sbjct: 176 KLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219

DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins

 Score = 77.5 bits (192), Expect = 3e-17
 Identities = 49/200 (24%), Positives = 79/200 (39%), Gaps = 61/200 (30%)

Query: 21  FSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRS 80
             Y G     +  D +L I  G    ++G NG+GK+TLLK LAG            L + 
Sbjct: 7   VGYGGR---TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAG------------LLKP 51

Query: 81  SFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRER----- 135
           S                         +GEI          ++ G + +    +E      
Sbjct: 52  S-------------------------SGEI----------LLDGKDLASLSPKELARKIA 76

Query: 136 ----LIELLDID--LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDL 189
                +ELL +        +++S G+R+RV +   L     +LLLDE T  LD+  +++L
Sbjct: 77  YVPQALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIEL 136

Query: 190 LDFFKDECEQRGATIVYATH 209
           L+  +    +RG T+V   H
Sbjct: 137 LELLRRLARERGKTVVMVLH 156

ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180

>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like

 Score = 77.2 bits (191), Expect = 7e-17
 Identities = 55/197 (27%), Positives = 87/197 (44%), Gaps = 38/197 (19%)

Query: 30  PLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVC 89
               D +L + PG    L+G +G GKTTLL+++AG            L R          
Sbjct: 14  RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAG------------LER--------PD 53

Query: 90  SGDLSYLGGSWSKTVGSAGEIPL--QGDFS-------AEHMIFGVE---GSDPVRRER-- 135
           SG++   G   +        I +  Q D++       AE++ FG++         R R  
Sbjct: 54  SGEILIDGRDVTGVPPERRNIGMVFQ-DYALFPHLTVAENIAFGLKLRGVPKAEIRARVR 112

Query: 136 -LIELLDID--LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDF 192
            L+EL+ ++  L    H++S GQ++RV +   L     +LLLDE    LD   R +L + 
Sbjct: 113 ELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREE 172

Query: 193 FKDECEQRGATIVYATH 209
            K+   + G T +Y TH
Sbjct: 173 LKELQRELGITTIYVTH 189

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213

>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters

 Score = 77.5 bits (192), Expect = 7e-17
 Identities = 58/216 (26%), Positives = 97/216 (44%), Gaps = 34/216 (15%)

Query: 34  DFNLGISPGSRCLLVGANGSGKTTLLKILA-------GKHMVGGRDVVQVLNRSSFHDTQ 86
           D +  I  G    LVG +GSGK+TL + +        G  +  G+D++++  R      +
Sbjct: 23  DVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRR-----LR 77

Query: 87  LVCSGDLSYL----GGSW--SKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELL 140
            +   ++  +      S     T+G     PL+        I G       R+E ++ LL
Sbjct: 78  KIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLR--------IHGKLSKKEARKEAVLLLL 129

Query: 141 ------DIDLQWRMHKVSDGQRRRVQICMGL-LHPFKVLLLDEITVDLDVVARMDLLDFF 193
                 +  L    H++S GQR+RV I   L L+P K+L+ DE T  LDV  +  +LD  
Sbjct: 130 VGVGLPEEVLNRYPHELSGGQRQRVAIARALALNP-KLLIADEPTSALDVSVQAQILDLL 188

Query: 194 KDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL 229
           K   E+ G T+++ TH    +   A  +A +  G++
Sbjct: 189 KKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKI 224

The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228

>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score = 77.2 bits (191), Expect = 8e-17
 Identities = 63/246 (25%), Positives = 111/246 (45%), Gaps = 47/246 (19%)

Query: 14  IKVCGMQFSY-EGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILA-------GK 65
           I++  +   Y  G +K     D NL I  G    +VG +GSGK+TLL +L        G+
Sbjct: 2   IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGE 61

Query: 66  HMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVG----SAGEIPLQGDFSAE-- 119
            ++ G+D+      +   + +L              K +G    +   +P   D +    
Sbjct: 62  VLINGKDL------TKLSEKELA-----KLRR----KKIGFVFQNFNLLP---DLTVLEN 103

Query: 120 ---HMIFGVEGSDPVRRERLIELLD--IDLQWRMHK-----VSDGQRRRVQICMGLLHPF 169
               ++    G    RR+R  E L   + L+ R+ K     +S GQ++RV I   L++  
Sbjct: 104 VELPLLIA--GKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNP 161

Query: 170 KVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFD-GLETWATHLAYIQDGE 228
           K++L DE T +LD     ++L+  ++  ++RG TI+  TH  D  L  +A  +  ++DG+
Sbjct: 162 KIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTH--DPELAKYADRVIELKDGK 219

Query: 229 LRRAEK 234
           +   E 
Sbjct: 220 IEEEEL 225

Length = 226

>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component

 Score = 74.5 bits (184), Expect = 6e-16
 Identities = 55/216 (25%), Positives = 96/216 (44%), Gaps = 42/216 (19%)

Query: 34  DFNLGISPGSRCLLVGANGSGKTTLLKILA-------GKHMVGGRDVVQVLNRSSFHDTQ 86
             +L + PG   LL G NG+GKTTL++ILA       G   + G+DV++           
Sbjct: 18  GVSLTLGPGMYGLL-GPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLK--QPQKLRRR- 73

Query: 87  LVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAE----HMIF--GVEGSDPVRRERLIELL 140
                 + YL            E  +  +F+      ++ +  G+   +   + R+ E+L
Sbjct: 74  ------IGYL----------PQEFGVYPNFTVREFLDYIAWLKGIPSKE--VKARVDEVL 115

Query: 141 D-IDLQWRMHK----VSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKD 195
           + ++L  R  K    +S G RRRV I   L+    +L++DE T  LD   R+   +   +
Sbjct: 116 ELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSE 175

Query: 196 ECEQRGATIVYATHIFDGLETWATHLAYIQDGELRR 231
             E R   ++ +THI + +E+    +A +  G+L  
Sbjct: 176 LGEDR--IVILSTHIVEDVESLCNQVAVLNKGKLVF 209

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211

>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

 Score = 75.4 bits (186), Expect = 3e-15
 Identities = 52/211 (24%), Positives = 84/211 (39%), Gaps = 43/211 (20%)

Query: 21  FSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGK--HMVGGRDVVQVLN 78
             Y+G     L  D +  I  G R  +VG NG+GK+TLLK+LAG+   + G   V + + 
Sbjct: 329 KGYDG--GRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVK 386

Query: 79  RSSFHDTQLVCSGDLS---YLGGSWSKTVGSAGEIPLQG-----DFSAEHMIFGVEGSDP 130
              F   +     D +    L    S+      E  ++       F+ E           
Sbjct: 387 IGYFDQHRDELDPDKTVLEEL----SEGFPDGDEQEVRAYLGRFGFTGEDQ--------- 433

Query: 131 VRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLL 190
              E+ + +L           S G++ R+ +   LL P  +LLLDE T  LD+ +   L 
Sbjct: 434 ---EKPVGVL-----------SGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALE 479

Query: 191 DFFKDECEQRGATIVYATHIFDGLETWATHL 221
           +   D       T++  +H    L+  AT +
Sbjct: 480 EALLD----FEGTVLLVSHDRYFLDRVATRI 506

Length = 530

>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score = 74.7 bits (184), Expect = 4e-15
 Identities = 57/214 (26%), Positives = 98/214 (45%), Gaps = 23/214 (10%)

Query: 13  SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILA-------GK 65
           ++++  + F+Y G     L  +FNL ++ G +  ++G +GSGK+TLL++LA       G 
Sbjct: 336 ALELRNVSFTYPGQQTKAL-KNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGS 394

Query: 66  HMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGV 125
             + G + +  L+  +  +T  V +  +    G+    +  A       D S E +    
Sbjct: 395 ITLNGVE-IASLDEQALRETISVLTQRVHLFSGTLRDNLRLA-----NPDASDEELW--- 445

Query: 126 EGSDPVRRERLIELLDIDLQWRM----HKVSDGQRRRVQICMGLLHPFKVLLLDEITVDL 181
                V  E+L+E     L   +     ++S G+RRR+ +   LLH   + LLDE T  L
Sbjct: 446 AALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGL 505

Query: 182 DVVARMDLLDFFKDECEQRGATIVYATHIFDGLE 215
           D +    +L    +  E  G T++  TH   GLE
Sbjct: 506 DPITERQVLALLFEHAE--GKTLLMVTHRLRGLE 537

Length = 573

>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

 Score = 74.5 bits (184), Expect = 5e-15
 Identities = 65/220 (29%), Positives = 93/220 (42%), Gaps = 44/220 (20%)

Query: 34  DFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL 93
           D +  +  G    LVG +GSGK+TL +ILAG            L   S        SG +
Sbjct: 309 DVSFDLREGETLGLVGESGSGKSTLARILAG------------LLPPS--------SGSI 348

Query: 94  SYLGGSWSKTVG--SAGEIPLQ----------------GDFSAEHMIFGVEGSDPVRRER 135
            + G     T G        +Q                GD  AE +     GS   RR R
Sbjct: 349 IFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRAR 408

Query: 136 LIELLD-IDLQ----WRM-HKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDL 189
           + ELL+ + L      R  H++S GQR+RV I   L    K+L+LDE    LDV  +  +
Sbjct: 409 VAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQV 468

Query: 190 LDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL 229
           L+  KD  E+ G T ++ +H    +   A  +A + DG +
Sbjct: 469 LNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRI 508

Length = 539

>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems

 Score = 71.1 bits (175), Expect = 6e-15
 Identities = 51/195 (26%), Positives = 77/195 (39%), Gaps = 34/195 (17%)

Query: 34  DFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL 93
           D +L I  G    L+G +GSGK+TLL+ +AG            L            SG +
Sbjct: 18  DVSLNIEAGEIVALLGPSGSGKSTLLRCIAG------------LEEPD--------SGSI 57

Query: 94  SYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSD 153
              G    + +    +           M+F        +   L   L + L+     +S 
Sbjct: 58  LIDG----EDLTDLEDELPPLRRRIG-MVF--------QDFALFPHLTV-LENIALGLSG 103

Query: 154 GQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDG 213
           GQ++RV +   L     VLLLDE T  LD + R ++    K    Q G T+V  TH  D 
Sbjct: 104 GQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDE 163

Query: 214 LETWATHLAYIQDGE 228
               A  +  ++DG+
Sbjct: 164 AARLADRVVVLRDGK 178

This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178

>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score = 73.8 bits (182), Expect = 8e-15
 Identities = 51/201 (25%), Positives = 83/201 (41%), Gaps = 7/201 (3%)

Query: 12  NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMV-GG 70
             I++     S+   D  P   D NL I  G    LVGA+G+GK+TLL +L G      G
Sbjct: 317 PPIEISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQG 376

Query: 71  RDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMIFGVEGSD 129
              V  ++              +S++  +     G+  E I L    +++  I       
Sbjct: 377 EIRVNGIDLRDLSPEAW--RKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQA 434

Query: 130 PVRRE-RLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMD 188
            +       + LD  +      +S GQ +R+ +   LL P  +LLLDE T  LD      
Sbjct: 435 GLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQI 494

Query: 189 LLDFFKDECEQRGATIVYATH 209
           +L   ++  +Q+  T++  TH
Sbjct: 495 ILQALQELAKQK--TVLVITH 513

Length = 559

>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 71.4 bits (176), Expect = 1e-14
 Identities = 54/198 (27%), Positives = 81/198 (40%), Gaps = 43/198 (21%)

Query: 30  PLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAG-------KHMVGGRDVVQVLNRSSF 82
            +  D NL +  G    ++G +G GK+TLL+++AG       + ++ GR V        +
Sbjct: 17  EVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGY 76

Query: 83  ---HDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEG---SDPVRRERL 136
               D  L            W  TV              +++  G+E    S    RER 
Sbjct: 77  VFQEDALL-----------PW-LTV-------------LDNVALGLELRGKSKAEARERA 111

Query: 137 IELLD-IDLQWRMHK----VSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLD 191
            ELL+ + L     K    +S G R+RV I   L    K+LLLDE    LD + R +L D
Sbjct: 112 KELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQD 171

Query: 192 FFKDECEQRGATIVYATH 209
                 E+   T++  TH
Sbjct: 172 ELLRLWEETRKTVLLVTH 189

Length = 248

>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

 Score = 73.0 bits (180), Expect = 2e-14
 Identities = 54/198 (27%), Positives = 89/198 (44%), Gaps = 33/198 (16%)

Query: 34  DFNLGISPGSRCLLVGANGSGKTTLLKIL-----------AGKHMVGGRDVVQVLNRSSF 82
           D +  + PG    +VG +GSGK+TL   L           +G+ ++ GRD++ +  R   
Sbjct: 27  DVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMR 86

Query: 83  H----DTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIE 138
                   ++    ++ L      T+G         D   E +    +GS    R+R +E
Sbjct: 87  KLRGKRIAMIFQDPMTSLNPVM--TIG---------DQIREALRLHGKGSRAEARKRAVE 135

Query: 139 LLDI------DLQWRM-HKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLD 191
           LL+       + + R  H++S G R+RV I M L    K+L+ DE T  LDV  +  +LD
Sbjct: 136 LLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILD 195

Query: 192 FFKDECEQRGATIVYATH 209
             KD   + G  +++ TH
Sbjct: 196 LLKDLQRELGMAVLFITH 213

Length = 539

>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

 Score = 71.9 bits (177), Expect = 2e-14
 Identities = 57/218 (26%), Positives = 99/218 (45%), Gaps = 46/218 (21%)

Query: 34  DFNLGISPGSRCLLVGANGSGKTTLLKILA-------GKHMVGGRDV--VQVLNRSSFHD 84
           D NL I  G   +L+G +G GK+TLL+++A       G+ ++ GRDV  +    R     
Sbjct: 21  DVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKR----- 75

Query: 85  TQLVCSGDLSYLGGSWS----KTVGSAGEIPLQGDFSAEHMIFG-----VEGSDPVRRER 135
                   ++ +  +++     TV              E++ FG     V  ++  +R +
Sbjct: 76  -------GIAMVFQNYALYPHMTV-------------YENIAFGLKLRGVPKAEIDKRVK 115

Query: 136 -LIELLDID--LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDF 192
            + +LL ++  L  +  ++S GQR+RV +   L+   KV LLDE   +LD   R+ +   
Sbjct: 116 EVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSE 175

Query: 193 FKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELR 230
            K   E+ G T +Y TH      T A  +  + DG ++
Sbjct: 176 IKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQ 213

Length = 338

>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 71.5 bits (176), Expect = 3e-14
 Identities = 59/232 (25%), Positives = 99/232 (42%), Gaps = 45/232 (19%)

Query: 21  FSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKIL-------AGKHMVGGRDV 73
           F   G        D +L I  G    ++G +G+GK+TLL+++       +G   V G+D+
Sbjct: 11  FGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDL 70

Query: 74  VQVLNRSS-----------FHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMI 122
              L+ +            F    L+            S+TV      PL+        +
Sbjct: 71  TA-LSEAELRQLRQKIGMIFQHFNLL-----------SSRTVFENVAFPLE--------L 110

Query: 123 FGVEGSDPVRRERLIELLDI-DLQWRMHK----VSDGQRRRVQICMGLLHPFKVLLLDEI 177
            GV  ++   ++R+ ELL++  L  +  +    +S GQ++RV I   L +  K+LL DE 
Sbjct: 111 AGVPKAE--IKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEA 168

Query: 178 TVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL 229
           T  LD      +L+  KD   + G TIV  TH  + ++     +A +  G L
Sbjct: 169 TSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRL 220

Length = 339

>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter

 Score = 69.6 bits (171), Expect = 3e-14
 Identities = 53/210 (25%), Positives = 96/210 (45%), Gaps = 35/210 (16%)

Query: 34  DFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL 93
           D +L +  G     +G NG+GKTT +KI+ G            L +          SG++
Sbjct: 18  DISLHVKKGEIYGFLGPNGAGKTTTMKIILG------------LIKPD--------SGEI 57

Query: 94  SYLGGSWSKT------VGSAGEIP-LQGDFSA-EHMIFGVEGSDPVRRERLIELLDI-DL 144
           ++ G S+ K       +G+  E P    + +A E++         +R++R+ E+LD+  L
Sbjct: 58  TFDGKSYQKNIEALRRIGALIEAPGFYPNLTARENLRLLARLLG-IRKKRIDEVLDVVGL 116

Query: 145 QWRMHK----VSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQR 200
           +    K     S G ++R+ I + LL    +L+LDE T  LD     +L +      +Q 
Sbjct: 117 KDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQ- 175

Query: 201 GATIVYATHIFDGLETWATHLAYIQDGELR 230
           G T++ ++H+   ++  A  +  I  G+L 
Sbjct: 176 GITVLISSHLLSEIQKVADRIGIINKGKLI 205

The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208

>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit

 Score = 71.9 bits (177), Expect = 4e-14
 Identities = 49/212 (23%), Positives = 81/212 (38%), Gaps = 32/212 (15%)

Query: 13  SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRD 72
           S++  G+  +Y G  + P     +  + PG R  LVG +G+GK+TLL +L G  +     
Sbjct: 321 SLEFSGVSVAYPG--RRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLG-FVDPTEG 377

Query: 73  VVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPL-------------QGDFSAE 119
            + V                      SW   +    + P              + D S  
Sbjct: 378 SIAVNGVPLADADA-----------DSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDA 426

Query: 120 HMIFGVE--GSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEI 177
            +   +E  G D      L + LD  +      +S GQ +R+ +    L    +LLLDE 
Sbjct: 427 EIREALERAGLDEFVAA-LPQGLDTPIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEP 485

Query: 178 TVDLDVVARMDLLDFFKDECEQRGATIVYATH 209
           T  LD     ++L+  +     +G T++  TH
Sbjct: 486 TAHLDAETEAEVLEALRALA--QGRTVLLVTH 515

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529

>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

 Score = 71.5 bits (176), Expect = 7e-14
 Identities = 52/212 (24%), Positives = 81/212 (38%), Gaps = 47/212 (22%)

Query: 21  FSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKIL-------AGKHMVGGRDV 73
           F Y G D PP+  D +L I PG +  +VG +GSGK+TLLK+L        G+ ++ G D+
Sbjct: 479 FRY-GPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDL 537

Query: 74  VQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRR 133
             +   S       V   D  +L   +S ++              E++  G   +     
Sbjct: 538 NDIDLASLRRQVGYV-LQD-PFL---FSGSI-------------RENIALGNPEATDEEI 579

Query: 134 ERLIELLDID-------------LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVD 180
               +L                 +      +S GQR+R+ +   LL   K+LLLDE T  
Sbjct: 580 IEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSA 639

Query: 181 LDVVAR---MDLLDFFKDECEQRGATIVYATH 209
           LD       +  L            T++   H
Sbjct: 640 LDPETEAIILQNLLQILQGR-----TVIIIAH 666

Length = 709

>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F

 Score = 67.1 bits (165), Expect = 8e-14
 Identities = 23/52 (44%), Positives = 34/52 (65%), Gaps = 3/52 (5%)

Query: 14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGK 65
          I++  +  +Y G     L  D +L I+PG R  LVG NG+GK+TLLK++AG+
Sbjct: 1  IELENLSKTYGGK---LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGE 49

Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144

>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit

 Score = 70.1 bits (172), Expect = 2e-13
 Identities = 54/209 (25%), Positives = 89/209 (42%), Gaps = 26/209 (12%)

Query: 13  SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILA-------GK 65
           ++++  +   Y G   PP+    +L + PG R  ++G +GSGK+TLL  LA       G+
Sbjct: 334 TLELRDLSAGYPGA--PPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGE 391

Query: 66  HMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGV 125
             + G  V   L++        VC+ D      +  + +  A     + D + E +   +
Sbjct: 392 VTLDGVPV-SSLDQDEVRRRVSVCAQDAHLFDTTVRENLRLA-----RPDATDEELWAAL 445

Query: 126 EGSDPVRRERLIELLDIDLQWRMH----KVSDGQRRRVQICMGLLHPFKVLLLDEITVDL 181
           E    V     +  L   L   +     ++S G+R+R+ +   LL    +LLLDE T  L
Sbjct: 446 ER---VGLADWLRALPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHL 502

Query: 182 DVVARMDLL-DFFKDECEQRGATIVYATH 209
           D     +LL D         G T+V  TH
Sbjct: 503 DAETADELLEDLLAAL---SGRTVVLITH 528

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530

>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

 Score = 69.2 bits (170), Expect = 3e-13
 Identities = 62/234 (26%), Positives = 94/234 (40%), Gaps = 23/234 (9%)

Query: 14  IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDV 73
           I +  +  +Y      PL  + +L ++PG R  LVG NG+GK+TLLKILAG+      +V
Sbjct: 4   ITLENLSLAYGDR---PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEV 60

Query: 74  -------VQVLNRSSFHDTQLVCSGDLSYLGGSWSK------TVGSAGEIPLQGDFSAEH 120
                  V  L++    D +      +    G   +         +    P     +   
Sbjct: 61  TRPKGLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELE 120

Query: 121 MIFGVEGSD--PVRRERLIELLDI-DLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEI 177
            +           R E  +  L   D    +  +S G RRRV +   LL    +LLLDE 
Sbjct: 121 ALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEP 180

Query: 178 TVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRR 231
           T  LD+ +   L D+ K      G  IV  +H    L+  ATH+  +  G+L  
Sbjct: 181 TNHLDLESIEWLEDYLKR---YPGTVIV-VSHDRYFLDNVATHILELDRGKLTP 230

Length = 530

>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score = 67.6 bits (166), Expect = 3e-13
 Identities = 52/216 (24%), Positives = 85/216 (39%), Gaps = 57/216 (26%)

Query: 21  FSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHM-------VGGRDV 73
            SY      P+  D +L +  G    L+G NG+GK+TLLK + G          + G+ V
Sbjct: 12  VSYGNR---PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPV 68

Query: 74  VQVLN---------RSSFHDT------QLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSA 118
            +            +SS   +       +V  G     G  W + +              
Sbjct: 69  RKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKG--WFRRLNKK----------- 115

Query: 119 EHMIFGVEGSDPVRRERLIELLD----IDLQWR-MHKVSDGQRRRVQICMGLLHPFKVLL 173
                         +E++ E L+     DL+ R + ++S GQ++RV +   L     +LL
Sbjct: 116 -------------DKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLL 162

Query: 174 LDEITVDLDVVARMDLLDFFKDECEQRGATIVYATH 209
           LDE    +DV  + ++ D  K E  Q G T++  TH
Sbjct: 163 LDEPFTGVDVAGQKEIYDLLK-ELRQEGKTVLMVTH 197

Length = 254

>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters

 Score = 66.7 bits (164), Expect = 4e-13
 Identities = 56/215 (26%), Positives = 83/215 (38%), Gaps = 44/215 (20%)

Query: 14  IKVCGMQFSYEGNDKP-PLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKH------ 66
           ++V  +  +Y G         D +L +  G    LVG +G GK+TLL+I+AG        
Sbjct: 1   LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60

Query: 67  -MVGGRDVVQVLNRSSF---HDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMI 122
            +V G  V        +    D  L            W  TV              +++ 
Sbjct: 61  VLVDGEPVTGPGPDRGYVFQQDALL-----------PW-LTV-------------LDNVA 95

Query: 123 FGVEG---SDPVRRERLIELLD-IDLQWRMHK----VSDGQRRRVQICMGLLHPFKVLLL 174
            G+E         RER  ELL+ + L    +     +S G R+RV +   L     VLLL
Sbjct: 96  LGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLL 155

Query: 175 DEITVDLDVVARMDLLDFFKDECEQRGATIVYATH 209
           DE    LD + R  L +   D   + G T++  TH
Sbjct: 156 DEPFSALDALTREQLQEELLDIWRETGKTVLLVTH 190

NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 66.7 bits (163), Expect = 9e-13
 Identities = 67/214 (31%), Positives = 100/214 (46%), Gaps = 25/214 (11%)

Query: 30  PLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVC 89
              +D NL I  GS    +G  GSGK+T++++L G H V  +  V+V       D  L+ 
Sbjct: 21  RALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLH-VPTQGSVRV-------DDTLIT 72

Query: 90  SGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMI---------FGV--EGSDPVRRERLIE 138
           S   +       K VG   + P    F  E ++         FGV  E ++ + RE+L  
Sbjct: 73  STSKNKDIKQIRKKVGLVFQFPESQLF-EETVLKDVAFGPQNFGVSQEEAEALAREKL-A 130

Query: 139 LLDIDLQWRMH---KVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKD 195
           L+ I          ++S GQ RRV I   L    K+L+LDE T  LD   R +L+  FK 
Sbjct: 131 LVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFK- 189

Query: 196 ECEQRGATIVYATHIFDGLETWATHLAYIQDGEL 229
           +  Q G TIV  TH+ D +  +A  +  ++ G+L
Sbjct: 190 KLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKL 223

Length = 280

>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group

 Score = 64.9 bits (159), Expect = 1e-12
 Identities = 50/197 (25%), Positives = 95/197 (48%), Gaps = 35/197 (17%)

Query: 31  LFYDFNLGISPGSRCLLVGANGSGKTTLLKILA-------GKHMVGGRDVVQVLNR--SS 81
           +  D NL I  G    ++G +GSGK+TLL I+        G+  + G++   + ++  S 
Sbjct: 13  ILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKKASK 72

Query: 82  FHDTQLVCSGDLSYLGGSW----SKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLI 137
           F   +L       YL  ++    ++TV    ++ L+            + S   +RE+  
Sbjct: 73  FRREKL------GYLFQNFALIENETVEENLDLGLKY----------KKLSKKEKREKKK 116

Query: 138 ELL-----DIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDF 192
           E L     ++ L+ +++++S G+++RV +   +L P  ++L DE T  LD   R ++LD 
Sbjct: 117 EALEKVGLNLKLKQKIYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDL 176

Query: 193 FKDECEQRGATIVYATH 209
             +  ++ G TI+  TH
Sbjct: 177 LLELNDE-GKTIIIVTH 192

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206

>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system

 Score = 65.4 bits (160), Expect = 1e-12
 Identities = 55/211 (26%), Positives = 95/211 (45%), Gaps = 21/211 (9%)

Query: 32  FYDFNLGIS---PGSRCLLVGANGSGKTTLLKILAG-KHMVGGRDVVQVLNRSSFHDTQL 87
             DF L I          + GA+G+GK+TLL+ +AG +   GG     VLN +   D++ 
Sbjct: 10  LPDFTLKIDFDLNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGT---IVLNGTVLFDSRK 66

Query: 88  VCSGDLSYLGGSWSKTVGSA-GEIPLQGDFS-AEHMIFGV----EGSDPVRRERLIELLD 141
               +L        + +G    +  L    +  E++ FG+       D +  + L++LL 
Sbjct: 67  --KINLP----PQQRKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLG 120

Query: 142 ID--LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQ 199
           +D  L     ++S G+++RV +   L    ++LLLDE    LD   R+ LL   K   + 
Sbjct: 121 LDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKN 180

Query: 200 RGATIVYATHIFDGLETWATHLAYIQDGELR 230
               +++ TH     E  A  +  ++DG L+
Sbjct: 181 LNIPVIFVTHDLSEAEYLADRIVVMEDGRLQ 211

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214

>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters

 Score = 64.9 bits (159), Expect = 1e-12
 Identities = 45/210 (21%), Positives = 79/210 (37%), Gaps = 47/210 (22%)

Query: 21  FSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRS 80
            SY      P+  D +  + PG    +VG NG+GK+TLLK + G                
Sbjct: 7   VSY---GGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILG---------------- 47

Query: 81  SFHDTQLV--CSGDLSYLGGSWSKTVGSAGEIPLQGDFSAE---------------HMIF 123
                 L+   SG +   G    K     G +P +     +               H   
Sbjct: 48  ------LLKPTSGSIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGL 101

Query: 124 GVEGSDPVRR--ERLIELLDID--LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITV 179
               S   +   +  +E + +      ++ ++S GQ++RV +   L+    +LLLDE   
Sbjct: 102 FRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFA 161

Query: 180 DLDVVARMDLLDFFKDECEQRGATIVYATH 209
            +D   + D+ +  ++   + G TI+  TH
Sbjct: 162 GVDPKTQEDIYELLRELR-REGMTILVVTH 190

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213

>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

 Score = 64.3 bits (157), Expect = 3e-12
 Identities = 56/218 (25%), Positives = 107/218 (49%), Gaps = 31/218 (14%)

Query: 34  DFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL 93
           + +L +   S   L+G NG+GK+TLLK++ G           +L  +         SG++
Sbjct: 18  NISLTVPKNSVYGLLGPNGAGKSTLLKMITG-----------ILRPT---------SGEI 57

Query: 94  SYLGGSWS----KTVGSAGEIP-LQGDFSA-EHM--IFGVEGSDPVRRERLIELLDI--D 143
            + G  W+      +GS  E P L  + +A E++     + G    R + ++ ++D+   
Sbjct: 58  IFDGHPWTRKDLHKIGSLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNT 117

Query: 144 LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGAT 203
            + +  + S G ++R+ I + LL+  K+L+LDE T  LD +   +L +  +   EQ G T
Sbjct: 118 GKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQ-GIT 176

Query: 204 IVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDEL 241
           ++ ++HI   ++  A H+  I +G L    K+ + + L
Sbjct: 177 VILSSHILSEVQQLADHIGIISEGVLGYQGKINKSENL 214

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223

>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters

 Score = 63.2 bits (155), Expect = 3e-12
 Identities = 50/215 (23%), Positives = 79/215 (36%), Gaps = 81/215 (37%)

Query: 14  IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDV 73
           I+   + FSY G  KP L  D +L I PG +  +VG +GSGK+TL               
Sbjct: 1   IEFKNVSFSYPGRPKPVLK-DVSLTIKPGEKVAIVGPSGSGKSTL--------------- 44

Query: 74  VQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRR 133
           +++L R   +D                      +GEI + G                   
Sbjct: 45  LKLLLR--LYDPT--------------------SGEILIDG------------------- 63

Query: 134 ERLIELLDIDLQWRMHKV-------------------SDGQRRRVQICMGLLHPFKVLLL 174
              ++L D+DL+     +                   S GQR+R+ I   LL    +L+L
Sbjct: 64  ---VDLRDLDLESLRKNIAYVPQDPFLFSGTIRENILSGGQRQRIAIARALLRDPPILIL 120

Query: 175 DEITVDLDVVARMDLLDFFKDECEQRGATIVYATH 209
           DE T  LD      +L+  +   + +  T++   H
Sbjct: 121 DEATSALDPETEALILEALRALAKGK--TVIVIAH 153

The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171

>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter

 Score = 63.8 bits (156), Expect = 6e-12
 Identities = 58/229 (25%), Positives = 100/229 (43%), Gaps = 45/229 (19%)

Query: 24  EGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKIL-------AGKHMVGGRDVVQV 76
           +   K     D +L +  G    ++G +G+GK+TL++ +       +G  +V G D+  +
Sbjct: 13  DTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLL 72

Query: 77  LNRSS----------FHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVE 126
             +            F    L+            S+TV     +PL+        I GV 
Sbjct: 73  SGKELRKARRRIGMIFQHFNLL-----------SSRTVFENVALPLE--------IAGVP 113

Query: 127 GSDPVRRERLIELLD-IDLQWRMHK----VSDGQRRRVQICMGL-LHPFKVLLLDEITVD 180
            ++    ER++ELL+ + L+ +       +S GQ++RV I   L  +P KVLL DE T  
Sbjct: 114 KAE--IEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNP-KVLLCDEATSA 170

Query: 181 LDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL 229
           LD      +L   +D   + G TIV  TH  + ++     +A ++ GE+
Sbjct: 171 LDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEV 219

MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233

>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit

 Score = 64.3 bits (157), Expect = 8e-12
 Identities = 55/213 (25%), Positives = 87/213 (40%), Gaps = 38/213 (17%)

Query: 34  DFNLGISPGSRCLLVGANGSGKTTLLKIL-------AGKHMVGGRDVVQVLNRSSFHDTQ 86
             N  +  G     +G NG+GKTT +++L       +G   V G DVV+        + +
Sbjct: 11  GVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR--------EPR 62

Query: 87  LVCSGDLSYLGGSWSKTVGSAGEIP-LQGDFSAEH---MIFGVEG-SDPVRRERLIELLD 141
            V             +++G   +   +  D +      M+  + G       ER  ELL+
Sbjct: 63  KV------------RRSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLE 110

Query: 142 -IDL-QWRMHKV---SDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDE 196
             +L +     V   S G RRR+ I   L+H   VL LDE T  LD   R  + D+ +  
Sbjct: 111 LFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRAL 170

Query: 197 CEQRGATIVYATHIFDGLETWATHLAYIQDGEL 229
            E+ G TI+  TH  +  +     +A I  G +
Sbjct: 171 KEE-GVTILLTTHYMEEADKLCDRIAIIDHGRI 202

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302

>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

 Score = 64.2 bits (157), Expect = 9e-12
 Identities = 52/193 (26%), Positives = 83/193 (43%), Gaps = 37/193 (19%)

Query: 34  DFNLGISPGSRCLLVGANGSGKTTLLKILAG-------KHMVGGRDVVQVLNRSSFH--D 84
           D +L I  G    L+G +G GKTTLL+++AG       + ++ G D+  V          
Sbjct: 23  DISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDV----PPEKRP 78

Query: 85  TQLVCSGDLSY-----LGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRR-ERLIE 138
             +V     SY     +      TV       L        +   ++ ++   R E  +E
Sbjct: 79  IGMVFQ---SYALFPHM------TVEENVAFGL-------KVRKKLKKAEIKARVEEALE 122

Query: 139 LLDID--LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDE 196
           L+ ++     + H++S GQ++RV +   L+   KVLLLDE    LD   R  +    K+ 
Sbjct: 123 LVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKEL 182

Query: 197 CEQRGATIVYATH 209
             + G T VY TH
Sbjct: 183 QRELGITFVYVTH 195

Length = 352

>gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

 Score = 63.0 bits (154), Expect = 1e-11
 Identities = 57/227 (25%), Positives = 100/227 (44%), Gaps = 44/227 (19%)

Query: 29  PPLFYDFNLGISPGSRCLLVGANGSGKTTLLKIL-------AGKHMVGGRDVVQVLNRS- 80
                D +  I  G    L G +G+GK+TLLK++        GK +V G D+ ++  R  
Sbjct: 15  REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREI 74

Query: 81  ---------SFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPV 131
                     F D +L+             +TV     +PL+        + G    +  
Sbjct: 75  PFLRRQIGVVFQDFRLL-----------PDRTVYENVALPLR--------VIGKPPRE-- 113

Query: 132 RRERLIELLD-IDLQWRMH----KVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVAR 186
            R R+ E+LD + L+ +      ++S G+++RV I   +++   VLL DE T +LD    
Sbjct: 114 IRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLS 173

Query: 187 MDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAE 233
            +++  F+ E  + G T++ ATH  + +      +  ++DG L R E
Sbjct: 174 WEIMRLFE-EINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDE 219

Length = 223

>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 63.0 bits (154), Expect = 1e-11
 Identities = 53/231 (22%), Positives = 91/231 (39%), Gaps = 39/231 (16%)

Query: 34  DFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDV----VQVLNRSS-------- 81
           D NL I+ G    ++G +G+GK+TLL+ L G       ++    VQ+             
Sbjct: 22  DVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRR 81

Query: 82  -----FHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERL 136
                F    LV    LS         V     +   G  S    +FG+      + ++ 
Sbjct: 82  DIGMIFQQFNLV--PRLS---------VLENVLLGRLGYTSTWRSLFGL----FSKEDKA 126

Query: 137 IEL-----LDI--DLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDL 189
             L     + I      R   +S GQ++RV I   L+   K++L DE    LD  +   +
Sbjct: 127 QALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKV 186

Query: 190 LDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDE 240
           +D  KD  ++ G T++   H  D  + +A  +  ++ G +      +EL +
Sbjct: 187 MDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASELTD 237

Length = 258

>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system

 Score = 62.6 bits (153), Expect = 1e-11
 Identities = 57/228 (25%), Positives = 92/228 (40%), Gaps = 57/228 (25%)

Query: 14  IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKIL-------AGKH 66
           I+V  +  +Y  N K  L  D +L I+PG    L+G +G+GK+TLL+ L       +G  
Sbjct: 1   IEVENLSKTY-PNGKKAL-KDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSV 58

Query: 67  MVGGRDVVQVLNRSS-----------FHDTQL---------VCSGDLSYLGGSWSKTVGS 106
           ++ G D +  L   +           F    L         V SG L       S     
Sbjct: 59  LIDGTD-INKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRS----- 112

Query: 107 AGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLD----IDLQW-RMHKVSDGQRRRVQI 161
                L G F  E             ++R +  L+    +D  + R  ++S GQ++RV I
Sbjct: 113 -----LFGLFPKEE------------KQRALAALERVGLLDKAYQRADQLSGGQQQRVAI 155

Query: 162 CMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATH 209
              L+   K++L DE    LD  +   ++D  K    + G T++ + H
Sbjct: 156 ARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLH 203

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241

>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK

 Score = 61.5 bits (150), Expect = 2e-11
 Identities = 58/212 (27%), Positives = 96/212 (45%), Gaps = 34/212 (16%)

Query: 34  DFNLGISPGSRCLLVGANGSGKTTLLKILAG-------KHMVGGRDVVQVLNRSSFHDTQ 86
           D NL I+ G   +L+G +G GKTT L+++AG       +  +GGRDV  +       D  
Sbjct: 18  DLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDL--PPKDRDIA 75

Query: 87  LVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRE------RLIELL 140
           +V      Y       TV              +++ FG++     + E       + ELL
Sbjct: 76  MVFQNYALYP----HMTV-------------YDNIAFGLKLRKVPKDEIDERVREVAELL 118

Query: 141 DID--LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECE 198
            I+  L  +  ++S GQR+RV +   ++   KV L+DE   +LD   R+ +    K   +
Sbjct: 119 QIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQ 178

Query: 199 QRGATIVYATHIFDGLETWATHLAYIQDGELR 230
           + G T +Y TH      T A  +A + DG+++
Sbjct: 179 RLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQ 210

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213

>gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

 Score = 61.5 bits (150), Expect = 3e-11
 Identities = 48/188 (25%), Positives = 69/188 (36%), Gaps = 21/188 (11%)

Query: 30  PLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAG-KHMVGGRDVVQVLNRSSFHDTQLV 88
            LF D +  ++ G    + G NG+GKTTLL+ILAG      G    Q     +  ++   
Sbjct: 16  TLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESY-- 73

Query: 89  CSGDLSYLG-GSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDI-DLQW 146
               L YLG     KT  +A           E++ F            + E L    L  
Sbjct: 74  -HQALLYLGHQPGIKTELTA----------LENLHFWQRFHGSGNAATIWEALAQVGLAG 122

Query: 147 RMHK----VSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGA 202
                   +S GQ+RRV +    L P  + +LDE    LD      L          +G 
Sbjct: 123 LEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHA-AQGG 181

Query: 203 TIVYATHI 210
            ++  TH 
Sbjct: 182 IVLLTTHQ 189

Length = 209

>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family

 Score = 60.8 bits (148), Expect = 6e-11
 Identities = 65/247 (26%), Positives = 103/247 (41%), Gaps = 58/247 (23%)

Query: 14  IKVCGMQFSY-EGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRD 72
           I +  +   Y  G+ +  + +D NL I+PG   +L G +GSGKTTLL       ++GG  
Sbjct: 2   ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLT------LIGGLR 55

Query: 73  VVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIF--------- 123
            VQ               G L  LG    + +  A E  L         IF         
Sbjct: 56  SVQ--------------EGSLKVLG----QELYGASEKELVQLRRNIGYIFQAHNLLGFL 97

Query: 124 --------GVEGSDPV----RRERLIELLD-IDLQWRMHK----VSDGQRRRVQICMGLL 166
                    +E    +     RER   +L+ + L   +      +S GQ++RV I   L+
Sbjct: 98  TARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALV 157

Query: 167 HPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATH---IFDGLETWATHLAY 223
           H  K++L DE T  LD  +  D+++  +    ++G TI+  TH   I D     A  + +
Sbjct: 158 HRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILD----VADRIVH 213

Query: 224 IQDGELR 230
           ++DG+L 
Sbjct: 214 MEDGKLL 220

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220

>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit

 Score = 60.1 bits (146), Expect = 6e-11
 Identities = 51/204 (25%), Positives = 81/204 (39%), Gaps = 36/204 (17%)

Query: 27  DKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAG-------KHMVGGRDVVQVLNR 79
             P +    N     G    L+GANG+GK+TLL  L G         ++ G  +    +R
Sbjct: 3   GGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDY--SR 60

Query: 80  SSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSA---EHMIFG---VEGSDPVRR 133
               +                 + VG   + P    F+A   + + FG   +  S+    
Sbjct: 61  KGLLE---------------RRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVE 105

Query: 134 ERL---IELLDID-LQWR-MHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMD 188
            R+   +  +    L+ R  H +S G+++RV I   +     VLLLDE T  LD   R  
Sbjct: 106 RRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQ 165

Query: 189 LLDFFKDECEQRGATIVYATHIFD 212
           +L   +    + G T+V +TH  D
Sbjct: 166 MLAILRRLRAE-GMTVVISTHDVD 188

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190

>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter

 Score = 60.8 bits (148), Expect = 7e-11
 Identities = 56/227 (24%), Positives = 92/227 (40%), Gaps = 46/227 (20%)

Query: 26  NDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKIL-------AGKHMVGGRDVVQVLN 78
                   + NL I+ G   +L+G +GSGKTT +K++       +G+  + G D+ +   
Sbjct: 11  GGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQ-- 68

Query: 79  RSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHM--------IFGVEG-SD 129
                        D   L       +   G  P        HM        +  +     
Sbjct: 69  -------------DPVELRRKIGYVIQQIGLFP--------HMTVEENIALVPKLLKWPK 107

Query: 130 PVRRER---LIELLDID----LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLD 182
              RER   L+ L+ +D         H++S GQ++RV +   L     +LL+DE    LD
Sbjct: 108 EKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALD 167

Query: 183 VVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL 229
            + R  L + FK   ++ G TIV+ TH  D     A  +A +++GE+
Sbjct: 168 PITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEI 214

OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242

>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein

 Score = 61.4 bits (149), Expect = 9e-11
 Identities = 56/228 (24%), Positives = 101/228 (44%), Gaps = 23/228 (10%)

Query: 23  YEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKIL-------AGKHMVGGRDVVQ 75
           ++G        + +L +  G    ++GA+G+GK+TL++ +       +G  +V G+D+  
Sbjct: 12  HQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTT 71

Query: 76  VLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRER 135
           + N       + +      +     S+TV     +PL+ D + +  I          + +
Sbjct: 72  LSNSELTKARRQI-GMIFQHFNLLSSRTVFGNVALPLELDNTPKDEI----------KRK 120

Query: 136 LIELLDIDLQWRMHK-----VSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLL 190
           + ELL +      H      +S GQ++RV I   L    KVLL DE T  LD      +L
Sbjct: 121 VTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSIL 180

Query: 191 DFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL 238
           +  K+   + G TI+  TH  D ++     +A I +GEL     ++E+
Sbjct: 181 ELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEI 228

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343

>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional

 Score = 59.4 bits (145), Expect = 1e-10
 Identities = 49/193 (25%), Positives = 78/193 (40%), Gaps = 33/193 (17%)

Query: 30  PLFYDFNLGISPGSRCLLVGANGSGKTTLLKILA-------GKHMVGGRDVVQVLNRSSF 82
            LF   +  ++ G    + G NG+GKT+LL+ILA       G+ +  G  + +   R  +
Sbjct: 15  ILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQ--RDEY 72

Query: 83  HDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSA-EHMIFGVEGSDPVRRERLIELLD 141
           H        DL YLG          G   ++ + +A E++ F      P   E L E L 
Sbjct: 73  HQ-------DLLYLG-------HQPG---IKTELTALENLRFYQRLHGPGDDEALWEALA 115

Query: 142 -IDLQWRM----HKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDE 196
            + L         ++S GQ+RRV +    L    + +LDE    +D      L       
Sbjct: 116 QVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQH 175

Query: 197 CEQRGATIVYATH 209
            E +G  ++  TH
Sbjct: 176 AE-QGGMVILTTH 187

Length = 204

>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C

 Score = 58.9 bits (143), Expect = 1e-10
 Identities = 43/197 (21%), Positives = 80/197 (40%), Gaps = 41/197 (20%)

Query: 19  MQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLN 78
           + FSY   ++  +  + +L +  G +  L+G +GSGK+TLL++L G             +
Sbjct: 6   VSFSYPEQEQQ-VLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTG-------------D 51

Query: 79  RSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIE 138
                    +    +S L  + S  +    + P        ++      ++  RR     
Sbjct: 52  LKPQQGEITLDGVPVSDLEKALSSLISVLNQRP--------YLFDTTLRNNLGRR----- 98

Query: 139 LLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECE 198
                        S G+R+R+ +   LL    ++LLDE TV LD +    LL    +  +
Sbjct: 99  ------------FSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLK 146

Query: 199 QRGATIVYATHIFDGLE 215
            +  T+++ TH   G+E
Sbjct: 147 DK--TLIWITHHLTGIE 161

The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178

>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

 Score = 60.3 bits (147), Expect = 2e-10
 Identities = 55/221 (24%), Positives = 87/221 (39%), Gaps = 76/221 (34%)

Query: 34  DFNLGISPGSRCLLVGANGSGKTTLLK------------ILAGKHMVGGRDVVQVLNRSS 81
             +  +  G    +VG +GSGK+ L K            I+ G+ +  G+D++      S
Sbjct: 23  GVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLL------S 76

Query: 82  FHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIF------------------ 123
             + +L         G    K +                MIF                  
Sbjct: 77  LSEKEL-----RKIRG----KEIA---------------MIFQDPMTSLNPVMTIGDQIA 112

Query: 124 ------GVEGSDPVRRERLIELLDI----DLQWRM----HKVSDGQRRRVQICMGL-LHP 168
                 G   S    +ER IELL++    D + R+    H++S G R+RV I M L L+P
Sbjct: 113 EVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNP 172

Query: 169 FKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATH 209
            K+L+ DE T  LDV  +  +LD  K+   ++G  ++  TH
Sbjct: 173 -KLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITH 212

Length = 316

>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 59.7 bits (144), Expect = 2e-10
 Identities = 65/236 (27%), Positives = 110/236 (46%), Gaps = 35/236 (14%)

Query: 14  IKVCGMQFSYEGND--KPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAG-----KH 66
           IK   + ++Y+ N        +D +L +  GS   L+G  GSGK+TLL+ L G     + 
Sbjct: 2   IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEG 61

Query: 67  MVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIP--------LQGDFSA 118
            V   D+V V + S   + + V             K VG   + P        +  D + 
Sbjct: 62  KVTVGDIV-VSSTSKQKEIKPV------------RKKVGVVFQFPESQLFEETVLKDVAF 108

Query: 119 EHMIFGV--EGSDPVRRERLIELLDIDLQ-WRMH--KVSDGQRRRVQICMGLLHPFKVLL 173
               FG+  E ++ +  E+L E++ +  + W     ++S GQ RRV I   L    +VL+
Sbjct: 109 GPQNFGIPKEKAEKIAAEKL-EMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLV 167

Query: 174 LDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL 229
           LDE T  LD  AR++++  F +   Q G T+V  TH+ D +  +A ++  ++ G +
Sbjct: 168 LDEPTAGLDPKARIEMMQLF-ESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHI 222

Length = 288

>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional

 Score = 58.7 bits (143), Expect = 2e-10
 Identities = 53/188 (28%), Positives = 79/188 (42%), Gaps = 14/188 (7%)

Query: 30  PLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVC 89
            LF   +  ++ G   +L G NGSGKTTLL+++AG        +   L+     D     
Sbjct: 16  VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTI--KLDGGDIDDPD--V 71

Query: 90  SGDLSYLGGSWS-KTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDI-DLQWR 147
           +    YLG   + K   +  E  L+  F A     G E  D       + L  +  L + 
Sbjct: 72  AEACHYLGHRNAMKPALTVAEN-LE--FWAA--FLGGEELDIAAALEAVGLAPLAHLPFG 126

Query: 148 MHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYA 207
              +S GQ+RRV +   L+    + +LDE T  LD  A     +  +    Q G  ++ A
Sbjct: 127 Y--LSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQ-GGIVIAA 183

Query: 208 THIFDGLE 215
           THI  GL 
Sbjct: 184 THIPLGLP 191

Length = 207

>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE

 Score = 58.8 bits (143), Expect = 2e-10
 Identities = 54/211 (25%), Positives = 89/211 (42%), Gaps = 46/211 (21%)

Query: 21  FSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHM-------VGGRDV 73
            +Y G       +D +L I  G    L G +G+GKTTLLK+L G          + G DV
Sbjct: 9   KAYPGG--VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDV 66

Query: 74  VQVLNRS----------SFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIF 123
            ++  R            F D +L+             +TV     +PL+        + 
Sbjct: 67  NRLRGRQLPLLRRRIGVVFQDFRLL-----------PDRTVYENVALPLE--------VR 107

Query: 124 GVEGSDPVRR-ERLIELLDIDLQWRMH----KVSDGQRRRVQICMGLLHPFKVLLLDEIT 178
           G +  +  RR    +    + L+ +      ++S G+++RV I   +++   +LL DE T
Sbjct: 108 GKKEREIQRRVGAALRQ--VGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPT 165

Query: 179 VDLDVVARMDLLDFFKDECEQRGATIVYATH 209
            +LD      +LD  K    +RG T++ ATH
Sbjct: 166 GNLDPDLSERILDLLK-RLNKRGTTVIVATH 195

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214

>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein

 Score = 59.7 bits (145), Expect = 3e-10
 Identities = 52/214 (24%), Positives = 95/214 (44%), Gaps = 18/214 (8%)

Query: 34  DFNLGISPGSRCLLVGANGSGKTTLLKILAG-KHMVGGRDVV--QVLNRSSFHDTQLVCS 90
           D +  +       + G +GSGKTTL++++AG      G  V+  + L  S     + +  
Sbjct: 15  DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSR----KGIF- 69

Query: 91  GDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDP----VRRERLIELLDID--L 144
             L             A   P        ++ +G++ + P    +  ER+IELL I   L
Sbjct: 70  --LPPEKRRIGYVFQEARLFPHLS--VRGNLRYGMKRARPSERRISFERVIELLGIGHLL 125

Query: 145 QWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATI 204
                ++S G+++RV I   LL   ++LL+DE    LD   + ++L + +    + G  I
Sbjct: 126 GRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPI 185

Query: 205 VYATHIFDGLETWATHLAYIQDGELRRAEKLAEL 238
           +Y +H    +   A  +  ++DG +  A  +AE+
Sbjct: 186 LYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEV 219

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354

>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional

 Score = 58.5 bits (141), Expect = 5e-10
 Identities = 49/209 (23%), Positives = 91/209 (43%), Gaps = 24/209 (11%)

Query: 34  DFNLGISPGSRCLLVGANGSGKTTLLKILA-------GKHMVGGRDVVQ-----VLNRSS 81
           +  + I  G    ++G NG GK+TLL+ L+       G   + G  +       V  R  
Sbjct: 25  NLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIG 84

Query: 82  FHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRE-RLIELL 140
                    GD++       + + + G  P Q  F+     +  E  + V +  +   + 
Sbjct: 85  LLAQNATTPGDITV------QELVARGRYPHQPLFTR----WRKEDEEAVTKAMQATGIT 134

Query: 141 DIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQR 200
            +  Q  +  +S GQR+R  I M L     ++LLDE T  LD+  ++DLL+   +   ++
Sbjct: 135 HLADQ-SVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREK 193

Query: 201 GATIVYATHIFDGLETWATHLAYIQDGEL 229
           G T+    H  +    +A+HL  +++G++
Sbjct: 194 GYTLAAVLHDLNQACRYASHLIALREGKI 222

Length = 265

>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

 Score = 58.4 bits (142), Expect = 5e-10
 Identities = 49/183 (26%), Positives = 78/183 (42%), Gaps = 52/183 (28%)

Query: 34  DFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL 93
             +  I  G    LVG +G GK+TL +++ G            L   +        SG++
Sbjct: 31  GVSFSIKEGETLGLVGESGCGKSTLGRLILG------------LEEPT--------SGEI 70

Query: 94  SYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDI------DLQWR 147
            + G   +K              S E            RRER++ELL+        L   
Sbjct: 71  LFEGKDITK-------------LSKEE-----------RRERVLELLEKVGLPEEFLYRY 106

Query: 148 MHKVSDGQRRRVQICMGL-LHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVY 206
            H++S GQR+R+ I   L L+P K+++ DE    LDV  +  +L+  KD  E+ G T ++
Sbjct: 107 PHELSGGQRQRIGIARALALNP-KLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLF 165

Query: 207 ATH 209
            +H
Sbjct: 166 ISH 168

Length = 268

>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional

 Score = 58.3 bits (141), Expect = 6e-10
 Identities = 54/207 (26%), Positives = 90/207 (43%), Gaps = 14/207 (6%)

Query: 31  LFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVV---QVL---NRSSFHD 84
           L +  +L    G    L+G NGSGK+TLLK+L         +++   Q L   +  +F  
Sbjct: 26  LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFAR 85

Query: 85  TQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDID- 143
                   L    G   + + + G  P  G        FG    D  + E  I L+ +  
Sbjct: 86  KVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGR----FGAA--DREKVEEAISLVGLKP 139

Query: 144 LQWRM-HKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGA 202
           L  R+   +S G+R+R  I M +    + LLLDE T  LD+  ++D+L       ++RG 
Sbjct: 140 LAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGL 199

Query: 203 TIVYATHIFDGLETWATHLAYIQDGEL 229
           T++   H  +    +  +L  ++ GE+
Sbjct: 200 TVIAVLHDINMAARYCDYLVALRGGEM 226

Length = 265

>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional

 Score = 57.7 bits (140), Expect = 8e-10
 Identities = 58/215 (26%), Positives = 92/215 (42%), Gaps = 37/215 (17%)

Query: 34  DFNLGISPGSRCLLVGANGSGKTTLLKILA-------GKHMVGGRDVVQVLNRSSFHDTQ 86
           D +L +  G    L+G NG GK+TLLK  A       G   +G + +      S     Q
Sbjct: 20  DLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPI------SMLSSRQ 73

Query: 87  LVCSGDLSYL--------GGSWSKTV--GSAGEIPLQGDFSAEHMIFGVEGSDPVRRERL 136
           L  +  L+ L        G +  + V  G +  + L G  SAE         D  R  + 
Sbjct: 74  L--ARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAE---------DNARVNQA 122

Query: 137 IELLDID--LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFK 194
           +E   I+     R+  +S GQR+R  + M L     V+LLDE T  LD+  +++L+   +
Sbjct: 123 MEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMR 182

Query: 195 DECEQRGATIVYATHIFDGLETWATHLAYIQDGEL 229
            E   +G T+V   H  +    +  HL  + +G +
Sbjct: 183 -ELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHV 216

Length = 255

>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

 Score = 59.0 bits (143), Expect = 8e-10
 Identities = 55/224 (24%), Positives = 90/224 (40%), Gaps = 42/224 (18%)

Query: 6   NENEKLNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKIL--- 62
              + + SI+   + FSY G  K P+  D +  I PG +  +VG +GSGK+TL+K+L   
Sbjct: 321 PLKDTIGSIEFENVSFSYPG--KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRL 378

Query: 63  ----AGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSA 118
               +G+ ++ G D+  + +  S      + S D     G    T+              
Sbjct: 379 YDPTSGEILIDGIDIRDI-SLDSLRKRIGIVSQDPLLFSG----TI-------------R 420

Query: 119 EHMIFGVEGSDP--VRR-----------ERLIELLDIDLQWRMHKVSDGQRRRVQICMGL 165
           E++  G   +    +               L +  D  +  R   +S GQR+R+ I   L
Sbjct: 421 ENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARAL 480

Query: 166 LHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATH 209
           L    +L+LDE T  LD      + D  K   + R  T +   H
Sbjct: 481 LRNPPILILDEATSALDTETEALIQDALKKLLKGR--TTLIIAH 522

Length = 567

>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system

 Score = 57.1 bits (138), Expect = 9e-10
 Identities = 51/207 (24%), Positives = 87/207 (42%), Gaps = 30/207 (14%)

Query: 34  DFNLGISPGSRCLLVGANGSGKTTLLKILA-------GKHMVGGRDV--VQVLNR---SS 81
            F+L  + G    +VG +GSGK+TLL ++A       G+ ++ G DV      +R     
Sbjct: 16  HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSML 75

Query: 82  FHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQG-DFSAEHMIFGVEGSDPVRRERLIELL 140
           F +  L      ++L    +  +G +  + L   D  A  +     G   + +    EL 
Sbjct: 76  FQENNL-----FAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGEL- 129

Query: 141 DIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQR 200
                      S G+R+RV +   L+    VLLLDE    LD   R ++LD   D   + 
Sbjct: 130 -----------SGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAET 178

Query: 201 GATIVYATHIFDGLETWATHLAYIQDG 227
             T++  TH  +  +  A  + ++ +G
Sbjct: 179 KMTVLMVTHQPEDAKRLAQRVVFLDNG 205

Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211

>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 57.8 bits (140), Expect = 1e-09
 Identities = 60/217 (27%), Positives = 95/217 (43%), Gaps = 28/217 (12%)

Query: 5   MNENEKLNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAG 64
           M +    + I    + F Y+  D      D +  I  G    +VG NGSGK+T+ K+   
Sbjct: 1   MEDKN--SIIVFKNVSFQYQS-DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKL--- 54

Query: 65  KHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIP---LQGDFSAEHM 121
             M+G   + +V +   F++ Q +   +   L     K +G   + P     G      +
Sbjct: 55  --MIG---IEKVKSGEIFYNNQAITDDNFEKL----RKHIGIVFQNPDNQFVGSIVKYDV 105

Query: 122 IFGVEGS----DPVRRERLIELLDIDLQWRM----HKVSDGQRRRVQICMGL-LHPFKVL 172
            FG+E      D + R     L  +D+  R     + +S GQ++RV I   L L+P  V+
Sbjct: 106 AFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNP-SVI 164

Query: 173 LLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATH 209
           +LDE T  LD  AR +LLD  +    +   TI+  TH
Sbjct: 165 ILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITH 201

Length = 269

>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system

 Score = 55.9 bits (136), Expect = 1e-09
 Identities = 40/178 (22%), Positives = 67/178 (37%), Gaps = 55/178 (30%)

Query: 36  NLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSY 95
           +L +  G    L+G NG+GK+TL+KIL+G +     D                       
Sbjct: 20  SLSVRRGEVHALLGENGAGKSTLMKILSGLYK---PD----------------------- 53

Query: 96  LGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERL-IELLDIDLQWRMHKVSDG 154
                      +GEI + G          V  + P    R  I ++        +++S G
Sbjct: 54  -----------SGEILVDGK--------EVSFASPRDARRAGIAMV--------YQLSVG 86

Query: 155 QRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFD 212
           +R+ V+I   L    ++L+LDE T  L       L    +    Q G  +++ +H  D
Sbjct: 87  ERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQ-GVAVIFISHRLD 143

This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163

>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional

 Score = 58.6 bits (142), Expect = 1e-09
 Identities = 74/305 (24%), Positives = 124/305 (40%), Gaps = 64/305 (20%)

Query: 14  IKVCGMQFSYE-GNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKIL-------AGK 65
           +++  ++ SY  G ++  +    +L I  G    +VGA+GSGK+TL+ IL       +G 
Sbjct: 5   LELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGT 64

Query: 66  HMVGGRDVVQV-------LNRSSF----HDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQG 114
           + V G+DV  +       L R  F        L     LS+L      T     E+P   
Sbjct: 65  YRVAGQDVATLDADALAQLRREHFGFIFQRYHL-----LSHL------TAAQNVEVPA-- 111

Query: 115 DFSAEHMIFGVEGSDPVRRERLIELLD-IDLQWRMH----KVSDGQRRRVQICMGLLHPF 169
                 +  G+E     R  R  ELL  + L+ R+     ++S GQ++RV I   L++  
Sbjct: 112 ------VYAGLERKQ--RLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGG 163

Query: 170 KVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL 229
           +V+L DE T  LD  +  +++       ++ G T++  TH    +   A  +  I+DGE+
Sbjct: 164 QVILADEPTGALDSHSGEEVMAILHQLRDR-GHTVIIVTHDPQ-VAAQAERVIEIRDGEI 221

Query: 230 RRAEKLAELDELRNSTNLLSVVESWLRSETKLEKKRPVDPPKQVQKTSPFGSSPFMSSRH 289
                      +RN             +     +          Q  S F  +  M+ R 
Sbjct: 222 -----------VRNPPAQEK------VNVAGGTEPVVNTASGWRQFVSGFREALTMAWRA 264

Query: 290 MAYNR 294
           MA N+
Sbjct: 265 MAANK 269

Length = 648

>gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA

 Score = 56.6 bits (137), Expect = 1e-09
 Identities = 45/184 (24%), Positives = 67/184 (36%), Gaps = 24/184 (13%)

Query: 34  DFNLGISPGSRCLLVGANGSGKTTLLKILAG-KHMVGGRDVVQVLNRSSFHDTQLVCSGD 92
            F L    G    + G NG GKTTLL+ILAG      G                      
Sbjct: 20  SFTLN--AGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWN--------------GTA 63

Query: 93  LSYLGGSWSKTVGSAGEIP-LQGDFSA-EHMIFGVEGSDPVRRERLIELLDIDLQWR--- 147
           L+       + +   G +P L+ + SA E++ F        +R     L  + L      
Sbjct: 64  LAEQRDEPHRNILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDL 123

Query: 148 -MHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVY 206
              ++S GQ+RR+ +    L    + +LDE T  LD      L    +     RG  ++ 
Sbjct: 124 PAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHL-ARGGIVLL 182

Query: 207 ATHI 210
            TH 
Sbjct: 183 TTHQ 186

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198

>gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 57.7 bits (140), Expect = 1e-09
 Identities = 72/263 (27%), Positives = 112/263 (42%), Gaps = 41/263 (15%)

Query: 33  YDFNLGISPGSRCLLVGANGSGKTTLLKIL-------AGKHMVGGRDVVQVLNRSSFHDT 85
           YD N+ I  GS   ++G  GSGK+TLL+ L       +G   +G R +            
Sbjct: 24  YDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNK----- 78

Query: 86  QLVCSGDLSYLGGSWSKTVGSAGEIP--------LQGDFSAEHMIFGVEGSDPVRRER-L 136
                  L  L     K VG   + P        ++ D     M FGV   D  ++ R +
Sbjct: 79  ------KLKPL----RKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREM 128

Query: 137 IELLDID---LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFF 193
           IEL+ +    L     ++S GQ RRV I   L    +VL+LDE T  LD   R ++++ F
Sbjct: 129 IELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMF 188

Query: 194 KDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRA----EKLAELDELRNSTNLLS 249
               +++G T V  TH  +    +A  +  +  G +       E  A+ DEL      L 
Sbjct: 189 YKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFADPDEL--EAIGLD 246

Query: 250 VVESWLRSETKLEKKRPVDPPKQ 272
           + E+ ++ +  LE+K  +  PK 
Sbjct: 247 LPET-VKFKRALEEKFGISFPKP 268

Length = 290

>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter

 Score = 56.1 bits (136), Expect = 2e-09
 Identities = 44/209 (21%), Positives = 88/209 (42%), Gaps = 31/209 (14%)

Query: 34  DFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL 93
           D +  +  G    L+G NG+GKTT ++++ G  ++     V    +      +      +
Sbjct: 18  DISFSVEKGEIFGLLGPNGAGKTTTIRMILGI-ILPDSGEVLFDGKPLDIAAR----NRI 72

Query: 94  SYLG---GSWSK-TVGSAGEIPLQGDFSAEHMIF-----GVEGSDPVRR-ERLIELLDID 143
            YL    G + K  V              + +++     G++  +  RR +  +E L++ 
Sbjct: 73  GYLPEERGLYPKMKV-------------IDQLVYLAQLKGLKKEEARRRIDEWLERLELS 119

Query: 144 LQW--RMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRG 201
                R+ ++S G +++VQ    ++H  ++L+LDE    LD V    L D    E  + G
Sbjct: 120 EYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVI-RELARAG 178

Query: 202 ATIVYATHIFDGLETWATHLAYIQDGELR 230
            T++ +TH  + +E     +  +  G   
Sbjct: 179 KTVILSTHQMELVEELCDRVLLLNKGRAV 207

This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210

>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein

 Score = 56.5 bits (137), Expect = 2e-09
 Identities = 60/247 (24%), Positives = 105/247 (42%), Gaps = 33/247 (13%)

Query: 14  IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLK-------ILAGKH 66
           ++V  +   Y  N K  L  + NL I+PG    ++G +G+GK+TLL+         +G  
Sbjct: 2   LEVENLSKVY-PNGKQAL-KNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSI 59

Query: 67  MVGGRDVVQV-------LNRSS---FHDTQLVCSGDLSYLGGSWSKTVGSAGEIP-LQGD 115
           ++ G D+ ++       L R     F    L+    L+ L       +G       L G 
Sbjct: 60  LLEGTDITKLRGKKLRKLRRRIGMIFQHYNLI--ERLTVLENVLHGRLGYKPTWRSLLGR 117

Query: 116 FSAEHMIFGVEGSDPVRRERLIELLDIDLQW--RMHKVSDGQRRRVQICMGLLHPFKVLL 173
           FS E         D  R    +E + +  +   R  ++S GQ++RV I   L     ++L
Sbjct: 118 FSEE---------DKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLIL 168

Query: 174 LDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAE 233
            DE    LD      ++D+ K   ++ G T++   H  D  + +A  +  ++ GE+    
Sbjct: 169 ADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDG 228

Query: 234 KLAELDE 240
             +ELD+
Sbjct: 229 APSELDD 235

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243

>gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters

 Score = 55.7 bits (135), Expect = 2e-09
 Identities = 42/173 (24%), Positives = 66/173 (38%), Gaps = 37/173 (21%)

Query: 17  CGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGR---DV 73
                + +G  K P+  DF+  + PG   L++G  GSG +TLLK LA +         D+
Sbjct: 8   NISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDI 67

Query: 74  VQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRR 133
               N   + +      G++ Y+                + D     +         VR 
Sbjct: 68  --HYNGIPYKEFAEKYPGEIIYVS---------------EEDVHFPTLT--------VR- 101

Query: 134 ERLIELLDIDLQWRMH----KVSDGQRRRVQICMGLLHPFKVLLLDEITVDLD 182
               E LD  L+ + +     +S G+R+RV I   L+    VL  D  T  LD
Sbjct: 102 ----ETLDFALRCKGNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLD 150

The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202

>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C

 Score = 56.1 bits (136), Expect = 2e-09
 Identities = 54/194 (27%), Positives = 78/194 (40%), Gaps = 53/194 (27%)

Query: 21  FSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKIL-------AGKHMVGGRDV 73
           F Y G D PP+  D +L I  G    LVG +GSGK+TL+ ++       +G+ ++ G DV
Sbjct: 8   FRYPG-DGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDV 66

Query: 74  VQV-LN--RSSF----HDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVE 126
               L   R        D  L            ++ TV             AE++ +G  
Sbjct: 67  RDYTLASLRRQIGLVSQDVFL------------FNDTV-------------AENIAYGRP 101

Query: 127 GSDP--VRR-----------ERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLL 173
           G+    V               L E  D  +  R  K+S GQR+R+ I   LL    +L+
Sbjct: 102 GATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILI 161

Query: 174 LDEITVDLDVVARM 187
           LDE T  LD  +  
Sbjct: 162 LDEATSALDTESER 175

MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234

>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

 Score = 56.9 bits (138), Expect = 3e-09
 Identities = 34/105 (32%), Positives = 57/105 (54%), Gaps = 8/105 (7%)

Query: 133 RERLIELLDI----DLQWRM----HKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVV 184
           R R +ELL++    + + R+    H++S GQR+RV I M L +   +L+ DE T  LDV 
Sbjct: 132 RARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVT 191

Query: 185 ARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL 229
            +  +LD  K+   + G  I++ TH    +  +A  +  +Q GE+
Sbjct: 192 VQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEI 236

Length = 534

>gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 56.3 bits (136), Expect = 3e-09
 Identities = 63/227 (27%), Positives = 95/227 (41%), Gaps = 36/227 (15%)

Query: 37  LGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYL 96
           L I  GS+  L+G NG+GK+TLL  L G ++   R  V+V+ R    + +          
Sbjct: 26  LSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ-RGRVKVMGREVNAENE---------- 74

Query: 97  GGSW-SKTVGSAGEIPLQGDFSA---EHMIFGVE----GSDPVRRERLIELLDIDLQWRM 148
              W    VG   + P    FS+   + + FG        D V R R+ E L     W  
Sbjct: 75  --KWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVER-RVEEALKAVRMWDF 131

Query: 149 -----HKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGAT 203
                + +S GQ++RV I   L     V++LDE    LD   +  L++   D    +G T
Sbjct: 132 RDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEIL-DRLHNQGKT 190

Query: 204 IVYATHIFDGLETWATHLAYIQDG--------ELRRAEKLAELDELR 242
           ++ ATH  D    WA  +  +++G         L   E + E   LR
Sbjct: 191 VIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLTDEDIVEQAGLR 237

Length = 274

>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 56.2 bits (136), Expect = 4e-09
 Identities = 66/219 (30%), Positives = 98/219 (44%), Gaps = 42/219 (19%)

Query: 14  IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKIL-------AGKH 66
           I+V  + F Y       L  D +  +  G    +VG NGSGK+TL K+L       AG  
Sbjct: 6   IRVEHISFRYPDAATYAL-KDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTI 64

Query: 67  MVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIP---LQGDFSAEHMIF 123
            VGG     VL+  +  D +               + VG   + P     G    + + F
Sbjct: 65  TVGGM----VLSEETVWDVR---------------RQVGMVFQNPDNQFVGATVQDDVAF 105

Query: 124 GVEGSDPVRRERLIELLDIDL-QWRM--------HKVSDGQRRRVQICMGL-LHPFKVLL 173
           G+E    V RE ++E +D  L Q  M        H++S GQ++RV I   L L P  +++
Sbjct: 106 GLENIG-VPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQP-DIII 163

Query: 174 LDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFD 212
           LDE T  LD   R ++L+  +   EQ+G T++  TH  D
Sbjct: 164 LDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLD 202

Length = 279

>gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter

 Score = 54.7 bits (132), Expect = 6e-09
 Identities = 54/221 (24%), Positives = 98/221 (44%), Gaps = 50/221 (22%)

Query: 34  DFNLGISPGSRCLLVGANGSGKTTLLKIL-------AGKHMVGGRDV-------VQVLNR 79
             N+ IS G    LVG +G+GK+TLLK++       +G   V G+DV       +  L R
Sbjct: 19  GINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR 78

Query: 80  S---SFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRE-- 134
                F D +L+             + V              E++ F +E +    RE  
Sbjct: 79  KIGVVFQDFRLL-----------PDRNV-------------YENVAFALEVTGVPPREIR 114

Query: 135 -RLIELLD-IDLQWRMH----KVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMD 188
            R+   L+ + L  +      ++S G+++RV I   +++   +L+ DE T +LD     +
Sbjct: 115 KRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWE 174

Query: 189 LLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL 229
           +++  K    + G T+V ATH  + ++T    +  ++ G+L
Sbjct: 175 IMNLLKK-INKAGTTVVVATHAKELVDTTRHRVIALERGKL 214

FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214

>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system

 Score = 54.6 bits (132), Expect = 6e-09
 Identities = 57/223 (25%), Positives = 95/223 (42%), Gaps = 39/223 (17%)

Query: 21  FSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRS 80
           FSY+   +  +  D +L +  G    L G NG+GKTTL KILAG            L + 
Sbjct: 7   FSYKKGTE--ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAG------------LIKE 52

Query: 81  SFHDTQLVCSGDLSYLGGSWSKT---VGSAGEIP------LQGDFSAEHMIFGVEGSD-- 129
                    SG +  L G   K      S G +       L  D   E ++ G++  D  
Sbjct: 53  --------SSGSIL-LNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAG 103

Query: 130 PVRRERLIELLDI-DLQ-WRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARM 187
             + E +++ LD+  L+      +S GQ++R+ I   LL    +L+ DE T  LD    M
Sbjct: 104 NEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLD-YKNM 162

Query: 188 DLL-DFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL 229
           + + +  ++   Q G  ++  TH ++ L      +  + +G +
Sbjct: 163 ERVGELIRELAAQ-GKAVIVITHDYEFLAKVCDRVLLLANGAI 204

Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205

>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 55.6 bits (134), Expect = 6e-09
 Identities = 55/226 (24%), Positives = 99/226 (43%), Gaps = 40/226 (17%)

Query: 43  SRCLLVGANGSGKTTL-------LKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSY 95
           SR  ++G NG+GK+TL       LK  +G  ++ G  +     + +  + +         
Sbjct: 31  SRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPI----TKENIREVR--------- 77

Query: 96  LGGSWSKTVGSAGEIPLQGDFSA---EHMIFGV------EGSDPVRRERLIELLDI-DLQ 145
                 K VG   + P    FS    + + FG       E +   R    + +L + +L+
Sbjct: 78  ------KFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELR 131

Query: 146 WRM-HKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATI 204
            R+ H +S G+++RV I   +    +VL+LDE T  LD     +L+DF  D  E  G T+
Sbjct: 132 DRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTV 191

Query: 205 VYATHIFDGLETWATHLAYIQDGELRRAEKLAEL---DELRNSTNL 247
           +++TH  D +   A ++  +  G +     + E+    +L    +L
Sbjct: 192 IFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQPDLLARVHL 237

Length = 277

>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 54.9 bits (132), Expect = 1e-08
 Identities = 56/194 (28%), Positives = 90/194 (46%), Gaps = 29/194 (14%)

Query: 34  DFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSS---FHDTQLVCS 90
             N+ I  G    ++G NG+GK+TL + L G           +L  SS     D + +  
Sbjct: 24  GININIKKGEVTAILGGNGAGKSTLFQNLNG-----------ILKPSSGRILFDGKPI-- 70

Query: 91  GDLSYLG-GSWSKTVGSAGEIPLQGDFSA---EHMIFGVEG----SDPVRR--ERLIELL 140
            D S  G     ++VG   + P    FSA   + + FG        D VR+  +  ++  
Sbjct: 71  -DYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRT 129

Query: 141 DID-LQWR-MHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECE 198
            I+ L+ +  H +S GQ++RV I   L+   KVL+LDE T  LD +   +++    +  +
Sbjct: 130 GIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQK 189

Query: 199 QRGATIVYATHIFD 212
           + G TI+ ATH  D
Sbjct: 190 ELGLTIIIATHDID 203

Length = 283

>gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 54.6 bits (132), Expect = 1e-08
 Identities = 56/215 (26%), Positives = 92/215 (42%), Gaps = 40/215 (18%)

Query: 14  IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDV 73
           IKV  + FSY  N +     + +  I+ G    ++G NGSGK+T+ KIL           
Sbjct: 8   IKVENVSFSY-PNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKIL----------- 55

Query: 74  VQVLNRSSFH---DTQLVCSGDLSYLGGSWSKTVGSAGEIPLQ---GDF---SAEHMI-F 123
             +L   S     D   +   +L  +     K +G    I  Q     F   + E  I F
Sbjct: 56  TGLLKPQSGEIKIDGITISKENLKEI----RKKIG----IIFQNPDNQFIGATVEDDIAF 107

Query: 124 GVEGS--DPVRRERLIELL----DID--LQWRMHKVSDGQRRRVQICMGL-LHPFKVLLL 174
           G+E     P + + +I+ L     ++  L      +S GQ++RV I   L L+P ++++ 
Sbjct: 108 GLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNP-EIIIF 166

Query: 175 DEITVDLDVVARMDLLDFFKDECEQRGATIVYATH 209
           DE T  LD   + ++     D  + R  T++  TH
Sbjct: 167 DESTSMLDPKGKREIKKIMVDLRKTRKKTLISITH 201

Length = 271

>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional

 Score = 54.7 bits (132), Expect = 1e-08
 Identities = 44/154 (28%), Positives = 69/154 (44%), Gaps = 20/154 (12%)

Query: 123 FGVEGSDPVRRER-LIELLDID---LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEIT 178
            GV   +  +R    IEL+ +D   LQ    ++S GQ+RRV +   L      L+ DE T
Sbjct: 134 MGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPT 193

Query: 179 VDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRA----EK 234
             LD     ++L+ F D   ++G TI+  TH  D +  W     + +DG++ +     + 
Sbjct: 194 AGLDPQGVKEILEIF-DNLNKQGKTIILVTHDLDNVLEWTKRTIFFKDGKIIKDGDTYDI 252

Query: 235 LAELDELRN----STNLLSVVESWLRSETKLEKK 264
           L++   L         LL+ V        KLEKK
Sbjct: 253 LSDNKFLIENNMEPPKLLNFVN-------KLEKK 279

Length = 305

>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein

 Score = 55.2 bits (133), Expect = 1e-08
 Identities = 57/223 (25%), Positives = 96/223 (43%), Gaps = 31/223 (13%)

Query: 36  NLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRD-----VVQVLNRSSFHDTQ---- 86
           +L + PG    L G NG+GK+TL+KIL+G +  G  D         L  S+  DT+    
Sbjct: 21  DLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGI 80

Query: 87  ------LVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELL 140
                 L    +LS       + +    EI L G   A + ++       +R + L+  L
Sbjct: 81  VIIHQELTLVPELSVA-----ENIFLGNEITLPGGRMAYNAMY-------LRAKNLLREL 128

Query: 141 DIDLQWRMHKVSD---GQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDEC 197
            +D       V D   GQ++ V+I   L    ++L+LDE +  L       LLD  +D  
Sbjct: 129 QLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRD-L 187

Query: 198 EQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDE 240
           +  G   VY +H  + ++     +  I+DG+    + ++ + E
Sbjct: 188 KAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTMSE 230

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500

>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 54.4 bits (131), Expect = 1e-08
 Identities = 57/204 (27%), Positives = 88/204 (43%), Gaps = 40/204 (19%)

Query: 22  SYEGNDKP-PLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRS 80
           SYEG  KP     D +L I+ G   +++G +G GKTTLL ++AG  +   R  +Q+  R 
Sbjct: 12  SYEG--KPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAG-FVTPSRGSIQLNGRR 68

Query: 81  S----------FHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDP 130
                      F +  L+           W   V       LQ        + G+E +  
Sbjct: 69  IEGPGAERGVVFQNEALL----------PW-LNVIDNVAFGLQ--------LRGIEKAQ- 108

Query: 131 VRRERLIELLD-IDLQWRMHK----VSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVA 185
            RRE   ++L  + L+   HK    +S G R+RV I   L    ++LLLDE    LD + 
Sbjct: 109 -RREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALT 167

Query: 186 RMDLLDFFKDECEQRGATIVYATH 209
           R  + +   D  ++ G  ++  TH
Sbjct: 168 REQMQELLLDLWQETGKQVLLITH 191

Length = 259

>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score = 54.3 bits (131), Expect = 2e-08
 Identities = 57/201 (28%), Positives = 88/201 (43%), Gaps = 49/201 (24%)

Query: 34  DFNLGISPGSRCLLVGANGSGKTTLLKILA-------GKHMVGGRDVVQVLNRSS----- 81
           D +L I  G    L+G +G+GK+TLL+I+A       G+  + GR +  V N +      
Sbjct: 20  DISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKV 79

Query: 82  ---FHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVE-----GSDPVRR 133
              F    L       ++      TV             A+++ FG++      S+   R
Sbjct: 80  GFVFQHYAL-----FPHM------TV-------------ADNIAFGLKVRKERPSEAEIR 115

Query: 134 ERLIELLDI----DLQWRM-HKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMD 188
            R+ ELL +     L  R   ++S GQR+RV +   L    KVLLLDE    LD   R +
Sbjct: 116 ARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKE 175

Query: 189 LLDFFKDECEQRGATIVYATH 209
           L  + +   ++ G T V+ TH
Sbjct: 176 LRRWLRKLHDRLGVTTVFVTH 196

Length = 345

>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit

 Score = 54.1 bits (130), Expect = 3e-08
 Identities = 58/264 (21%), Positives = 109/264 (41%), Gaps = 31/264 (11%)

Query: 34  DFNLGISPGSRCLLVGANGSGKTTLLKIL-------AGKHMVGGRDVVQVLNRSSFHDTQ 86
           D +L I+ G   +++G +GSGK+T +++L       AG+  + G ++++          +
Sbjct: 11  DADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQ------SPVE 64

Query: 87  L--VCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLD-ID 143
           L  V    +  +     +       + +  + S    + G    +  R+E+ +ELL  + 
Sbjct: 65  LREVRRKKIGMV----FQQFALFPHMTILQNTSLGPELLGWPEQE--RKEKALELLKLVG 118

Query: 144 LQWRMHK----VSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQ 199
           L+   H+    +S G ++RV +   L     +LL+DE    LD + R  + D  K     
Sbjct: 119 LEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQAT 178

Query: 200 RGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDELRNSTNLLSVVESWLRSET 259
              TIV+ TH  D        +  ++ GE+ +     E+  LRN  N    VE ++    
Sbjct: 179 LQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEI--LRNPAN--EYVEEFIGKV- 233

Query: 260 KLEKKRPVDPPKQVQKTSPFGSSP 283
            L +    +   Q   T P   + 
Sbjct: 234 DLSQVFDAERIAQRMNTGPITKTA 257

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363

>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system

 Score = 52.8 bits (128), Expect = 3e-08
 Identities = 48/193 (24%), Positives = 80/193 (41%), Gaps = 34/193 (17%)

Query: 34  DFNLGISPGSRCLLVGANGSGKTTLLKILAGKH-------MVGGRDV----VQVLNRS-- 80
           D +  + PG    L+G NG+GKTTL  +++G         +  G D+       + R   
Sbjct: 18  DVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI 77

Query: 81  --SFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIE 138
             +F   +L    +L+ L     + V  A +                   +   RER  E
Sbjct: 78  GRTFQIPRLF--PELTVL-----ENVMVAAQARTGSGLLL----ARARREEREARERAEE 126

Query: 139 LLD-IDLQWRMHKV----SDGQRRRVQICMGL-LHPFKVLLLDEITVDLDVVARMDLLDF 192
           LL+ + L     +     S GQ+RR++I   L   P K+LLLDE    L+     +L + 
Sbjct: 127 LLERVGLADLADRPAGELSYGQQRRLEIARALATDP-KLLLLDEPAAGLNPEETEELAEL 185

Query: 193 FKDECEQRGATIV 205
            ++   +RG T++
Sbjct: 186 IRE-LRERGITVL 197

The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236

>gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein

 Score = 54.2 bits (131), Expect = 3e-08
 Identities = 21/47 (44%), Positives = 31/47 (65%), Gaps = 1/47 (2%)

Query: 18  GMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAG 64
            + F Y   + PPL  +F+L + PG R  LVG +GSGK+T+ K++AG
Sbjct: 482 NITFGYSPLE-PPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAG 527

This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710

>gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 53.9 bits (130), Expect = 3e-08
 Identities = 49/219 (22%), Positives = 94/219 (42%), Gaps = 45/219 (20%)

Query: 40  SPGSR-CLLVGANGSGKTTLLKILAG-KHMVGGRDVV--QVLNRSS-------------- 81
            P      L G +GSGKT+L+ ++AG      GR  +  +VL  +               
Sbjct: 21  LPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGY 80

Query: 82  -FHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELL 140
            F D +L       +       TV               ++ +G+  S   + ++L+ LL
Sbjct: 81  VFQDARL-----FPHY------TV-------------RGNLRYGMWKSMRAQFDQLVALL 116

Query: 141 DID--LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECE 198
            I+  L      +S G+++RV I   LL   ++LL+DE    LD+  + ++L + +   +
Sbjct: 117 GIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRD 176

Query: 199 QRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAE 237
           +    I+Y +H  D +   A  +  +++G+++ +  L E
Sbjct: 177 EINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEE 215

Length = 352

>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional

 Score = 52.6 bits (126), Expect = 4e-08
 Identities = 57/197 (28%), Positives = 87/197 (44%), Gaps = 44/197 (22%)

Query: 34  DFNLGISPGSRCLLVGANGSGKTTLLKIL-------AGKHMVGGRDVVQVLNRSS----- 81
            F++   PG    L G +G+GK+TLLK++       AGK    G D+ ++ NR       
Sbjct: 22  TFHM--RPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR 79

Query: 82  -----FHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERL 136
                F D  L+             +TV     IPL        +I G  G D  RR   
Sbjct: 80  QIGMIFQDHHLLM-----------DRTVYDNVAIPL--------IIAGASGDDIRRRVSA 120

Query: 137 ----IELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDF 192
               + LLD    + + ++S G+++RV I   +++   VLL DE T +LD      +L  
Sbjct: 121 ALDKVGLLDKAKNFPI-QLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRL 179

Query: 193 FKDECEQRGATIVYATH 209
           F +E  + G T++ ATH
Sbjct: 180 F-EEFNRVGVTVLMATH 195

Length = 222

>gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

 Score = 53.9 bits (130), Expect = 4e-08
 Identities = 49/191 (25%), Positives = 74/191 (38%), Gaps = 36/191 (18%)

Query: 30  PLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVC 89
            L  + N  + PG R L+ G +G+GKT+LL+ LAG    G                    
Sbjct: 407 TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWG-------------------- 446

Query: 90  SGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDI----DLQ 145
           SG +S    S    +     +P QG    E + +    +       L+ +L      DL 
Sbjct: 447 SGRISMPADSALLFLPQRPYLP-QGTL-REALCYP-NAAPDFSDAELVAVLHKVGLGDLA 503

Query: 146 WRMHKV-------SDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECE 198
            R+ +        S G+++R+     LLH  K + LDE T  LD      L    K+E  
Sbjct: 504 ERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELP 563

Query: 199 QRGATIVYATH 209
              AT++   H
Sbjct: 564 --DATVISVGH 572

Length = 604

>gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system

 Score = 52.5 bits (127), Expect = 4e-08
 Identities = 44/216 (20%), Positives = 82/216 (37%), Gaps = 53/216 (24%)

Query: 34  DFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL 93
           D +  +  G R  L+G NG+GK+TLL++LAG                         SG +
Sbjct: 40  DVSFEVPRGERIGLIGRNGAGKSTLLRLLAG--------------------IYPPDSGTV 79

Query: 94  SYLGG-SWSKTVGSAGEIPLQGDFSAE------HMIFGVEGSDPVRRERLI----ELLD- 141
           +  G  S    +G         + +          + G+   +   +   I    EL D 
Sbjct: 80  TVRGRVSSLLGLGGG----FNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDF 135

Query: 142 IDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQR- 200
           IDL  + +  S G + R+   +       +LL+DE+    D          F+++C++R 
Sbjct: 136 IDLPVKTY--SSGMKARLAFAIATALEPDILLIDEVLAVGDA--------AFQEKCQRRL 185

Query: 201 ------GATIVYATHIFDGLETWATHLAYIQDGELR 230
                 G T++  +H    ++        ++ G++R
Sbjct: 186 RELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIR 221

The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224

>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter

 Score = 54.0 bits (130), Expect = 4e-08
 Identities = 53/226 (23%), Positives = 90/226 (39%), Gaps = 43/226 (19%)

Query: 5   MNENEKLN-SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKIL- 62
             E   LN  I +  + +SY       +  D +L I   S+  +VG +GSGK+TL K+L 
Sbjct: 464 RTELNNLNGDIVINDVSYSYGYGS--NILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLV 521

Query: 63  ------AGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDF 116
                 +G+ ++ G  +             L     ++YL        GS  E  L G  
Sbjct: 522 GFFQARSGEILLNGFSL------KDIDRHTL--RQFINYLPQEPYIFSGSILENLLLG-- 571

Query: 117 SAEHMIFGVEGSDPVRRERLIEL----------LDIDLQWRMHKVSDGQRRRVQICMGLL 166
           + E     V   +      + E+             +L      +S GQ++R+ +   LL
Sbjct: 572 AKE----NVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALL 627

Query: 167 HPFKVLLLDEITVDLDVVARMDLLD---FFKDECEQRGATIVYATH 209
              KVL+LDE T +LD +    +++     +D+      TI++  H
Sbjct: 628 TDSKVLILDESTSNLDTITEKKIVNNLLNLQDK------TIIFVAH 667

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708

>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 52.7 bits (127), Expect = 4e-08
 Identities = 49/209 (23%), Positives = 82/209 (39%), Gaps = 50/209 (23%)

Query: 30  PLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAG-------KHMVGGRDVVQVLNRSSF 82
                 +L I+ G    ++G+NG+GK+TLL  +AG       + ++ G DV     + S 
Sbjct: 20  RALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDV----TKKSV 75

Query: 83  HDTQLVCSGDLSYLGGSWSKTV------GSAGEIPLQGDFSAEHMIF-----GVEGSDPV 131
                + +             V      G+A E+ +      E++          G    
Sbjct: 76  AKRANLLA------------RVFQDPLAGTAPELTI-----EENLALAESRGKKRGLSSA 118

Query: 132 RRERL-------IELLDIDLQWRMH----KVSDGQRRRVQICMGLLHPFKVLLLDEITVD 180
             ER        +  L + L+ R+      +S GQR+ + + M  LHP K+LLLDE T  
Sbjct: 119 LNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAA 178

Query: 181 LDVVARMDLLDFFKDECEQRGATIVYATH 209
           LD      +++      E+   T +  TH
Sbjct: 179 LDPKTAEFVMELTAKIVEEHKLTTLMVTH 207

Length = 263

>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA

 Score = 52.9 bits (127), Expect = 4e-08
 Identities = 62/220 (28%), Positives = 97/220 (44%), Gaps = 45/220 (20%)

Query: 39  ISPGSRCLLVGANGSGKTTLLKIL-------AGKHMVGGRDVVQVLNRSSFHDTQLVCSG 91
              G     +G NG+GK+T +KI+       +G   V G DV+Q                
Sbjct: 25  AQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ---------NPKEVQR 75

Query: 92  DLSYLGGSWSKTVGSAGEIPLQGD--------FSAEHMIFGVEGSDPVRR-ERLIELLDI 142
           ++ YL              PL  D        F A   I+G++G    +R E +IEL  +
Sbjct: 76  NIGYL----------PEHNPLYLDMYVREYLQFIAG--IYGMKGQLLKQRVEEMIEL--V 121

Query: 143 DLQWRMHK----VSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECE 198
            L+   HK    +S G R+RV +   L+H  KVL+LDE T  LD    +++ +  K+  +
Sbjct: 122 GLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK 181

Query: 199 QRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL 238
            +  TI+ +THI   +E     +  I  G++   +KL EL
Sbjct: 182 DK--TIILSTHIMQEVEAICDRVIIINKGKIVADKKLDEL 219

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301

>gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

 Score = 53.7 bits (129), Expect = 5e-08
 Identities = 46/191 (24%), Positives = 74/191 (38%), Gaps = 32/191 (16%)

Query: 30  PLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQ----VLNRSSFHDT 85
            +  + NL I PG    +VG +G+GKTTLL+++ G     G +  +     +       +
Sbjct: 397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVS 456

Query: 86  QLVCSGDLSYLGGS------WSKTVGSAGEIPLQGDFSAEHMIFGVEG-SDPVRRERLIE 138
            L+        G         SKT          GD +A   I    G SD V   R   
Sbjct: 457 ALIPGEYEPEFGEVTILEHLRSKT----------GDLNAAVEILNRAGLSDAVLYRR--- 503

Query: 139 LLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECE 198
                   +  ++S GQ+ R ++   L     VLL+DE    LD +  + +     +   
Sbjct: 504 --------KFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAR 555

Query: 199 QRGATIVYATH 209
           + G T++  TH
Sbjct: 556 EAGITLIVVTH 566

Length = 593

>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE

 Score = 52.1 bits (125), Expect = 8e-08
 Identities = 61/241 (25%), Positives = 107/241 (44%), Gaps = 31/241 (12%)

Query: 30  PLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAG--KHMVG-----GRDVVQVLNRSSF 82
           P+  + +L I  G    L+G +G GK+TL ++L G  K   G     G+D+ Q L+R   
Sbjct: 25  PVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQ-LDRKQR 83

Query: 83  ----HDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIE 138
                D QLV     S    +   TV      PL       H+       +  ++ R+ E
Sbjct: 84  RAFRRDVQLVFQD--SPSAVNPRMTVRQIIGEPL------RHL---TSLDESEQKARIAE 132

Query: 139 LLDI------DLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDF 192
           LLD+      D      ++S GQ +R+ I   L    K+++LDE   +LD+V +  +L+ 
Sbjct: 133 LLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILEL 192

Query: 193 FKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDELRN--STNLLSV 250
            +   +  G   ++ TH    ++++   +A +  G++     +A+L   ++    NL S 
Sbjct: 193 LRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQLLSFKHPAGRNLQSA 252

Query: 251 V 251
           V
Sbjct: 253 V 253

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265

>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C

 Score = 50.7 bits (122), Expect = 9e-08
 Identities = 53/223 (23%), Positives = 87/223 (39%), Gaps = 57/223 (25%)

Query: 14  IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHM------ 67
           ++V  + F Y G  +PP+  + +  I PG    ++G +GSGK+TL +++ G         
Sbjct: 1   LEVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRV 59

Query: 68  -VGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVE 126
            + G D+ Q                D + LG      VG       Q D      +F   
Sbjct: 60  RLDGADISQW---------------DPNELG----DHVGYL----PQDD-----ELF--S 89

Query: 127 GSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVAR 186
           GS          + +  L       S GQR+R+ +   L    ++L+LDE    LDV   
Sbjct: 90  GS----------IAENIL-------SGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGE 132

Query: 187 MDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL 229
             L        +  GAT +   H  + L + A  +  ++DG +
Sbjct: 133 RALNQAIAA-LKAAGATRIVIAHRPETLAS-ADRILVLEDGRV 173

This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173

>gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 51.4 bits (123), Expect = 1e-07
 Identities = 55/245 (22%), Positives = 100/245 (40%), Gaps = 55/245 (22%)

Query: 13  SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRD 72
           SI++ G+   Y  +      +D  L    G   +L+G +G+GK++LL++L         +
Sbjct: 2   SIQLNGINCFYGAHQ---ALFDITLDCPEGETLVLLGPSGAGKSSLLRVL---------N 49

Query: 73  VVQVLNRSSFHDTQLVCSGDLSYLGGSW--SKTVGSAGEIPLQGD----FSAEHM----- 121
           ++++             SG L+  G  +  SKT        L+ +    F   ++     
Sbjct: 50  LLEMPR-----------SGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLT 98

Query: 122 -----------IFGVEGSDPVRRERLIELL------DIDLQWRMHKVSDGQRRRVQICMG 164
                      + G+  S      R  +LL          ++ +H +S GQ++RV I   
Sbjct: 99  VQENLIEAPCRVLGL--SKDQALARAEKLLKRLRLKPYADRYPLH-LSGGQQQRVAIARA 155

Query: 165 LLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYI 224
           L+   +VLL DE T  LD      ++   K E  + G T V  TH  +     A+ + Y+
Sbjct: 156 LMMEPQVLLFDEPTAALDPEITAQIVSIIK-ELAETGITQVIVTHEVEVARKTASRVVYM 214

Query: 225 QDGEL 229
           ++G +
Sbjct: 215 ENGHI 219

Length = 242

>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C

 Score = 51.3 bits (123), Expect = 1e-07
 Identities = 51/209 (24%), Positives = 83/209 (39%), Gaps = 41/209 (19%)

Query: 18  GMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILA-------GKHMVGG 70
            ++F Y+  D P +  + +L I PG    +VG +GSGK+TL K++        G+ +V G
Sbjct: 5   HVRFRYKP-DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDG 63

Query: 71  RDVVQVLNRSSFHDTQL-VCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGV---- 125
            D+       ++   Q+ V   +      S    +  A         S E +I       
Sbjct: 64  HDLALA--DPAWLRRQVGVVLQENVLFNRSIRDNIALADPGM-----SMERVIEAAKLAG 116

Query: 126 ---------EGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDE 176
                    EG D +  E+   L            S GQR+R+ I   L+H  ++L+ DE
Sbjct: 117 AHDFISELPEGYDTIVGEQGAGL------------SGGQRQRIAIARALIHNPRILIFDE 164

Query: 177 ITVDLDVVARMDLLDFFKDECEQRGATIV 205
            T  LD  +   ++    D C  R   I+
Sbjct: 165 ATSALDYESEHAIMRNMHDICAGRTVIII 193

The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237

>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD

 Score = 51.2 bits (123), Expect = 1e-07
 Identities = 53/216 (24%), Positives = 89/216 (41%), Gaps = 29/216 (13%)

Query: 31  LFYDFNLGISPGSRCLLVGANGSGKTT----LLKILA-------GKHMVGGRDVVQVLNR 79
           L  D NL +  G    LVG +GSGK+     +L +L        G+ ++ GR ++ +  R
Sbjct: 1   LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIR 60

Query: 80  SSFHDTQLV------CSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRR 133
                   +          L  +G    +T+ S G++  Q        +  V   DP   
Sbjct: 61  G--RHIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDP--- 115

Query: 134 ERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFF 193
           E +++           ++S G  +RV I + LL     L+ DE T DLDVV +  +L   
Sbjct: 116 EEVLKKYP-------FQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLL 168

Query: 194 KDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL 229
           ++  +  G  I+  TH    +   A  +A + DG +
Sbjct: 169 RELRQLFGTGILLITHDLGVVARIADEVAVMDDGRI 204

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230

>gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 51.0 bits (122), Expect = 1e-07
 Identities = 47/195 (24%), Positives = 80/195 (41%), Gaps = 34/195 (17%)

Query: 30  PLFYDFNLGISPGSRCLLVGANGSGKTTLLKILA-------GKHMVGGRDVVQVLNRSSF 82
            +  + +L +  G    + G +G GK+TLLKI+A       G  +  G DV      S+ 
Sbjct: 17  KILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDV------STL 70

Query: 83  HDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFG----VEGSDPVRRERLIE 138
                     +SY           A    L GD   +++IF         D      L+ 
Sbjct: 71  KPEAYRQ--QVSYC----------AQTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLA 118

Query: 139 LLDID---LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLD-FFK 194
              +    L   + ++S G+++R+ +   L    K+LLLDEIT  LD   + ++ +   +
Sbjct: 119 RFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHR 178

Query: 195 DECEQRGATIVYATH 209
              EQ  A +++ TH
Sbjct: 179 YVREQNVA-VLWITH 192

Length = 223

>gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein

 Score = 50.6 bits (121), Expect = 1e-07
 Identities = 56/181 (30%), Positives = 79/181 (43%), Gaps = 12/181 (6%)

Query: 31  LFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS 90
           LF   +  ++ G    + G NGSGKTTLL+ILAG        V+  LN       +   +
Sbjct: 15  LFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVL--LNGGPLDFQRDSIA 72

Query: 91  GDLSYLGGSWS-KTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMH 149
             L YLG +   KT  S  E  L+  + A+H    VE  + + R  L    D  +     
Sbjct: 73  RGLLYLGHAPGIKTTLSVLE-NLRF-WHADHSDEQVE--EALARVGLNGFEDRPV----A 124

Query: 150 KVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATH 209
           ++S GQ+RRV +   LL    + +LDE T  LD        +     C  RG  +V  TH
Sbjct: 125 QLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHC-ARGGMVVLTTH 183

Query: 210 I 210
            
Sbjct: 184 Q 184

CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201

>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family

 Score = 51.8 bits (125), Expect = 2e-07
 Identities = 47/184 (25%), Positives = 78/184 (42%), Gaps = 44/184 (23%)

Query: 14  IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHM------ 67
           I+   +   +   DK  L  D +  + PG    ++G NG+GK+TL +++ G+        
Sbjct: 323 IEAENLSKGF--GDKL-LIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTI 379

Query: 68  -VGGRDVVQVL----NRSSFHDTQLV---CSGDLSYLGGSWSKTVGSAGEIPLQGDFSAE 119
            +G  + V++     +R +    + V    SG L  +       +G   E+P +      
Sbjct: 380 KIG--ETVKLAYVDQSRDALDPNKTVWEEISGGLDII------QLGKR-EVPSRAYVGR- 429

Query: 120 HMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITV 179
              F  +GSD               Q ++ ++S G+R RV +   L     VLLLDE T 
Sbjct: 430 ---FNFKGSDQ--------------QKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTN 472

Query: 180 DLDV 183
           DLDV
Sbjct: 473 DLDV 476

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552

>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

 Score = 51.7 bits (125), Expect = 2e-07
 Identities = 59/208 (28%), Positives = 87/208 (41%), Gaps = 56/208 (26%)

Query: 34  DFNLGISPGSRCLLVGANGSGKTTLLKILAGKH-------MVGGRDVVQVLNRSSFHDTQ 86
             +L + PG    L+G NG+GK+TL+KIL+G +       ++ G+ V      SS  D  
Sbjct: 26  GVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPV----AFSSPRDAL 81

Query: 87  LVCSGDLSYLGGSWSKTVGSAG------EIPLQGDFS-AEHMIFGVEGSDPVR------- 132
                              +AG      E+ L  + S AE++  G E +           
Sbjct: 82  -------------------AAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAM 122

Query: 133 RERLIELLD-----IDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDV--VA 185
           R R  ELL      ID    +  +S  QR+ V+I   L    +VL+LDE T  L V    
Sbjct: 123 RRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETE 182

Query: 186 RM-DLLDFFKDECEQRGATIVYATHIFD 212
           R+ DL+   K     +G  I+Y +H  D
Sbjct: 183 RLFDLIRRLKA----QGVAIIYISHRLD 206

Length = 500

>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C

 Score = 50.3 bits (121), Expect = 2e-07
 Identities = 53/209 (25%), Positives = 90/209 (43%), Gaps = 42/209 (20%)

Query: 21  FSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKIL-------AGKHMVGGRDV 73
           F+Y  +   P+  D +  I  G +  +VG +GSGK+T+L++L       +G  ++ G+D+
Sbjct: 8   FAY--DPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDI 65

Query: 74  VQV-LN--RSS----------FHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEH 120
            +V L+  R +          F+DT      ++ Y  G    T     E         + 
Sbjct: 66  REVTLDSLRRAIGVVPQDTVLFNDTIGY---NIRY--GRPDATDEEVIEAAKAAQIHDKI 120

Query: 121 MIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVD 180
           M F  +G D +  ER ++L            S G+++RV I   +L    +LLLDE T  
Sbjct: 121 MRFP-DGYDTIVGERGLKL------------SGGEKQRVAIARAILKNPPILLLDEATSA 167

Query: 181 LDVVARMDLLDFFKDECEQRGATIVYATH 209
           LD     ++    +D  + R  T +   H
Sbjct: 168 LDTHTEREIQAALRDVSKGR--TTIVIAH 194

ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236

>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional

 Score = 51.4 bits (124), Expect = 2e-07
 Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 5/61 (8%)

Query: 6   NENEKL--NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILA 63
            +++KL  N+++V  +   ++     PLF + NL +  G R  ++G NG GKTTLL+ L 
Sbjct: 310 EQDKKLHRNALEVENLTKGFDNG---PLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLV 366

Query: 64  G 64
           G
Sbjct: 367 G 367

Length = 530

>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional

 Score = 51.2 bits (123), Expect = 2e-07
 Identities = 63/214 (29%), Positives = 93/214 (43%), Gaps = 23/214 (10%)

Query: 36  NLGISPGSRCLLVGANGSGKTTLLKILAGK--HMVGGRDV-VQVLNRSSFHDTQLVCSGD 92
           +L ++ G     VGANGSGK+ L + LAG+   + G R      + R SF   Q + S +
Sbjct: 23  SLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDE 82

Query: 93  LSYLGGSWSKT---VGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDID--LQWR 147
                  W +    + S GE    G  +AE  I   E  DP R E+L +   I   L  R
Sbjct: 83  -------WQRNNTDMLSPGEDDT-GRTTAE--IIQDEVKDPARCEQLAQQFGITALLDRR 132

Query: 148 MHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYA 207
              +S G+ R+  +C  L+    +L+LDE    LDV +R  L +       Q G T+V  
Sbjct: 133 FKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLAS-LHQSGITLVLV 191

Query: 208 THIFDGLETWATHLAYIQDGEL----RRAEKLAE 237
            + FD +  +      + D  L     R E L +
Sbjct: 192 LNRFDEIPDFVQFAGVLADCTLAETGEREEILQQ 225

Length = 490

>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily

 Score = 49.5 bits (119), Expect = 3e-07
 Identities = 43/182 (23%), Positives = 73/182 (40%), Gaps = 45/182 (24%)

Query: 34  DFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL 93
           + +    PG    ++G +G+GK+TLL  LAG+    G                   SG++
Sbjct: 27  NVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGV------------------SGEV 68

Query: 94  SYLGG------SWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWR 147
             + G      S+ K +G          +  +  I     +  VR     E L    + R
Sbjct: 69  -LINGRPLDKRSFRKIIG----------YVPQDDIL--HPTLTVR-----ETLMFAAKLR 110

Query: 148 MHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYA 207
              +S G+R+RV I + L+    +L LDE T  LD  + + ++   +      G TI+ +
Sbjct: 111 --GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLA-DTGRTIICS 167

Query: 208 TH 209
            H
Sbjct: 168 IH 169

ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194

>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

 Score = 50.0 bits (120), Expect = 3e-07
 Identities = 25/87 (28%), Positives = 41/87 (47%)

Query: 152 SDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIF 211
           S GQR+RV +   L+    +LLLDE    LD   R ++L      C++R  T++  TH  
Sbjct: 131 SGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHP 190

Query: 212 DGLETWATHLAYIQDGELRRAEKLAEL 238
           +     A  + ++ +G +       EL
Sbjct: 191 EDAARIADRVVFLDNGRIAAQGSTQEL 217

Length = 231

>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F

 Score = 48.2 bits (116), Expect = 4e-07
 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 4/77 (5%)

Query: 152 SDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIF 211
           S G++ R+ +   LL    +LLLDE T  LD+ +   L +  K   E  G T++  +H  
Sbjct: 72  SGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALK---EYPG-TVILVSHDR 127

Query: 212 DGLETWATHLAYIQDGE 228
             L+  AT +  ++DG+
Sbjct: 128 YFLDQVATKIIELEDGK 144

Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144

>gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed

 Score = 50.6 bits (121), Expect = 4e-07
 Identities = 60/210 (28%), Positives = 88/210 (41%), Gaps = 21/210 (10%)

Query: 34  DFNLGISPGSRCLLVGANGSGKTTLLKIL-------AGKHMVGGRDVVQVLNRSSFHDTQ 86
             +L +  GS   LVG NG+GKTTLL+ +       AG  +V G DV      S+   ++
Sbjct: 21  GVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVE---ALSARAASR 77

Query: 87  LVCS--GDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDID- 143
            V S   D S       + V   G  P +  F           +D    ER +E   +  
Sbjct: 78  RVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFD------TWTETDRAAVERAMERTGVAQ 131

Query: 144 -LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGA 202
                +  +S G+R+RV +   L     VLLLDE T  LD+  ++  L+  +   +  G 
Sbjct: 132 FADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDD-GK 190

Query: 203 TIVYATHIFDGLETWATHLAYIQDGELRRA 232
           T V A H  D    +   L  + DG +R A
Sbjct: 191 TAVAAIHDLDLAARYCDELVLLADGRVRAA 220

Length = 402

>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 50.0 bits (119), Expect = 4e-07
 Identities = 62/212 (29%), Positives = 92/212 (43%), Gaps = 37/212 (17%)

Query: 22  SYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTT-------LLKILAGKHMVGGRDVV 74
           SY   D  P   + NL I  G    ++G NGSGK+T       LL+   GK +V G D  
Sbjct: 8   SYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGID-- 65

Query: 75  QVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIP---LQGDFSAEHMIFGVEG--SD 129
                          +GD S L G   K VG   + P     G    E + FG E     
Sbjct: 66  ---------------TGDFSKLQGI-RKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLP 109

Query: 130 PVRRERLIE--LLDIDLQWRMHK----VSDGQRRRVQICMGLLHPFKVLLLDEITVDLDV 183
           P+   + ++  L +I L+   H+    +S GQ + V +   L    + L+ DE+T  LD 
Sbjct: 110 PIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDP 169

Query: 184 VARMDLLDFFKDECEQRGATIVYATHIFDGLE 215
            + + +L+  K +  ++G TIVY TH  + L 
Sbjct: 170 DSGIAVLERIK-KLHEKGKTIVYITHNLEELH 200

Length = 274

>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein

 Score = 49.8 bits (119), Expect = 4e-07
 Identities = 52/185 (28%), Positives = 81/185 (43%), Gaps = 31/185 (16%)

Query: 41  PGSRCLLVGANGSGKTTLLKILAG-------KHMVGGRDVVQVLNRSSFHDTQLVCSGDL 93
           PGS   L+G NGSGK+TLL++LAG          + G D+  +  R+      LV     
Sbjct: 26  PGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSD 85

Query: 94  SYLGGSWSKTVGSAGEIPLQGDFSAE---------HMIFGVEGSDPVRRERLIELLDIDL 144
           + +  +    V + G IP +  ++ +           +   E S    R+          
Sbjct: 86  TAVPLTVRDVV-ALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRD---------- 134

Query: 145 QWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATI 204
              M  +S G+R+RV +   L    K+LLLDE T  LDV A+++ L   ++     G T+
Sbjct: 135 ---MSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAAT-GVTV 190

Query: 205 VYATH 209
           V A H
Sbjct: 191 VAALH 195

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256

>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

 Score = 49.6 bits (119), Expect = 5e-07
 Identities = 34/119 (28%), Positives = 58/119 (48%), Gaps = 6/119 (5%)

Query: 132 RRERLIELLDIDLQWRMHK----VSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARM 187
           R + L++L+ +D      +    +S GQ++RV +   L     +LL+DE    LD + R 
Sbjct: 113 RADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRK 172

Query: 188 DLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDELRNSTN 246
            L +  K+  ++ G TIV+ TH  D     A  +A +  GE+ + +   E+  L N  N
Sbjct: 173 QLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEI--LANPAN 229

Length = 309

>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C

 Score = 48.7 bits (117), Expect = 6e-07
 Identities = 54/212 (25%), Positives = 91/212 (42%), Gaps = 47/212 (22%)

Query: 21  FSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILA-------GKHMVGGRDV 73
           FSY   + P L  + +L I  G +  ++G  GSGK+TLLK+LA       G  ++ G D+
Sbjct: 10  FSYPNQEIPAL-DNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDI 68

Query: 74  VQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSA---EHMIFGVEGSDP 130
            Q L+ +           ++ Y+            ++ L   F     +++  G   +D 
Sbjct: 69  RQ-LDPA-------DLRRNIGYVPQ----------DVTL---FYGTLRDNITLGAPLADD 107

Query: 131 VRRERLIEL-------------LDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEI 177
            R  R  EL             LD+ +  R   +S GQR+ V +   LL+   +LLLDE 
Sbjct: 108 ERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEP 167

Query: 178 TVDLDVVARMDLLDFFKDECEQRGATIVYATH 209
           T  +D+ +   L +  +     +  T++  TH
Sbjct: 168 TSAMDMNSEERLKERLRQLLGDK--TLIIITH 197

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220

>gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional

 Score = 48.9 bits (117), Expect = 8e-07
 Identities = 51/190 (26%), Positives = 88/190 (46%), Gaps = 23/190 (12%)

Query: 34  DFNLGISPGSRCLLVGANGSGKTTLLKILAG--KHMVG-----GRDVVQVLNRS---SFH 83
           + +L +  G    L+G +G GK+TL ++L G      G     G  + + LNR+   +F 
Sbjct: 30  NVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAK-LNRAQRKAFR 88

Query: 84  -DTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDI 142
            D Q+V    +S +     KTV      PL+      H++   +     R   ++  +D+
Sbjct: 89  RDIQMVFQDSISAVNPR--KTVREIIREPLR------HLLSLDKAERLARASEMLRAVDL 140

Query: 143 D---LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQ 199
           D   L  R  ++S GQ +RV +   L    K+L+LDE   +LD+V +  ++   K   +Q
Sbjct: 141 DDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQ 200

Query: 200 RGATIVYATH 209
            G   ++ TH
Sbjct: 201 FGTACLFITH 210

Length = 268

>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein

 Score = 48.7 bits (116), Expect = 8e-07
 Identities = 26/85 (30%), Positives = 44/85 (51%)

Query: 150 KVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATH 209
           ++S GQR+RV +   L+ P  +LLLDE    LD + R ++L   K  C +R  T++  TH
Sbjct: 128 QLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTH 187

Query: 210 IFDGLETWATHLAYIQDGELRRAEK 234
                   A+ +A +  G+++    
Sbjct: 188 HLSDARAIASQIAVVSQGKIKVVSD 212

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213

>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA

 Score = 49.7 bits (119), Expect = 8e-07
 Identities = 48/178 (26%), Positives = 77/178 (43%), Gaps = 16/178 (8%)

Query: 14  IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKIL-------AGKH 66
           ++   + F Y G D+P L    +L I PG    LVG +GSGK+TL+ ++       +G+ 
Sbjct: 331 VEFRNVTFRYPGRDRPAL-DSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQI 389

Query: 67  MVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTV--GSAGEIPLQGDFSAEHMIFG 124
           ++ G D+      S      LV S D+     + +  +  G   +        A    + 
Sbjct: 390 LLDGHDLADYTLASLRRQVALV-SQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYA 448

Query: 125 VEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLD 182
            +  D     +L   LD  +      +S GQR+R+ I   LL    +L+LDE T  LD
Sbjct: 449 QDFVD-----KLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALD 501

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571

>gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter

 Score = 48.9 bits (117), Expect = 8e-07
 Identities = 56/201 (27%), Positives = 79/201 (39%), Gaps = 50/201 (24%)

Query: 34  DFNLGISPGSRCLLVGANGSGKTTLLKILA-------GKHMVGGRDVVQVLNRSSFHDTQ 86
           D +L I  G    L+G +GSGKTTLL+++A       G  + GG D   V  +       
Sbjct: 20  DVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQ------- 72

Query: 87  LVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMI------FGVEGSDPVRR------- 133
                          + VG       Q      HM       FG+       R       
Sbjct: 73  --------------ERNVG----FVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIR 114

Query: 134 ERLIELLD-IDLQW---RM-HKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMD 188
            ++ ELL  + L W   R   ++S GQR+RV +   L    KVLLLDE    LD   R +
Sbjct: 115 AKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKE 174

Query: 189 LLDFFKDECEQRGATIVYATH 209
           L  + +   ++   T V+ TH
Sbjct: 175 LRRWLRRLHDELHVTTVFVTH 195

Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239

>gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 53/219 (24%), Positives = 96/219 (43%), Gaps = 42/219 (19%)

Query: 33  YDFNLGISPGSRCLLVGANGSGKTTLLKIL-------AGKHMVGGRDVVQVLNRSSF--- 82
            D +L +  G   +++G +GSGK+TL+++L        G+ +V G+D+ + L+ +     
Sbjct: 45  NDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAK-LSAAELREL 103

Query: 83  --HDTQLVCS--GDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVE--GSDPV-RRER 135
                 +V      L +      +TV              E++ FG+E  G     R ER
Sbjct: 104 RRKKISMVFQSFALLPH------RTV-------------LENVAFGLEVQGVPKAEREER 144

Query: 136 LIELLDID--LQWRMHKV---SDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLL 190
            +E L++     +        S G ++RV +   L +   +LL+DE    LD + R ++ 
Sbjct: 145 ALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQ 204

Query: 191 DFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL 229
           D   +   +   TIV+ TH  D        +A ++DGE+
Sbjct: 205 DELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEI 243

Length = 386

>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional

 Score = 48.2 bits (115), Expect = 1e-06
 Identities = 54/249 (21%), Positives = 95/249 (38%), Gaps = 45/249 (18%)

Query: 5   MNENEKLNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILA- 63
           M EN  L  ++       Y   D   L  + +  +  G   L+ G +G GK+TLLKI+A 
Sbjct: 1   MQENSPLLQLQ----NVGYLAGDAKIL-NNISFSLRAGEFKLITGPSGCGKSTLLKIVAS 55

Query: 64  ------GKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIP-LQGDF 116
                 G  +  G D+                    +     + + V    + P L GD 
Sbjct: 56  LISPTSGTLLFEGEDI-------------------STLKPEIYRQQVSYCAQTPTLFGDT 96

Query: 117 SAEHMIFGVE-GSDPVRRERLI------ELLDIDLQWRMHKVSDGQRRRVQICMGLLHPF 169
             +++IF  +  +        +       L D  L   + ++S G+++R+ +   L    
Sbjct: 97  VYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMP 156

Query: 170 KVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLE------TWATHLAY 223
           KVLLLDEIT  LD   + ++ +       ++   +++ TH  D +       T   H   
Sbjct: 157 KVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGE 216

Query: 224 IQDGELRRA 232
           +Q+     A
Sbjct: 217 MQEARYELA 225

Length = 225

>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 48.6 bits (116), Expect = 1e-06
 Identities = 58/232 (25%), Positives = 100/232 (43%), Gaps = 28/232 (12%)

Query: 12  NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGR 71
           N ++   + F+Y  + KP L  D +  I  GS   L+G NGSGK+T+ K++ G       
Sbjct: 4   NIVEFKHVSFTYPDSKKPAL-NDISFSIPRGSWTALIGHNGSGKSTISKLING------- 55

Query: 72  DVVQVLNRSSFHDTQLVCSGDLSYLGGSWS--KTVGSAGEIP---LQGDFSAEHMIFGVE 126
               +L      ++++   G        W   + VG   + P     G    + + FG+E
Sbjct: 56  ----LLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLE 111

Query: 127 GSDPVRRERLIELL-DIDLQWRM--------HKVSDGQRRRVQICMGLLHPFKVLLLDEI 177
               V R  +I+++ D+     M          +S GQ++RV I   L    K+++LDE 
Sbjct: 112 NRA-VPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDES 170

Query: 178 TVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL 229
           T  LD   +  +L   +   ++   T++  TH  D     A  +  + DG+L
Sbjct: 171 TSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANM-ADQVLVLDDGKL 221

Length = 282

>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 52/227 (22%), Positives = 90/227 (39%), Gaps = 17/227 (7%)

Query: 21  FSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKIL-------AGKHMVGGRDV 73
           FSY      P+       + PG    LVG +GSGK+T+  +L        G+ ++ G  +
Sbjct: 486 FSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPL 545

Query: 74  VQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRR 133
           VQ  +    H  Q+   G    L   +S +V       L      E M      +     
Sbjct: 546 VQ-YDHHYLH-RQVALVGQEPVL---FSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFI 600

Query: 134 ERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFF 193
                  D ++  +  ++S GQ++R+ I   L+   +VL+LDE T  LD  A  + L   
Sbjct: 601 MEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALD--AECEQL--L 656

Query: 194 KDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDE 240
           ++   +   T++   H    +E  A  +  ++ G +       +L E
Sbjct: 657 QESRSRASRTVLLIAHRLSTVER-ADQILVLKKGSVVEMGTHKQLME 702

[Transport and binding proteins, Other]. Length = 711

>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 46/196 (23%), Positives = 78/196 (39%), Gaps = 48/196 (24%)

Query: 41  PGSRCLLVGANGSGKTTLLKILAG---KHMVGGRDVV---QVLNRSSFHDTQLVCS---- 90
           PG    ++G++G+GKTTL+  LA    K + G   V+     ++         + +    
Sbjct: 50  PGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMR---AISAYVQQ 106

Query: 91  GDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIF------GVEGSDPVRRERLIELLD--- 141
            DL ++    + TV              EH++F          +   +RER+ E+L    
Sbjct: 107 DDL-FIP---TLTV-------------REHLMFQAHLRMPRRVTKKEKRERVDEVLQALG 149

Query: 142 --------IDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFF 193
                   I +  R+  +S G+R+R+     LL    +L  DE T  LD      ++   
Sbjct: 150 LRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVL 209

Query: 194 KDECEQRGATIVYATH 209
           K    Q+G TI+   H
Sbjct: 210 KGLA-QKGKTIICTIH 224

[Transport and binding proteins, Other]. Length = 617

>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system

 Score = 47.9 bits (115), Expect = 1e-06
 Identities = 52/193 (26%), Positives = 82/193 (42%), Gaps = 29/193 (15%)

Query: 34  DFNLGISPGSRCLLVGANGSGKTTLLKILAG--KHMVGGRDVVQVLNRSSFHDTQLVCSG 91
           D +L I  G    L+G +G GK+TLL++L      + G  D  +VL      D + +   
Sbjct: 18  DISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVL-----LDGKDIYDL 72

Query: 92  DLSYLGGSWSKTVGSAGEIPLQGDFS-AEHMIFGV----EGSDPVRRERLIELLDIDLQW 146
           D+  L     + VG   + P     S  +++ +G+            ER+ E L     W
Sbjct: 73  DVDVL--ELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALW 130

Query: 147 R-------MHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARM---DLLDFFKDE 196
                      +S GQ++R+ +   L +  +VLLLDE T  LD ++     +L+   K E
Sbjct: 131 DEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE 190

Query: 197 CEQRGATIVYATH 209
                 TIV  TH
Sbjct: 191 -----YTIVIVTH 198

Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227

>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 47/183 (25%), Positives = 70/183 (38%), Gaps = 40/183 (21%)

Query: 21  FSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKIL-------AGKHMVGGRDV 73
           F+Y      P     NL + PG    LVG +G+GK+TL ++L       +G+ ++ G D+
Sbjct: 345 FAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDL 404

Query: 74  VQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMI-FG-VEGSDP- 130
            Q L+ +       +   D                        S    I +G  + +D  
Sbjct: 405 RQ-LDPAELRARMALVPQDPVLFAA------------------SVMENIRYGRPDATDEE 445

Query: 131 VRR-----------ERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITV 179
           V               L E  D  L  R   +S GQR+R+ I   +L    +LLLDE T 
Sbjct: 446 VEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATS 505

Query: 180 DLD 182
            LD
Sbjct: 506 ALD 508

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576

>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein

 Score = 47.9 bits (114), Expect = 1e-06
 Identities = 56/196 (28%), Positives = 88/196 (44%), Gaps = 44/196 (22%)

Query: 34  DFNLGISPGSRCLLVGANGSGKTTLLKILA-------GKHMVGGRDVVQVLNRSS----- 81
           D NL +  GS   L+G +GSGK+TLL+I+A       G+  + G+D  +V  R       
Sbjct: 18  DVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFV 77

Query: 82  FHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVR---RERLIE 138
           F    L       +L      TV              +++ FG+E     +   + R+ E
Sbjct: 78  FQHYAL-----FKHL------TV-------------RDNIAFGLEIRKHPKAKIKARVEE 113

Query: 139 LLDI----DLQWRM-HKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFF 193
           LL++     L  R  +++S GQR+RV +   L    +VLLLDE    LD   R +L  + 
Sbjct: 114 LLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWL 173

Query: 194 KDECEQRGATIVYATH 209
           +   ++   T V+ TH
Sbjct: 174 RKLHDEVHVTTVFVTH 189

[Transport and binding proteins, Anions]. Length = 237

>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 56/193 (29%), Positives = 88/193 (45%), Gaps = 29/193 (15%)

Query: 34  DFNLGISPGSRCLLVGANGSGKTT----LLKILA--GKHMVGGRDVVQVLNRSSF----H 83
             +L +  G    LVG +GSGK+T    LL+++   G+    G+D+   L+R        
Sbjct: 305 GISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDI-DGLSRKEMRPLRR 363

Query: 84  DTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIEL---- 139
             Q+V       L  S   TVG   E  L         +   + S   R +R+IE     
Sbjct: 364 RMQVVFQDPYGSL--SPRMTVGQIIEEGL--------RVHEPKLSAAERDQRVIEALEEV 413

Query: 140 -LDIDLQWRM-HKVSDGQRRRVQICMGL-LHPFKVLLLDEITVDLDVVARMDLLDFFKDE 196
            LD   + R  H+ S GQR+R+ I   L L P +++LLDE T  LD   +  +LD  +D 
Sbjct: 414 GLDPATRNRYPHEFSGGQRQRIAIARALILKP-ELILLDEPTSALDRSVQAQVLDLLRDL 472

Query: 197 CEQRGATIVYATH 209
            ++ G + ++ +H
Sbjct: 473 QQKHGLSYLFISH 485

Length = 534

>gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional

 Score = 47.5 bits (113), Expect = 2e-06
 Identities = 45/176 (25%), Positives = 78/176 (44%), Gaps = 39/176 (22%)

Query: 22  SYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAG-KHMVGGRDVVQVLNRS 80
           ++  N++P +F   +  +  G   L+ G NG+GKTTLL++LAG  H+  G+  +Q+    
Sbjct: 18  AFSRNEEP-VFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQ--IQI---- 70

Query: 81  SFHDTQLVCSGD-------LSYLGGSWSKTVGSAGEIPLQGDFSA---EHMIFGVEGSDP 130
              D +    GD       L +L G             L+ D S     H + G+ G   
Sbjct: 71  ---DGKTATRGDRSRFMAYLGHLPG-------------LKADLSTLENLHFLCGLHGRRA 114

Query: 131 VRRE----RLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLD 182
            +       ++ L   +    + ++S GQ++R+ +    L P  + LLDE   +LD
Sbjct: 115 KQMPGSALAIVGLAGYE-DTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLD 169

Length = 214

>gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 51/189 (26%), Positives = 89/189 (47%), Gaps = 20/189 (10%)

Query: 30  PLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLV- 88
           P+  + +L ++ G   +L G +GSGK+TLL+ L   ++    D  Q+L R   H+ + V 
Sbjct: 25  PVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLP---DEGQILVR---HEGEWVD 78

Query: 89  -CSGDLSYLGGSWSKTVGSAGE----IPLQG--DFSAEHMI-FGVEGSDPVRRER-LIEL 139
             + +   +      T+G   +    IP     D  AE ++  GV       +   L+  
Sbjct: 79  LVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTR 138

Query: 140 LDIDLQ-WRM--HKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDE 196
           L++  + W +     S G+++RV I  G +  + +LLLDE T  LD   R  +++    E
Sbjct: 139 LNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELI-RE 197

Query: 197 CEQRGATIV 205
            + RGA +V
Sbjct: 198 AKARGAALV 206

Length = 235

>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

 Score = 47.2 bits (113), Expect = 3e-06
 Identities = 53/194 (27%), Positives = 86/194 (44%), Gaps = 33/194 (17%)

Query: 34  DFNLGISPGSRCLLVGANGSGKTTLLKIL-------AGKHMVGGRDVVQV---------L 77
           D +L + PG    L+G NG+GKTTL  ++       +G  +  GRD+  +         +
Sbjct: 22  DVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGI 81

Query: 78  NRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLI 137
            R +F  T+L     L+ L    +  VG+   + L G              +   RER  
Sbjct: 82  AR-TFQITRL--FPGLTVLE---NVAVGAHARLGLSGLLGRP----RARKEEREARERAR 131

Query: 138 ELLD-IDLQWRMH----KVSDGQRRRVQICMGL-LHPFKVLLLDEITVDLDVVARMDLLD 191
           ELL+ + L          +S GQ+RR++I   L   P K+LLLDE    L+     +L +
Sbjct: 132 ELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQP-KLLLLDEPAAGLNPEETEELAE 190

Query: 192 FFKDECEQRGATIV 205
             ++  ++ G TI+
Sbjct: 191 LIRELRDRGGVTIL 204

Length = 250

>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed

 Score = 47.0 bits (112), Expect = 3e-06
 Identities = 61/219 (27%), Positives = 96/219 (43%), Gaps = 42/219 (19%)

Query: 30  PLFYDFNLGISPGSRCLLVGANGSGKTTLLK-------ILAGKHMVGGRDVVQVLNRSSF 82
            + ++ +L I  G   +++G +GSGK+TLL+       I +G  +V G  V         
Sbjct: 15  QVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKV-----NDPK 69

Query: 83  HDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDF-----SAEHMIFG---VEGSDPVRRE 134
            D +L+                  AG +  Q        + E+++FG   V G+     E
Sbjct: 70  VDERLIRQ---------------EAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAE 114

Query: 135 RL-IELLD-IDLQWRMH----KVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMD 188
           +   ELL  + L  R H    ++S GQ++RV I   L    K++L DE T  LD   R +
Sbjct: 115 KQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHE 174

Query: 189 LLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDG 227
           +L   +D  E+ G T+V  TH     E  A+ L +I  G
Sbjct: 175 VLKVMQDLAEE-GMTMVIVTHEIGFAEKVASRLIFIDKG 212

Length = 240

>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional

 Score = 47.3 bits (112), Expect = 3e-06
 Identities = 53/202 (26%), Positives = 87/202 (43%), Gaps = 36/202 (17%)

Query: 36  NLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDV----VQVLNRSSFHDTQLVCSG 91
           +L I  G    L+G +GSGK+TLL+ L+G  ++ G       +++L R+      +   G
Sbjct: 24  DLNIHHGEMVALLGPSGSGKSTLLRHLSG--LITGDKSAGSHIELLGRT------VQREG 75

Query: 92  DLSYLGGSWSKTVGSAGEIPLQGDFS-----AEHMIFGVEGSDPVRR------------E 134
            L+       K+  + G I  Q +        E+++ G  GS P  R             
Sbjct: 76  RLA---RDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQR 132

Query: 135 RLIELLDIDL----QWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLL 190
            L  L  + +      R+  +S GQ++RV I   L+   KV+L DE    LD  +   ++
Sbjct: 133 ALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVM 192

Query: 191 DFFKDECEQRGATIVYATHIFD 212
           D  +D  +  G T+V   H  D
Sbjct: 193 DTLRDINQNDGITVVVTLHQVD 214

Length = 262

>gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 46.7 bits (111), Expect = 3e-06
 Identities = 50/199 (25%), Positives = 69/199 (34%), Gaps = 42/199 (21%)

Query: 31  LFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS 90
           L  + N  I+ G    L+G +G GK+TLL  + G                     Q  C+
Sbjct: 17  LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIG-----------------ALAGQFSCT 59

Query: 91  GDLSYLGGSWSKTVGSAGE---IPLQGDFSAEHMIFG----------VEGS-------DP 130
           G+L +L       + +A     I  Q      H+  G          ++G+         
Sbjct: 60  GEL-WLNEQRLDMLPAAQRQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAA 118

Query: 131 VRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLL 190
           + R  L      D       +S GQR RV +   LL   K LLLDE    LDV  R    
Sbjct: 119 LERSGLDGAFHQDPA----TLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFR 174

Query: 191 DFFKDECEQRGATIVYATH 209
            +   E    G   V  TH
Sbjct: 175 QWVFSEVRAAGIPTVQVTH 193

Length = 213

>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

 Score = 47.5 bits (114), Expect = 4e-06
 Identities = 54/205 (26%), Positives = 85/205 (41%), Gaps = 57/205 (27%)

Query: 34  DFNLGISPGSRCLLVGANGSGKTTLLKIL-------AGKHMVGGRDVVQVLNRSSFHDTQ 86
           D +L +  G    L+G NG+GK+TL+KIL       +G+  V G++V             
Sbjct: 22  DVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEV-------RIKS-- 72

Query: 87  LVCSGDLSYLGGSWSKTVGSAGEI-------PLQGDFS-AEHMIFGVEGSDPVR------ 132
                D   LG            I        L    + AE++I G+E S          
Sbjct: 73  ---PRDAIRLG------------IGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQA 117

Query: 133 RERLIEL-----LDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDL---DVV 184
           R R+ EL     L +D   ++  +S G+++RV+I   L    ++L+LDE T  L   +  
Sbjct: 118 RARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEAD 177

Query: 185 ARMDLLDFFKDECEQRGATIVYATH 209
              ++L     E    G TI++ TH
Sbjct: 178 ELFEILRRLAAE----GKTIIFITH 198

Length = 501

>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein

 Score = 46.7 bits (111), Expect = 4e-06
 Identities = 46/201 (22%), Positives = 79/201 (39%), Gaps = 40/201 (19%)

Query: 35  FNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLS 94
            N  ++ G +  L+G +GSGK+T+L+IL              +      + Q+   G+  
Sbjct: 19  LNFSVAAGEKVALIGPSGSGKSTILRIL--------------MTLEPIDEGQIQVEGEQL 64

Query: 95  YLGGSWSKTVGSAGEIPLQGDFSAEHMIFG--------------------VEGSDPVR-R 133
           Y     +  +  A E  L+   +   M+F                     V G       
Sbjct: 65  YHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAE 124

Query: 134 ERLIELLDI-----DLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMD 188
           +R +ELLD+            ++S GQ++RV I   L    KV+L DE+T  LD     +
Sbjct: 125 KRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGE 184

Query: 189 LLDFFKDECEQRGATIVYATH 209
           +L+  +    +   T++  TH
Sbjct: 185 VLNVIRRLASEHDLTMLLVTH 205

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252

>gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 47.0 bits (112), Expect = 4e-06
 Identities = 46/209 (22%), Positives = 97/209 (46%), Gaps = 35/209 (16%)

Query: 34  DFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL 93
           + +  + PG    L+G NG+GKTT  +++ G           +L  +          G++
Sbjct: 20  NISFEVPPGEIFGLLGPNGAGKTTTFRMILG-----------LLEPTE---------GEI 59

Query: 94  SYLGGSWSKTVGSA-GEIP----LQGDFSAEHMIF------GVEGSDPVRR-ERLIELLD 141
           ++ GG  S+ + +  G +P    L    + E  +       G+  ++  ++ +  +E L+
Sbjct: 60  TWNGGPLSQEIKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLE 119

Query: 142 I--DLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQ 199
           I      ++ ++S G ++++Q    ++H  ++L+LDE    LD V    L D   +  E 
Sbjct: 120 IVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKE- 178

Query: 200 RGATIVYATHIFDGLETWATHLAYIQDGE 228
            GATI++++H  + +E     L  ++ G+
Sbjct: 179 EGATIIFSSHRMEHVEELCDRLLMLKKGQ 207

Length = 300

>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit

 Score = 46.4 bits (110), Expect = 4e-06
 Identities = 56/193 (29%), Positives = 75/193 (38%), Gaps = 42/193 (21%)

Query: 37  LGISPGSRCLLVGANGSGKTTLLKIL-------AGKHMVGGR-------DVVQVLNRSSF 82
           L    G    L+G NG+GKTTLL+ +        G   V G         +  V  R  F
Sbjct: 1   LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEF 60

Query: 83  ------HDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERL 136
                      V SG   ++G  W +        P   DF+A          D +RR  L
Sbjct: 61  AWDFPISVAHTVMSGRTGHIG--WLRR-------PCVADFAAV--------RDALRRVGL 103

Query: 137 IELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDE 196
            EL D  +     ++S GQR+RV +   L     VLLLDE    LD+  +  L + F  E
Sbjct: 104 TELADRPVG----ELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFI-E 158

Query: 197 CEQRGATIVYATH 209
               G  I+  TH
Sbjct: 159 LAGAGTAILMTTH 171

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223

>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family

 Score = 47.6 bits (114), Expect = 4e-06
 Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 1/44 (2%)

Query: 21  FSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAG 64
           F+Y G + P L  + +L I PG +  ++G  GSGK+TLLK+L G
Sbjct: 471 FAYPGQETPAL-DNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLG 513

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694

>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL

 Score = 46.2 bits (110), Expect = 4e-06
 Identities = 49/198 (24%), Positives = 85/198 (42%), Gaps = 30/198 (15%)

Query: 30  PLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMV-GGRDVVQVLNRSSFHDTQLV 88
           P+  + +L ++ G    L G +G+GK+TLLK L   ++   GR  + V +  ++ D    
Sbjct: 22  PVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGR--ILVRHEGAWVDLAQA 79

Query: 89  CSGDLSYLGGSWSKTVG------------SAGEI---PLQGDFSAEHMIFGVEGSDPVRR 133
              ++  +     KT+G            SA E+   PL  +             + + R
Sbjct: 80  SPREVLEVR---RKTIGYVSQFLRVIPRVSALEVVAEPLL-ERGVPREAARARARELLAR 135

Query: 134 ERLIELLDIDLQWRMH--KVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLD 191
             + E L     W +     S G+++RV I  G +  + +LLLDE T  LD   R  +++
Sbjct: 136 LNIPERL-----WHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVE 190

Query: 192 FFKDECEQRGATIVYATH 209
               E + RGA ++   H
Sbjct: 191 LIA-EAKARGAALIGIFH 207

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224

>gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 46.2 bits (110), Expect = 7e-06
 Identities = 57/228 (25%), Positives = 95/228 (41%), Gaps = 57/228 (25%)

Query: 13  SIKVCGMQFSYEGNDKPPL----FYDFNLGISPGSRCLLVGANGSGKTT-------LLKI 61
           SIK+  +   Y   +  P       + N+ I  G    L+G  GSGK+T       LLK 
Sbjct: 2   SIKIENLTHIY--MEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKP 59

Query: 62  LAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHM 121
            +GK ++ G D+          D ++     LS +     K VG   + P       E+ 
Sbjct: 60  TSGKIIIDGVDIT---------DKKV----KLSDI----RKKVGLVFQYP-------EYQ 95

Query: 122 IF---------------GVEGSDPVRR-ERLIELLDIDLQWRMHK----VSDGQRRRVQI 161
           +F               G+   +   R +R + ++ +D +    K    +S GQ+RRV I
Sbjct: 96  LFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAI 155

Query: 162 CMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATH 209
              +    K+L+LDE T  LD   R ++L+  K+  ++   TI+  +H
Sbjct: 156 AGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSH 203

Length = 287

>gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D

 Score = 45.2 bits (108), Expect = 7e-06
 Identities = 14/31 (45%), Positives = 21/31 (67%)

Query: 34 DFNLGISPGSRCLLVGANGSGKTTLLKILAG 64
          D +  I PG R L+ G +G+GK++L + LAG
Sbjct: 19 DLSFEIKPGDRLLITGPSGTGKSSLFRALAG 49

Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166

>gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein

 Score = 46.9 bits (112), Expect = 7e-06
 Identities = 57/192 (29%), Positives = 83/192 (43%), Gaps = 44/192 (22%)

Query: 13  SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKIL-------AGK 65
           +I+V  + F Y   D P +  D +L I PG    +VG +GSGK+TLL++L       +G 
Sbjct: 451 AIEVDRVTFRY-RPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGS 509

Query: 66  HMVGGRDV----VQVLNRSSFHDTQL-VCSGDLSYLGGS-WSKTVGSAGEIPLQGDFSAE 119
               G+D+    VQ + R      QL V   +   + GS +    G A  + L   + A 
Sbjct: 510 VFYDGQDLAGLDVQAVRR------QLGVVLQNGRLMSGSIFENIAGGAP-LTLDEAWEAA 562

Query: 120 HMIFGVEGSDPVRRERLIELLDI-DLQWRMHKV--------SDGQRRRVQICMGLLHPFK 170
            M  G+               DI  +   MH V        S GQR+R+ I   L+   +
Sbjct: 563 RMA-GLAE-------------DIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPR 608

Query: 171 VLLLDEITVDLD 182
           +LL DE T  LD
Sbjct: 609 ILLFDEATSALD 620

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686

>gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

 Score = 45.7 bits (109), Expect = 9e-06
 Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 3/45 (6%)

Query: 23 YEGNDKPPLFY---DFNLGISPGSRCLLVGANGSGKTTLLKILAG 64
           +G  K   F+   D +  I  G R  ++G NG+GK+TLLK++AG
Sbjct: 31 AKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAG 75

Length = 249

>gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor

 Score = 45.5 bits (108), Expect = 1e-05
 Identities = 42/161 (26%), Positives = 68/161 (42%), Gaps = 27/161 (16%)

Query: 34  DFNLGISPGS-----RCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLV 88
           +F L +  GS        ++G NG GKTT +K+LAG       D+   L+  S+    + 
Sbjct: 12  EFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIK 71

Query: 89  C--SGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQW 146
               G +  L  S +K   +             H  F  E + P++ E++++    +L  
Sbjct: 72  ADYEGTVRDLLSSITKDFYT-------------HPYFKTEIAKPLQIEQILDREVPEL-- 116

Query: 147 RMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARM 187
                S G+ +RV I   L     + LLDE +  LDV  R+
Sbjct: 117 -----SGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRL 152

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246

>gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional

 Score = 45.5 bits (108), Expect = 1e-05
 Identities = 54/225 (24%), Positives = 88/225 (39%), Gaps = 45/225 (20%)

Query: 29  PPLFYDFNLGISPGSRCLLVGANGSGKT----TLLKIL-AGKHMVGGRDVVQVLNRSSFH 83
            PL +  +L +  G    LVG +GSGK+      L IL AG     GR ++         
Sbjct: 16  QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLL--------- 66

Query: 84  DTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSA--------EHMI-----FGVEGSDP 130
           D + V    L        + + +     +Q   SA         H        G    D 
Sbjct: 67  DGKPVAPCALR------GRKIATI----MQNPRSAFNPLHTMHTHARETCLALGKPADDA 116

Query: 131 VRRERLIE--LLDIDLQWRMH--KVSDGQRRRVQICMGLL--HPFKVLLLDEITVDLDVV 184
                L    L +     +++  ++S G  +R+ I + LL   PF  ++ DE T DLDVV
Sbjct: 117 TLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPF--IIADEPTTDLDVV 174

Query: 185 ARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL 229
           A+  +LD  +   ++R   ++  TH    +   A  +A +  G +
Sbjct: 175 AQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRI 219

Length = 254

>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 48/191 (25%), Positives = 80/191 (41%), Gaps = 55/191 (28%)

Query: 47  LVGANGSGKTTLLKILAGKH-------MVGGRDVVQVLNRSSFH--------DTQLVCSG 91
           L+G NG+GK+TLLKIL+G +       ++ G+++      ++          +  LV   
Sbjct: 35  LMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLV--P 92

Query: 92  DLS-----YLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVR--RERLIEL-LDID 143
           +++     YLG           ++P +G          V         RE+L  L +DID
Sbjct: 93  EMTVAENLYLG-----------QLPHKGGI--------VNRRLLNYEAREQLEHLGVDID 133

Query: 144 LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVAR-----MDLLDFFKDECE 198
               +  +S GQR+ V+I   L    +V+  DE T  L   AR       ++   + E  
Sbjct: 134 PDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLS--AREIEQLFRVIRELRAE-- 189

Query: 199 QRGATIVYATH 209
             G  I+Y +H
Sbjct: 190 --GRVILYVSH 198

Length = 501

>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 58/213 (27%), Positives = 89/213 (41%), Gaps = 51/213 (23%)

Query: 30  PLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVC 89
           PL  +  L I    R  LVG NG+GK+TL+KIL G+          +L+     D +++ 
Sbjct: 17  PLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGE---------VLLD-----DGRIIY 62

Query: 90  SGDL--SYLGGSWSKTV-GS-----AGEIPLQGDF-SAEHMIFGVEGSDPVRR-----ER 135
             DL  + L     + V G+     A  I  Q ++    H I  +  +DP  +      +
Sbjct: 63  EQDLIVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAK 122

Query: 136 LIELLDIDLQW----RMHKV---------------SDGQRRRVQICMGLLHPFKVLLLDE 176
           L E LD    W    R+++V               S G  R+  +   L+    VLLLDE
Sbjct: 123 LQEQLDHHNLWQLENRINEVLAQLGLDPDAALSSLSGGWLRKAALGRALVSNPDVLLLDE 182

Query: 177 ITVDLDVVARMDLLDFFKDECEQRGATIVYATH 209
            T  LD+     L  F K     +G+ I++ +H
Sbjct: 183 PTNHLDIETIEWLEGFLKT---FQGS-IIFISH 211

Length = 635

>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities

 Score = 44.3 bits (104), Expect = 1e-05
 Identities = 39/174 (22%), Positives = 56/174 (32%), Gaps = 55/174 (31%)

Query: 41  PGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSW 100
           PG   L+VG  GSGKTTL + LA +    G  V+                    Y+ G  
Sbjct: 1   PGEVILIVGPPGSGKTTLARALARELGPPGGGVI--------------------YIDGED 40

Query: 101 SKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQ 160
                                            E L +LL I +  +    S   R R+ 
Sbjct: 41  I------------------------------LEEVLDQLLLIIVGGKKASGSGELRLRLA 70

Query: 161 ICMGLLHPFKVLLLDEITVDLDVVARMDLLD-----FFKDECEQRGATIVYATH 209
           + +       VL+LDEIT  LD      LL             ++  T++  T+
Sbjct: 71  LALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTN 124

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148

>gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional

 Score = 46.4 bits (110), Expect = 1e-05
 Identities = 52/172 (30%), Positives = 75/172 (43%), Gaps = 32/172 (18%)

Query: 21  FSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDV-----VQ 75
           F Y G   P LF + N GI   SR  +VG NG GK+T+LK+++G+       V     V+
Sbjct: 516 FGYPGG--PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVR 573

Query: 76  VLNRSSFH-DTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRE 134
           +   S  H D   + S  L Y+     +      E  L+    +    FGV G+      
Sbjct: 574 MAVFSQHHVDGLDLSSNPLLYM----MRCFPGVPEQKLRAHLGS----FGVTGN------ 619

Query: 135 RLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEIT--VDLDVV 184
                  + LQ  M+ +S GQ+ RV           +LLLDE +  +DLD V
Sbjct: 620 -------LALQ-PMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAV 663

Length = 718

>gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional

 Score = 45.5 bits (108), Expect = 1e-05
 Identities = 60/225 (26%), Positives = 92/225 (40%), Gaps = 45/225 (20%)

Query: 12  NSIKVCGMQFSYEGNDK---PPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHM- 67
             IK   + + YE N++        D NL +  G   +++G NGSGK+T+      KHM 
Sbjct: 3   EMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTI-----AKHMN 57

Query: 68  -----VGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWS--KTVGSAGEIP---LQGDFS 117
                  G+  V  L              D S     W      G   + P   +     
Sbjct: 58  ALLIPSEGKVYVDGL--------------DTSDEENLWDIRNKAGMVFQNPDNQIVATIV 103

Query: 118 AEHMIFGVE--GSDPVR-RERLIELLDIDLQWRM-----HKVSDGQRRRVQICMGLL--H 167
            E + FG E  G  P   RER+ E L     +       H +S GQ++RV I  G+L   
Sbjct: 104 EEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIA-GILAMR 162

Query: 168 PFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFD 212
           P + ++ DE T  LD   R ++++  K+  ++ G TI+  TH  +
Sbjct: 163 P-ECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYME 206

Length = 280

>gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC

 Score = 44.9 bits (107), Expect = 1e-05
 Identities = 53/191 (27%), Positives = 78/191 (40%), Gaps = 53/191 (27%)

Query: 26  NDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDT 85
            DK  L    NL +  G    ++G NGSGK+TL K +AG                  H +
Sbjct: 11  EDKEIL-KGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAG------------------HPS 51

Query: 86  QLVCSGDLSYLGGSWSK----TVGSAG---------EIPLQG----DF--SAEHMIFGVE 126
             V SG + + G    +        AG         EIP  G    +F  SA +      
Sbjct: 52  YEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIP--GVSNLEFLRSALNARRSAR 109

Query: 127 GSDPVRR-------ERLIELLDIDLQWRMHKV----SDGQRRRVQIC-MGLLHPFKVLLL 174
           G +P+         +  + LL +D ++    V    S G+++R +I  M LL P K+ +L
Sbjct: 110 GEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEP-KLAIL 168

Query: 175 DEITVDLDVVA 185
           DEI   LD+ A
Sbjct: 169 DEIDSGLDIDA 179

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243

>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 43/161 (26%), Positives = 65/161 (40%), Gaps = 29/161 (18%)

Query: 34  DFNLGISPGSRCL-----LVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLV 88
           DF L +  G         ++G NG GKTT +K+LAG           V+      +  L 
Sbjct: 354 DFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAG-----------VIKPDEGSEEDLK 402

Query: 89  CSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVE--GSDPVRRERLIELLDIDLQW 146
            S    Y+   +  TV            SA    FG     ++ V+   L +LL+  +  
Sbjct: 403 VSYKPQYISPDYDGTVE-------DLLRSAIRSAFGSSYFKTEIVKPLNLEDLLERPVD- 454

Query: 147 RMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARM 187
              ++S G+ +RV I   L     + LLDE +  LDV  R+
Sbjct: 455 ---ELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRI 492

Length = 591

>gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 9/52 (17%)

Query: 39 ISPGSRCLLVGANGSGKTTLLKILA---------GKHMVGGRDVVQVLNRSS 81
          + PG+   L+G +G+GKTTLL +LA         G+ ++ GR + +   RS+
Sbjct: 30 VKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRST 81

The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192

>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 54/214 (25%), Positives = 95/214 (44%), Gaps = 27/214 (12%)

Query: 12  NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGR 71
           N I+V  + F Y+ + +     D +  +  G    ++G NGSGK+T ++++ G       
Sbjct: 3   NIIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDG------- 55

Query: 72  DVVQVLNRSSFHDTQLVCSGDLSYLGGSWSK--TVGSAGEIP---LQGDFSAEHMIFGVE 126
               +L   S    Q++  GDL      W     +G   + P     G    + + FG+E
Sbjct: 56  ----LLEAES---GQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLE 108

Query: 127 G---SDPVRRERLIELLDI----DLQWRM-HKVSDGQRRRVQICMGLLHPFKVLLLDEIT 178
                    +ER+ E L++    D + R   ++S GQ++RV I   +    K+++LDE T
Sbjct: 109 NKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEAT 168

Query: 179 VDLDVVARMDLLDFFKDECEQRGATIVYATHIFD 212
             LD   R++L+   K   +    T++  TH  D
Sbjct: 169 SMLDPEGRLELIKTIKGIRDDYQMTVISITHDLD 202

Length = 279

>gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 49/210 (23%), Positives = 78/210 (37%), Gaps = 46/210 (21%)

Query: 24  EGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFH 83
           +G  +  +     L +  G    +VG +GSGK+TLL +LAG            L+  S  
Sbjct: 18  QGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAG------------LDDPS-- 63

Query: 84  DTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGD-----FSAEHMI---------------F 123
                 SG++  LG    K +       L+       F + H+I                
Sbjct: 64  ------SGEVRLLGQPLHK-LDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELR 116

Query: 124 GVEGSDPVRRERLIELLDIDLQWRM----HKVSDGQRRRVQICMGLLHPFKVLLLDEITV 179
           G   +D     +   L  + L  R+     ++S G+++RV +         VL  DE T 
Sbjct: 117 GESSADSRAGAK-ALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTG 175

Query: 180 DLDVVARMDLLDFFKDECEQRGATIVYATH 209
           +LD      + D       +RG T+V  TH
Sbjct: 176 NLDRATGDKIADLLFALNRERGTTLVLVTH 205

Length = 228

>gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 51/196 (26%), Positives = 83/196 (42%), Gaps = 36/196 (18%)

Query: 31  LFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMV-GGRDVVQVLNRSSFHDTQL-- 87
           L    +L + PG    ++G NG+GK+TLLK L+G+     G   +  +  +S+   +L  
Sbjct: 16  LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELAR 75

Query: 88  ---VCSGDLSYLGGSWS-KTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIE--LLD 141
              V   + S L   ++ + V   G IP +             G +P   ER+    L  
Sbjct: 76  HRAVLPQN-SSLAFPFTVQEVVQMGRIPHRS------------GREPEEDERIAAQALAA 122

Query: 142 IDLQ------WRMHKVSDGQRRRVQICMGL--LHP----FKVLLLDEITVDLDVVARMDL 189
            DL       +R   +S G+++RVQ+   L  L P     + L LDE T  LD+  +   
Sbjct: 123 TDLSGLAGRDYRT--LSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHT 180

Query: 190 LDFFKDECEQRGATIV 205
           L   +    + GA + 
Sbjct: 181 LRLARQLAREGGAVLA 196

Length = 259

>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 60/197 (30%), Positives = 86/197 (43%), Gaps = 42/197 (21%)

Query: 34  DFNLGISPGSRCLLVGANGSGKTTLLKILAG-KHMVGGRDVVQVLNRSSFHDTQLVCSGD 92
           D +L I  G    L+G +GSGKTTLL+I+AG +H   G           FH T      D
Sbjct: 20  DISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSG--------HIRFHGT------D 65

Query: 93  LSYLGGSWSKTVGSAGEIPLQGDFSAEHMI------FGVEGSDPVRRER---------LI 137
           +S L     + VG       Q      HM       FG+  +   RRER         + 
Sbjct: 66  VSRLHAR-DRKVG----FVFQHYALFRHMTVFDNIAFGL--TVLPRRERPNAAAIKAKVT 118

Query: 138 ELLDI----DLQWRM-HKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDF 192
           +LL++     L  R   ++S GQ++RV +   L    ++LLLDE    LD   R +L  +
Sbjct: 119 QLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRW 178

Query: 193 FKDECEQRGATIVYATH 209
            +   E+   T V+ TH
Sbjct: 179 LRQLHEELKFTSVFVTH 195

Length = 353

>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C

 Score = 44.1 bits (105), Expect = 3e-05
 Identities = 50/197 (25%), Positives = 78/197 (39%), Gaps = 54/197 (27%)

Query: 14  IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKIL-------AGKH 66
           I+   + FSY  ++K P+  D N  I PG    +VG  G+GKTTL+ +L        G+ 
Sbjct: 3   IEFENVNFSY--DEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQI 60

Query: 67  MVGGRDVVQVLNRSSFH--------DTQLVCSGDLS---YLGGSWS---------KTVGS 106
           ++ G D+  + +R S          DT L  SG +     LG   +         K  G+
Sbjct: 61  LIDGIDIRDI-SRKSLRSMIGVVLQDTFLF-SGTIMENIRLGRPNATDEEVIEAAKEAGA 118

Query: 107 AGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLL 166
              I                        +L    D  L      +S G+R+ + I   +L
Sbjct: 119 HDFI-----------------------MKLPNGYDTVLGENGGNLSQGERQLLAIARAML 155

Query: 167 HPFKVLLLDEITVDLDV 183
              K+L+LDE T ++D 
Sbjct: 156 RDPKILILDEATSNIDT 172

Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229

>gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK

 Score = 44.4 bits (105), Expect = 3e-05
 Identities = 52/217 (23%), Positives = 82/217 (37%), Gaps = 27/217 (12%)

Query: 32  FYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRS-SFHDTQLVCS 90
             D +  + PG    +VG +GSGK+TLL  LAG  +         + RS +  +   +  
Sbjct: 19  CRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAG-RLAPDHGTATYIMRSGAELELYQLSE 77

Query: 91  GDLSYLGGS-WS----------KTVGSAGEIPLQGDFSAEHMIFGVEGSDPVR------- 132
            +   L  + W           +   SAG      +     M  G      +R       
Sbjct: 78  AERRRLMRTEWGFVHQNPRDGLRMRVSAG-----ANIGERLMAIGARHYGNIRATAQDWL 132

Query: 133 RERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDF 192
            E  I+   ID   R    S G ++R+QI   L+   +++ +DE T  LDV  +  LLD 
Sbjct: 133 EEVEIDPTRIDDLPR--AFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDL 190

Query: 193 FKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL 229
            +      G  ++  TH        A  L  +Q G +
Sbjct: 191 LRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRV 227

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253

>gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 58/219 (26%), Positives = 89/219 (40%), Gaps = 57/219 (26%)

Query: 36  NLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSY 95
           NL I  G    L+G NGSGK+TL  +L G            L +          SG++  
Sbjct: 343 NLTIKRGELLFLIGGNGSGKSTLAMLLTG------------LYQPQ--------SGEI-L 381

Query: 96  LGGSWSKTVGSAGEIPLQGDFSA--------EHMIFGVEG--SDPVRRERLIELLDI--- 142
           L G   K V +      +  FSA        + ++ G EG  ++P   E+ +E L +   
Sbjct: 382 LDG---KPVTAEQPEDYRKLFSAVFTDFHLFDQLL-GPEGKPANPALVEKWLERLKMAHK 437

Query: 143 ----DLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVAR----MDLLDFFK 194
               D +    K+S GQ++R+ + + L     +LLLDE   D D   R      LL   +
Sbjct: 438 LELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQ 497

Query: 195 DECEQRGATIVYATH---IFDGLETWATHLAYIQDGELR 230
               + G TI   +H    F      A  L  +++G+L 
Sbjct: 498 ----EMGKTIFAISHDDHYFIH----ADRLLEMRNGQLS 528

Length = 547

>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 49/190 (25%), Positives = 85/190 (44%), Gaps = 41/190 (21%)

Query: 34  DFNLGISPGSRCLLVGANGSGKTTLLKILAG------KHMVGGR---DVVQVLNRSSFHD 84
             +L I  G    +VG +G GK+TLL++LAG        ++ G       +   R  F D
Sbjct: 30  QLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQD 89

Query: 85  TQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLD-ID 143
            +L+           W K + + G + L+G +                R+  ++ L  + 
Sbjct: 90  ARLL----------PWKKVIDNVG-LGLKGQW----------------RDAALQALAAVG 122

Query: 144 LQWRMHK----VSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQ 199
           L  R ++    +S GQ++RV +   L+H   +LLLDE    LD + R+++ D  +   +Q
Sbjct: 123 LADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQ 182

Query: 200 RGATIVYATH 209
            G T++  TH
Sbjct: 183 HGFTVLLVTH 192

Length = 257

>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional

 Score = 44.8 bits (106), Expect = 3e-05
 Identities = 46/188 (24%), Positives = 85/188 (45%), Gaps = 19/188 (10%)

Query: 34  DFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL 93
             NL + PG    L+G NG+GK+TL+K+L+G H    +  + + N +            L
Sbjct: 23  SVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHE-PTKGTITINNINYNKLDH-----KL 76

Query: 94  SY-LG-GSWSKTVGSAGEIPLQGD-FSAEHMIFGVEGSDPV----RRERLIELLD----- 141
           +  LG G   + +    E+ +  + +   H+   V G + +     R R   +L      
Sbjct: 77  AAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLK 136

Query: 142 IDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRG 201
           +DL  ++  +S   ++ ++I   L+   KV+++DE T  L     +D L    ++  + G
Sbjct: 137 VDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSL-TNKEVDYLFLIMNQLRKEG 195

Query: 202 ATIVYATH 209
             IVY +H
Sbjct: 196 TAIVYISH 203

Length = 510

>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter

 Score = 45.0 bits (106), Expect = 3e-05
 Identities = 52/200 (26%), Positives = 84/200 (42%), Gaps = 39/200 (19%)

Query: 47   LVGANGSGKTTLLKIL-------AGKHMVGGRDVVQVLN--RSSFHDTQLVCSGDLSYLG 97
             +G NG+GKTT L IL       +G  +VGG+D+   L+  R S              LG
Sbjct: 961  FLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQS--------------LG 1006

Query: 98   GSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIE----LLDIDLQWRMHK--- 150
                  +     I       AEH++F  +       E  +E    L D  L  + ++   
Sbjct: 1007 ------MCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQ 1060

Query: 151  -VSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATH 209
             +S G +R++ + +  +   KV++LDE T  +D  +R  + D       + G TI+ +TH
Sbjct: 1061 DLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLK--YRSGRTIIMSTH 1118

Query: 210  IFDGLETWATHLAYIQDGEL 229
              D  +     +A I  G L
Sbjct: 1119 HMDEADLLGDRIAIISQGRL 1138

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272

>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed

 Score = 44.0 bits (105), Expect = 5e-05
 Identities = 45/167 (26%), Positives = 71/167 (42%), Gaps = 41/167 (24%)

Query: 31  LFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHM-------VGGRDVVQVL----NR 79
           L  D +  + PG    ++G NG+GK+TL K++ G+         +G  + V++     +R
Sbjct: 339 LIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIG--ETVKLAYVDQSR 396

Query: 80  SSFHDTQLV---CSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERL 136
            +    + V    SG L  +       VG+  EIP +         F  +G D       
Sbjct: 397 DALDPNKTVWEEISGGLDII------KVGNR-EIPSRAYVGR----FNFKGGDQ------ 439

Query: 137 IELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDV 183
                   Q ++  +S G+R R+ +   L     VLLLDE T DLDV
Sbjct: 440 --------QKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDV 478

Length = 556

>gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional

 Score = 43.6 bits (104), Expect = 5e-05
 Identities = 60/221 (27%), Positives = 97/221 (43%), Gaps = 49/221 (22%)

Query: 34  DFNLGISPGSRCLLVGANGSGKTTLLKIL-------AGKHMVGGRDVVQVLNRSS----- 81
           + +L I  G    ++GA+G+GK+TL++ +       +G+ +V G+D+   L+        
Sbjct: 23  NVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTA-LSEKELRKAR 81

Query: 82  ------FHDTQLVCSGDLSYLGGSWSKTVGSAGEI--PLQGDFSAEHMIFGVEGSDPVRR 133
                 F    L     LS      S+TV     +  PL+        + G   ++   +
Sbjct: 82  RQIGMIFQHFNL-----LS------SRTV--FDNVALPLE--------LAGTPKAE--IK 118

Query: 134 ERLIELLDI-DLQWRMHK----VSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMD 188
            R+ ELL++  L  +  +    +S GQ++RV I   L    KVLL DE T  LD      
Sbjct: 119 ARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRS 178

Query: 189 LLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL 229
           +L+  KD   + G TIV  TH  D ++     +A I  G L
Sbjct: 179 ILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRL 219

Length = 343

>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional

 Score = 43.7 bits (103), Expect = 5e-05
 Identities = 61/215 (28%), Positives = 94/215 (43%), Gaps = 44/215 (20%)

Query: 34  DFNLGISPGSRCLLVGANGSGKTTLLKILAG-KHMVGGRDVVQVLNRSSFHDTQLVCSG- 91
           D +L I  G    L+GA+G GK+TLL++LAG +    G               Q++  G 
Sbjct: 37  DVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAG---------------QIMLDGV 81

Query: 92  DLSYLGGSWSKTVGSAGEIPLQGDFSA----EHMI------FGVEGSDPVRRE---RLIE 138
           DLS++            + P+   F +     HM       FG++     + E   R+ E
Sbjct: 82  DLSHV---------PPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNE 132

Query: 139 LLD-IDLQ----WRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFF 193
           +L  + +Q     + H++S GQR+RV +   L    K+LLLDE    LD   R  +    
Sbjct: 133 MLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEV 192

Query: 194 KDECEQRGATIVYATHIFDGLETWATHLAYIQDGE 228
            D  E+ G T V  TH  +   T A  +A +  G+
Sbjct: 193 VDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGK 227

Length = 377

>gnl|CDD|222036 pfam13304, AAA_21, AAA domain

 Score = 43.6 bits (102), Expect = 5e-05
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 150 KVSDGQRRRVQICMGLLHPF---KVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVY 206
            +SDG +R + + + LL       +LL+DE    L       L++  K+   ++GA +++
Sbjct: 189 GISDGTKRLLALLLALLSALPKGSLLLIDEPENGLHPKLLRKLVELLKE-LSEKGAQLIF 247

Query: 207 ATH 209
            TH
Sbjct: 248 TTH 250

Length = 256

>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional

 Score = 44.1 bits (105), Expect = 6e-05
 Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 5/46 (10%)

Query: 19 MQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAG 64
          MQF  +     PLF + ++    G+R  L+GANG GK+T +KIL G
Sbjct: 9  MQFGAK-----PLFENISVKFGGGNRYGLIGANGCGKSTFMKILGG 49

Length = 530

>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional

 Score = 43.9 bits (104), Expect = 6e-05
 Identities = 24/79 (30%), Positives = 44/79 (55%)

Query: 149 HKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYAT 208
           H++S G+R+RV I M LL   ++L+ DE T  LDV  +  +L   ++  ++    +++ T
Sbjct: 155 HQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFIT 214

Query: 209 HIFDGLETWATHLAYIQDG 227
           H    +   A  +A +Q+G
Sbjct: 215 HNLSIVRKLADRVAVMQNG 233

Length = 529

>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system

 Score = 43.4 bits (103), Expect = 6e-05
 Identities = 57/222 (25%), Positives = 94/222 (42%), Gaps = 48/222 (21%)

Query: 33  YDFNLGISPGSRCLLVGANGSGKTTLLKIL-------AGKHMVGGRDVVQVLNRSSFHDT 85
            D +L +  G   +++G +GSGK+TLL+ +       +GK ++ G+D+   ++R      
Sbjct: 41  NDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAA-MSRK----- 94

Query: 86  QLVCSGDLSYLGGSWSKTVG----SAGEIPLQGDFSAEHM------IFGVE--GSDP-VR 132
                 +L  L     K +     S   +P        H        FG+E  G     R
Sbjct: 95  ------ELRELR---RKKISMVFQSFALLP--------HRTVLENVAFGLEVQGVPRAER 137

Query: 133 RERLIELLD-IDLQWRMHK----VSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARM 187
            ER  E L+ + L+   HK    +S G ++RV +   L     +LL+DE    LD + R 
Sbjct: 138 EERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRR 197

Query: 188 DLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL 229
           ++ D       +   TIV+ TH  D        +A ++DG L
Sbjct: 198 EMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRL 239

This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269

>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional

 Score = 43.5 bits (103), Expect = 7e-05
 Identities = 56/197 (28%), Positives = 85/197 (43%), Gaps = 46/197 (23%)

Query: 34  DFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL 93
           D NL I  G   + VG +G GK+TLL+++AG                     + + SGDL
Sbjct: 21  DINLDIHEGEFVVFVGPSGCGKSTLLRMIAG--------------------LEDITSGDL 60

Query: 94  SYLGGSWSKTVGSAGE--------IPLQGDFS-AEHMIFG-----VEGSDPVRR-ERLIE 138
            ++G      V  A            L    S AE+M FG      +  +  +R  ++ E
Sbjct: 61  -FIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAE 119

Query: 139 LLDID--LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLD----VVARMDLLDF 192
           +L +   L  +   +S GQR+RV I   L+    V LLDE   +LD    V  R+++   
Sbjct: 120 VLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRL 179

Query: 193 FKDECEQRGATIVYATH 209
            K    + G T++Y TH
Sbjct: 180 HK----RLGRTMIYVTH 192

Length = 369

>gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 43.2 bits (102), Expect = 7e-05
 Identities = 52/195 (26%), Positives = 78/195 (40%), Gaps = 23/195 (11%)

Query: 32  FYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG 91
             D +  + PG    +VG +GSGKTTLLK ++G+       V   +      D   +   
Sbjct: 22  CRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEA 81

Query: 92  DLSYLGGS-WSKTVGSAGEIPLQG---DFSA------EHMIFGVEGSDPVRRERL----- 136
           +   L  + W    G   + P  G     SA        M  G      +R E       
Sbjct: 82  ERRRLLRTEW----GFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEE 137

Query: 137 --IELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFK 194
             I+L  ID   R    S G ++R+QI   L+   +++ +DE T  LDV  +  LLD  +
Sbjct: 138 VEIDLDRIDDLPR--TFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLR 195

Query: 195 DECEQRGATIVYATH 209
               + G  +V  TH
Sbjct: 196 GLVRELGLAVVIVTH 210

Length = 258

>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D

 Score = 42.8 bits (101), Expect = 7e-05
 Identities = 51/191 (26%), Positives = 78/191 (40%), Gaps = 29/191 (15%)

Query: 34  DFNLGISPGSRCLLVGANGSGKTTLLKILAGKH-------MVGGRDVVQVLNRSSFHDTQ 86
             NL I  G    L+G +G GK+TLL +++G         ++ G+ + +          +
Sbjct: 3   GVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEP------GPDR 56

Query: 87  LVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLD-IDLQ 145
           +V   + S L   W  TV     I L  D     +      S   RR  + E +  + L 
Sbjct: 57  MVVFQNYSLL--PW-LTVRE--NIALAVDRVLPDL------SKSERRAIVEEHIALVGLT 105

Query: 146 WRMHK----VSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRG 201
               K    +S G ++RV I   L    KVLLLDE    LD + R +L +      E+  
Sbjct: 106 EAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHR 165

Query: 202 ATIVYATHIFD 212
            T++  TH  D
Sbjct: 166 VTVLMVTHDVD 176

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230

>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter

 Score = 42.6 bits (101), Expect = 8e-05
 Identities = 31/83 (37%), Positives = 43/83 (51%), Gaps = 7/83 (8%)

Query: 133 RERLIELLDI----DLQWRM-HKVSDGQRRRVQICMGL-LHPFKVLLLDEITVDLDVVAR 186
           +ER+ E LD+        R   ++S GQ++RV I   L   P KVLLLDE    LD+  R
Sbjct: 108 KERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEP-KVLLLDEPLGALDLKLR 166

Query: 187 MDLLDFFKDECEQRGATIVYATH 209
            D+    K   ++ G T V+ TH
Sbjct: 167 KDMQLELKRLQKELGITFVFVTH 189

PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232

>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family

 Score = 43.6 bits (103), Expect = 8e-05
 Identities = 51/201 (25%), Positives = 81/201 (40%), Gaps = 40/201 (19%)

Query: 3   DGMNENEKLN-SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKI 61
            G+    +L  +I    ++F Y   D P +  + NL I PG    +VG +GSGK+TL K+
Sbjct: 444 AGLAALPELRGAITFENIRFRYA-PDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKL 502

Query: 62  LA-------GKHMVGGRDVVQ------------VLNRSSFHDTQLVCSGDLSYLGGSWSK 102
           L        G+ +V G D+              VL  +      +  +  L   G  +  
Sbjct: 503 LQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEH 562

Query: 103 TVGSAGEIPLQGDFSAEHMIFGV-EGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQI 161
            + +A    L G   A   I  + +G +    E+   L            S GQR+R+ I
Sbjct: 563 VIHAA---KLAG---AHDFISELPQGYNTEVGEKGANL------------SGGQRQRIAI 604

Query: 162 CMGLLHPFKVLLLDEITVDLD 182
              L+   ++L+ DE T  LD
Sbjct: 605 ARALVGNPRILIFDEATSALD 625

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694

>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter

 Score = 42.7 bits (101), Expect = 8e-05
 Identities = 33/102 (32%), Positives = 54/102 (52%), Gaps = 2/102 (1%)

Query: 138 ELLDID--LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKD 195
           E+L ID  L  +   +S G+++RV I   L+   K+LLLDE    LDV  +  L +  K 
Sbjct: 115 EMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKK 174

Query: 196 ECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAE 237
             ++ G T+++ TH F+     A  +A + +G+L +  K  E
Sbjct: 175 IRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEE 216

Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235

>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

 Score = 43.1 bits (101), Expect = 8e-05
 Identities = 48/208 (23%), Positives = 81/208 (38%), Gaps = 25/208 (12%)

Query: 34  DFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL 93
           D +L I  G    L+G +G GKTTLL+ +AG            +  +       +   DL
Sbjct: 23  DLSLEIEAGELLALIGKSGCGKTTLLRAIAG-----------FVKAAGLTGRIAIADRDL 71

Query: 94  SYL---GGSWSKTVGSAGEIPLQGDFSAEHMIFGVEG---SDPVRRERLIELLDI----D 143
           ++        +    +    P       +++ FG+           ER+ + L +    D
Sbjct: 72  THAPPHKRGLALLFQNYALFPHLKVE--DNVAFGLRAQKMPKADIAERVADALKLVGLGD 129

Query: 144 LQWRM-HKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQ-RG 201
               +  ++S G ++R+ I   +     VLLLDE    LD   R ++ +      E+   
Sbjct: 130 AAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPE 189

Query: 202 ATIVYATHIFDGLETWATHLAYIQDGEL 229
            TI+  TH  D   T A     ++DG L
Sbjct: 190 LTILCVTHDQDDALTLADKAGIMKDGRL 217

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362

>gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional

 Score = 43.2 bits (102), Expect = 9e-05
 Identities = 28/70 (40%), Positives = 35/70 (50%), Gaps = 10/70 (14%)

Query: 147 RM----HKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVAR---MDLLDFFKDECEQ 199
           RM    H+ S G R+RV I M LL   K+L+ DE T  LDV  +   M LL+  K E   
Sbjct: 154 RMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREF-- 211

Query: 200 RGATIVYATH 209
               I+  TH
Sbjct: 212 -NTAIIMITH 220

Length = 330

>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional

 Score = 42.5 bits (100), Expect = 1e-04
 Identities = 50/181 (27%), Positives = 82/181 (45%), Gaps = 42/181 (23%)

Query: 24  EGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFH 83
           EG+ +  + ++ +  I  G    +VG++GSGK+TLL      H++GG D           
Sbjct: 17  EGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLL------HLLGGLDTPT-------- 62

Query: 84  DTQLVCSGDLSYLGGSWSKTVGSA---------GEI----PLQGDFSAEH---MIFGVEG 127
                 SGD+ + G   SK   +A         G I     L  DF+A     M   +  
Sbjct: 63  ------SGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGK 116

Query: 128 SDPVR-RERLIELLD-IDLQWRMH----KVSDGQRRRVQICMGLLHPFKVLLLDEITVDL 181
             P     R +E+L  + L+ R +    ++S G+R+RV I   L++  +++L DE T +L
Sbjct: 117 KKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNL 176

Query: 182 D 182
           D
Sbjct: 177 D 177

Length = 233

>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter

 Score = 42.0 bits (100), Expect = 1e-04
 Identities = 44/197 (22%), Positives = 76/197 (38%), Gaps = 53/197 (26%)

Query: 34  DFNLGISPGSRCLLVGANGSGKTTLLKILAGKH-------MVGGRDVVQVLNRSSFHDTQ 86
             +L +  G    L+G NG+GKTTLLK + G            GRD   +         +
Sbjct: 18  GVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRD---ITGLPPH---E 71

Query: 87  LVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFG---VE---------GSDPVRRE 134
              +G + Y              +P +G       IF    VE              R+ 
Sbjct: 72  RARAG-IGY--------------VP-EG-----RRIFPELTVEENLLLGAYARRRAKRKA 110

Query: 135 RLIELLDI--DLQWRMHK----VSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMD 188
           RL  + ++   L+ R  +    +S G+++ + I   L+   K+LLLDE +  L      +
Sbjct: 111 RLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEE 170

Query: 189 LLDFFKDECEQRGATIV 205
           + +  ++  +  G TI+
Sbjct: 171 IFEAIRELRD-EGVTIL 186

LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222

>gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

 Score = 42.5 bits (100), Expect = 1e-04
 Identities = 46/192 (23%), Positives = 80/192 (41%), Gaps = 43/192 (22%)

Query: 47  LVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLG--------- 97
           ++G NGSGK+TL K+LAG        +++  +     D   +  GD SY           
Sbjct: 44  IIGENGSGKSTLAKMLAG--------MIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQD 95

Query: 98  GSWS----KTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIE------LLDIDLQWR 147
            S S    + +    + PL             +     R +++IE      LL     + 
Sbjct: 96  PSTSLNPRQRISQILDFPL---------RLNTDLEPEQREKQIIETLRQVGLLPDHASYY 146

Query: 148 MHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYA 207
            H ++ GQ++R+ +   L+   KV++ DE    LD+  R  L++   +  E++G + +Y 
Sbjct: 147 PHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYV 206

Query: 208 T-------HIFD 212
           T       HI D
Sbjct: 207 TQHLGMMKHISD 218

Length = 267

>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 52/193 (26%), Positives = 86/193 (44%), Gaps = 38/193 (19%)

Query: 34  DFNLGISPGSRCLLVGANGSGKTTLLKILAG-------KHMVGGRDVVQ--VLNRSSFHD 84
           + NL I  G+   L+G +G GKTT+L+++AG       +  + G DV    +  R     
Sbjct: 24  NLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRD---- 79

Query: 85  TQLVCSGDLSYL---GGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLD 141
              +C    SY      S  + VG    + + G    E            R++R+ E L+
Sbjct: 80  ---ICMVFQSYALFPHMSLGENVGYG--LKMLGVPKEE------------RKQRVKEALE 122

Query: 142 -IDL----QWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDE 196
            +DL       + ++S GQ++RV +   L+   KVLL DE   +LD   R  + +  ++ 
Sbjct: 123 LVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIREL 182

Query: 197 CEQRGATIVYATH 209
            +Q   T +Y TH
Sbjct: 183 QQQFNITSLYVTH 195

Length = 351

>gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 55/234 (23%), Positives = 97/234 (41%), Gaps = 49/234 (20%)

Query: 20  QFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILA-------GKHMVGGRD 72
             S     K  L  D +L I  G    ++G NG+GK+TLL +++       G+  + G +
Sbjct: 6   NVSKSYGTKVVL-DDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLE 64

Query: 73  VVQ-----------VLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPL-QGDFSAEH 120
           +             +L + +  +++L     + +            G  P  QG  + E 
Sbjct: 65  LTSTPSKELAKKLSILKQENHINSRLTVRDLVGF------------GRFPYSQGRLTKE- 111

Query: 121 MIFGVEGSDPVRRERLIELLDI-DLQWR-MHKVSDGQRRRVQICMGLLHPFKVLLLDEIT 178
                   D       IE L + DL  R + ++S GQR+R  I M L      +LLDE  
Sbjct: 112 --------DRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPL 163

Query: 179 VDLDV---VARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL 229
            +LD+   V  M +L   +   ++ G TIV   H  +    ++ H+  +++G++
Sbjct: 164 NNLDMKHSVQIMKIL---RRLADELGKTIVVVLHDINFASCYSDHIVALKNGKV 214

Length = 252

>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 5/51 (9%)

Query: 14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAG 64
          + +  ++FSY       L   F+L +  G    ++G +G+GK+TLL ++AG
Sbjct: 2  LALDDVRFSYG-----HLPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAG 47

Length = 231

>gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 49/219 (22%), Positives = 92/219 (42%), Gaps = 51/219 (23%)

Query: 11  LNSIKVCGMQFSYEGNDKPPLFY--DFNLGISPGSRCLLVGANGSGKTTLLKIL------ 62
             ++++  ++F+Y+ N     F+    NL I  G    L+G NGSGK+TL  +L      
Sbjct: 320 WKTLELRNVRFAYQDNA----FHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQP 375

Query: 63  -AGKHMVGG-------RDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQG 114
            +G+ ++ G        +  + L  + F D  L            + + +G  G+   Q 
Sbjct: 376 QSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHL------------FDQLLGPEGKASPQL 423

Query: 115 -DFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLL 173
            +   + +    + S  +   R   L          K+S GQ++R+ + + LL    +L+
Sbjct: 424 IEKWLQRLELAHKTS--LNDGRFSNL----------KLSTGQKKRLALLLALLEERDILV 471

Query: 174 LDEITVDLDVVARMDLLDFFKDEC---EQRGATIVYATH 209
           LDE   D D   R    +F++      +++G TI   +H
Sbjct: 472 LDEWAADQDPAFRR---EFYQVLLPLLKEQGKTIFAISH 507

Length = 546

>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

 Score = 41.7 bits (99), Expect = 2e-04
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 7/51 (13%)

Query: 33 YDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMV-------GGRDVVQV 76
             +L +  G    L+G NG+GKTTLLK + G            G D+  +
Sbjct: 20 RGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGL 70

Length = 237

>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 30/137 (21%), Positives = 45/137 (32%), Gaps = 33/137 (24%)

Query: 56  TTLLKILAGKHM-------VGGRDVVQVLNRSSFHDTQLVCSGDLSYLG-GSWSKTVGSA 107
           +TLLK++ G          + G D   + +R             +  +          + 
Sbjct: 1   STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRK-------RIGVVFQDPQLFPELTV 53

Query: 108 GEIPLQGDFSAEHMIFGVEGSDPVRRERLIELL------DIDLQWRMHKVSDGQRRRVQI 161
            E    G    E               R  E L      D   +  +  +S GQ++RV I
Sbjct: 54  RENLFFGLRDKE------------ADARAEEALERVGLPDFLDREPVGTLSGGQKQRVAI 101

Query: 162 CMGLLHPFKVLLLDEIT 178
              LL   K+LLLDE T
Sbjct: 102 ARALLKKPKLLLLDEPT 118

ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119

>gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 8/91 (8%)

Query: 127 GSDPVRRERLIELLDI----DLQWRM----HKVSDGQRRRVQICMGLLHPFKVLLLDEIT 178
           G+   RR+R I+LL+     D   R+    H++S G  +RV I M +    K+L+ DE T
Sbjct: 122 GNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPT 181

Query: 179 VDLDVVARMDLLDFFKDECEQRGATIVYATH 209
             LDV  +  +++   +  ++    +V  TH
Sbjct: 182 TALDVTIQAQIIELLLELQQKENMALVLITH 212

Length = 326

>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 27/83 (32%), Positives = 44/83 (53%)

Query: 147 RMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVY 206
           + H++S GQ++RV +   L+   K+LLLDE    LD   R  +    K   EQ G T V+
Sbjct: 97  KPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVF 156

Query: 207 ATHIFDGLETWATHLAYIQDGEL 229
            TH  +   T +  +A ++ G++
Sbjct: 157 VTHDQEEAMTMSDRIAIMRKGKI 179

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325

>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 26/83 (31%), Positives = 46/83 (55%), Gaps = 5/83 (6%)

Query: 149 HKVSDGQRRRVQICMGLL--HPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVY 206
           H +S GQ++RV I  G+L   P ++++LDE T  LD +    ++    D   + G TI+ 
Sbjct: 136 HHLSGGQKKRVAIA-GILAMKP-EIIVLDEPTSGLDPMGASQIMKLLYD-LNKEGITIII 192

Query: 207 ATHIFDGLETWATHLAYIQDGEL 229
           +TH  D +  +A  +  + DG++
Sbjct: 193 STHDVDLVPVYADKVYVMSDGKI 215

Length = 275

>gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 59/238 (24%), Positives = 100/238 (42%), Gaps = 37/238 (15%)

Query: 9   EKLNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAG--KH 66
           E ++ I   G     +G D      + +  +  GS   LVG  GSGK+TL++      K 
Sbjct: 6   ENVDYIYSPGTPMEKKGLD------NISFELEEGSFVALVGHTGSGKSTLMQHFNALLKP 59

Query: 67  MVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSA---EHMIF 123
             G   +        +H T    + +L  L     K V    + P    F     + + F
Sbjct: 60  SSGTITIA------GYHITPETGNKNLKKL----RKKVSLVFQFPEAQLFENTVLKDVEF 109

Query: 124 GVEG---SDPVRRERLIEL-----LDIDLQWRMHK----VSDGQRRRVQICMGLLHPFKV 171
           G +    S+   +E+ ++      L  DL   + K    +S GQ RRV I   + +  ++
Sbjct: 110 GPKNFGFSEDEAKEKALKWLKKVGLSEDL---ISKSPFELSGGQMRRVAIAGVMAYEPEI 166

Query: 172 LLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL 229
           L LDE    LD   R +++  FKD  ++ G T++  TH  D +  +A  +  ++ G+L
Sbjct: 167 LCLDEPAAGLDPEGRKEMMQLFKDY-QKAGHTVILVTHNMDDVAEYADDVLVLEHGKL 223

Length = 287

>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 133 RERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDF 192
           R RL    D   ++ +H +S GQ++RV I   L+   +VLL DE T  LD      ++  
Sbjct: 128 RLRLKPYAD---RFPLH-LSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSI 183

Query: 193 FKDECEQRGATIVYATHIFDGLETWATHLAYIQDG 227
            + E  + G T V  TH  +     A+ + Y+++G
Sbjct: 184 IR-ELAETGITQVIVTHEVEVARKTASRVVYMENG 217

Length = 242

>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional

 Score = 41.8 bits (99), Expect = 3e-04
 Identities = 54/227 (23%), Positives = 96/227 (42%), Gaps = 41/227 (18%)

Query: 36  NLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRD-----VVQVLNRSSFHDTQ---- 86
           +L +  G    L G NG+GK+TL+K+L+G +  G  +       + L  S+  DT+    
Sbjct: 25  SLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGI 84

Query: 87  ------LVCSGDLS-----YLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRER 135
                 L    +LS     +LG   +      G +    D+ A +          +R ++
Sbjct: 85  AIIHQELALVKELSVLENIFLGNEITP----GGIM----DYDAMY----------LRAQK 126

Query: 136 LIEL--LDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFF 193
           L+    LDI+    +  +  GQ++ V+I   L    ++L+LDE T  L       LLD  
Sbjct: 127 LLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDII 186

Query: 194 KDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDE 240
           +D  +  G   +Y +H  + ++  +  +  I+DG        A + E
Sbjct: 187 RD-LKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMTE 232

Length = 506

>gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 55/196 (28%), Positives = 82/196 (41%), Gaps = 44/196 (22%)

Query: 34  DFNLGISPGSRCLLVGANGSGKTTLLKILAGKH-------MVGGRDVVQVLNRSSFHDTQ 86
           D +L +  G    L+G +G GKTTLL+I+AG           GGRD+           T+
Sbjct: 22  DISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDI-----------TR 70

Query: 87  L-VCSGDLSYLGGSW----SKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRE---RLIE 138
           L     D   +  S+    + TV             A+++ +G++     R E   R+ E
Sbjct: 71  LPPQKRDYGIVFQSYALFPNLTV-------------ADNIAYGLKNRGMGRAEVAERVAE 117

Query: 139 LLD-IDLQWRMHK----VSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFF 193
           LLD + L     K    +S GQ++RV +   L     +LLLDE    LD   R  L    
Sbjct: 118 LLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEI 177

Query: 194 KDECEQRGATIVYATH 209
           +    + G T +  TH
Sbjct: 178 RQLQRRLGVTTIMVTH 193

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353

>gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 46/176 (26%), Positives = 75/176 (42%), Gaps = 28/176 (15%)

Query: 21  FSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKIL-------AGKHMVGG--- 70
           F+Y+   +P L    +  I  G    +VG +G+GK+T+L++L       +G   + G   
Sbjct: 270 FAYDPR-RPILN-GISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDI 327

Query: 71  RDVVQVLNRSSF----HDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVE 126
           RDV Q   R +      DT L       Y    + +   +A E+    + +  H      
Sbjct: 328 RDVTQQSLRRAIGIVPQDTVLFNDTIA-YNIK-YGRPDATAEEVGAAAEAAQIHDFI--- 382

Query: 127 GSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLD 182
                  + L E  D  +  R  K+S G+++RV I   +L    +L+LDE T  LD
Sbjct: 383 -------QSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALD 431

Length = 497

>gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 59/238 (24%), Positives = 101/238 (42%), Gaps = 32/238 (13%)

Query: 34  DFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVV--QVLNRSSFHDTQLVCSG 91
           D +  + PG   +L+G NG+GKTTL+ ++ GK      +V+     + +   + ++  +G
Sbjct: 23  DLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAG 82

Query: 92  DLSYLGGSWSK-------TVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDI-- 142
               +G  + K       TV    E+ L  D S    +F         R R+ ELL    
Sbjct: 83  ----IGRKFQKPTVFENLTVRENLELALNRDKSVFASLFA--RLRAEERRRIDELLATIG 136

Query: 143 --DLQWRMHK-VSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQ 199
             D + R+   +S GQ++ ++I M L    K+LLLDE    +         +  K     
Sbjct: 137 LGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKS--LA 194

Query: 200 RGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAE--LDELRNSTNLLSVVESWL 255
              +I+   H    +   A  +  + +G +     LAE  LDE++N      V+E +L
Sbjct: 195 GKHSILVVEHDMGFVREIADKVTVLHEGSV-----LAEGSLDEVQNDPK---VIEVYL 244

Length = 249

>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional

 Score = 41.0 bits (96), Expect = 4e-04
 Identities = 53/189 (28%), Positives = 91/189 (48%), Gaps = 26/189 (13%)

Query: 34  DFNLGISPGSRCLLVGANGSGKTTLLKILAG-KHMVGGRDVVQVLNRSSFHDTQLVCSGD 92
           D +  +  GS   LVG NGSGK+TL K L G   +  G+  + +L + +    Q +    
Sbjct: 25  DASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGK--ISILGQPT---RQALQKNL 79

Query: 93  LSYLGGS----WSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLD-IDLQWR 147
           ++Y+  S    WS  V    ++ + G +   HM + +  +    R+ +   L  +D+   
Sbjct: 80  VAYVPQSEEVDWSFPV-LVEDVVMMGRYG--HMGW-LRRAKKRDRQIVTAALARVDMVEF 135

Query: 148 MHK----VSDGQRRRVQICMGLLHPFKVLLLDE--ITVDLDVVARM-DLLDFFKDECEQR 200
            H+    +S GQ++RV +   +    +V+LLDE    VD+   AR+  LL   +DE    
Sbjct: 136 RHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDE---- 191

Query: 201 GATIVYATH 209
           G T++ +TH
Sbjct: 192 GKTMLVSTH 200

Length = 272

>gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score = 41.0 bits (96), Expect = 4e-04
 Identities = 45/195 (23%), Positives = 81/195 (41%), Gaps = 49/195 (25%)

Query: 47  LVGANGSGKTTLLKILAGKHMV---GGRDVVQVLNRSSFHDTQLVCSGDLSYLGG----- 98
           ++G NGSGK+TL K+LAG  M+    G  ++         +   +  GD S+        
Sbjct: 44  IIGENGSGKSTLAKMLAG--MIEPTSGEILI---------NDHPLHFGDYSFRSKRIRMI 92

Query: 99  --------SWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIE------LLDIDL 144
                   +    +G   + PL+            +     RR+++ E      LL    
Sbjct: 93  FQDPNTSLNPRLRIGQILDFPLR---------LNTDLEPEQRRKQIFETLRMVGLLPDHA 143

Query: 145 QWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATI 204
            +  H ++ GQ++RV +   L+   K+++ DE    LD+  R  L++   +  E++G + 
Sbjct: 144 NYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISY 203

Query: 205 VYAT-------HIFD 212
           +Y T       HI D
Sbjct: 204 IYVTQHIGMIKHISD 218

Length = 267

>gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional

 Score = 40.9 bits (96), Expect = 4e-04
 Identities = 55/221 (24%), Positives = 87/221 (39%), Gaps = 43/221 (19%)

Query: 34  DFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL 93
             +  +  G    L+G NG+GKTT L++L G                         +G +
Sbjct: 25  GLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD--------------------AGSI 64

Query: 94  SYLGGSWSKTVGSA----GEIP----LQGDFSAEH--MIFG--VEGSDPVRRERLIELLD 141
           S  G         A    G +P    L  DF+     ++FG     S    R  +  LL+
Sbjct: 65  SLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLE 124

Query: 142 I-----DLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDE 196
                     ++ ++S G +RR+ +   L++   VL+LDE T  LD  AR  + +  +  
Sbjct: 125 FAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLR-S 183

Query: 197 CEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAE 237
              RG TI+  TH  +  E     L  I++G      K+AE
Sbjct: 184 LLARGKTILLTTHFMEEAERLCDRLCVIEEG-----RKIAE 219

Length = 306

>gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional

 Score = 41.0 bits (96), Expect = 4e-04
 Identities = 20/38 (52%), Positives = 24/38 (63%)

Query: 34 DFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGR 71
          D +L I PG    L+G NG+GK+TLLK LAG    GG 
Sbjct: 19 DLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGA 56

Length = 272

>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

 Score = 40.7 bits (96), Expect = 5e-04
 Identities = 15/27 (55%), Positives = 18/27 (66%)

Query: 34 DFNLGISPGSRCLLVGANGSGKTTLLK 60
          D NL I  G   +L+G +GSGKTT LK
Sbjct: 19 DVNLTIEEGEFLVLIGPSGSGKTTTLK 45

Length = 309

>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed

 Score = 41.1 bits (97), Expect = 5e-04
 Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 1/44 (2%)

Query: 22  SYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGK 65
           +Y+ + K  L  DF+  +  G +  L+G NG GKTTLLK++ G+
Sbjct: 326 NYQIDGKQ-LVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQ 368

Length = 635

>gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 40.6 bits (95), Expect = 5e-04
 Identities = 48/226 (21%), Positives = 96/226 (42%), Gaps = 33/226 (14%)

Query: 22  SYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKIL-------AGKHMVGGRDVV 74
           SY    K  L  D ++    G+   +VG +G+GK+TL+K++        G  ++ G D+ 
Sbjct: 10  SYSSFGKEIL-KDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIK 68

Query: 75  QVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMI-FG--VEGSDPV 131
            +               D+  L     + +G   + P   + + +  I +G  ++G   V
Sbjct: 69  TI---------------DVIDL----RRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNV 109

Query: 132 RRERLIELLDIDLQWRMHKVSD---GQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMD 188
             E  + ++ ++ ++    V +   G+ +RV I   L +  +VLLLDE T  LD  +   
Sbjct: 110 DVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEI 169

Query: 189 LLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEK 234
           + +       +   T+++ TH  +  +    + A++  G L    K
Sbjct: 170 IEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAK 215

Length = 241

>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional

 Score = 40.1 bits (95), Expect = 5e-04
 Identities = 14/31 (45%), Positives = 22/31 (70%)

Query: 34 DFNLGISPGSRCLLVGANGSGKTTLLKILAG 64
          D +L + PG    ++G NG+GK+TLL+ L+G
Sbjct: 20 DVSLTLRPGEVVAILGPNGAGKSTLLRALSG 50

Length = 258

>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

 Score = 40.7 bits (96), Expect = 6e-04
 Identities = 41/183 (22%), Positives = 74/183 (40%), Gaps = 43/183 (23%)

Query: 47  LVGANGSGKTTLLKILA-------GKH--MVGGRDVVQVLNRSSFHD--TQLVCSGDLS- 94
           ++G NG GK+T LKILA       G++       +V++    +   +   +L   G+L  
Sbjct: 105 ILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLY-EGELRA 163

Query: 95  --------YLGGSWSKTV-GSAGEIPLQGDFSAEHMIFGVEGSDPV-RRERLIELLDID- 143
                    +     K V G  GE+              ++  D   + + ++E L ++ 
Sbjct: 164 VHKPQYVDLI----PKVVKGKVGEL--------------LKKVDERGKFDEVVERLGLEN 205

Query: 144 -LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGA 202
            L   + ++S G+ +RV I   LL    V   DE +  LD+  R++     ++  E    
Sbjct: 206 VLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKY 265

Query: 203 TIV 205
            IV
Sbjct: 266 VIV 268

Length = 591

>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional

 Score = 41.0 bits (96), Expect = 6e-04
 Identities = 54/200 (27%), Positives = 77/200 (38%), Gaps = 55/200 (27%)

Query: 39  ISPGSRCLLVGANGSGKTTLLKILAG---------KHMVGGRDVV-QVLNRSSF------ 82
            SPG    ++G +GSGK+TLL  LAG           +   R    Q+L R+ F      
Sbjct: 91  ASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDI 150

Query: 83  -------HDTQLVCSGDLSYLGGSWS---KTVGSAGEIPLQGDFSAEHMIFG---VEGSD 129
                   +T + CS  L  L  S +   K + +   I   G    E+ I G   + G  
Sbjct: 151 LYPHLTVRETLVFCS--LLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRG-- 206

Query: 130 PVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDL 189
                                +S G+R+RV I   +L    +L+LDE T  LD  A   L
Sbjct: 207 ---------------------ISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRL 245

Query: 190 LDFFKDECEQRGATIVYATH 209
           +        Q+G TIV + H
Sbjct: 246 VLTLGS-LAQKGKTIVTSMH 264

Length = 659

>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 40.0 bits (93), Expect = 6e-04
 Identities = 53/228 (23%), Positives = 94/228 (41%), Gaps = 42/228 (18%)

Query: 26  NDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNR-SSFHD 84
           NDK  +  D  + I   S   ++G +GSGK+TLLK               VLNR    +D
Sbjct: 21  NDKA-ILKDITIKIPNNSIFGIMGPSGSGKSTLLK---------------VLNRLIEIYD 64

Query: 85  TQLVCSGDLSYLGG--------SWSKTVGSAGEIP-------LQGDFSAEHMIFGVEGSD 129
           +++   G + Y G            K VG   + P       +  + +      G++   
Sbjct: 65  SKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKR 124

Query: 130 PVRRERLIELLDIDLQWRMH--------KVSDGQRRRVQICMGLLHPFKVLLLDEITVDL 181
            +++     L  + L   ++        ++S GQ++R+ I   L    KVLL+DE T  +
Sbjct: 125 EIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMI 184

Query: 182 DVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL 229
           D+V    +     +   +    IV  +H    +   A ++A++ +GEL
Sbjct: 185 DIVNSQAIEKLITE--LKNEIAIVIVSHNPQQVARVADYVAFLYNGEL 230

Length = 257

>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter

 Score = 39.9 bits (94), Expect = 7e-04
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 7/50 (14%)

Query: 34 DFNLGISPGSRCLLVGANGSGKTTLLKILA-------GKHMVGGRDVVQV 76
            +L I  G    L+G +G GKTTLL+++A       G+ ++ G+D+  +
Sbjct: 18 GVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNL 67

PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232

>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional

 Score = 40.5 bits (95), Expect = 7e-04
 Identities = 17/28 (60%), Positives = 23/28 (82%)

Query: 37  LGISPGSRCLLVGANGSGKTTLLKILAG 64
           L + PGSR  L+G NG+GK+TL+K+LAG
Sbjct: 333 LNLVPGSRIGLLGRNGAGKSTLIKLLAG 360

Length = 638

>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily

 Score = 39.9 bits (94), Expect = 7e-04
 Identities = 47/183 (25%), Positives = 76/183 (41%), Gaps = 39/183 (21%)

Query: 47  LVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLV--CSGDLSYLGGSWSKTV 104
           ++G++GSGKTTLL  ++G+   GG    Q+L             C    +Y+        
Sbjct: 38  ILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCV---AYV-------- 86

Query: 105 GSAGEIPLQGDFSA------EHMIF------GVEGSDPVRRERLIELLDIDL------QW 146
                   Q D         E + +        + SD +R++R+ ++L  DL        
Sbjct: 87  -------RQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGN 139

Query: 147 RMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVY 206
            +  +S G+RRRV I + LL   KVL+LDE T  LD    ++L+         R   ++ 
Sbjct: 140 LVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLAR-RNRIVIL 198

Query: 207 ATH 209
             H
Sbjct: 199 TIH 201

The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226

>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family

 Score = 40.2 bits (95), Expect = 8e-04
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 152 SDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATH 209
           S GQR+ V +   LL    +LLLDE T  +D  +     D  K     +  T+V  TH
Sbjct: 603 SGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGK--TLVLVTH 658

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694

>gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD

 Score = 39.8 bits (94), Expect = 8e-04
 Identities = 45/164 (27%), Positives = 73/164 (44%), Gaps = 35/164 (21%)

Query: 34  DFNLGISPGS-RCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQL----- 87
           D +L + PG  R + +G NG+GKTT++ ++ GK       V+       F  T L     
Sbjct: 20  DLSLYVDPGELRVI-IGPNGAGKTTMMDVITGKTRPDEGSVL-------FGGTDLTGLPE 71

Query: 88  ---VCSGDLSYLGGSWSK-------TVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLI 137
                +G    +G  + K       TV    E+ L  D S    +F         ++R+ 
Sbjct: 72  HQIARAG----IGRKFQKPTVFENLTVFENLELALPRDKSVFASLFF--RLSAEEKDRIE 125

Query: 138 ELLD-IDLQWRMHKV----SDGQRRRVQICMGLLHPFKVLLLDE 176
           E+L+ I L     ++    S GQ++ ++I M L+   K+LLLDE
Sbjct: 126 EVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDE 169

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242

>gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional

 Score = 39.9 bits (94), Expect = 8e-04
 Identities = 51/192 (26%), Positives = 75/192 (39%), Gaps = 55/192 (28%)

Query: 48  VGANGSGKTTLLKIL-------AGKHMVGGRDVV------QVLNRSSFHDTQLVCSGDLS 94
           VG +G GK+TL ++L        G+    G+D++      Q L R      Q+V      
Sbjct: 47  VGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQ---KIQIVFQNPYG 103

Query: 95  YLGGSWSKTVGSAGEIPLQ--GDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKV- 151
            L     K VG   E PL      SA             RRE+ + +        M KV 
Sbjct: 104 SLNPR--KKVGQILEEPLLINTSLSAAE-----------RREKALAM--------MAKVG 142

Query: 152 -------------SDGQRRRVQICMGL-LHPFKVLLLDEITVDLDVVARMDLLDFFKDEC 197
                        S GQR+R+ I   L L P  V++ DE    LDV  +  +L+   D  
Sbjct: 143 LRPEHYDRYPHMFSGGQRQRIAIARALMLDP-DVVVADEPVSALDVSVQAQVLNLMMDLQ 201

Query: 198 EQRGATIVYATH 209
           ++ G + V+ +H
Sbjct: 202 QELGLSYVFISH 213

Length = 327

>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional

 Score = 40.5 bits (95), Expect = 9e-04
 Identities = 56/206 (27%), Positives = 86/206 (41%), Gaps = 48/206 (23%)

Query: 21  FSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRS 80
           FS++   + P   + NL +  GS   +VG+ G GKT+L+  + G          ++  RS
Sbjct: 622 FSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLG----------ELPPRS 671

Query: 81  SFHDTQLVCSGDLSYLGG-SWSKTVGSAGEIPLQGDFSA---EHMIFGVEGSDPVRRERL 136
              D  +V  G ++Y+   SW               F+A   ++++FG    DP R ER 
Sbjct: 672 ---DASVVIRGTVAYVPQVSWI--------------FNATVRDNILFGSP-FDPERYERA 713

Query: 137 IEL--LDIDLQW-----------RMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDV 183
           I++  L  DL             R   +S GQ++RV +   +     V + D+    LD 
Sbjct: 714 IDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDA 773

Query: 184 -VARMDLLDFFKDECEQRGATIVYAT 208
            V R       KDE   RG T V  T
Sbjct: 774 HVGRQVFDKCIKDEL--RGKTRVLVT 797

Length = 1622

>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein

 Score = 40.3 bits (94), Expect = 9e-04
 Identities = 37/158 (23%), Positives = 67/158 (42%), Gaps = 12/158 (7%)

Query: 33  YDFNLGISPGSRCLLVGANGSGKTTLLKIL-------AGKHMVGGRDVVQVLNRSSFHDT 85
           +D +     G    +VG  G+GKTTL+ +L        G+ ++ G D+  V  R S   +
Sbjct: 352 FDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTV-TRESLRKS 410

Query: 86  QLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQ 145
                 D     G +++++     +  +G    E        +      +     D  + 
Sbjct: 411 IATVFQD----AGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVG 466

Query: 146 WRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDV 183
            R +++S G+R+R+ I   +L    +L+LDE T  LDV
Sbjct: 467 ERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDV 504

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585

>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family

 Score = 40.3 bits (95), Expect = 0.001
 Identities = 16/37 (43%), Positives = 26/37 (70%)

Query: 28 KPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAG 64
          K  +  D +L   PG++  ++G NG+GK+TLL+I+AG
Sbjct: 17 KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAG 53

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552

>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed

 Score = 40.1 bits (95), Expect = 0.001
 Identities = 15/31 (48%), Positives = 24/31 (77%)

Query: 34 DFNLGISPGSRCLLVGANGSGKTTLLKILAG 64
          D +L   PG++  ++G NG+GK+TLL+I+AG
Sbjct: 25 DISLSFFPGAKIGVLGLNGAGKSTLLRIMAG 55

Length = 556

>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional

 Score = 40.0 bits (93), Expect = 0.001
 Identities = 52/214 (24%), Positives = 99/214 (46%), Gaps = 34/214 (15%)

Query: 34  DFNLGISPGSRCLLVGANGSGKTTLLKIL-------AGKHMVGGRDVVQVLNRSSFHDTQ 86
           D +L I  G   +++G +GSGK+T++++L        G+ ++ G D+ ++    S  + +
Sbjct: 46  DASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKI----SDAELR 101

Query: 87  LVCSGDLSYLGGSWS----KTV--GSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELL 140
            V    ++ +  S++     TV   +A  + L G  + E            RRE+ ++ L
Sbjct: 102 EVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEE------------RREKALDAL 149

Query: 141 -DIDLQWRMH----KVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKD 195
             + L+   H    ++S G R+RV +   L     +LL+DE    LD + R ++ D    
Sbjct: 150 RQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVK 209

Query: 196 ECEQRGATIVYATHIFDGLETWATHLAYIQDGEL 229
              +   TIV+ +H  D        +A +Q+GE+
Sbjct: 210 LQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEV 243

Length = 400

>gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component

 Score = 39.0 bits (92), Expect = 0.001
 Identities = 15/31 (48%), Positives = 18/31 (58%)

Query: 34 DFNLGISPGSRCLLVGANGSGKTTLLKILAG 64
            NL I  G    L+G NGSGK+TL K + G
Sbjct: 18 GVNLTIKKGEVHALMGPNGSGKSTLAKTIMG 48

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200

>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional

 Score = 39.2 bits (92), Expect = 0.001
 Identities = 20/61 (32%), Positives = 33/61 (54%)

Query: 149 HKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYAT 208
            ++S GQR+RV +   L+    +LLLDE    LD   R ++L      C++R  T++  +
Sbjct: 128 GQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVS 187

Query: 209 H 209
           H
Sbjct: 188 H 188

Length = 232

>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C

 Score = 39.0 bits (91), Expect = 0.001
 Identities = 48/220 (21%), Positives = 88/220 (40%), Gaps = 23/220 (10%)

Query: 21  FSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKIL-------AGKHMVGGRDV 73
           F+Y       +  D +  + PG    LVG +GSGK+T++ +L        G+ ++ G+ +
Sbjct: 19  FAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPI 78

Query: 74  VQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRR 133
            Q  ++   H    +   +      S    +            S E +    E +     
Sbjct: 79  SQYEHK-YLHSKVSLVGQEPVLFARSLQDNIAYG-----LQSCSFECV---KEAAQKAHA 129

Query: 134 ERLIELL----DIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDL 189
              I  L    D ++  +  ++S GQ++RV I   L+   +VL+LDE T  LD  +   +
Sbjct: 130 HSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQV 189

Query: 190 LDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL 229
                D  E+R  T++   H    +E  A  +  +  G +
Sbjct: 190 QQALYDWPERR--TVLVIAHRLSTVER-ADQILVLDGGRI 226

TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226

>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C

 Score = 38.6 bits (91), Expect = 0.001
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 14 IKVCGMQFSYEGNDK--PPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAG 64
          I V    F+++  ++       D NL +  G    +VG  GSGK++LL  L G
Sbjct: 1  ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLG 53

This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204

>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein

 Score = 39.7 bits (93), Expect = 0.001
 Identities = 39/176 (22%), Positives = 64/176 (36%), Gaps = 50/176 (28%)

Query: 39  ISPGSRCLLVGANGSGKTTLLKILAGK--HMVGGRDVVQVLNRSSFHDTQLVCSGDLSYL 96
           I PG   +++G  GSG +TLLK +A        G + V   +  +  + +    GD+ Y 
Sbjct: 84  IKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYN 143

Query: 97  G------GSWS-----------KTVGSAGEIPLQGDFSAEHM------IFGVE------- 126
                     +           KT  +  +   + ++ A+H+       +G+        
Sbjct: 144 AETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEY-AKHIADVYMATYGLSHTRNTKV 202

Query: 127 GSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLD 182
           G+D VR                  VS G+R+RV I    L   K+   D  T  LD
Sbjct: 203 GNDFVR-----------------GVSGGERKRVSIAEASLGGAKIQCWDNATRGLD 241

[Transport and binding proteins, Other]. Length = 1394

>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional

 Score = 39.6 bits (93), Expect = 0.001
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 21  FSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKIL 62
           F+Y G + P L  + N  I  G    LVG +GSGK+T+  +L
Sbjct: 349 FTYPGKEVPAL-RNINFKIPAGKTVALVGRSGSGKSTIANLL 389

Length = 582

>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters

 Score = 38.3 bits (90), Expect = 0.002
 Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 3/59 (5%)

Query: 152 SDGQRRRVQICMGL-LHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATH 209
           S GQ++RV I   L ++P KV+L DE T  LD     ++LD  KD   + G T+V  TH
Sbjct: 137 SGGQQQRVAIARALAMNP-KVMLFDEPTSALDPELVGEVLDVMKD-LAEEGMTMVVVTH 193

HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213

>gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional

 Score = 38.6 bits (90), Expect = 0.002
 Identities = 17/54 (31%), Positives = 32/54 (59%), Gaps = 3/54 (5%)

Query: 12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGK 65
          N + + G+ F+  GN    +F + +L +  G    ++G +G GKTTLL+++ G+
Sbjct: 6  NLVDMRGVSFT-RGNR--CIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQ 56

Length = 269

>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

 Score = 38.6 bits (91), Expect = 0.002
 Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 14/86 (16%)

Query: 133 RERLIELLD-IDLQWRMHK----VSDGQRRRVQI----CMGLLHPFKVLLLDEITVDLDV 183
           RE+ +ELL+ + L  +       +S GQ++RV I     M    P KV+L DE T  LD 
Sbjct: 114 REKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAM---DP-KVMLFDEPTSALDP 169

Query: 184 VARMDLLDFFKDECEQRGATIVYATH 209
               ++LD  KD  E+ G T++  TH
Sbjct: 170 ELVGEVLDVMKDLAEE-GMTMIIVTH 194

Length = 240

>gnl|CDD|222036 pfam13304, AAA_21, AAA domain

 Score = 38.2 bits (88), Expect = 0.003
 Identities = 11/19 (57%), Positives = 15/19 (78%)

Query: 46 LLVGANGSGKTTLLKILAG 64
          +++G NGSGK+ LLK LA 
Sbjct: 3  VIIGPNGSGKSNLLKALAL 21

Length = 256

>gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

 Score = 38.3 bits (90), Expect = 0.003
 Identities = 14/42 (33%), Positives = 20/42 (47%)

Query: 23 YEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAG 64
           E   K  +    NL +  G    ++G NGSGK+TL   + G
Sbjct: 11 VEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMG 52

Length = 251

>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 38.2 bits (89), Expect = 0.003
 Identities = 18/80 (22%), Positives = 39/80 (48%)

Query: 150 KVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATH 209
           ++S GQ R++ I   L     +++LDE T  LD  ++  ++   K        TI+  +H
Sbjct: 145 QMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSH 204

Query: 210 IFDGLETWATHLAYIQDGEL 229
             + +  +A  +  +++G +
Sbjct: 205 DMNEVARYADEVIVMKEGSI 224

Length = 286

>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional

 Score = 38.3 bits (90), Expect = 0.003
 Identities = 30/117 (25%), Positives = 60/117 (51%), Gaps = 2/117 (1%)

Query: 123 FGVEGSDPVRRERLIELLDID-LQWRM-HKVSDGQRRRVQICMGLLHPFKVLLLDEITVD 180
           +G+  S   + ++++ LL I+ L  R    +S G+++RV I   LL   ++LL+DE    
Sbjct: 99  YGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLAS 158

Query: 181 LDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAE 237
           LD+  + +LL + +    +    I+Y +H  D +   A  +  ++ G+++    L E
Sbjct: 159 LDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEE 215

Length = 352

>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional

 Score = 38.7 bits (90), Expect = 0.003
 Identities = 53/190 (27%), Positives = 85/190 (44%), Gaps = 37/190 (19%)

Query: 41  PGSRCLLVGANGSGKTT----LLKIL---AGKHMVGGRDV-------VQVLNRSSFHDTQ 86
           PG    LVG +GSGK+T    LL+++    G+ +  G+ +       +Q L R    D Q
Sbjct: 349 PGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRR----DIQ 404

Query: 87  LVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLD-IDLQ 145
            +     + L     +TVG +   PL+        + G+         R+  LL+ + L 
Sbjct: 405 FIFQDPYASLDPR--QTVGDSIMEPLR--------VHGLLPGKAAAA-RVAWLLERVGLL 453

Query: 146 ----WRM-HKVSDGQRRRVQICMGL-LHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQ 199
               WR  H+ S GQR+R+ I   L L+P KV++ DE    LDV  R  +++   D    
Sbjct: 454 PEHAWRYPHEFSGGQRQRICIARALALNP-KVIIADEAVSALDVSIRGQIINLLLDLQRD 512

Query: 200 RGATIVYATH 209
            G   ++ +H
Sbjct: 513 FGIAYLFISH 522

Length = 623

>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional

 Score = 38.5 bits (90), Expect = 0.003
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 20  QFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKIL 62
           QF+Y   D P L  + N  + PG    + G  GSGK+TLL ++
Sbjct: 320 QFTYPQTDHPAL-ENVNFTLKPGQMLGICGPTGSGKSTLLSLI 361

Length = 569

>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter

 Score = 38.5 bits (89), Expect = 0.004
 Identities = 56/227 (24%), Positives = 89/227 (39%), Gaps = 43/227 (18%)

Query: 23   YEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSF 82
            Y G   P +     +G+ PG    L+G NG+GKTT  K+L G                  
Sbjct: 1947 YSGTSSPAV-DRLCVGVRPGECFGLLGVNGAGKTTTFKMLTG------------------ 1987

Query: 83   HDTQLVCSGDLSYLGGSWSKTVG----SAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIE 138
             DT  V SGD +  G S    +     + G  P Q D + + ++ G E      R R + 
Sbjct: 1988 -DTT-VTSGDATVAGKSILTNISDVHQNMGYCP-QFD-AIDDLLTGREHLYLYARLRGVP 2043

Query: 139  LLDID--LQWRMHKV-------------SDGQRRRVQICMGLLHPFKVLLLDEITVDLDV 183
              +I+    W +  +             S G +R++   + L+    ++LLDE T  +D 
Sbjct: 2044 AEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDP 2103

Query: 184  VARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELR 230
             AR  L +       + G  +V  +H  +  E   T LA +  G  +
Sbjct: 2104 QARRMLWNTIVSIIRE-GRAVVLTSHSMEECEALCTRLAIMVKGAFQ 2149

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272

>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

 Score = 38.5 bits (90), Expect = 0.004
 Identities = 57/225 (25%), Positives = 97/225 (43%), Gaps = 46/225 (20%)

Query: 34  DFNLGISPGSRCLLVGANGSGKTTLLKILA-------GKHMVGGRDVVQVLNRSSFHDTQ 86
           DF L    G    L+G NG+GK+TL+KI+A       G   +GG    + L  +  H   
Sbjct: 31  DFTL--HAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCAR-LTPAKAHQLG 87

Query: 87  LVCSGDLSYLGGSWSKTVGSAGEIP----LQGDFSA-EHMIFGVEGSDPVRRERLIEL-- 139
           +       YL             +P    L  + S  E+++FG+        +++ +L  
Sbjct: 88  I-------YL-------------VPQEPLLFPNLSVKENILFGLPKR-QASMQKMKQLLA 126

Query: 140 -----LDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFK 194
                LD+D      +V+D  R+ V+I  GL+   ++L+LDE T  L       L    +
Sbjct: 127 ALGCQLDLDSSAGSLEVAD--RQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIR 184

Query: 195 DECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELD 239
            E   +G  IV+ +H    +   A  ++ ++DG +  + K A+L 
Sbjct: 185 -ELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLS 228

Length = 510

>gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated

 Score = 37.7 bits (88), Expect = 0.004
 Identities = 15/29 (51%), Positives = 21/29 (72%)

Query: 36 NLGISPGSRCLLVGANGSGKTTLLKILAG 64
          NL I+ G    ++G NGSGK+TL K++AG
Sbjct: 27 NLSINKGEIHAIMGPNGSGKSTLSKVIAG 55

Length = 252

>gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 37.7 bits (87), Expect = 0.004
 Identities = 58/233 (24%), Positives = 93/233 (39%), Gaps = 36/233 (15%)

Query: 18  GMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVV--- 74
            + F Y+     P+    NL  S      LVGANG GK+TL   L+G        V+   
Sbjct: 6   DLWFRYQ---DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQG 62

Query: 75  QVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQ--------GDFSAEHMIFGVE 126
           + L+ S          G L+       + V +  + P Q         D +      GV 
Sbjct: 63  KPLDYSK--------RGLLAL-----RQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVP 109

Query: 127 GSDPVRR-ERLIELLDID--LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDV 183
            ++  RR +  + L+D        +  +S GQ++RV I   L+   + LLLDE T  LD 
Sbjct: 110 EAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDP 169

Query: 184 VARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLA 236
             R  ++   +    Q G  ++ ++H  D L    +   Y+    LR+ + L 
Sbjct: 170 AGRTQMIAIIRRIVAQ-GNHVIISSHDID-LIYEISDAVYV----LRQGQILT 216

Length = 271

>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional

 Score = 38.3 bits (89), Expect = 0.004
 Identities = 50/198 (25%), Positives = 74/198 (37%), Gaps = 71/198 (35%)

Query: 39  ISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGG 98
           I P    LL+G   SGKTTLL  LAGK                  D  L  SG+++Y G 
Sbjct: 188 IKPSRMTLLLGPPSSGKTTLLLALAGK-----------------LDPSLKVSGEITYNGY 230

Query: 99  SWSKTV---GSA---------GEIPLQG--DFSAEHMIFGVEG---SDPVRRER------ 135
             ++ V    SA         G + ++   DFSA     G      S+  RRE+      
Sbjct: 231 RLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFP 290

Query: 136 ------------------------LIELLDIDL-------QWRMHKVSDGQRRRVQICMG 164
                                    +++L +D+          +  +S GQ++RV     
Sbjct: 291 EAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEM 350

Query: 165 LLHPFKVLLLDEITVDLD 182
           ++ P K L +DEI+  LD
Sbjct: 351 IVGPTKTLFMDEISTGLD 368

Length = 1470

>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

 Score = 38.3 bits (90), Expect = 0.004
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 13  SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILA 63
           S+ +  + F+Y    +P L    +L I  G +  L+G  G GK+TLL++L 
Sbjct: 338 SLTLNNVSFTYPDQPQPVL-KGLSLQIKAGEKVALLGRTGCGKSTLLQLLT 387

Length = 574

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	294
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	100.0
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	100.0
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	100.0
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	100.0
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	100.0
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	100.0
COG1127	263	Ttg2A ABC-type transport system involved in resist	100.0
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	100.0
COG3638	258	ABC-type phosphate/phosphonate transport system, A	100.0
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	100.0
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	100.0
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	100.0
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	100.0
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	100.0
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	100.0
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	100.0
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	100.0
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	100.0
PRK13537	306	nodulation ABC transporter NodI; Provisional	100.0
PRK13536	340	nodulation factor exporter subunit NodI; Provision	100.0
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	100.0
COG0411	250	LivG ABC-type branched-chain amino acid transport	100.0
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	100.0
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	100.0
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	100.0
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	100.0
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	100.0
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	100.0
COG2884	223	FtsE Predicted ATPase involved in cell division [C	100.0
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	100.0
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	100.0
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	100.0
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	100.0
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	100.0
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	100.0
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	100.0
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	100.0
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	100.0
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	100.0
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	100.0
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	100.0
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	100.0
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	100.0
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	100.0
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	100.0
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	100.0
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	100.0
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	100.0
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	100.0
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	100.0
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	100.0
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	100.0
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	100.0
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	100.0
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	100.0
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
COG0410	237	LivF ABC-type branched-chain amino acid transport	100.0
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	100.0
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	100.0
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	100.0
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	100.0
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	100.0
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	100.0
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	100.0
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	100.0
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	100.0
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	100.0
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	100.0
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	100.0
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	100.0
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	100.0
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	100.0
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	100.0
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	100.0
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	100.0
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	100.0
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	100.0
PRK09984	262	phosphonate/organophosphate ester transporter subu	100.0
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	100.0
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	100.0
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	100.0
COG1123	539	ATPase components of various ABC-type transport sy	100.0
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	100.0
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	100.0
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	100.0
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	100.0
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	100.0
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	100.0
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	100.0
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	100.0
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	100.0
cd03269	210	ABC_putative_ATPase This subfamily is involved in	100.0
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	100.0
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	100.0
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	100.0
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	100.0
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	100.0
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	100.0
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	100.0
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	100.0
COG4152	300	ABC-type uncharacterized transport system, ATPase	100.0
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	100.0
COG4598	256	HisP ABC-type histidine transport system, ATPase c	100.0
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	100.0
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	100.0
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	100.0
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	100.0
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	100.0
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	100.0
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	100.0
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	100.0
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	100.0
PRK10908	222	cell division protein FtsE; Provisional	100.0
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	100.0
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	100.0
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	100.0
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	100.0
COG4559	259	ABC-type hemin transport system, ATPase component	100.0
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	100.0
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	100.0
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	100.0
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	100.0
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	100.0
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	100.0
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	100.0
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	100.0
COG1123	539	ATPase components of various ABC-type transport sy	100.0
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	100.0
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	100.0
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	100.0
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	100.0
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	100.0
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	100.0
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	100.0
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	100.0
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	100.0
PRK10938	490	putative molybdenum transport ATP-binding protein	100.0
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	100.0
PRK10261	623	glutathione transporter ATP-binding protein; Provi	100.0
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	100.0
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	100.0
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	100.0
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	100.0
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	100.0
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	100.0
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	100.0
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	100.0
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	100.0
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	100.0
KOG2355	291	consensus Predicted ABC-type transport, ATPase com	100.0
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	100.0
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	100.0
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03299	235	ABC_ModC_like Archeal protein closely related to M	100.0
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	100.0
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	100.0
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	100.0
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	100.0
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	100.0
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	100.0
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	100.0
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	100.0
COG4181	228	Predicted ABC-type transport system involved in ly	100.0
PRK10261	623	glutathione transporter ATP-binding protein; Provi	100.0
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	100.0
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	100.0
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	100.0
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	100.0
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	100.0
COG4586	325	ABC-type uncharacterized transport system, ATPase	100.0
cd03216	163	ABC_Carb_Monos_I This family represents the domain	100.0
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	100.0
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	100.0
COG4987	573	CydC ABC-type transport system involved in cytochr	100.0
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	100.0
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	100.0
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	100.0
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	100.0
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	100.0
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	100.0
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	100.0
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	100.0
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	100.0
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	100.0
KOG0058	716	consensus Peptide exporter, ABC superfamily [Intra	100.0
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	100.0
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	100.0
cd03234	226	ABCG_White The White subfamily represents ABC tran	100.0
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	100.0
COG4988	559	CydD ABC-type transport system involved in cytochr	100.0
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	100.0
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	100.0
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	100.0
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	100.0
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	100.0
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	100.0
PRK03695	248	vitamin B12-transporter ATPase; Provisional	100.0
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	100.0
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	100.0
cd03246	173	ABCC_Protease_Secretion This family represents the	100.0
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	100.0
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	100.0
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	100.0
COG4525	259	TauB ABC-type taurine transport system, ATPase com	100.0
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	100.0
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	100.0
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	100.0
cd03215	182	ABC_Carb_Monos_II This family represents domain II	100.0
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	100.0
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	100.0
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	100.0
PRK15064	530	ABC transporter ATP-binding protein; Provisional	100.0
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	100.0
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	100.0
PRK13546	264	teichoic acids export protein ATP-binding subunit;	100.0
PRK15064	530	ABC transporter ATP-binding protein; Provisional	100.0
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	100.0
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	100.0
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	100.0
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	100.0
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	100.0
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	100.0
COG4619	223	ABC-type uncharacterized transport system, ATPase	100.0
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	100.0
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	100.0
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	100.0
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	100.0
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	100.0
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	100.0
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	100.0
PRK10938	490	putative molybdenum transport ATP-binding protein	100.0
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	100.0
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	100.0
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	100.0
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	100.0
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	100.0
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	100.0
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	100.0
KOG0057	591	consensus Mitochondrial Fe/S cluster exporter, ABC	100.0
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	100.0
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	100.0
PRK11147	635	ABC transporter ATPase component; Reviewed	100.0
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	100.0
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	100.0
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	100.0
COG4172	534	ABC-type uncharacterized transport system, duplica	100.0
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	100.0
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	100.0
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	100.0
COG0488	530	Uup ATPase components of ABC transporters with dup	100.0
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	100.0
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	100.0
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	100.0
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	100.0
COG3845	501	ABC-type uncharacterized transport systems, ATPase	100.0
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	100.0
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	100.0
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	100.0
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	100.0
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	100.0
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	100.0
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	100.0
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	100.0
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	100.0
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	100.0
PRK11147	635	ABC transporter ATPase component; Reviewed	100.0
PRK13409	590	putative ATPase RIL; Provisional	100.0
PLN03073	718	ABC transporter F family; Provisional	100.0
COG4172	534	ABC-type uncharacterized transport system, duplica	100.0
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	100.0
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	100.0
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	100.0
PRK10522	547	multidrug transporter membrane component/ATP-bindi	100.0
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	100.0
PLN03211	659	ABC transporter G-25; Provisional	100.0
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	100.0
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	100.0
COG4674	249	Uncharacterized ABC-type transport system, ATPase	100.0
PLN03232	1495	ABC transporter C family member; Provisional	100.0
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	100.0
PLN03130	1622	ABC transporter C family member; Provisional	100.0
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	100.0
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	100.0
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	100.0
PRK10535	648	macrolide transporter ATP-binding /permease protei	100.0
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	100.0
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	100.0
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	100.0
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	100.0
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	100.0
PTZ00243	1560	ABC transporter; Provisional	100.0
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	100.0
PLN03073	718	ABC transporter F family; Provisional	100.0
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	100.0
COG0488	530	Uup ATPase components of ABC transporters with dup	100.0
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	100.0
PRK13409	590	putative ATPase RIL; Provisional	100.0
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	100.0
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	100.0
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	100.0
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	100.0
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	100.0
KOG0056	790	consensus Heavy metal exporter HMT1, ABC superfami	100.0
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	100.0
PLN03232	1495	ABC transporter C family member; Provisional	100.0
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	100.0
PLN03130	1622	ABC transporter C family member; Provisional	100.0
PLN03140	1470	ABC transporter G family member; Provisional	100.0
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	100.0
COG4133	209	CcmA ABC-type transport system involved in cytochr	100.0
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	100.0
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	100.0
COG5265	497	ATM1 ABC-type transport system involved in Fe-S cl	100.0
COG4136	213	ABC-type uncharacterized transport system, ATPase	100.0
KOG0059	885	consensus Lipid exporter ABCA1 and related protein	100.0
PLN03140	1470	ABC transporter G family member; Provisional	100.0
PTZ00243	1560	ABC transporter; Provisional	100.0
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	100.0
KOG0061	613	consensus Transporter, ABC superfamily (Breast can	100.0
cd03271	261	ABC_UvrA_II The excision repair protein UvrA domai	100.0
KOG0927	614	consensus Predicted transporter (ABC superfamily)	100.0
KOG0054	1381	consensus Multidrug resistance-associated protein/	99.98
KOG0054	1381	consensus Multidrug resistance-associated protein/	99.97
COG4138	248	BtuD ABC-type cobalamin transport system, ATPase c	99.97
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	99.97
KOG0927	614	consensus Predicted transporter (ABC superfamily)	99.97
KOG0062	582	consensus ATPase component of ABC transporters wit	99.97
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	99.97
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.97
PF00005	137	ABC_tran: ABC transporter This structure is on hol	99.97
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	99.97
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	99.96
COG4170	330	SapD ABC-type antimicrobial peptide transport syst	99.96
cd03274	212	ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein	99.96
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	99.96
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	99.95
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	99.95
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.95
KOG0062	582	consensus ATPase component of ABC transporters wit	99.95
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.95
cd03240	204	ABC_Rad50 The catalytic domains of Rad50 are simil	99.95
cd03275	247	ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein	99.95
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	99.95
cd03276	198	ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein	99.95
COG4178	604	ABC-type uncharacterized transport system, permeas	99.95
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	99.93
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.93
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	99.92
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	99.92
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.91
cd03277	213	ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein	99.91
KOG0060	659	consensus Long-chain acyl-CoA transporter, ABC sup	99.9
cd03239	178	ABC_SMC_head The structural maintenance of chromos	99.89
COG2401	593	ABC-type ATPase fused to a predicted acetyltransfe	99.89
cd03285	222	ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS	99.88
cd03227	162	ABC_Class2 ABC-type Class 2 contains systems invol	99.88
cd03241	276	ABC_RecN RecN ATPase involved in DNA repair; ABC (	99.87
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	99.87
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.86
KOG0064	728	consensus Peroxisomal long-chain acyl-CoA transpor	99.86
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	99.84
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	99.84
cd03282	204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	99.84
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	99.82
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	99.82
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	99.82
KOG0063	592	consensus RNAse L inhibitor, ABC superfamily [RNA	99.79
cd03242	270	ABC_RecF RecF is a recombinational DNA repair ATPa	99.77
cd03284	216	ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr	99.77
smart00534	185	MUTSac ATPase domain of DNA mismatch repair MUTS f	99.75
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	99.68
PF02463	220	SMC_N: RecF/RecN/SMC N terminal domain; InterPro:	99.67
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	99.67
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	99.65
cd03287	222	ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS	99.63
PRK00409	782	recombination and DNA strand exchange inhibitor pr	99.62
KOG0063	592	consensus RNAse L inhibitor, ABC superfamily [RNA	99.61
TIGR00618	1042	sbcc exonuclease SbcC. This family is based on the	99.57
cd03286	218	ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS	99.57
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	99.55
PHA02562	562	46 endonuclease subunit; Provisional	99.52
PRK08533	230	flagellar accessory protein FlaH; Reviewed	99.52
PRK10869	553	recombination and repair protein; Provisional	99.5
PRK07721	438	fliI flagellum-specific ATP synthase; Validated	99.5
PRK13695	174	putative NTPase; Provisional	99.49
cd01128	249	rho_factor Transcription termination factor rho is	99.47
PRK03918	880	chromosome segregation protein; Provisional	99.47
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	99.46
PRK01156	895	chromosome segregation protein; Provisional	99.46
PRK10246	1047	exonuclease subunit SbcC; Provisional	99.44
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.43
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	99.4
COG3910	233	Predicted ATPase [General function prediction only	99.4
PRK06793	432	fliI flagellum-specific ATP synthase; Validated	99.37
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	99.35
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	99.34
PRK13830	818	conjugal transfer protein TrbE; Provisional	99.33
PRK00064	361	recF recombination protein F; Reviewed	99.26
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	99.26
PRK02224	880	chromosome segregation protein; Provisional	99.25
PRK06067	234	flagellar accessory protein FlaH; Validated	99.24
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	99.23
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	99.21
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	99.15
TIGR00611	365	recf recF protein. All proteins in this family for	99.07
PRK05399	854	DNA mismatch repair protein MutS; Provisional	99.07
cd01125	239	repA Hexameric Replicative Helicase RepA. RepA is	99.05
TIGR03238	504	dnd_assoc_3 dnd system-associated protein 3. cereu	99.05
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	99.02
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	98.99
smart00382	148	AAA ATPases associated with a variety of cellular	98.96
PRK14079	349	recF recombination protein F; Provisional	98.95
TIGR01026	440	fliI_yscN ATPase FliI/YscN family. This family of	98.95
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	98.9
PF00488	235	MutS_V: MutS domain V C-terminus.; InterPro: IPR00	98.89
PRK13891	852	conjugal transfer protein TrbE; Provisional	98.85
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	98.82
TIGR00152	188	dephospho-CoA kinase. This model produces scores i	98.82
PF13304	303	AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T	98.78
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	98.71
TIGR00416	454	sms DNA repair protein RadA. The gene protuct code	98.68
TIGR03881	229	KaiC_arch_4 KaiC domain protein, PAE1156 family. M	98.68
PRK06002	450	fliI flagellum-specific ATP synthase; Validated	98.68
PF13558	90	SbcCD_C: Putative exonuclease SbcCD, C subunit; PD	98.65
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	98.64
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.62
PF13555	62	AAA_29: P-loop containing region of AAA domain	98.6
TIGR00767	415	rho transcription termination factor Rho. Members	98.6
cd01121	372	Sms Sms (bacterial radA) DNA repair protein. This	98.6
cd01122	271	GP4d_helicase GP4d_helicase is a homohexameric 5'-	98.59
PRK13898	800	type IV secretion system ATPase VirB4; Provisional	98.58
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	98.58
TIGR01070	840	mutS1 DNA mismatch repair protein MutS.	98.56
PF09818	448	ABC_ATPase: Predicted ATPase of the ABC class; Int	98.49
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	98.48
PRK07594	433	type III secretion system ATPase SsaN; Validated	98.47
PRK11823	446	DNA repair protein RadA; Provisional	98.43
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	98.42
PRK13764	602	ATPase; Provisional	98.41
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	98.4
cd01136	326	ATPase_flagellum-secretory_path_III Flagellum-spec	98.4
TIGR03880	224	KaiC_arch_3 KaiC domain protein, AF_0351 family. T	98.39
TIGR02903	615	spore_lon_C ATP-dependent protease, Lon family. Me	98.36
PRK07196	434	fliI flagellum-specific ATP synthase; Validated	98.36
PRK10416	318	signal recognition particle-docking protein FtsY;	98.33
TIGR00235	207	udk uridine kinase. Model contains a number of lon	98.3
PRK09183	259	transposase/IS protein; Provisional	98.29
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	98.28
PRK09825	176	idnK D-gluconate kinase; Provisional	98.27
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	98.27
PRK09862	506	putative ATP-dependent protease; Provisional	98.27
PRK09099	441	type III secretion system ATPase; Provisional	98.24
cd01393	226	recA_like RecA is a bacterial enzyme which has rol	98.24

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=6.9e-58  Score=384.79  Aligned_cols=219  Identities=22%  Similarity=0.292  Sum_probs=185.0

Q ss_pred             ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663           12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG   91 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~   91 (294)
                      ++|+++||+|+|++   ..+|++||++|.+||+++|+||||||||||||||.|+..|+ +|.|.++|.......      
T Consensus         1 ~mi~i~~l~K~fg~---~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~-~G~I~i~g~~~~~~~------   70 (240)
T COG1126           1 MMIEIKNLSKSFGD---KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPD-SGSITVDGEDVGDKK------   70 (240)
T ss_pred             CeEEEEeeeEEeCC---eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCC-CceEEECCEeccchh------
Confidence            37999999999986   67999999999999999999999999999999999999887 999999986542211      


Q ss_pred             CcccccccccccccccCc-ccccccccHHHHh-hcC---CCCcH----HHHHHHHHHcCCC--cccccccCCHHHHHHHH
Q 022663           92 DLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-FGV---EGSDP----VRRERLIELLDID--LQWRMHKVSDGQRRRVQ  160 (294)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~---~~~~~----~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~  160 (294)
                      ++    ...++.++++++ +.+|+.+|+-++. .+.   ....+    +...++++.+++.  .+.+|.+||||||||||
T Consensus        71 ~~----~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVA  146 (240)
T COG1126          71 DI----LKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVA  146 (240)
T ss_pred             hH----HHHHHhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHH
Confidence            11    124556777776 6788888875543 221   22222    2345677888885  68899999999999999


Q ss_pred             HHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHH
Q 022663          161 ICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDE  240 (294)
Q Consensus       161 lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  240 (294)
                      |||||+.+|+++|+|||||+|||+...++++.++++++ .|.|+|+|||++.++.++||||++|++|++++.|++++++.
T Consensus       147 IARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~-eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~  225 (240)
T COG1126         147 IARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAE-EGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFD  225 (240)
T ss_pred             HHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHH-cCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhc
Confidence            99999999999999999999999999999999999986 49999999999999999999999999999999999999998


Q ss_pred             hhhhh
Q 022663          241 LRNST  245 (294)
Q Consensus       241 ~~~~~  245 (294)
                      .+...
T Consensus       226 ~p~~~  230 (240)
T COG1126         226 NPKSE  230 (240)
T ss_pred             CCCCH
Confidence            76543

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=100.00  E-value=2.8e-55  Score=384.50  Aligned_cols=218  Identities=27%  Similarity=0.402  Sum_probs=179.1

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      +|+++||+++|++   +++|+|+||+|++||+++|+||||||||||||+|+|+++|. +|.+.++|.+............
T Consensus         2 ~L~~~~ls~~y~~---~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~-~G~V~l~g~~i~~~~~kelAk~   77 (258)
T COG1120           2 MLEVENLSFGYGG---KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPK-SGEVLLDGKDIASLSPKELAKK   77 (258)
T ss_pred             eeEEEEEEEEECC---eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCC-CCEEEECCCchhhcCHHHHhhh
Confidence            6999999999986   68999999999999999999999999999999999999887 9999999987654322222233


Q ss_pred             cccccccccccccccCcccccccccHHHHh-hcC----------CCCcHHHHHHHHHHcCCC--cccccccCCHHHHHHH
Q 022663           93 LSYLGGSWSKTVGSAGEIPLQGDFSAEHMI-FGV----------EGSDPVRRERLIELLDID--LQWRMHKVSDGQRRRV  159 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----------~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv  159 (294)
                      +.|++|..          .....+++.++. ++.          ...+.+.+.++++.+++.  .++.+.+|||||||||
T Consensus        78 ia~vpQ~~----------~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv  147 (258)
T COG1120          78 LAYVPQSP----------SAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRV  147 (258)
T ss_pred             EEEeccCC----------CCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHH
Confidence            44443321          222233333322 111          112333567788999985  5888999999999999


Q ss_pred             HHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHH
Q 022663          160 QICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELD  239 (294)
Q Consensus       160 ~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  239 (294)
                      .|||||+++|++|||||||++||..++.+++++++++.+++|.|||+|+||++.+.++||++++|++|+++..|+++++.
T Consensus       148 ~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evl  227 (258)
T COG1120         148 LIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL  227 (258)
T ss_pred             HHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhc
Confidence            99999999999999999999999999999999999999888999999999999999999999999999999999999887


Q ss_pred             Hhhhh
Q 022663          240 ELRNS  244 (294)
Q Consensus       240 ~~~~~  244 (294)
                      .....
T Consensus       228 T~e~l  232 (258)
T COG1120         228 TEENL  232 (258)
T ss_pred             CHHHH
Confidence            65443

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=100.00  E-value=3.5e-54  Score=369.71  Aligned_cols=227  Identities=25%  Similarity=0.309  Sum_probs=194.1

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      ||+++||||.|++   +.+++|+||+|++||+++++|||||||||+||+|.+++.|+ +|.|.++|.+.....       
T Consensus         1 MI~~~nvsk~y~~---~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept-~G~I~i~g~~i~~~d-------   69 (309)
T COG1125           1 MIEFENVSKRYGN---KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPT-SGEILIDGEDISDLD-------   69 (309)
T ss_pred             CceeeeeehhcCC---ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCC-CceEEECCeecccCC-------
Confidence            5899999999985   67999999999999999999999999999999999999997 999999998754321       


Q ss_pred             cccccccccccccccCc-ccccccccHHHHhhc---CCCCcH----HHHHHHHHHcCCC----cccccccCCHHHHHHHH
Q 022663           93 LSYLGGSWSKTVGSAGE-IPLQGDFSAEHMIFG---VEGSDP----VRRERLIELLDID----LQWRMHKVSDGQRRRVQ  160 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~----~~~~~~l~~l~l~----~~~~~~~LSgGqkqRv~  160 (294)
                          ...+++.++|+.+ ..+++.++..+++..   +.+|++    ++++++++.++++    .+++|++|||||||||.
T Consensus        70 ----~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVG  145 (309)
T COG1125          70 ----PVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVG  145 (309)
T ss_pred             ----HHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHH
Confidence                1234566777654 678889988766532   234543    3457788889986    47899999999999999


Q ss_pred             HHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHH
Q 022663          161 ICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDE  240 (294)
Q Consensus       161 lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  240 (294)
                      +||||+.+|++||+||||++|||.+|.++.+.+.++.++.|+|||+||||++++.+++|||++|++|+++..++|+++..
T Consensus       146 v~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~  225 (309)
T COG1125         146 VARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILA  225 (309)
T ss_pred             HHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             hhhhhhhHHHHHHHHhhh
Q 022663          241 LRNSTNLLSVVESWLRSE  258 (294)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~  258 (294)
                      .+..    +.+..++...
T Consensus       226 ~Pan----~FV~~f~g~~  239 (309)
T COG1125         226 NPAN----DFVEDFFGES  239 (309)
T ss_pred             CccH----HHHHHHhccc
Confidence            7543    3445555443

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=100.00  E-value=4.2e-52  Score=355.98  Aligned_cols=221  Identities=23%  Similarity=0.328  Sum_probs=177.1

Q ss_pred             ccEEEcceEEEcCCCC-CCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccc-ccc
Q 022663           12 NSIKVCGMQFSYEGND-KPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQ-LVC   89 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~-~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~-~~~   89 (294)
                      ++|+++||++.|++.. ..++|++|||+|.+||++||+|+||||||||.|+|+|+..|+ .|.|.++|........ ...
T Consensus         2 ~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~-~G~I~~~G~~~~~~~~~~~~   80 (252)
T COG1124           2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS-SGSILLDGKPLAPKKRAKAF   80 (252)
T ss_pred             ceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCC-CceEEECCcccCccccchhh
Confidence            4899999999997621 014999999999999999999999999999999999999986 9999999965432110 011


Q ss_pred             cCCcccccccccccccccCcccccccccHHHHhhc-C--CC--CcHHHHHHHHHHcCCC---cccccccCCHHHHHHHHH
Q 022663           90 SGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFG-V--EG--SDPVRRERLIELLDID---LQWRMHKVSDGQRRRVQI  161 (294)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~--~~~~~~~~~l~~l~l~---~~~~~~~LSgGqkqRv~l  161 (294)
                      ...+..++|+.        +..+-+..+....+.. +  .+  ....+..++++.+++.   ++++|++|||||+|||||
T Consensus        81 ~~~VQmVFQDp--------~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaI  152 (252)
T COG1124          81 YRPVQMVFQDP--------YSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAI  152 (252)
T ss_pred             ccceeEEecCC--------ccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHH
Confidence            11222222211        1123334444443321 1  11  1233467889999996   689999999999999999


Q ss_pred             HHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHHh
Q 022663          162 CMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDEL  241 (294)
Q Consensus       162 AraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  241 (294)
                      ||||+.+|++||||||||+||+..+.+++++|.++.++++.|+|+||||+..+..+||||++|++|++++.++.+++...
T Consensus       153 ARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~  232 (252)
T COG1124         153 ARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSH  232 (252)
T ss_pred             HHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998776

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.4e-52  Score=367.82  Aligned_cols=223  Identities=23%  Similarity=0.301  Sum_probs=185.4

Q ss_pred             cEEEcceEEEcCCC--CCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663           13 SIKVCGMQFSYEGN--DKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS   90 (294)
Q Consensus        13 ~l~~~~ls~~y~~~--~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~   90 (294)
                      ||++++|+|.|...  ....+|+||||+|++||++||||.||||||||+|||.++..|+ +|.+.++|.+.......   
T Consensus         1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~Pt-sG~v~v~G~di~~l~~~---   76 (339)
T COG1135           1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPT-SGSVFVDGQDLTALSEA---   76 (339)
T ss_pred             CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCC-CceEEEcCEecccCChH---
Confidence            58999999999752  1246999999999999999999999999999999999999997 99999999765321110   


Q ss_pred             CCcccccccccccccccCc-ccccccccHH-HHhhcCC--CCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHH
Q 022663           91 GDLSYLGGSWSKTVGSAGE-IPLQGDFSAE-HMIFGVE--GSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQ  160 (294)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~--~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~  160 (294)
                       .+    ...++.++++++ +.+....|+. ++.+.+.  +..    ..++.++++.+++.  .+++|.+|||||||||+
T Consensus        77 -~L----r~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVa  151 (339)
T COG1135          77 -EL----RQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVA  151 (339)
T ss_pred             -HH----HHHHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHH
Confidence             00    123456776665 5555555554 4444432  222    24566788888885  68899999999999999


Q ss_pred             HHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHH
Q 022663          161 ICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDE  240 (294)
Q Consensus       161 lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  240 (294)
                      |||||+.+|+|||+|||||+|||.+.+.|+++|+++.++.|.||++|||.|+.+.++||||.+|++|++++.|+..+++.
T Consensus       152 IARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF~  231 (339)
T COG1135         152 IARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFA  231 (339)
T ss_pred             HHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             hhhh
Q 022663          241 LRNS  244 (294)
Q Consensus       241 ~~~~  244 (294)
                      .+..
T Consensus       232 ~Pk~  235 (339)
T COG1135         232 NPKH  235 (339)
T ss_pred             Ccch
Confidence            7653

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.4e-52  Score=364.37  Aligned_cols=216  Identities=21%  Similarity=0.362  Sum_probs=175.5

Q ss_pred             cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663           11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS   90 (294)
Q Consensus        11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~   90 (294)
                      +++|+++|++++|++   .++|+||||+|++|++++|+||||||||||+|+|+|+++|. .|.+.+.|........   .
T Consensus         2 ~~~i~v~nl~v~y~~---~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~-~G~i~~~g~~~~~~~~---~   74 (254)
T COG1121           2 MPMIEVENLTVSYGN---RPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPS-SGEIKIFGKPVRKRRK---R   74 (254)
T ss_pred             CcEEEEeeeEEEECC---EeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCC-cceEEEcccccccccc---C
Confidence            457999999999975   26999999999999999999999999999999999999987 9999988875432111   1


Q ss_pred             CCcccccccccccccccCcccccccccHHHHhh-c----------CCCCcHHHHHHHHHHcCCC--cccccccCCHHHHH
Q 022663           91 GDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIF-G----------VEGSDPVRRERLIELLDID--LQWRMHKVSDGQRR  157 (294)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----------~~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkq  157 (294)
                      ..+.|++|...        +......++.++.. +          ....+++.+.++++.+++.  .++++++|||||+|
T Consensus        75 ~~IgYVPQ~~~--------~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~Q  146 (254)
T COG1121          75 LRIGYVPQKSS--------VDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQ  146 (254)
T ss_pred             CeEEEcCcccc--------cCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHH
Confidence            24555554321        11111234444331 1          1112346678899999986  68999999999999


Q ss_pred             HHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHH
Q 022663          158 RVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAE  237 (294)
Q Consensus       158 Rv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~  237 (294)
                      ||.|||||+++|++|||||||+|+|+.++..++++|.++.++ |+||++||||+..+.++||+|+.|+ ++++..|++++
T Consensus       147 RV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-g~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G~~~~  224 (254)
T COG1121         147 RVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-GKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPEE  224 (254)
T ss_pred             HHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCcHHhHhhCCEEEEEc-CeeEeccChhh
Confidence            999999999999999999999999999999999999999876 9999999999999999999999996 57889999998


Q ss_pred             HHHhhh
Q 022663          238 LDELRN  243 (294)
Q Consensus       238 ~~~~~~  243 (294)
                      +.+..+
T Consensus       225 ~~~~~~  230 (254)
T COG1121         225 VLTEEN  230 (254)
T ss_pred             ccCHHH
Confidence            876543

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=2.1e-51  Score=350.48  Aligned_cols=220  Identities=21%  Similarity=0.235  Sum_probs=181.6

Q ss_pred             cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663           11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS   90 (294)
Q Consensus        11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~   90 (294)
                      .+.|++++|+++|++   +.|++||||+|++||+++|+||||||||||||+|.|++.|+ .|.|.++|.+...-...   
T Consensus         6 ~~~I~vr~v~~~fG~---~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~-~GeI~i~G~~i~~ls~~---   78 (263)
T COG1127           6 EPLIEVRGVTKSFGD---RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD-KGEILIDGEDIPQLSEE---   78 (263)
T ss_pred             cceEEEeeeeeecCC---EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCC-CCeEEEcCcchhccCHH---
Confidence            568999999999986   68999999999999999999999999999999999999997 99999999874321110   


Q ss_pred             CCcccccccccccccccCc-ccccccccHHHH-hhcCC---CCcHHHH----HHHHHHcCCC---cccccccCCHHHHHH
Q 022663           91 GDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHM-IFGVE---GSDPVRR----ERLIELLDID---LQWRMHKVSDGQRRR  158 (294)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~---~~~~~~~----~~~l~~l~l~---~~~~~~~LSgGqkqR  158 (294)
                           .....++.+++++| -.+|..++..++ .+.+.   ...+...    ..-++..|+.   .+.+|++|||||++|
T Consensus        79 -----~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KR  153 (263)
T COG1127          79 -----ELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKR  153 (263)
T ss_pred             -----HHHHHHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHH
Confidence                 00123445666555 456777776544 34322   2222222    2335666774   578999999999999


Q ss_pred             HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663          159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL  238 (294)
Q Consensus       159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~  238 (294)
                      ++||||++.+|++|++||||+||||.+...+.++|+++.++.|.|+|+||||++.+..+|||+++|.+|+|++.|+++++
T Consensus       154 vaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el  233 (263)
T COG1127         154 VALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEEL  233 (263)
T ss_pred             HHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHH
Confidence            99999999999999999999999999999999999999998999999999999999999999999999999999999998


Q ss_pred             HHhh
Q 022663          239 DELR  242 (294)
Q Consensus       239 ~~~~  242 (294)
                      .+..
T Consensus       234 ~~sd  237 (263)
T COG1127         234 LASD  237 (263)
T ss_pred             HhCC
Confidence            7653

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.6e-51  Score=355.08  Aligned_cols=197  Identities=27%  Similarity=0.342  Sum_probs=165.6

Q ss_pred             ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663           12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG   91 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~   91 (294)
                      .+++++++++.|++   ..+|+|+||+|.+||+++|+||||||||||||+|+|+..|+ +|.+.++|..... .    ..
T Consensus         2 ~~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~-~G~V~~~g~~v~~-p----~~   72 (248)
T COG1116           2 ALLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT-SGEVLLDGRPVTG-P----GP   72 (248)
T ss_pred             ceEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEECCcccCC-C----CC
Confidence            37999999999986   57999999999999999999999999999999999999987 8999998876421 1    12


Q ss_pred             CcccccccccccccccCcccccccccHHHH-hhcCCC--C----cHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHH
Q 022663           92 DLSYLGGSWSKTVGSAGEIPLQGDFSAEHM-IFGVEG--S----DPVRRERLIELLDID--LQWRMHKVSDGQRRRVQIC  162 (294)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~----~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lA  162 (294)
                      ++.++.|          +..+++..|+.++ .++...  .    ..+++.++++.+++.  .+++|++|||||||||+||
T Consensus        73 ~~~~vFQ----------~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiA  142 (248)
T COG1116          73 DIGYVFQ----------EDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIA  142 (248)
T ss_pred             CEEEEec----------cCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHH
Confidence            2333322          2445666665444 344322  1    123567788999985  6899999999999999999


Q ss_pred             HHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCC
Q 022663          163 MGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDG  227 (294)
Q Consensus       163 raL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G  227 (294)
                      |||+.+|++|||||||++||..++..+.+.+.++.++.++||++||||++++-.++|||++|.++
T Consensus       143 RAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~  207 (248)
T COG1116         143 RALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR  207 (248)
T ss_pred             HHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence            99999999999999999999999999999999999999999999999999999999999999994

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.5e-51  Score=350.56  Aligned_cols=218  Identities=23%  Similarity=0.293  Sum_probs=177.9

Q ss_pred             ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663           12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG   91 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~   91 (294)
                      .+|+++||++.|++  ++.+|+||||+|++||+++||||||||||||||+|+|+..++ .|.+.++|.+.......    
T Consensus         2 ~~i~~~nl~k~yp~--~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t-~G~i~~~g~~i~~~~~k----   74 (258)
T COG3638           2 MMIEVKNLSKTYPG--GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPT-SGEILFNGVQITKLKGK----   74 (258)
T ss_pred             ceEEEeeeeeecCC--CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCC-cceEEecccchhccchH----
Confidence            37999999999964  368999999999999999999999999999999999988886 88999888654322110    


Q ss_pred             CcccccccccccccccCc-ccccccccHH-HHhhc-------------CC-CCcHHHHHHHHHHcCCC--cccccccCCH
Q 022663           92 DLSYLGGSWSKTVGSAGE-IPLQGDFSAE-HMIFG-------------VE-GSDPVRRERLIELLDID--LQWRMHKVSD  153 (294)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~-------------~~-~~~~~~~~~~l~~l~l~--~~~~~~~LSg  153 (294)
                          .-..++..++++++ +.+.+++++. +++.+             +. ..++..+-++++.+++.  ..++..+|||
T Consensus        75 ----~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSG  150 (258)
T COG3638          75 ----ELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSG  150 (258)
T ss_pred             ----HHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCc
Confidence                01124455666654 4555555543 32221             11 11223345677888884  5678999999


Q ss_pred             HHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecc
Q 022663          154 GQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAE  233 (294)
Q Consensus       154 GqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g  233 (294)
                      ||||||+|||||+++|++||.|||+++|||.+.+.+++.|++++++.|.|||+..|+++.+.+|||||+-|++|+|+++|
T Consensus       151 GQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg  230 (258)
T COG3638         151 GQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDG  230 (258)
T ss_pred             chhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHH
Q 022663          234 KLAELDE  240 (294)
Q Consensus       234 ~~~~~~~  240 (294)
                      ++.++.+
T Consensus       231 ~~~el~~  237 (258)
T COG3638         231 PASELTD  237 (258)
T ss_pred             ChhhhhH
Confidence            9988643

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=100.00  E-value=1.9e-51  Score=375.03  Aligned_cols=217  Identities=25%  Similarity=0.343  Sum_probs=188.9

Q ss_pred             cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663           11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS   90 (294)
Q Consensus        11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~   90 (294)
                      ++.|+++||+++|++   ..+++|+||+|++||+++|+||||||||||||+|+|+..|+ +|.|.++|++...-.     
T Consensus         3 ~~~l~i~~v~k~yg~---~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~-~G~I~l~G~~i~~lp-----   73 (352)
T COG3842           3 KPALEIRNVSKSFGD---FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS-SGEILLDGEDITDVP-----   73 (352)
T ss_pred             CceEEEEeeeeecCC---eeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEECCEECCCCC-----
Confidence            357999999999985   68999999999999999999999999999999999999997 999999998754311     


Q ss_pred             CCcccccccccccccccCc-ccccccccHHH-HhhcCCC---Cc----HHHHHHHHHHcCCC--cccccccCCHHHHHHH
Q 022663           91 GDLSYLGGSWSKTVGSAGE-IPLQGDFSAEH-MIFGVEG---SD----PVRRERLIELLDID--LQWRMHKVSDGQRRRV  159 (294)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~---~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv  159 (294)
                              ..++.++++++ +.+|+.+++.+ +.|++..   ..    .+++.++++.+++.  .+++|++|||||||||
T Consensus        74 --------p~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRV  145 (352)
T COG3842          74 --------PEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRV  145 (352)
T ss_pred             --------hhhcccceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHH
Confidence                    12445666665 67889998754 5577651   11    23567788888886  5899999999999999


Q ss_pred             HHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHH
Q 022663          160 QICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELD  239 (294)
Q Consensus       160 ~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  239 (294)
                      +|||||+.+|++||||||.++||...|.++...++++.++.|.|.|+||||.+++..++|||++|++|+|...|+++++.
T Consensus       146 ALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY  225 (352)
T COG3842         146 ALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIY  225 (352)
T ss_pred             HHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             Hhhhh
Q 022663          240 ELRNS  244 (294)
Q Consensus       240 ~~~~~  244 (294)
                      ..+..
T Consensus       226 ~~P~~  230 (352)
T COG3842         226 ERPAT  230 (352)
T ss_pred             hCcch
Confidence            76543

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=100.00  E-value=5.4e-51  Score=339.05  Aligned_cols=222  Identities=25%  Similarity=0.365  Sum_probs=184.3

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      ||++.+++++|+.  ...+++||||++++||++||+|||||||||+||+|++++.|+ +|.+.++|-+...++.      
T Consensus         1 Ml~v~~l~K~y~~--~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~-~G~v~idg~d~~~~p~------   71 (245)
T COG4555           1 MLEVTDLTKSYGS--KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD-SGKVTIDGVDTVRDPS------   71 (245)
T ss_pred             CeeeeehhhhccC--HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCC-CceEEEeecccccChH------
Confidence            5899999999976  234899999999999999999999999999999999999997 9999999876543221      


Q ss_pred             cccccccccccccccC-cccccccccHHHHhh------cCCCC-cHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHH
Q 022663           93 LSYLGGSWSKTVGSAG-EIPLQGDFSAEHMIF------GVEGS-DPVRRERLIELLDID--LQWRMHKVSDGQRRRVQIC  162 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~------~~~~~-~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lA  162 (294)
                            ..++.++..+ +..++..+|+++++.      ++... -+.+.+++.+.|++.  .++++.+||.||||||+||
T Consensus        72 ------~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iA  145 (245)
T COG4555          72 ------FVRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIA  145 (245)
T ss_pred             ------HHhhhcceecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHH
Confidence                  1233344333 466788888776542      22221 234567888899985  7999999999999999999


Q ss_pred             HHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHHhh
Q 022663          163 MGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDELR  242 (294)
Q Consensus       163 raL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~  242 (294)
                      |||+++|++|+|||||+|||..++..+.+++..+. +.|++||++||++++++.+||+|++|++|+++..|+++++....
T Consensus       146 RAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k-~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r~  224 (245)
T COG4555         146 RALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLK-NEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDART  224 (245)
T ss_pred             HHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhh-cCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHHH
Confidence            99999999999999999999999999999998875 45999999999999999999999999999999999999987765


Q ss_pred             hhhhhHHH
Q 022663          243 NSTNLLSV  250 (294)
Q Consensus       243 ~~~~~~~~  250 (294)
                      ...++.+.
T Consensus       225 ~~~~le~~  232 (245)
T COG4555         225 VLRNLEEI  232 (245)
T ss_pred             hhcCHHHH
Confidence            55544433

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=100.00  E-value=2.4e-50  Score=365.92  Aligned_cols=215  Identities=25%  Similarity=0.333  Sum_probs=185.8

Q ss_pred             ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663           12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG   91 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~   91 (294)
                      .+|+++||+|.|++   ..+++++||+|++||+++|+||||||||||||+|+|+..|+ +|.|.++|.+...-.      
T Consensus         2 ~~i~l~~v~K~yg~---~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~-~G~I~i~g~~vt~l~------   71 (338)
T COG3839           2 AELELKNVRKSFGS---FEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPT-SGEILIDGRDVTDLP------   71 (338)
T ss_pred             cEEEEeeeEEEcCC---ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEECCEECCCCC------
Confidence            47999999999975   22899999999999999999999999999999999999987 999999998653211      


Q ss_pred             CcccccccccccccccCc-ccccccccHHH-HhhcCCCC------cHHHHHHHHHHcCCC--cccccccCCHHHHHHHHH
Q 022663           92 DLSYLGGSWSKTVGSAGE-IPLQGDFSAEH-MIFGVEGS------DPVRRERLIELLDID--LQWRMHKVSDGQRRRVQI  161 (294)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~------~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~l  161 (294)
                             ...+.+++++| +.+++.+++.+ +.|+++..      -.+++.++.+.|++.  ++++|.+|||||||||||
T Consensus        72 -------P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAl  144 (338)
T COG3839          72 -------PEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVAL  144 (338)
T ss_pred             -------hhHCCEEEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHH
Confidence                   12345566655 56888888654 45655421      134567888999986  799999999999999999


Q ss_pred             HHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHHh
Q 022663          162 CMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDEL  241 (294)
Q Consensus       162 AraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  241 (294)
                      ||||+.+|+++|||||+|+||...+..+...|+++.++.|.|+|+||||..++..++|||++|++|+|...|++.++.+.
T Consensus       145 aRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~  224 (338)
T COG3839         145 ARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYER  224 (338)
T ss_pred             HHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhC
Confidence            99999999999999999999999999999999999888899999999999999999999999999999999999999876


Q ss_pred             hh
Q 022663          242 RN  243 (294)
Q Consensus       242 ~~  243 (294)
                      +.
T Consensus       225 P~  226 (338)
T COG3839         225 PA  226 (338)
T ss_pred             cc
Confidence            54

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.5e-50  Score=355.64  Aligned_cols=219  Identities=26%  Similarity=0.371  Sum_probs=185.7

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      +|.++++++.|+.   ..+++|||++|+.||+++|+||||||||||||+|+|+..|+ .|.|.++|...+....      
T Consensus         2 ~i~i~~~~~~~~~---~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~-~G~I~~~~~~l~D~~~------   71 (345)
T COG1118           2 SIRINNVKKRFGA---FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD-AGRIRLNGRVLFDVSN------   71 (345)
T ss_pred             ceeehhhhhhccc---ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCC-CceEEECCEeccchhc------
Confidence            6999999999986   67999999999999999999999999999999999999997 9999998884332111      


Q ss_pred             cccccccccccccccCc-ccccccccH-HHHhhcCCC--------CcHHHHHHHHHHcCCC--cccccccCCHHHHHHHH
Q 022663           93 LSYLGGSWSKTVGSAGE-IPLQGDFSA-EHMIFGVEG--------SDPVRRERLIELLDID--LQWRMHKVSDGQRRRVQ  160 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~--------~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~  160 (294)
                      .    ....+.++++++ +.+++.+++ +|+.|+++-        ..+.++.++++.+.+.  .+++|.+||||||||||
T Consensus        72 ~----~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVA  147 (345)
T COG1118          72 L----AVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVA  147 (345)
T ss_pred             c----chhhcceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHH
Confidence            0    012335666665 557778875 455677531        1234566778888875  58999999999999999


Q ss_pred             HHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHH
Q 022663          161 ICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDE  240 (294)
Q Consensus       161 lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  240 (294)
                      |||||+.+|++||||||+++||...+.++..+|.++..+.|.|+++||||.+++.++||||++|++|+|...|+++++..
T Consensus       148 LARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~  227 (345)
T COG1118         148 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYD  227 (345)
T ss_pred             HHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhc
Confidence            99999999999999999999999999999999999988889999999999999999999999999999999999999988


Q ss_pred             hhhhh
Q 022663          241 LRNST  245 (294)
Q Consensus       241 ~~~~~  245 (294)
                      .+++.
T Consensus       228 ~P~s~  232 (345)
T COG1118         228 HPASR  232 (345)
T ss_pred             CCCcc
Confidence            76653

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=100.00  E-value=9.1e-50  Score=343.41  Aligned_cols=209  Identities=26%  Similarity=0.369  Sum_probs=168.2

Q ss_pred             cEEEcceEEEcCCCC-CCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663           13 SIKVCGMQFSYEGND-KPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG   91 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~-~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~   91 (294)
                      +++++||++.|.... ...+|+++||+|++||+++|+|||||||||||++|.|+..|+ +|.+.++|.+.......    
T Consensus         1 ~i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt-~G~v~i~g~d~~~l~~~----   75 (226)
T COG1136           1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPT-SGEVLINGKDLTKLSEK----   75 (226)
T ss_pred             CcEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC-CceEEECCEEcCcCCHH----
Confidence            478999999996421 246999999999999999999999999999999999999995 99999988654321100    


Q ss_pred             CcccccccccccccccCc-ccccccccHHHHhh-c--CCCC----cHHHHHHHHHHcCCC--c-ccccccCCHHHHHHHH
Q 022663           92 DLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMIF-G--VEGS----DPVRRERLIELLDID--L-QWRMHKVSDGQRRRVQ  160 (294)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~--~~~~----~~~~~~~~l~~l~l~--~-~~~~~~LSgGqkqRv~  160 (294)
                         ......+..+++++| +.+.+.+++.+++. .  +...    ...+...+++.+++.  . +++|.+||||||||||
T Consensus        76 ---~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVA  152 (226)
T COG1136          76 ---ELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVA  152 (226)
T ss_pred             ---HHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHH
Confidence               001123445677766 56778888766542 1  1111    234456788888885  3 4789999999999999


Q ss_pred             HHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEE
Q 022663          161 ICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELR  230 (294)
Q Consensus       161 lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~  230 (294)
                      |||||+.+|++||+||||.+||..+.+.++++|.++.++.|+|||+||||.+.+. +|||++.|.+|++.
T Consensus       153 IARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~-~~dr~i~l~dG~~~  221 (226)
T COG1136         153 IARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAK-YADRVIELKDGKIE  221 (226)
T ss_pred             HHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH-hCCEEEEEeCCeee
Confidence            9999999999999999999999999999999999999888999999999998766 89999999999953

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.1e-49  Score=348.17  Aligned_cols=217  Identities=30%  Similarity=0.398  Sum_probs=181.0

Q ss_pred             ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663           12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG   91 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~   91 (294)
                      +++++++++++|++.  ..+|+++||+|++||+++|+|+||||||||+++++|++.|. +|.+.++|.+.....      
T Consensus         2 ~~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~-~G~v~~~g~~~~~~~------   72 (235)
T COG1122           2 RMIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPT-SGEVLVDGLDTSSEK------   72 (235)
T ss_pred             ceEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCC-CCEEEECCeeccchh------
Confidence            479999999999762  57999999999999999999999999999999999999987 788888886543100      


Q ss_pred             CcccccccccccccccCcc---cccccccHHHHhhcCCC--Cc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHH
Q 022663           92 DLSYLGGSWSKTVGSAGEI---PLQGDFSAEHMIFGVEG--SD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQ  160 (294)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~--~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~  160 (294)
                      .    ....++.++++++.   +++.....+++.|+..+  ..    ..++.++++.+++.  .++.+.+|||||||||+
T Consensus        73 ~----~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRva  148 (235)
T COG1122          73 S----LLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVA  148 (235)
T ss_pred             h----HHHhhcceEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHH
Confidence            0    01123345555442   35555566777776543  12    23456788888885  68899999999999999


Q ss_pred             HHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHH
Q 022663          161 ICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDE  240 (294)
Q Consensus       161 lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  240 (294)
                      ||.+|+.+|++|||||||++||+.++.++++++.++.++.|+|||++|||++++..+|||+++|++|+++.+|++.++++
T Consensus       149 IA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~  228 (235)
T COG1122         149 IAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFN  228 (235)
T ss_pred             hhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhh
Confidence            99999999999999999999999999999999999987768999999999999999999999999999999999988876


Q ss_pred             h
Q 022663          241 L  241 (294)
Q Consensus       241 ~  241 (294)
                      .
T Consensus       229 ~  229 (235)
T COG1122         229 D  229 (235)
T ss_pred             h
Confidence            4

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=100.00  E-value=1.5e-49  Score=359.88  Aligned_cols=215  Identities=27%  Similarity=0.428  Sum_probs=181.4

Q ss_pred             ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663           12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG   91 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~   91 (294)
                      ..++++||+++|++  ++.+|+||||+|++|+++||+||||||||||+|+|+|++.|+ +|.+.++|.+.....      
T Consensus         3 ~~i~~~~l~k~~~~--~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~-~G~i~i~G~~~~~~~------   73 (293)
T COG1131           3 EVIEVRNLTKKYGG--DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPT-SGEILVLGYDVVKEP------   73 (293)
T ss_pred             ceeeecceEEEeCC--CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC-ceEEEEcCEeCccCH------
Confidence            36899999999982  157999999999999999999999999999999999999986 999999997654310      


Q ss_pred             CcccccccccccccccCc-ccccccccHHHHhhc---CCC----CcHHHHHHHHHHcCCCc--ccccccCCHHHHHHHHH
Q 022663           92 DLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMIFG---VEG----SDPVRRERLIELLDIDL--QWRMHKVSDGQRRRVQI  161 (294)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~----~~~~~~~~~l~~l~l~~--~~~~~~LSgGqkqRv~l  161 (294)
                            ...+..++++++ ..+++.+|+.+++..   ...    ...++++++++.+++..  ++++.+||+|||||++|
T Consensus        74 ------~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~i  147 (293)
T COG1131          74 ------AKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSI  147 (293)
T ss_pred             ------HHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHH
Confidence                  122334555555 446778887765421   111    22456788999999974  67899999999999999


Q ss_pred             HHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHHh
Q 022663          162 CMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDEL  241 (294)
Q Consensus       162 AraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  241 (294)
                      |+||+.+|++|||||||+||||.++.+++++|++++++.+.|||++||.+++++.+||+|++|++|+++..|+++++...
T Consensus       148 a~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~  227 (293)
T COG1131         148 ALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK  227 (293)
T ss_pred             HHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence            99999999999999999999999999999999999876448999999999999999999999999999999999887654

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=100.00  E-value=1.4e-48  Score=360.05  Aligned_cols=221  Identities=22%  Similarity=0.272  Sum_probs=175.3

Q ss_pred             cEEEcceEEEcCCCC-CCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663           13 SIKVCGMQFSYEGND-KPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG   91 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~-~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~   91 (294)
                      ||+++||+++|++.+ ..++|+||||+|++||+++|+||||||||||+|+|+|++.|+ +|.+.++|.+.......    
T Consensus         1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~-~G~I~i~G~~i~~~~~~----   75 (343)
T TIGR02314         1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT-SGSVIVDGQDLTTLSNS----   75 (343)
T ss_pred             CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC-ceEEEECCEECCcCCHH----
Confidence            589999999996311 246999999999999999999999999999999999999887 89999988754221000    


Q ss_pred             CcccccccccccccccCc-ccccccccHHH-HhhcC--CCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHH
Q 022663           92 DLSYLGGSWSKTVGSAGE-IPLQGDFSAEH-MIFGV--EGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQI  161 (294)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~l  161 (294)
                      ..    ...+..++++++ ..+++..+..+ +.+..  ....    .+++.++++.+++.  .++++.+|||||||||+|
T Consensus        76 ~l----~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~I  151 (343)
T TIGR02314        76 EL----TKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAI  151 (343)
T ss_pred             HH----HHHhcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHH
Confidence            00    001223444443 23444445433 33322  1111    23456788888885  588999999999999999


Q ss_pred             HHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHHh
Q 022663          162 CMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDEL  241 (294)
Q Consensus       162 AraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  241 (294)
                      ||||+.+|++|||||||++||+.++..++++|+++.++.|.|||+||||++.+.++||+|++|++|++++.|++++++..
T Consensus       152 ARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~~  231 (343)
T TIGR02314       152 ARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSH  231 (343)
T ss_pred             HHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHcC
Confidence            99999999999999999999999999999999999876799999999999999999999999999999999999998764


Q ss_pred             h
Q 022663          242 R  242 (294)
Q Consensus       242 ~  242 (294)
                      +
T Consensus       232 p  232 (343)
T TIGR02314       232 P  232 (343)
T ss_pred             C
Confidence            3

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.4e-48  Score=360.79  Aligned_cols=214  Identities=21%  Similarity=0.295  Sum_probs=177.3

Q ss_pred             ccEEEcceEEEc-CCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663           12 NSIKVCGMQFSY-EGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS   90 (294)
Q Consensus        12 ~~l~~~~ls~~y-~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~   90 (294)
                      .+|+++||+++| ++   +.+|+|+||+|++||+++|+||||||||||||+|+|+..|+ +|.+.++|.+.....     
T Consensus         2 ~~l~i~~l~~~~~~~---~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~-~G~I~~~g~~i~~~~-----   72 (356)
T PRK11650          2 AGLKLQAVRKSYDGK---TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERIT-SGEIWIGGRVVNELE-----   72 (356)
T ss_pred             CEEEEEeEEEEeCCC---CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC-ceEEEECCEECCCCC-----
Confidence            369999999999 54   57999999999999999999999999999999999998886 899999887542210     


Q ss_pred             CCcccccccccccccccCc-ccccccccHHHH-hhcCC--CCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHH
Q 022663           91 GDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHM-IFGVE--GSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQ  160 (294)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~--~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~  160 (294)
                              ...+.++++++ ..+++.++..++ .++..  ...    ..++.++++.+++.  .++++.+|||||||||+
T Consensus        73 --------~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRva  144 (356)
T PRK11650         73 --------PADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVA  144 (356)
T ss_pred             --------HHHCCEEEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHH
Confidence                    01123444444 345566665443 34322  111    23456788888885  58899999999999999


Q ss_pred             HHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHH
Q 022663          161 ICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDE  240 (294)
Q Consensus       161 lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  240 (294)
                      |||||+.+|++|||||||++||+..+..+.+.|+++.++.|.|+|+||||++++..+||+|++|++|+++..|+++++.+
T Consensus       145 lARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~  224 (356)
T PRK11650        145 MGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYE  224 (356)
T ss_pred             HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHh
Confidence            99999999999999999999999999999999999887779999999999999999999999999999999999999876


Q ss_pred             hh
Q 022663          241 LR  242 (294)
Q Consensus       241 ~~  242 (294)
                      .+
T Consensus       225 ~p  226 (356)
T PRK11650        225 KP  226 (356)
T ss_pred             CC
Confidence            54

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=100.00  E-value=1.7e-48  Score=355.67  Aligned_cols=213  Identities=23%  Similarity=0.327  Sum_probs=174.1

Q ss_pred             ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663           12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG   91 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~   91 (294)
                      ++|+++||+++|++   ..+|+||||+|++||++||+||||||||||+|+|+|++.|+ +|.+.++|.+......     
T Consensus         6 ~~i~i~~l~k~~~~---~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~-~G~v~i~G~~~~~~~~-----   76 (306)
T PRK13537          6 APIDFRNVEKRYGD---KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD-AGSISLCGEPVPSRAR-----   76 (306)
T ss_pred             ceEEEEeEEEEECC---eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC-ceEEEECCEecccchH-----
Confidence            47999999999975   57999999999999999999999999999999999999887 8999998876432110     


Q ss_pred             CcccccccccccccccCc-ccccccccHHHHhh--c-CCCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHH
Q 022663           92 DLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMIF--G-VEGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQI  161 (294)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~-~~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~l  161 (294)
                             ..+..++++++ ..++..++..+++.  . .....    ..+..++++.+++.  .++++++||||||||++|
T Consensus        77 -------~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~l  149 (306)
T PRK13537         77 -------HARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTL  149 (306)
T ss_pred             -------HHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHH
Confidence                   11223444443 33445556554432  1 11111    23456778888885  578899999999999999


Q ss_pred             HHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHHh
Q 022663          162 CMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDEL  241 (294)
Q Consensus       162 AraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  241 (294)
                      |+||+++|++|||||||+|||+.++..++++|.++.+ .|+|||++||+++++.++||||++|++|+++..|+++++...
T Consensus       150 a~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~  228 (306)
T PRK13537        150 ARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLA-RGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES  228 (306)
T ss_pred             HHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence            9999999999999999999999999999999999864 589999999999999999999999999999999999988654

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=100.00  E-value=2.5e-48  Score=358.67  Aligned_cols=214  Identities=22%  Similarity=0.336  Sum_probs=174.2

Q ss_pred             cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663           11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS   90 (294)
Q Consensus        11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~   90 (294)
                      +++|+++||+++|++   +.+|+|+||+|++||++||+||||||||||+|+|+|++.|+ +|.+.++|.+......    
T Consensus        39 ~~~i~i~nl~k~y~~---~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~-~G~i~i~G~~~~~~~~----  110 (340)
T PRK13536         39 TVAIDLAGVSKSYGD---KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD-AGKITVLGVPVPARAR----  110 (340)
T ss_pred             ceeEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC-ceEEEECCEECCcchH----
Confidence            457999999999975   57999999999999999999999999999999999999887 8999999876432110    


Q ss_pred             CCcccccccccccccccCc-ccccccccHHHHh-h-c-CCCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHH
Q 022663           91 GDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-F-G-VEGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQ  160 (294)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~-~-~~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~  160 (294)
                              ..+..++++++ ..++..++..+++ + . .....    ..+..++++.+++.  .++++.+|||||||||+
T Consensus       111 --------~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~  182 (340)
T PRK13536        111 --------LARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLT  182 (340)
T ss_pred             --------HHhccEEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHH
Confidence                    11223344433 2344455554433 1 1 11111    22345678888886  57889999999999999


Q ss_pred             HHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHH
Q 022663          161 ICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDE  240 (294)
Q Consensus       161 lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  240 (294)
                      ||+||+++|++|||||||+|||+.++..++++|.++.+ .|.|||++||+++++.++||+|++|++|+++..|+++++..
T Consensus       183 lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~-~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~  261 (340)
T PRK13536        183 LARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-RGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALID  261 (340)
T ss_pred             HHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            99999999999999999999999999999999999865 59999999999999999999999999999999999999865


Q ss_pred             h
Q 022663          241 L  241 (294)
Q Consensus       241 ~  241 (294)
                      .
T Consensus       262 ~  262 (340)
T PRK13536        262 E  262 (340)
T ss_pred             h
Confidence            4

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=100.00  E-value=3.9e-48  Score=359.07  Aligned_cols=216  Identities=21%  Similarity=0.268  Sum_probs=179.5

Q ss_pred             cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663           11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS   90 (294)
Q Consensus        11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~   90 (294)
                      +++|+++||+++|++   ..+|+|+||+|++||+++|+||||||||||||+|+|+..|+ +|.+.++|.+.....     
T Consensus         2 ~~~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~-~G~I~i~g~~~~~~~-----   72 (353)
T TIGR03265         2 SPYLSIDNIRKRFGA---FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQT-AGTIYQGGRDITRLP-----   72 (353)
T ss_pred             CcEEEEEEEEEEeCC---eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC-ceEEEECCEECCCCC-----
Confidence            357999999999975   56899999999999999999999999999999999998887 899999887542110     


Q ss_pred             CCcccccccccccccccCc-ccccccccHHHH-hhcCC--CCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHH
Q 022663           91 GDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHM-IFGVE--GSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQ  160 (294)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~--~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~  160 (294)
                              ...+.++++++ ..+++.++..++ .++..  ..+    ..+++++++.+++.  .++++.+|||||||||+
T Consensus        73 --------~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRva  144 (353)
T TIGR03265        73 --------PQKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVA  144 (353)
T ss_pred             --------HHHCCEEEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHH
Confidence                    01223444444 345666665443 34322  111    23567888999986  58899999999999999


Q ss_pred             HHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHH
Q 022663          161 ICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDE  240 (294)
Q Consensus       161 lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  240 (294)
                      |||||+.+|++|||||||++||+..+.++.+.|+++.++.|.|+|+||||.+++..+||+|++|++|+++..|+++++.+
T Consensus       145 LARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~  224 (353)
T TIGR03265       145 LARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYR  224 (353)
T ss_pred             HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            99999999999999999999999999999999999887779999999999999999999999999999999999999876


Q ss_pred             hhh
Q 022663          241 LRN  243 (294)
Q Consensus       241 ~~~  243 (294)
                      .+.
T Consensus       225 ~p~  227 (353)
T TIGR03265       225 HPA  227 (353)
T ss_pred             CCC
Confidence            543

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=5.5e-49  Score=337.04  Aligned_cols=217  Identities=22%  Similarity=0.302  Sum_probs=176.8

Q ss_pred             ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663           12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG   91 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~   91 (294)
                      +++++++|+++|++   ..+++||||+|++||+++||||||||||||+|+|+|.++|+ +|.+.+.|.+.......    
T Consensus         3 ~lL~v~~l~k~FGG---l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~-~G~v~~~G~~it~l~p~----   74 (250)
T COG0411           3 PLLEVRGLSKRFGG---LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPS-SGTVIFRGRDITGLPPH----   74 (250)
T ss_pred             ceeeeccceeecCC---EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCC-CceEEECCcccCCCCHH----
Confidence            57999999999987   67999999999999999999999999999999999999997 99999998865321110    


Q ss_pred             CcccccccccccccccCc-ccccccccHHHHh-hcC------------CCC---c---HHHHHHHHHHcCCC--cccccc
Q 022663           92 DLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-FGV------------EGS---D---PVRRERLIELLDID--LQWRMH  149 (294)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~------------~~~---~---~~~~~~~l~~l~l~--~~~~~~  149 (294)
                      .+.      +..+...+| ..+++.+|+.++. .+.            ..+   .   .++...+++.+++.  .+.+.+
T Consensus        75 ~ia------r~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~  148 (250)
T COG0411          75 RIA------RLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAG  148 (250)
T ss_pred             HHH------hccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhh
Confidence            000      111111223 3456666654432 210            011   1   23345678888886  578899


Q ss_pred             cCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeE
Q 022663          150 KVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL  229 (294)
Q Consensus       150 ~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i  229 (294)
                      +||+|||+|+.|||||+.+|++||||||.+||.+....++.+.|+++.++.|.||++|.||++.+..+||||++|+.|++
T Consensus       149 ~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~  228 (250)
T COG0411         149 NLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEV  228 (250)
T ss_pred             cCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcC
Confidence            99999999999999999999999999999999999999999999999876789999999999999999999999999999


Q ss_pred             EecccHHHHHHhh
Q 022663          230 RRAEKLAELDELR  242 (294)
Q Consensus       230 ~~~g~~~~~~~~~  242 (294)
                      +.+|+|+++.+++
T Consensus       229 IAeG~P~eV~~dp  241 (250)
T COG0411         229 IAEGTPEEVRNNP  241 (250)
T ss_pred             cccCCHHHHhcCH
Confidence            9999999998765

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=5.2e-48  Score=357.75  Aligned_cols=216  Identities=22%  Similarity=0.294  Sum_probs=178.9

Q ss_pred             cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663           11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS   90 (294)
Q Consensus        11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~   90 (294)
                      +++|+++||+++|++   ..+|+|+||+|++||+++|+||||||||||||+|+|+..|+ +|.+.++|.+.....     
T Consensus         4 ~~~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~-~G~I~~~g~~i~~~~-----   74 (351)
T PRK11432          4 KNFVVLKNITKRFGS---NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPT-EGQIFIDGEDVTHRS-----   74 (351)
T ss_pred             CcEEEEEeEEEEECC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC-ceEEEECCEECCCCC-----
Confidence            458999999999975   56999999999999999999999999999999999999887 899999887542110     


Q ss_pred             CCcccccccccccccccCc-ccccccccHHH-HhhcCC--CCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHH
Q 022663           91 GDLSYLGGSWSKTVGSAGE-IPLQGDFSAEH-MIFGVE--GSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQ  160 (294)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~--~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~  160 (294)
                              ...+.++++++ ..+++.++..+ +.++..  ...    .+++.++++.+++.  .++++.+|||||||||+
T Consensus        75 --------~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVa  146 (351)
T PRK11432         75 --------IQQRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVA  146 (351)
T ss_pred             --------HHHCCEEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHH
Confidence                    01223444444 34566666544 444432  111    23456788888885  58899999999999999


Q ss_pred             HHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHH
Q 022663          161 ICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDE  240 (294)
Q Consensus       161 lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  240 (294)
                      |||||+.+|++|||||||++||+..+.++.+.|+++.++.|.|+|+||||.+++..+||+|++|++|+++..|+++++..
T Consensus       147 LARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~  226 (351)
T PRK11432        147 LARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYR  226 (351)
T ss_pred             HHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            99999999999999999999999999999999999987779999999999999999999999999999999999999876


Q ss_pred             hhh
Q 022663          241 LRN  243 (294)
Q Consensus       241 ~~~  243 (294)
                      .+.
T Consensus       227 ~p~  229 (351)
T PRK11432        227 QPA  229 (351)
T ss_pred             CCC
Confidence            543

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=100.00  E-value=5.6e-48  Score=339.77  Aligned_cols=215  Identities=21%  Similarity=0.259  Sum_probs=168.1

Q ss_pred             EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCc
Q 022663           14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL   93 (294)
Q Consensus        14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~   93 (294)
                      |+++||+++|++   +++|+|+||+|++||+++|+||||||||||+|+|+|++.|+ +|.+.++|.+.......    ..
T Consensus         1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~-~G~i~~~g~~~~~~~~~----~~   72 (235)
T cd03261           1 IELRGLTKSFGG---RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPD-SGEVLIDGEDISGLSEA----EL   72 (235)
T ss_pred             CeEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCEEccccChh----hH
Confidence            478999999965   56999999999999999999999999999999999998886 89998888653211000    00


Q ss_pred             ccccccccccccccCc-ccccccccHHHH-hhcC---CCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHHH
Q 022663           94 SYLGGSWSKTVGSAGE-IPLQGDFSAEHM-IFGV---EGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQIC  162 (294)
Q Consensus        94 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~---~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lA  162 (294)
                          ..++..++++++ ..++..++..++ .+..   ....    ..++.++++.+++.  .++++.+|||||||||+||
T Consensus        73 ----~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia  148 (235)
T cd03261          73 ----YRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALA  148 (235)
T ss_pred             ----HHHhcceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHH
Confidence                001122333333 233444454433 2221   1111    22346678888885  4788999999999999999


Q ss_pred             HHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHH
Q 022663          163 MGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDE  240 (294)
Q Consensus       163 raL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  240 (294)
                      |||+.+|++|||||||+|||+.++..++++|.+++++.|.|||+||||++++..+||+|++|++|+++..|+++++..
T Consensus       149 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  226 (235)
T cd03261         149 RALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA  226 (235)
T ss_pred             HHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcC
Confidence            999999999999999999999999999999999876558999999999999999999999999999999999887653

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=100.00  E-value=5.2e-48  Score=316.56  Aligned_cols=212  Identities=23%  Similarity=0.352  Sum_probs=178.4

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      ||.+++|.+.|+.   .+  =.++++|+.||+++|+|||||||||||++|+|...|. +|.+.++|.+......      
T Consensus         1 ~l~L~~V~~~y~~---~~--~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~-~G~i~i~g~d~t~~~P------   68 (231)
T COG3840           1 MLALDDVRFSYGH---LP--MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPA-SGEILINGVDHTASPP------   68 (231)
T ss_pred             CccccceEEeeCc---ce--EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCC-CceEEEcCeecCcCCc------
Confidence            4778999999964   22  3789999999999999999999999999999999887 9999999886432111      


Q ss_pred             cccccccccccccccC-cccccccccHHHHh-hcCCC------CcHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHH
Q 022663           93 LSYLGGSWSKTVGSAG-EIPLQGDFSAEHMI-FGVEG------SDPVRRERLIELLDID--LQWRMHKVSDGQRRRVQIC  162 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~------~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lA  162 (294)
                             ..+.+.+++ +..+|..+++++++ ++...      .++++++.++..+|+.  .++.|.+|||||||||+||
T Consensus        69 -------~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALA  141 (231)
T COG3840          69 -------AERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALA  141 (231)
T ss_pred             -------ccCChhhhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHH
Confidence                   122233333 35677777766543 44432      3456677888899986  6889999999999999999


Q ss_pred             HHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHHhh
Q 022663          163 MGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDELR  242 (294)
Q Consensus       163 raL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~  242 (294)
                      |+|+.+-+||||||||++|||.-|.+++.++.++|.+.+.|++||||.++++.+++|+++++++|+|.+.|+.++++...
T Consensus       142 RclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~~  221 (231)
T COG3840         142 RCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGK  221 (231)
T ss_pred             HHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999987654


Q ss_pred             h
Q 022663          243 N  243 (294)
Q Consensus       243 ~  243 (294)
                      .
T Consensus       222 ~  222 (231)
T COG3840         222 A  222 (231)
T ss_pred             C
Confidence            4

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=100.00  E-value=8.2e-48  Score=361.12  Aligned_cols=215  Identities=27%  Similarity=0.369  Sum_probs=173.6

Q ss_pred             ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663           12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG   91 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~   91 (294)
                      ++|+++||+++|++   +.+|+++||+|++||+++|+||||||||||||+|+|++.|. +|.+.++|.+.......    
T Consensus         2 ~~L~~~nls~~y~~---~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~-sG~I~l~G~~i~~~~~~----   73 (402)
T PRK09536          2 PMIDVSDLSVEFGD---TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT-AGTVLVAGDDVEALSAR----   73 (402)
T ss_pred             ceEEEeeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC-CcEEEECCEEcCcCCHH----
Confidence            47999999999975   57999999999999999999999999999999999998886 89999988754321100    


Q ss_pred             CcccccccccccccccCc-ccccccccHHHHh-hcC-------C---CCcHHHHHHHHHHcCCC--cccccccCCHHHHH
Q 022663           92 DLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-FGV-------E---GSDPVRRERLIELLDID--LQWRMHKVSDGQRR  157 (294)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~-------~---~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkq  157 (294)
                             ...+.++++++ ..++..++..+++ ++.       .   ..+.++++++++.+++.  .++++.+|||||||
T Consensus        74 -------~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQ  146 (402)
T PRK09536         74 -------AASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQ  146 (402)
T ss_pred             -------HHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHH
Confidence                   11122333333 2233344544432 221       1   01233567788888885  57889999999999


Q ss_pred             HHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHH
Q 022663          158 RVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAE  237 (294)
Q Consensus       158 Rv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~  237 (294)
                      ||+|||||+++|++|||||||+|||+.++.+++++|+++++ .|.|||++|||++++.++|||+++|++|+++..|++++
T Consensus       147 Rv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~-~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~e  225 (402)
T PRK09536        147 RVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVD-DGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPAD  225 (402)
T ss_pred             HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHH
Confidence            99999999999999999999999999999999999999875 58999999999999999999999999999999999998


Q ss_pred             HHHhh
Q 022663          238 LDELR  242 (294)
Q Consensus       238 ~~~~~  242 (294)
                      +....
T Consensus       226 v~~~~  230 (402)
T PRK09536        226 VLTAD  230 (402)
T ss_pred             HhCcH
Confidence            76543

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.1e-48  Score=326.44  Aligned_cols=221  Identities=21%  Similarity=0.215  Sum_probs=175.4

Q ss_pred             cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccC----CCceEEecCCccccccc
Q 022663           11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVG----GRDVVQVLNRSSFHDTQ   86 (294)
Q Consensus        11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~----~~g~i~~~~~~~~~~~~   86 (294)
                      .+.++++||++.|+.   +.+|+|||++|++++++|||||||||||||||++..+....    -.|.+.++|.+..... 
T Consensus         5 ~~~~~~~~l~~yYg~---~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~-   80 (253)
T COG1117           5 IPAIEVRDLNLYYGD---KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPK-   80 (253)
T ss_pred             cceeEecceeEEECc---hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCC-
Confidence            457999999999986   67999999999999999999999999999999999865332    1477888887764321 


Q ss_pred             ccccCCcccccccccccccccCc-ccccccccHHHHhhcCC--CCc----HHHHHHHHHHcCCC------cccccccCCH
Q 022663           87 LVCSGDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMIFGVE--GSD----PVRRERLIELLDID------LQWRMHKVSD  153 (294)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~----~~~~~~~l~~l~l~------~~~~~~~LSg  153 (294)
                            +  ....+++.++++++ +.-++....+++.++..  +..    .+.+++.++...++      +++.+..|||
T Consensus        81 ------~--d~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSG  152 (253)
T COG1117          81 ------V--DVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSG  152 (253)
T ss_pred             ------C--CHHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCCh
Confidence                  1  11235667787776 32333223455556532  111    12344555555542      5677889999


Q ss_pred             HHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecc
Q 022663          154 GQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAE  233 (294)
Q Consensus       154 GqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g  233 (294)
                      |||||++|||||+.+|+|||||||||+|||.+..+|.++|.++.+  ..|||+|||++..+.+++|++.++..|++++.|
T Consensus       153 GQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~--~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g  230 (253)
T COG1117         153 GQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK--KYTIVIVTHNMQQAARVSDYTAFFYLGELVEFG  230 (253)
T ss_pred             hHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh--ccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEc
Confidence            999999999999999999999999999999999999999999864  579999999999999999999999999999999


Q ss_pred             cHHHHHHhhhhh
Q 022663          234 KLAELDELRNST  245 (294)
Q Consensus       234 ~~~~~~~~~~~~  245 (294)
                      +.++++.++..+
T Consensus       231 ~T~~iF~~P~~~  242 (253)
T COG1117         231 PTDKIFTNPKHK  242 (253)
T ss_pred             CHHhhhcCccHH
Confidence            999999876543

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=100.00  E-value=2.6e-47  Score=355.59  Aligned_cols=216  Identities=24%  Similarity=0.353  Sum_probs=178.6

Q ss_pred             cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663           11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS   90 (294)
Q Consensus        11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~   90 (294)
                      +++|+++|++++|++   ..+|+++||+|++||+++|+|||||||||||++|+|+..|+ +|.+.++|.+.....     
T Consensus        12 ~~~L~l~~l~~~~~~---~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~-~G~I~~~g~~i~~~~-----   82 (375)
T PRK09452         12 SPLVELRGISKSFDG---KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPD-SGRIMLDGQDITHVP-----   82 (375)
T ss_pred             CceEEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC-ceEEEECCEECCCCC-----
Confidence            467999999999975   56999999999999999999999999999999999999886 899999887542110     


Q ss_pred             CCcccccccccccccccCc-ccccccccHHH-HhhcCC--CCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHH
Q 022663           91 GDLSYLGGSWSKTVGSAGE-IPLQGDFSAEH-MIFGVE--GSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQ  160 (294)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~--~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~  160 (294)
                              ...+.++++++ ..+++.++..+ +.++..  ...    ..++.++++.+++.  .++++.+|||||||||+
T Consensus        83 --------~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVa  154 (375)
T PRK09452         83 --------AENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVA  154 (375)
T ss_pred             --------HHHCCEEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHH
Confidence                    01123444443 34566666544 444432  111    23456788888885  58899999999999999


Q ss_pred             HHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHH
Q 022663          161 ICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDE  240 (294)
Q Consensus       161 lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  240 (294)
                      |||||+.+|++|||||||++||+..+..+.+.|+++.++.|.|+|+||||.+++..+||+|++|++|+++..|+++++..
T Consensus       155 LARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~  234 (375)
T PRK09452        155 IARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYE  234 (375)
T ss_pred             HHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            99999999999999999999999999999999999887779999999999999999999999999999999999999876


Q ss_pred             hhh
Q 022663          241 LRN  243 (294)
Q Consensus       241 ~~~  243 (294)
                      .+.
T Consensus       235 ~p~  237 (375)
T PRK09452        235 EPK  237 (375)
T ss_pred             Ccc
Confidence            543

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=100.00  E-value=1.3e-47  Score=316.29  Aligned_cols=210  Identities=23%  Similarity=0.357  Sum_probs=172.3

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      ||+++||+++|++  ++++|+||||+|++||++-|+||||||||||+|+|.+...|+ .|.+.++|.+...-..    .+
T Consensus         1 mI~f~~V~k~Y~~--g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt-~G~i~~~~~dl~~l~~----~~   73 (223)
T COG2884           1 MIRFENVSKAYPG--GREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPT-RGKILVNGHDLSRLKG----RE   73 (223)
T ss_pred             CeeehhhhhhcCC--CchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCC-CceEEECCeecccccc----cc
Confidence            5899999999987  367999999999999999999999999999999999999887 9999999887543111    11


Q ss_pred             cccccccccccccccCc-ccccccccH-HHHhhcCC--CCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHHH
Q 022663           93 LSYLGGSWSKTVGSAGE-IPLQGDFSA-EHMIFGVE--GSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQIC  162 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~--~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lA  162 (294)
                      +.    .+++.++.+++ +.+....+. ++..+.+.  +..    .+++.++++..++.  .+..|.+|||||||||+||
T Consensus        74 iP----~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIA  149 (223)
T COG2884          74 IP----FLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIA  149 (223)
T ss_pred             cc----hhhheeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHH
Confidence            21    23556776665 445555554 45444432  211    34556778888885  5678999999999999999


Q ss_pred             HHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEeccc
Q 022663          163 MGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEK  234 (294)
Q Consensus       163 raL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~  234 (294)
                      ||++.+|++||.||||.+|||....+|++++.++.+ .|.|||++|||.+.+..+--|++.|++|+++.+..
T Consensus       150 RAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr-~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~  220 (223)
T COG2884         150 RAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINR-LGTTVLMATHDLELVNRMRHRVLALEDGRLVRDES  220 (223)
T ss_pred             HHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhh-cCcEEEEEeccHHHHHhccCcEEEEeCCEEEeccc
Confidence            999999999999999999999999999999999865 69999999999999999999999999999987643

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.7e-47  Score=355.67  Aligned_cols=214  Identities=26%  Similarity=0.339  Sum_probs=174.5

Q ss_pred             ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663           12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG   91 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~   91 (294)
                      ++|+++||+++|++   +.+|+|+||+|++||+++|+||||||||||||+|+|++.|+ +|.+.++|.+......     
T Consensus         2 ~~l~i~~l~~~~~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~-~G~I~~~g~~i~~~~~-----   72 (369)
T PRK11000          2 ASVTLRNVTKAYGD---VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDIT-SGDLFIGEKRMNDVPP-----   72 (369)
T ss_pred             CEEEEEEEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-ceEEEECCEECCCCCH-----
Confidence            36999999999975   56999999999999999999999999999999999998886 8999988865421100     


Q ss_pred             CcccccccccccccccCc-ccccccccHHHH-hhcCC--CCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHH
Q 022663           92 DLSYLGGSWSKTVGSAGE-IPLQGDFSAEHM-IFGVE--GSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQI  161 (294)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~--~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~l  161 (294)
                              ..+.++++++ ..+++.++..++ .++..  ...    .+++.++++.+++.  .++++.+|||||||||+|
T Consensus        73 --------~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaL  144 (369)
T PRK11000         73 --------AERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAI  144 (369)
T ss_pred             --------hHCCEEEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHH
Confidence                    0112333333 334555555443 33321  111    23456788888885  578899999999999999


Q ss_pred             HHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHHh
Q 022663          162 CMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDEL  241 (294)
Q Consensus       162 AraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  241 (294)
                      ||||+.+|++|||||||++||+.++..+++.|+++.++.|.|+|+||||++++..+||+|++|++|+++..|+++++...
T Consensus       145 AraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~  224 (369)
T PRK11000        145 GRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY  224 (369)
T ss_pred             HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence            99999999999999999999999999999999998776689999999999999999999999999999999999988764


Q ss_pred             h
Q 022663          242 R  242 (294)
Q Consensus       242 ~  242 (294)
                      +
T Consensus       225 p  225 (369)
T PRK11000        225 P  225 (369)
T ss_pred             c
Confidence            3

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=100.00  E-value=3.9e-47  Score=352.33  Aligned_cols=213  Identities=23%  Similarity=0.334  Sum_probs=175.3

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      +|+++||+++|++   ..+|+|+||+|++||+++|+||||||||||||+|+|++.|+ +|.+.++|.+.....       
T Consensus         2 ~L~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~-~G~I~i~g~~i~~~~-------   70 (353)
T PRK10851          2 SIEIANIKKSFGR---TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQT-SGHIRFHGTDVSRLH-------   70 (353)
T ss_pred             EEEEEEEEEEeCC---eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEECCEECCCCC-------
Confidence            5899999999975   57999999999999999999999999999999999998886 899999887542110       


Q ss_pred             cccccccccccccccCc-ccccccccHHH-HhhcCC------CCc----HHHHHHHHHHcCCC--cccccccCCHHHHHH
Q 022663           93 LSYLGGSWSKTVGSAGE-IPLQGDFSAEH-MIFGVE------GSD----PVRRERLIELLDID--LQWRMHKVSDGQRRR  158 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~------~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqR  158 (294)
                            ...+.++++++ ..+++.++..+ +.++..      ...    .+++.++++.+++.  .++++.+||||||||
T Consensus        71 ------~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QR  144 (353)
T PRK10851         71 ------ARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQR  144 (353)
T ss_pred             ------HHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHH
Confidence                  01122344433 33455555544 333321      111    23456788888885  588999999999999


Q ss_pred             HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663          159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL  238 (294)
Q Consensus       159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~  238 (294)
                      |+|||||+.+|++|||||||++||+..+..+.+.|.++.++.|.|+|+||||++++..+||+|++|++|+++..|+++++
T Consensus       145 valArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i  224 (353)
T PRK10851        145 VALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQV  224 (353)
T ss_pred             HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence            99999999999999999999999999999999999998876789999999999999999999999999999999999998


Q ss_pred             HHhh
Q 022663          239 DELR  242 (294)
Q Consensus       239 ~~~~  242 (294)
                      .+.+
T Consensus       225 ~~~p  228 (353)
T PRK10851        225 WREP  228 (353)
T ss_pred             HhCc
Confidence            7654

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=100.00  E-value=3.3e-47  Score=335.77  Aligned_cols=212  Identities=25%  Similarity=0.311  Sum_probs=168.4

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      +|+++||+++|++   +++|+|+||+|++||+++|+||||||||||+|+|+|++.|+ +|.+.++|.+......  ... 
T Consensus         2 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~-~G~i~~~g~~~~~~~~--~~~-   74 (239)
T cd03296           2 SIEVRNVSKRFGD---FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPD-SGTILFGGEDATDVPV--QER-   74 (239)
T ss_pred             EEEEEeEEEEECC---EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCEECCcCCc--ccc-
Confidence            5899999999975   57999999999999999999999999999999999998876 8999888865321100  011 


Q ss_pred             cccccccccccccccCc-ccccccccHHH-HhhcCC--CC----c----HHHHHHHHHHcCCC--cccccccCCHHHHHH
Q 022663           93 LSYLGGSWSKTVGSAGE-IPLQGDFSAEH-MIFGVE--GS----D----PVRRERLIELLDID--LQWRMHKVSDGQRRR  158 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~--~~----~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqR  158 (294)
                                .++++++ ..++...+..+ +.+...  ..    .    .+...++++.+++.  .++++.+||||||||
T Consensus        75 ----------~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr  144 (239)
T cd03296          75 ----------NVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQR  144 (239)
T ss_pred             ----------ceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHH
Confidence                      1223322 22333344433 222211  10    1    12345678888885  477899999999999


Q ss_pred             HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663          159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL  238 (294)
Q Consensus       159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~  238 (294)
                      |+|||||+.+|++|||||||+|||+.++..+.++|.+++++.|+|||++|||++++..+||++++|++|+++..|+++++
T Consensus       145 l~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  224 (239)
T cd03296         145 VALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEV  224 (239)
T ss_pred             HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHH
Confidence            99999999999999999999999999999999999998765689999999999999999999999999999999998887


Q ss_pred             HHh
Q 022663          239 DEL  241 (294)
Q Consensus       239 ~~~  241 (294)
                      .+.
T Consensus       225 ~~~  227 (239)
T cd03296         225 YDH  227 (239)
T ss_pred             hcC
Confidence            543

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=100.00  E-value=2.9e-47  Score=330.43  Aligned_cols=204  Identities=25%  Similarity=0.384  Sum_probs=159.8

Q ss_pred             EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCc
Q 022663           14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL   93 (294)
Q Consensus        14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~   93 (294)
                      |+++|++++|++   +++|+|+||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|.+......  ....+
T Consensus         1 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~-~G~i~~~g~~~~~~~~--~~~~i   74 (213)
T cd03259           1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPD-SGEILIDGRDVTGVPP--ERRNI   74 (213)
T ss_pred             CeeeeeEEEeCC---eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CeEEEECCEEcCcCch--hhccE
Confidence            478999999965   57999999999999999999999999999999999998876 8999888865321100  01122


Q ss_pred             ccccccccccccccCcccccccccHHHH-hhcC--CCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHH
Q 022663           94 SYLGGSWSKTVGSAGEIPLQGDFSAEHM-IFGV--EGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMG  164 (294)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAra  164 (294)
                      .+.++.          ..++...+..+. .+..  ....    .+++.++++.+++.  .++++.+||||||||++||||
T Consensus        75 ~~v~q~----------~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~a  144 (213)
T cd03259          75 GMVFQD----------YALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARA  144 (213)
T ss_pred             EEEcCc----------hhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHH
Confidence            222221          122333343332 2211  1111    23456778888885  478889999999999999999


Q ss_pred             HccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecc
Q 022663          165 LLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAE  233 (294)
Q Consensus       165 L~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g  233 (294)
                      |+.+|++|||||||+|||+.++..++++|.++.++.|.|||++|||++++..+||+|++|++|+++..|
T Consensus       145 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g  213 (213)
T cd03259         145 LAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG  213 (213)
T ss_pred             HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence            999999999999999999999999999999987656899999999999999999999999999997654

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=100.00  E-value=3.3e-47  Score=331.73  Aligned_cols=208  Identities=23%  Similarity=0.334  Sum_probs=164.6

Q ss_pred             EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCc
Q 022663           14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL   93 (294)
Q Consensus        14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~   93 (294)
                      |+++|++++|++   +++|+|+||+|.+||+++|+||||||||||+++|+|++.|+ +|.+.++|.+..... .      
T Consensus         1 i~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~-~G~i~~~g~~~~~~~-~------   69 (220)
T cd03265           1 IEVENLVKKYGD---FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPT-SGRATVAGHDVVREP-R------   69 (220)
T ss_pred             CEEEEEEEEECC---EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCEecCcCh-H------
Confidence            578999999975   57999999999999999999999999999999999998876 899988876432100 0      


Q ss_pred             ccccccccccccccCc-ccccccccHHH-Hhhc--CCCC----cHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHH
Q 022663           94 SYLGGSWSKTVGSAGE-IPLQGDFSAEH-MIFG--VEGS----DPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICM  163 (294)
Q Consensus        94 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~--~~~~----~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAr  163 (294)
                           .+...++++++ ..+++..+..+ +.+.  ....    ..+++.++++.+++.  .++++.+|||||||||+|||
T Consensus        70 -----~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~  144 (220)
T cd03265          70 -----EVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIAR  144 (220)
T ss_pred             -----HHhhcEEEecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHH
Confidence                 01112333332 22333344333 2221  1111    123456788888885  47889999999999999999


Q ss_pred             HHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHH
Q 022663          164 GLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAE  237 (294)
Q Consensus       164 aL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~  237 (294)
                      ||+.+|++|||||||++||+.++..+.++|.++.++.|.|||++|||++++..+||++++|++|+++..+++++
T Consensus       145 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~  218 (220)
T cd03265         145 SLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEE  218 (220)
T ss_pred             HHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHH
Confidence            99999999999999999999999999999999876558999999999999999999999999999998887665

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=100.00  E-value=4.5e-47  Score=335.45  Aligned_cols=215  Identities=21%  Similarity=0.292  Sum_probs=167.0

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      ||+++||+++|+.  ++++|+|+||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|.+.......    .
T Consensus         1 ~l~~~~l~~~~~~--~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~-~G~i~~~g~~~~~~~~~----~   73 (243)
T TIGR02315         1 MLEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPS-SGSILLEGTDITKLRGK----K   73 (243)
T ss_pred             CeEEEeeeeecCC--CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC-ccEEEECCEEhhhCCHH----H
Confidence            4889999999972  156999999999999999999999999999999999998876 89999888653210000    0


Q ss_pred             cccccccccccccccCc-ccccccccHHHHh-hcCC--------------CCcHHHHHHHHHHcCCC--cccccccCCHH
Q 022663           93 LSYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-FGVE--------------GSDPVRRERLIELLDID--LQWRMHKVSDG  154 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~--------------~~~~~~~~~~l~~l~l~--~~~~~~~LSgG  154 (294)
                      .    ..++..++++++ ..++...+..+++ +...              .....++.++++.+++.  .++++.+||||
T Consensus        74 ~----~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG  149 (243)
T TIGR02315        74 L----RKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGG  149 (243)
T ss_pred             H----HHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHH
Confidence            0    001122333333 2233334443322 2110              01123456678888885  47889999999


Q ss_pred             HHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEeccc
Q 022663          155 QRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEK  234 (294)
Q Consensus       155 qkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~  234 (294)
                      |||||+|||||+.+|++|||||||+|||+.++..+.++|.+++++.|.|||+||||++++.++||++++|++|+++..|+
T Consensus       150 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~  229 (243)
T TIGR02315       150 QQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGA  229 (243)
T ss_pred             HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCC
Confidence            99999999999999999999999999999999999999999876568999999999999999999999999999999998


Q ss_pred             HHHH
Q 022663          235 LAEL  238 (294)
Q Consensus       235 ~~~~  238 (294)
                      ++++
T Consensus       230 ~~~~  233 (243)
T TIGR02315       230 PSEL  233 (243)
T ss_pred             HHHh
Confidence            8775

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=100.00  E-value=4.1e-47  Score=346.36  Aligned_cols=212  Identities=24%  Similarity=0.357  Sum_probs=170.0

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      +|+++||+++|++   ..+|+++||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|.+.....       
T Consensus         4 ~i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~~-------   72 (303)
T TIGR01288         4 AIDLVGVSKSYGD---KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD-RGKITVLGEPVPSRA-------   72 (303)
T ss_pred             EEEEEeEEEEeCC---eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCEECcccH-------
Confidence            6999999999975   56999999999999999999999999999999999998876 899998886532110       


Q ss_pred             cccccccccccccccCc-ccccccccHHHHh-h-c-CCCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHHH
Q 022663           93 LSYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-F-G-VEGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQIC  162 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~-~-~~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lA  162 (294)
                           ...+..++++++ ..+++.++..+++ + . .....    ..+..++++.+++.  .++++.+|||||||||+||
T Consensus        73 -----~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la  147 (303)
T TIGR01288        73 -----RLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLA  147 (303)
T ss_pred             -----HHHhhcEEEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHH
Confidence                 011122333333 2233444544332 1 1 11111    12345678888885  4788999999999999999


Q ss_pred             HHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHHh
Q 022663          163 MGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDEL  241 (294)
Q Consensus       163 raL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  241 (294)
                      |||+.+|++|||||||+|||+.++..++++|.++++ .|.|||++|||++++..+||++++|++|+++..|+++++...
T Consensus       148 ~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  225 (303)
T TIGR01288       148 RALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-RGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE  225 (303)
T ss_pred             HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence            999999999999999999999999999999999865 589999999999999999999999999999999999887643

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=7.1e-47  Score=353.08  Aligned_cols=216  Identities=25%  Similarity=0.317  Sum_probs=178.5

Q ss_pred             cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663           11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS   90 (294)
Q Consensus        11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~   90 (294)
                      .++|+++|++++|++   ..+|+++||+|++||+++|+||||||||||||+|+|+..|+ .|.+.++|.+.....     
T Consensus        17 ~~~l~l~~v~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~-~G~I~i~g~~i~~~~-----   87 (377)
T PRK11607         17 TPLLEIRNLTKSFDG---QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPT-AGQIMLDGVDLSHVP-----   87 (377)
T ss_pred             CceEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-ceEEEECCEECCCCC-----
Confidence            457999999999975   46999999999999999999999999999999999999887 899998886532100     


Q ss_pred             CCcccccccccccccccCc-ccccccccHHHH-hhcCC--CCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHH
Q 022663           91 GDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHM-IFGVE--GSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQ  160 (294)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~--~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~  160 (294)
                              ..++.++++++ ..+++.++..++ .++..  ...    .+++.++++.+++.  .++++.+|||||||||+
T Consensus        88 --------~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVa  159 (377)
T PRK11607         88 --------PYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVA  159 (377)
T ss_pred             --------HHHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHH
Confidence                    11223444444 346666665544 34322  111    23456778888885  58899999999999999


Q ss_pred             HHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHH
Q 022663          161 ICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDE  240 (294)
Q Consensus       161 lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  240 (294)
                      |||||+.+|++|||||||++||+..+..+.+.|.++.++.|.|+|+||||.+++..+||++++|++|+++..|+++++..
T Consensus       160 LARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~  239 (377)
T PRK11607        160 LARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYE  239 (377)
T ss_pred             HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHh
Confidence            99999999999999999999999999999999999887779999999999999999999999999999999999999876


Q ss_pred             hhh
Q 022663          241 LRN  243 (294)
Q Consensus       241 ~~~  243 (294)
                      .+.
T Consensus       240 ~p~  242 (377)
T PRK11607        240 HPT  242 (377)
T ss_pred             CCc
Confidence            543

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=100.00  E-value=4.6e-47  Score=352.59  Aligned_cols=213  Identities=23%  Similarity=0.306  Sum_probs=176.0

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCC--ceEEecCCccccccccccc
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGR--DVVQVLNRSSFHDTQLVCS   90 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~--g~i~~~~~~~~~~~~~~~~   90 (294)
                      .|+++||+++|++   ..+|+|+||+|++||+++|+|||||||||||++|+|+..|+ +  |.+.++|.+.....     
T Consensus         5 ~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~-~~~G~i~~~g~~~~~~~-----   75 (362)
T TIGR03258         5 GIRIDHLRVAYGA---NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAA-GLTGRIAIADRDLTHAP-----   75 (362)
T ss_pred             EEEEEEEEEEECC---eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CCCEEEEECCEECCCCC-----
Confidence            5899999999975   46999999999999999999999999999999999998886 7  99999887542110     


Q ss_pred             CCcccccccccccccccCc-ccccccccHHHH-hhcCC--CCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHH
Q 022663           91 GDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHM-IFGVE--GSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQ  160 (294)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~--~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~  160 (294)
                              ...+.++++++ ..+++.++..++ .++..  ...    ..++.++++.+++.  .++++.+|||||||||+
T Consensus        76 --------~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRva  147 (362)
T TIGR03258        76 --------PHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIA  147 (362)
T ss_pred             --------HHHCCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHH
Confidence                    01123444443 345566665443 33321  111    23456788888885  58899999999999999


Q ss_pred             HHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhc-CcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHH
Q 022663          161 ICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQR-GATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELD  239 (294)
Q Consensus       161 lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~-g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  239 (294)
                      |||||+.+|++|||||||++||+..+.++.+.|.++.++. |.|+|+||||++++..+||+|++|++|+++..|+++++.
T Consensus       148 LARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~  227 (362)
T TIGR03258       148 IARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALY  227 (362)
T ss_pred             HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence            9999999999999999999999999999999999987765 799999999999999999999999999999999999987


Q ss_pred             Hhh
Q 022663          240 ELR  242 (294)
Q Consensus       240 ~~~  242 (294)
                      +.+
T Consensus       228 ~~p  230 (362)
T TIGR03258       228 DAP  230 (362)
T ss_pred             hCc
Confidence            654

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=100.00  E-value=7.6e-47  Score=333.53  Aligned_cols=215  Identities=25%  Similarity=0.325  Sum_probs=166.1

Q ss_pred             EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCc
Q 022663           14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL   93 (294)
Q Consensus        14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~   93 (294)
                      |+++||+++|++  ++++|+|+||+|.+||+++|+||||||||||+++|+|++.|+ +|.+.++|.+.......    ..
T Consensus         1 l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~-~G~i~~~g~~~~~~~~~----~~   73 (241)
T cd03256           1 IEVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPT-SGSVLIDGTDINKLKGK----AL   73 (241)
T ss_pred             CEEeeEEEecCC--ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC-CceEEECCEeccccCHh----HH
Confidence            468999999964  146999999999999999999999999999999999998776 89998888653211000    00


Q ss_pred             ccccccccccccccCc-ccccccccHHHHh-hcCC----------C----CcHHHHHHHHHHcCCC--cccccccCCHHH
Q 022663           94 SYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-FGVE----------G----SDPVRRERLIELLDID--LQWRMHKVSDGQ  155 (294)
Q Consensus        94 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~----------~----~~~~~~~~~l~~l~l~--~~~~~~~LSgGq  155 (294)
                          ......++++++ ..++...+..+++ +...          .    ...+++.++++.+++.  .++++.+|||||
T Consensus        74 ----~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~  149 (241)
T cd03256          74 ----RQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQ  149 (241)
T ss_pred             ----HHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHH
Confidence                001112333332 2233334433322 2110          0    1123455678888885  478899999999


Q ss_pred             HHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccH
Q 022663          156 RRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKL  235 (294)
Q Consensus       156 kqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~  235 (294)
                      ||||+|||||+.+|++|||||||+|||+.++..++++|.+++++.|.|||++|||++++..+||++++|++|+++..+++
T Consensus       150 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~  229 (241)
T cd03256         150 QQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPP  229 (241)
T ss_pred             HHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCH
Confidence            99999999999999999999999999999999999999998765689999999999999999999999999999999988


Q ss_pred             HHHH
Q 022663          236 AELD  239 (294)
Q Consensus       236 ~~~~  239 (294)
                      +++.
T Consensus       230 ~~~~  233 (241)
T cd03256         230 AELT  233 (241)
T ss_pred             HHhh
Confidence            8763

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4e-47  Score=351.61  Aligned_cols=220  Identities=24%  Similarity=0.290  Sum_probs=172.4

Q ss_pred             cEEEcceEEEcCCC-CCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663           13 SIKVCGMQFSYEGN-DKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG   91 (294)
Q Consensus        13 ~l~~~~ls~~y~~~-~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~   91 (294)
                      ||+++||+++|+.. ..+++|+|+||+|++||+++|+||||||||||+|+|+|++.|+ +|.+.++|.+.......    
T Consensus         1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~-~G~I~~~g~~i~~~~~~----   75 (343)
T PRK11153          1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPT-SGRVLVDGQDLTALSEK----   75 (343)
T ss_pred             CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-ceEEEECCEECCcCCHH----
Confidence            58999999999721 1246999999999999999999999999999999999998886 89999988754211000    


Q ss_pred             CcccccccccccccccCc-ccccccccHHH-HhhcC--CCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHH
Q 022663           92 DLSYLGGSWSKTVGSAGE-IPLQGDFSAEH-MIFGV--EGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQI  161 (294)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~l  161 (294)
                      ..    ..++..++++++ ..++...+..+ +.+..  ....    .++..++++.+++.  .++++.+|||||||||+|
T Consensus        76 ~~----~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~l  151 (343)
T PRK11153         76 EL----RKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAI  151 (343)
T ss_pred             HH----HHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHH
Confidence            00    001123333333 23344444433 32221  1111    23456788888885  578899999999999999


Q ss_pred             HHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHHh
Q 022663          162 CMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDEL  241 (294)
Q Consensus       162 AraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  241 (294)
                      ||||+.+|++|||||||+|||+.++..++++|.++.++.|+|||++|||++++.++||++++|++|+++..|+++++...
T Consensus       152 AraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~~  231 (343)
T PRK11153        152 ARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFSH  231 (343)
T ss_pred             HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence            99999999999999999999999999999999998766689999999999999999999999999999999999888654

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=100.00  E-value=1.2e-46  Score=335.49  Aligned_cols=207  Identities=21%  Similarity=0.271  Sum_probs=165.6

Q ss_pred             cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663           11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS   90 (294)
Q Consensus        11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~   90 (294)
                      .++|+++||+++|++   +++|+++||+|++||+++|+||||||||||+|+|+|++.|+ +|.+.+++.+...     ..
T Consensus        10 ~~~l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~-~G~i~~~g~~~~~-----~~   80 (257)
T PRK11247         10 GTPLLLNAVSKRYGE---RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPS-AGELLAGTAPLAE-----AR   80 (257)
T ss_pred             CCcEEEEEEEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CeEEEECCEEHHH-----hh
Confidence            357999999999975   57999999999999999999999999999999999998876 8888876643210     01


Q ss_pred             CCcccccccccccccccCcccccccccHHHHh-hcCCCCcHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHHHcc
Q 022663           91 GDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMI-FGVEGSDPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMGLLH  167 (294)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL~~  167 (294)
                      ..+.+.++.          ..+++..+..+++ +........+..++++.+++.  .++++.+|||||||||+|||||+.
T Consensus        81 ~~i~~v~q~----------~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~  150 (257)
T PRK11247         81 EDTRLMFQD----------ARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIH  150 (257)
T ss_pred             CceEEEecC----------ccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhc
Confidence            122222211          2233334444433 332211234556788888885  478899999999999999999999


Q ss_pred             CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHH
Q 022663          168 PFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLA  236 (294)
Q Consensus       168 ~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~  236 (294)
                      +|++|||||||+|||+.++..+.++|.++.++.+.|||+||||++++..+||+|++|++|+++..++.+
T Consensus       151 ~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~  219 (257)
T PRK11247        151 RPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD  219 (257)
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence            999999999999999999999999999987666899999999999999999999999999999887654

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=100.00  E-value=1.5e-46  Score=345.82  Aligned_cols=224  Identities=15%  Similarity=0.182  Sum_probs=174.5

Q ss_pred             CcccEEEcceEEEcCCCC----------CCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCC
Q 022663           10 KLNSIKVCGMQFSYEGND----------KPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNR   79 (294)
Q Consensus        10 ~~~~l~~~~ls~~y~~~~----------~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~   79 (294)
                      ..++|+++||+++|+...          ...+++||||+|++||+++|+|+||||||||+++|+|++.|+ +|.+.++|.
T Consensus         5 ~~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~-~G~I~~~G~   83 (331)
T PRK15079          5 KKVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKAT-DGEVAWLGK   83 (331)
T ss_pred             CCceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC-CcEEEECCE
Confidence            456899999999996311          146899999999999999999999999999999999998876 899999887


Q ss_pred             cccccccccccCCcccccccccccccccCcc---cccccccHHHHh-hc---CC-CCc----HHHHHHHHHHcCCC---c
Q 022663           80 SSFHDTQLVCSGDLSYLGGSWSKTVGSAGEI---PLQGDFSAEHMI-FG---VE-GSD----PVRRERLIELLDID---L  144 (294)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~---~~-~~~----~~~~~~~l~~l~l~---~  144 (294)
                      +........    .    ..++..++++++.   .+.+.++..+++ +.   .. ...    .+++.++++.+++.   .
T Consensus        84 ~i~~~~~~~----~----~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~  155 (331)
T PRK15079         84 DLLGMKDDE----W----RAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLI  155 (331)
T ss_pred             ECCcCCHHH----H----HHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHh
Confidence            643211000    0    0011223333332   133344443332 11   10 111    23346778888883   4


Q ss_pred             ccccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEe
Q 022663          145 QWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYI  224 (294)
Q Consensus       145 ~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l  224 (294)
                      ++++++|||||+|||+|||||+.+|++|||||||++||+.++.+++++|.++.++.|.|+|+||||++++..+||+|++|
T Consensus       156 ~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl  235 (331)
T PRK15079        156 NRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVM  235 (331)
T ss_pred             cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            78999999999999999999999999999999999999999999999999987767999999999999999999999999


Q ss_pred             eCCeEEecccHHHHHHhh
Q 022663          225 QDGELRRAEKLAELDELR  242 (294)
Q Consensus       225 ~~G~i~~~g~~~~~~~~~  242 (294)
                      ++|++++.|+.+++.+..
T Consensus       236 ~~G~ive~g~~~~i~~~~  253 (331)
T PRK15079        236 YLGHAVELGTYDEVYHNP  253 (331)
T ss_pred             ECCEEEEEcCHHHHHcCC
Confidence            999999999999887653

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.5e-46  Score=340.20  Aligned_cols=217  Identities=24%  Similarity=0.302  Sum_probs=169.9

Q ss_pred             cEEEcceEEEcCCCC--CCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663           13 SIKVCGMQFSYEGND--KPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS   90 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~--~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~   90 (294)
                      +|+++||+++|++..  .+++|+||||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|.+.......   
T Consensus         2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~~~~---   77 (287)
T PRK13637          2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPT-SGKIIIDGVDITDKKVK---   77 (287)
T ss_pred             EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC-ccEEEECCEECCCcCcc---
Confidence            489999999996421  136999999999999999999999999999999999998886 89999988654221000   


Q ss_pred             CCcccccccccccccccCccc---ccccccH-HHHhhcC--CCCc----HHHHHHHHHHcCCC----cccccccCCHHHH
Q 022663           91 GDLSYLGGSWSKTVGSAGEIP---LQGDFSA-EHMIFGV--EGSD----PVRRERLIELLDID----LQWRMHKVSDGQR  156 (294)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~--~~~~----~~~~~~~l~~l~l~----~~~~~~~LSgGqk  156 (294)
                            ....+..++++++.+   ++. .+. +++.++.  ....    .+++.++++.+++.    .++++.+||||||
T Consensus        78 ------~~~~~~~ig~v~q~~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~  150 (287)
T PRK13637         78 ------LSDIRKKVGLVFQYPEYQLFE-ETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQK  150 (287)
T ss_pred             ------HHHHhhceEEEecCchhcccc-ccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHH
Confidence                  001112233333321   222 233 3333321  1112    12456788888884    4788999999999


Q ss_pred             HHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHH
Q 022663          157 RRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLA  236 (294)
Q Consensus       157 qRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~  236 (294)
                      ||++|||||+.+|++|||||||+|||+.++.+++++|.+++++.|.|||+||||++++..+||||++|++|+++..|+++
T Consensus       151 qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~  230 (287)
T PRK13637        151 RRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPR  230 (287)
T ss_pred             HHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence            99999999999999999999999999999999999999987666899999999999999999999999999999999998


Q ss_pred             HHHH
Q 022663          237 ELDE  240 (294)
Q Consensus       237 ~~~~  240 (294)
                      ++.+
T Consensus       231 ~~~~  234 (287)
T PRK13637        231 EVFK  234 (287)
T ss_pred             HHHh
Confidence            8765

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=100.00  E-value=1.2e-46  Score=330.80  Aligned_cols=219  Identities=23%  Similarity=0.286  Sum_probs=168.9

Q ss_pred             cEEEcceEEEcCCCC-CCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663           13 SIKVCGMQFSYEGND-KPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG   91 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~-~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~   91 (294)
                      ||+++|++++|++.. ..++|+++||+|++||+++|+||||||||||+++|+|+++|+ +|.+.++|.+.......    
T Consensus         1 ~i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~----   75 (233)
T cd03258           1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPT-SGSVLVDGTDLTLLSGK----   75 (233)
T ss_pred             CeEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEECCEEcccCCHH----
Confidence            489999999997510 027999999999999999999999999999999999998876 89999888653211000    


Q ss_pred             CcccccccccccccccCc-ccccccccHHHH-hhcC--CCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHH
Q 022663           92 DLSYLGGSWSKTVGSAGE-IPLQGDFSAEHM-IFGV--EGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQI  161 (294)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~l  161 (294)
                      ..    ......++++++ ..++...+..+. .+..  ....    ...+.++++.+++.  .++++.+|||||+|||+|
T Consensus        76 ~~----~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~l  151 (233)
T cd03258          76 EL----RKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGI  151 (233)
T ss_pred             HH----HHHHhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHH
Confidence            00    001122333333 223333444332 2211  1111    22456778888885  477899999999999999


Q ss_pred             HHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHH
Q 022663          162 CMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDE  240 (294)
Q Consensus       162 AraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  240 (294)
                      ||||+.+|++|||||||+|||+.++..+.++|.++.++.|.|||++|||++++..+||++++|++|+++..++.+++.+
T Consensus       152 a~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  230 (233)
T cd03258         152 ARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA  230 (233)
T ss_pred             HHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence            9999999999999999999999999999999999876568999999999999999999999999999999998877643

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=100.00  E-value=1.3e-46  Score=337.52  Aligned_cols=219  Identities=17%  Similarity=0.197  Sum_probs=170.5

Q ss_pred             cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663           11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS   90 (294)
Q Consensus        11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~   90 (294)
                      +++|+++||+++|++   +.+|+|+||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|.+.......   
T Consensus         5 ~~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~i~~~~~~---   77 (269)
T PRK11831          5 ANLVDMRGVSFTRGN---RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPD-HGEILFDGENIPAMSRS---   77 (269)
T ss_pred             cceEEEeCeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEECCEEccccChh---
Confidence            468999999999965   57999999999999999999999999999999999998876 89999887643210000   


Q ss_pred             CCcccccccccccccccCc-ccccccccHHHHh-hcC---CCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHH
Q 022663           91 GDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-FGV---EGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRV  159 (294)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~---~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv  159 (294)
                       ..    ...+..++++++ ..++...+..+++ +..   ...+    ......+++.+++.  .++++.+|||||||||
T Consensus        78 -~~----~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv  152 (269)
T PRK11831         78 -RL----YTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRA  152 (269)
T ss_pred             -hH----HHHhhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHH
Confidence             00    000112223322 2233334443322 211   1111    12345678888885  5778999999999999


Q ss_pred             HHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHH
Q 022663          160 QICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELD  239 (294)
Q Consensus       160 ~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  239 (294)
                      +|||||+.+|++|||||||+|||+.++..+.++|.++.++.|.|||+||||++++..+||++++|++|+++..|+++++.
T Consensus       153 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  232 (269)
T PRK11831        153 ALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQ  232 (269)
T ss_pred             HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHh
Confidence            99999999999999999999999999999999999987656899999999999999999999999999999999998876


Q ss_pred             Hh
Q 022663          240 EL  241 (294)
Q Consensus       240 ~~  241 (294)
                      +.
T Consensus       233 ~~  234 (269)
T PRK11831        233 AN  234 (269)
T ss_pred             cC
Confidence            53

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3e-46  Score=330.15  Aligned_cols=214  Identities=20%  Similarity=0.258  Sum_probs=168.9

Q ss_pred             ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663           12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG   91 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~   91 (294)
                      .+|+++|++++|++   +++|+|+||+|.+||+++|+||||||||||+++|+|++.|+ +|.+.++|.+.......    
T Consensus         2 ~~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~i~~~~~~----   73 (241)
T PRK14250          2 NEIEFKEVSYSSFG---KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPT-EGSILIDGVDIKTIDVI----   73 (241)
T ss_pred             ceEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEECCEEhhhcChH----
Confidence            36999999999965   46999999999999999999999999999999999998876 89999888653211000    


Q ss_pred             CcccccccccccccccCcc-cccccccHHHH-hhcC--CCCcHHHHHHHHHHcCCC---cccccccCCHHHHHHHHHHHH
Q 022663           92 DLSYLGGSWSKTVGSAGEI-PLQGDFSAEHM-IFGV--EGSDPVRRERLIELLDID---LQWRMHKVSDGQRRRVQICMG  164 (294)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~--~~~~~~~~~~~l~~l~l~---~~~~~~~LSgGqkqRv~lAra  164 (294)
                             .++..++++++. .++. .+..+. .+..  ......+...+++.+++.   .++++.+||||||||++||||
T Consensus        74 -------~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~a  145 (241)
T PRK14250         74 -------DLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIART  145 (241)
T ss_pred             -------HhhhcEEEEecCchhch-hhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHH
Confidence                   011122333321 2222 233332 2211  111233456788888884   367899999999999999999


Q ss_pred             HccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHHh
Q 022663          165 LLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDEL  241 (294)
Q Consensus       165 L~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  241 (294)
                      |+.+|++|||||||+|||+.++..+.+.|.++.++.|.|||++|||++++..+||+|++|++|+++..++++++...
T Consensus       146 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~  222 (241)
T PRK14250        146 LANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTN  222 (241)
T ss_pred             HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcC
Confidence            99999999999999999999999999999988765689999999999999999999999999999999999887653

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.7e-46  Score=345.00  Aligned_cols=224  Identities=17%  Similarity=0.191  Sum_probs=171.4

Q ss_pred             ccEEEcceEEEcCCCCC-CCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccC---CCceEEecCCcccccccc
Q 022663           12 NSIKVCGMQFSYEGNDK-PPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVG---GRDVVQVLNRSSFHDTQL   87 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~~-~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~---~~g~i~~~~~~~~~~~~~   87 (294)
                      ++|+++||++.|+.... ..+|+||||+|++||+++|+|+||||||||+++|+|++.+.   .+|.+.++|.+.......
T Consensus         2 ~~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~   81 (326)
T PRK11022          2 ALLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEK   81 (326)
T ss_pred             ceEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHH
Confidence            47999999999965211 35999999999999999999999999999999999988642   378999988754221100


Q ss_pred             cccCCcccccccccccccccCccc---ccccccHHH-Hhh---cCCCC----cHHHHHHHHHHcCCC-----cccccccC
Q 022663           88 VCSGDLSYLGGSWSKTVGSAGEIP---LQGDFSAEH-MIF---GVEGS----DPVRRERLIELLDID-----LQWRMHKV  151 (294)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~---~~~~~----~~~~~~~~l~~l~l~-----~~~~~~~L  151 (294)
                      ...       ......++++++.+   +.+.++..+ +..   .....    ..+++.++++.+++.     +++++++|
T Consensus        82 ~~~-------~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~L  154 (326)
T PRK11022         82 ERR-------NLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQL  154 (326)
T ss_pred             HHH-------HHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhC
Confidence            000       00011233333321   233333321 111   11111    123456788888884     36789999


Q ss_pred             CHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEe
Q 022663          152 SDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRR  231 (294)
Q Consensus       152 SgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~  231 (294)
                      ||||+|||+|||||+.+|++||+||||++||+.++.+++++|.++.++.|.|+|+||||++++..+||||++|++|+|++
T Consensus       155 SgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive  234 (326)
T PRK11022        155 SGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVE  234 (326)
T ss_pred             CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence            99999999999999999999999999999999999999999999987679999999999999999999999999999999


Q ss_pred             cccHHHHHHhh
Q 022663          232 AEKLAELDELR  242 (294)
Q Consensus       232 ~g~~~~~~~~~  242 (294)
                      .|+.+++.+..
T Consensus       235 ~g~~~~~~~~p  245 (326)
T PRK11022        235 TGKAHDIFRAP  245 (326)
T ss_pred             ECCHHHHhhCC
Confidence            99999987653

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=100.00  E-value=7.6e-47  Score=328.46  Aligned_cols=206  Identities=24%  Similarity=0.359  Sum_probs=158.5

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      ||+++|++++|++. .+++|+++||+|++||+++|+||||||||||+|+|+|++.|+ +|.+.++|.+.......    .
T Consensus         1 ~l~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~-~G~i~~~g~~~~~~~~~----~   74 (216)
T TIGR00960         1 MIRFEQVSKAYPGG-HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPT-RGKIRFNGQDLTRLRGR----E   74 (216)
T ss_pred             CeEEEEEEEEecCC-CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCEehhhcChh----H
Confidence            48999999999641 136999999999999999999999999999999999998876 89999888653210000    0


Q ss_pred             cccccccccccccccCc-ccccccccHHH-HhhcC--CCC----cHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHH
Q 022663           93 LSYLGGSWSKTVGSAGE-IPLQGDFSAEH-MIFGV--EGS----DPVRRERLIELLDID--LQWRMHKVSDGQRRRVQIC  162 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~--~~~----~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lA  162 (294)
                      .    ..++..++++++ ..++...+..+ +.+..  ...    ..+++.++++.+++.  .++++.+|||||||||+||
T Consensus        75 ~----~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la  150 (216)
T TIGR00960        75 I----PFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIA  150 (216)
T ss_pred             H----HHHHHhceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHH
Confidence            0    001122333333 22333344433 32221  111    123456788888885  5788999999999999999


Q ss_pred             HHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeE
Q 022663          163 MGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL  229 (294)
Q Consensus       163 raL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i  229 (294)
                      |||+.+|++|||||||+|||+.++..+.++|.++++ .|.|||+||||++++..+||++++|++|++
T Consensus       151 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~vsH~~~~~~~~~d~i~~l~~G~i  216 (216)
T TIGR00960       151 RAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNR-RGTTVLVATHDINLVETYRHRTLTLSRGRL  216 (216)
T ss_pred             HHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence            999999999999999999999999999999998865 489999999999999999999999999974

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=100.00  E-value=1.4e-46  Score=330.92  Aligned_cols=212  Identities=23%  Similarity=0.312  Sum_probs=165.6

Q ss_pred             EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCc
Q 022663           14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL   93 (294)
Q Consensus        14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~   93 (294)
                      |+++|++++|++   +++|+++||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|.+.........    
T Consensus         1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~-~G~i~~~g~~~~~~~~~~~----   72 (236)
T cd03219           1 LEVRGLTKRFGG---LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPT-SGSVLFDGEDITGLPPHEI----   72 (236)
T ss_pred             CeeeeeEEEECC---EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCC-CceEEECCEECCCCCHHHH----
Confidence            468999999975   46999999999999999999999999999999999998876 8999888764321100000    


Q ss_pred             ccccccccccccccCc-ccccccccHHHH-hhcC--C-CC-------------cHHHHHHHHHHcCCC--cccccccCCH
Q 022663           94 SYLGGSWSKTVGSAGE-IPLQGDFSAEHM-IFGV--E-GS-------------DPVRRERLIELLDID--LQWRMHKVSD  153 (294)
Q Consensus        94 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~--~-~~-------------~~~~~~~~l~~l~l~--~~~~~~~LSg  153 (294)
                            .+..++++++ ..+++.++..+. .+..  . ..             ......++++.+++.  .++++.+|||
T Consensus        73 ------~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSg  146 (236)
T cd03219          73 ------ARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSY  146 (236)
T ss_pred             ------HhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCH
Confidence                  0111233322 223344444333 2211  0 00             122356778888885  4788999999


Q ss_pred             HHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecc
Q 022663          154 GQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAE  233 (294)
Q Consensus       154 GqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g  233 (294)
                      ||||||+|||||+.+|++|||||||+|||+.++..++++|.++++ .|.|||++|||++++..+||++++|++|+++..+
T Consensus       147 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~  225 (236)
T cd03219         147 GQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRE-RGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEG  225 (236)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeec
Confidence            999999999999999999999999999999999999999998865 5899999999999999999999999999999999


Q ss_pred             cHHHHHH
Q 022663          234 KLAELDE  240 (294)
Q Consensus       234 ~~~~~~~  240 (294)
                      +++++..
T Consensus       226 ~~~~~~~  232 (236)
T cd03219         226 TPDEVRN  232 (236)
T ss_pred             CHHHhcc
Confidence            8887643

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=100.00  E-value=3e-46  Score=329.09  Aligned_cols=212  Identities=26%  Similarity=0.449  Sum_probs=166.3

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      +|+++|++++|++   +++|+++||+|.+||+++|+||||||||||+++|+|+++|+ +|.+.++|.+......      
T Consensus         1 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~-~G~i~~~g~~i~~~~~------   70 (236)
T TIGR03864         1 ALEVAGLSFAYGA---RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQ-EGQISVAGHDLRRAPR------   70 (236)
T ss_pred             CEEEEeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC-ceEEEECCEEcccCCh------
Confidence            4889999999975   57999999999999999999999999999999999998876 8999888764321100      


Q ss_pred             cccccccccccccccCc-ccccccccHHHHh-hc--CCCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHHH
Q 022663           93 LSYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-FG--VEGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQIC  162 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~--~~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lA  162 (294)
                            .....++++++ ..++...+..+.+ +.  .....    .....++++.+++.  .++++.+|||||+||++||
T Consensus        71 ------~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la  144 (236)
T TIGR03864        71 ------AALARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIA  144 (236)
T ss_pred             ------hhhhhEEEeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHH
Confidence                  00012233332 1222333433322 21  11111    22345678888875  5788999999999999999


Q ss_pred             HHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHHh
Q 022663          163 MGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDEL  241 (294)
Q Consensus       163 raL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  241 (294)
                      |||+.+|++|||||||+|||+.++..+.+.|.+++++.|.|||++|||++++.. ||++++|++|+++..++++++...
T Consensus       145 ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~  222 (236)
T TIGR03864       145 RALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEA-DDRLVVLHRGRVLADGAAAELRGA  222 (236)
T ss_pred             HHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhh-CCEEEEEeCCeEEEeCCHHHHHHH
Confidence            999999999999999999999999999999999875568999999999999975 999999999999999998887654

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.7e-46  Score=334.85  Aligned_cols=215  Identities=24%  Similarity=0.345  Sum_probs=169.2

Q ss_pred             cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663           11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS   90 (294)
Q Consensus        11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~   90 (294)
                      .++|+++||+++|++   +.+|+|+||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|.+.......   
T Consensus         9 ~~~l~i~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~-~G~i~~~g~~~~~~~~~---   81 (265)
T PRK10575          9 DTTFALRNVSFRVPG---RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPS-EGEILLDAQPLESWSSK---   81 (265)
T ss_pred             CceEEEeeEEEEECC---EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC-CCEEEECCEehhhCCHH---
Confidence            457999999999975   47999999999999999999999999999999999998776 89999888653211000   


Q ss_pred             CCcccccccccccccccCc-ccccccccHHH-HhhcCC---C----C---cHHHHHHHHHHcCCC--cccccccCCHHHH
Q 022663           91 GDLSYLGGSWSKTVGSAGE-IPLQGDFSAEH-MIFGVE---G----S---DPVRRERLIELLDID--LQWRMHKVSDGQR  156 (294)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~---~----~---~~~~~~~~l~~l~l~--~~~~~~~LSgGqk  156 (294)
                              .++..++++++ ..++..++..+ +.+...   .    .   ...+...+++.+++.  .++++.+||||||
T Consensus        82 --------~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~  153 (265)
T PRK10575         82 --------AFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGER  153 (265)
T ss_pred             --------HHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHH
Confidence                    01112223222 12233334333 222210   0    0   123456778888884  5788999999999


Q ss_pred             HHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHH
Q 022663          157 RRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLA  236 (294)
Q Consensus       157 qRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~  236 (294)
                      |||+|||||+.+|++|||||||+|||+.++..+.++|.+++++.|.|||++|||++++.++||+|++|++|+++..++.+
T Consensus       154 qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~  233 (265)
T PRK10575        154 QRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPA  233 (265)
T ss_pred             HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHH
Confidence            99999999999999999999999999999999999999987656899999999999999999999999999999999888


Q ss_pred             HHHH
Q 022663          237 ELDE  240 (294)
Q Consensus       237 ~~~~  240 (294)
                      ++.+
T Consensus       234 ~~~~  237 (265)
T PRK10575        234 ELMR  237 (265)
T ss_pred             HhcC
Confidence            7654

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.3e-46  Score=343.16  Aligned_cols=223  Identities=15%  Similarity=0.165  Sum_probs=173.2

Q ss_pred             cccEEEcceEEEcCCCC-------CCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccc
Q 022663           11 LNSIKVCGMQFSYEGND-------KPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFH   83 (294)
Q Consensus        11 ~~~l~~~~ls~~y~~~~-------~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~   83 (294)
                      .++|+++||++.|+...       ...+|+||||+|.+||++||+|+||||||||+++|+|++.+. +|.+.++|.+...
T Consensus         3 ~~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~-~G~i~~~g~~l~~   81 (327)
T PRK11308          3 QPLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPT-GGELYYQGQDLLK   81 (327)
T ss_pred             CceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCC-CcEEEECCEEcCc
Confidence            35799999999996311       146899999999999999999999999999999999998876 8999998875432


Q ss_pred             cccccccCCcccccccccccccccCcc---cccccccHHHHh-h---cCCC-C---cHHHHHHHHHHcCCC---cccccc
Q 022663           84 DTQLVCSGDLSYLGGSWSKTVGSAGEI---PLQGDFSAEHMI-F---GVEG-S---DPVRRERLIELLDID---LQWRMH  149 (294)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~---~~~~-~---~~~~~~~~l~~l~l~---~~~~~~  149 (294)
                      .....    .    ..++..++++++.   .+.+.++..+.+ .   .... .   ..+++.++++.+++.   .+++++
T Consensus        82 ~~~~~----~----~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~  153 (327)
T PRK11308         82 ADPEA----Q----KLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPH  153 (327)
T ss_pred             CCHHH----H----HHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCc
Confidence            11000    0    0011123333332   123333332221 1   0011 1   123456788888884   478999


Q ss_pred             cCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeE
Q 022663          150 KVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL  229 (294)
Q Consensus       150 ~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i  229 (294)
                      +|||||+|||+|||||+.+|++||+||||++||+.++.+++++|.++.++.|.|||+||||+.++.++||+|++|++|++
T Consensus       154 ~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~i  233 (327)
T PRK11308        154 MFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRC  233 (327)
T ss_pred             cCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence            99999999999999999999999999999999999999999999998877799999999999999999999999999999


Q ss_pred             EecccHHHHHHhh
Q 022663          230 RRAEKLAELDELR  242 (294)
Q Consensus       230 ~~~g~~~~~~~~~  242 (294)
                      ++.|+.+++.+..
T Consensus       234 ve~g~~~~~~~~p  246 (327)
T PRK11308        234 VEKGTKEQIFNNP  246 (327)
T ss_pred             EEECCHHHHhcCC
Confidence            9999999987653

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3e-46  Score=338.63  Aligned_cols=220  Identities=26%  Similarity=0.344  Sum_probs=170.6

Q ss_pred             cEEEcceEEEcCCCC--CCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663           13 SIKVCGMQFSYEGND--KPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS   90 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~--~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~   90 (294)
                      .|+++||+++|++..  ..++|+||||+|++||+++|+||||||||||+|+|+|++.|+ +|.+.++|.+.......   
T Consensus         2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~i~~~~~~---   77 (290)
T PRK13634          2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPT-SGTVTIGERVITAGKKN---   77 (290)
T ss_pred             EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC-CcEEEECCEECcccccc---
Confidence            389999999996421  136999999999999999999999999999999999998886 89999988754210000   


Q ss_pred             CCcccccccccccccccCcc---cccccccH-HHHhhcCC--CCc----HHHHHHHHHHcCCC---cccccccCCHHHHH
Q 022663           91 GDLSYLGGSWSKTVGSAGEI---PLQGDFSA-EHMIFGVE--GSD----PVRRERLIELLDID---LQWRMHKVSDGQRR  157 (294)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~--~~~----~~~~~~~l~~l~l~---~~~~~~~LSgGqkq  157 (294)
                      ..    ....+..++++++.   .++. .+. +++.++..  ...    .+++.++++.+++.   .++++.+|||||||
T Consensus        78 ~~----~~~~~~~ig~v~q~~~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~q  152 (290)
T PRK13634         78 KK----LKPLRKKVGIVFQFPEHQLFE-ETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMR  152 (290)
T ss_pred             ch----HHHHHhhEEEEeeCchhhhhh-hhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHH
Confidence            00    00011223333332   1222 233 33333211  111    13456788889984   47889999999999


Q ss_pred             HHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHH
Q 022663          158 RVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAE  237 (294)
Q Consensus       158 Rv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~  237 (294)
                      ||+|||||+.+|++|||||||+|||+.++..++++|.++.++.|.|||++|||++++..+||||++|++|+++..|++++
T Consensus       153 rv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~  232 (290)
T PRK13634        153 RVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPRE  232 (290)
T ss_pred             HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence            99999999999999999999999999999999999999876668999999999999999999999999999999999888


Q ss_pred             HHHh
Q 022663          238 LDEL  241 (294)
Q Consensus       238 ~~~~  241 (294)
                      +++.
T Consensus       233 ~~~~  236 (290)
T PRK13634        233 IFAD  236 (290)
T ss_pred             HhcC
Confidence            7643

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=1.2e-47  Score=318.76  Aligned_cols=219  Identities=21%  Similarity=0.264  Sum_probs=181.3

Q ss_pred             cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663           11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS   90 (294)
Q Consensus        11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~   90 (294)
                      +++|.++||.|+|++   ++++++|||+|++||++||+|||||||||.|.+++|++.|+ +|.+.+++.+....+..   
T Consensus         2 ~~~L~a~~l~K~y~k---r~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d-~G~i~ld~~diT~lPm~---   74 (243)
T COG1137           2 MSTLVAENLAKSYKK---RKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPD-SGKILLDDEDITKLPMH---   74 (243)
T ss_pred             CcEEEehhhhHhhCC---eeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecC-CceEEECCcccccCChH---
Confidence            357999999999976   67999999999999999999999999999999999999997 99999988875432110   


Q ss_pred             CCcccccccccccccccCc-ccccccccHHHHhhcC---CCCc------HHHHHHHHHHcCCC--cccccccCCHHHHHH
Q 022663           91 GDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMIFGV---EGSD------PVRRERLIELLDID--LQWRMHKVSDGQRRR  158 (294)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~------~~~~~~~l~~l~l~--~~~~~~~LSgGqkqR  158 (294)
                             ..-+..++|.+| ...|..+++++++...   ...+      +.+.+.+++.|.+.  .+.+..+||||||+|
T Consensus        75 -------~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR  147 (243)
T COG1137          75 -------KRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRR  147 (243)
T ss_pred             -------HHhhcCcccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHH
Confidence                   001223455554 5567778877654321   1111      12345788889886  577888999999999


Q ss_pred             HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663          159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL  238 (294)
Q Consensus       159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~  238 (294)
                      +.|||||+.+|+++||||||+|.||.+..+|.+++..+. +.|..|+++.|+..+...+|||.+++.+|++..+|+++++
T Consensus       148 ~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~-~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei  226 (243)
T COG1137         148 VEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLK-DRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEI  226 (243)
T ss_pred             HHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHH-hCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHH
Confidence            999999999999999999999999999999999998875 5699999999999999999999999999999999999999


Q ss_pred             HHhhhh
Q 022663          239 DELRNS  244 (294)
Q Consensus       239 ~~~~~~  244 (294)
                      .+++..
T Consensus       227 ~~n~~V  232 (243)
T COG1137         227 VNNEDV  232 (243)
T ss_pred             hcChhh
Confidence            877543

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.8e-46  Score=336.27  Aligned_cols=211  Identities=27%  Similarity=0.348  Sum_probs=166.4

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      +|+++|++++|++  ..++|+|+||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|.+.......     
T Consensus         4 ~l~~~~l~~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~~~~-----   75 (274)
T PRK13647          4 IIEVEDLHFRYKD--GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ-RGRVKVMGREVNAENEK-----   75 (274)
T ss_pred             eEEEEEEEEEeCC--CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC-ceEEEECCEECCCCCHH-----
Confidence            7999999999963  246999999999999999999999999999999999998886 89999988653211000     


Q ss_pred             cccccccccccccccCccc--ccccccH-HHHhhcCC--CCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHH
Q 022663           93 LSYLGGSWSKTVGSAGEIP--LQGDFSA-EHMIFGVE--GSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQI  161 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~--~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~l  161 (294)
                            .....++++++.+  .+...+. +++.++..  ...    ..++.++++.+++.  .++++.+|||||||||+|
T Consensus        76 ------~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~l  149 (274)
T PRK13647         76 ------WVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAI  149 (274)
T ss_pred             ------HHHhhEEEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHH
Confidence                  0111233333321  1112233 33333211  111    23456778888885  578899999999999999


Q ss_pred             HHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663          162 CMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL  238 (294)
Q Consensus       162 AraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~  238 (294)
                      ||||+.+|++|||||||++||+.++.+++++|.+++++ |.|||++|||++++.++||+|++|++|++++.|+++++
T Consensus       150 araL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  225 (274)
T PRK13647        150 AGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQ-GKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL  225 (274)
T ss_pred             HHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence            99999999999999999999999999999999998654 89999999999999999999999999999999998654

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=100.00  E-value=1.8e-46  Score=325.30  Aligned_cols=204  Identities=25%  Similarity=0.361  Sum_probs=160.0

Q ss_pred             EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCc
Q 022663           14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL   93 (294)
Q Consensus        14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~   93 (294)
                      |+++|++++|++   +++|+|+||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|.+......  ....+
T Consensus         1 i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~-~G~v~~~g~~~~~~~~--~~~~i   74 (213)
T cd03301           1 VELENVTKRFGN---VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPT-SGRIYIGGRDVTDLPP--KDRDI   74 (213)
T ss_pred             CEEEeeEEEECC---eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCEECCcCCc--ccceE
Confidence            478999999975   47999999999999999999999999999999999998776 8999888865321100  00112


Q ss_pred             ccccccccccccccCcccccccccHHH-HhhcC--CCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHH
Q 022663           94 SYLGGSWSKTVGSAGEIPLQGDFSAEH-MIFGV--EGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMG  164 (294)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAra  164 (294)
                      .+.++.          ..++...+..+ +.+..  ....    .+++.++++.+++.  .++++.+||||||||++||||
T Consensus        75 ~~~~q~----------~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~lara  144 (213)
T cd03301          75 AMVFQN----------YALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRA  144 (213)
T ss_pred             EEEecC----------hhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHH
Confidence            222211          12233334333 22211  1111    22345678888885  578899999999999999999


Q ss_pred             HccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecc
Q 022663          165 LLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAE  233 (294)
Q Consensus       165 L~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g  233 (294)
                      |+.+|++|||||||+|||+.++..++++|.+++++.|.|||++|||++++..+||++++|++|++++.|
T Consensus       145 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g  213 (213)
T cd03301         145 IVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG  213 (213)
T ss_pred             HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence            999999999999999999999999999999987656899999999999999999999999999998764

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=100.00  E-value=4.7e-46  Score=330.37  Aligned_cols=221  Identities=23%  Similarity=0.266  Sum_probs=168.4

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      +|+++||+++|++   +++|+|+||+|++|++++|+||||||||||+++|+|++.|+ .|.+.++|.+.......  ...
T Consensus         3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~--~~~   76 (250)
T PRK11264          3 AIEVKNLVKKFHG---QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPE-AGTIRVGDITIDTARSL--SQQ   76 (250)
T ss_pred             cEEEeceEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CeEEEECCEEccccccc--cch
Confidence            7999999999975   46999999999999999999999999999999999998776 89998887653210000  000


Q ss_pred             cccccccccccccccCc-ccccccccHHH-Hhhc---CCCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHH
Q 022663           93 LSYLGGSWSKTVGSAGE-IPLQGDFSAEH-MIFG---VEGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQI  161 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~---~~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~l  161 (294)
                      . .....++..++++++ ..+++..+..+ +.+.   .....    ...+.++++.+++.  .++++.+|||||||||+|
T Consensus        77 ~-~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~l  155 (250)
T PRK11264         77 K-GLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAI  155 (250)
T ss_pred             h-hHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHH
Confidence            0 000011122333333 22333334333 3221   11111    22345678888885  477899999999999999


Q ss_pred             HHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHHh
Q 022663          162 CMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDEL  241 (294)
Q Consensus       162 AraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  241 (294)
                      ||||+.+|++|||||||+|||+.++..+.++|.++.+ .|.|||++|||++++..+||++++|++|+++..++++++.+.
T Consensus       156 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~  234 (250)
T PRK11264        156 ARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQ-EKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFAD  234 (250)
T ss_pred             HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhcC
Confidence            9999999999999999999999999999999998865 489999999999999999999999999999999999887653

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=100.00  E-value=2.1e-46  Score=326.68  Aligned_cols=206  Identities=27%  Similarity=0.336  Sum_probs=161.3

Q ss_pred             EEEcceEEEcCCCC-CCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           14 IKVCGMQFSYEGND-KPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        14 l~~~~ls~~y~~~~-~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      |+++|++++|++.. .+++|+++||+|++|++++|+||||||||||+|+|+|++.|+ +|.+.++|.+...     ....
T Consensus         1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~-~G~i~~~g~~~~~-----~~~~   74 (220)
T cd03293           1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPT-SGEVLVDGEPVTG-----PGPD   74 (220)
T ss_pred             CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCEECcc-----ccCc
Confidence            47899999996411 146999999999999999999999999999999999998876 8999888764321     0112


Q ss_pred             cccccccccccccccCcccccccccHHHH-hhcC--CCC----cHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHH
Q 022663           93 LSYLGGSWSKTVGSAGEIPLQGDFSAEHM-IFGV--EGS----DPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICM  163 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~----~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAr  163 (294)
                      +.++++.          ..++...+..++ .+..  ...    ..+.+.++++.+++.  .++++.+||||||||++|||
T Consensus        75 i~~v~q~----------~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~  144 (220)
T cd03293          75 RGYVFQQ----------DALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALAR  144 (220)
T ss_pred             EEEEecc----------cccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHH
Confidence            2332221          123333343332 2211  111    123456788888885  47789999999999999999


Q ss_pred             HHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEee--CCeEEecccH
Q 022663          164 GLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQ--DGELRRAEKL  235 (294)
Q Consensus       164 aL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~--~G~i~~~g~~  235 (294)
                      ||+.+|++|||||||+|||+.++..++++|.++.++.+.|||++|||++++..+||++++|+  +|++++.++.
T Consensus       145 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~  218 (220)
T cd03293         145 ALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV  218 (220)
T ss_pred             HHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence            99999999999999999999999999999998866668999999999999999999999999  7999887664

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=100.00  E-value=3.5e-46  Score=322.45  Aligned_cols=202  Identities=21%  Similarity=0.328  Sum_probs=162.0

Q ss_pred             EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCc
Q 022663           14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL   93 (294)
Q Consensus        14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~   93 (294)
                      |+++|++++|++   +++|+++||+|++|++++|+||||||||||+++|+|++.|+ +|.+.++|.+....  .      
T Consensus         1 l~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~-~G~i~~~g~~~~~~--~------   68 (208)
T cd03268           1 LKTNDLTKTYGK---KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPD-SGEITFDGKSYQKN--I------   68 (208)
T ss_pred             CEEEEEEEEECC---eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC-ceEEEECCCcccch--H------
Confidence            478999999964   57999999999999999999999999999999999998876 89999888753211  0      


Q ss_pred             ccccccccccccccCc-ccccccccHHHHh-hcC--CCCcHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHHHcc
Q 022663           94 SYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-FGV--EGSDPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMGLLH  167 (294)
Q Consensus        94 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~--~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL~~  167 (294)
                           .....++++++ ..+++..+..+++ +..  ......+..++++.+++.  .++++.+|||||||||+|||||+.
T Consensus        69 -----~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~  143 (208)
T cd03268          69 -----EALRRIGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLG  143 (208)
T ss_pred             -----HHHhhEEEecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhc
Confidence                 01112333333 2233344444432 211  112344567788888885  578899999999999999999999


Q ss_pred             CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecc
Q 022663          168 PFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAE  233 (294)
Q Consensus       168 ~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g  233 (294)
                      +|++|||||||+|||+.++..++++|.++++ .|.|||++|||++++..+||++++|++|+++..|
T Consensus       144 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g  208 (208)
T cd03268         144 NPDLLILDEPTNGLDPDGIKELRELILSLRD-QGITVLISSHLLSEIQKVADRIGIINKGKLIEEG  208 (208)
T ss_pred             CCCEEEECCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence            9999999999999999999999999998865 5899999999999999999999999999987654

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.6e-46  Score=336.36  Aligned_cols=217  Identities=22%  Similarity=0.337  Sum_probs=170.2

Q ss_pred             ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663           12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG   91 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~   91 (294)
                      ++|+++||+++|++...+++|+|+||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|.+.......    
T Consensus         3 ~~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~i~~~~~~----   77 (279)
T PRK13650          3 NIIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAE-SGQIIIDGDLLTEENVW----   77 (279)
T ss_pred             ceEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CcEEEECCEECCcCcHH----
Confidence            3799999999996421245999999999999999999999999999999999998886 89999888654211000    


Q ss_pred             CcccccccccccccccCccc--ccccccHH-HHhhcCC--CCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHH
Q 022663           92 DLSYLGGSWSKTVGSAGEIP--LQGDFSAE-HMIFGVE--GSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQ  160 (294)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~--~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~  160 (294)
                             ..+..++++++.+  .+...+.. ++.++..  ...    .++..++++.+++.  .++.+.+|||||+||++
T Consensus        78 -------~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~  150 (279)
T PRK13650         78 -------DIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVA  150 (279)
T ss_pred             -------HHHhhceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHH
Confidence                   0112233333321  22233433 3333211  111    23456788888885  57889999999999999


Q ss_pred             HHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHH
Q 022663          161 ICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDE  240 (294)
Q Consensus       161 lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  240 (294)
                      |||||+.+|++|||||||+|||+.++..++++|.+++++.|.|||++|||++++. +||+|++|++|+++..|+++++..
T Consensus       151 lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~-~~dri~~l~~G~i~~~g~~~~~~~  229 (279)
T PRK13650        151 IAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVA-LSDRVLVMKNGQVESTSTPRELFS  229 (279)
T ss_pred             HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEEEEECCHHHHHc
Confidence            9999999999999999999999999999999999987666899999999999985 799999999999999999988765


Q ss_pred             h
Q 022663          241 L  241 (294)
Q Consensus       241 ~  241 (294)
                      .
T Consensus       230 ~  230 (279)
T PRK13650        230 R  230 (279)
T ss_pred             C
Confidence            4

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.6e-46  Score=337.83  Aligned_cols=219  Identities=26%  Similarity=0.356  Sum_probs=169.3

Q ss_pred             cEEEcceEEEcCCCC--CCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663           13 SIKVCGMQFSYEGND--KPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS   90 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~--~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~   90 (294)
                      ||+++||+++|+...  .+.+|+|+||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|.+.......   
T Consensus         1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~i~~~~~~---   76 (288)
T PRK13643          1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPT-EGKVTVGDIVVSSTSKQ---   76 (288)
T ss_pred             CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC-CcEEEECCEECcccccc---
Confidence            589999999996321  125999999999999999999999999999999999998886 89999988754210000   


Q ss_pred             CCcccccccccccccccCcc---cccccccHHHHhhcCC--CCc----HHHHHHHHHHcCCC---cccccccCCHHHHHH
Q 022663           91 GDLSYLGGSWSKTVGSAGEI---PLQGDFSAEHMIFGVE--GSD----PVRRERLIELLDID---LQWRMHKVSDGQRRR  158 (294)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~--~~~----~~~~~~~l~~l~l~---~~~~~~~LSgGqkqR  158 (294)
                          .....++..++++++.   .++.....+++.++..  ...    ..++.++++.+++.   .++.+.+||||||||
T Consensus        77 ----~~~~~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqr  152 (288)
T PRK13643         77 ----KEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRR  152 (288)
T ss_pred             ----ccHHHHHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHH
Confidence                0000112233333332   2233222334333321  111    22456778888883   378899999999999


Q ss_pred             HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663          159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL  238 (294)
Q Consensus       159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~  238 (294)
                      ++|||||+.+|++|||||||+|||+.++..+.++|.++.+ .|.|||++|||++++..+||||++|++|+++..|+++++
T Consensus       153 vaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~-~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~  231 (288)
T PRK13643        153 VAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQ-SGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDV  231 (288)
T ss_pred             HHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence            9999999999999999999999999999999999998865 489999999999999999999999999999999999987


Q ss_pred             HH
Q 022663          239 DE  240 (294)
Q Consensus       239 ~~  240 (294)
                      +.
T Consensus       232 ~~  233 (288)
T PRK13643        232 FQ  233 (288)
T ss_pred             Hc
Confidence            65

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=5.6e-46  Score=316.22  Aligned_cols=217  Identities=20%  Similarity=0.182  Sum_probs=178.5

Q ss_pred             ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663           12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG   91 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~   91 (294)
                      +||+++||+..|+.   ..+|++|||++++||+++|+|+||+|||||||+|+|++++. +|.|.+.|.+.......    
T Consensus         2 ~mL~v~~l~~~YG~---~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~-~G~I~~~G~dit~~p~~----   73 (237)
T COG0410           2 PMLEVENLSAGYGK---IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPR-SGRIIFDGEDITGLPPH----   73 (237)
T ss_pred             CceeEEeEeecccc---eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CeeEEECCeecCCCCHH----
Confidence            58999999999986   57999999999999999999999999999999999998876 89999999876432110    


Q ss_pred             CcccccccccccccccCc-ccccccccHHHHhh-cCCC-C---cHH-HHHHHHHHcCC-C--cccccccCCHHHHHHHHH
Q 022663           92 DLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMIF-GVEG-S---DPV-RRERLIELLDI-D--LQWRMHKVSDGQRRRVQI  161 (294)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~-~---~~~-~~~~~l~~l~l-~--~~~~~~~LSgGqkqRv~l  161 (294)
                            ...+..++++++ -.+|+.+|+++++. +... .   ... ..+++.+.|-. .  .+++.++|||||||.++|
T Consensus        74 ------~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAi  147 (237)
T COG0410          74 ------ERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAI  147 (237)
T ss_pred             ------HHHhCCeEeCcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHH
Confidence                  001223444554 34677888776653 2211 1   111 14556666653 2  577899999999999999


Q ss_pred             HHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHHh
Q 022663          162 CMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDEL  241 (294)
Q Consensus       162 AraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  241 (294)
                      ||||+.+|++|+|||||.||-|.-.++|.+.|+++.++.|.||++|.++..++.+++||.++|++|+|+..|+.+++...
T Consensus       148 aRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~  227 (237)
T COG0410         148 ARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLAD  227 (237)
T ss_pred             HHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcC
Confidence            99999999999999999999999999999999999877688999999999999999999999999999999999998766


Q ss_pred             h
Q 022663          242 R  242 (294)
Q Consensus       242 ~  242 (294)
                      +
T Consensus       228 ~  228 (237)
T COG0410         228 P  228 (237)
T ss_pred             H
Confidence            4

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=100.00  E-value=5e-46  Score=328.37  Aligned_cols=215  Identities=23%  Similarity=0.310  Sum_probs=167.8

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      ||+++|++++|++   +++|+|+||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|.+......     .
T Consensus         1 ~l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~~~~-----~   71 (240)
T PRK09493          1 MIEFKNVSKHFGP---TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEIT-SGDLIVDGLKVNDPKV-----D   71 (240)
T ss_pred             CEEEEeEEEEECC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCEECCcCCh-----h
Confidence            4889999999975   57999999999999999999999999999999999998776 8999988865321000     0


Q ss_pred             cccccccccccccccCc-ccccccccHHH-HhhcC---CCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHH
Q 022663           93 LSYLGGSWSKTVGSAGE-IPLQGDFSAEH-MIFGV---EGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQI  161 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~---~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~l  161 (294)
                          ...++..++++++ ..++...+..+ +.+..   ....    ...+.++++.+++.  .++++.+||||||||++|
T Consensus        72 ----~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~l  147 (240)
T PRK09493         72 ----ERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAI  147 (240)
T ss_pred             ----HHHHhhceEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHH
Confidence                0001112333332 22333334333 22211   1111    22346778888885  478899999999999999


Q ss_pred             HHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHHh
Q 022663          162 CMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDEL  241 (294)
Q Consensus       162 AraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  241 (294)
                      ||||+.+|++|||||||+|||+.++..+.++|.++++ .++|||++|||++++..+||++++|++|+++..|+++++.+.
T Consensus       148 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  226 (240)
T PRK09493        148 ARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAE-EGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN  226 (240)
T ss_pred             HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcC
Confidence            9999999999999999999999999999999998864 489999999999999999999999999999999998887653

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5e-46  Score=333.12  Aligned_cols=215  Identities=21%  Similarity=0.319  Sum_probs=169.0

Q ss_pred             cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663           11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS   90 (294)
Q Consensus        11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~   90 (294)
                      ..+|+++||+++|++   +.+|+++||+|.+||+++|+||||||||||+++|+|++.|+ .|.+.++|.+........  
T Consensus         5 ~~~l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~-~G~i~~~g~~~~~~~~~~--   78 (265)
T PRK10253          5 VARLRGEQLTLGYGK---YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPA-HGHVWLDGEHIQHYASKE--   78 (265)
T ss_pred             ccEEEEEEEEEEECC---EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC-CcEEEECCEEhhhCCHHH--
Confidence            457999999999975   46999999999999999999999999999999999998776 889988886432110000  


Q ss_pred             CCcccccccccccccccCc-ccccccccHHHHh-hcC-C------CC---cHHHHHHHHHHcCCC--cccccccCCHHHH
Q 022663           91 GDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-FGV-E------GS---DPVRRERLIELLDID--LQWRMHKVSDGQR  156 (294)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~-~------~~---~~~~~~~~l~~l~l~--~~~~~~~LSgGqk  156 (294)
                               ....++++++ ..++...+..+++ +.. .      ..   ......++++.+++.  .++++.+||||||
T Consensus        79 ---------~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~  149 (265)
T PRK10253         79 ---------VARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQR  149 (265)
T ss_pred             ---------HhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHH
Confidence                     0112223322 1222333433322 211 0      00   122456778888885  5788999999999


Q ss_pred             HHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHH
Q 022663          157 RRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLA  236 (294)
Q Consensus       157 qRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~  236 (294)
                      ||++|||||+.+|++|||||||+|||+.++..+.++|.++.++.|.|||++|||++++.++||++++|++|+++..|+++
T Consensus       150 qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~  229 (265)
T PRK10253        150 QRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPK  229 (265)
T ss_pred             HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence            99999999999999999999999999999999999999987656899999999999999999999999999999999988


Q ss_pred             HHHH
Q 022663          237 ELDE  240 (294)
Q Consensus       237 ~~~~  240 (294)
                      ++..
T Consensus       230 ~~~~  233 (265)
T PRK10253        230 EIVT  233 (265)
T ss_pred             HHhh
Confidence            7654

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=100.00  E-value=2.3e-46  Score=325.78  Aligned_cols=207  Identities=26%  Similarity=0.378  Sum_probs=162.0

Q ss_pred             cEEEcceEEEcCCCCC-CCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663           13 SIKVCGMQFSYEGNDK-PPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG   91 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~-~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~   91 (294)
                      ||+++|++++|++... .++|+++||+|++||+++|+||||||||||+++|+|+++|+ +|.+.++|.+.....      
T Consensus         1 ~l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~-~G~i~~~g~~~~~~~------   73 (218)
T cd03266           1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD-AGFATVDGFDVVKEP------   73 (218)
T ss_pred             CeEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC-CceEEECCEEcccCH------
Confidence            4889999999975110 16999999999999999999999999999999999998876 899988886532100      


Q ss_pred             CcccccccccccccccCc-ccccccccHHHHh-hc--CCCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHH
Q 022663           92 DLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-FG--VEGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQI  161 (294)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~--~~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~l  161 (294)
                            ..++..++++++ ..++...+..+++ +.  .....    ..++.++++.+++.  .++++.+||||||||++|
T Consensus        74 ------~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~l  147 (218)
T cd03266          74 ------AEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAI  147 (218)
T ss_pred             ------HHHHhhEEEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHH
Confidence                  011222333333 2234444443332 21  11111    23456788888885  578899999999999999


Q ss_pred             HHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecc
Q 022663          162 CMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAE  233 (294)
Q Consensus       162 AraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g  233 (294)
                      ||||+.+|++|||||||++||+.++..+.++|.++++ .|.|||+||||++++..+||++++|++|+++..|
T Consensus       148 aral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~  218 (218)
T cd03266         148 ARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRA-LGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG  218 (218)
T ss_pred             HHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence            9999999999999999999999999999999998864 5899999999999999999999999999997653

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=100.00  E-value=2.6e-46  Score=340.75  Aligned_cols=211  Identities=27%  Similarity=0.408  Sum_probs=171.5

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      +++++|++++|++   +.+|+|+||+|++||++||+||||||||||+|+|+|++.|+ +|.+.++|.+..... .     
T Consensus         2 ~l~~~~l~~~~~~---~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~-~G~i~i~g~~~~~~~-~-----   71 (301)
T TIGR03522         2 SIRVSSLTKLYGT---QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPD-SGSVQVCGEDVLQNP-K-----   71 (301)
T ss_pred             EEEEEEEEEEECC---EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCEEcccCh-H-----
Confidence            5899999999975   57999999999999999999999999999999999998886 899999886542210 0     


Q ss_pred             cccccccccccccccCc-ccccccccHHHHh-hc--CCCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHHH
Q 022663           93 LSYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-FG--VEGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQIC  162 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~--~~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lA  162 (294)
                            ..+..++++++ ..+++.++..+++ +.  .....    .++.+++++.+++.  .++++..|||||||||+||
T Consensus        72 ------~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la  145 (301)
T TIGR03522        72 ------EVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLA  145 (301)
T ss_pred             ------HHHhceEEecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHH
Confidence                  11223344443 2344555554433 21  11111    23457788889986  5788999999999999999


Q ss_pred             HHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHHh
Q 022663          163 MGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDEL  241 (294)
Q Consensus       163 raL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  241 (294)
                      |||+.+|++|||||||+|||+.++..+++.|.++. + ++|||++||+++++.++||||++|++|+++..|+++++...
T Consensus       146 ~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~-~-~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  222 (301)
T TIGR03522       146 QALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIG-K-DKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA  222 (301)
T ss_pred             HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence            99999999999999999999999999999999874 3 79999999999999999999999999999999999988653

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=6e-46  Score=334.65  Aligned_cols=216  Identities=25%  Similarity=0.334  Sum_probs=169.3

Q ss_pred             ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663           12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG   91 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~   91 (294)
                      .+|+++||+++|++  ...+|+|+||+|++||+++|+|+||||||||+|+|+|++.|+ +|.+.++|.+.......    
T Consensus         2 ~~l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~~~~----   74 (277)
T PRK13652          2 HLIETRDLCYSYSG--SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPT-SGSVLIRGEPITKENIR----   74 (277)
T ss_pred             ceEEEEEEEEEeCC--CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC-ceEEEECCEECCcCCHH----
Confidence            47999999999963  246999999999999999999999999999999999998886 89999888653211000    


Q ss_pred             CcccccccccccccccCccc--ccccccHH-HHhhcC--CCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHH
Q 022663           92 DLSYLGGSWSKTVGSAGEIP--LQGDFSAE-HMIFGV--EGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQ  160 (294)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~  160 (294)
                             .....++++++.+  .....+.. ++.+..  ...+    .+...++++.+++.  .++.+.+||||||||++
T Consensus        75 -------~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~  147 (277)
T PRK13652         75 -------EVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVA  147 (277)
T ss_pred             -------HHHhheEEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHH
Confidence                   0111223332211  11122333 332211  1112    12356778888885  57889999999999999


Q ss_pred             HHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHH
Q 022663          161 ICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDE  240 (294)
Q Consensus       161 lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  240 (294)
                      |||||+.+|++|||||||+|||+.++..++++|.++.++.|.|||++|||++++.++||||++|++|+++..|+++++.+
T Consensus       148 laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  227 (277)
T PRK13652        148 IAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFL  227 (277)
T ss_pred             HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhc
Confidence            99999999999999999999999999999999999876568999999999999999999999999999999999988765


Q ss_pred             h
Q 022663          241 L  241 (294)
Q Consensus       241 ~  241 (294)
                      .
T Consensus       228 ~  228 (277)
T PRK13652        228 Q  228 (277)
T ss_pred             C
Confidence            3

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6.7e-46  Score=327.76  Aligned_cols=214  Identities=19%  Similarity=0.229  Sum_probs=167.9

Q ss_pred             ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663           12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG   91 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~   91 (294)
                      ++|+++|++++|++   +++|+|+||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|.+........   
T Consensus         2 ~~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~~---   74 (241)
T PRK10895          2 ATLTAKNLAKAYKG---RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRD-AGNIIIDDEDISLLPLHA---   74 (241)
T ss_pred             ceEEEeCcEEEeCC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEECCEECCCCCHHH---
Confidence            37999999999975   57999999999999999999999999999999999998876 899998886532110000   


Q ss_pred             CcccccccccccccccCc-ccccccccHHHH-hhcC--C-CCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHH
Q 022663           92 DLSYLGGSWSKTVGSAGE-IPLQGDFSAEHM-IFGV--E-GSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQ  160 (294)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~--~-~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~  160 (294)
                             ..+..++++++ ..++...+..++ .+..  . ...    .....++++.+++.  .++++.+|||||+|||+
T Consensus        75 -------~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~  147 (241)
T PRK10895         75 -------RARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVE  147 (241)
T ss_pred             -------HHHhCeEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHH
Confidence                   01112333333 223333444332 2211  1 111    22456778888875  47788999999999999


Q ss_pred             HHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHH
Q 022663          161 ICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDE  240 (294)
Q Consensus       161 lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  240 (294)
                      |||||+.+|++|||||||+|||+.++..+.+.|.++.+ .|.|||++|||++++..+||++++|++|+++..++++++.+
T Consensus       148 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~  226 (241)
T PRK10895        148 IARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRD-SGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ  226 (241)
T ss_pred             HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence            99999999999999999999999999999999988764 58999999999999999999999999999999999888754

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=6e-46  Score=330.61  Aligned_cols=215  Identities=16%  Similarity=0.192  Sum_probs=167.7

Q ss_pred             ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663           12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG   91 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~   91 (294)
                      ++|+++|++++|++   +++|+++||+|.+|++++|+||||||||||+++|+|+++|+ +|.+.++|.+........   
T Consensus         4 ~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~-~G~i~~~g~~~~~~~~~~---   76 (255)
T PRK11300          4 PLLSVSGLMMRFGG---LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPT-GGTILLRGQHIEGLPGHQ---   76 (255)
T ss_pred             ceEEEeeEEEEECC---EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC-cceEEECCEECCCCCHHH---
Confidence            47999999999975   57999999999999999999999999999999999998876 899998886532110000   


Q ss_pred             CcccccccccccccccCc-ccccccccHHHH-hhcC------------------CCC---cHHHHHHHHHHcCCC--ccc
Q 022663           92 DLSYLGGSWSKTVGSAGE-IPLQGDFSAEHM-IFGV------------------EGS---DPVRRERLIELLDID--LQW  146 (294)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~------------------~~~---~~~~~~~~l~~l~l~--~~~  146 (294)
                             ..+..++++++ ..++..++..++ .++.                  ...   ......++++.+++.  .++
T Consensus        77 -------~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~  149 (255)
T PRK11300         77 -------IARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANR  149 (255)
T ss_pred             -------HHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhC
Confidence                   00011222222 223333444332 2210                  000   012345667788874  578


Q ss_pred             ccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeC
Q 022663          147 RMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQD  226 (294)
Q Consensus       147 ~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~  226 (294)
                      ++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|.+++++.|.|||++||+++++..+||++++|++
T Consensus       150 ~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~  229 (255)
T PRK11300        150 QAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQ  229 (255)
T ss_pred             ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence            89999999999999999999999999999999999999999999999998765589999999999999999999999999


Q ss_pred             CeEEecccHHHHHH
Q 022663          227 GELRRAEKLAELDE  240 (294)
Q Consensus       227 G~i~~~g~~~~~~~  240 (294)
                      |+++..++++++.+
T Consensus       230 g~i~~~~~~~~~~~  243 (255)
T PRK11300        230 GTPLANGTPEEIRN  243 (255)
T ss_pred             CeEEecCCHHHHhh
Confidence            99999999887754

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6.3e-46  Score=342.06  Aligned_cols=223  Identities=16%  Similarity=0.222  Sum_probs=169.4

Q ss_pred             ccEEEcceEEEcCCC-CCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCccc---CCCceEEecCCcccccccc
Q 022663           12 NSIKVCGMQFSYEGN-DKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMV---GGRDVVQVLNRSSFHDTQL   87 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~-~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~---~~~g~i~~~~~~~~~~~~~   87 (294)
                      ++|+++||+++|+.. +...+|+||||+|.+||+++|+|+||||||||+++|+|++.+   ..+|.+.++|.+.......
T Consensus         2 ~~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~   81 (330)
T PRK15093          2 PLLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPR   81 (330)
T ss_pred             CeEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHH
Confidence            479999999999521 124699999999999999999999999999999999998763   2378999888754221100


Q ss_pred             cccCCcccccccccccccccCccc---ccccccHHH-Hhh---c--CCC----C---cHHHHHHHHHHcCCC-----ccc
Q 022663           88 VCSGDLSYLGGSWSKTVGSAGEIP---LQGDFSAEH-MIF---G--VEG----S---DPVRRERLIELLDID-----LQW  146 (294)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~---~--~~~----~---~~~~~~~~l~~l~l~-----~~~  146 (294)
                      ...       ......++++++.+   +.+.++..+ +..   .  ...    .   ...++.++++.+++.     .++
T Consensus        82 ~~~-------~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~  154 (330)
T PRK15093         82 ERR-------KLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRS  154 (330)
T ss_pred             HHH-------HHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhC
Confidence            000       00011233333211   222233222 211   1  000    0   123456788888885     367


Q ss_pred             ccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeC
Q 022663          147 RMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQD  226 (294)
Q Consensus       147 ~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~  226 (294)
                      ++.+|||||+|||+|||||+.+|++|||||||++||+.++.+++++|.++.++.|.|||+||||++++..+||+|++|++
T Consensus       155 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~  234 (330)
T PRK15093        155 FPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYC  234 (330)
T ss_pred             CchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEEC
Confidence            89999999999999999999999999999999999999999999999998766699999999999999999999999999


Q ss_pred             CeEEecccHHHHHHh
Q 022663          227 GELRRAEKLAELDEL  241 (294)
Q Consensus       227 G~i~~~g~~~~~~~~  241 (294)
                      |+|++.|+.+++...
T Consensus       235 G~ive~g~~~~i~~~  249 (330)
T PRK15093        235 GQTVETAPSKELVTT  249 (330)
T ss_pred             CEEEEECCHHHHHhC
Confidence            999999999988764

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=100.00  E-value=9.1e-46  Score=327.04  Aligned_cols=213  Identities=18%  Similarity=0.275  Sum_probs=166.9

Q ss_pred             ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663           12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG   91 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~   91 (294)
                      ++|+++|++++|++   +++|+++||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|.+........   
T Consensus         1 ~~i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~-~G~i~~~g~~~~~~~~~~---   73 (242)
T TIGR03411         1 PILYLEGLSVSFDG---FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPD-EGSVLFGGTDLTGLPEHQ---   73 (242)
T ss_pred             CeEEEEeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CCeEEECCeecCCCCHHH---
Confidence            36899999999975   46999999999999999999999999999999999998876 899998886432110000   


Q ss_pred             CcccccccccccccccCc-ccccccccHHHHh-hcCC-----------C---CcHHHHHHHHHHcCCC--cccccccCCH
Q 022663           92 DLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-FGVE-----------G---SDPVRRERLIELLDID--LQWRMHKVSD  153 (294)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~-----------~---~~~~~~~~~l~~l~l~--~~~~~~~LSg  153 (294)
                             .....+++.++ ..+++.++..+++ +...           .   ....+...+++.+++.  .++++.+|||
T Consensus        74 -------~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~  146 (242)
T TIGR03411        74 -------IARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSH  146 (242)
T ss_pred             -------HHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCH
Confidence                   00112233332 2233444443322 2110           0   0123456778888885  4788999999


Q ss_pred             HHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecc
Q 022663          154 GQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAE  233 (294)
Q Consensus       154 GqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g  233 (294)
                      ||+|||+|||||+.+|++|||||||+|||+.++..++++|.++.+  +.|||++||+++++.++||++++|++|+++..+
T Consensus       147 Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~  224 (242)
T TIGR03411       147 GQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG--KHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEG  224 (242)
T ss_pred             HHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc--CCEEEEEECCHHHHHHhCCEEEEEECCeEEeeC
Confidence            999999999999999999999999999999999999999998853  689999999999999999999999999999999


Q ss_pred             cHHHHHH
Q 022663          234 KLAELDE  240 (294)
Q Consensus       234 ~~~~~~~  240 (294)
                      +++++..
T Consensus       225 ~~~~~~~  231 (242)
T TIGR03411       225 SLDQVQA  231 (242)
T ss_pred             CHHHHhc
Confidence            9888754

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=100.00  E-value=1.2e-45  Score=329.52  Aligned_cols=213  Identities=23%  Similarity=0.344  Sum_probs=167.3

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      +|+++||+++|++   +.+|+|+||+|++|++++|+||||||||||+++|+|++.|+ +|.+.++|.+.......     
T Consensus         2 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~-~G~i~~~g~~~~~~~~~-----   72 (258)
T PRK13548          2 MLEARNLSVRLGG---RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPD-SGEVRLNGRPLADWSPA-----   72 (258)
T ss_pred             eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CCEEEECCEEcccCCHH-----
Confidence            6899999999975   56999999999999999999999999999999999998876 89998887643210000     


Q ss_pred             cccccccccccccccCc-ccccccccHHHH-hhcCC--CC----cHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHH
Q 022663           93 LSYLGGSWSKTVGSAGE-IPLQGDFSAEHM-IFGVE--GS----DPVRRERLIELLDID--LQWRMHKVSDGQRRRVQIC  162 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~--~~----~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lA  162 (294)
                            .+...++++++ ..++...+..++ .+...  ..    .......+++.+++.  .++.+.+|||||||||+||
T Consensus        73 ------~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la  146 (258)
T PRK13548         73 ------ELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLA  146 (258)
T ss_pred             ------HhhhheEEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHH
Confidence                  01112233332 122233344333 22211  11    123456778888885  4788999999999999999


Q ss_pred             HHHc------cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHH
Q 022663          163 MGLL------HPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLA  236 (294)
Q Consensus       163 raL~------~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~  236 (294)
                      |||+      .+|++|||||||+|||+.++..+.++|.++.++.|.|||++|||++++..+||+|++|++|+++..++++
T Consensus       147 ~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~  226 (258)
T PRK13548        147 RVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPA  226 (258)
T ss_pred             HHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHH
Confidence            9999      5999999999999999999999999999987456899999999999999999999999999999999888


Q ss_pred             HHHH
Q 022663          237 ELDE  240 (294)
Q Consensus       237 ~~~~  240 (294)
                      ++.+
T Consensus       227 ~~~~  230 (258)
T PRK13548        227 EVLT  230 (258)
T ss_pred             HHhC
Confidence            7654

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=8.5e-46  Score=334.62  Aligned_cols=218  Identities=22%  Similarity=0.253  Sum_probs=170.4

Q ss_pred             ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663           12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG   91 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~   91 (294)
                      ++|+++|++++|++  ++.+|+++||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|.+.......    
T Consensus         4 ~~l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~-~G~i~i~g~~~~~~~~~----   76 (283)
T PRK13636          4 YILKVEELNYNYSD--GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPS-SGRILFDGKPIDYSRKG----   76 (283)
T ss_pred             ceEEEEeEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC-ccEEEECCEECCCCcch----
Confidence            37999999999963  256999999999999999999999999999999999998876 89999988754210000    


Q ss_pred             CcccccccccccccccCccc--ccccccHHH-HhhcC--CCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHH
Q 022663           92 DLSYLGGSWSKTVGSAGEIP--LQGDFSAEH-MIFGV--EGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQ  160 (294)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~  160 (294)
                           ...++..++++++.+  .....+..+ +.+..  ....    ..+...+++.+++.  .++++.+|||||+||++
T Consensus        77 -----~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~  151 (283)
T PRK13636         77 -----LMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVA  151 (283)
T ss_pred             -----HHHHHhhEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHH
Confidence                 000112233333321  111223333 32211  1111    23456778888885  57889999999999999


Q ss_pred             HHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHH
Q 022663          161 ICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDE  240 (294)
Q Consensus       161 lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  240 (294)
                      |||||+.+|++|||||||+|||+.++..+.++|.+++++.|.|||++|||++++..+|||+++|++|++++.|+++++..
T Consensus       152 laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~  231 (283)
T PRK13636        152 IAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA  231 (283)
T ss_pred             HHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence            99999999999999999999999999999999999876668999999999999999999999999999999999988765


Q ss_pred             h
Q 022663          241 L  241 (294)
Q Consensus       241 ~  241 (294)
                      .
T Consensus       232 ~  232 (283)
T PRK13636        232 E  232 (283)
T ss_pred             C
Confidence            3

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=7.7e-46  Score=326.59  Aligned_cols=215  Identities=20%  Similarity=0.212  Sum_probs=166.1

Q ss_pred             cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663           11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS   90 (294)
Q Consensus        11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~   90 (294)
                      +++|+++|++++|++   +++|+++||+|++||+++|+||||||||||+++|+|+++|+ +|.+.++|.+.......   
T Consensus         3 ~~~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~-~G~i~~~g~~~~~~~~~---   75 (237)
T PRK11614          3 KVMLSFDKVSAHYGK---IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRAT-SGRIVFDGKDITDWQTA---   75 (237)
T ss_pred             ccEEEEEeEEEeeCC---ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC-CceEEECCEecCCCCHH---
Confidence            358999999999975   57999999999999999999999999999999999998876 89999888653211000   


Q ss_pred             CCcccccccccccccccCc-ccccccccHHH-HhhcC--CCC--cHHHHHHHHHHc-CCC--cccccccCCHHHHHHHHH
Q 022663           91 GDLSYLGGSWSKTVGSAGE-IPLQGDFSAEH-MIFGV--EGS--DPVRRERLIELL-DID--LQWRMHKVSDGQRRRVQI  161 (294)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~--~~~--~~~~~~~~l~~l-~l~--~~~~~~~LSgGqkqRv~l  161 (294)
                             ......++++++ ..++...+..+ +.+..  ...  ......++++.+ ++.  .++++.+||||||||++|
T Consensus        76 -------~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~l  148 (237)
T PRK11614         76 -------KIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAI  148 (237)
T ss_pred             -------HHHHhCEEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHH
Confidence                   001112333332 22333334433 32221  111  112334556666 343  467889999999999999


Q ss_pred             HHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHH
Q 022663          162 CMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDE  240 (294)
Q Consensus       162 AraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  240 (294)
                      ||||+.+|++|||||||+|||+.++..+.+.|.++++ .|.|||++|||++++.++||++++|++|+++..|+++++..
T Consensus       149 a~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  226 (237)
T PRK11614        149 GRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRE-QGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA  226 (237)
T ss_pred             HHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence            9999999999999999999999999999999998865 48999999999999999999999999999999999988754

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=100.00  E-value=6e-46  Score=326.13  Aligned_cols=212  Identities=20%  Similarity=0.255  Sum_probs=165.6

Q ss_pred             EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCc
Q 022663           14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL   93 (294)
Q Consensus        14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~   93 (294)
                      |+++||+++|++   +.+|+|+||+|.+||+++|+||||||||||+++|+|++.|+ +|.+.++|.+........     
T Consensus         1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~~~~~-----   71 (232)
T cd03218           1 LRAENLSKRYGK---RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPD-SGKILLDGQDITKLPMHK-----   71 (232)
T ss_pred             CeEEEEEEEeCC---EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEECCEecccCCHhH-----
Confidence            578999999975   46999999999999999999999999999999999998876 899988886432110000     


Q ss_pred             ccccccccccccccCc-ccccccccHHH-HhhcC--CCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHH
Q 022663           94 SYLGGSWSKTVGSAGE-IPLQGDFSAEH-MIFGV--EGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQICM  163 (294)
Q Consensus        94 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAr  163 (294)
                           ..+..++++++ ..++...+..+ +.+..  ....    ......+++.+++.  .++.+.+||||||||++|||
T Consensus        72 -----~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~  146 (232)
T cd03218          72 -----RARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIAR  146 (232)
T ss_pred             -----HHhccEEEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHH
Confidence                 00111233332 22333444433 22211  1111    22346778888885  57889999999999999999


Q ss_pred             HHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHH
Q 022663          164 GLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDE  240 (294)
Q Consensus       164 aL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  240 (294)
                      ||+.+|++|||||||+|||+.++..+.++|.++++ .+.|||++|||++++..+||++++|++|+++..++.+++..
T Consensus       147 al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  222 (232)
T cd03218         147 ALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKD-RGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA  222 (232)
T ss_pred             HHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence            99999999999999999999999999999998865 58999999999999999999999999999999998887653

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=100.00  E-value=4.2e-46  Score=321.33  Aligned_cols=198  Identities=22%  Similarity=0.332  Sum_probs=155.8

Q ss_pred             EEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcc
Q 022663           15 KVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLS   94 (294)
Q Consensus        15 ~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~   94 (294)
                      +++|++++|++.  +++|+++||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|.+....   .....+.
T Consensus         1 ~~~~l~~~~~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~---~~~~~i~   74 (205)
T cd03226           1 RIENISFSYKKG--TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKES-SGSILLNGKPIKAK---ERRKSIG   74 (205)
T ss_pred             CcccEEEEeCCc--CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC-ceEEEECCEEhhhH---HhhcceE
Confidence            368999999641  46999999999999999999999999999999999998876 89998888653210   0111222


Q ss_pred             cccccccccccccCccc--ccccccHH-HHhhcCC--CCcHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHHHcc
Q 022663           95 YLGGSWSKTVGSAGEIP--LQGDFSAE-HMIFGVE--GSDPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMGLLH  167 (294)
Q Consensus        95 ~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~--~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL~~  167 (294)
                      +           +++.+  .....+.. ++.+...  .....++.++++.+++.  .++++.+||||||||++|||||+.
T Consensus        75 ~-----------~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~  143 (205)
T cd03226          75 Y-----------VMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLS  143 (205)
T ss_pred             E-----------EecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHh
Confidence            2           22211  11122333 3322211  12234567888999885  578899999999999999999999


Q ss_pred             CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEE
Q 022663          168 PFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELR  230 (294)
Q Consensus       168 ~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~  230 (294)
                      +|++|||||||+|||+.++..+.++|.++++ .|.|||++|||++++..+||++++|++|+++
T Consensus       144 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv  205 (205)
T cd03226         144 GKDLLIFDEPTSGLDYKNMERVGELIRELAA-QGKAVIVITHDYEFLAKVCDRVLLLANGAIV  205 (205)
T ss_pred             CCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence            9999999999999999999999999998865 4899999999999999999999999999874

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=4.4e-47  Score=314.75  Aligned_cols=217  Identities=20%  Similarity=0.307  Sum_probs=179.3

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      |++++||+|+|++   +.+++++|++|++|.+++|||||||||||||.+++.++..+ +|.+.++|.+.......     
T Consensus         1 MI~i~nv~K~y~~---~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d-~G~i~i~g~~~~~~~s~-----   71 (252)
T COG4604           1 MITIENVSKSYGT---KVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKD-SGEITIDGLELTSTPSK-----   71 (252)
T ss_pred             CeeehhhhHhhCC---EEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhcccc-CceEEEeeeecccCChH-----
Confidence            5899999999986   68999999999999999999999999999999999998887 99999998765432111     


Q ss_pred             cccccccccccccccCc-ccccccccHHHHh-hcC---C-----CCcHHHHHHHHHHcCCC--cccccccCCHHHHHHHH
Q 022663           93 LSYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-FGV---E-----GSDPVRRERLIELLDID--LQWRMHKVSDGQRRRVQ  160 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~---~-----~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~  160 (294)
                            .+.+.+....+ ..+...+|++++. |+.   .     ..++..+.++++.|++.  .+++..+||||||||+.
T Consensus        72 ------~LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAf  145 (252)
T COG4604          72 ------ELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAF  145 (252)
T ss_pred             ------HHHHHHHHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhh
Confidence                  11111111111 2233445565543 321   1     12344567889999986  48899999999999999


Q ss_pred             HHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHH
Q 022663          161 ICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDE  240 (294)
Q Consensus       161 lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  240 (294)
                      ||..++++.++++||||.++||..+..++++.|++++++.|+||++|-||++++..|+|+|+.|++|+++..|+++++..
T Consensus       146 IAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~  225 (252)
T COG4604         146 IAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQ  225 (252)
T ss_pred             hheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999876


Q ss_pred             hhhh
Q 022663          241 LRNS  244 (294)
Q Consensus       241 ~~~~  244 (294)
                      ....
T Consensus       226 ~~~L  229 (252)
T COG4604         226 PEIL  229 (252)
T ss_pred             HHHH
Confidence            5443

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=100.00  E-value=8.4e-46  Score=323.00  Aligned_cols=211  Identities=21%  Similarity=0.272  Sum_probs=163.0

Q ss_pred             EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCc
Q 022663           14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL   93 (294)
Q Consensus        14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~   93 (294)
                      |+++||+++|++   +++|+++||+|.+||+++|+||||||||||+++|+|++.|+ .|.+.++|.+........     
T Consensus         1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~-~G~i~~~g~~~~~~~~~~-----   71 (222)
T cd03224           1 LEVENLNAGYGK---SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPR-SGSIRFDGRDITGLPPHE-----   71 (222)
T ss_pred             CEEeeEEeecCC---eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEECCEEcCCCCHHH-----
Confidence            578999999975   47999999999999999999999999999999999998876 899998886432110000     


Q ss_pred             ccccccccccccccCc-ccccccccHHH-HhhcCC--C--CcHHHHHHHHHHc-CCC--cccccccCCHHHHHHHHHHHH
Q 022663           94 SYLGGSWSKTVGSAGE-IPLQGDFSAEH-MIFGVE--G--SDPVRRERLIELL-DID--LQWRMHKVSDGQRRRVQICMG  164 (294)
Q Consensus        94 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~--~--~~~~~~~~~l~~l-~l~--~~~~~~~LSgGqkqRv~lAra  164 (294)
                           ..+..++++++ ..++..++..+ +.+...  .  ........+++.+ ++.  .++++.+||||||||++||||
T Consensus        72 -----~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~lara  146 (222)
T cd03224          72 -----RARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARA  146 (222)
T ss_pred             -----HHhcCeEEeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHH
Confidence                 00112333333 22334444433 322211  1  1122344566666 343  578899999999999999999


Q ss_pred             HccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHH
Q 022663          165 LLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELD  239 (294)
Q Consensus       165 L~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  239 (294)
                      |+.+|++|||||||+|||+.++..++++|.++++ .+.|||++|||++++..+||++++|++|+++..++.+++.
T Consensus       147 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  220 (222)
T cd03224         147 LMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRD-EGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL  220 (222)
T ss_pred             HhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence            9999999999999999999999999999998865 5899999999999999999999999999999988877654

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=100.00  E-value=4.1e-46  Score=331.81  Aligned_cols=224  Identities=22%  Similarity=0.271  Sum_probs=172.7

Q ss_pred             cEEEcceEEEcCCCC-CCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcc-cC---CCceEEecCCcccccccc
Q 022663           13 SIKVCGMQFSYEGND-KPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHM-VG---GRDVVQVLNRSSFHDTQL   87 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~-~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~-~~---~~g~i~~~~~~~~~~~~~   87 (294)
                      .|+++||+..|.... ...+++||||+|.+||++||||+|||||||+.+.|+|+++ +.   .+|.+.++|.+.......
T Consensus         1 lL~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~   80 (316)
T COG0444           1 LLEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEK   80 (316)
T ss_pred             CceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHH
Confidence            378999999996421 2469999999999999999999999999999999999986 32   357888888865432111


Q ss_pred             cccCCcccccccccccccccCccc---ccccccH-HHH---hhcCCCC--c---HHHHHHHHHHcCCC-----ccccccc
Q 022663           88 VCSGDLSYLGGSWSKTVGSAGEIP---LQGDFSA-EHM---IFGVEGS--D---PVRRERLIELLDID-----LQWRMHK  150 (294)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~---~~~~~~~--~---~~~~~~~l~~l~l~-----~~~~~~~  150 (294)
                      .       ....+.+.+++++|.+   +.+-++. .++   +......  .   .+++.++++.+++.     .+.+|++
T Consensus        81 ~-------~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhe  153 (316)
T COG0444          81 E-------LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHE  153 (316)
T ss_pred             H-------HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcc
Confidence            0       0001112333443322   2222222 111   1111111  1   23456778888885     3789999


Q ss_pred             CCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEE
Q 022663          151 VSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELR  230 (294)
Q Consensus       151 LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~  230 (294)
                      |||||+|||+||.||+.+|++||.||||++||+..+.+++++|+++.++.|.++|+||||+..+.++||||+||..|+|+
T Consensus       154 lSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iV  233 (316)
T COG0444         154 LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIV  233 (316)
T ss_pred             cCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEE
Confidence            99999999999999999999999999999999999999999999999889999999999999999999999999999999


Q ss_pred             ecccHHHHHHhhh
Q 022663          231 RAEKLAELDELRN  243 (294)
Q Consensus       231 ~~g~~~~~~~~~~  243 (294)
                      +.|+.+++++++.
T Consensus       234 E~g~~~~i~~~P~  246 (316)
T COG0444         234 EEGPVEEIFKNPK  246 (316)
T ss_pred             EeCCHHHHhcCCC
Confidence            9999999988754

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1e-45  Score=337.00  Aligned_cols=227  Identities=23%  Similarity=0.337  Sum_probs=171.2

Q ss_pred             cEEEcceEEEcCCCC--CCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccc----
Q 022663           13 SIKVCGMQFSYEGND--KPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQ----   86 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~--~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~----   86 (294)
                      +|+++||+++|++..  ..++|+|+||+|++||+++|+||||||||||+++|+|+++|+ .|.+.++|.+......    
T Consensus         2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~-~G~i~~~g~~~~~~~~~~~~   80 (305)
T PRK13651          2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPD-TGTIEWIFKDEKNKKKTKEK   80 (305)
T ss_pred             EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC-CcEEEEeceecccccccccc
Confidence            489999999996421  125999999999999999999999999999999999998886 8999887654311000    


Q ss_pred             ------ccccC-C-cc-cccccccccccccCcc---cccccccHHHHhhcCC--CCc----HHHHHHHHHHcCCC---cc
Q 022663           87 ------LVCSG-D-LS-YLGGSWSKTVGSAGEI---PLQGDFSAEHMIFGVE--GSD----PVRRERLIELLDID---LQ  145 (294)
Q Consensus        87 ------~~~~~-~-~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~--~~~----~~~~~~~l~~l~l~---~~  145 (294)
                            ..... . .. .....++..++++++.   .++.....+++.++..  ...    ..++.++++.+++.   .+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~  160 (305)
T PRK13651         81 EKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQ  160 (305)
T ss_pred             cccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhh
Confidence                  00000 0 00 0001123344555442   2232222334433321  111    23456788888984   47


Q ss_pred             cccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEee
Q 022663          146 WRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQ  225 (294)
Q Consensus       146 ~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~  225 (294)
                      +++.+|||||||||+|||||+.+|++|||||||++||+.++..++++|.++.+ .|.|||+||||++++.++||||++|+
T Consensus       161 ~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tiiivtHd~~~~~~~adrv~vl~  239 (305)
T PRK13651        161 RSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNK-QGKTIILVTHDLDNVLEWTKRTIFFK  239 (305)
T ss_pred             CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeeCHHHHHHhCCEEEEEE
Confidence            88999999999999999999999999999999999999999999999998864 59999999999999999999999999


Q ss_pred             CCeEEecccHHHHHHh
Q 022663          226 DGELRRAEKLAELDEL  241 (294)
Q Consensus       226 ~G~i~~~g~~~~~~~~  241 (294)
                      +|+++..|++++++..
T Consensus       240 ~G~i~~~g~~~~~~~~  255 (305)
T PRK13651        240 DGKIIKDGDTYDILSD  255 (305)
T ss_pred             CCEEEEECCHHHHhcC
Confidence            9999999999887654

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=9.5e-46  Score=334.77  Aligned_cols=221  Identities=21%  Similarity=0.296  Sum_probs=170.2

Q ss_pred             cEEEcceEEEcCCCC--CCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663           13 SIKVCGMQFSYEGND--KPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS   90 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~--~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~   90 (294)
                      .|+++||+++|++..  .+++|+||||+|++||+++|+||||||||||+|+|+|++.|+ .|.+.++|.+.......   
T Consensus         2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~-~G~i~~~g~~i~~~~~~---   77 (286)
T PRK13646          2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPT-TGTVTVDDITITHKTKD---   77 (286)
T ss_pred             EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CcEEEECCEECcccccc---
Confidence            489999999996311  136999999999999999999999999999999999998886 89999888654211000   


Q ss_pred             CCcccccccccccccccCcc---cccccccHHHHhhcCC--CCc----HHHHHHHHHHcCCC---cccccccCCHHHHHH
Q 022663           91 GDLSYLGGSWSKTVGSAGEI---PLQGDFSAEHMIFGVE--GSD----PVRRERLIELLDID---LQWRMHKVSDGQRRR  158 (294)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~--~~~----~~~~~~~l~~l~l~---~~~~~~~LSgGqkqR  158 (294)
                      ...    ..++..++++++.   .++.....+++.++..  ...    ..++.++++.+++.   .++++.+||||||||
T Consensus        78 ~~~----~~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qr  153 (286)
T PRK13646         78 KYI----RPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRK  153 (286)
T ss_pred             chH----HHHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHH
Confidence            000    0112234444332   1222222233333211  111    23456778888884   367899999999999


Q ss_pred             HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663          159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL  238 (294)
Q Consensus       159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~  238 (294)
                      |+|||||+.+|++|||||||+|||+.++..+.++|.++.++.|.|||+||||++++..+||||++|++|+++..|+++++
T Consensus       154 v~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~  233 (286)
T PRK13646        154 IAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKEL  233 (286)
T ss_pred             HHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence            99999999999999999999999999999999999998766689999999999999999999999999999999999887


Q ss_pred             HHh
Q 022663          239 DEL  241 (294)
Q Consensus       239 ~~~  241 (294)
                      ...
T Consensus       234 ~~~  236 (286)
T PRK13646        234 FKD  236 (286)
T ss_pred             HhC
Confidence            653

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=9e-46  Score=329.68  Aligned_cols=212  Identities=22%  Similarity=0.351  Sum_probs=166.2

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      ||+++|++++|++   +.+|+++||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|.+.......     
T Consensus         2 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~-~G~i~~~g~~~~~~~~~-----   72 (255)
T PRK11231          2 TLRTENLTVGYGT---KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQ-SGTVFLGDKPISMLSSR-----   72 (255)
T ss_pred             EEEEEeEEEEECC---EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC-CcEEEECCEEhHHCCHH-----
Confidence            6999999999975   57999999999999999999999999999999999998776 88898887643210000     


Q ss_pred             cccccccccccccccCc-ccccccccHHH-HhhcCC------C----CcHHHHHHHHHHcCCC--cccccccCCHHHHHH
Q 022663           93 LSYLGGSWSKTVGSAGE-IPLQGDFSAEH-MIFGVE------G----SDPVRRERLIELLDID--LQWRMHKVSDGQRRR  158 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~------~----~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqR  158 (294)
                            .+...++++++ ..++..++..+ +.++..      .    ........+++.+++.  .++++.+|||||+||
T Consensus        73 ------~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr  146 (255)
T PRK11231         73 ------QLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQR  146 (255)
T ss_pred             ------HHhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHH
Confidence                  01112222222 12223333333 222210      0    1123456678888885  578899999999999


Q ss_pred             HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663          159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL  238 (294)
Q Consensus       159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~  238 (294)
                      |+|||||+.+|++|||||||+|||+.++..+.++|.++.+ .|.|||++|||++++.++||++++|++|+++..++++++
T Consensus       147 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  225 (255)
T PRK11231        147 AFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNT-QGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEV  225 (255)
T ss_pred             HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHh
Confidence            9999999999999999999999999999999999998764 489999999999999999999999999999999988876


Q ss_pred             HH
Q 022663          239 DE  240 (294)
Q Consensus       239 ~~  240 (294)
                      ..
T Consensus       226 ~~  227 (255)
T PRK11231        226 MT  227 (255)
T ss_pred             cC
Confidence            53

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=100.00  E-value=1e-45  Score=326.77  Aligned_cols=213  Identities=25%  Similarity=0.328  Sum_probs=166.8

Q ss_pred             EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCc
Q 022663           14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL   93 (294)
Q Consensus        14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~   93 (294)
                      |+++||+++|++.  +.+|+++||+|++|++++|+||||||||||+++|+|++.|+ +|.+.++|.+.......      
T Consensus         1 l~~~~l~~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~------   71 (242)
T cd03295           1 IEFENVTKRYGGG--KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPT-SGEIFIDGEDIREQDPV------   71 (242)
T ss_pred             CEEEEEEEEeCCc--ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CceEEECCeEcCcCChH------
Confidence            4689999999641  46999999999999999999999999999999999998876 89999888653211000      


Q ss_pred             ccccccccccccccCc-ccccccccHHHHh-hc--CCCCc----HHHHHHHHHHcCCC----cccccccCCHHHHHHHHH
Q 022663           94 SYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-FG--VEGSD----PVRRERLIELLDID----LQWRMHKVSDGQRRRVQI  161 (294)
Q Consensus        94 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~--~~~~~----~~~~~~~l~~l~l~----~~~~~~~LSgGqkqRv~l  161 (294)
                           ..+..++++++ ..++...+..+.+ +.  .....    .....++++.+++.    .++++.+|||||+|||+|
T Consensus        72 -----~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~l  146 (242)
T cd03295          72 -----ELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGV  146 (242)
T ss_pred             -----HhhcceEEEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHH
Confidence                 01112333333 2233334443332 21  11111    23456778888885    367889999999999999


Q ss_pred             HHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHH
Q 022663          162 CMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDE  240 (294)
Q Consensus       162 AraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  240 (294)
                      ||||+.+|++|||||||+|||+.++..+.+.|.+++++.|.|||++||+++++..+||+|++|++|+++..++++++.+
T Consensus       147 aral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  225 (242)
T cd03295         147 ARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILR  225 (242)
T ss_pred             HHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHc
Confidence            9999999999999999999999999999999999876558999999999999999999999999999999998887754

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=100.00  E-value=4.7e-46  Score=339.26  Aligned_cols=204  Identities=24%  Similarity=0.363  Sum_probs=163.3

Q ss_pred             EEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcccccccc
Q 022663           21 FSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSW  100 (294)
Q Consensus        21 ~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (294)
                      ++|++   +++|+|+||+|++||++||+||||||||||+|+|+|++.|+ +|.+.++|.+.....            ..+
T Consensus         1 k~y~~---~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~~------------~~~   64 (302)
T TIGR01188         1 KVYGD---FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPT-SGTARVAGYDVVREP------------RKV   64 (302)
T ss_pred             CeeCC---eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCEEcccCH------------HHH
Confidence            35654   57999999999999999999999999999999999998886 899999886532110            011


Q ss_pred             cccccccCc-ccccccccHHHHh-hc--CCCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHHHccCCC
Q 022663          101 SKTVGSAGE-IPLQGDFSAEHMI-FG--VEGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMGLLHPFK  170 (294)
Q Consensus       101 ~~~~~~~~~-~~~~~~~~~~~~~-~~--~~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL~~~p~  170 (294)
                      +..++++++ ..+++.++..+++ +.  .....    .+++.++++.+++.  .++++.+|||||||||+|||||+.+|+
T Consensus        65 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~  144 (302)
T TIGR01188        65 RRSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPD  144 (302)
T ss_pred             HhhcEEecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCC
Confidence            223344443 2344555554432 21  11111    23456788899985  578899999999999999999999999


Q ss_pred             EEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHHh
Q 022663          171 VLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDEL  241 (294)
Q Consensus       171 iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  241 (294)
                      +|||||||+|||+.++..++++|.++++ .|.|||++||+++++.++||+|++|++|+++..|+++++.+.
T Consensus       145 lllLDEPt~gLD~~~~~~l~~~l~~~~~-~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~  214 (302)
T TIGR01188       145 VLFLDEPTTGLDPRTRRAIWDYIRALKE-EGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR  214 (302)
T ss_pred             EEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence            9999999999999999999999999865 489999999999999999999999999999999999887654

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=100.00  E-value=6e-46  Score=323.17  Aligned_cols=207  Identities=27%  Similarity=0.381  Sum_probs=156.9

Q ss_pred             EEEcceEEEcCCCC-CCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           14 IKVCGMQFSYEGND-KPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        14 l~~~~ls~~y~~~~-~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      |+++||+++|++.. .+++|+++||+|++||+++|+||||||||||+|+|+|++.|+ +|.+.++|.+.......    .
T Consensus         1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~-~G~i~~~g~~~~~~~~~----~   75 (218)
T cd03255           1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPT-SGEVRVDGTDISKLSEK----E   75 (218)
T ss_pred             CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCC-ceeEEECCEehhhcchh----H
Confidence            57899999996411 146999999999999999999999999999999999998876 89998888653211000    0


Q ss_pred             cccccccccccccccCc-ccccccccHHH-HhhcC--CCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHHH
Q 022663           93 LSYLGGSWSKTVGSAGE-IPLQGDFSAEH-MIFGV--EGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQIC  162 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lA  162 (294)
                      .   .......++++++ ..++...+..+ +.+..  ....    .+.+.++++.+++.  .++++.+|||||||||+||
T Consensus        76 ~---~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la  152 (218)
T cd03255          76 L---AAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIA  152 (218)
T ss_pred             H---HHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHH
Confidence            0   0000112333332 22334444433 22221  1111    23456788888885  4788999999999999999


Q ss_pred             HHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeE
Q 022663          163 MGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL  229 (294)
Q Consensus       163 raL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i  229 (294)
                      |||+.+|++|||||||+|||+.++..+.++|.+++++.|.|||+||||++++. +||++++|++|++
T Consensus       153 ~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~v~~l~~G~i  218 (218)
T cd03255         153 RALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAE-YADRIIELRDGKI  218 (218)
T ss_pred             HHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh-hhcEEEEeeCCcC
Confidence            99999999999999999999999999999999987645899999999999987 9999999999974

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=100.00  E-value=1.3e-45  Score=329.87  Aligned_cols=218  Identities=22%  Similarity=0.307  Sum_probs=168.7

Q ss_pred             ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCC--CceEEecCCcccccccccc
Q 022663           12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGG--RDVVQVLNRSSFHDTQLVC   89 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~--~g~i~~~~~~~~~~~~~~~   89 (294)
                      ++|+++||+++|++   +.+|+++||+|.+||+++|+||||||||||+++|+|++.|+.  +|.+.++|.........  
T Consensus         3 ~~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~--   77 (262)
T PRK09984          3 TIIRVEKLAKTFNQ---HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRL--   77 (262)
T ss_pred             cEEEEeeEEEEeCC---eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEeccccccc--
Confidence            48999999999975   579999999999999999999999999999999999987752  58999888653211000  


Q ss_pred             cCCcccccccccccccccCc-ccccccccHHHH-hhcCC--------------CCcHHHHHHHHHHcCCC--cccccccC
Q 022663           90 SGDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHM-IFGVE--------------GSDPVRRERLIELLDID--LQWRMHKV  151 (294)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~--------------~~~~~~~~~~l~~l~l~--~~~~~~~L  151 (294)
                      ....    ......++++++ ..+++..+..++ .+...              .....++.++++.+++.  .++.+.+|
T Consensus        78 ~~~~----~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L  153 (262)
T PRK09984         78 ARDI----RKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTL  153 (262)
T ss_pred             chhH----HHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCcccc
Confidence            0000    001112333332 223333443332 22210              00123456788888885  57889999


Q ss_pred             CHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEe
Q 022663          152 SDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRR  231 (294)
Q Consensus       152 SgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~  231 (294)
                      ||||||||+|||||+.+|++|||||||+|||+.++..+.++|.+++++.|.|||++|||++++..+||++++|++|+++.
T Consensus       154 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~  233 (262)
T PRK09984        154 SGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFY  233 (262)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence            99999999999999999999999999999999999999999999876568999999999999999999999999999999


Q ss_pred             cccHHHH
Q 022663          232 AEKLAEL  238 (294)
Q Consensus       232 ~g~~~~~  238 (294)
                      .|+++++
T Consensus       234 ~g~~~~~  240 (262)
T PRK09984        234 DGSSQQF  240 (262)
T ss_pred             eCCHHHh
Confidence            9998875

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.8e-45  Score=337.35  Aligned_cols=228  Identities=18%  Similarity=0.229  Sum_probs=171.9

Q ss_pred             cccEEEcceEEEcCCCC--CCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccc---
Q 022663           11 LNSIKVCGMQFSYEGND--KPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDT---   85 (294)
Q Consensus        11 ~~~l~~~~ls~~y~~~~--~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~---   85 (294)
                      .++|+++||+++|++..  ..++|+|+||+|++||+++|+|+||||||||+++|+|++.|+ +|.+.++|.+.....   
T Consensus        19 ~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~-~G~I~i~g~~~~~~~~~~   97 (320)
T PRK13631         19 DIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSK-YGTIQVGDIYIGDKKNNH   97 (320)
T ss_pred             CceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CCeEEECCEEcccccccc
Confidence            35799999999996421  135999999999999999999999999999999999998886 899999886532110   


Q ss_pred             ccccc---CCcccccccccccccccCcc---cccccccHHHHhhcCC--CCc----HHHHHHHHHHcCCC---ccccccc
Q 022663           86 QLVCS---GDLSYLGGSWSKTVGSAGEI---PLQGDFSAEHMIFGVE--GSD----PVRRERLIELLDID---LQWRMHK  150 (294)
Q Consensus        86 ~~~~~---~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~--~~~----~~~~~~~l~~l~l~---~~~~~~~  150 (294)
                      .....   .... ....++..++++++.   .++.....+++.++..  ...    ..++.++++.+++.   .++.+.+
T Consensus        98 ~~~~~~~~~~~~-~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~  176 (320)
T PRK13631         98 ELITNPYSKKIK-NFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFG  176 (320)
T ss_pred             cccccccccccc-hHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCccc
Confidence            00000   0000 000122334444442   2333322334433321  111    12446678888884   4778999


Q ss_pred             CCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEE
Q 022663          151 VSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELR  230 (294)
Q Consensus       151 LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~  230 (294)
                      |||||||||+|||||+.+|++|||||||+|||+.++..++++|.++.+ .|.|||+||||++++..+||+|++|++|+++
T Consensus       177 LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~-~g~TiiivtHd~~~~~~~adri~vl~~G~i~  255 (320)
T PRK13631        177 LSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKA-NNKTVFVITHTMEHVLEVADEVIVMDKGKIL  255 (320)
T ss_pred             CCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence            999999999999999999999999999999999999999999998764 5899999999999999999999999999999


Q ss_pred             ecccHHHHHHh
Q 022663          231 RAEKLAELDEL  241 (294)
Q Consensus       231 ~~g~~~~~~~~  241 (294)
                      ..|++++++..
T Consensus       256 ~~g~~~~~~~~  266 (320)
T PRK13631        256 KTGTPYEIFTD  266 (320)
T ss_pred             EeCCHHHHhcC
Confidence            99999887654

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=100.00  E-value=1.7e-45  Score=330.12  Aligned_cols=218  Identities=17%  Similarity=0.271  Sum_probs=168.3

Q ss_pred             ccEEEcceEEEcCCC------CCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccc
Q 022663           12 NSIKVCGMQFSYEGN------DKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDT   85 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~------~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~   85 (294)
                      ++|+++||+++|++.      +..++|+|+||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|.+.....
T Consensus         3 ~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~~   81 (267)
T PRK15112          3 TLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT-SGELLIDDHPLHFGD   81 (267)
T ss_pred             ceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCC-CCEEEECCEECCCCc
Confidence            479999999999631      1246999999999999999999999999999999999998886 899998886532110


Q ss_pred             cccccCCcccccccccccccccCccc---ccccccHHHHh-hc--CC-CCc----HHHHHHHHHHcCCC---cccccccC
Q 022663           86 QLVCSGDLSYLGGSWSKTVGSAGEIP---LQGDFSAEHMI-FG--VE-GSD----PVRRERLIELLDID---LQWRMHKV  151 (294)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~--~~-~~~----~~~~~~~l~~l~l~---~~~~~~~L  151 (294)
                      ...           ....++++++.+   +.+..+..+++ +.  .. ...    .+.+.++++.+++.   .++++.+|
T Consensus        82 ~~~-----------~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~L  150 (267)
T PRK15112         82 YSY-----------RSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHML  150 (267)
T ss_pred             hhh-----------HhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhc
Confidence            000           011122222211   22222332221 11  00 111    23456788888883   36678999


Q ss_pred             CHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEe
Q 022663          152 SDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRR  231 (294)
Q Consensus       152 SgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~  231 (294)
                      ||||+|||+|||||+.+|++|||||||++||+.++..+.+.|.++.++.|.|||++||+++++..+||++++|++|+++.
T Consensus       151 S~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~  230 (267)
T PRK15112        151 APGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVE  230 (267)
T ss_pred             CHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEe
Confidence            99999999999999999999999999999999999999999999876568999999999999999999999999999999


Q ss_pred             cccHHHHHHh
Q 022663          232 AEKLAELDEL  241 (294)
Q Consensus       232 ~g~~~~~~~~  241 (294)
                      .++++++.+.
T Consensus       231 ~~~~~~~~~~  240 (267)
T PRK15112        231 RGSTADVLAS  240 (267)
T ss_pred             cCCHHHHhcC
Confidence            9998887654

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=8.8e-46  Score=329.74  Aligned_cols=204  Identities=22%  Similarity=0.319  Sum_probs=161.5

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      ||+++|++++|++   +++|+|+||+|++|++++|+||||||||||+++|+|++.|+ +|.+.++|.+....     ...
T Consensus         1 ml~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~-----~~~   71 (255)
T PRK11248          1 MLQISHLYADYGG---KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ-HGSITLDGKPVEGP-----GAE   71 (255)
T ss_pred             CEEEEEEEEEeCC---eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEECCEECCCC-----CCc
Confidence            4899999999975   57999999999999999999999999999999999998876 89998887653210     011


Q ss_pred             cccccccccccccccCcccccccccHHH-HhhcC--CCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHH
Q 022663           93 LSYLGGSWSKTVGSAGEIPLQGDFSAEH-MIFGV--EGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQICM  163 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAr  163 (294)
                      +.+.++.          ..++...+..+ +.+..  ....    ..++.++++.+++.  .++++.+|||||||||+|||
T Consensus        72 ~~~v~q~----------~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~lar  141 (255)
T PRK11248         72 RGVVFQN----------EGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIAR  141 (255)
T ss_pred             EEEEeCC----------CccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHH
Confidence            2222211          12233334333 22211  1111    23456788888885  47789999999999999999


Q ss_pred             HHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEee--CCeEEecccH
Q 022663          164 GLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQ--DGELRRAEKL  235 (294)
Q Consensus       164 aL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~--~G~i~~~g~~  235 (294)
                      ||+.+|++|||||||+|||+.++..+.++|.+++++.|.|||+||||++++..+||++++|+  +|+++..++.
T Consensus       142 al~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~  215 (255)
T PRK11248        142 ALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL  215 (255)
T ss_pred             HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence            99999999999999999999999999999999865568999999999999999999999998  5999887654

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1e-45  Score=332.12  Aligned_cols=215  Identities=22%  Similarity=0.290  Sum_probs=165.4

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      ||+++||+++|++   +.+|+++||+|++||+++|+||||||||||+|+|+|++.|+ +|.+.++|.+.......     
T Consensus         1 ml~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~i~~~~~~-----   71 (271)
T PRK13638          1 MLATSDLWFRYQD---EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQ-KGAVLWQGKPLDYSKRG-----   71 (271)
T ss_pred             CeEEEEEEEEcCC---cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC-ccEEEECCEEcccccCC-----
Confidence            5899999999975   56999999999999999999999999999999999998886 89999888653210000     


Q ss_pred             cccccccccccccccCccc--ccccccH-HHHhhcC--CCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHH
Q 022663           93 LSYLGGSWSKTVGSAGEIP--LQGDFSA-EHMIFGV--EGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQI  161 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~l  161 (294)
                      .    ..++..++++++.+  .....+. +++.+..  ....    ......+++.+++.  .++++.+||||||||++|
T Consensus        72 ~----~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~l  147 (271)
T PRK13638         72 L----LALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAI  147 (271)
T ss_pred             H----HHHHhheEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHH
Confidence            0    00111223322211  0111122 2222211  1111    12345678888874  477889999999999999


Q ss_pred             HHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHHh
Q 022663          162 CMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDEL  241 (294)
Q Consensus       162 AraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  241 (294)
                      ||||+.+|++|||||||+|||+.++..+.++|.++.+ .|.|||+||||++++..+||++++|++|+++..|+++++...
T Consensus       148 araL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  226 (271)
T PRK13638        148 AGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVA-QGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC  226 (271)
T ss_pred             HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence            9999999999999999999999999999999999865 489999999999999999999999999999999998887543

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=100.00  E-value=5.6e-46  Score=325.34  Aligned_cols=208  Identities=23%  Similarity=0.271  Sum_probs=160.4

Q ss_pred             EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCc-----ccCCCceEEecCCccccccccc
Q 022663           14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKH-----MVGGRDVVQVLNRSSFHDTQLV   88 (294)
Q Consensus        14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~-----~~~~~g~i~~~~~~~~~~~~~~   88 (294)
                      |+++||+++|++   +++|+|+||+|++||+++|+||||||||||+++|+|++     .|. +|.+.++|.+......  
T Consensus         1 i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~-~G~i~~~g~~~~~~~~--   74 (227)
T cd03260           1 IELRDLNVYYGD---KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPD-EGEVLLDGKDIYDLDV--   74 (227)
T ss_pred             CEEEEEEEEcCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCC-CeEEEECCEEhhhcch--
Confidence            578999999975   47999999999999999999999999999999999998     665 8999988865321100  


Q ss_pred             ccCCcccccccccccccccCcc-cccccccHHHH-hhcC--CC-Cc----HHHHHHHHHHcCCC--cccc--cccCCHHH
Q 022663           89 CSGDLSYLGGSWSKTVGSAGEI-PLQGDFSAEHM-IFGV--EG-SD----PVRRERLIELLDID--LQWR--MHKVSDGQ  155 (294)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~--~~-~~----~~~~~~~l~~l~l~--~~~~--~~~LSgGq  155 (294)
                         .    ...++..++++++. .++ ..+..++ .+..  .. ..    ..+..++++.+++.  .++.  +.+|||||
T Consensus        75 ---~----~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~  146 (227)
T cd03260          75 ---D----VLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQ  146 (227)
T ss_pred             ---H----HHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHH
Confidence               0    00111223333332 233 3444332 2211  11 11    23456778888885  3455  59999999


Q ss_pred             HHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccH
Q 022663          156 RRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKL  235 (294)
Q Consensus       156 kqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~  235 (294)
                      ||||+|||||+.+|++|||||||+|||+.++..++++|.++++ . .|||++|||++++..+||++++|++|+++..|++
T Consensus       147 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~  224 (227)
T cd03260         147 QQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKK-E-YTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPT  224 (227)
T ss_pred             HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhh-C-cEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCc
Confidence            9999999999999999999999999999999999999999865 3 8999999999999999999999999999988876


Q ss_pred             HH
Q 022663          236 AE  237 (294)
Q Consensus       236 ~~  237 (294)
                      ++
T Consensus       225 ~~  226 (227)
T cd03260         225 EQ  226 (227)
T ss_pred             cc
Confidence            54

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=100.00  E-value=1.2e-45  Score=350.43  Aligned_cols=225  Identities=25%  Similarity=0.334  Sum_probs=178.5

Q ss_pred             CcccEEEcceEEEcCCC--------CCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcc
Q 022663           10 KLNSIKVCGMQFSYEGN--------DKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSS   81 (294)
Q Consensus        10 ~~~~l~~~~ls~~y~~~--------~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~   81 (294)
                      ..+.++++||++.|...        +...+++||||+|.+||++||||+||||||||.|+|+|++.|+ +|.+.++|.+ 
T Consensus       277 ~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~-~G~i~~~g~~-  354 (539)
T COG1123         277 AEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPS-SGSIIFDGQD-  354 (539)
T ss_pred             cCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEEeCcc-
Confidence            45789999999999731        1245899999999999999999999999999999999999985 9999998876 


Q ss_pred             cccccccccCCcccccccccccccccCc---ccccccccHHHHhh---cCCC-----CcHHHHHHHHHHcCCC---cccc
Q 022663           82 FHDTQLVCSGDLSYLGGSWSKTVGSAGE---IPLQGDFSAEHMIF---GVEG-----SDPVRRERLIELLDID---LQWR  147 (294)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~---~~~~-----~~~~~~~~~l~~l~l~---~~~~  147 (294)
                      .....    +...    ..+..+.++++   ..+.+..+..+.+.   ....     ...+++.++++..++.   ++++
T Consensus       355 ~~~~~----~~~~----~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ry  426 (539)
T COG1123         355 LDLTG----GELR----RLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRY  426 (539)
T ss_pred             ccccc----chhh----hhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcC
Confidence            21100    0000    01112222222   23445555544331   1111     1123466778888885   5899


Q ss_pred             cccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCC
Q 022663          148 MHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDG  227 (294)
Q Consensus       148 ~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G  227 (294)
                      |++|||||||||+|||||+.+|++||+|||||+||+..+.+++++|.++.++.|.|.|+||||+..+..+||||++|++|
T Consensus       427 P~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G  506 (539)
T COG1123         427 PHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDG  506 (539)
T ss_pred             chhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEecccHHHHHHhhhh
Q 022663          228 ELRRAEKLAELDELRNS  244 (294)
Q Consensus       228 ~i~~~g~~~~~~~~~~~  244 (294)
                      +|++.|+.+++++.+..
T Consensus       507 ~iVE~G~~~~v~~~p~h  523 (539)
T COG1123         507 RIVEEGPTEKVFENPQH  523 (539)
T ss_pred             eEEEeCCHHHHhcCCCC
Confidence            99999999999877543

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.8e-45  Score=341.72  Aligned_cols=217  Identities=19%  Similarity=0.318  Sum_probs=172.5

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      ||++ ||+++|++   + .+ |+||+|++||+++|+||||||||||+|+|+|++.|+ +|.+.++|.+......     .
T Consensus         1 ~l~~-~l~k~~~~---~-~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~-~G~I~~~g~~~~~~~~-----~   68 (352)
T PRK11144          1 MLEL-NFKQQLGD---L-CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQ-KGRIVLNGRVLFDAEK-----G   68 (352)
T ss_pred             CeEE-EEEEEeCC---E-EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCEEcccccc-----c
Confidence            4788 99999965   2 33 899999999999999999999999999999998886 8999888865321000     0


Q ss_pred             cccccccccccccccCc-ccccccccHHHH-hhcCCCCcHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHHHccC
Q 022663           93 LSYLGGSWSKTVGSAGE-IPLQGDFSAEHM-IFGVEGSDPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMGLLHP  168 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL~~~  168 (294)
                      .  ......+.++++++ ..+++.++..++ .++......+++.++++.+++.  .++++.+|||||||||+|||||+.+
T Consensus        69 ~--~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~  146 (352)
T PRK11144         69 I--CLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTA  146 (352)
T ss_pred             c--ccchhhCCEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcC
Confidence            0  00011223444443 334555555443 3433322344567888999985  5789999999999999999999999


Q ss_pred             CCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHHhhh
Q 022663          169 FKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDELRN  243 (294)
Q Consensus       169 p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~  243 (294)
                      |++|||||||++||+..+..+++.|+++.++.|.|+|+||||++++..+||++++|++|+++..|+++++...+.
T Consensus       147 p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p~  221 (352)
T PRK11144        147 PELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASSA  221 (352)
T ss_pred             CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCcc
Confidence            999999999999999999999999999877668999999999999999999999999999999999999876543

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=100.00  E-value=2.1e-45  Score=321.64  Aligned_cols=212  Identities=24%  Similarity=0.278  Sum_probs=160.2

Q ss_pred             cEEEcceEEEcCCCC-CCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663           13 SIKVCGMQFSYEGND-KPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG   91 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~-~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~   91 (294)
                      +|+++||+++|++.. ..++|+|+||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|.+.......    
T Consensus         1 ~l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~----   75 (228)
T cd03257           1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPT-SGSIIFDGKDLLKLSRR----   75 (228)
T ss_pred             CeEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEECCEEccccchh----
Confidence            488999999996410 026999999999999999999999999999999999998776 89999888653211000    


Q ss_pred             CcccccccccccccccCccc---ccccccHHHHh-hcC--C--CCcHH---H-HHHHHHHcCCC---cccccccCCHHHH
Q 022663           92 DLSYLGGSWSKTVGSAGEIP---LQGDFSAEHMI-FGV--E--GSDPV---R-RERLIELLDID---LQWRMHKVSDGQR  156 (294)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~--~--~~~~~---~-~~~~l~~l~l~---~~~~~~~LSgGqk  156 (294)
                          ....++..++++++.+   +....+..+++ +..  .  .....   . ..++++.+++.   .++++.+||||||
T Consensus        76 ----~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~  151 (228)
T cd03257          76 ----LRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQR  151 (228)
T ss_pred             ----hHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHH
Confidence                0001112233333322   23334443332 211  1  11111   1 13677888873   4778999999999


Q ss_pred             HHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecc
Q 022663          157 RRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAE  233 (294)
Q Consensus       157 qRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g  233 (294)
                      |||+|||||+.+|++|||||||+|||+.++..+.+.|.+++++.|.|||++|||++++..+||++++|++|+++..|
T Consensus       152 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g  228 (228)
T cd03257         152 QRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG  228 (228)
T ss_pred             HHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence            99999999999999999999999999999999999999987655899999999999999999999999999987653

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.7e-45  Score=345.32  Aligned_cols=222  Identities=19%  Similarity=0.241  Sum_probs=172.7

Q ss_pred             ccEEEcceEEEcCCCCC---------------------CCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCC
Q 022663           12 NSIKVCGMQFSYEGNDK---------------------PPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGG   70 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~~---------------------~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~   70 (294)
                      ++|+++||++.|+....                     ..+|+|+||+|++||+++|+||||||||||+|+|+|++.|+ 
T Consensus         3 ~~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~-   81 (400)
T PRK10070          3 IKLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPT-   81 (400)
T ss_pred             cEEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC-
Confidence            36999999999975210                     12799999999999999999999999999999999999887 


Q ss_pred             CceEEecCCcccccccccccCCcccccccccccccccCc-ccccccccHHHH-hhcC--CCCc----HHHHHHHHHHcCC
Q 022663           71 RDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHM-IFGV--EGSD----PVRRERLIELLDI  142 (294)
Q Consensus        71 ~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~--~~~~----~~~~~~~l~~l~l  142 (294)
                      +|.+.++|.+........    .   ....+..++++++ ..+++..+..++ .+..  ....    .+++.++++.+++
T Consensus        82 sG~I~i~G~~i~~~~~~~----l---~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL  154 (400)
T PRK10070         82 RGQVLIDGVDIAKISDAE----L---REVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGL  154 (400)
T ss_pred             CCEEEECCEECCcCCHHH----H---HHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence            899999887542110000    0   0000112334333 234444554443 3321  1111    2345678888888


Q ss_pred             C--cccccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhce
Q 022663          143 D--LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATH  220 (294)
Q Consensus       143 ~--~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~  220 (294)
                      .  .++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|.++.++.++|||+||||++++.++||+
T Consensus       155 ~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dr  234 (400)
T PRK10070        155 ENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDR  234 (400)
T ss_pred             ChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCE
Confidence            5  57889999999999999999999999999999999999999999999999998766689999999999999999999


Q ss_pred             EEEeeCCeEEecccHHHHHHh
Q 022663          221 LAYIQDGELRRAEKLAELDEL  241 (294)
Q Consensus       221 v~~l~~G~i~~~g~~~~~~~~  241 (294)
                      |++|++|+++..|+++++...
T Consensus       235 i~vL~~G~i~~~g~~~~l~~~  255 (400)
T PRK10070        235 IAIMQNGEVVQVGTPDEILNN  255 (400)
T ss_pred             EEEEECCEEEecCCHHHHHhC
Confidence            999999999999999888654

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=100.00  E-value=5.4e-46  Score=322.58  Aligned_cols=204  Identities=25%  Similarity=0.323  Sum_probs=156.3

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      ||+++|++++|++  ++.+|+|+||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|.+.......    .
T Consensus         1 ~l~~~~l~~~~~~--~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~-~G~i~~~g~~~~~~~~~----~   73 (214)
T TIGR02673         1 MIEFHNVSKAYPG--GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS-RGQVRIAGEDVNRLRGR----Q   73 (214)
T ss_pred             CEEEEeeeEEeCC--CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEECCEEcccCCHH----H
Confidence            4899999999952  257999999999999999999999999999999999998776 89998887653211000    0


Q ss_pred             cccccccccccccccCc-ccccccccHHHH-hhcC--CCC----cHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHH
Q 022663           93 LSYLGGSWSKTVGSAGE-IPLQGDFSAEHM-IFGV--EGS----DPVRRERLIELLDID--LQWRMHKVSDGQRRRVQIC  162 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~--~~~----~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lA  162 (294)
                      .    ..+...++++++ ..++...+..+. .+..  ...    ..+++.++++.+++.  .++.+.+|||||+|||+||
T Consensus        74 ~----~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la  149 (214)
T TIGR02673        74 L----PLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIA  149 (214)
T ss_pred             H----HHHHhheEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHH
Confidence            0    001112333332 223333343332 2211  111    123456788888885  4678899999999999999


Q ss_pred             HHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCe
Q 022663          163 MGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGE  228 (294)
Q Consensus       163 raL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~  228 (294)
                      |||+.+|++|||||||+|||+.++..+.++|.++.+ .|.|||++|||++++..+||++++|++|+
T Consensus       150 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~~~~~~~~~d~i~~l~~G~  214 (214)
T TIGR02673       150 RAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNK-RGTTVIVATHDLSLVDRVAHRVIILDDGR  214 (214)
T ss_pred             HHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence            999999999999999999999999999999999764 48999999999999999999999999985

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.5e-45  Score=324.02  Aligned_cols=214  Identities=19%  Similarity=0.264  Sum_probs=162.5

Q ss_pred             ccEEEcceEEEcCCCC-CCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663           12 NSIKVCGMQFSYEGND-KPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS   90 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~-~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~   90 (294)
                      ++|+++||+++|++.. ..++|+++||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|.+........  
T Consensus         4 ~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~-~G~i~~~g~~i~~~~~~~--   80 (233)
T PRK11629          4 ILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPT-SGDVIFNGQPMSKLSSAA--   80 (233)
T ss_pred             ceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC-ceEEEECCEEcCcCCHHH--
Confidence            5799999999996421 136999999999999999999999999999999999998776 899999886542110000  


Q ss_pred             CCcccccccccccccccCc-ccccccccHHHH-hhcC--CCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHH
Q 022663           91 GDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHM-IFGV--EGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQ  160 (294)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~  160 (294)
                        ..   ......++++++ ..+++.++..+. .+..  ....    .+++.++++.+++.  .++.+.+||||||||++
T Consensus        81 --~~---~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~  155 (233)
T PRK11629         81 --KA---ELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVA  155 (233)
T ss_pred             --HH---HHHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHH
Confidence              00   000012333333 223334444333 2211  1111    23456788888885  47788999999999999


Q ss_pred             HHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEeccc
Q 022663          161 ICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEK  234 (294)
Q Consensus       161 lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~  234 (294)
                      |||||+.+|++|||||||+|||+.++..+.++|.+++++.|.|||++|||++++..+ |++++|++|+++..++
T Consensus       156 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~-~~~~~l~~G~i~~~~~  228 (233)
T PRK11629        156 IARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRM-SRQLEMRDGRLTAELS  228 (233)
T ss_pred             HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhh-CEEEEEECCEEEEEec
Confidence            999999999999999999999999999999999988655689999999999999874 7999999999987765

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.6e-45  Score=333.40  Aligned_cols=218  Identities=22%  Similarity=0.307  Sum_probs=167.8

Q ss_pred             cEEEcceEEEcCCCC--CCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663           13 SIKVCGMQFSYEGND--KPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS   90 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~--~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~   90 (294)
                      +|+++||+++|++..  .+++|+|+||+|++||+++|+||||||||||+|+|+|++.|+ +|.+.++|.+.......   
T Consensus         2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~~~~---   77 (287)
T PRK13641          2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPS-SGTITIAGYHITPETGN---   77 (287)
T ss_pred             EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CcEEEECCEECcccccc---
Confidence            589999999996311  136999999999999999999999999999999999998886 89999988754211000   


Q ss_pred             CCcccccccccccccccCcc---cccccccHHH-HhhcC--CCCc----HHHHHHHHHHcCCC---cccccccCCHHHHH
Q 022663           91 GDLSYLGGSWSKTVGSAGEI---PLQGDFSAEH-MIFGV--EGSD----PVRRERLIELLDID---LQWRMHKVSDGQRR  157 (294)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~--~~~~----~~~~~~~l~~l~l~---~~~~~~~LSgGqkq  157 (294)
                      ...    ...+..++++++.   .++ ..+..+ +.++.  ....    ..++.++++.+++.   .++++.+|||||||
T Consensus        78 ~~~----~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~q  152 (287)
T PRK13641         78 KNL----KKLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMR  152 (287)
T ss_pred             chH----HHHHhceEEEEeChhhhhc-cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHH
Confidence            000    0011122333321   122 234333 32211  1111    23456788888884   47889999999999


Q ss_pred             HHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHH
Q 022663          158 RVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAE  237 (294)
Q Consensus       158 Rv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~  237 (294)
                      ||+|||||+.+|++|||||||+|||+.++..+.++|.++.+ .|.|||++|||++++..+||+|++|++|+++..|++++
T Consensus       153 rl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~-~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~  231 (287)
T PRK13641        153 RVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQK-AGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKE  231 (287)
T ss_pred             HHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence            99999999999999999999999999999999999998864 58999999999999999999999999999999999888


Q ss_pred             HHH
Q 022663          238 LDE  240 (294)
Q Consensus       238 ~~~  240 (294)
                      +..
T Consensus       232 ~~~  234 (287)
T PRK13641        232 IFS  234 (287)
T ss_pred             Hhc
Confidence            754

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=100.00  E-value=3e-45  Score=337.20  Aligned_cols=227  Identities=17%  Similarity=0.196  Sum_probs=172.7

Q ss_pred             CCcccEEEcceEEEcCCC-CCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccC--CCceEEecCCcccccc
Q 022663            9 EKLNSIKVCGMQFSYEGN-DKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVG--GRDVVQVLNRSSFHDT   85 (294)
Q Consensus         9 ~~~~~l~~~~ls~~y~~~-~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~--~~g~i~~~~~~~~~~~   85 (294)
                      ...++|+++||++.|+.. +...+|+||||+|++||+++|+|+||||||||+++|+|++.++  .+|.+.++|.+.....
T Consensus         8 ~~~~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~   87 (330)
T PRK09473          8 QADALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLP   87 (330)
T ss_pred             CCCceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCC
Confidence            445689999999999531 1246999999999999999999999999999999999998774  3789999887643211


Q ss_pred             cccccCCcccccccccccccccCcc---cccccccHHH-Hhh---cCCCCc----HHHHHHHHHHcCCC-----cccccc
Q 022663           86 QLVCSGDLSYLGGSWSKTVGSAGEI---PLQGDFSAEH-MIF---GVEGSD----PVRRERLIELLDID-----LQWRMH  149 (294)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~---~~~~~~----~~~~~~~l~~l~l~-----~~~~~~  149 (294)
                      .....       ......++++++.   .+.+.++..+ +..   ......    ..++.++++.+++.     .+++++
T Consensus        88 ~~~~~-------~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~  160 (330)
T PRK09473         88 EKELN-------KLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPH  160 (330)
T ss_pred             HHHHH-------HHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcc
Confidence            00000       0000123333332   1223333322 211   111111    13445677888874     256899


Q ss_pred             cCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeE
Q 022663          150 KVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL  229 (294)
Q Consensus       150 ~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i  229 (294)
                      +|||||+|||+|||||+.+|++||+||||++||+.++..++++|.++.++.|.|+|+||||++++.++||+|++|++|+|
T Consensus       161 ~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~i  240 (330)
T PRK09473        161 EFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRT  240 (330)
T ss_pred             cCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEE
Confidence            99999999999999999999999999999999999999999999999877799999999999999999999999999999


Q ss_pred             EecccHHHHHHhh
Q 022663          230 RRAEKLAELDELR  242 (294)
Q Consensus       230 ~~~g~~~~~~~~~  242 (294)
                      ++.|+.+++.+..
T Consensus       241 ve~g~~~~i~~~p  253 (330)
T PRK09473        241 MEYGNARDVFYQP  253 (330)
T ss_pred             EEECCHHHHHhCC
Confidence            9999999987654

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=100.00  E-value=1.7e-45  Score=327.28  Aligned_cols=222  Identities=20%  Similarity=0.284  Sum_probs=168.2

Q ss_pred             EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccc--cc--cc
Q 022663           14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDT--QL--VC   89 (294)
Q Consensus        14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~--~~--~~   89 (294)
                      |+++||+++|++   .++|+|+||+|++||+++|+||||||||||+|+|+|++.|+ +|.+.++|.+.....  ..  ..
T Consensus         1 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~i~~~~~~~~~~~~   76 (252)
T TIGR03005         1 VRFSDVTKRFGI---LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPID-EGQIQVEGEQLYHMPGRNGPLVP   76 (252)
T ss_pred             CEEEEEEEEeCC---eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCEEccccccccccccc
Confidence            478999999975   47999999999999999999999999999999999998876 889988886432100  00  00


Q ss_pred             cCCcccccccccccccccCc-ccccccccHHHHh-hcC---CCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHH
Q 022663           90 SGDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-FGV---EGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRR  158 (294)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~---~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqR  158 (294)
                      ....  ....++..++++++ ..++...+..+++ +..   ....    .....++++.+++.  .++.+.+|||||+||
T Consensus        77 ~~~~--~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qr  154 (252)
T TIGR03005        77 ADEK--HLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQR  154 (252)
T ss_pred             cchh--HHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHH
Confidence            0000  00011122333333 2233334443322 211   1111    12346678888885  477889999999999


Q ss_pred             HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663          159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL  238 (294)
Q Consensus       159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~  238 (294)
                      ++|||||+.+|++|||||||+|||+.++..+.++|.+++++.|.|||++|||++++..+||++++|++|++++.|+.+++
T Consensus       155 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  234 (252)
T TIGR03005       155 VAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEI  234 (252)
T ss_pred             HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence            99999999999999999999999999999999999998765689999999999999999999999999999999998887


Q ss_pred             HHh
Q 022663          239 DEL  241 (294)
Q Consensus       239 ~~~  241 (294)
                      ...
T Consensus       235 ~~~  237 (252)
T TIGR03005       235 FRQ  237 (252)
T ss_pred             hcC
Confidence            654

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=100.00  E-value=1.1e-45  Score=342.71  Aligned_cols=210  Identities=20%  Similarity=0.241  Sum_probs=167.3

Q ss_pred             EcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCccccccccc
Q 022663           22 SYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWS  101 (294)
Q Consensus        22 ~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (294)
                      +|++   +.+|+|+||+|++||+++|+||||||||||+|+|+|++.|+ +|.+.++|.+.........       ....+
T Consensus         2 ~~~~---~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~-~G~I~i~G~~i~~~~~~~~-------~~~rr   70 (363)
T TIGR01186         2 KTGG---KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPT-AGQIFIDGENIMKQSPVEL-------REVRR   70 (363)
T ss_pred             ccCC---ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCC-ceEEEECCEECCcCCHHHH-------HHHHh
Confidence            5654   57999999999999999999999999999999999999886 8999999876432110000       00002


Q ss_pred             ccccccCc-ccccccccHHH-HhhcC--CCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHHHccCCCE
Q 022663          102 KTVGSAGE-IPLQGDFSAEH-MIFGV--EGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMGLLHPFKV  171 (294)
Q Consensus       102 ~~~~~~~~-~~~~~~~~~~~-~~~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL~~~p~i  171 (294)
                      ..++++++ ..+++.++..+ +.++.  ....    .+++.++++.+++.  .++++.+|||||||||+|||||+.+|++
T Consensus        71 ~~i~~v~Q~~~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~i  150 (363)
T TIGR01186        71 KKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDI  150 (363)
T ss_pred             CcEEEEECCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence            23444444 34555556544 33321  1222    23456778888885  5889999999999999999999999999


Q ss_pred             EEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHHhh
Q 022663          172 LLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDELR  242 (294)
Q Consensus       172 LlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~  242 (294)
                      |||||||++||+.++..+.+.|.++.++.++|||+||||++++.++||+|++|++|+++..|+++++....
T Consensus       151 LLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p  221 (363)
T TIGR01186       151 LLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNP  221 (363)
T ss_pred             EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCc
Confidence            99999999999999999999999987666899999999999999999999999999999999999887643

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=100.00  E-value=1.2e-45  Score=321.61  Aligned_cols=209  Identities=26%  Similarity=0.384  Sum_probs=163.4

Q ss_pred             EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCc
Q 022663           14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL   93 (294)
Q Consensus        14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~   93 (294)
                      |+++||+++|++. .+++|+|+||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|.+.....        
T Consensus         1 l~~~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~-~G~i~~~g~~~~~~~--------   70 (220)
T cd03263           1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT-SGTAYINGYSIRTDR--------   70 (220)
T ss_pred             CEEEeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEECCEecccch--------
Confidence            5789999999641 146999999999999999999999999999999999998876 899988886532110        


Q ss_pred             ccccccccccccccCc-ccccccccHHHH-hhcC--CCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHH
Q 022663           94 SYLGGSWSKTVGSAGE-IPLQGDFSAEHM-IFGV--EGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQICM  163 (294)
Q Consensus        94 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAr  163 (294)
                          ..+...++++++ ..++...+..++ .+..  ....    .++..++++.+++.  .++++.+|||||+|||+|||
T Consensus        71 ----~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~  146 (220)
T cd03263          71 ----KAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAI  146 (220)
T ss_pred             ----HHHhhhEEEecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHH
Confidence                011122333333 223333444332 2211  1111    23456778888885  47788999999999999999


Q ss_pred             HHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663          164 GLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL  238 (294)
Q Consensus       164 aL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~  238 (294)
                      ||+.+|++|||||||++||+.++..+.+.|.++++  +.|||++|||++++..+||++++|++|+++..++++++
T Consensus       147 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~  219 (220)
T cd03263         147 ALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK--GRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL  219 (220)
T ss_pred             HHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence            99999999999999999999999999999998753  58999999999999999999999999999998887653

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=100.00  E-value=1.1e-45  Score=319.85  Aligned_cols=201  Identities=20%  Similarity=0.307  Sum_probs=158.1

Q ss_pred             EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCc
Q 022663           14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL   93 (294)
Q Consensus        14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~   93 (294)
                      |+++|+++.|++   +.+|+++||+|.+||+++|+||||||||||+++|+|+++|+ +|.+.++|.+...    .....+
T Consensus         1 l~~~~l~~~~~~---~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~----~~~~~i   72 (210)
T cd03269           1 LEVENVTKRFGR---VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPD-SGEVLFDGKPLDI----AARNRI   72 (210)
T ss_pred             CEEEEEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCCchhH----HHHccE
Confidence            478999999965   46999999999999999999999999999999999998776 8999988865321    001122


Q ss_pred             ccccccccccccccCcccccccccHHHHh-hc--CCCC----cHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHH
Q 022663           94 SYLGGSWSKTVGSAGEIPLQGDFSAEHMI-FG--VEGS----DPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMG  164 (294)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~----~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAra  164 (294)
                      .+.++.          ..++...+..+++ +.  ....    ..+.+.++++.+++.  .++++.+||||||||++||||
T Consensus        73 ~~~~q~----------~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~a  142 (210)
T cd03269          73 GYLPEE----------RGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAA  142 (210)
T ss_pred             EEeccC----------CcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHH
Confidence            222211          2233333433322 21  1111    123456778888885  477889999999999999999


Q ss_pred             HccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecc
Q 022663          165 LLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAE  233 (294)
Q Consensus       165 L~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g  233 (294)
                      |+.+|++|||||||+|||+.++..+.+.|.++++ .+.|||++|||++++..+||++++|++|+++..|
T Consensus       143 l~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~-~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~  210 (210)
T cd03269         143 VIHDPELLILDEPFSGLDPVNVELLKDVIRELAR-AGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG  210 (210)
T ss_pred             HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence            9999999999999999999999999999998865 4899999999999999999999999999987653

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=100.00  E-value=3.6e-45  Score=326.34  Aligned_cols=218  Identities=22%  Similarity=0.253  Sum_probs=167.6

Q ss_pred             ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCc-----cccccc
Q 022663           12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRS-----SFHDTQ   86 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~-----~~~~~~   86 (294)
                      ++|+++|++++|++   +.+|+++||+|.+||+++|+||||||||||+++|+|++.|+ .|.+.++|.+     ......
T Consensus         5 ~~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~~i~~~~~   80 (258)
T PRK11701          5 PLLSVRGLTKLYGP---RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPD-AGEVHYRMRDGQLRDLYALSE   80 (258)
T ss_pred             ceEEEeeeEEEcCC---ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CCEEEECCccccccccccCCH
Confidence            47999999999975   47999999999999999999999999999999999998876 8999988875     221100


Q ss_pred             cc----ccCCcccccccccccccccCcccccccccHH-HHhh-----cCCC--CcHHHHHHHHHHcCCC---cccccccC
Q 022663           87 LV----CSGDLSYLGGSWSKTVGSAGEIPLQGDFSAE-HMIF-----GVEG--SDPVRRERLIELLDID---LQWRMHKV  151 (294)
Q Consensus        87 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~~--~~~~~~~~~l~~l~l~---~~~~~~~L  151 (294)
                      ..    ....+.+.++...        ..+....+.. ++.+     ....  .....+.++++.+++.   .++.+.+|
T Consensus        81 ~~~~~~~~~~i~~v~q~~~--------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~L  152 (258)
T PRK11701         81 AERRRLLRTEWGFVHQHPR--------DGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTF  152 (258)
T ss_pred             HHHHHHhhcceEEEeeCcc--------cccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccC
Confidence            00    0112222222110        0112222221 2211     1111  0123446778888884   36789999


Q ss_pred             CHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEe
Q 022663          152 SDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRR  231 (294)
Q Consensus       152 SgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~  231 (294)
                      ||||+||++|||||+.+|++|||||||+|||+.++..+++.|.++.++.|.|||++|||++++..+||++++|++|++++
T Consensus       153 S~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~  232 (258)
T PRK11701        153 SGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVE  232 (258)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence            99999999999999999999999999999999999999999998876568999999999999999999999999999999


Q ss_pred             cccHHHHHHh
Q 022663          232 AEKLAELDEL  241 (294)
Q Consensus       232 ~g~~~~~~~~  241 (294)
                      .|+++++...
T Consensus       233 ~~~~~~~~~~  242 (258)
T PRK11701        233 SGLTDQVLDD  242 (258)
T ss_pred             eCCHHHHhcC
Confidence            9999887654

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=100.00  E-value=2.4e-45  Score=322.01  Aligned_cols=211  Identities=20%  Similarity=0.247  Sum_probs=164.2

Q ss_pred             EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCc
Q 022663           14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL   93 (294)
Q Consensus        14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~   93 (294)
                      |+++||+++|++   +++|+|+||+|++||+++|+||||||||||+++|+|++.|. +|.+.++|.+........     
T Consensus         1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~~-----   71 (230)
T TIGR03410         1 LEVSNLNVYYGQ---SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVK-SGSIRLDGEDITKLPPHE-----   71 (230)
T ss_pred             CEEEeEEEEeCC---eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CCEEEECCEECCCCCHHH-----
Confidence            578999999975   47999999999999999999999999999999999998886 899998876432110000     


Q ss_pred             ccccccccccccccCc-ccccccccHHHH-hhcC--CCC-cHHHHHHHHHHcC-CC--cccccccCCHHHHHHHHHHHHH
Q 022663           94 SYLGGSWSKTVGSAGE-IPLQGDFSAEHM-IFGV--EGS-DPVRRERLIELLD-ID--LQWRMHKVSDGQRRRVQICMGL  165 (294)
Q Consensus        94 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~--~~~-~~~~~~~~l~~l~-l~--~~~~~~~LSgGqkqRv~lAraL  165 (294)
                           .....++++++ ..++...+..++ .+..  ... ......++++.++ +.  .++++.+|||||+||++|||||
T Consensus        72 -----~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al  146 (230)
T TIGR03410        72 -----RARAGIAYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARAL  146 (230)
T ss_pred             -----HHHhCeEEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHH
Confidence                 00112333332 223334444332 2221  111 1223456666665 32  5788999999999999999999


Q ss_pred             ccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663          166 LHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL  238 (294)
Q Consensus       166 ~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~  238 (294)
                      +.+|++|||||||+|||+.++..+.++|.+++++.+.|||++|||++++..+||++++|++|+++..++.+++
T Consensus       147 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~  219 (230)
T TIGR03410       147 VTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL  219 (230)
T ss_pred             hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence            9999999999999999999999999999998765589999999999999999999999999999999998876

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=100.00  E-value=2.1e-45  Score=329.17  Aligned_cols=219  Identities=19%  Similarity=0.331  Sum_probs=169.5

Q ss_pred             cEEEcceEEEcCCC------CCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccc
Q 022663           13 SIKVCGMQFSYEGN------DKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQ   86 (294)
Q Consensus        13 ~l~~~~ls~~y~~~------~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~   86 (294)
                      +|+++||+++|++.      .++.+|+|+||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|.+......
T Consensus         2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~i~~~~~   80 (265)
T TIGR02769         2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPA-QGTVSFRGQDLYQLDR   80 (265)
T ss_pred             eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEECCEEccccCH
Confidence            68999999999531      1256999999999999999999999999999999999998876 8999988865321100


Q ss_pred             ccccCCcccccccccccccccCccc---ccccccHHHHh-hc---CCCC----cHHHHHHHHHHcCCC---cccccccCC
Q 022663           87 LVCSGDLSYLGGSWSKTVGSAGEIP---LQGDFSAEHMI-FG---VEGS----DPVRRERLIELLDID---LQWRMHKVS  152 (294)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~---~~~~----~~~~~~~~l~~l~l~---~~~~~~~LS  152 (294)
                      ..    .    ..++..++++++.+   +....+..+++ +.   ....    ...++.++++.+++.   .++++.+||
T Consensus        81 ~~----~----~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS  152 (265)
T TIGR02769        81 KQ----R----RAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLS  152 (265)
T ss_pred             HH----H----HHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCC
Confidence            00    0    00111233333321   22333443322 11   1111    123456788888884   478899999


Q ss_pred             HHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEec
Q 022663          153 DGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRA  232 (294)
Q Consensus       153 gGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~  232 (294)
                      |||+|||+|||||+.+|++|||||||++||+.++..+.++|.++.++.|.|||+||||++++..+||++++|++|+++..
T Consensus       153 gGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~  232 (265)
T TIGR02769       153 GGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEE  232 (265)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEE
Confidence            99999999999999999999999999999999999999999998765689999999999999999999999999999999


Q ss_pred             ccHHHHHH
Q 022663          233 EKLAELDE  240 (294)
Q Consensus       233 g~~~~~~~  240 (294)
                      |+++++..
T Consensus       233 g~~~~~~~  240 (265)
T TIGR02769       233 CDVAQLLS  240 (265)
T ss_pred             CCHHHHcC
Confidence            99988865

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.7e-45  Score=325.63  Aligned_cols=216  Identities=21%  Similarity=0.224  Sum_probs=166.7

Q ss_pred             cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCccc----CCCceEEecCCccccccc
Q 022663           11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMV----GGRDVVQVLNRSSFHDTQ   86 (294)
Q Consensus        11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~----~~~g~i~~~~~~~~~~~~   86 (294)
                      .++|+++|++++|++   +++|+|+||+|++||+++|+||||||||||+++|+|++.|    ..+|.+.++|........
T Consensus        10 ~~~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~   86 (258)
T PRK14268         10 QPQIKVENLNLWYGE---KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDV   86 (258)
T ss_pred             ceeEEEeeeEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccc
Confidence            568999999999975   5699999999999999999999999999999999998864    248999888764321000


Q ss_pred             ccccCCcccccccccccccccCc-ccccccccHH-HHhhcC--CCCc----HHHHHHHHHHcCCC------cccccccCC
Q 022663           87 LVCSGDLSYLGGSWSKTVGSAGE-IPLQGDFSAE-HMIFGV--EGSD----PVRRERLIELLDID------LQWRMHKVS  152 (294)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~--~~~~----~~~~~~~l~~l~l~------~~~~~~~LS  152 (294)
                           .    ...++..++++++ ..++. .+.. ++.+..  ....    ...+.++++.+++.      .++++.+||
T Consensus        87 -----~----~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS  156 (258)
T PRK14268         87 -----D----VVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLS  156 (258)
T ss_pred             -----h----HHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCC
Confidence                 0    0001122333333 12233 3433 332221  1111    12345677877762      467889999


Q ss_pred             HHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEec
Q 022663          153 DGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRA  232 (294)
Q Consensus       153 gGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~  232 (294)
                      |||+|||+|||||+.+|++|||||||+|||+.++..++++|.++. + +.|||++|||++++.++||++++|++|+++..
T Consensus       157 gG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~-~-~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~  234 (258)
T PRK14268        157 GGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLK-K-DYTIVIVTHNMQQAARISDYTGFFLMGELIEF  234 (258)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-h-CCEEEEEECCHHHHHHhCCEEEEEECCEEEEe
Confidence            999999999999999999999999999999999999999999874 3 79999999999999999999999999999999


Q ss_pred             ccHHHHHHh
Q 022663          233 EKLAELDEL  241 (294)
Q Consensus       233 g~~~~~~~~  241 (294)
                      ++++++.+.
T Consensus       235 ~~~~~~~~~  243 (258)
T PRK14268        235 GQTRQIFHN  243 (258)
T ss_pred             CCHHHHhcC
Confidence            999888654

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.1e-45  Score=330.25  Aligned_cols=215  Identities=26%  Similarity=0.342  Sum_probs=168.5

Q ss_pred             ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663           12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG   91 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~   91 (294)
                      ++|+++||+++|++. .+++|+++||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|.+........   
T Consensus         4 ~~l~~~~l~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~-~G~i~~~g~~i~~~~~~~---   78 (279)
T PRK13635          4 EIIRVEHISFRYPDA-ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE-AGTITVGGMVLSEETVWD---   78 (279)
T ss_pred             ceEEEEEEEEEeCCC-CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC-CcEEEECCEECCcCcHHH---
Confidence            479999999999631 246999999999999999999999999999999999998886 899999887542211000   


Q ss_pred             CcccccccccccccccCccc--ccccccHHH-HhhcC--CCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHH
Q 022663           92 DLSYLGGSWSKTVGSAGEIP--LQGDFSAEH-MIFGV--EGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQ  160 (294)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~  160 (294)
                              ....++++++.+  ++...+..+ +.+..  ....    ..+..++++.+++.  .++.+.+|||||||||+
T Consensus        79 --------~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~  150 (279)
T PRK13635         79 --------VRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVA  150 (279)
T ss_pred             --------HhhheEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHH
Confidence                    111233333321  222234333 32221  1111    23456778888885  57889999999999999


Q ss_pred             HHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHH
Q 022663          161 ICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDE  240 (294)
Q Consensus       161 lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  240 (294)
                      |||||+.+|++|||||||+|||+.++..++++|.++.++.|.|||++|||++++. .||++++|++|+++..|+.+++..
T Consensus       151 laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~~~  229 (279)
T PRK13635        151 IAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAA-QADRVIVMNKGEILEEGTPEEIFK  229 (279)
T ss_pred             HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-cCCEEEEEECCEEEEECCHHHHhc
Confidence            9999999999999999999999999999999999987656899999999999997 599999999999999999887754

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=7.2e-45  Score=319.47  Aligned_cols=210  Identities=22%  Similarity=0.369  Sum_probs=165.9

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      ||+++||+++|++   ..  .++||+|.+||+++|+||||||||||+++|+|++.|+ +|.+.++|.+......  ..  
T Consensus         1 ~l~~~~l~~~~~~---~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~-~G~i~~~g~~~~~~~~--~~--   70 (232)
T PRK10771          1 MLKLTDITWLYHH---LP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPA-SGSLTLNGQDHTTTPP--SR--   70 (232)
T ss_pred             CeEEEEEEEEECC---cc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEECCeecCcCCh--hh--
Confidence            4899999999964   22  3999999999999999999999999999999998876 8999988865321100  00  


Q ss_pred             cccccccccccccccCc-ccccccccHHH-HhhcCC-C-----CcHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHH
Q 022663           93 LSYLGGSWSKTVGSAGE-IPLQGDFSAEH-MIFGVE-G-----SDPVRRERLIELLDID--LQWRMHKVSDGQRRRVQIC  162 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~-~-----~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lA  162 (294)
                               ..++++++ ..++...+..+ +.+... .     ....++.++++.+++.  .++++.+|||||+||++||
T Consensus        71 ---------~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la  141 (232)
T PRK10771         71 ---------RPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALA  141 (232)
T ss_pred             ---------ccEEEEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHH
Confidence                     11222222 22333334333 322211 1     1123456778888885  5788999999999999999


Q ss_pred             HHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHHh
Q 022663          163 MGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDEL  241 (294)
Q Consensus       163 raL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  241 (294)
                      ||++.+|++|||||||+|||+.++..+.++|.++.++.|.|||++|||++++..+||++++|++|++++.|+++++...
T Consensus       142 ral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~  220 (232)
T PRK10771        142 RCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSG  220 (232)
T ss_pred             HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence            9999999999999999999999999999999998766689999999999999999999999999999999998887654

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=100.00  E-value=1.7e-45  Score=330.38  Aligned_cols=216  Identities=21%  Similarity=0.229  Sum_probs=167.0

Q ss_pred             EEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcc
Q 022663           15 KVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLS   94 (294)
Q Consensus        15 ~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~   94 (294)
                      .++|++++|++   +.+|+|+||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|.+........    ..
T Consensus        26 ~~~~~~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~-~G~i~i~g~~~~~~~~~~----~~   97 (269)
T cd03294          26 SKEEILKKTGQ---TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPT-SGKVLIDGQDIAAMSRKE----LR   97 (269)
T ss_pred             hhhhhhhhcCC---ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CeEEEECCEEccccChhh----hh
Confidence            56788888865   57899999999999999999999999999999999998876 899998886532110000    00


Q ss_pred             cccccccccccccCc-ccccccccHHHHh-hc--CCCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHH
Q 022663           95 YLGGSWSKTVGSAGE-IPLQGDFSAEHMI-FG--VEGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMG  164 (294)
Q Consensus        95 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~--~~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAra  164 (294)
                         ......++++++ ..++...+..+++ +.  .....    .+++.++++.+++.  .++.+.+|||||||||+||||
T Consensus        98 ---~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAra  174 (269)
T cd03294          98 ---ELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARA  174 (269)
T ss_pred             ---hhhcCcEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHH
Confidence               000112333333 2233344443332 21  11111    23456778888885  578899999999999999999


Q ss_pred             HccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHHh
Q 022663          165 LLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDEL  241 (294)
Q Consensus       165 L~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  241 (294)
                      |+.+|++|||||||+|||+.++..+.++|.+++++.|.|||++|||++++.++||++++|++|+++..|+++++.+.
T Consensus       175 l~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  251 (269)
T cd03294         175 LAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN  251 (269)
T ss_pred             HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhC
Confidence            99999999999999999999999999999998765689999999999999999999999999999999998887654

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.6e-45  Score=324.81  Aligned_cols=214  Identities=22%  Similarity=0.242  Sum_probs=167.2

Q ss_pred             ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCccc----CCCceEEecCCcccccccc
Q 022663           12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMV----GGRDVVQVLNRSSFHDTQL   87 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~----~~~g~i~~~~~~~~~~~~~   87 (294)
                      ++|+++||+++|++   .++|+|+||+|++||+++|+||||||||||+++|+|++.|    ..+|.+.++|.+...... 
T Consensus         2 ~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~-   77 (250)
T PRK14247          2 NKIEIRDLKVSFGQ---VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDV-   77 (250)
T ss_pred             ceEEEEeeEEEECC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCH-
Confidence            47999999999975   4699999999999999999999999999999999998864    148899888865321100 


Q ss_pred             cccCCcccccccccccccccCcc-cccccccHHHHh-hcC--CC--Cc----HHHHHHHHHHcCCC------cccccccC
Q 022663           88 VCSGDLSYLGGSWSKTVGSAGEI-PLQGDFSAEHMI-FGV--EG--SD----PVRRERLIELLDID------LQWRMHKV  151 (294)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~--~~--~~----~~~~~~~l~~l~l~------~~~~~~~L  151 (294)
                                ..++..++++++. .++...+..+++ +..  ..  ..    .+...++++.+++.      .++.+.+|
T Consensus        78 ----------~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L  147 (250)
T PRK14247         78 ----------IELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKL  147 (250)
T ss_pred             ----------HHHhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccC
Confidence                      0112223333332 233344443332 221  11  01    12345677888863      46788999


Q ss_pred             CHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEe
Q 022663          152 SDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRR  231 (294)
Q Consensus       152 SgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~  231 (294)
                      ||||||||+|||||+.+|++|||||||+|||+.++..+.++|.++. + +.|||++|||++++..+||++++|++|+++.
T Consensus       148 SgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~  225 (250)
T PRK14247        148 SGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELK-K-DMTIVLVTHFPQQAARISDYVAFLYKGQIVE  225 (250)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhcCEEEEEECCeEEE
Confidence            9999999999999999999999999999999999999999999874 3 7999999999999999999999999999999


Q ss_pred             cccHHHHHHh
Q 022663          232 AEKLAELDEL  241 (294)
Q Consensus       232 ~g~~~~~~~~  241 (294)
                      .|+++++...
T Consensus       226 ~g~~~~~~~~  235 (250)
T PRK14247        226 WGPTREVFTN  235 (250)
T ss_pred             ECCHHHHHcC
Confidence            9999887653

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=100.00  E-value=1.9e-45  Score=318.94  Aligned_cols=199  Identities=23%  Similarity=0.381  Sum_probs=153.6

Q ss_pred             EEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcc
Q 022663           15 KVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLS   94 (294)
Q Consensus        15 ~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~   94 (294)
                      +++||+++|++   +++|+++||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|.+...     ....+.
T Consensus         1 ~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~-~G~i~~~g~~~~~-----~~~~i~   71 (213)
T cd03235           1 EVEDLTVSYGG---HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT-SGSIRVFGKPLEK-----ERKRIG   71 (213)
T ss_pred             CcccceeEECC---EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC-CCEEEECCccHHH-----HHhheE
Confidence            36899999975   46999999999999999999999999999999999998876 8999888864310     011233


Q ss_pred             cccccccccccccCcccccccccHHH-HhhcCCC-------C---cHHHHHHHHHHcCCC--cccccccCCHHHHHHHHH
Q 022663           95 YLGGSWSKTVGSAGEIPLQGDFSAEH-MIFGVEG-------S---DPVRRERLIELLDID--LQWRMHKVSDGQRRRVQI  161 (294)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-------~---~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~l  161 (294)
                      +.++...        .......+..+ +.+....       .   ..++...+++.+++.  .++++.+||||||||++|
T Consensus        72 ~v~q~~~--------~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~l  143 (213)
T cd03235          72 YVPQRRS--------IDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLL  143 (213)
T ss_pred             Eeccccc--------cccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHH
Confidence            3322110        00001123333 2222110       0   123456778888885  577899999999999999


Q ss_pred             HHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEec
Q 022663          162 CMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRA  232 (294)
Q Consensus       162 AraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~  232 (294)
                      ||||+.+|++|||||||+|||+.++..+.++|.++++ .|.|||++|||++++.++||++++|++| +++.
T Consensus       144 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~  212 (213)
T cd03235         144 ARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRR-EGMTILVVTHDLGLVLEYFDRVLLLNRT-VVAS  212 (213)
T ss_pred             HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcCEEEEEcCc-Eeec
Confidence            9999999999999999999999999999999999865 5899999999999999999999999886 4443

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.8e-45  Score=326.00  Aligned_cols=218  Identities=21%  Similarity=0.232  Sum_probs=166.1

Q ss_pred             CcccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcc--c--CCCceEEecCCcccccc
Q 022663           10 KLNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHM--V--GGRDVVQVLNRSSFHDT   85 (294)
Q Consensus        10 ~~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~--~--~~~g~i~~~~~~~~~~~   85 (294)
                      ..|+|+++||+++|++   +.+|+++||+|++||+++|+||||||||||+|+|+|++.  +  ..+|.+.++|.+.....
T Consensus         3 ~~~~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~   79 (253)
T PRK14242          3 SPPKMEARGLSFFYGD---FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPH   79 (253)
T ss_pred             CCcEEEEeeeEEEECC---eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccc
Confidence            3568999999999965   469999999999999999999999999999999999863  2  24899998886532100


Q ss_pred             cccccCCcccccccccccccccCc-ccccccccHHHHhhcC--CCC-c----HHHHHHHHHHcCCC------cccccccC
Q 022663           86 QLVCSGDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMIFGV--EGS-D----PVRRERLIELLDID------LQWRMHKV  151 (294)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~-~----~~~~~~~l~~l~l~------~~~~~~~L  151 (294)
                      .     .    ...++..++++++ ..++.....+++.++.  ... .    .++...+++.+++.      .++++.+|
T Consensus        80 ~-----~----~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L  150 (253)
T PRK14242         80 V-----D----VVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGL  150 (253)
T ss_pred             c-----C----HHHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccC
Confidence            0     0    0011122333333 2223322223333221  111 1    23345677777762      36778999


Q ss_pred             CHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEe
Q 022663          152 SDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRR  231 (294)
Q Consensus       152 SgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~  231 (294)
                      ||||||||+|||||+.+|++|||||||+|||+.++..+.++|.++. + +.|||++|||++++.++||+|++|++|+++.
T Consensus       151 SgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~  228 (253)
T PRK14242        151 SGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELK-A-RYTIIIVTHNMQQAARVSDVTAFFYMGKLIE  228 (253)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-c-CCeEEEEEecHHHHHHhCCEEEEEECCEEEE
Confidence            9999999999999999999999999999999999999999999884 3 7899999999999999999999999999999


Q ss_pred             cccHHHHHHh
Q 022663          232 AEKLAELDEL  241 (294)
Q Consensus       232 ~g~~~~~~~~  241 (294)
                      .|+++++.+.
T Consensus       229 ~g~~~~~~~~  238 (253)
T PRK14242        229 VGPTEQIFTR  238 (253)
T ss_pred             eCCHHHHHcC
Confidence            9998887654

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.2e-45  Score=330.44  Aligned_cols=218  Identities=23%  Similarity=0.316  Sum_probs=169.0

Q ss_pred             ccEEEcceEEEcCCCC---CCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccc
Q 022663           12 NSIKVCGMQFSYEGND---KPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLV   88 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~---~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~   88 (294)
                      ++|+++|++++|++..   .+++|+|+||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|.+....... 
T Consensus         3 ~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~-~G~i~i~g~~i~~~~~~-   80 (280)
T PRK13633          3 EMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPS-EGKVYVDGLDTSDEENL-   80 (280)
T ss_pred             ceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEECCEeccccccH-
Confidence            4799999999996321   246999999999999999999999999999999999998876 89999888654211000 


Q ss_pred             ccCCcccccccccccccccCccc---ccccccHHHHhhcCC--CCc----HHHHHHHHHHcCCC--cccccccCCHHHHH
Q 022663           89 CSGDLSYLGGSWSKTVGSAGEIP---LQGDFSAEHMIFGVE--GSD----PVRRERLIELLDID--LQWRMHKVSDGQRR  157 (294)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~--~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkq  157 (294)
                               ...+..++++++.+   ++.....+++.+...  ...    ...+.++++.+++.  .++++.+|||||||
T Consensus        81 ---------~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~q  151 (280)
T PRK13633         81 ---------WDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQ  151 (280)
T ss_pred             ---------HHHhhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHH
Confidence                     00112233333221   222112233333211  111    23456778888885  57889999999999


Q ss_pred             HHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHH
Q 022663          158 RVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAE  237 (294)
Q Consensus       158 Rv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~  237 (294)
                      ||+|||||+.+|++|||||||+|||+.++..+.++|.+++++.|.|||++|||++++.. ||++++|++|+++..|++++
T Consensus       152 rv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~  230 (280)
T PRK13633        152 RVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE-ADRIIVMDSGKVVMEGTPKE  230 (280)
T ss_pred             HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhc-CCEEEEEECCEEEEecCHHH
Confidence            99999999999999999999999999999999999999876568999999999999986 99999999999999999988


Q ss_pred             HHHh
Q 022663          238 LDEL  241 (294)
Q Consensus       238 ~~~~  241 (294)
                      +...
T Consensus       231 ~~~~  234 (280)
T PRK13633        231 IFKE  234 (280)
T ss_pred             HhcC
Confidence            7653

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=8.3e-46  Score=316.20  Aligned_cols=211  Identities=20%  Similarity=0.314  Sum_probs=179.3

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      +|++++|+++|+.   +.+++|+||++++|++.|++|||||||||.+|+|.|++.|+ .|.|.++|.+....        
T Consensus         2 ~L~ie~vtK~Fg~---k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~-~G~I~~~g~~~~~~--------   69 (300)
T COG4152           2 ALEIEGVTKSFGD---KKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPT-EGEITWNGGPLSQE--------   69 (300)
T ss_pred             ceEEecchhccCc---eeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCcc-CceEEEcCcchhhh--------
Confidence            6999999999986   67999999999999999999999999999999999999987 99999999764321        


Q ss_pred             cccccccccccccccCc-ccccccccHHHH-hh--cCCCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHHH
Q 022663           93 LSYLGGSWSKTVGSAGE-IPLQGDFSAEHM-IF--GVEGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQIC  162 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~--~~~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lA  162 (294)
                             ....++|.++ -.+++.++..+- .|  .+.+..    ......|++++++.  ..+++.+||.|++|++.+.
T Consensus        70 -------~~~rIGyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfi  142 (300)
T COG4152          70 -------IKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFI  142 (300)
T ss_pred             -------hhhhcccChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHH
Confidence                   1234555554 346677776543 22  233333    23457899999985  5778999999999999999


Q ss_pred             HHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHHhh
Q 022663          163 MGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDELR  242 (294)
Q Consensus       163 raL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~  242 (294)
                      .+++++|+++|||||||||||.+.+.+.+.+.++.. .|.|||++||.|+.++++||++++|++|+.+..|+.+++.+..
T Consensus       143 saviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~-~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~~~  221 (300)
T COG4152         143 SAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKE-EGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRSF  221 (300)
T ss_pred             HHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHh-cCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHHhc
Confidence            999999999999999999999999999999999864 6999999999999999999999999999999999999988754


Q ss_pred             h
Q 022663          243 N  243 (294)
Q Consensus       243 ~  243 (294)
                      .
T Consensus       222 G  222 (300)
T COG4152         222 G  222 (300)
T ss_pred             C
Confidence            4

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=100.00  E-value=5.3e-45  Score=325.06  Aligned_cols=223  Identities=21%  Similarity=0.235  Sum_probs=170.0

Q ss_pred             ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663           12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG   91 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~   91 (294)
                      ++|+++||+++|++   +.+|+|+||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|........  ..+
T Consensus         4 ~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~-~G~i~~~g~~~~~~~~--~~~   77 (257)
T PRK10619          4 NKLNVIDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS-EGSIVVNGQTINLVRD--KDG   77 (257)
T ss_pred             ccEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CeEEEECCEEcccccc--ccc
Confidence            36999999999975   57999999999999999999999999999999999998876 8999888864321000  000


Q ss_pred             Ccccc----cccccccccccCc-ccccccccHHHHh-hc---CCCCc----HHHHHHHHHHcCCC--c-ccccccCCHHH
Q 022663           92 DLSYL----GGSWSKTVGSAGE-IPLQGDFSAEHMI-FG---VEGSD----PVRRERLIELLDID--L-QWRMHKVSDGQ  155 (294)
Q Consensus        92 ~~~~~----~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~---~~~~~----~~~~~~~l~~l~l~--~-~~~~~~LSgGq  155 (294)
                      .+...    ...++..++++++ ..++...+..+++ +.   .....    ..+..++++.+++.  . ++++.+|||||
T Consensus        78 ~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~  157 (257)
T PRK10619         78 QLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQ  157 (257)
T ss_pred             ccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHH
Confidence            00000    0011223444443 2233344443332 21   11111    23456788888885  2 67889999999


Q ss_pred             HHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccH
Q 022663          156 RRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKL  235 (294)
Q Consensus       156 kqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~  235 (294)
                      |||++|||||+.+|++|||||||+|||+.++..+.++|.++.+ .|.|||+||||++++..+||||++|++|++++.|++
T Consensus       158 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~  236 (257)
T PRK10619        158 QQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAE-EGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAP  236 (257)
T ss_pred             HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCH
Confidence            9999999999999999999999999999999999999998864 589999999999999999999999999999999998


Q ss_pred             HHHHHh
Q 022663          236 AELDEL  241 (294)
Q Consensus       236 ~~~~~~  241 (294)
                      +++...
T Consensus       237 ~~~~~~  242 (257)
T PRK10619        237 EQLFGN  242 (257)
T ss_pred             HHhhhC
Confidence            887543

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=9.1e-46  Score=302.93  Aligned_cols=229  Identities=21%  Similarity=0.265  Sum_probs=180.2

Q ss_pred             cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663           11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS   90 (294)
Q Consensus        11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~   90 (294)
                      ++.|+++|+.|+|+.   ..+|++||++-.+|+++.|||.|||||||+||||.=+..|+ .|.|.++|....-...  ..
T Consensus         4 ~~~l~v~dlHK~~G~---~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~-~G~I~v~geei~~k~~--~~   77 (256)
T COG4598           4 ENALEVEDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS-AGSIRVNGEEIRLKRD--KD   77 (256)
T ss_pred             ccceehhHHHhhccc---chhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCC-CceEEECCeEEEeeeC--CC
Confidence            457999999999986   57999999999999999999999999999999999888886 8898888865421110  01


Q ss_pred             CCccccc----ccccccccccCc-ccccccccHHHHhh-------cCCC-CcHHHHHHHHHHcCCC--cccccccCCHHH
Q 022663           91 GDLSYLG----GSWSKTVGSAGE-IPLQGDFSAEHMIF-------GVEG-SDPVRRERLIELLDID--LQWRMHKVSDGQ  155 (294)
Q Consensus        91 ~~~~~~~----~~~~~~~~~~~~-~~~~~~~~~~~~~~-------~~~~-~~~~~~~~~l~~l~l~--~~~~~~~LSgGq  155 (294)
                      +......    +.++...+++++ +.+...++.-++..       +... ...++.+.++...|+.  .+.+|..|||||
T Consensus        78 G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQ  157 (256)
T COG4598          78 GQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQ  157 (256)
T ss_pred             CCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchH
Confidence            1111000    112233445544 44555565543321       1111 1123456677788885  578999999999


Q ss_pred             HHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccH
Q 022663          156 RRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKL  235 (294)
Q Consensus       156 kqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~  235 (294)
                      +||++|||||+.+|+++|+|||||+|||+...++++.+.+++++ |.|+++|||.+.++..++.+|++|++|.|.+.|+|
T Consensus       158 QQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeE-grTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~G~P  236 (256)
T COG4598         158 QQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEE-GRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPP  236 (256)
T ss_pred             HHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHh-CCeEEEEeeehhHHHhhhhheEEeecceecccCCh
Confidence            99999999999999999999999999999999999999999865 99999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhh
Q 022663          236 AELDELRNSTN  246 (294)
Q Consensus       236 ~~~~~~~~~~~  246 (294)
                      ++++.++.+..
T Consensus       237 ~qvf~nP~S~R  247 (256)
T COG4598         237 EQVFGNPQSPR  247 (256)
T ss_pred             HHHhcCCCCHH
Confidence            99998876543

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.7e-45  Score=324.58  Aligned_cols=217  Identities=21%  Similarity=0.226  Sum_probs=167.2

Q ss_pred             cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccC----CCceEEecCCccccccc
Q 022663           11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVG----GRDVVQVLNRSSFHDTQ   86 (294)
Q Consensus        11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~----~~g~i~~~~~~~~~~~~   86 (294)
                      +++|+++||+++|++   +++|+|+||+|.+||+++|+||||||||||+++|+|++.|+    .+|.+.++|.+......
T Consensus         2 ~~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~   78 (253)
T PRK14267          2 KFAIETVNLRVYYGS---NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDV   78 (253)
T ss_pred             cceEEEEeEEEEeCC---eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccccc
Confidence            347999999999975   46999999999999999999999999999999999998763    38999988865321000


Q ss_pred             ccccCCcccccccccccccccCc-ccccccccHHH-HhhcC--CCC--c----HHHHHHHHHHcCCC------ccccccc
Q 022663           87 LVCSGDLSYLGGSWSKTVGSAGE-IPLQGDFSAEH-MIFGV--EGS--D----PVRRERLIELLDID------LQWRMHK  150 (294)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~--~~~--~----~~~~~~~l~~l~l~------~~~~~~~  150 (294)
                               ....++..++++++ ..++...+..+ +.+..  ...  .    .....++++.+++.      .++++.+
T Consensus        79 ---------~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~  149 (253)
T PRK14267         79 ---------DPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSN  149 (253)
T ss_pred             ---------ChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhh
Confidence                     00011122333333 22333444433 32221  110  1    12345677777762      4678899


Q ss_pred             CCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEE
Q 022663          151 VSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELR  230 (294)
Q Consensus       151 LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~  230 (294)
                      ||||||||++|||||+.+|++|||||||+|||+.++..+.+.|.++. + +.|||++|||++++..+||+|++|++|+++
T Consensus       150 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~  227 (253)
T PRK14267        150 LSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELK-K-EYTIVLVTHSPAQAARVSDYVAFLYLGKLI  227 (253)
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-h-CCEEEEEECCHHHHHhhCCEEEEEECCEEE
Confidence            99999999999999999999999999999999999999999999885 3 689999999999999999999999999999


Q ss_pred             ecccHHHHHHh
Q 022663          231 RAEKLAELDEL  241 (294)
Q Consensus       231 ~~g~~~~~~~~  241 (294)
                      ..|+++++.+.
T Consensus       228 ~~~~~~~~~~~  238 (253)
T PRK14267        228 EVGPTRKVFEN  238 (253)
T ss_pred             EeCCHHHHHhC
Confidence            99999887643

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=100.00  E-value=4.4e-45  Score=316.26  Aligned_cols=200  Identities=24%  Similarity=0.363  Sum_probs=157.4

Q ss_pred             EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCc
Q 022663           14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL   93 (294)
Q Consensus        14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~   93 (294)
                      |+++|++++|++   +.  .|+||+|.+||+++|+||||||||||+++|+|++.|+ +|.+.++|.+......  .    
T Consensus         1 i~~~~l~~~~~~---~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~-~G~i~~~g~~~~~~~~--~----   68 (211)
T cd03298           1 VRLDKIRFSYGE---QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQ-SGRVLINGVDVTAAPP--A----   68 (211)
T ss_pred             CEEEeEEEEeCC---Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEECCEEcCcCCH--h----
Confidence            478999999964   22  3999999999999999999999999999999998876 8999888865321100  0    


Q ss_pred             ccccccccccccccCc-ccccccccHHHHh-hcCC---C---CcHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHH
Q 022663           94 SYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-FGVE---G---SDPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICM  163 (294)
Q Consensus        94 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~---~---~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAr  163 (294)
                             ...++++++ ..++...+..+++ +...   .   ....+..++++.+++.  .++++.+||||||||++|||
T Consensus        69 -------~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~  141 (211)
T cd03298          69 -------DRPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALAR  141 (211)
T ss_pred             -------HccEEEEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHH
Confidence                   112223222 2233344443332 2221   1   1123456788888885  57889999999999999999


Q ss_pred             HHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEec
Q 022663          164 GLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRA  232 (294)
Q Consensus       164 aL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~  232 (294)
                      ||+.+|++|||||||+|||+.++..++++|.+++++.+.|||++|||++++..+||++++|++|+++..
T Consensus       142 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~  210 (211)
T cd03298         142 VLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQ  210 (211)
T ss_pred             HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeec
Confidence            999999999999999999999999999999998766689999999999999999999999999998765

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=100.00  E-value=1e-44  Score=322.48  Aligned_cols=218  Identities=23%  Similarity=0.311  Sum_probs=166.1

Q ss_pred             ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCc-----cccccc
Q 022663           12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRS-----SFHDTQ   86 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~-----~~~~~~   86 (294)
                      ++|+++||+++|++   ..+|+|+||+|++|++++|+||||||||||+++|+|++.|+ +|.+.++|.+     ......
T Consensus         2 ~~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~~~~~   77 (253)
T TIGR02323         2 PLLQVSGLSKSYGG---GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPD-HGTATYIMRSGAELELYQLSE   77 (253)
T ss_pred             ceEEEeeeEEEeCC---ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEEecccccccccccCCH
Confidence            47999999999975   46899999999999999999999999999999999998876 8999888754     211000


Q ss_pred             c----cccCCcccccccccccccccCcccccccccHH-HHh-----hcCCC--CcHHHHHHHHHHcCCC---cccccccC
Q 022663           87 L----VCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAE-HMI-----FGVEG--SDPVRRERLIELLDID---LQWRMHKV  151 (294)
Q Consensus        87 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~--~~~~~~~~~l~~l~l~---~~~~~~~L  151 (294)
                      .    .....+.+..+...        ..+....+.. ++.     +....  .....+.++++.+++.   .++.+.+|
T Consensus        78 ~~~~~~~~~~i~~~~q~~~--------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~L  149 (253)
T TIGR02323        78 AERRRLMRTEWGFVHQNPR--------DGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAF  149 (253)
T ss_pred             HHHHHhhhcceEEEEeCcc--------cccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhc
Confidence            0    00011222221100        0011112221 111     11100  1123456778888884   46788999


Q ss_pred             CHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEe
Q 022663          152 SDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRR  231 (294)
Q Consensus       152 SgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~  231 (294)
                      ||||||||+|||||+.+|++|||||||+|||+.++..++++|.++.++.|.|||+||||++++..+||++++|++|+++.
T Consensus       150 SgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~  229 (253)
T TIGR02323       150 SGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVE  229 (253)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence            99999999999999999999999999999999999999999998876668999999999999999999999999999999


Q ss_pred             cccHHHHHHh
Q 022663          232 AEKLAELDEL  241 (294)
Q Consensus       232 ~g~~~~~~~~  241 (294)
                      .++++++...
T Consensus       230 ~~~~~~~~~~  239 (253)
T TIGR02323       230 SGLTDQVLDD  239 (253)
T ss_pred             ECCHHHHhcC
Confidence            9998887643

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.6e-45  Score=329.25  Aligned_cols=214  Identities=24%  Similarity=0.317  Sum_probs=166.8

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      ||+++||+++|++  .+++|+|+||+|.+||+++|+||||||||||+|+|+|++.++ +|.+.++|.+........    
T Consensus         1 ~l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~-~G~i~~~g~~~~~~~~~~----   73 (275)
T PRK13639          1 ILETRDLKYSYPD--GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPT-SGEVLIKGEPIKYDKKSL----   73 (275)
T ss_pred             CEEEEEEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-ccEEEECCEECccccchH----
Confidence            4889999999963  246999999999999999999999999999999999998876 899998886542100000    


Q ss_pred             cccccccccccccccCccc---ccccccH-HHHhhcC--CCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHH
Q 022663           93 LSYLGGSWSKTVGSAGEIP---LQGDFSA-EHMIFGV--EGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQ  160 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~  160 (294)
                           ..+...++++++.+   ++. .+. +++.++.  ....    .++..++++.+++.  .++++.+|||||+||++
T Consensus        74 -----~~~~~~i~~v~q~~~~~~~~-~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~  147 (275)
T PRK13639         74 -----LEVRKTVGIVFQNPDDQLFA-PTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVA  147 (275)
T ss_pred             -----HHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHH
Confidence                 00111233333211   122 233 3332221  0111    23456778888885  57889999999999999


Q ss_pred             HHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHH
Q 022663          161 ICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDE  240 (294)
Q Consensus       161 lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  240 (294)
                      |||||+.+|++|||||||+|||+.++..++++|.++.+ .|.|||++|||++++..+||++++|++|+++..|+++++..
T Consensus       148 laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  226 (275)
T PRK13639        148 IAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNK-EGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFS  226 (275)
T ss_pred             HHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence            99999999999999999999999999999999999865 48999999999999999999999999999999999988754

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=5.6e-45  Score=327.04  Aligned_cols=217  Identities=25%  Similarity=0.308  Sum_probs=168.0

Q ss_pred             cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663           11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS   90 (294)
Q Consensus        11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~   90 (294)
                      .++|+++|++++|++. .+++|+|+||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|.+.......   
T Consensus         5 ~~~l~i~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~-~G~i~~~g~~~~~~~~~---   79 (269)
T PRK13648          5 NSIIVFKNVSFQYQSD-ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVK-SGEIFYNNQAITDDNFE---   79 (269)
T ss_pred             CceEEEEEEEEEcCCC-CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC-ceEEEECCEECCcCCHH---
Confidence            5689999999999742 235899999999999999999999999999999999998876 89999988653211000   


Q ss_pred             CCcccccccccccccccCccc--cccccc-HHHHhhcCC--CCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHH
Q 022663           91 GDLSYLGGSWSKTVGSAGEIP--LQGDFS-AEHMIFGVE--GSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRV  159 (294)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~--~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv  159 (294)
                              .++..++++++.+  ++...+ .+++.+...  ...    .+.+..+++.+++.  .++++.+|||||+||+
T Consensus        80 --------~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl  151 (269)
T PRK13648         80 --------KLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRV  151 (269)
T ss_pred             --------HHHhheeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHH
Confidence                    0111223332211  122222 233322211  111    12345678888875  5788999999999999


Q ss_pred             HHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHH
Q 022663          160 QICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELD  239 (294)
Q Consensus       160 ~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  239 (294)
                      +|||||+.+|++|||||||+|||+.++..+++.|.+++++.|.|||++||+++++.. ||+|++|++|+++..|+++++.
T Consensus       152 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~~~  230 (269)
T PRK13648        152 AIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAME-ADHVIVMNKGTVYKEGTPTEIF  230 (269)
T ss_pred             HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhc-CCEEEEEECCEEEEecCHHHHh
Confidence            999999999999999999999999999999999999876558999999999999985 9999999999999999988875


Q ss_pred             Hh
Q 022663          240 EL  241 (294)
Q Consensus       240 ~~  241 (294)
                      +.
T Consensus       231 ~~  232 (269)
T PRK13648        231 DH  232 (269)
T ss_pred             cC
Confidence            43

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=7.7e-45  Score=323.44  Aligned_cols=216  Identities=20%  Similarity=0.211  Sum_probs=166.3

Q ss_pred             cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccC----CCceEEecCCccccccc
Q 022663           11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVG----GRDVVQVLNRSSFHDTQ   86 (294)
Q Consensus        11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~----~~g~i~~~~~~~~~~~~   86 (294)
                      .++|+++|++++|++   ..+|+|+||+|++||+++|+||||||||||+|+|+|++.|+    .+|.+.++|.+......
T Consensus         5 ~~~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~   81 (254)
T PRK14273          5 EAIIETENLNLFYTD---FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNF   81 (254)
T ss_pred             CceEEEeeeEEEeCC---ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccc
Confidence            458999999999975   46999999999999999999999999999999999998763    37899888864321000


Q ss_pred             ccccCCcccccccccccccccCc-ccccccccHHH-HhhcC--CC-Cc----HHHHHHHHHHcCCC------cccccccC
Q 022663           87 LVCSGDLSYLGGSWSKTVGSAGE-IPLQGDFSAEH-MIFGV--EG-SD----PVRRERLIELLDID------LQWRMHKV  151 (294)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~--~~-~~----~~~~~~~l~~l~l~------~~~~~~~L  151 (294)
                           ..    ..++..++++++ ..++. .+..+ +.++.  .. ..    .+.+..+++.+++.      .++++.+|
T Consensus        82 -----~~----~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~L  151 (254)
T PRK14273         82 -----DI----LELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSL  151 (254)
T ss_pred             -----cH----HHHhhceEEEeecccccc-CcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccC
Confidence                 00    001122333332 12222 34433 32221  11 11    22345667777751      46788999


Q ss_pred             CHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEe
Q 022663          152 SDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRR  231 (294)
Q Consensus       152 SgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~  231 (294)
                      ||||||||+|||||+.+|++|||||||+|||+.++..++++|.++. + +.|||++|||++++..+|||+++|++|+++.
T Consensus       152 SgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~  229 (254)
T PRK14273        152 SGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK-E-SYTIIIVTHNMQQAGRISDRTAFFLNGCIEE  229 (254)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence            9999999999999999999999999999999999999999999984 3 7899999999999999999999999999999


Q ss_pred             cccHHHHHHh
Q 022663          232 AEKLAELDEL  241 (294)
Q Consensus       232 ~g~~~~~~~~  241 (294)
                      .|+++++...
T Consensus       230 ~g~~~~~~~~  239 (254)
T PRK14273        230 ESSTDELFFN  239 (254)
T ss_pred             eCCHHHHHhC
Confidence            9999888654

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=6.3e-45  Score=328.80  Aligned_cols=217  Identities=23%  Similarity=0.304  Sum_probs=168.5

Q ss_pred             ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCC--ceEEecCCcccccccccc
Q 022663           12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGR--DVVQVLNRSSFHDTQLVC   89 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~--g~i~~~~~~~~~~~~~~~   89 (294)
                      .+|+++|++++|++. .+++|+++||+|++||+++|+||||||||||+++|+|++.|+.+  |.+.++|.+.......  
T Consensus         4 ~~l~i~~l~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~--   80 (282)
T PRK13640          4 NIVEFKHVSFTYPDS-KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVW--   80 (282)
T ss_pred             ceEEEEEEEEEcCCC-CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHH--
Confidence            359999999999642 24699999999999999999999999999999999999888632  8998888654211000  


Q ss_pred             cCCcccccccccccccccCccc--ccccccHHH-HhhcC--CCCcH----HHHHHHHHHcCCC--cccccccCCHHHHHH
Q 022663           90 SGDLSYLGGSWSKTVGSAGEIP--LQGDFSAEH-MIFGV--EGSDP----VRRERLIELLDID--LQWRMHKVSDGQRRR  158 (294)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~--~~~~~----~~~~~~l~~l~l~--~~~~~~~LSgGqkqR  158 (294)
                               .....++++++.+  .+...+..+ +.+..  .....    +++.++++.+++.  .++++.+|||||+||
T Consensus        81 ---------~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qr  151 (282)
T PRK13640         81 ---------DIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQR  151 (282)
T ss_pred             ---------HHHhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHH
Confidence                     0111233333321  222334433 33221  11111    2356778888885  578899999999999


Q ss_pred             HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663          159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL  238 (294)
Q Consensus       159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~  238 (294)
                      ++|||||+.+|++|||||||+|||+.++..+.++|.++.++.|.|||++||+++++. +||++++|++|+++..|+++++
T Consensus       152 v~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~  230 (282)
T PRK13640        152 VAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEAN-MADQVLVLDDGKLLAQGSPVEI  230 (282)
T ss_pred             HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEEEEeCCHHHH
Confidence            999999999999999999999999999999999999987656899999999999985 7999999999999999999887


Q ss_pred             HHh
Q 022663          239 DEL  241 (294)
Q Consensus       239 ~~~  241 (294)
                      ...
T Consensus       231 ~~~  233 (282)
T PRK13640        231 FSK  233 (282)
T ss_pred             hcC
Confidence            553

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=100.00  E-value=8.4e-45  Score=321.92  Aligned_cols=214  Identities=23%  Similarity=0.253  Sum_probs=165.5

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccC----CCceEEecCCccccccccc
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVG----GRDVVQVLNRSSFHDTQLV   88 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~----~~g~i~~~~~~~~~~~~~~   88 (294)
                      +|+++||+++|++   ..+|+|+||+|++||+++|+||||||||||+++|+|++.|+    .+|.+.++|.+......  
T Consensus         1 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~--   75 (247)
T TIGR00972         1 AIEIENLNLFYGE---KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKI--   75 (247)
T ss_pred             CEEEEEEEEEECC---eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEcccccc--
Confidence            4889999999975   46999999999999999999999999999999999998764    27888888865321000  


Q ss_pred             ccCCcccccccccccccccCc-ccccccccHHH-Hhhc--CCC-Cc----HHHHHHHHHHcCCC------cccccccCCH
Q 022663           89 CSGDLSYLGGSWSKTVGSAGE-IPLQGDFSAEH-MIFG--VEG-SD----PVRRERLIELLDID------LQWRMHKVSD  153 (294)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~--~~~-~~----~~~~~~~l~~l~l~------~~~~~~~LSg  153 (294)
                         .    ....+..++++++ ..++. .+..+ +.+.  ... ..    .+....+++.+++.      .++++.+|||
T Consensus        76 ---~----~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSg  147 (247)
T TIGR00972        76 ---D----VVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSG  147 (247)
T ss_pred             ---c----hHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCH
Confidence               0    0001122333333 22333 34333 3221  111 11    13456678888874      3678899999


Q ss_pred             HHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecc
Q 022663          154 GQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAE  233 (294)
Q Consensus       154 GqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g  233 (294)
                      ||||||+|||||+.+|++|||||||+|||+.++..++++|.++++  +.|||+||||++++..+||++++|++|+++..+
T Consensus       148 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~  225 (247)
T TIGR00972       148 GQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK--KYTIVIVTHNMQQAARISDRTAFFYDGELVEYG  225 (247)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--cCeEEEEecCHHHHHHhCCEEEEEECCEEEEeC
Confidence            999999999999999999999999999999999999999998864  489999999999999999999999999999999


Q ss_pred             cHHHHHHh
Q 022663          234 KLAELDEL  241 (294)
Q Consensus       234 ~~~~~~~~  241 (294)
                      +++++.+.
T Consensus       226 ~~~~~~~~  233 (247)
T TIGR00972       226 PTEQIFTN  233 (247)
T ss_pred             CHHHHHhC
Confidence            98887653

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=2.8e-45  Score=323.14  Aligned_cols=224  Identities=22%  Similarity=0.261  Sum_probs=182.2

Q ss_pred             ccEEEcceEEEcCCCCC---------------------CCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCC
Q 022663           12 NSIKVCGMQFSYEGNDK---------------------PPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGG   70 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~~---------------------~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~   70 (294)
                      ..|+++||++-|+.+..                     ..-++|+||+|++|||++|+|-||||||||+|+|.+++.|+ 
T Consensus         3 ~~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept-   81 (386)
T COG4175           3 VKIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPT-   81 (386)
T ss_pred             ceEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCC-
Confidence            36899999999974210                     12467999999999999999999999999999999999997 


Q ss_pred             CceEEecCCcccccccccccCCcccccccccccccccCc-ccccccccHH-HHhhcCC--CCc----HHHHHHHHHHcCC
Q 022663           71 RDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGE-IPLQGDFSAE-HMIFGVE--GSD----PVRRERLIELLDI  142 (294)
Q Consensus        71 ~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~--~~~----~~~~~~~l~~l~l  142 (294)
                      .|.+.++|.+...-...       -+....+..++++++ +.+++..+.. +..|+++  +..    .++..++++..++
T Consensus        82 ~G~ilv~g~di~~~~~~-------~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL  154 (386)
T COG4175          82 RGEILVDGKDIAKLSAA-------ELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGL  154 (386)
T ss_pred             CceEEECCcchhcCCHH-------HHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCc
Confidence            99999999875431110       011112344555555 5566666654 4456653  222    2345567788888


Q ss_pred             C--cccccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhce
Q 022663          143 D--LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATH  220 (294)
Q Consensus       143 ~--~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~  220 (294)
                      .  .+++|++|||||||||.|||||+.+|+|||+|||||+|||--+.++.+.|.++.++.++|||+||||++++.++.||
T Consensus       155 ~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~r  234 (386)
T COG4175         155 EGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDR  234 (386)
T ss_pred             hhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccce
Confidence            5  68899999999999999999999999999999999999999999999999999988899999999999999999999


Q ss_pred             EEEeeCCeEEecccHHHHHHhhh
Q 022663          221 LAYIQDGELRRAEKLAELDELRN  243 (294)
Q Consensus       221 v~~l~~G~i~~~g~~~~~~~~~~  243 (294)
                      |.+|++|+|+..|+++++...+.
T Consensus       235 IaimkdG~ivQ~Gtp~eIl~~PA  257 (386)
T COG4175         235 IAIMKDGEIVQVGTPEEILLNPA  257 (386)
T ss_pred             EEEecCCeEEEeCCHHHHHcCcc
Confidence            99999999999999999987654

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=5.4e-45  Score=322.17  Aligned_cols=217  Identities=23%  Similarity=0.342  Sum_probs=166.6

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      +|+++|++++|++   +.+|+|+||+|++||+++|+||||||||||+|+|+|++.|+ +|.+.++|.+........ ...
T Consensus         2 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~~-~~~   76 (242)
T PRK11124          2 SIQLNGINCFYGA---HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPR-SGTLNIAGNHFDFSKTPS-DKA   76 (242)
T ss_pred             EEEEEeeEEEECC---eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCEecccccccc-hhh
Confidence            6899999999975   57999999999999999999999999999999999998776 899998886531000000 000


Q ss_pred             cccccccccccccccCc-ccccccccHHHHh-hc---CCCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHH
Q 022663           93 LSYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-FG---VEGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQI  161 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~---~~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~l  161 (294)
                      .    ..++..++++++ ..++...+..+++ +.   .....    .....++++.+++.  .++.+.+||||||||++|
T Consensus        77 ~----~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~l  152 (242)
T PRK11124         77 I----RELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAI  152 (242)
T ss_pred             H----HHHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHH
Confidence            0    001122333333 2233344443332 11   11111    22346677888885  478899999999999999


Q ss_pred             HHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHH
Q 022663          162 CMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELD  239 (294)
Q Consensus       162 AraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  239 (294)
                      ||||+.+|++|||||||+|||+.++..+.+.|.++.+ .|.|||++|||++++..+||++++|++|+++..++++++.
T Consensus       153 aral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~  229 (242)
T PRK11124        153 ARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAE-TGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFT  229 (242)
T ss_pred             HHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhc
Confidence            9999999999999999999999999999999998754 5899999999999999999999999999999999887753

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=100.00  E-value=1.4e-44  Score=321.21  Aligned_cols=203  Identities=18%  Similarity=0.287  Sum_probs=162.3

Q ss_pred             ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663           12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG   91 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~   91 (294)
                      ++|+++||+++|++   +.+|+++||+|++||+++|+||||||||||+++|+|++.|+ +|.+.+.+..           
T Consensus         3 ~~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~-~G~i~~~~~~-----------   67 (251)
T PRK09544          3 SLVSLENVSVSFGQ---RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPD-EGVIKRNGKL-----------   67 (251)
T ss_pred             cEEEEeceEEEECC---ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCcc-----------
Confidence            47999999999975   46999999999999999999999999999999999998876 8888776521           


Q ss_pred             CcccccccccccccccCccccccc--ccHHHHhhcCCCCcHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHHHcc
Q 022663           92 DLSYLGGSWSKTVGSAGEIPLQGD--FSAEHMIFGVEGSDPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMGLLH  167 (294)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL~~  167 (294)
                      .+.+.++..          .++..  .+..++.........++...+++.+++.  .++++.+|||||+|||+|||||+.
T Consensus        68 ~i~~v~q~~----------~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~  137 (251)
T PRK09544         68 RIGYVPQKL----------YLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLN  137 (251)
T ss_pred             CEEEecccc----------ccccccChhHHHHHhccccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhc
Confidence            123332211          11111  1222222111112234566788888885  477899999999999999999999


Q ss_pred             CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHH
Q 022663          168 PFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDE  240 (294)
Q Consensus       168 ~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  240 (294)
                      +|++|||||||+|||+.++..+++.|.++.++.|.|||++|||++++..+||+|++|++ +++..|+++++.+
T Consensus       138 ~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~  209 (251)
T PRK09544        138 RPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSL  209 (251)
T ss_pred             CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhC
Confidence            99999999999999999999999999998765589999999999999999999999965 7889999888754

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=100.00  E-value=2.3e-45  Score=317.93  Aligned_cols=200  Identities=32%  Similarity=0.399  Sum_probs=153.7

Q ss_pred             EEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcc
Q 022663           15 KVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLS   94 (294)
Q Consensus        15 ~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~   94 (294)
                      +++|++++|++. .+++|+++||+|++|++++|+||||||||||+++|+|++.|+ +|.+.++|.+.......       
T Consensus         1 ~~~~l~~~~~~~-~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~-------   71 (211)
T cd03225           1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPT-SGEVLVDGKDLTKLSLK-------   71 (211)
T ss_pred             CceeEEEecCCC-CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC-CceEEECCEEcccCCHH-------
Confidence            368999999641 146999999999999999999999999999999999998876 89998887643211000       


Q ss_pred             cccccccccccccCccc--ccccccHHHH-hhcC--CCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHH
Q 022663           95 YLGGSWSKTVGSAGEIP--LQGDFSAEHM-IFGV--EGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQICM  163 (294)
Q Consensus        95 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAr  163 (294)
                          .+...++++++.+  .+...+..++ .+..  ....    .....++++.+++.  .++++.+|||||||||+|||
T Consensus        72 ----~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~lar  147 (211)
T cd03225          72 ----ELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAG  147 (211)
T ss_pred             ----HHHhhceEEecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHH
Confidence                0112233333221  1222333332 2211  1111    22456678888885  57889999999999999999


Q ss_pred             HHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCe
Q 022663          164 GLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGE  228 (294)
Q Consensus       164 aL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~  228 (294)
                      ||+.+|++|||||||+|||+.++..+++.|.+++++ |.|||++|||++++..+||++++|++|+
T Consensus       148 al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~-~~tvi~~sH~~~~~~~~~d~i~~l~~G~  211 (211)
T cd03225         148 VLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAE-GKTIIIVTHDLDLLLELADRVIVLEDGK  211 (211)
T ss_pred             HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence            999999999999999999999999999999998764 8999999999999999999999999984

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=100.00  E-value=3.4e-45  Score=316.96  Aligned_cols=201  Identities=22%  Similarity=0.400  Sum_probs=157.9

Q ss_pred             EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCc
Q 022663           14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL   93 (294)
Q Consensus        14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~   93 (294)
                      |+++|++++|++   .++|+|+||+|++| +++|+||||||||||+++|+|++.|+ +|.+.++|.+.....        
T Consensus         1 i~~~~~~~~~~~---~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~-~G~i~~~g~~~~~~~--------   67 (211)
T cd03264           1 LQLENLTKRYGK---KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPS-SGTIRIDGQDVLKQP--------   67 (211)
T ss_pred             CEEEEEEEEECC---EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCC-ccEEEECCCccccch--------
Confidence            578999999965   47999999999999 99999999999999999999998876 899998886532110        


Q ss_pred             ccccccccccccccCc-ccccccccHHHH-hhc--CCCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHH
Q 022663           94 SYLGGSWSKTVGSAGE-IPLQGDFSAEHM-IFG--VEGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQICM  163 (294)
Q Consensus        94 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~--~~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAr  163 (294)
                          ..+...++++++ ..++...+..++ .+.  .....    .+...++++.+++.  .++++.+|||||||||+|||
T Consensus        68 ----~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~  143 (211)
T cd03264          68 ----QKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQ  143 (211)
T ss_pred             ----HHHHhheEEecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHH
Confidence                011122333332 223333444332 221  11111    23456778888885  47789999999999999999


Q ss_pred             HHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecc
Q 022663          164 GLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAE  233 (294)
Q Consensus       164 aL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g  233 (294)
                      ||+.+|++|||||||+|||+.++..+.++|.++++  +.|||++|||++++.++||++++|++|+++..|
T Consensus       144 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g  211 (211)
T cd03264         144 ALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE--DRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG  211 (211)
T ss_pred             HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC--CCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence            99999999999999999999999999999998864  589999999999999999999999999998654

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=6.8e-45  Score=327.26  Aligned_cols=214  Identities=26%  Similarity=0.294  Sum_probs=165.3

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      ||+++||+++|++  ++.+|+|+||+|++||+++|+||||||||||+++|+|++.|+ .|.+.++|.+.......     
T Consensus         1 ml~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~~~~-----   72 (274)
T PRK13644          1 MIRLENVSYSYPD--GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQ-KGKVLVSGIDTGDFSKL-----   72 (274)
T ss_pred             CEEEEEEEEEcCC--CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CceEEECCEECCccccH-----
Confidence            4889999999953  246999999999999999999999999999999999998876 89999888653211000     


Q ss_pred             cccccccccccccccCccc--ccccccHH-HHhhcCC--CCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHH
Q 022663           93 LSYLGGSWSKTVGSAGEIP--LQGDFSAE-HMIFGVE--GSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQI  161 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~--~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~l  161 (294)
                           ..+...++++++.+  .+...+.. ++.+...  ...    .+.+.++++.+++.  .++++.+|||||+|||+|
T Consensus        73 -----~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~l  147 (274)
T PRK13644         73 -----QGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVAL  147 (274)
T ss_pred             -----HHHHhheEEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHH
Confidence                 00111233333221  12223333 3322211  111    23456678888885  478899999999999999


Q ss_pred             HHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHHh
Q 022663          162 CMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDEL  241 (294)
Q Consensus       162 AraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  241 (294)
                      ||||+.+|++|||||||+|||+.++..+++.|.++.+ .|.|||++|||++++. .||+|++|++|+++..|+++++...
T Consensus       148 aral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~g~til~~tH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~~  225 (274)
T PRK13644        148 AGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHE-KGKTIVYITHNLEELH-DADRIIVMDRGKIVLEGEPENVLSD  225 (274)
T ss_pred             HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHh-hCCEEEEEECCEEEEECCHHHHhcC
Confidence            9999999999999999999999999999999998864 5899999999999985 6999999999999999998887543

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=100.00  E-value=8.8e-45  Score=318.00  Aligned_cols=211  Identities=22%  Similarity=0.279  Sum_probs=159.3

Q ss_pred             ccEEEcceEEEcCCCCC-CCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663           12 NSIKVCGMQFSYEGNDK-PPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS   90 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~~-~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~   90 (294)
                      ++|+++||+++|++... .++|+|+||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|.+......... 
T Consensus         5 ~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~-~G~i~~~g~~~~~~~~~~~-   82 (228)
T PRK10584          5 NIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS-SGEVSLVGQPLHQMDEEAR-   82 (228)
T ss_pred             ceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC-CeeEEECCEEcccCCHHHH-
Confidence            58999999999964211 25899999999999999999999999999999999998876 8999888764321100000 


Q ss_pred             CCcccccccccccccccCc-ccccccccHHHHh-hc--CCCC----cHHHHHHHHHHcCCC--cccccccCCHHHHHHHH
Q 022663           91 GDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-FG--VEGS----DPVRRERLIELLDID--LQWRMHKVSDGQRRRVQ  160 (294)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~--~~~~----~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~  160 (294)
                         .   ......++++++ ..++...+..+.+ +.  ....    ..+++.++++.+++.  .++++.+||||||||++
T Consensus        83 ---~---~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~  156 (228)
T PRK10584         83 ---A---KLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVA  156 (228)
T ss_pred             ---H---HHHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHH
Confidence               0   000012222222 2233333433322 21  1111    123456778888885  47789999999999999


Q ss_pred             HHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEe
Q 022663          161 ICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRR  231 (294)
Q Consensus       161 lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~  231 (294)
                      |||||+.+|++|||||||+|||+.++..+.+.|.+++++.|.|||++|||++++. .||++++|++|++++
T Consensus       157 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~i~~l~~g~i~~  226 (228)
T PRK10584        157 LARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAA-RCDRRLRLVNGQLQE  226 (228)
T ss_pred             HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEEEe
Confidence            9999999999999999999999999999999999987666899999999999885 599999999999865

>PRK10908 cell division protein FtsE; Provisional

Probab=100.00  E-value=5.1e-45  Score=318.32  Aligned_cols=207  Identities=21%  Similarity=0.272  Sum_probs=158.2

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      ||+++|++++|++  ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|.+.++|.+.......    .
T Consensus         1 ~l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~i~~~~~~----~   73 (222)
T PRK10908          1 MIRFEHVSKAYLG--GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPS-AGKIWFSGHDITRLKNR----E   73 (222)
T ss_pred             CEEEEeeEEEecC--CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCEEcccCChh----H
Confidence            4899999999942  257999999999999999999999999999999999998876 89998888643210000    0


Q ss_pred             cccccccccccccccCc-ccccccccHHH-HhhcC--CCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHHH
Q 022663           93 LSYLGGSWSKTVGSAGE-IPLQGDFSAEH-MIFGV--EGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQIC  162 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lA  162 (294)
                      .    ..++..++++++ ..++...+..+ +.+..  ....    ...+.++++.+++.  .++.+.+||||||||++||
T Consensus        74 ~----~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la  149 (222)
T PRK10908         74 V----PFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIA  149 (222)
T ss_pred             H----HHHHhheEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHH
Confidence            0    001122333333 12223334333 32221  1111    12345678888875  4778999999999999999


Q ss_pred             HHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEe
Q 022663          163 MGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRR  231 (294)
Q Consensus       163 raL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~  231 (294)
                      |||+.+|++|||||||++||+.++..+.+.|.++++ .+.|||++|||++++..+||++++|++|+++.
T Consensus       150 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~  217 (222)
T PRK10908        150 RAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNR-VGVTVLMATHDIGLISRRSYRMLTLSDGHLHG  217 (222)
T ss_pred             HHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence            999999999999999999999999999999998865 48999999999999999999999999999854

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=100.00  E-value=6.2e-45  Score=317.40  Aligned_cols=209  Identities=22%  Similarity=0.290  Sum_probs=157.7

Q ss_pred             cEEEcceEEEcCCCC-CCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663           13 SIKVCGMQFSYEGND-KPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG   91 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~-~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~   91 (294)
                      +|+++||+++|++.. .+++|+++||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|.+.......    
T Consensus         1 ~l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~-~G~i~~~g~~~~~~~~~----   75 (221)
T TIGR02211         1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPT-SGEVLFNGQSLSKLSSN----   75 (221)
T ss_pred             CEEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEECCEEhhhcCHh----
Confidence            378999999996411 136999999999999999999999999999999999998876 89999887653211000    


Q ss_pred             CcccccccccccccccCc-ccccccccHHHHh-hcC--CCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHH
Q 022663           92 DLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-FGV--EGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQI  161 (294)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~l  161 (294)
                      ...   ......++++++ ..+++..+..+.+ +..  ....    .+.+.++++.+++.  .++.+.+|||||||||+|
T Consensus        76 ~~~---~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~l  152 (221)
T TIGR02211        76 ERA---KLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAI  152 (221)
T ss_pred             HHH---HHHHhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHH
Confidence            000   000012333333 2233334443332 211  1111    22456778888885  578899999999999999


Q ss_pred             HHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEE
Q 022663          162 CMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELR  230 (294)
Q Consensus       162 AraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~  230 (294)
                      ||||+.+|++|||||||+|||+.++..+.+.|.+++++.+.|||++|||++++.. ||++++|++|+++
T Consensus       153 aral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~-~d~v~~l~~G~i~  220 (221)
T TIGR02211       153 ARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKK-LDRVLEMKDGQLF  220 (221)
T ss_pred             HHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh-cCEEEEEeCCEec
Confidence            9999999999999999999999999999999999876568999999999999865 7999999999875

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=100.00  E-value=1.1e-44  Score=325.28  Aligned_cols=214  Identities=24%  Similarity=0.282  Sum_probs=165.7

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCC-------CceEEecCCcccccc
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGG-------RDVVQVLNRSSFHDT   85 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~-------~g~i~~~~~~~~~~~   85 (294)
                      ||+++|++++|++   +.+|+++||+|++||+++|+||||||||||+|+|+|++.|+.       +|.+.++|.+.....
T Consensus         1 ml~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~   77 (272)
T PRK13547          1 MLTADHLHVARRH---RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAID   77 (272)
T ss_pred             CeEEEEEEEEECC---EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCC
Confidence            4899999999975   579999999999999999999999999999999999987752       688888876432100


Q ss_pred             cccccCCcccccccccccccccCcc-cccccccHHHH-hhcCC------C-C---cHHHHHHHHHHcCCC--cccccccC
Q 022663           86 QLVCSGDLSYLGGSWSKTVGSAGEI-PLQGDFSAEHM-IFGVE------G-S---DPVRRERLIELLDID--LQWRMHKV  151 (294)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~------~-~---~~~~~~~~l~~l~l~--~~~~~~~L  151 (294)
                      ..           .+...++++++. ..+...+..++ .+...      . .   ..+....+++.+++.  .++++.+|
T Consensus        78 ~~-----------~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L  146 (272)
T PRK13547         78 AP-----------RLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTL  146 (272)
T ss_pred             HH-----------HHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccC
Confidence            00           001112222221 11222343332 22210      0 0   122346678888885  57889999


Q ss_pred             CHHHHHHHHHHHHHc---------cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEE
Q 022663          152 SDGQRRRVQICMGLL---------HPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLA  222 (294)
Q Consensus       152 SgGqkqRv~lAraL~---------~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~  222 (294)
                      ||||+|||+|||||+         .+|++|||||||++||+.++..+.++|.++.++.|.|||+||||++++.++||+++
T Consensus       147 SgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~  226 (272)
T PRK13547        147 SGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIA  226 (272)
T ss_pred             CHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEE
Confidence            999999999999999         59999999999999999999999999999876558999999999999999999999


Q ss_pred             EeeCCeEEecccHHHHHH
Q 022663          223 YIQDGELRRAEKLAELDE  240 (294)
Q Consensus       223 ~l~~G~i~~~g~~~~~~~  240 (294)
                      +|++|+++..++++++..
T Consensus       227 ~l~~G~i~~~g~~~~~~~  244 (272)
T PRK13547        227 MLADGAIVAHGAPADVLT  244 (272)
T ss_pred             EEECCeEEEecCHHHHcC
Confidence            999999999999887754

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.1e-44  Score=324.95  Aligned_cols=220  Identities=17%  Similarity=0.190  Sum_probs=166.0

Q ss_pred             CCCcccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcc--c--CCCceEEecCCcccc
Q 022663            8 NEKLNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHM--V--GGRDVVQVLNRSSFH   83 (294)
Q Consensus         8 ~~~~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~--~--~~~g~i~~~~~~~~~   83 (294)
                      +++.++|+++|++++|++   +.+|+++||+|++||+++|+||||||||||+++|+|+..  +  ...|.+.++|.+...
T Consensus        16 ~~~~~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~   92 (268)
T PRK14248         16 EAKEHILEVKDLSIYYGE---KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILD   92 (268)
T ss_pred             CCCCceEEEEEEEEEeCC---ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccc
Confidence            445678999999999975   579999999999999999999999999999999999753  2  248899888865321


Q ss_pred             cccccccCCcccccccccccccccCc-ccccccccHHHHhhcC--CCC-c----HHHHHHHHHHcCCC------cccccc
Q 022663           84 DTQLVCSGDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMIFGV--EGS-D----PVRRERLIELLDID------LQWRMH  149 (294)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~-~----~~~~~~~l~~l~l~------~~~~~~  149 (294)
                      ...     .    ...+...++++++ ..++.....+++.+..  ... .    ......+++.+++.      .++++.
T Consensus        93 ~~~-----~----~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~  163 (268)
T PRK14248         93 SNI-----N----VVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSAL  163 (268)
T ss_pred             ccc-----c----HHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcc
Confidence            000     0    0001112333332 1222222223332221  111 1    12344566666652      367889


Q ss_pred             cCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeE
Q 022663          150 KVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL  229 (294)
Q Consensus       150 ~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i  229 (294)
                      +||||||||++|||||+.+|++|||||||+|||+.++..+.++|.++.+  +.|||++|||++++..+||++++|++|++
T Consensus       164 ~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiii~tH~~~~~~~~~d~v~~l~~G~i  241 (268)
T PRK14248        164 SLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE--EYSIIIVTHNMQQALRVSDRTAFFLNGDL  241 (268)
T ss_pred             cCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCEEEEEEeCHHHHHHhCCEEEEEECCEE
Confidence            9999999999999999999999999999999999999999999998853  68999999999999999999999999999


Q ss_pred             EecccHHHHHHh
Q 022663          230 RRAEKLAELDEL  241 (294)
Q Consensus       230 ~~~g~~~~~~~~  241 (294)
                      +..++++++...
T Consensus       242 ~~~~~~~~~~~~  253 (268)
T PRK14248        242 VEYDQTEQIFTS  253 (268)
T ss_pred             EEeCCHHHHHhC
Confidence            999999887654

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.2e-44  Score=328.07  Aligned_cols=222  Identities=19%  Similarity=0.265  Sum_probs=167.1

Q ss_pred             ccEEEcceEEEcCCCC--CCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccc
Q 022663           12 NSIKVCGMQFSYEGND--KPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVC   89 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~--~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~   89 (294)
                      ..|+++||+++|++..  ..++|+|+||+|++||+++|+||||||||||+|+|+|++.|+ +|.+.++|.+......   
T Consensus         5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~i~~~~~---   80 (289)
T PRK13645          5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISE-TGQTIVGDYAIPANLK---   80 (289)
T ss_pred             ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CceEEECCEEcccccc---
Confidence            4699999999996521  024999999999999999999999999999999999998876 8999888764321000   


Q ss_pred             cCCcccccccccccccccCccc---ccccccH-HHHhhcC--CCCc----HHHHHHHHHHcCCC---cccccccCCHHHH
Q 022663           90 SGDLSYLGGSWSKTVGSAGEIP---LQGDFSA-EHMIFGV--EGSD----PVRRERLIELLDID---LQWRMHKVSDGQR  156 (294)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~--~~~~----~~~~~~~l~~l~l~---~~~~~~~LSgGqk  156 (294)
                        ... ....++..++++++.+   ++. .+. +++.+..  ....    ..++.++++.+++.   .++++.+||||||
T Consensus        81 --~~~-~~~~~~~~i~~v~q~~~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~  156 (289)
T PRK13645         81 --KIK-EVKRLRKEIGLVFQFPEYQLFQ-ETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQK  156 (289)
T ss_pred             --ccc-cHHHHhccEEEEEeCcchhhhh-hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHH
Confidence              000 0000111233333221   112 233 2332221  1111    12345677888883   4778999999999


Q ss_pred             HHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHH
Q 022663          157 RRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLA  236 (294)
Q Consensus       157 qRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~  236 (294)
                      |||+|||||+.+|++|||||||+|||+.++..++++|.++.++.|+|||+||||++++.++||++++|++|+++..|+++
T Consensus       157 qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~  236 (289)
T PRK13645        157 RRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPF  236 (289)
T ss_pred             HHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence            99999999999999999999999999999999999999987656899999999999999999999999999999999988


Q ss_pred             HHHHh
Q 022663          237 ELDEL  241 (294)
Q Consensus       237 ~~~~~  241 (294)
                      ++.+.
T Consensus       237 ~~~~~  241 (289)
T PRK13645        237 EIFSN  241 (289)
T ss_pred             HHhcC
Confidence            87543

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=8.8e-45  Score=326.08  Aligned_cols=218  Identities=23%  Similarity=0.286  Sum_probs=168.7

Q ss_pred             CcccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccc
Q 022663           10 KLNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVC   89 (294)
Q Consensus        10 ~~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~   89 (294)
                      +.++|+++|++++|++. ++++|+++||+|++||+++|+||||||||||+++|+|+..|+ +|.+.++|.+.......  
T Consensus         4 ~~~~l~~~nl~~~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~-~G~I~~~g~~i~~~~~~--   79 (271)
T PRK13632          4 KSVMIKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQ-SGEIKIDGITISKENLK--   79 (271)
T ss_pred             cceEEEEEeEEEEcCCC-CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CceEEECCEecCcCCHH--
Confidence            44689999999999631 257999999999999999999999999999999999998876 89999888654211000  


Q ss_pred             cCCcccccccccccccccCccc--ccccccHHH-HhhcC--CCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHH
Q 022663           90 SGDLSYLGGSWSKTVGSAGEIP--LQGDFSAEH-MIFGV--EGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRR  158 (294)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqR  158 (294)
                               .++..++++++.+  .+...+..+ +.+..  ....    .....++++.+++.  .++.+.+|||||+||
T Consensus        80 ---------~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr  150 (271)
T PRK13632         80 ---------EIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQR  150 (271)
T ss_pred             ---------HHhcceEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHH
Confidence                     0112233333221  222334333 32221  1111    12346678888885  578899999999999


Q ss_pred             HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663          159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL  238 (294)
Q Consensus       159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~  238 (294)
                      ++|||||+.+|++|||||||+|||+.++..++++|.+++++.+.|||++||+++++. +||++++|++|+++..|+++++
T Consensus       151 l~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~  229 (271)
T PRK13632        151 VAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAI-LADKVIVFSEGKLIAQGKPKEI  229 (271)
T ss_pred             HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHh-hCCEEEEEECCEEEEecCHHHH
Confidence            999999999999999999999999999999999999987654589999999999986 7999999999999999988876


Q ss_pred             HHh
Q 022663          239 DEL  241 (294)
Q Consensus       239 ~~~  241 (294)
                      ...
T Consensus       230 ~~~  232 (271)
T PRK13632        230 LNN  232 (271)
T ss_pred             hcC
Confidence            543

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=100.00  E-value=3.2e-45  Score=317.58  Aligned_cols=204  Identities=23%  Similarity=0.338  Sum_probs=156.2

Q ss_pred             EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCc
Q 022663           14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL   93 (294)
Q Consensus        14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~   93 (294)
                      |+++|++++|++  .+.+|+|+||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|.+.......    ..
T Consensus         1 l~~~~l~~~~~~--~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~i~~~~~~----~~   73 (214)
T cd03292           1 IEFINVTKTYPN--GTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPT-SGTIRVNGQDVSDLRGR----AI   73 (214)
T ss_pred             CEEEEEEEEeCC--CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC-ceEEEECCEEcccCCHH----HH
Confidence            468999999964  146999999999999999999999999999999999998776 88998887643211000    00


Q ss_pred             ccccccccccccccCc-ccccccccHHH-HhhcC--CCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHH
Q 022663           94 SYLGGSWSKTVGSAGE-IPLQGDFSAEH-MIFGV--EGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQICM  163 (294)
Q Consensus        94 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAr  163 (294)
                          ..++..++++++ ..+++..+..+ +.+..  ....    .++..++++.+++.  .++++.+||||||||++|||
T Consensus        74 ----~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lar  149 (214)
T cd03292          74 ----PYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIAR  149 (214)
T ss_pred             ----HHHHHheEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHH
Confidence                001122333333 22334344433 22211  1111    23456778888885  47788999999999999999


Q ss_pred             HHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeE
Q 022663          164 GLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL  229 (294)
Q Consensus       164 aL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i  229 (294)
                      ||+.+|++|||||||++||+.++..+.+.|.++.+ .|.|||++|||++++..+||++++|++|++
T Consensus       150 al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~~tiiivtH~~~~~~~~~d~i~~l~~G~~  214 (214)
T cd03292         150 AIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINK-AGTTVVVATHAKELVDTTRHRVIALERGKL  214 (214)
T ss_pred             HHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence            99999999999999999999999999999998854 489999999999999999999999999974

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=100.00  E-value=3.8e-44  Score=319.07  Aligned_cols=215  Identities=20%  Similarity=0.253  Sum_probs=166.5

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccC---CCceEEecCCcccccccccc
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVG---GRDVVQVLNRSSFHDTQLVC   89 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~---~~g~i~~~~~~~~~~~~~~~   89 (294)
                      +|+++||+++| +   +++|+++||+|.+||+++|+||||||||||+++|+|++.|.   .+|.+.++|.+.... . ..
T Consensus         4 ~l~~~~l~~~~-~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~-~-~~   77 (254)
T PRK10418          4 QIELRNIALQA-A---QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC-A-LR   77 (254)
T ss_pred             EEEEeCeEEEe-c---cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc-c-cc
Confidence            69999999999 4   46999999999999999999999999999999999998771   388998888653210 0 00


Q ss_pred             cCCcccccccccccccccCcccccccccHHHHh-h---cC-CCCcHHHHHHHHHHcCCC-----cccccccCCHHHHHHH
Q 022663           90 SGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMI-F---GV-EGSDPVRRERLIELLDID-----LQWRMHKVSDGQRRRV  159 (294)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~-~~~~~~~~~~~l~~l~l~-----~~~~~~~LSgGqkqRv  159 (294)
                      ...+.+.++...        ..+.+..+..+.. .   .. .....+...++++.+++.     .++.+.+|||||+|||
T Consensus        78 ~~~i~~v~q~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv  149 (254)
T PRK10418         78 GRKIATIMQNPR--------SAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRM  149 (254)
T ss_pred             cceEEEEecCCc--------cccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHH
Confidence            112333322110        0011112222211 1   01 111234567788888875     3678899999999999


Q ss_pred             HHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHH
Q 022663          160 QICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELD  239 (294)
Q Consensus       160 ~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  239 (294)
                      +|||||+.+|++|||||||+|||+.++..+.++|.+++++.|.|||++||+++++..+||++++|++|+++..++++++.
T Consensus       150 ~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~  229 (254)
T PRK10418        150 MIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLF  229 (254)
T ss_pred             HHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence            99999999999999999999999999999999999987666899999999999999999999999999999999998876


Q ss_pred             Hh
Q 022663          240 EL  241 (294)
Q Consensus       240 ~~  241 (294)
                      +.
T Consensus       230 ~~  231 (254)
T PRK10418        230 NA  231 (254)
T ss_pred             hC
Confidence            54

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=5.7e-45  Score=305.33  Aligned_cols=214  Identities=20%  Similarity=0.291  Sum_probs=169.4

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      ||+++|||++..+   +.+|+++||++.+||+.+|+||||||||||||.|+|...|+ +|.+.++|.+.......     
T Consensus         1 mi~a~nls~~~~G---r~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~-~G~v~~~g~~l~~~~~~-----   71 (259)
T COG4559           1 MIRAENLSYSLAG---RRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD-SGEVTLNGVPLNSWPPE-----   71 (259)
T ss_pred             CeeeeeeEEEeec---ceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCC-CCeEeeCCcChhhCCHH-----
Confidence            5899999999876   67999999999999999999999999999999999998887 89999988764321111     


Q ss_pred             cccccccccccccccCc-ccccccccHHHHh-hcCC----CCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHH
Q 022663           93 LSYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-FGVE----GSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQ  160 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~----~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~  160 (294)
                            ...+..+..++ ..+...+++.++. ++..    ...    ....++++...++.  ..+...+|||||||||.
T Consensus        72 ------~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVq  145 (259)
T COG4559          72 ------ELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQ  145 (259)
T ss_pred             ------HHHHHhhhcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHH
Confidence                  11111122222 2233345555543 2321    111    12246677777775  46778899999999999


Q ss_pred             HHHHHcc------CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEeccc
Q 022663          161 ICMGLLH------PFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEK  234 (294)
Q Consensus       161 lAraL~~------~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~  234 (294)
                      +||.|++      ++++|+||||||+||..++..++++.++++++ |..|+.|-||++.+..|||||++|++|+++..|+
T Consensus       146 lARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~-g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~  224 (259)
T COG4559         146 LARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLARE-GGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGS  224 (259)
T ss_pred             HHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhc-CCcEEEEEccchHHHHhhheeeeeeCCeEeecCC
Confidence            9999985      44699999999999999999999999999875 7999999999999999999999999999999999


Q ss_pred             HHHHHHhh
Q 022663          235 LAELDELR  242 (294)
Q Consensus       235 ~~~~~~~~  242 (294)
                      +++++..+
T Consensus       225 p~~vlt~E  232 (259)
T COG4559         225 PQDVLTDE  232 (259)
T ss_pred             HHHhcCHH
Confidence            99987653

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=100.00  E-value=1.1e-44  Score=322.88  Aligned_cols=211  Identities=25%  Similarity=0.355  Sum_probs=164.8

Q ss_pred             EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCc
Q 022663           14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL   93 (294)
Q Consensus        14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~   93 (294)
                      |+++|+++.|++   +.+|+|+||+|++||+++|+||||||||||+++|+|+++|+ .|.+.++|.+........     
T Consensus         2 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~-~G~i~~~g~~~~~~~~~~-----   72 (256)
T TIGR03873         2 LRLSRVSWSAGG---RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPD-AGTVDLAGVDLHGLSRRA-----   72 (256)
T ss_pred             ceEEeEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC-CCEEEECCEEcccCCHHH-----
Confidence            678999999975   57999999999999999999999999999999999998876 899988886532110000     


Q ss_pred             ccccccccccccccCc-ccccccccHHH-HhhcCC--------CC--cHHHHHHHHHHcCCC--cccccccCCHHHHHHH
Q 022663           94 SYLGGSWSKTVGSAGE-IPLQGDFSAEH-MIFGVE--------GS--DPVRRERLIELLDID--LQWRMHKVSDGQRRRV  159 (294)
Q Consensus        94 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~--------~~--~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv  159 (294)
                            ....++++++ ..++...+..+ +.++..        ..  ...+..++++.+++.  .++++.+|||||+||+
T Consensus        73 ------~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl  146 (256)
T TIGR03873        73 ------RARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRV  146 (256)
T ss_pred             ------HhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHH
Confidence                  0111222222 11222334333 222110        00  122456678888875  5788999999999999


Q ss_pred             HHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHH
Q 022663          160 QICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELD  239 (294)
Q Consensus       160 ~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  239 (294)
                      +|||||+.+|++|||||||+|||+.++..+.++|.++.+ .|.|||++|||++++..+||+|++|++|+++..|+.+++.
T Consensus       147 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  225 (256)
T TIGR03873       147 HVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAA-TGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVL  225 (256)
T ss_pred             HHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhh
Confidence            999999999999999999999999999999999998864 4899999999999999999999999999999999988764


Q ss_pred             H
Q 022663          240 E  240 (294)
Q Consensus       240 ~  240 (294)
                      .
T Consensus       226 ~  226 (256)
T TIGR03873       226 T  226 (256)
T ss_pred             C
Confidence            3

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1e-44  Score=327.15  Aligned_cols=218  Identities=28%  Similarity=0.412  Sum_probs=166.1

Q ss_pred             cEEEcceEEEcCCCC--CCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663           13 SIKVCGMQFSYEGND--KPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS   90 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~--~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~   90 (294)
                      .|+++||+++|++..  .+++|+|+||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|.+.......   
T Consensus         2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~-~G~i~~~g~~i~~~~~~---   77 (280)
T PRK13649          2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPT-QGSVRVDDTLITSTSKN---   77 (280)
T ss_pred             eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCEEccccccc---
Confidence            489999999996421  135999999999999999999999999999999999998886 89999888643210000   


Q ss_pred             CCcccccccccccccccCcc---cccccccH-HHHhhcC--CCCc----HHHHHHHHHHcCCC---cccccccCCHHHHH
Q 022663           91 GDLSYLGGSWSKTVGSAGEI---PLQGDFSA-EHMIFGV--EGSD----PVRRERLIELLDID---LQWRMHKVSDGQRR  157 (294)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~--~~~~----~~~~~~~l~~l~l~---~~~~~~~LSgGqkq  157 (294)
                      ...    ..++..++++++.   .++. .+. +++.+..  ....    .....++++.+++.   .++++.+|||||||
T Consensus        78 ~~~----~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~q  152 (280)
T PRK13649         78 KDI----KQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMR  152 (280)
T ss_pred             cCH----HHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHH
Confidence            000    0011123333322   1222 233 3332211  1111    12345677888884   37789999999999


Q ss_pred             HHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHH
Q 022663          158 RVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAE  237 (294)
Q Consensus       158 Rv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~  237 (294)
                      |++|||||+.+|++|||||||++||+.++..+.+.|.++.+ .+.|||++|||++++..+||++++|++|+++..|++++
T Consensus       153 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~  231 (280)
T PRK13649        153 RVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQ-SGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKD  231 (280)
T ss_pred             HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence            99999999999999999999999999999999999998865 48999999999999999999999999999999999888


Q ss_pred             HHH
Q 022663          238 LDE  240 (294)
Q Consensus       238 ~~~  240 (294)
                      +.+
T Consensus       232 ~~~  234 (280)
T PRK13649        232 IFQ  234 (280)
T ss_pred             Hhc
Confidence            754

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=100.00  E-value=1.4e-44  Score=315.76  Aligned_cols=205  Identities=22%  Similarity=0.341  Sum_probs=162.7

Q ss_pred             EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCc
Q 022663           14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL   93 (294)
Q Consensus        14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~   93 (294)
                      |+++|++++|++   +++|+++||+|++||+++|+||||||||||+++|+|+++|+ .|.+.++|.+.....    ...+
T Consensus         1 l~l~~v~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~~~~~~~~~----~~~~   72 (223)
T TIGR03740         1 LETKNLSKRFGK---QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT-SGEIIFDGHPWTRKD----LHKI   72 (223)
T ss_pred             CEEEeEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCEeccccc----cccE
Confidence            578999999975   57999999999999999999999999999999999998776 888888876431100    0112


Q ss_pred             ccccccccccccccCcccccccccHHHH-hhc--CCCCcHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHHHccC
Q 022663           94 SYLGGSWSKTVGSAGEIPLQGDFSAEHM-IFG--VEGSDPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMGLLHP  168 (294)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL~~~  168 (294)
                      .+.++          +..++...+..+. .+.  ..........++++.+++.  .++.+.+|||||+||++||||++.+
T Consensus        73 ~~~~q----------~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~  142 (223)
T TIGR03740        73 GSLIE----------SPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNH  142 (223)
T ss_pred             EEEcC----------CCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcC
Confidence            22211          1122333343332 211  1122344567788889885  5778999999999999999999999


Q ss_pred             CCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHH
Q 022663          169 FKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAE  237 (294)
Q Consensus       169 p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~  237 (294)
                      |++|||||||+|||+.++..++++|.++++ .|.|||++|||++++..+||++++|++|+++..+++.+
T Consensus       143 p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~  210 (223)
T TIGR03740       143 PKLLILDEPTNGLDPIGIQELRELIRSFPE-QGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK  210 (223)
T ss_pred             CCEEEECCCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence            999999999999999999999999998864 48999999999999999999999999999999888653

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=100.00  E-value=4.7e-45  Score=316.36  Aligned_cols=202  Identities=25%  Similarity=0.320  Sum_probs=156.4

Q ss_pred             EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCc
Q 022663           14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL   93 (294)
Q Consensus        14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~   93 (294)
                      |+++||+++|++   +++|+++||+|++|++++|+||||||||||+++|+|++.|+ +|.+.++|.+.......      
T Consensus         1 l~~~~l~~~~~~---~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~------   70 (213)
T cd03262           1 IEIKNLHKSFGD---FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPD-SGTIIIDGLKLTDDKKN------   70 (213)
T ss_pred             CEEEEEEEEECC---eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEECCEECCccchh------
Confidence            478999999975   47999999999999999999999999999999999998876 89999888643210000      


Q ss_pred             ccccccccccccccCc-ccccccccHHHHh-hc---CCCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHHH
Q 022663           94 SYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-FG---VEGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQIC  162 (294)
Q Consensus        94 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~---~~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lA  162 (294)
                         ...+...++++++ ..++...+..+++ +.   .....    ..+..++++.+++.  .++++.+|||||+||++||
T Consensus        71 ---~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la  147 (213)
T cd03262          71 ---INELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIA  147 (213)
T ss_pred             ---HHHHHhcceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHH
Confidence               0001122333332 2233334433322 21   11111    22346678888885  5788999999999999999


Q ss_pred             HHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeE
Q 022663          163 MGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL  229 (294)
Q Consensus       163 raL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i  229 (294)
                      |||+.+|++|||||||+|||+.++..+.+.|.++++ .|.|||++|||++++.++||++++|++|++
T Consensus       148 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i  213 (213)
T cd03262         148 RALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAE-EGMTMVVVTHEMGFAREVADRVIFMDDGRI  213 (213)
T ss_pred             HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence            999999999999999999999999999999999875 589999999999999999999999999974

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.9e-44  Score=320.48  Aligned_cols=216  Identities=20%  Similarity=0.226  Sum_probs=164.5

Q ss_pred             ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcc--cC--CCceEEecCCcccccccc
Q 022663           12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHM--VG--GRDVVQVLNRSSFHDTQL   87 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~--~~--~~g~i~~~~~~~~~~~~~   87 (294)
                      ++|+++||+++|++   +.+|+++||+|++||+++|+||||||||||+++|+|+..  |+  .+|.+.++|.+...... 
T Consensus         4 ~~l~~~~l~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~-   79 (252)
T PRK14239          4 PILQVSDLSVYYNK---KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRT-   79 (252)
T ss_pred             ceEEEEeeEEEECC---eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCccc-
Confidence            47999999999975   469999999999999999999999999999999999853  42  37899888864321000 


Q ss_pred             cccCCcccccccccccccccCc-ccccccccH-HHHhhcC--CC-Cc----HHHHHHHHHHcCCC------cccccccCC
Q 022663           88 VCSGDLSYLGGSWSKTVGSAGE-IPLQGDFSA-EHMIFGV--EG-SD----PVRRERLIELLDID------LQWRMHKVS  152 (294)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~--~~-~~----~~~~~~~l~~l~l~------~~~~~~~LS  152 (294)
                              ....++..++++++ ..++. .+. +++.+..  .. ..    ......+++.+++.      .++.+.+||
T Consensus        80 --------~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS  150 (252)
T PRK14239         80 --------DTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLS  150 (252)
T ss_pred             --------chHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCC
Confidence                    00011122333333 12222 333 3332221  11 11    12344567777752      367889999


Q ss_pred             HHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEec
Q 022663          153 DGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRA  232 (294)
Q Consensus       153 gGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~  232 (294)
                      |||||||+|||||+.+|++|||||||+|||+.++..+.++|.++. + +.|||++|||++++..+||++++|++|+++..
T Consensus       151 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~  228 (252)
T PRK14239        151 GGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLK-D-DYTMLLVTRSMQQASRISDRTGFFLDGDLIEY  228 (252)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHh-h-CCeEEEEECCHHHHHHhCCEEEEEECCEEEEe
Confidence            999999999999999999999999999999999999999999875 3 68999999999999999999999999999999


Q ss_pred             ccHHHHHHhh
Q 022663          233 EKLAELDELR  242 (294)
Q Consensus       233 g~~~~~~~~~  242 (294)
                      |+++++.+..
T Consensus       229 g~~~~~~~~~  238 (252)
T PRK14239        229 NDTKQMFMNP  238 (252)
T ss_pred             CCHHHHHhCC
Confidence            9998886543

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.3e-44  Score=324.33  Aligned_cols=217  Identities=18%  Similarity=0.207  Sum_probs=166.6

Q ss_pred             cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCccc----CCCceEEecCCccccccc
Q 022663           11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMV----GGRDVVQVLNRSSFHDTQ   86 (294)
Q Consensus        11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~----~~~g~i~~~~~~~~~~~~   86 (294)
                      +++|+++||+++|++   +.+|+|+||+|++||+++|+||||||||||+++|+|++.|    ..+|.+.++|.+......
T Consensus        17 ~~~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~   93 (267)
T PRK14235         17 EIKMRARDVSVFYGE---KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRL   93 (267)
T ss_pred             CceEEEEeEEEEECC---EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECccccc
Confidence            468999999999975   5799999999999999999999999999999999998864    248999988865321000


Q ss_pred             ccccCCcccccccccccccccCc-ccccccccHHHHhhcC--CCC--c----HHHHHHHHHHcCCC------cccccccC
Q 022663           87 LVCSGDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMIFGV--EGS--D----PVRRERLIELLDID------LQWRMHKV  151 (294)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~--~----~~~~~~~l~~l~l~------~~~~~~~L  151 (294)
                           ..    ..++..++++++ ..++.....+++.+..  ...  .    ..++..+++.+++.      .++++.+|
T Consensus        94 -----~~----~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L  164 (267)
T PRK14235         94 -----DV----VELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGL  164 (267)
T ss_pred             -----ch----HHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccC
Confidence                 00    011122333332 2223222223333221  111  1    22346678888873      35678999


Q ss_pred             CHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEe
Q 022663          152 SDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRR  231 (294)
Q Consensus       152 SgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~  231 (294)
                      ||||||||+|||||+.+|++|||||||+|||+.++..+.++|.++.+  +.|||++|||++++..+||++++|++|+++.
T Consensus       165 SgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~--~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~  242 (267)
T PRK14235        165 SGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ--NYTIVIVTHSMQQAARVSQRTAFFHLGNLVE  242 (267)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc--CCeEEEEEcCHHHHHhhCCEEEEEECCEEEE
Confidence            99999999999999999999999999999999999999999998753  6899999999999999999999999999999


Q ss_pred             cccHHHHHHh
Q 022663          232 AEKLAELDEL  241 (294)
Q Consensus       232 ~g~~~~~~~~  241 (294)
                      .|+++++...
T Consensus       243 ~g~~~~~~~~  252 (267)
T PRK14235        243 VGDTEKMFTN  252 (267)
T ss_pred             eCCHHHHHhC
Confidence            9998887643

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.1e-44  Score=321.72  Aligned_cols=216  Identities=22%  Similarity=0.213  Sum_probs=165.9

Q ss_pred             cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcc--c--CCCceEEecCCccccccc
Q 022663           11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHM--V--GGRDVVQVLNRSSFHDTQ   86 (294)
Q Consensus        11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~--~--~~~g~i~~~~~~~~~~~~   86 (294)
                      ..+|+++|++++|++   .++|+|+||+|++||+++|+||||||||||+++|+|++.  |  ..+|.+.++|.+......
T Consensus        11 ~~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~   87 (260)
T PRK10744         11 PSKIQVRNLNFYYGK---FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQ   87 (260)
T ss_pred             CceEEEEEEEEEeCC---eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcccccc
Confidence            457999999999975   469999999999999999999999999999999999875  2  247999888865321000


Q ss_pred             ccccCCcccccccccccccccCc-ccccccccHH-HHhhcCC---CCc----HHHHHHHHHHcCCC------cccccccC
Q 022663           87 LVCSGDLSYLGGSWSKTVGSAGE-IPLQGDFSAE-HMIFGVE---GSD----PVRRERLIELLDID------LQWRMHKV  151 (294)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~---~~~----~~~~~~~l~~l~l~------~~~~~~~L  151 (294)
                               ....++..++++++ ..++. .+.. ++.+...   ...    .++..++++.+++.      .++++.+|
T Consensus        88 ---------~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L  157 (260)
T PRK10744         88 ---------DIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSL  157 (260)
T ss_pred             ---------chHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCC
Confidence                     00011122333332 12223 3333 3322211   111    13456677888762      46788999


Q ss_pred             CHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEe
Q 022663          152 SDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRR  231 (294)
Q Consensus       152 SgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~  231 (294)
                      ||||+||++|||||+.+|++|||||||+|||+.++..+.+.|.++. + +.|||++|||++++..+||++++|++|+++.
T Consensus       158 S~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~  235 (260)
T PRK10744        158 SGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK-Q-DYTVVIVTHNMQQAARCSDYTAFMYLGELIE  235 (260)
T ss_pred             CHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence            9999999999999999999999999999999999999999999884 3 6899999999999999999999999999999


Q ss_pred             cccHHHHHHh
Q 022663          232 AEKLAELDEL  241 (294)
Q Consensus       232 ~g~~~~~~~~  241 (294)
                      .|+.+++.+.
T Consensus       236 ~g~~~~~~~~  245 (260)
T PRK10744        236 FGNTDTIFTK  245 (260)
T ss_pred             eCCHHHHHhC
Confidence            9999887654

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2e-44  Score=324.75  Aligned_cols=216  Identities=20%  Similarity=0.282  Sum_probs=167.7

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      +|+++||+++|++....++|+|+||+|.+||+++|+|+||||||||+++|+|++.|. +|.+.++|.+.......     
T Consensus         4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~-~G~i~~~g~~i~~~~~~-----   77 (277)
T PRK13642          4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEF-EGKVKIDGELLTAENVW-----   77 (277)
T ss_pred             eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC-CCEEEECCEECCcCCHH-----
Confidence            799999999997421235999999999999999999999999999999999998876 89999988653211000     


Q ss_pred             cccccccccccccccCccc--ccccccH-HHHhhcCC--CCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHH
Q 022663           93 LSYLGGSWSKTVGSAGEIP--LQGDFSA-EHMIFGVE--GSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQI  161 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~--~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~l  161 (294)
                            .....++++++.+  .+...+. +++.++..  ...    .+++..+++.+++.  .++++.+|||||+||++|
T Consensus        78 ------~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~l  151 (277)
T PRK13642         78 ------NLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAV  151 (277)
T ss_pred             ------HHhcceEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHH
Confidence                  0112233333321  1222333 33332211  111    12346677888874  577899999999999999


Q ss_pred             HHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHHh
Q 022663          162 CMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDEL  241 (294)
Q Consensus       162 AraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  241 (294)
                      ||||+.+|++|||||||++||+.++..+++.|.+++++.|.|||++|||++++. .||+|++|++|+++..|+++++...
T Consensus       152 AraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~~~~  230 (277)
T PRK13642        152 AGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAA-SSDRILVMKAGEIIKEAAPSELFAT  230 (277)
T ss_pred             HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEeCCHHHHhcC
Confidence            999999999999999999999999999999999987666899999999999997 5999999999999999999887653

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.1e-44  Score=319.22  Aligned_cols=212  Identities=21%  Similarity=0.252  Sum_probs=165.0

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCccc--CCCceEEecCCccccccccccc
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMV--GGRDVVQVLNRSSFHDTQLVCS   90 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~--~~~g~i~~~~~~~~~~~~~~~~   90 (294)
                      +++++|+++.|++   +.+|+|+||+|++||+++|+||||||||||+++|+|++.+  ..+|.+.++|.+.......   
T Consensus         2 ~~~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~---   75 (246)
T PRK14269          2 IAKTTNLNLFYGK---KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVV---   75 (246)
T ss_pred             ceeeeeeEEEECC---EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHH---
Confidence            6899999999975   5799999999999999999999999999999999998742  2489999988754211000   


Q ss_pred             CCcccccccccccccccCc-ccccccccHHH-Hhhc--CCCC------cHHHHHHHHHHcCCC------cccccccCCHH
Q 022663           91 GDLSYLGGSWSKTVGSAGE-IPLQGDFSAEH-MIFG--VEGS------DPVRRERLIELLDID------LQWRMHKVSDG  154 (294)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~--~~~~------~~~~~~~~l~~l~l~------~~~~~~~LSgG  154 (294)
                              ..+..++++++ ..++. .+..+ +.+.  ....      ...+...+++.+++.      .++++.+||||
T Consensus        76 --------~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G  146 (246)
T PRK14269         76 --------ALRKNVGMVFQQPNVFV-KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGG  146 (246)
T ss_pred             --------HHhhhEEEEecCCcccc-ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHH
Confidence                    01122333333 22233 23333 3222  1111      112345678888873      36678999999


Q ss_pred             HHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEeccc
Q 022663          155 QRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEK  234 (294)
Q Consensus       155 qkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~  234 (294)
                      |+|||+|||||+.+|++|||||||+|||+.++..+.+.|.++. + +.|||++|||++++..+||++++|++|+++..|+
T Consensus       147 ~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~  224 (246)
T PRK14269        147 QQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELS-H-NLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGE  224 (246)
T ss_pred             HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh-C-CCEEEEEecCHHHHHhhCcEEEEEECCEEEEECC
Confidence            9999999999999999999999999999999999999999874 3 8999999999999999999999999999999999


Q ss_pred             HHHHHHh
Q 022663          235 LAELDEL  241 (294)
Q Consensus       235 ~~~~~~~  241 (294)
                      .+++...
T Consensus       225 ~~~~~~~  231 (246)
T PRK14269        225 SKEFFEN  231 (246)
T ss_pred             HHHHHhC
Confidence            8887653

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.4e-44  Score=321.53  Aligned_cols=221  Identities=21%  Similarity=0.287  Sum_probs=168.1

Q ss_pred             CcccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCC----CceEEecCCcccccc
Q 022663           10 KLNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGG----RDVVQVLNRSSFHDT   85 (294)
Q Consensus        10 ~~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~----~g~i~~~~~~~~~~~   85 (294)
                      ..++|+++|++++|++   ..+|+|+||+|++||+++|+|+||||||||+++|+|++.|++    .|.+.++|.+.....
T Consensus         4 ~~~~l~~~nl~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~   80 (261)
T PRK14258          4 LIPAIKVNNLSFYYDT---QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERR   80 (261)
T ss_pred             ccceEEEeeEEEEeCC---eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccc
Confidence            3457999999999965   469999999999999999999999999999999999987642    577777775431100


Q ss_pred             cccccCCcccccccccccccccCc-ccccccccHH-HHhhc--CCCC-c----HHHHHHHHHHcCCC------ccccccc
Q 022663           86 QLVCSGDLSYLGGSWSKTVGSAGE-IPLQGDFSAE-HMIFG--VEGS-D----PVRRERLIELLDID------LQWRMHK  150 (294)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~--~~~~-~----~~~~~~~l~~l~l~------~~~~~~~  150 (294)
                      .     ..    ..++..++++++ ..++. .+.. ++.+.  .... .    .....++++.+++.      .++++.+
T Consensus        81 ~-----~~----~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~  150 (261)
T PRK14258         81 V-----NL----NRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALD  150 (261)
T ss_pred             c-----ch----HHhhccEEEEecCCccCc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCccc
Confidence            0     00    001112333322 22333 3433 33221  1111 1    22345677777762      3677899


Q ss_pred             CCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeC----
Q 022663          151 VSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQD----  226 (294)
Q Consensus       151 LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~----  226 (294)
                      |||||+||++|||||+.+|++|||||||+|||+.++..+.+.|.+++++.+.|||+||||++++.++||+|++|++    
T Consensus       151 LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~  230 (261)
T PRK14258        151 LSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENR  230 (261)
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCc
Confidence            9999999999999999999999999999999999999999999988655689999999999999999999999999    


Q ss_pred             -CeEEecccHHHHHHhhh
Q 022663          227 -GELRRAEKLAELDELRN  243 (294)
Q Consensus       227 -G~i~~~g~~~~~~~~~~  243 (294)
                       |+++..++++++.+.+.
T Consensus       231 ~G~i~~~~~~~~~~~~~~  248 (261)
T PRK14258        231 IGQLVEFGLTKKIFNSPH  248 (261)
T ss_pred             CceEEEeCCHHHHHhCCC
Confidence             99999999999876543

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=100.00  E-value=1.3e-44  Score=324.58  Aligned_cols=220  Identities=19%  Similarity=0.312  Sum_probs=168.4

Q ss_pred             ccEEEcceEEEcCCC------CCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccc
Q 022663           12 NSIKVCGMQFSYEGN------DKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDT   85 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~------~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~   85 (294)
                      ++|+++||+++|++.      .++++|+|+||+|.+||+++|+||||||||||+++|+|++.|+ +|.+.++|.+.....
T Consensus         2 ~~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-sG~i~~~g~~~~~~~   80 (268)
T PRK10419          2 TLLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPS-QGNVSWRGEPLAKLN   80 (268)
T ss_pred             ceEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEECCEeccccC
Confidence            479999999999620      0257999999999999999999999999999999999998876 899998886432110


Q ss_pred             cccccCCcccccccccccccccCccc---ccccccHHHHh-hc---CCCC----cHHHHHHHHHHcCCC---cccccccC
Q 022663           86 QLVCSGDLSYLGGSWSKTVGSAGEIP---LQGDFSAEHMI-FG---VEGS----DPVRRERLIELLDID---LQWRMHKV  151 (294)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~---~~~~----~~~~~~~~l~~l~l~---~~~~~~~L  151 (294)
                      ...    .    ...+..++++++.+   +....+..+++ +.   ....    ......++++.+++.   .++.+.+|
T Consensus        81 ~~~----~----~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~L  152 (268)
T PRK10419         81 RAQ----R----KAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQL  152 (268)
T ss_pred             hhH----H----HHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccC
Confidence            000    0    00111222222211   22223333322 11   1111    122456788888884   47789999


Q ss_pred             CHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEe
Q 022663          152 SDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRR  231 (294)
Q Consensus       152 SgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~  231 (294)
                      ||||+||++|||||+.+|++|||||||+|||+.++..+.++|.+++++.+.|||++|||++++..+||++++|++|+++.
T Consensus       153 S~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~  232 (268)
T PRK10419        153 SGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVE  232 (268)
T ss_pred             ChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEee
Confidence            99999999999999999999999999999999999999999999876668999999999999999999999999999999


Q ss_pred             cccHHHHHH
Q 022663          232 AEKLAELDE  240 (294)
Q Consensus       232 ~g~~~~~~~  240 (294)
                      .|+++++..
T Consensus       233 ~g~~~~~~~  241 (268)
T PRK10419        233 TQPVGDKLT  241 (268)
T ss_pred             eCChhhccC
Confidence            999888754

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.3e-44  Score=321.30  Aligned_cols=216  Identities=20%  Similarity=0.248  Sum_probs=165.2

Q ss_pred             ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCC---cccC-CCceEEecCCcccccccc
Q 022663           12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGK---HMVG-GRDVVQVLNRSSFHDTQL   87 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~---~~~~-~~g~i~~~~~~~~~~~~~   87 (294)
                      ++|+++|+++.|++   +.+|+|+||+|++||+++|+||||||||||+++|+|+   +++. .+|.+.++|.+...... 
T Consensus         2 ~~l~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~-   77 (250)
T PRK14245          2 VKIDARDVNFWYGD---FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGV-   77 (250)
T ss_pred             cEEEEEEEEEEECC---EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccc-
Confidence            57999999999975   4699999999999999999999999999999999996   3332 37899988865421100 


Q ss_pred             cccCCcccccccccccccccCc-ccccccccH-HHHhhcC--CCC-c----HHHHHHHHHHcCCC------cccccccCC
Q 022663           88 VCSGDLSYLGGSWSKTVGSAGE-IPLQGDFSA-EHMIFGV--EGS-D----PVRRERLIELLDID------LQWRMHKVS  152 (294)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~--~~~-~----~~~~~~~l~~l~l~------~~~~~~~LS  152 (294)
                          ..    ..++..++++++ ..++. .+. +++.++.  ... .    .....++++.+++.      .++++.+||
T Consensus        78 ----~~----~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS  148 (250)
T PRK14245         78 ----QV----DELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALS  148 (250)
T ss_pred             ----cH----HHHhhheEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCC
Confidence                00    011122333333 12222 233 3332221  111 1    12345677878763      367788999


Q ss_pred             HHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEec
Q 022663          153 DGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRA  232 (294)
Q Consensus       153 gGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~  232 (294)
                      ||||||++|||||+.+|++|||||||+|||+.++..+.++|.++. + +.|||+||||++++..+||++++|++|+++..
T Consensus       149 ~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~  226 (250)
T PRK14245        149 GGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-K-DYTIVIVTHNMQQAARVSDKTAFFYMGEMVEY  226 (250)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHHHHHhhCCEEEEEECCEEEEE
Confidence            999999999999999999999999999999999999999999884 3 78999999999999999999999999999999


Q ss_pred             ccHHHHHHhh
Q 022663          233 EKLAELDELR  242 (294)
Q Consensus       233 g~~~~~~~~~  242 (294)
                      |+++++.+..
T Consensus       227 ~~~~~~~~~~  236 (250)
T PRK14245        227 DDTKKIFTNP  236 (250)
T ss_pred             CCHHHHhcCC
Confidence            9999886543

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.4e-44  Score=321.15  Aligned_cols=218  Identities=21%  Similarity=0.231  Sum_probs=166.1

Q ss_pred             CcccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcc--cC--CCceEEecCCcccccc
Q 022663           10 KLNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHM--VG--GRDVVQVLNRSSFHDT   85 (294)
Q Consensus        10 ~~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~--~~--~~g~i~~~~~~~~~~~   85 (294)
                      ++++|+++|+++.|++   +++|+|+||+|++||+++|+||||||||||+++|+|++.  |+  .+|.+.++|.+.....
T Consensus         9 ~~~~l~i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~   85 (259)
T PRK14274          9 KQEVYQINGMNLWYGQ---HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGK   85 (259)
T ss_pred             CCceEEEeeEEEEECC---eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccc
Confidence            4568999999999975   469999999999999999999999999999999999876  32  3789988886532100


Q ss_pred             cccccCCcccccccccccccccCc-ccccccccHHHHhhcC--CC-Cc----HHHHHHHHHHcCCC------cccccccC
Q 022663           86 QLVCSGDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMIFGV--EG-SD----PVRRERLIELLDID------LQWRMHKV  151 (294)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~-~~----~~~~~~~l~~l~l~------~~~~~~~L  151 (294)
                      .     ..    ..++..++++++ ..++.....+++.+..  .. ..    ..++.++++.+++.      .++++.+|
T Consensus        86 ~-----~~----~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~L  156 (259)
T PRK14274         86 V-----DL----VELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSL  156 (259)
T ss_pred             c-----CH----HHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccC
Confidence            0     00    001122333332 1222222223332221  11 11    12345567777762      36788999


Q ss_pred             CHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEe
Q 022663          152 SDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRR  231 (294)
Q Consensus       152 SgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~  231 (294)
                      ||||+||++|||||+.+|++|||||||+|||+.++..+.+.|.++. + +.|||+||||++++.++||++++|++|+++.
T Consensus       157 S~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~  234 (259)
T PRK14274        157 SGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLK-E-KYTIVIVTHNMQQAARVSDQTAFFYMGELVE  234 (259)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh-c-CCEEEEEEcCHHHHHHhCCEEEEEECCEEEE
Confidence            9999999999999999999999999999999999999999999874 3 6899999999999999999999999999999


Q ss_pred             cccHHHHHHh
Q 022663          232 AEKLAELDEL  241 (294)
Q Consensus       232 ~g~~~~~~~~  241 (294)
                      .|+++++...
T Consensus       235 ~g~~~~~~~~  244 (259)
T PRK14274        235 CNDTNKMFSN  244 (259)
T ss_pred             ECCHHHHhhC
Confidence            9999988654

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=100.00  E-value=1.7e-44  Score=318.97  Aligned_cols=211  Identities=21%  Similarity=0.192  Sum_probs=160.2

Q ss_pred             EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCc--ccCCCceEEecCCcccccccccccC
Q 022663           14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKH--MVGGRDVVQVLNRSSFHDTQLVCSG   91 (294)
Q Consensus        14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~--~~~~~g~i~~~~~~~~~~~~~~~~~   91 (294)
                      |+++||+++|++   +.+|+|+||+|++||+++|+||||||||||+|+|+|++  .|+ +|.+.++|.+.........  
T Consensus         1 l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~-~G~i~~~g~~~~~~~~~~~--   74 (243)
T TIGR01978         1 LKIKDLHVSVED---KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVT-SGTILFKGQDLLELEPDER--   74 (243)
T ss_pred             CeEeeEEEEECC---EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC-cceEEECCEecCCCCHHHh--
Confidence            578999999975   46999999999999999999999999999999999985  454 8999988865321100000  


Q ss_pred             CcccccccccccccccCc-ccccccccHHHHh-hc---CC------CCc----HHHHHHHHHHcCCC---cccccc-cCC
Q 022663           92 DLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-FG---VE------GSD----PVRRERLIELLDID---LQWRMH-KVS  152 (294)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~---~~------~~~----~~~~~~~l~~l~l~---~~~~~~-~LS  152 (294)
                              ....++++++ ..+++..+..+++ +.   ..      ..+    .++..++++.+++.   .++.+. +||
T Consensus        75 --------~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS  146 (243)
T TIGR01978        75 --------ARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFS  146 (243)
T ss_pred             --------hccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcC
Confidence                    0011222222 2233333333322 11   00      001    13456678888884   356676 599


Q ss_pred             HHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhh-hceEEEeeCCeEEe
Q 022663          153 DGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETW-ATHLAYIQDGELRR  231 (294)
Q Consensus       153 gGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~-~d~v~~l~~G~i~~  231 (294)
                      |||||||+|||||+.+|++|||||||++||+.++..+.++|.++.+ .|.|||+||||++++..+ ||++++|++|+++.
T Consensus       147 ~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~  225 (243)
T TIGR01978       147 GGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLRE-PDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVK  225 (243)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-CCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEE
Confidence            9999999999999999999999999999999999999999999864 589999999999999998 89999999999999


Q ss_pred             cccHHHHH
Q 022663          232 AEKLAELD  239 (294)
Q Consensus       232 ~g~~~~~~  239 (294)
                      .|+++++.
T Consensus       226 ~g~~~~~~  233 (243)
T TIGR01978       226 SGDVELAK  233 (243)
T ss_pred             ecCHHHhc
Confidence            99887543

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=100.00  E-value=1.3e-44  Score=343.46  Aligned_cols=225  Identities=24%  Similarity=0.304  Sum_probs=173.5

Q ss_pred             ccEEEcceEEEcCCCCC-CCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCC---CceEEecCCcccccccc
Q 022663           12 NSIKVCGMQFSYEGNDK-PPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGG---RDVVQVLNRSSFHDTQL   87 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~~-~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~---~g~i~~~~~~~~~~~~~   87 (294)
                      ++|+++||++.|..... ..+++||||+|.+||++||+|+|||||||+.++|.|++++.+   +|.+.++|.+.......
T Consensus         4 ~lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~   83 (539)
T COG1123           4 PLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSER   83 (539)
T ss_pred             ceEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHH
Confidence            38999999999965322 259999999999999999999999999999999999987653   78998888754321110


Q ss_pred             cccCCcccccccccccccccCccc---ccccccHHH----HhhcCC-CCc---HHHHHHHHHHcCCC--c--ccccccCC
Q 022663           88 VCSGDLSYLGGSWSKTVGSAGEIP---LQGDFSAEH----MIFGVE-GSD---PVRRERLIELLDID--L--QWRMHKVS  152 (294)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~----~~~~~~-~~~---~~~~~~~l~~l~l~--~--~~~~~~LS  152 (294)
                      ..       .......+++++|.+   +-+.++..+    ...... ...   ..+..++++.+++.  .  +++|++||
T Consensus        84 ~~-------r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLS  156 (539)
T COG1123          84 EM-------RKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLS  156 (539)
T ss_pred             HH-------HHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccC
Confidence            00       001112333333321   112222221    111111 111   23445677777874  2  35999999


Q ss_pred             HHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEec
Q 022663          153 DGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRA  232 (294)
Q Consensus       153 gGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~  232 (294)
                      |||||||+||+||+.+|++||+||||++||+..+.+|+++|++++++.|.++|+||||+..+.++||||++|++|++++.
T Consensus       157 GG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~  236 (539)
T COG1123         157 GGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVET  236 (539)
T ss_pred             chHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccHHHHHHhhh
Q 022663          233 EKLAELDELRN  243 (294)
Q Consensus       233 g~~~~~~~~~~  243 (294)
                      |+++++++.+.
T Consensus       237 G~~~~i~~~p~  247 (539)
T COG1123         237 GPTEEILSNPQ  247 (539)
T ss_pred             cCHHHHHhccC
Confidence            99999988754

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=100.00  E-value=3.4e-44  Score=311.28  Aligned_cols=202  Identities=24%  Similarity=0.416  Sum_probs=159.5

Q ss_pred             EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCc
Q 022663           14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL   93 (294)
Q Consensus        14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~   93 (294)
                      ++++||+++|+.     ++.|+||+|++||+++|+||||||||||+|+|+|++.|+ +|.+.++|.+......       
T Consensus         1 ~~~~~l~~~~~~-----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~~~~-------   67 (213)
T TIGR01277         1 LALDKVRYEYEH-----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPA-SGSIKVNDQSHTGLAP-------   67 (213)
T ss_pred             CeEEeeeEEeCC-----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC-CcEEEECCEEcccCCh-------
Confidence            468999999953     468999999999999999999999999999999998886 8999988865321100       


Q ss_pred             ccccccccccccccCc-ccccccccHHH-HhhcCC-C-----CcHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHH
Q 022663           94 SYLGGSWSKTVGSAGE-IPLQGDFSAEH-MIFGVE-G-----SDPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICM  163 (294)
Q Consensus        94 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~-~-----~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAr  163 (294)
                            ....++++++ ..++...+..+ +.+... .     ....+..++++.+++.  .++.+.+|||||+||++|||
T Consensus        68 ------~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~lar  141 (213)
T TIGR01277        68 ------YQRPVSMLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALAR  141 (213)
T ss_pred             ------hccceEEEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHH
Confidence                  1112333332 22334444433 322211 1     1123456688888885  57889999999999999999


Q ss_pred             HHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEeccc
Q 022663          164 GLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEK  234 (294)
Q Consensus       164 aL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~  234 (294)
                      ||+.+|++|||||||++||+.++..+.++|.++.++.+.|||+|||+++++..+||++++|++|+++..|+
T Consensus       142 al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~  212 (213)
T TIGR01277       142 CLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD  212 (213)
T ss_pred             HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence            99999999999999999999999999999999876568999999999999999999999999999988764

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=100.00  E-value=2.8e-44  Score=334.10  Aligned_cols=212  Identities=23%  Similarity=0.345  Sum_probs=166.7

Q ss_pred             ceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCccccc
Q 022663           18 GMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLG   97 (294)
Q Consensus        18 ~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~   97 (294)
                      ||+++|++   .. + ++||+|++||+++|+||||||||||+|+|+|++.|+ +|.+.++|.+......     ..  ..
T Consensus         4 ~l~~~~~~---~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~-~G~I~~~g~~i~~~~~-----~~--~~   70 (354)
T TIGR02142         4 RFSKRLGD---FS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPD-EGEIVLNGRTLFDSRK-----GI--FL   70 (354)
T ss_pred             EEEEEECC---EE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCEECccCcc-----cc--cc
Confidence            79999965   33 5 999999999999999999999999999999998886 8999988865421100     00  00


Q ss_pred             ccccccccccCc-ccccccccHHHH-hhcCCCC----cHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHHHccCC
Q 022663           98 GSWSKTVGSAGE-IPLQGDFSAEHM-IFGVEGS----DPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMGLLHPF  169 (294)
Q Consensus        98 ~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~----~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL~~~p  169 (294)
                      ...+..++++++ ..+++.++..++ .++....    ...+..++++.+++.  .++++.+|||||||||+|||||+.+|
T Consensus        71 ~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p  150 (354)
T TIGR02142        71 PPEKRRIGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSP  150 (354)
T ss_pred             chhhCCeEEEecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence            011223344433 334455555443 3332211    123457788888885  58889999999999999999999999


Q ss_pred             CEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHHhh
Q 022663          170 KVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDELR  242 (294)
Q Consensus       170 ~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~  242 (294)
                      ++|||||||+|||+.++..++++|.+++++.|.|||+||||++++..+||++++|++|+++..|+++++....
T Consensus       151 ~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~  223 (354)
T TIGR02142       151 RLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASP  223 (354)
T ss_pred             CEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCc
Confidence            9999999999999999999999999987666899999999999999999999999999999999998887654

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.5e-44  Score=320.61  Aligned_cols=217  Identities=19%  Similarity=0.185  Sum_probs=165.1

Q ss_pred             cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCccc----CCCceEEecCCccccccc
Q 022663           11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMV----GGRDVVQVLNRSSFHDTQ   86 (294)
Q Consensus        11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~----~~~g~i~~~~~~~~~~~~   86 (294)
                      .++|+++||+++|++   +.+|+|+||+|++||+++|+||||||||||+++|+|++.+    +.+|.+.++|.+......
T Consensus        11 ~~~l~i~nl~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~   87 (269)
T PRK14259         11 NIIISLQNVTISYGT---FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRV   87 (269)
T ss_pred             CceEEEEeEEEEECC---EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccC
Confidence            458999999999975   4699999999999999999999999999999999998763    248899888765321000


Q ss_pred             ccccCCcccccccccccccccCc-ccccccccHHH-HhhcC--CCCc---HHHHHHHHHHcCCC------cccccccCCH
Q 022663           87 LVCSGDLSYLGGSWSKTVGSAGE-IPLQGDFSAEH-MIFGV--EGSD---PVRRERLIELLDID------LQWRMHKVSD  153 (294)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~--~~~~---~~~~~~~l~~l~l~------~~~~~~~LSg  153 (294)
                           .    ...++..++++++ ..++.. +..+ +.+..  ....   .+...++++.+++.      .++++.+|||
T Consensus        88 -----~----~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~  157 (269)
T PRK14259         88 -----D----PVEVRRRIGMVFQQPNPFPK-SIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSG  157 (269)
T ss_pred             -----C----HHHHhhceEEEccCCccchh-hHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCH
Confidence                 0    0011122333333 222332 4333 32221  1111   22345567777652      4678899999


Q ss_pred             HHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeC-------
Q 022663          154 GQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQD-------  226 (294)
Q Consensus       154 GqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~-------  226 (294)
                      ||||||+|||||+.+|++|||||||+|||+.++..++++|.+++ + +.|||++|||++++..+||++++|++       
T Consensus       158 G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~-~-~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~  235 (269)
T PRK14259        158 GQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELK-K-NFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGS  235 (269)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhcCEEEEEecccccccc
Confidence            99999999999999999999999999999999999999999874 3 68999999999999999999999996       


Q ss_pred             ----CeEEecccHHHHHHhh
Q 022663          227 ----GELRRAEKLAELDELR  242 (294)
Q Consensus       227 ----G~i~~~g~~~~~~~~~  242 (294)
                          |++++.|+++++.+..
T Consensus       236 ~g~~g~~~~~~~~~~~~~~~  255 (269)
T PRK14259        236 GGKVGYLVEFNETKKIFNSP  255 (269)
T ss_pred             ccccceEEEeCCHHHHHhCc
Confidence                6789999999887643

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=100.00  E-value=2.8e-44  Score=315.78  Aligned_cols=211  Identities=25%  Similarity=0.306  Sum_probs=166.5

Q ss_pred             EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCc
Q 022663           14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL   93 (294)
Q Consensus        14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~   93 (294)
                      |+++|++++|++   +++|+++||+|++|++++|+||||||||||+++|+|+++|. .|.+.++|.+......  ...  
T Consensus         1 l~~~~l~~~~~~---~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~-~G~i~~~g~~~~~~~~--~~~--   72 (232)
T cd03300           1 IELENVSKFYGG---FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT-SGEILLDGKDITNLPP--HKR--   72 (232)
T ss_pred             CEEEeEEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC-ceEEEECCEEcCcCCh--hhc--
Confidence            468999999975   57999999999999999999999999999999999998876 8889888864321100  011  


Q ss_pred             ccccccccccccccCc-ccccccccHHHH-hhcC--CCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHH
Q 022663           94 SYLGGSWSKTVGSAGE-IPLQGDFSAEHM-IFGV--EGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQICM  163 (294)
Q Consensus        94 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAr  163 (294)
                               .++++++ ..++...+..++ .+..  ....    ......+++.+++.  .++.+.+||+||+||++|||
T Consensus        73 ---------~i~~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~lar  143 (232)
T cd03300          73 ---------PVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIAR  143 (232)
T ss_pred             ---------ceEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHH
Confidence                     1222222 223333343332 2211  1111    23456778888885  57788999999999999999


Q ss_pred             HHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHHh
Q 022663          164 GLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDEL  241 (294)
Q Consensus       164 aL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  241 (294)
                      ||+.+|++|||||||+|||+.++..+.+.|.++.++.|.|||++||+++++..+||++++|++|++...++.+++...
T Consensus       144 al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~  221 (232)
T cd03300         144 ALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEE  221 (232)
T ss_pred             HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhC
Confidence            999999999999999999999999999999998765589999999999999999999999999999999988776543

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.3e-44  Score=319.38  Aligned_cols=215  Identities=23%  Similarity=0.253  Sum_probs=164.9

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccC----CCceEEecCCccccccccc
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVG----GRDVVQVLNRSSFHDTQLV   88 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~----~~g~i~~~~~~~~~~~~~~   88 (294)
                      +|+++|++++|++   .++|+++||+|++||+++|+||||||||||+++|+|++.|+    .+|.+.++|.+......  
T Consensus         4 ~l~i~~v~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~--   78 (258)
T PRK14241          4 RIDVKDLNIYYGS---FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGV--   78 (258)
T ss_pred             cEEEeeEEEEECC---EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEecccccc--
Confidence            6999999999975   46999999999999999999999999999999999988641    48999988865321000  


Q ss_pred             ccCCcccccccccccccccCc-ccccccccHHHH-hhcC--CCC-c----HHHHHHHHHHcCCC------cccccccCCH
Q 022663           89 CSGDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHM-IFGV--EGS-D----PVRRERLIELLDID------LQWRMHKVSD  153 (294)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~--~~~-~----~~~~~~~l~~l~l~------~~~~~~~LSg  153 (294)
                         .    ...++..++++++ ..++...+..++ .+..  ... .    .+.+.++++.+++.      .++.+.+|||
T Consensus        79 ---~----~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~  151 (258)
T PRK14241         79 ---D----PVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSG  151 (258)
T ss_pred             ---C----hHHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCH
Confidence               0    0011122333332 223333344332 2211  111 1    12345677778762      4677899999


Q ss_pred             HHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEee------CC
Q 022663          154 GQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQ------DG  227 (294)
Q Consensus       154 GqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~------~G  227 (294)
                      ||||||+|||||+.+|++|||||||+|||+.++..+.++|.+++ + +.|||++|||++++.++||++++|+      +|
T Consensus       152 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g  229 (258)
T PRK14241        152 GQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELK-Q-DYTIVIVTHNMQQAARVSDQTAFFNLEATGKPG  229 (258)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCEEEEEecCHHHHHHhCCEEEEEecccCCCCc
Confidence            99999999999999999999999999999999999999999884 3 6899999999999999999999997      79


Q ss_pred             eEEecccHHHHHHh
Q 022663          228 ELRRAEKLAELDEL  241 (294)
Q Consensus       228 ~i~~~g~~~~~~~~  241 (294)
                      ++++.|+++++...
T Consensus       230 ~i~~~~~~~~~~~~  243 (258)
T PRK14241        230 RLVEIDDTEKIFSN  243 (258)
T ss_pred             eEEecCCHHHHHhC
Confidence            99999999888654

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=2.3e-44  Score=314.37  Aligned_cols=192  Identities=22%  Similarity=0.248  Sum_probs=167.7

Q ss_pred             cccEEEcceEEEcCCCC----C--CCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccc
Q 022663           11 LNSIKVCGMQFSYEGND----K--PPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHD   84 (294)
Q Consensus        11 ~~~l~~~~ls~~y~~~~----~--~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~   84 (294)
                      +++++++||++.|....    .  ..+++||||+|++||++||||+||||||||-|+|+|++.|+ +|.|.+.|.+....
T Consensus         2 ~~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt-~G~i~f~g~~i~~~   80 (268)
T COG4608           2 EPLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPT-SGEILFEGKDITKL   80 (268)
T ss_pred             CceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCC-CceEEEcCcchhhc
Confidence            35899999999996421    1  36899999999999999999999999999999999999987 89998887653110


Q ss_pred             ccccccCCcccccccccccccccCcccccccccHHHHhhcCCCCcHHHHHHHHHHcCCC---cccccccCCHHHHHHHHH
Q 022663           85 TQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDID---LQWRMHKVSDGQRRRVQI  161 (294)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~---~~~~~~~LSgGqkqRv~l  161 (294)
                                                      ..        ....+++.++++.+++.   +++++++|||||+||++|
T Consensus        81 --------------------------------~~--------~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~I  120 (268)
T COG4608          81 --------------------------------SK--------EERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGI  120 (268)
T ss_pred             --------------------------------ch--------hHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHH
Confidence                                            00        01124567788888875   579999999999999999


Q ss_pred             HHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHHh
Q 022663          162 CMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDEL  241 (294)
Q Consensus       162 AraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  241 (294)
                      ||||+.+|+++++|||+|+||...+.+++++|.++.++.|.|.++||||+..+..+||||++|..|+|++.|+.++++..
T Consensus       121 ARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~  200 (268)
T COG4608         121 ARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSN  200 (268)
T ss_pred             HHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999886


Q ss_pred             hh
Q 022663          242 RN  243 (294)
Q Consensus       242 ~~  243 (294)
                      +.
T Consensus       201 p~  202 (268)
T COG4608         201 PL  202 (268)
T ss_pred             CC
Confidence            44

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=100.00  E-value=2.7e-44  Score=349.32  Aligned_cols=215  Identities=21%  Similarity=0.315  Sum_probs=170.9

Q ss_pred             cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663           11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS   90 (294)
Q Consensus        11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~   90 (294)
                      .++|+++||+++|++   +.+|+|+||+|++|++++|+||||||||||+|+|+|++.|+ +|.+.++|.+........  
T Consensus         9 ~~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~~~~~--   82 (510)
T PRK15439          9 PPLLCARSISKQYSG---VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD-SGTLEIGGNPCARLTPAK--   82 (510)
T ss_pred             CceEEEEeEEEEeCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCEECCCCCHHH--
Confidence            358999999999975   57999999999999999999999999999999999998876 899988876432110000  


Q ss_pred             CCcccccccccccccccCc-ccccccccHHHHh-hcCCCC--cHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHH
Q 022663           91 GDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-FGVEGS--DPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMG  164 (294)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~--~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAra  164 (294)
                              .....++++++ ..++..++..+++ +.....  ..++..++++.+++.  .++++.+|||||||||+||||
T Consensus        83 --------~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~a  154 (510)
T PRK15439         83 --------AHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRG  154 (510)
T ss_pred             --------HHhCCEEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHH
Confidence                    00012333333 2234445554433 332211  124556788888885  578899999999999999999


Q ss_pred             HccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHH
Q 022663          165 LLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDE  240 (294)
Q Consensus       165 L~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  240 (294)
                      |+.+|++|||||||+|||+.++..+.++|.++++ .|.|||+||||++++..+||+|++|++|+++..|+++++..
T Consensus       155 L~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  229 (510)
T PRK15439        155 LMRDSRILILDEPTASLTPAETERLFSRIRELLA-QGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLST  229 (510)
T ss_pred             HHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCH
Confidence            9999999999999999999999999999999865 48999999999999999999999999999999999887643

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=100.00  E-value=1.8e-44  Score=305.24  Aligned_cols=177  Identities=26%  Similarity=0.438  Sum_probs=145.3

Q ss_pred             EEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcc
Q 022663           15 KVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLS   94 (294)
Q Consensus        15 ~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~   94 (294)
                      +++|++++|++   +++|+++||+|.+||+++|+||||||||||+++|+|++.|+ .|.+.++|.+......        
T Consensus         1 ~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~-~G~v~~~g~~~~~~~~--------   68 (180)
T cd03214           1 EVENLSVGYGG---RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPS-SGEILLDGKDLASLSP--------   68 (180)
T ss_pred             CeeEEEEEECC---eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEECCEECCcCCH--------
Confidence            46899999975   46999999999999999999999999999999999998776 8888887754211000        


Q ss_pred             cccccccccccccCcccccccccHHHHhhcCCCCcHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHHHccCCCEE
Q 022663           95 YLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMGLLHPFKVL  172 (294)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL~~~p~iL  172 (294)
                         ..+...++++                          .++++.+++.  .++.+.+|||||+||++|||||+.+|++|
T Consensus        69 ---~~~~~~i~~~--------------------------~q~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~ll  119 (180)
T cd03214          69 ---KELARKIAYV--------------------------PQALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPIL  119 (180)
T ss_pred             ---HHHHHHHhHH--------------------------HHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence               0000001100                          1156666664  46778999999999999999999999999


Q ss_pred             EeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEec
Q 022663          173 LLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRA  232 (294)
Q Consensus       173 lLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~  232 (294)
                      ||||||++||+.++..+.+.|.++.++.+.|+|++||+++++.++||++++|++|+++..
T Consensus       120 llDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~  179 (180)
T cd03214         120 LLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQ  179 (180)
T ss_pred             EEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEec
Confidence            999999999999999999999988654478999999999999999999999999998754

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6.6e-44  Score=316.93  Aligned_cols=216  Identities=21%  Similarity=0.216  Sum_probs=166.1

Q ss_pred             cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCccc----CCCceEEecCCccccccc
Q 022663           11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMV----GGRDVVQVLNRSSFHDTQ   86 (294)
Q Consensus        11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~----~~~g~i~~~~~~~~~~~~   86 (294)
                      .++|+++|++++|++   +.+|+|+||+|++||+++|+||||||||||+++|+|+..|    ..+|.+.++|.+......
T Consensus         2 ~~~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~   78 (251)
T PRK14270          2 KIKMESKNLNLWYGE---KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDV   78 (251)
T ss_pred             ccEEEEEEeEEEECC---eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccc
Confidence            368999999999975   4699999999999999999999999999999999998764    147899988865421100


Q ss_pred             ccccCCcccccccccccccccCcc-cccccccHH-HHhhcC--CCC-c----HHHHHHHHHHcCCC------cccccccC
Q 022663           87 LVCSGDLSYLGGSWSKTVGSAGEI-PLQGDFSAE-HMIFGV--EGS-D----PVRRERLIELLDID------LQWRMHKV  151 (294)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~--~~~-~----~~~~~~~l~~l~l~------~~~~~~~L  151 (294)
                      .     .    ......++++++. .++. .+.. ++.+..  ... .    ..+..++++.+++.      .++++.+|
T Consensus        79 ~-----~----~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L  148 (251)
T PRK14270         79 D-----V----VELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKL  148 (251)
T ss_pred             c-----H----HHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccC
Confidence            0     0    0011223333331 2233 3433 332221  111 1    12345677888762      46788999


Q ss_pred             CHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEe
Q 022663          152 SDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRR  231 (294)
Q Consensus       152 SgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~  231 (294)
                      |||||||++|||||+.+|++|||||||+|||+.++..+.++|.++.+  +.|||++|||++++..+||++++|++|+++.
T Consensus       149 S~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~--~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~  226 (251)
T PRK14270        149 SGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK--EYTIVIVTHNMQQASRVSDYTAFFLMGDLIE  226 (251)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CCeEEEEEcCHHHHHHhcCEEEEEECCeEEE
Confidence            99999999999999999999999999999999999999999998754  5899999999999999999999999999999


Q ss_pred             cccHHHHHHh
Q 022663          232 AEKLAELDEL  241 (294)
Q Consensus       232 ~g~~~~~~~~  241 (294)
                      .++++++...
T Consensus       227 ~~~~~~~~~~  236 (251)
T PRK14270        227 FNKTEKIFLE  236 (251)
T ss_pred             eCCHHHHhcC
Confidence            9999887654

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=100.00  E-value=6.8e-44  Score=314.13  Aligned_cols=212  Identities=24%  Similarity=0.315  Sum_probs=157.7

Q ss_pred             EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCc
Q 022663           14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL   93 (294)
Q Consensus        14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~   93 (294)
                      |+++|++++|++. .+++|+|+||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|.+.......      
T Consensus         1 i~~~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~-~G~i~~~g~~~~~~~~~------   72 (237)
T cd03252           1 ITFEHVRFRYKPD-GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPE-NGRVLVDGHDLALADPA------   72 (237)
T ss_pred             CEEEEEEEecCCC-CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC-CCEEEECCeehHhcCHH------
Confidence            4789999999642 246999999999999999999999999999999999998876 89999888653211000      


Q ss_pred             ccccccccccccccCcccccccccHHHHh-hcCCCCcHHHHH---------HHHHHc--CCC--cccccccCCHHHHHHH
Q 022663           94 SYLGGSWSKTVGSAGEIPLQGDFSAEHMI-FGVEGSDPVRRE---------RLIELL--DID--LQWRMHKVSDGQRRRV  159 (294)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---------~~l~~l--~l~--~~~~~~~LSgGqkqRv  159 (294)
                           .++..++++++.+.....+..+++ +...........         .+++.+  ++.  .++++.+|||||||||
T Consensus        73 -----~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv  147 (237)
T cd03252          73 -----WLRRQVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRI  147 (237)
T ss_pred             -----HHhhcEEEEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHH
Confidence                 011123333332111123433332 221111111111         223333  222  3567899999999999


Q ss_pred             HHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHH
Q 022663          160 QICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELD  239 (294)
Q Consensus       160 ~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  239 (294)
                      +|||||+.+|++|||||||++||+.++..+.+.|.++. + |.|||++|||++++. .||++++|++|+++..++++++.
T Consensus       148 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~~~~~-~~d~v~~l~~G~i~~~~~~~~~~  224 (237)
T cd03252         148 AIARALIHNPRILIFDEATSALDYESEHAIMRNMHDIC-A-GRTVIIIAHRLSTVK-NADRIIVMEKGRIVEQGSHDELL  224 (237)
T ss_pred             HHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCCHHHHH-hCCEEEEEECCEEEEEcCHHHHH
Confidence            99999999999999999999999999999999999875 3 899999999999996 69999999999999999988876


Q ss_pred             Hh
Q 022663          240 EL  241 (294)
Q Consensus       240 ~~  241 (294)
                      +.
T Consensus       225 ~~  226 (237)
T cd03252         225 AE  226 (237)
T ss_pred             hc
Confidence            54

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=8.8e-44  Score=316.29  Aligned_cols=216  Identities=18%  Similarity=0.222  Sum_probs=165.4

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcc--cC--CCceEEecCCccccccccc
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHM--VG--GRDVVQVLNRSSFHDTQLV   88 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~--~~--~~g~i~~~~~~~~~~~~~~   88 (294)
                      .|+++|++++|++   +.+|+|+||+|++||+++|+||||||||||+++|+|++.  |+  .+|.+.++|.+......  
T Consensus         4 ~l~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~--   78 (252)
T PRK14256          4 KVKLEQLNVHFGK---NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGV--   78 (252)
T ss_pred             EEEEEEEEEEeCC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccC--
Confidence            5999999999975   469999999999999999999999999999999999875  32  37889988865421000  


Q ss_pred             ccCCcccccccccccccccCc-ccccccccHHH-HhhcC--CC-Cc----HHHHHHHHHHcCCC------cccccccCCH
Q 022663           89 CSGDLSYLGGSWSKTVGSAGE-IPLQGDFSAEH-MIFGV--EG-SD----PVRRERLIELLDID------LQWRMHKVSD  153 (294)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~--~~-~~----~~~~~~~l~~l~l~------~~~~~~~LSg  153 (294)
                         ..    ..++..++++++ ..++...+..+ +.+..  .. ..    .+...++++.+++.      .++.+.+|||
T Consensus        79 ---~~----~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~  151 (252)
T PRK14256         79 ---DP----VSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSG  151 (252)
T ss_pred             ---Ch----HHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCH
Confidence               00    001122333333 22333344333 32211  11 11    12345677777763      3567889999


Q ss_pred             HHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecc
Q 022663          154 GQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAE  233 (294)
Q Consensus       154 GqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g  233 (294)
                      ||+||++|||||+.+|++|||||||+|||+.++..+.+.|.++.+  +.|||++|||++++..+||++++|++|+++..+
T Consensus       152 G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~--~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~  229 (252)
T PRK14256        152 GQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE--KYTIIIVTHNMQQAARVSDYTAFFYMGDLVECG  229 (252)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--CCcEEEEECCHHHHHhhCCEEEEEECCEEEEeC
Confidence            999999999999999999999999999999999999999999853  589999999999999999999999999999999


Q ss_pred             cHHHHHHhh
Q 022663          234 KLAELDELR  242 (294)
Q Consensus       234 ~~~~~~~~~  242 (294)
                      +++++....
T Consensus       230 ~~~~~~~~~  238 (252)
T PRK14256        230 ETKKIFTTP  238 (252)
T ss_pred             CHHHHHhCC
Confidence            998876543

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.4e-44  Score=321.17  Aligned_cols=211  Identities=20%  Similarity=0.294  Sum_probs=162.3

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      +|+++||+++|++  ++++|+|+||+|++||+++|+||||||||||+|+|+|++.|+ +|.+.++|.+....   .....
T Consensus         6 ~l~~~~l~~~~~~--~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~i~~~---~~~~~   79 (272)
T PRK15056          6 GIVVNDVTVTWRN--GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLA-SGKISILGQPTRQA---LQKNL   79 (272)
T ss_pred             eEEEEeEEEEecC--CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCEEhHHh---hccce
Confidence            6999999999963  257999999999999999999999999999999999998886 89999888653210   00112


Q ss_pred             cccccccccccccccCcccccccccHHHHhh-c------C---CC-CcHHHHHHHHHHcCCC--cccccccCCHHHHHHH
Q 022663           93 LSYLGGSWSKTVGSAGEIPLQGDFSAEHMIF-G------V---EG-SDPVRRERLIELLDID--LQWRMHKVSDGQRRRV  159 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~---~~-~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv  159 (294)
                      +.+.++....        ......+..+++. +      .   .. .......++++.+++.  .++++.+|||||+||+
T Consensus        80 i~~v~q~~~~--------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv  151 (272)
T PRK15056         80 VAYVPQSEEV--------DWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRV  151 (272)
T ss_pred             EEEecccccc--------ccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHH
Confidence            3333322100        0000011122111 0      0   00 1123445678888885  5788999999999999


Q ss_pred             HHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHH
Q 022663          160 QICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELD  239 (294)
Q Consensus       160 ~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  239 (294)
                      +|||||+.+|++|||||||+|||+.++..+.++|.++++ .|.|||++|||++++..+||+++++ +|+++..|+++++.
T Consensus       152 ~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~-~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~~  229 (272)
T PRK15056        152 FLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRD-EGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETTF  229 (272)
T ss_pred             HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhcc
Confidence            999999999999999999999999999999999999865 4899999999999999999999877 89999999988764

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=100.00  E-value=3.3e-44  Score=347.33  Aligned_cols=220  Identities=23%  Similarity=0.262  Sum_probs=165.1

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      ||+++|++++|++   +.+|+|+||+|++|++++|+||||||||||+|+|+|++.|+ +|.+.+++..............
T Consensus         3 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~-~G~i~~~~~~~~~~~~~~~~~~   78 (490)
T PRK10938          3 SLQISQGTFRLSD---TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLL-SGERQSQFSHITRLSFEQLQKL   78 (490)
T ss_pred             eEEEEeEEEEcCC---eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC-CceEEECCcccccCCHHHHHHH
Confidence            6999999999975   46999999999999999999999999999999999998876 8888877654321000000011


Q ss_pred             cccccccccccccccCcccccccccHHHHhhcCCCCcHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHHHccCCC
Q 022663           93 LSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMGLLHPFK  170 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL~~~p~  170 (294)
                      +.+..+...  ............++..++... .....++..++++.+++.  .++++.+|||||||||+||+||+.+|+
T Consensus        79 i~~~~q~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~  155 (490)
T PRK10938         79 VSDEWQRNN--TDMLSPGEDDTGRTTAEIIQD-EVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPD  155 (490)
T ss_pred             hceeccCcc--hhhcccchhhccccHHHhccc-chhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence            222211100  000000000001223222111 011234567788899885  578899999999999999999999999


Q ss_pred             EEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHH
Q 022663          171 VLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDE  240 (294)
Q Consensus       171 iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  240 (294)
                      +|||||||+|||+.++..+.++|.++++ .|.|||+||||++++.++||+|++|++|+++..|+++++.+
T Consensus       156 lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~  224 (490)
T PRK10938        156 LLILDEPFDGLDVASRQQLAELLASLHQ-SGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQ  224 (490)
T ss_pred             EEEEcCCcccCCHHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhc
Confidence            9999999999999999999999999865 48999999999999999999999999999999998887654

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3e-44  Score=349.21  Aligned_cols=213  Identities=21%  Similarity=0.321  Sum_probs=167.9

Q ss_pred             ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663           12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG   91 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~   91 (294)
                      ++|+++|++++|++   +++|+|+||+|++||+++|+||||||||||+|+|+|++.|+ +|.+.++|.+........   
T Consensus         4 ~~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~-~G~i~~~g~~i~~~~~~~---   76 (510)
T PRK09700          4 PYISMAGIGKSFGP---VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT-KGTITINNINYNKLDHKL---   76 (510)
T ss_pred             ceEEEeeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCC-ccEEEECCEECCCCCHHH---
Confidence            57999999999975   57999999999999999999999999999999999998876 899988886532110000   


Q ss_pred             CcccccccccccccccCc-ccccccccHHHHh-hcCC------CC---c----HHHHHHHHHHcCCC--cccccccCCHH
Q 022663           92 DLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-FGVE------GS---D----PVRRERLIELLDID--LQWRMHKVSDG  154 (294)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~------~~---~----~~~~~~~l~~l~l~--~~~~~~~LSgG  154 (294)
                             ..+..++++++ ..++..++..+++ ++..      ..   .    ..++.++++.+++.  .++++.+||||
T Consensus        77 -------~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG  149 (510)
T PRK09700         77 -------AAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSIS  149 (510)
T ss_pred             -------HHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHH
Confidence                   00112333332 2233344443332 2110      10   1    12456678888885  57889999999


Q ss_pred             HHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEeccc
Q 022663          155 QRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEK  234 (294)
Q Consensus       155 qkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~  234 (294)
                      |||||+|||||+.+|++|||||||+|||+.++..++++|.++++ .|+|||+||||++++..+||++++|++|+++..|+
T Consensus       150 ~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~  228 (510)
T PRK09700        150 HKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRK-EGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGM  228 (510)
T ss_pred             HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecc
Confidence            99999999999999999999999999999999999999999865 48999999999999999999999999999999998


Q ss_pred             HHHHH
Q 022663          235 LAELD  239 (294)
Q Consensus       235 ~~~~~  239 (294)
                      ++++.
T Consensus       229 ~~~~~  233 (510)
T PRK09700        229 VSDVS  233 (510)
T ss_pred             hhhCC
Confidence            87764

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5e-44  Score=354.59  Aligned_cols=221  Identities=19%  Similarity=0.169  Sum_probs=172.7

Q ss_pred             ccEEEcceEEEcCCC--------CCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccc
Q 022663           12 NSIKVCGMQFSYEGN--------DKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFH   83 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~--------~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~   83 (294)
                      ++|+++||++.|+..        ....+|+||||+|++||+++|+||||||||||+|+|+|++.|+ +|.+.++|.+...
T Consensus       312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~-~G~I~~~g~~i~~  390 (623)
T PRK10261        312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQ-GGEIIFNGQRIDT  390 (623)
T ss_pred             ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC-CcEEEECCEECCc
Confidence            589999999999621        0136899999999999999999999999999999999998876 8999998865321


Q ss_pred             cccccccCCcccccccccccccccCcc---cccccccHHHHh-hcC--CCC--c---HHHHHHHHHHcCCC---cccccc
Q 022663           84 DTQLVCSGDLSYLGGSWSKTVGSAGEI---PLQGDFSAEHMI-FGV--EGS--D---PVRRERLIELLDID---LQWRMH  149 (294)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~--~~~--~---~~~~~~~l~~l~l~---~~~~~~  149 (294)
                      .....    .    ..++..++++++.   .+++.++..+.+ +..  ...  .   .+++.++++.+++.   .+++++
T Consensus       391 ~~~~~----~----~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~  462 (623)
T PRK10261        391 LSPGK----L----QALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPH  462 (623)
T ss_pred             CCHHH----H----HHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcc
Confidence            10000    0    0011223333332   133444443332 111  111  1   23456788889984   478999


Q ss_pred             cCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeE
Q 022663          150 KVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL  229 (294)
Q Consensus       150 ~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i  229 (294)
                      +|||||||||+|||||+.+|++|||||||++||+.++.+++++|.+++++.|.|||+||||++++..+||+|++|++|++
T Consensus       463 ~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~i  542 (623)
T PRK10261        463 EFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQI  542 (623)
T ss_pred             cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence            99999999999999999999999999999999999999999999998776789999999999999999999999999999


Q ss_pred             EecccHHHHHHh
Q 022663          230 RRAEKLAELDEL  241 (294)
Q Consensus       230 ~~~g~~~~~~~~  241 (294)
                      ++.|++++++..
T Consensus       543 v~~g~~~~i~~~  554 (623)
T PRK10261        543 VEIGPRRAVFEN  554 (623)
T ss_pred             EEecCHHHHhcC
Confidence            999999998754

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=9e-44  Score=315.63  Aligned_cols=213  Identities=22%  Similarity=0.265  Sum_probs=162.7

Q ss_pred             ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccC----CCceEEecCCcccccccc
Q 022663           12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVG----GRDVVQVLNRSSFHDTQL   87 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~----~~g~i~~~~~~~~~~~~~   87 (294)
                      ++|+++|++++|++   +.+|+++||+|++||+++|+||||||||||+++|+|++.|.    ..|.+.++|.+...... 
T Consensus         2 ~~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~-   77 (249)
T PRK14253          2 NKFNIENLDLFYGE---NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNID-   77 (249)
T ss_pred             CeEEEeccEEEECC---eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccc-
Confidence            47999999999975   57999999999999999999999999999999999988752    37888888764321000 


Q ss_pred             cccCCcccccccccccccccCc-ccccccccH-HHHhhcC--CCC-c----HHHHHHHHHHcCCC------cccccccCC
Q 022663           88 VCSGDLSYLGGSWSKTVGSAGE-IPLQGDFSA-EHMIFGV--EGS-D----PVRRERLIELLDID------LQWRMHKVS  152 (294)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~--~~~-~----~~~~~~~l~~l~l~------~~~~~~~LS  152 (294)
                           .    ..++..++++++ ..++. .+. +++.+..  ... .    .+...++++.+++.      .++++.+||
T Consensus        78 -----~----~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS  147 (249)
T PRK14253         78 -----V----ADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLS  147 (249)
T ss_pred             -----h----HHHHhheeEEecCCCcCc-ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCC
Confidence                 0    011122333333 22233 333 3332221  111 1    12234556666652      356789999


Q ss_pred             HHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEec
Q 022663          153 DGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRA  232 (294)
Q Consensus       153 gGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~  232 (294)
                      |||+|||+|||||+.+|++|||||||+|||+.++..+.++|.++.+  +.|||++||+++++..+||++++|++|+++..
T Consensus       148 ~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~  225 (249)
T PRK14253        148 GGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK--NYTIVIVTHSMQQARRISDRTAFFLMGELVEH  225 (249)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence            9999999999999999999999999999999999999999998853  58999999999999999999999999999999


Q ss_pred             ccHHHHHH
Q 022663          233 EKLAELDE  240 (294)
Q Consensus       233 g~~~~~~~  240 (294)
                      |+++++..
T Consensus       226 g~~~~~~~  233 (249)
T PRK14253        226 DDTQVIFS  233 (249)
T ss_pred             CCHHHHHc
Confidence            99887754

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=100.00  E-value=7.7e-44  Score=313.96  Aligned_cols=212  Identities=22%  Similarity=0.274  Sum_probs=156.3

Q ss_pred             EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCc
Q 022663           14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL   93 (294)
Q Consensus        14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~   93 (294)
                      |+++|++++|++..+.++|+|+||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|.+.......      
T Consensus         1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~-~G~i~~~g~~~~~~~~~------   73 (238)
T cd03249           1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPT-SGEILLDGVDIRDLNLR------   73 (238)
T ss_pred             CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCC-CCEEEECCEehhhcCHH------
Confidence            46899999996422246999999999999999999999999999999999998876 89999888643210000      


Q ss_pred             ccccccccccccccCcc-cccccccHHH-HhhcCCCCcHHHHHHHH---------HHc--CC--CcccccccCCHHHHHH
Q 022663           94 SYLGGSWSKTVGSAGEI-PLQGDFSAEH-MIFGVEGSDPVRRERLI---------ELL--DI--DLQWRMHKVSDGQRRR  158 (294)
Q Consensus        94 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~l---------~~l--~l--~~~~~~~~LSgGqkqR  158 (294)
                           .....++++++. .++. .+..+ +.+.............+         +.+  ++  ..++.+.+|||||+||
T Consensus        74 -----~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qr  147 (238)
T cd03249          74 -----WLRSQIGLVSQEPVLFD-GTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQR  147 (238)
T ss_pred             -----HHHhhEEEECCchhhhh-hhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHH
Confidence                 011122333321 1222 23333 22221111111111222         222  22  2356788999999999


Q ss_pred             HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663          159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL  238 (294)
Q Consensus       159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~  238 (294)
                      |+|||||+.+|++|||||||+|||+.++..+++.|.++.  .|.|||++|||++++. +||++++|++|+++..++.+++
T Consensus       148 v~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~--~g~~vi~~sh~~~~~~-~~d~v~~l~~G~i~~~~~~~~~  224 (238)
T cd03249         148 IAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM--KGRTTIVIAHRLSTIR-NADLIAVLQNGQVVEQGTHDEL  224 (238)
T ss_pred             HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc--CCCEEEEEeCCHHHHh-hCCEEEEEECCEEEEeCCHHHH
Confidence            999999999999999999999999999999999999875  4899999999999997 8999999999999999988776


Q ss_pred             HHh
Q 022663          239 DEL  241 (294)
Q Consensus       239 ~~~  241 (294)
                      .+.
T Consensus       225 ~~~  227 (238)
T cd03249         225 MAQ  227 (238)
T ss_pred             hhc
Confidence            543

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1e-43  Score=315.71  Aligned_cols=217  Identities=21%  Similarity=0.255  Sum_probs=164.9

Q ss_pred             ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCC----CceEEecCCcccccccc
Q 022663           12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGG----RDVVQVLNRSSFHDTQL   87 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~----~g~i~~~~~~~~~~~~~   87 (294)
                      ++|+++||+++|++   +.+|+++||+|.+|++++|+||||||||||+++|+|++.|+.    .|.+.++|.+...... 
T Consensus         3 ~~l~~~~l~~~~~~---~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~-   78 (251)
T PRK14249          3 PKIKIRGVNFFYHK---HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNL-   78 (251)
T ss_pred             ceEEEEEEEEEECC---eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEcccccc-
Confidence            47999999999975   569999999999999999999999999999999999988752    5888888764321000 


Q ss_pred             cccCCcccccccccccccccCcc-cccccccHHHHhhcC--CCC-c----HHHHHHHHHHcCCC------cccccccCCH
Q 022663           88 VCSGDLSYLGGSWSKTVGSAGEI-PLQGDFSAEHMIFGV--EGS-D----PVRRERLIELLDID------LQWRMHKVSD  153 (294)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~-~----~~~~~~~l~~l~l~------~~~~~~~LSg  153 (294)
                          .    ...++..++++++. .+++....+++.+..  ... .    ......+++.+++.      .++++.+|||
T Consensus        79 ----~----~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~  150 (251)
T PRK14249         79 ----D----VVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSG  150 (251)
T ss_pred             ----C----hHHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCH
Confidence                0    00112223333332 223322223333221  111 1    12234456666652      4678899999


Q ss_pred             HHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecc
Q 022663          154 GQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAE  233 (294)
Q Consensus       154 GqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g  233 (294)
                      ||+|||+|||||+.+|++|||||||+|||+.++..+.++|.++.  .+.|||++|||++++..+||++++|++|+++..+
T Consensus       151 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~  228 (251)
T PRK14249        151 GQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK--QNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYG  228 (251)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeC
Confidence            99999999999999999999999999999999999999999873  3799999999999999999999999999999999


Q ss_pred             cHHHHHHhh
Q 022663          234 KLAELDELR  242 (294)
Q Consensus       234 ~~~~~~~~~  242 (294)
                      +++++....
T Consensus       229 ~~~~~~~~~  237 (251)
T PRK14249        229 RTGEIFSRP  237 (251)
T ss_pred             CHHHHHhCC
Confidence            998876543

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=100.00  E-value=5.2e-44  Score=310.28  Aligned_cols=205  Identities=23%  Similarity=0.350  Sum_probs=156.0

Q ss_pred             EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCc
Q 022663           14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL   93 (294)
Q Consensus        14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~   93 (294)
                      +.+ +|+|+|++   +.+  |+||+|++ |+++|+||||||||||+++|+|++.|+ +|.+.++|.+.......   ...
T Consensus         2 ~~~-~l~~~~~~---~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~---~~~   70 (214)
T cd03297           2 LCV-DIEKRLPD---FTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPD-GGTIVLNGTVLFDSRKK---INL   70 (214)
T ss_pred             cee-eeeEecCC---eee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCC-CceEEECCEecccccch---hhh
Confidence            445 99999976   344  99999999 999999999999999999999998876 88888887653210000   000


Q ss_pred             ccccccccccccccCc-ccccccccHHHH-hhcCCC----CcHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHHH
Q 022663           94 SYLGGSWSKTVGSAGE-IPLQGDFSAEHM-IFGVEG----SDPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMGL  165 (294)
Q Consensus        94 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~----~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL  165 (294)
                          ...+..++++++ ..++...+..++ .+....    ....+..++++.+++.  .++++.+||||||||++|||||
T Consensus        71 ----~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al  146 (214)
T cd03297          71 ----PPQQRKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARAL  146 (214)
T ss_pred             ----hhHhhcEEEEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHH
Confidence                001122333333 223334444333 222111    1123456788888885  4788999999999999999999


Q ss_pred             ccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecc
Q 022663          166 LHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAE  233 (294)
Q Consensus       166 ~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g  233 (294)
                      +.+|++|||||||+|||+.+++.+.++|.+++++.|.|||++|||++++..+||++++|++|+++..|
T Consensus       147 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g  214 (214)
T cd03297         147 AAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG  214 (214)
T ss_pred             hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence            99999999999999999999999999999987656899999999999999999999999999997654

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6e-44  Score=317.12  Aligned_cols=215  Identities=23%  Similarity=0.280  Sum_probs=164.2

Q ss_pred             ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcc--c--CCCceEEecCCcccccccc
Q 022663           12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHM--V--GGRDVVQVLNRSSFHDTQL   87 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~--~--~~~g~i~~~~~~~~~~~~~   87 (294)
                      ++|+++|++++|++   +++|+++||+|++||+++|+||||||||||+++|+|++.  |  ...|.+.++|.+...... 
T Consensus         3 ~~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~-   78 (251)
T PRK14251          3 NIISAKDVHLSYGN---YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKM-   78 (251)
T ss_pred             ceEEEEeeEEEECC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccc-
Confidence            37999999999975   579999999999999999999999999999999999876  2  238899888865321000 


Q ss_pred             cccCCcccccccccccccccCc-ccccccccHHH-HhhcC--CC-Cc----HHHHHHHHHHcCCC------cccccccCC
Q 022663           88 VCSGDLSYLGGSWSKTVGSAGE-IPLQGDFSAEH-MIFGV--EG-SD----PVRRERLIELLDID------LQWRMHKVS  152 (294)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~--~~-~~----~~~~~~~l~~l~l~------~~~~~~~LS  152 (294)
                          ..    ..++..++++++ ..++. .+..+ +.+..  .. ..    ......+++.+++.      .++++.+||
T Consensus        79 ----~~----~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS  149 (251)
T PRK14251         79 ----DL----VELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFS  149 (251)
T ss_pred             ----hH----HHhhccEEEEecCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCC
Confidence                00    001112233322 12222 23333 32221  11 11    12345677777772      367889999


Q ss_pred             HHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEec
Q 022663          153 DGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRA  232 (294)
Q Consensus       153 gGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~  232 (294)
                      |||+||++|||||+.+|++|||||||++||+.++..+.+.|.++. + +.|||+||||++++..+||+|++|++|+++..
T Consensus       150 ~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~  227 (251)
T PRK14251        150 GGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELK-H-QYTFIMVTHNLQQAGRISDQTAFLMNGDLIEA  227 (251)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHH-c-CCeEEEEECCHHHHHhhcCEEEEEECCEEEEe
Confidence            999999999999999999999999999999999999999999874 3 68999999999999999999999999999999


Q ss_pred             ccHHHHHHh
Q 022663          233 EKLAELDEL  241 (294)
Q Consensus       233 g~~~~~~~~  241 (294)
                      ++.+++...
T Consensus       228 ~~~~~~~~~  236 (251)
T PRK14251        228 GPTEEMFIA  236 (251)
T ss_pred             CCHHHHHhC
Confidence            998887543

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=8.2e-44  Score=316.08  Aligned_cols=215  Identities=22%  Similarity=0.236  Sum_probs=163.6

Q ss_pred             ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCccc----CCCceEEecCCcccccccc
Q 022663           12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMV----GGRDVVQVLNRSSFHDTQL   87 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~----~~~g~i~~~~~~~~~~~~~   87 (294)
                      ++|+++|++++|++   +++|+++||+|++||+++|+||||||||||+++|+|++.+    ..+|.+.++|.+...... 
T Consensus         2 ~~l~~~~l~~~~~~---~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~-   77 (250)
T PRK14262          2 PIIEIENFSAYYGE---KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQL-   77 (250)
T ss_pred             ceEEEEeeEEEeCC---ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchh-
Confidence            47999999999974   5799999999999999999999999999999999998763    147999888864321000 


Q ss_pred             cccCCcccccccccccccccCcc-cccccccHH-HHhhcC--CC-Cc----HHHHHHHHHHcCCC------cccccccCC
Q 022663           88 VCSGDLSYLGGSWSKTVGSAGEI-PLQGDFSAE-HMIFGV--EG-SD----PVRRERLIELLDID------LQWRMHKVS  152 (294)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~--~~-~~----~~~~~~~l~~l~l~------~~~~~~~LS  152 (294)
                          .    ...+...++++++. .++. .+.. ++.+..  .. ..    .+....+++.+++.      .++++.+||
T Consensus        78 ----~----~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS  148 (250)
T PRK14262         78 ----D----VTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLS  148 (250)
T ss_pred             ----h----HHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcC
Confidence                0    00011123333321 2222 3333 322211  11 11    12235567777763      467889999


Q ss_pred             HHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEec
Q 022663          153 DGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRA  232 (294)
Q Consensus       153 gGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~  232 (294)
                      |||+||++|||||+.+|++|||||||+|||+.++..+.++|.++. + +.|||++|||++++..+||++++|++|+++..
T Consensus       149 ~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~  226 (250)
T PRK14262        149 GGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELS-E-NYTIVIVTHNIGQAIRIADYIAFMYRGELIEY  226 (250)
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHh-c-CcEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence            999999999999999999999999999999999999999999875 3 68999999999999999999999999999999


Q ss_pred             ccHHHHHHh
Q 022663          233 EKLAELDEL  241 (294)
Q Consensus       233 g~~~~~~~~  241 (294)
                      |+++++.+.
T Consensus       227 g~~~~~~~~  235 (250)
T PRK14262        227 GPTREIVER  235 (250)
T ss_pred             cCHHHHHhC
Confidence            998887643

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.5e-43  Score=318.64  Aligned_cols=220  Identities=20%  Similarity=0.189  Sum_probs=165.2

Q ss_pred             CCcccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccC----CCceEEecCCccccc
Q 022663            9 EKLNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVG----GRDVVQVLNRSSFHD   84 (294)
Q Consensus         9 ~~~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~----~~g~i~~~~~~~~~~   84 (294)
                      ...++|+++||+++|++   +++|+++||+|++||+++|+||||||||||+++|+|++.+.    ..|.+.++|.+....
T Consensus        16 ~~~~~l~~~nl~~~~~~---~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~   92 (274)
T PRK14265         16 PDHSVFEVEGVKVFYGG---FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDS   92 (274)
T ss_pred             CCCceEEEeeEEEEeCC---eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccc
Confidence            34568999999999975   46999999999999999999999999999999999987531    378888888654210


Q ss_pred             ccccccCCcccccccccccccccCcc-cccccccHHHHhhcC--CCC---cHHHHHHHHHHcCCC------cccccccCC
Q 022663           85 TQLVCSGDLSYLGGSWSKTVGSAGEI-PLQGDFSAEHMIFGV--EGS---DPVRRERLIELLDID------LQWRMHKVS  152 (294)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~---~~~~~~~~l~~l~l~------~~~~~~~LS  152 (294)
                      ...         ...++..++++++. .++.....+++.+..  ...   .......+++.+++.      .++++.+||
T Consensus        93 ~~~---------~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS  163 (274)
T PRK14265         93 QIN---------SVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALS  163 (274)
T ss_pred             cch---------hHHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCC
Confidence            000         00011223333331 222221123332211  011   112234556666652      467889999


Q ss_pred             HHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEee-------
Q 022663          153 DGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQ-------  225 (294)
Q Consensus       153 gGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~-------  225 (294)
                      |||+|||+|||||+.+|++|||||||+|||+.++..+.++|.++. + +.|||++|||++++.++||++++|+       
T Consensus       164 gGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~  241 (274)
T PRK14265        164 GGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELK-E-QYTIIMVTHNMQQASRVADWTAFFNTEIDEYG  241 (274)
T ss_pred             HHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhCCEEEEEeccccccc
Confidence            999999999999999999999999999999999999999999885 3 6899999999999999999999998       


Q ss_pred             --CCeEEecccHHHHHHhh
Q 022663          226 --DGELRRAEKLAELDELR  242 (294)
Q Consensus       226 --~G~i~~~g~~~~~~~~~  242 (294)
                        +|+++..|+++++....
T Consensus       242 ~~~G~~~~~g~~~~~~~~~  260 (274)
T PRK14265        242 KRRGKLVEFSPTEQMFGSP  260 (274)
T ss_pred             ccCceEEEeCCHHHHHhCC
Confidence              89999999999886543

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=100.00  E-value=8.9e-44  Score=311.25  Aligned_cols=207  Identities=20%  Similarity=0.297  Sum_probs=158.3

Q ss_pred             cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663           11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS   90 (294)
Q Consensus        11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~   90 (294)
                      .++|+++||++.|++   +++|+|+||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|.+.......   
T Consensus         5 ~~~i~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~---   77 (225)
T PRK10247          5 SPLLQLQNVGYLAGD---AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPT-SGTLLFEGEDISTLKPE---   77 (225)
T ss_pred             CceEEEeccEEeeCC---ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC-CCeEEECCEEcCcCCHH---
Confidence            347999999999975   57999999999999999999999999999999999988776 89998887643211000   


Q ss_pred             CCcccccccccccccccCc-ccccccccHHH-Hhhc--CCC--CcHHHHHHHHHHcCCC---cccccccCCHHHHHHHHH
Q 022663           91 GDLSYLGGSWSKTVGSAGE-IPLQGDFSAEH-MIFG--VEG--SDPVRRERLIELLDID---LQWRMHKVSDGQRRRVQI  161 (294)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~--~~~--~~~~~~~~~l~~l~l~---~~~~~~~LSgGqkqRv~l  161 (294)
                              .+...++++++ ..+++. +..+ +.+.  ...  ....+..++++.+++.   .++++.+|||||+|||+|
T Consensus        78 --------~~~~~i~~~~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~l  148 (225)
T PRK10247         78 --------IYRQQVSYCAQTPTLFGD-TVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISL  148 (225)
T ss_pred             --------HHHhccEEEecccccccc-cHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHH
Confidence                    01112222222 122332 3333 3221  111  1233456788888884   478899999999999999


Q ss_pred             HHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEee-CCeEEeccc
Q 022663          162 CMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQ-DGELRRAEK  234 (294)
Q Consensus       162 AraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~-~G~i~~~g~  234 (294)
                      ||||+.+|++|||||||+|||+.++..+.++|.++.++.|.|||++|||++++. .||++++|+ ++..+.+|.
T Consensus       149 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~-~~d~i~~l~~~~~~~~~~~  221 (225)
T PRK10247        149 IRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEIN-HADKVITLQPHAGEMQEAR  221 (225)
T ss_pred             HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHH-hCCEEEEEecccchHhhhh
Confidence            999999999999999999999999999999999987666899999999999996 699999995 444445444

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4e-44  Score=347.95  Aligned_cols=214  Identities=22%  Similarity=0.309  Sum_probs=168.5

Q ss_pred             ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCccc-CCCceEEecCCccccccccccc
Q 022663           12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMV-GGRDVVQVLNRSSFHDTQLVCS   90 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~-~~~g~i~~~~~~~~~~~~~~~~   90 (294)
                      ++|+++||+++|++   +++|+|+||+|++||+++|+||||||||||+|+|+|+++| ..+|.+.++|.+........  
T Consensus         4 ~~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~--   78 (506)
T PRK13549          4 YLLEMKNITKTFGG---VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRD--   78 (506)
T ss_pred             ceEEEeeeEEEeCC---eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHH--
Confidence            57999999999975   5799999999999999999999999999999999999876 24899998886542110000  


Q ss_pred             CCcccccccccccccccCc-ccccccccHHHHh-hcCC----C-Cc----HHHHHHHHHHcCCC--cccccccCCHHHHH
Q 022663           91 GDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-FGVE----G-SD----PVRRERLIELLDID--LQWRMHKVSDGQRR  157 (294)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~----~-~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkq  157 (294)
                              ..+..++++++ ..++..++..+++ +...    . ..    ..++.++++.+++.  .++++.+|||||||
T Consensus        79 --------~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkq  150 (506)
T PRK13549         79 --------TERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQ  150 (506)
T ss_pred             --------HHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHH
Confidence                    00112333332 2233444544432 2211    1 11    13456788888885  57889999999999


Q ss_pred             HHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHH
Q 022663          158 RVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAE  237 (294)
Q Consensus       158 Rv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~  237 (294)
                      ||+|||||+.+|++|||||||++||+.++..++++|.++.+ .|.|||+||||++++..+||+|++|++|+++..+++++
T Consensus       151 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~  229 (506)
T PRK13549        151 LVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKA-HGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAG  229 (506)
T ss_pred             HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeeccccc
Confidence            99999999999999999999999999999999999999864 58999999999999999999999999999999988776


Q ss_pred             HH
Q 022663          238 LD  239 (294)
Q Consensus       238 ~~  239 (294)
                      +.
T Consensus       230 ~~  231 (506)
T PRK13549        230 MT  231 (506)
T ss_pred             CC
Confidence            53

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.5e-43  Score=317.41  Aligned_cols=216  Identities=19%  Similarity=0.193  Sum_probs=165.5

Q ss_pred             cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCccc----CCCceEEecCCccccccc
Q 022663           11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMV----GGRDVVQVLNRSSFHDTQ   86 (294)
Q Consensus        11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~----~~~g~i~~~~~~~~~~~~   86 (294)
                      .++|+++||+++|++   +++|+|+||+|.+||+++|+||||||||||+++|+|++.|    ..+|.+.++|.+......
T Consensus        18 ~~~l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~   94 (267)
T PRK14237         18 EIALSTKDLHVYYGK---KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEI   94 (267)
T ss_pred             CeEEEEeeEEEEECC---eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccC
Confidence            458999999999964   5799999999999999999999999999999999998764    248899888865321000


Q ss_pred             ccccCCcccccccccccccccCc-ccccccccH-HHHhhcCC--CC-c----HHHHHHHHHHcCCC------cccccccC
Q 022663           87 LVCSGDLSYLGGSWSKTVGSAGE-IPLQGDFSA-EHMIFGVE--GS-D----PVRRERLIELLDID------LQWRMHKV  151 (294)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~--~~-~----~~~~~~~l~~l~l~------~~~~~~~L  151 (294)
                           ..    ...+..++++++ ..++.. +. +++.+...  .. .    .....++++.+++.      .++++.+|
T Consensus        95 -----~~----~~~~~~i~~v~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~L  164 (267)
T PRK14237         95 -----NV----YEMRKHIGMVFQRPNPFAK-SIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTL  164 (267)
T ss_pred             -----Ch----HHHhcceEEEecCCccccc-cHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccC
Confidence                 00    001112333333 122222 33 33322211  11 1    12345567777762      46788999


Q ss_pred             CHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEe
Q 022663          152 SDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRR  231 (294)
Q Consensus       152 SgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~  231 (294)
                      ||||+||++|||||+.+|++|||||||+|||+.++..+.++|.++. + +.|||++||+++++..+||++++|++|+++.
T Consensus       165 S~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~  242 (267)
T PRK14237        165 SGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK-K-NYTIIIVTHNMQQAARASDYTAFFYLGDLIE  242 (267)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-c-CCEEEEEecCHHHHHHhcCEEEEEECCEEEE
Confidence            9999999999999999999999999999999999999999999874 3 6899999999999999999999999999999


Q ss_pred             cccHHHHHHh
Q 022663          232 AEKLAELDEL  241 (294)
Q Consensus       232 ~g~~~~~~~~  241 (294)
                      .|+++++...
T Consensus       243 ~g~~~~~~~~  252 (267)
T PRK14237        243 YDKTRNIFTN  252 (267)
T ss_pred             eCCHHHHhcC
Confidence            9999888653

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=100.00  E-value=4.2e-44  Score=333.77  Aligned_cols=212  Identities=22%  Similarity=0.283  Sum_probs=164.2

Q ss_pred             eEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCc----ccccccccccCCcc
Q 022663           19 MQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRS----SFHDTQLVCSGDLS   94 (294)
Q Consensus        19 ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~----~~~~~~~~~~~~~~   94 (294)
                      +.++|+.   ..+|+|+||+|++||+++|+||||||||||+|+|+|++.|+ +|.+.++|..    .......    .. 
T Consensus        30 ~~~~~g~---~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~-~G~I~idG~~~~~~i~~~~~~----~l-  100 (382)
T TIGR03415        30 ILDETGL---VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVS-RGSVLVKDGDGSIDVANCDAA----TL-  100 (382)
T ss_pred             HHHhhCC---EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-CcEEEECCEecccccccCCHH----HH-
Confidence            4445543   46899999999999999999999999999999999998886 8999998752    1110000    00 


Q ss_pred             cccccccccccccCc-ccccccccHHH-HhhcC--CCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHH
Q 022663           95 YLGGSWSKTVGSAGE-IPLQGDFSAEH-MIFGV--EGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMG  164 (294)
Q Consensus        95 ~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAra  164 (294)
                        .......++++++ ..+++..+..+ +.++.  ....    ..+..++++.+++.  .++++.+|||||||||+||||
T Consensus       101 --~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARA  178 (382)
T TIGR03415       101 --RRLRTHRVSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARA  178 (382)
T ss_pred             --HHHhcCCEEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHH
Confidence              0000123444443 33445455443 33332  1111    23456788888885  578899999999999999999


Q ss_pred             HccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHHh
Q 022663          165 LLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDEL  241 (294)
Q Consensus       165 L~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  241 (294)
                      |+.+|+||||||||++||+..+.++.+.|.++.++.++|||+||||++++.++||||++|++|+++..|+++++...
T Consensus       179 La~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~  255 (382)
T TIGR03415       179 FAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLN  255 (382)
T ss_pred             HhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhC
Confidence            99999999999999999999999999999998776689999999999999999999999999999999999988654

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=100.00  E-value=5.3e-44  Score=346.73  Aligned_cols=212  Identities=22%  Similarity=0.339  Sum_probs=167.2

Q ss_pred             ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663           12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG   91 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~   91 (294)
                      ++|+++|++++|++   +++|+|+||+|.+||+++|+||||||||||+|+|+|++.|+ +|.+.++|.+........   
T Consensus         3 ~~i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~-~G~i~~~g~~~~~~~~~~---   75 (501)
T PRK10762          3 ALLQLKGIDKAFPG---VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRD-AGSILYLGKEVTFNGPKS---   75 (501)
T ss_pred             ceEEEeeeEEEeCC---eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEECCEECCCCCHHH---
Confidence            47999999999975   57999999999999999999999999999999999998886 899998886532110000   


Q ss_pred             CcccccccccccccccCc-ccccccccHHHHh-hcCC------CCc----HHHHHHHHHHcCCC--cccccccCCHHHHH
Q 022663           92 DLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-FGVE------GSD----PVRRERLIELLDID--LQWRMHKVSDGQRR  157 (294)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~------~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkq  157 (294)
                             ..+..++++++ ..++..++..+++ ++..      ..+    ..++.++++.+++.  .++++.+|||||||
T Consensus        76 -------~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~q  148 (501)
T PRK10762         76 -------SQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQ  148 (501)
T ss_pred             -------HHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHH
Confidence                   00112233322 2233444544432 2211      111    12456778888885  57889999999999


Q ss_pred             HHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHH
Q 022663          158 RVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAE  237 (294)
Q Consensus       158 Rv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~  237 (294)
                      ||+|||||+.+|++|||||||++||+.++..++++|.++.+ .|.|||+||||++++..+||+|++|++|+++..+++++
T Consensus       149 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~  227 (501)
T PRK10762        149 MVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKS-QGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVAD  227 (501)
T ss_pred             HHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCc
Confidence            99999999999999999999999999999999999999864 58999999999999999999999999999999888766


Q ss_pred             H
Q 022663          238 L  238 (294)
Q Consensus       238 ~  238 (294)
                      +
T Consensus       228 ~  228 (501)
T PRK10762        228 L  228 (501)
T ss_pred             C
Confidence            4

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.5e-43  Score=314.43  Aligned_cols=214  Identities=22%  Similarity=0.268  Sum_probs=162.9

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCccc--C--CCceEEecCCccccccccc
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMV--G--GRDVVQVLNRSSFHDTQLV   88 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~--~--~~g~i~~~~~~~~~~~~~~   88 (294)
                      +|+++||+++|++   +++|+|+||+|++||+++|+||||||||||+++|+|+..+  .  .+|.+.++|.+......  
T Consensus         3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~--   77 (250)
T PRK14240          3 KISVKDLDLFYGD---FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDI--   77 (250)
T ss_pred             eEEEEEEEEEECC---ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc--
Confidence            5999999999975   4699999999999999999999999999999999998653  1  37999988865421000  


Q ss_pred             ccCCcccccccccccccccCc-ccccccccHH-HHhhcC--CCC-c----HHHHHHHHHHcCCC------cccccccCCH
Q 022663           89 CSGDLSYLGGSWSKTVGSAGE-IPLQGDFSAE-HMIFGV--EGS-D----PVRRERLIELLDID------LQWRMHKVSD  153 (294)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~--~~~-~----~~~~~~~l~~l~l~------~~~~~~~LSg  153 (294)
                         ..    ..++..++++++ ..++. .+.. ++.+..  ... .    .+...++++.+++.      .++++.+|||
T Consensus        78 ---~~----~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~  149 (250)
T PRK14240         78 ---DV----NQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSG  149 (250)
T ss_pred             ---ch----HHHhccEEEEecCCccCc-ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCH
Confidence               00    001112333332 12223 3333 332211  111 1    22345566677652      3678899999


Q ss_pred             HHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecc
Q 022663          154 GQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAE  233 (294)
Q Consensus       154 GqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g  233 (294)
                      ||+||++|||||+.+|++|||||||+|||+.++..+.++|.++. + +.|||++|||++++..+||++++|++|+++..+
T Consensus       150 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~  227 (250)
T PRK14240        150 GQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELK-K-DYTIVIVTHNMQQASRISDKTAFFLNGEIVEFG  227 (250)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeC
Confidence            99999999999999999999999999999999999999999874 3 789999999999999999999999999999999


Q ss_pred             cHHHHHHh
Q 022663          234 KLAELDEL  241 (294)
Q Consensus       234 ~~~~~~~~  241 (294)
                      +.+++...
T Consensus       228 ~~~~~~~~  235 (250)
T PRK14240        228 DTVDLFTN  235 (250)
T ss_pred             CHHHHHhC
Confidence            98887653

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=100.00  E-value=1e-43  Score=311.41  Aligned_cols=210  Identities=22%  Similarity=0.297  Sum_probs=156.1

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      .|+++|++++|++  .+.+|+|+||+|++|++++|+||||||||||+++|+|++.|+ +|.+.++|........      
T Consensus         2 ~l~~~~l~~~~~~--~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~~~~------   72 (229)
T cd03254           2 EIEFENVNFSYDE--KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQ-KGQILIDGIDIRDISR------   72 (229)
T ss_pred             eEEEEEEEEecCC--CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC-CCEEEECCEeHHHcCH------
Confidence            4789999999964  246999999999999999999999999999999999998876 8999888764321000      


Q ss_pred             cccccccccccccccCcc-cccccccHH-HHhhcCCCCcHHHHHHHHHHcC-----------CC--cccccccCCHHHHH
Q 022663           93 LSYLGGSWSKTVGSAGEI-PLQGDFSAE-HMIFGVEGSDPVRRERLIELLD-----------ID--LQWRMHKVSDGQRR  157 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~l~-----------l~--~~~~~~~LSgGqkq  157 (294)
                           ..++..++++++. .++.. +.. ++.+............+++.++           +.  .++++.+|||||||
T Consensus        73 -----~~~~~~i~~~~q~~~~~~~-tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~  146 (229)
T cd03254          73 -----KSLRSMIGVVLQDTFLFSG-TIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQ  146 (229)
T ss_pred             -----HHHhhhEEEecCCchhhhh-HHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHH
Confidence                 0011123333332 12222 332 3322211112222223333222           21  34567899999999


Q ss_pred             HHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHH
Q 022663          158 RVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAE  237 (294)
Q Consensus       158 Rv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~  237 (294)
                      ||+|||||+.+|++|||||||+|||+.++..+++.|.++. + +.|||+|||+++++. .||++++|++|+++..++.++
T Consensus       147 rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~~~~-~~d~i~~l~~g~~~~~~~~~~  223 (229)
T cd03254         147 LLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-K-GRTSIIIAHRLSTIK-NADKILVLDDGKIIEEGTHDE  223 (229)
T ss_pred             HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-C-CCEEEEEecCHHHHh-hCCEEEEEeCCeEEEeCCHHH
Confidence            9999999999999999999999999999999999999874 3 899999999999986 599999999999999888777


Q ss_pred             HHH
Q 022663          238 LDE  240 (294)
Q Consensus       238 ~~~  240 (294)
                      +..
T Consensus       224 ~~~  226 (229)
T cd03254         224 LLA  226 (229)
T ss_pred             HHh
Confidence            654

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=100.00  E-value=1e-43  Score=313.15  Aligned_cols=210  Identities=25%  Similarity=0.372  Sum_probs=165.8

Q ss_pred             EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCc
Q 022663           14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL   93 (294)
Q Consensus        14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~   93 (294)
                      |+++|++++|++   +++|+|+||+|.+||+++|+||||||||||+++|+|++.|. .|.+.++|.+.....  .     
T Consensus         1 i~i~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~-~G~i~i~g~~~~~~~--~-----   69 (237)
T TIGR00968         1 IEIANISKRFGS---FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD-SGRIRLNGQDATRVH--A-----   69 (237)
T ss_pred             CEEEEEEEEECC---eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC-ceEEEECCEEcCcCC--h-----
Confidence            478999999975   57999999999999999999999999999999999998776 888988886532110  0     


Q ss_pred             ccccccccccccccCc-ccccccccHHH-HhhcCC--CCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHH
Q 022663           94 SYLGGSWSKTVGSAGE-IPLQGDFSAEH-MIFGVE--GSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQICM  163 (294)
Q Consensus        94 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~--~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAr  163 (294)
                            ....++++++ ..++...+..+ +.+...  ...    .+...++++.+++.  .++.+.+||+||+||++|||
T Consensus        70 ------~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~lar  143 (237)
T TIGR00968        70 ------RDRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALAR  143 (237)
T ss_pred             ------hhcCEEEEecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHH
Confidence                  0112223332 22333334333 222111  111    22346678888875  47788999999999999999


Q ss_pred             HHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHH
Q 022663          164 GLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDE  240 (294)
Q Consensus       164 aL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  240 (294)
                      ||+.+|+++||||||+|||+.++..++++|.++.++.+.|||++||+++++.++||++++|++|++++.++.+++.+
T Consensus       144 al~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~  220 (237)
T TIGR00968       144 ALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYD  220 (237)
T ss_pred             HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHc
Confidence            99999999999999999999999999999998866558999999999999999999999999999999999888754

>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]

Probab=100.00  E-value=1.4e-43  Score=295.62  Aligned_cols=279  Identities=69%  Similarity=1.090  Sum_probs=248.7

Q ss_pred             cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663           11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS   90 (294)
Q Consensus        11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~   90 (294)
                      ...|++.++.|+|...  .|++-|+|++++.|..+.++|.||||||||||+|+|..... .|.+.+.|.+.+++.....+
T Consensus        11 ~~aievsgl~f~y~~~--dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~-~~~v~VlgrsaFhDt~l~~S   87 (291)
T KOG2355|consen   11 DFAIEVSGLQFKYKVS--DPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVG-GGVVQVLGRSAFHDTSLESS   87 (291)
T ss_pred             cceEEEeccEEecccC--CceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCccccc-CCeEEEcCcCcccccccccc
Confidence            3579999999999763  48999999999999999999999999999999999987665 69999999999998888889


Q ss_pred             CCcccccccccccccccCcccccccccHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHHHccCCC
Q 022663           91 GDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFK  170 (294)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv~lAraL~~~p~  170 (294)
                      ++..|.+.+|....+...+.|++.+++++.++++....+.++.+.+++.|++++..+++.+|-|||+||.||..|++.-+
T Consensus        88 gdl~YLGgeW~~~~~~agevplq~D~sae~mifgV~g~dp~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQicMGLL~Pfk  167 (291)
T KOG2355|consen   88 GDLSYLGGEWSKTVGIAGEVPLQGDISAEHMIFGVGGDDPERREKLIDILDIDLRWRMHKVSDGQRRRVQICMGLLKPFK  167 (291)
T ss_pred             CceeEecccccccccccccccccccccHHHHHhhccCCChhHhhhhhhheeccceEEEeeccccchhhhHHHHhccccee
Confidence            99999999999988888889999999999999998888888889999999999999999999999999999999999999


Q ss_pred             EEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHHhhhhhhhHHH
Q 022663          171 VLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDELRNSTNLLSV  250 (294)
Q Consensus       171 iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~~  250 (294)
                      +|||||-|-.||..+|..+++++++.++++|.||+++||-.+-++.+..+++.|..|+++..-+.+.+.+.....++...
T Consensus       168 VLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~~l~~~~i~e~~~~~nl~s~  247 (291)
T KOG2355|consen  168 VLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVDNLKYQKIKEFSTSPNLLST  247 (291)
T ss_pred             EEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeeeccccchhhhhhccchHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999987666666555555566778


Q ss_pred             HHHHHhhhhhhhccCCCCCCcccCCCCCcccCCCcccccccccC
Q 022663          251 VESWLRSETKLEKKRPVDPPKQVQKTSPFGSSPFMSSRHMAYNR  294 (294)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (294)
                      .++|+..+.+..++......  .....++-.+++++||+|+|-|
T Consensus       248 veswlr~E~k~~kk~~k~~~--~s~~~~~~~s~~~s~~~~~~yr  289 (291)
T KOG2355|consen  248 VESWLRKENKNNKKTRKEKK--NSLHPPVLESLKRSSRIMDYYR  289 (291)
T ss_pred             HHHHHHhhhhhhhheeeccc--ccCCChhHhhhhhcccccchhc
Confidence            88999987777665433333  3344568889999999999965

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=100.00  E-value=1e-43  Score=309.55  Aligned_cols=202  Identities=25%  Similarity=0.309  Sum_probs=151.9

Q ss_pred             EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCc
Q 022663           14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL   93 (294)
Q Consensus        14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~   93 (294)
                      |+++|++++|++. .+.+|+|+||+|++|++++|+||||||||||+++|+|+..|+ .|.+.++|.+.......      
T Consensus         3 l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~-~G~i~~~g~~~~~~~~~------   74 (220)
T cd03245           3 IEFRNVSFSYPNQ-EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPT-SGSVLLDGTDIRQLDPA------   74 (220)
T ss_pred             EEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC-CCeEEECCEEhHHCCHH------
Confidence            7899999999642 246999999999999999999999999999999999998776 88998887643110000      


Q ss_pred             ccccccccccccccCcc-cccccccHHHHh-hcCCCCcHHHHHHHHHHcCCC--ccc-----------ccccCCHHHHHH
Q 022663           94 SYLGGSWSKTVGSAGEI-PLQGDFSAEHMI-FGVEGSDPVRRERLIELLDID--LQW-----------RMHKVSDGQRRR  158 (294)
Q Consensus        94 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~l~--~~~-----------~~~~LSgGqkqR  158 (294)
                           ..+..++++++. .++. .+..+.+ +...........++++.+++.  .++           .+.+||||||||
T Consensus        75 -----~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qr  148 (220)
T cd03245          75 -----DLRRNIGYVPQDVTLFY-GTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQA  148 (220)
T ss_pred             -----HHHhhEEEeCCCCcccc-chHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHH
Confidence                 011122333322 1222 2443332 222212233445566666653  233           346999999999


Q ss_pred             HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEec
Q 022663          159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRA  232 (294)
Q Consensus       159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~  232 (294)
                      ++|||||+.+|++|||||||+|||+.++..+++.|.++++  +.|||++|||++++ .+||++++|++|+++..
T Consensus       149 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~~~-~~~d~v~~l~~g~i~~~  219 (220)
T cd03245         149 VALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLG--DKTLIIITHRPSLL-DLVDRIIVMDSGRIVAD  219 (220)
T ss_pred             HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC--CCEEEEEeCCHHHH-HhCCEEEEEeCCeEeec
Confidence            9999999999999999999999999999999999998754  38999999999987 69999999999998764

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.6e-43  Score=319.90  Aligned_cols=216  Identities=19%  Similarity=0.263  Sum_probs=164.4

Q ss_pred             cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCccc----CCCceEEecCCccccccc
Q 022663           11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMV----GGRDVVQVLNRSSFHDTQ   86 (294)
Q Consensus        11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~----~~~g~i~~~~~~~~~~~~   86 (294)
                      .++|+++||+++|++   +.+|+|+||+|++||+++|+||||||||||+++|+|++.+    ..+|.+.++|.+......
T Consensus        37 ~~~l~i~~l~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~  113 (285)
T PRK14254         37 ETVIEARDLNVFYGD---EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADV  113 (285)
T ss_pred             CceEEEEEEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccccc
Confidence            457999999999975   4699999999999999999999999999999999998763    248999988865321000


Q ss_pred             ccccCCcccccccccccccccCcc-cccccccH-HHHhhcC--CCC---cHHHHHHHHHHcCCC------cccccccCCH
Q 022663           87 LVCSGDLSYLGGSWSKTVGSAGEI-PLQGDFSA-EHMIFGV--EGS---DPVRRERLIELLDID------LQWRMHKVSD  153 (294)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~--~~~---~~~~~~~~l~~l~l~------~~~~~~~LSg  153 (294)
                           .    ...++..++++++. .++.. +. +++.+..  ...   ...++..+++.+++.      .++++.+|||
T Consensus       114 -----~----~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSg  183 (285)
T PRK14254        114 -----D----PVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSG  183 (285)
T ss_pred             -----c----hHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCH
Confidence                 0    00011223333321 22222 33 3332211  111   123456677788763      4678899999


Q ss_pred             HHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEE-EeeCCeEEec
Q 022663          154 GQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLA-YIQDGELRRA  232 (294)
Q Consensus       154 GqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~-~l~~G~i~~~  232 (294)
                      ||||||+|||||+.+|++|||||||+|||+.++..+.++|.++++  +.|||++|||++++..+|||++ +|++|+++..
T Consensus       184 Ge~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~--~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~  261 (285)
T PRK14254        184 GQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE--EYTVVIVTHNMQQAARISDKTAVFLTGGELVEF  261 (285)
T ss_pred             HHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEe
Confidence            999999999999999999999999999999999999999999864  4799999999999999999975 6799999999


Q ss_pred             ccHHHHHHh
Q 022663          233 EKLAELDEL  241 (294)
Q Consensus       233 g~~~~~~~~  241 (294)
                      ++++++...
T Consensus       262 g~~~~~~~~  270 (285)
T PRK14254        262 DDTDKIFEN  270 (285)
T ss_pred             CCHHHHHhC
Confidence            998887543

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.1e-43  Score=316.04  Aligned_cols=217  Identities=17%  Similarity=0.194  Sum_probs=163.8

Q ss_pred             ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCccc----CCCceEEecCCcccccccc
Q 022663           12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMV----GGRDVVQVLNRSSFHDTQL   87 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~----~~~g~i~~~~~~~~~~~~~   87 (294)
                      ++|+++||+++|++   .++|+|+||+|++||+++|+||||||||||+++|+|++.+    ..+|.+.++|.+...... 
T Consensus         9 ~~l~i~~v~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~-   84 (264)
T PRK14243          9 TVLRTENLNVYYGS---FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDV-   84 (264)
T ss_pred             eEEEEeeeEEEECC---EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEcccccc-
Confidence            48999999999975   4799999999999999999999999999999999998652    137899888864321000 


Q ss_pred             cccCCcccccccccccccccCc-ccccccccHHHHhhcCC--CC---cHHHHHHHHHHcCCC------cccccccCCHHH
Q 022663           88 VCSGDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMIFGVE--GS---DPVRRERLIELLDID------LQWRMHKVSDGQ  155 (294)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~---~~~~~~~~l~~l~l~------~~~~~~~LSgGq  155 (294)
                          ..    ..+...++++++ ..++.....+++.+...  ..   ..+....+++.+++.      .++.+.+|||||
T Consensus        85 ----~~----~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq  156 (264)
T PRK14243         85 ----DP----VEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQ  156 (264)
T ss_pred             ----Ch----HHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHH
Confidence                00    011122333333 12222222233332211  11   112334556666652      466788999999


Q ss_pred             HHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEee---------C
Q 022663          156 RRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQ---------D  226 (294)
Q Consensus       156 kqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~---------~  226 (294)
                      +||++|||||+.+|++|||||||+|||+.++..+.++|.++.+  +.|||++|||++++..+||+|++|+         +
T Consensus       157 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~  234 (264)
T PRK14243        157 QQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE--QYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRY  234 (264)
T ss_pred             HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEecCHHHHHHhCCEEEEEecccccccccC
Confidence            9999999999999999999999999999999999999998854  5899999999999999999999998         8


Q ss_pred             CeEEecccHHHHHHhh
Q 022663          227 GELRRAEKLAELDELR  242 (294)
Q Consensus       227 G~i~~~g~~~~~~~~~  242 (294)
                      |++++.|+++++.+..
T Consensus       235 g~i~~~~~~~~~~~~~  250 (264)
T PRK14243        235 GYLVEFDRTEKIFNSP  250 (264)
T ss_pred             ceEEEeCCHHHHHhCC
Confidence            9999999999987543

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2e-43  Score=318.05  Aligned_cols=216  Identities=20%  Similarity=0.235  Sum_probs=166.2

Q ss_pred             cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCccc----CCCceEEecCCccccccc
Q 022663           11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMV----GGRDVVQVLNRSSFHDTQ   86 (294)
Q Consensus        11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~----~~~g~i~~~~~~~~~~~~   86 (294)
                      .++|+++||+++|++   +++|+|+||+|++||+++|+||||||||||+++|+|++.|    ..+|.+.++|........
T Consensus        19 ~~~l~i~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~   95 (276)
T PRK14271         19 APAMAAVNLTLGFAG---KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD   95 (276)
T ss_pred             CcEEEEeeEEEEECC---EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccch
Confidence            568999999999975   5799999999999999999999999999999999999875    248889888764321000


Q ss_pred             ccccCCcccccccccccccccCc-ccccccccH-HHHhhcC--CC-CcH----HHHHHHHHHcCCC------cccccccC
Q 022663           87 LVCSGDLSYLGGSWSKTVGSAGE-IPLQGDFSA-EHMIFGV--EG-SDP----VRRERLIELLDID------LQWRMHKV  151 (294)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~--~~-~~~----~~~~~~l~~l~l~------~~~~~~~L  151 (294)
                      .          ..++..++++++ ..++. .+. +++.+..  .. ...    ....++++.+++.      .++.+.+|
T Consensus        96 ~----------~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~L  164 (276)
T PRK14271         96 V----------LEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRL  164 (276)
T ss_pred             h----------HHHhhheEEeccCCccCC-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccC
Confidence            0          011122333333 12233 333 3333221  11 111    1234567777763      35678899


Q ss_pred             CHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEe
Q 022663          152 SDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRR  231 (294)
Q Consensus       152 SgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~  231 (294)
                      ||||+||++|||||+.+|++|||||||++||+.+++.+.+.|.++.+  +.|||+||||++++..+||++++|++|+++.
T Consensus       165 SgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tiiivsH~~~~~~~~~dri~~l~~G~i~~  242 (276)
T PRK14271        165 SGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD--RLTVIIVTHNLAQAARISDRAALFFDGRLVE  242 (276)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence            99999999999999999999999999999999999999999998753  4899999999999999999999999999999


Q ss_pred             cccHHHHHHhh
Q 022663          232 AEKLAELDELR  242 (294)
Q Consensus       232 ~g~~~~~~~~~  242 (294)
                      .++++++.+..
T Consensus       243 ~g~~~~~~~~~  253 (276)
T PRK14271        243 EGPTEQLFSSP  253 (276)
T ss_pred             eCCHHHHHhCc
Confidence            99999886643

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=100.00  E-value=1.5e-43  Score=311.68  Aligned_cols=210  Identities=23%  Similarity=0.307  Sum_probs=165.7

Q ss_pred             EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCc
Q 022663           14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL   93 (294)
Q Consensus        14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~   93 (294)
                      |+++|++++|++    ++|+|+||+|.+||+++|+||||||||||+++|+|++.|+ .|.+.++|.+......  ..   
T Consensus         1 l~~~~l~~~~~~----~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~-~G~v~i~g~~~~~~~~--~~---   70 (235)
T cd03299           1 LKVENLSKDWKE----FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPD-SGKILLNGKDITNLPP--EK---   70 (235)
T ss_pred             CeeEeEEEEeCC----ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC-ceEEEECCEEcCcCCh--hH---
Confidence            468999999964    3899999999999999999999999999999999998886 8999988865321100  01   


Q ss_pred             ccccccccccccccCc-ccccccccHHH-HhhcC--CCC----cHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHH
Q 022663           94 SYLGGSWSKTVGSAGE-IPLQGDFSAEH-MIFGV--EGS----DPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICM  163 (294)
Q Consensus        94 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~--~~~----~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAr  163 (294)
                              ..++++++ ..++...+..+ +.+..  ...    ..+...++++.+++.  .++++.+|||||+||++|||
T Consensus        71 --------~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~lar  142 (235)
T cd03299          71 --------RDISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIAR  142 (235)
T ss_pred             --------cCEEEEeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHH
Confidence                    12222222 22333334333 22221  111    122345678888885  57889999999999999999


Q ss_pred             HHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHHh
Q 022663          164 GLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDEL  241 (294)
Q Consensus       164 aL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  241 (294)
                      ||+.+|++|||||||+|||+.+++.+++.|.+++.+.+.|||++||+++++..+||++++|++|+++..++.+++.+.
T Consensus       143 al~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~  220 (235)
T cd03299         143 ALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKK  220 (235)
T ss_pred             HHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhC
Confidence            999999999999999999999999999999998765689999999999999999999999999999999998877553

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.1e-43  Score=317.31  Aligned_cols=217  Identities=20%  Similarity=0.274  Sum_probs=165.8

Q ss_pred             CcccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCccc----CCCceEEecCCcccccc
Q 022663           10 KLNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMV----GGRDVVQVLNRSSFHDT   85 (294)
Q Consensus        10 ~~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~----~~~g~i~~~~~~~~~~~   85 (294)
                      +.++|+++|++++|++   +++|+|+||+|++||+++|+||||||||||+++|+|++.+    ..+|.+.++|.+.....
T Consensus        22 ~~~~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~   98 (272)
T PRK14236         22 EQTALEVRNLNLFYGD---KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKK   98 (272)
T ss_pred             CCcEEEEEEEEEEECC---eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccc
Confidence            3568999999999965   4699999999999999999999999999999999998764    24899988886542100


Q ss_pred             cccccCCcccccccccccccccCc-ccccccccH-HHHhhc--CCCC-c----HHHHHHHHHHcCCC------ccccccc
Q 022663           86 QLVCSGDLSYLGGSWSKTVGSAGE-IPLQGDFSA-EHMIFG--VEGS-D----PVRRERLIELLDID------LQWRMHK  150 (294)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~--~~~~-~----~~~~~~~l~~l~l~------~~~~~~~  150 (294)
                      .     .    ...++..++++++ ..++.. +. +++.+.  .... .    .....++++.+++.      .++.+.+
T Consensus        99 ~-----~----~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~  168 (272)
T PRK14236         99 V-----D----VAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFG  168 (272)
T ss_pred             c-----C----HHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCccc
Confidence            0     0    0011122333332 122332 33 333222  1111 1    12345667777763      3677899


Q ss_pred             CCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEE
Q 022663          151 VSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELR  230 (294)
Q Consensus       151 LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~  230 (294)
                      |||||+|||+|||||+.+|++|||||||+|||+.++..+.++|.++. + +.|||++||+++++.++||++++|++|+++
T Consensus       169 LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~-~-~~tiiivtH~~~~~~~~~d~i~~l~~G~i~  246 (272)
T PRK14236        169 LSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELK-S-KYTIVIVTHNMQQAARVSDYTAFMYMGKLV  246 (272)
T ss_pred             CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHH-h-CCeEEEEeCCHHHHHhhCCEEEEEECCEEE
Confidence            99999999999999999999999999999999999999999999885 3 689999999999999999999999999999


Q ss_pred             ecccHHHHHHh
Q 022663          231 RAEKLAELDEL  241 (294)
Q Consensus       231 ~~g~~~~~~~~  241 (294)
                      ..|+++++...
T Consensus       247 ~~g~~~~~~~~  257 (272)
T PRK14236        247 EYGDTDTLFTS  257 (272)
T ss_pred             ecCCHHHHhcC
Confidence            99998887543

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.2e-43  Score=313.64  Aligned_cols=217  Identities=23%  Similarity=0.261  Sum_probs=163.1

Q ss_pred             CcccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcc--cC--CCceEEecCCcccccc
Q 022663           10 KLNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHM--VG--GRDVVQVLNRSSFHDT   85 (294)
Q Consensus        10 ~~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~--~~--~~g~i~~~~~~~~~~~   85 (294)
                      +.++|+++||+++|+.   +++|+++||+|.+||+++|+||||||||||+++|+|+..  |+  .+|.+.++|.+.....
T Consensus         2 ~~~~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~   78 (252)
T PRK14255          2 AKKIITSSDVHLFYGK---FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPN   78 (252)
T ss_pred             CcceEEEEeEEEEECC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEccccc
Confidence            3458999999999975   579999999999999999999999999999999999864  32  3789988886532100


Q ss_pred             cccccCCcccccccccccccccCc-ccccccccH-HHHhhcC--CC-Cc----HHHHHHHHHHcCCC------ccccccc
Q 022663           86 QLVCSGDLSYLGGSWSKTVGSAGE-IPLQGDFSA-EHMIFGV--EG-SD----PVRRERLIELLDID------LQWRMHK  150 (294)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~--~~-~~----~~~~~~~l~~l~l~------~~~~~~~  150 (294)
                      .     ..    ..+...++++++ ..++. .+. +++.+..  .. ..    .+....+++.+++.      .++.+.+
T Consensus        79 ~-----~~----~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~  148 (252)
T PRK14255         79 E-----DV----VQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALS  148 (252)
T ss_pred             c-----cH----HHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCccc
Confidence            0     00    001112333332 12222 233 3332211  11 11    12234455666541      3678899


Q ss_pred             CCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEE
Q 022663          151 VSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELR  230 (294)
Q Consensus       151 LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~  230 (294)
                      |||||||||+|||||+.+|++|||||||+|||+.++..+.++|.++.+  +.|||+||||++++..+||+|++|++|+++
T Consensus       149 LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~vsH~~~~~~~~~d~i~~l~~G~i~  226 (252)
T PRK14255        149 LSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD--QYTIILVTHSMHQASRISDKTAFFLTGNLI  226 (252)
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh--CCEEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence            999999999999999999999999999999999999999999998853  589999999999999999999999999999


Q ss_pred             ecccHHHHHHh
Q 022663          231 RAEKLAELDEL  241 (294)
Q Consensus       231 ~~g~~~~~~~~  241 (294)
                      ..+++.++...
T Consensus       227 ~~~~~~~~~~~  237 (252)
T PRK14255        227 EFADTKQMFLN  237 (252)
T ss_pred             EeCCHHHHhcC
Confidence            99998887654

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=100.00  E-value=1.2e-43  Score=346.38  Aligned_cols=223  Identities=21%  Similarity=0.291  Sum_probs=169.5

Q ss_pred             ccEEEcceEEEcCCC-CCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccC----CCceEEecCCccccccc
Q 022663           12 NSIKVCGMQFSYEGN-DKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVG----GRDVVQVLNRSSFHDTQ   86 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~-~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~----~~g~i~~~~~~~~~~~~   86 (294)
                      ++|+++|++++|++. ..+++|+|+||+|.+||+++|+||||||||||+|+|+|+++|.    .+|.+.++|.+......
T Consensus         4 ~~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~   83 (529)
T PRK15134          4 PLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASE   83 (529)
T ss_pred             ceEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCH
Confidence            479999999999631 1246999999999999999999999999999999999998762    48999888865421100


Q ss_pred             ccccCCcccccccccccccccCccc---ccccccHHHHhh-c--C-CCC----cHHHHHHHHHHcCCC-----ccccccc
Q 022663           87 LVCSGDLSYLGGSWSKTVGSAGEIP---LQGDFSAEHMIF-G--V-EGS----DPVRRERLIELLDID-----LQWRMHK  150 (294)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~--~-~~~----~~~~~~~~l~~l~l~-----~~~~~~~  150 (294)
                      ..    ..   ......++++++.+   +.+..+..+... .  . ...    ...++.++++.+++.     .++++.+
T Consensus        84 ~~----~~---~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~  156 (529)
T PRK15134         84 QT----LR---GVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQ  156 (529)
T ss_pred             HH----HH---HHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcc
Confidence            00    00   00001233333221   222233333221 1  0 111    123456788888884     3778999


Q ss_pred             CCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEE
Q 022663          151 VSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELR  230 (294)
Q Consensus       151 LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~  230 (294)
                      |||||||||+|||||+.+|++|||||||++||+.++..++++|.+++++.|.|||+||||++++..+||||++|++|+++
T Consensus       157 LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~  236 (529)
T PRK15134        157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCV  236 (529)
T ss_pred             cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEE
Confidence            99999999999999999999999999999999999999999999987666899999999999999999999999999999


Q ss_pred             ecccHHHHHHh
Q 022663          231 RAEKLAELDEL  241 (294)
Q Consensus       231 ~~g~~~~~~~~  241 (294)
                      ..|+++++...
T Consensus       237 ~~g~~~~~~~~  247 (529)
T PRK15134        237 EQNRAATLFSA  247 (529)
T ss_pred             EeCCHHHHhhC
Confidence            99998887653

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=100.00  E-value=2.3e-43  Score=310.04  Aligned_cols=211  Identities=25%  Similarity=0.352  Sum_probs=157.4

Q ss_pred             EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCc
Q 022663           14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL   93 (294)
Q Consensus        14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~   93 (294)
                      |+++|++++|++. +.++|+++||+|++||+++|+||||||||||+++|+|+++|+ +|.+.++|.........      
T Consensus         1 i~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~~~~------   72 (234)
T cd03251           1 VEFKNVTFRYPGD-GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVD-SGRILIDGHDVRDYTLA------   72 (234)
T ss_pred             CEEEEEEEEeCCC-CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCC-CCEEEECCEEhhhCCHH------
Confidence            4789999999652 136999999999999999999999999999999999998876 89998888643211000      


Q ss_pred             ccccccccccccccCcc-cccccccHHH-HhhcCCCCcHHHH---------HHHHHHc--CCC--cccccccCCHHHHHH
Q 022663           94 SYLGGSWSKTVGSAGEI-PLQGDFSAEH-MIFGVEGSDPVRR---------ERLIELL--DID--LQWRMHKVSDGQRRR  158 (294)
Q Consensus        94 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~---------~~~l~~l--~l~--~~~~~~~LSgGqkqR  158 (294)
                           ..+..++++++. .++. .+..+ +.+..........         .++++.+  ++.  .++++.+||||||||
T Consensus        73 -----~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qr  146 (234)
T cd03251          73 -----SLRRQIGLVSQDVFLFN-DTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQR  146 (234)
T ss_pred             -----HHHhhEEEeCCCCeecc-ccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHH
Confidence                 011122232221 1222 23333 3222211111111         2333333  332  456788999999999


Q ss_pred             HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663          159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL  238 (294)
Q Consensus       159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~  238 (294)
                      ++|||||+.+|++|||||||+|||+.++..+.+.|.++. + +.|||++|||++++.. ||++++|++|+++..++++++
T Consensus       147 v~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~~~~~-~d~v~~l~~G~i~~~~~~~~~  223 (234)
T cd03251         147 IAIARALLKDPPILILDEATSALDTESERLVQAALERLM-K-NRTTFVIAHRLSTIEN-ADRIVVLEDGKIVERGTHEEL  223 (234)
T ss_pred             HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-C-CCEEEEEecCHHHHhh-CCEEEEecCCeEeeeCCHHHH
Confidence            999999999999999999999999999999999999875 3 7899999999999976 999999999999999998887


Q ss_pred             HHh
Q 022663          239 DEL  241 (294)
Q Consensus       239 ~~~  241 (294)
                      .+.
T Consensus       224 ~~~  226 (234)
T cd03251         224 LAQ  226 (234)
T ss_pred             HHc
Confidence            544

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.1e-43  Score=319.48  Aligned_cols=216  Identities=19%  Similarity=0.169  Sum_probs=164.1

Q ss_pred             cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcc--c--CCCceEEecCCccccccc
Q 022663           11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHM--V--GGRDVVQVLNRSSFHDTQ   86 (294)
Q Consensus        11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~--~--~~~g~i~~~~~~~~~~~~   86 (294)
                      .++|+++||+++|++   ..+|+|+||+|.+||+++|+||||||||||+++|+|+..  |  ...|.+.++|.+......
T Consensus        37 ~~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~  113 (286)
T PRK14275         37 KPHVVAKNFSIYYGE---FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFT  113 (286)
T ss_pred             ceEEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhccc
Confidence            457999999999975   469999999999999999999999999999999999753  3  148999888864321000


Q ss_pred             ccccCCcccccccccccccccCc-ccccccccHH-HHhhcC--CCC-c----HHHHHHHHHHcCCC------cccccccC
Q 022663           87 LVCSGDLSYLGGSWSKTVGSAGE-IPLQGDFSAE-HMIFGV--EGS-D----PVRRERLIELLDID------LQWRMHKV  151 (294)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~--~~~-~----~~~~~~~l~~l~l~------~~~~~~~L  151 (294)
                           ..    ..++..++++++ ..++.. +.. ++.+..  ... .    .+...++++.+++.      .++++.+|
T Consensus       114 -----~~----~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~L  183 (286)
T PRK14275        114 -----DE----VLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGL  183 (286)
T ss_pred             -----ch----HHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhC
Confidence                 00    001122333333 222322 333 332221  111 1    12344566777652      46788999


Q ss_pred             CHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEe
Q 022663          152 SDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRR  231 (294)
Q Consensus       152 SgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~  231 (294)
                      ||||+|||+|||||+.+|++|||||||+|||+.++..+.++|.++.+  +.|||++|||++++..+||++++|++|+++.
T Consensus       184 SgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~--~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~  261 (286)
T PRK14275        184 SGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG--SYTIMIVTHNMQQASRVSDYTMFFYEGVLVE  261 (286)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence            99999999999999999999999999999999999999999998753  5899999999999999999999999999999


Q ss_pred             cccHHHHHHh
Q 022663          232 AEKLAELDEL  241 (294)
Q Consensus       232 ~g~~~~~~~~  241 (294)
                      .|+++++.+.
T Consensus       262 ~g~~~~~~~~  271 (286)
T PRK14275        262 HAPTAQLFTN  271 (286)
T ss_pred             eCCHHHHHhC
Confidence            9998887653

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.7e-43  Score=314.40  Aligned_cols=215  Identities=21%  Similarity=0.237  Sum_probs=162.5

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccC----CCceEEecCCccccccccc
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVG----GRDVVQVLNRSSFHDTQLV   88 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~----~~g~i~~~~~~~~~~~~~~   88 (294)
                      +|+++||+++|++   +++|+|+||+|++||+++|+||||||||||+|+|+|++.|.    .+|.+.++|.+......  
T Consensus         4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~--   78 (252)
T PRK14272          4 LLSAQDVNIYYGD---KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRV--   78 (252)
T ss_pred             EEEEeeeEEEECC---EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCcc--
Confidence            6999999999975   57999999999999999999999999999999999988664    26889888864321000  


Q ss_pred             ccCCcccccccccccccccCc-ccccccccHH-HHhhcC--CCC-cH----HHHHHHHHHcCCC------cccccccCCH
Q 022663           89 CSGDLSYLGGSWSKTVGSAGE-IPLQGDFSAE-HMIFGV--EGS-DP----VRRERLIELLDID------LQWRMHKVSD  153 (294)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~--~~~-~~----~~~~~~l~~l~l~------~~~~~~~LSg  153 (294)
                         .    ...++..++++++ ..++...+.. ++.+..  ... ..    +...++++.+++.      .++++.+|||
T Consensus        79 ---~----~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~  151 (252)
T PRK14272         79 ---D----PVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSG  151 (252)
T ss_pred             ---C----HHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCH
Confidence               0    0001112333332 2233333433 332211  111 11    1223444555431      3677899999


Q ss_pred             HHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecc
Q 022663          154 GQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAE  233 (294)
Q Consensus       154 GqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g  233 (294)
                      ||+||++|||||+.+|++|||||||+|||+.++..+.+.|+++. + +.|||++|||++++..+||++++|++|+++..|
T Consensus       152 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~  229 (252)
T PRK14272        152 GQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLK-K-VTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHG  229 (252)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence            99999999999999999999999999999999999999999875 3 689999999999999999999999999999999


Q ss_pred             cHHHHHHh
Q 022663          234 KLAELDEL  241 (294)
Q Consensus       234 ~~~~~~~~  241 (294)
                      +++++...
T Consensus       230 ~~~~~~~~  237 (252)
T PRK14272        230 PTDQLFTN  237 (252)
T ss_pred             CHHHHHhC
Confidence            99887654

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.9e-43  Score=313.19  Aligned_cols=216  Identities=19%  Similarity=0.238  Sum_probs=163.7

Q ss_pred             cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCccc--C--CCceEEecCCccccccc
Q 022663           11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMV--G--GRDVVQVLNRSSFHDTQ   86 (294)
Q Consensus        11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~--~--~~g~i~~~~~~~~~~~~   86 (294)
                      .++|+++|++++|++   +.+|+|+||+|++||+++|+||||||||||+++|+|+..+  +  ..|.+.++|.+......
T Consensus         4 ~~~i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~   80 (253)
T PRK14261          4 EIILSTKNLNLWYGE---KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGA   80 (253)
T ss_pred             cceEEEeeeEEEECC---eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccccc
Confidence            358999999999975   5799999999999999999999999999999999998643  1  27889888865321100


Q ss_pred             ccccCCcccccccccccccccCc-ccccccccHH-HHhhcCC--C-Cc----HHHHHHHHHHcCCC------cccccccC
Q 022663           87 LVCSGDLSYLGGSWSKTVGSAGE-IPLQGDFSAE-HMIFGVE--G-SD----PVRRERLIELLDID------LQWRMHKV  151 (294)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~--~-~~----~~~~~~~l~~l~l~------~~~~~~~L  151 (294)
                           ..    ......++++++ ..++.. +.. ++.+...  . ..    .....++++.+++.      .++.+.+|
T Consensus        81 -----~~----~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~L  150 (253)
T PRK14261         81 -----DV----VALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSL  150 (253)
T ss_pred             -----ch----hhhhceEEEEecCCccCcc-cHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhC
Confidence                 00    001112333332 223332 333 3322211  1 11    12344566666652      46788999


Q ss_pred             CHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEe
Q 022663          152 SDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRR  231 (294)
Q Consensus       152 SgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~  231 (294)
                      |||||||++|||||+.+|++|||||||+|||+.++..+.++|.++.+  +.|||++||+++++..+||++++|++|+++.
T Consensus       151 S~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~--~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~  228 (253)
T PRK14261        151 SGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK--EYTVIIVTHNMQQAARVSDYTGFMYLGKLIE  228 (253)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh--CceEEEEEcCHHHHHhhCCEEEEEECCEEEE
Confidence            99999999999999999999999999999999999999999998753  5899999999999999999999999999999


Q ss_pred             cccHHHHHHh
Q 022663          232 AEKLAELDEL  241 (294)
Q Consensus       232 ~g~~~~~~~~  241 (294)
                      .|+++++...
T Consensus       229 ~g~~~~~~~~  238 (253)
T PRK14261        229 FDKTTQIFEN  238 (253)
T ss_pred             cCCHHHHHhC
Confidence            9999887643

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=100.00  E-value=3.2e-43  Score=312.53  Aligned_cols=213  Identities=19%  Similarity=0.194  Sum_probs=159.9

Q ss_pred             CcccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCC--cccCCCceEEecCCcccccccc
Q 022663           10 KLNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGK--HMVGGRDVVQVLNRSSFHDTQL   87 (294)
Q Consensus        10 ~~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~--~~~~~~g~i~~~~~~~~~~~~~   87 (294)
                      +.++|+++||++.|++   +.+|+++||+|++||+++|+|+||||||||+++|+|+  +.|+ .|.+.++|.+.......
T Consensus         4 ~~~~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~-~G~i~~~g~~~~~~~~~   79 (252)
T CHL00131          4 NKPILEIKNLHASVNE---NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKIL-EGDILFKGESILDLEPE   79 (252)
T ss_pred             CCceEEEEeEEEEeCC---EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCC-CceEEECCEEcccCChh
Confidence            3458999999999975   4699999999999999999999999999999999997  3454 88898887643211000


Q ss_pred             cccCCcccccccccccccccCc-ccccccccHHHHh-hcC---------CCCc----HHHHHHHHHHcCCC---cccccc
Q 022663           88 VCSGDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-FGV---------EGSD----PVRRERLIELLDID---LQWRMH  149 (294)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~---------~~~~----~~~~~~~l~~l~l~---~~~~~~  149 (294)
                      ... .         ..++++++ ..+++..+..+.. +..         ....    ..+..++++.+++.   .++.+.
T Consensus        80 ~~~-~---------~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~  149 (252)
T CHL00131         80 ERA-H---------LGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVN  149 (252)
T ss_pred             hhh-e---------eeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccc
Confidence            000 0         01111111 1222223332221 110         0011    12345677888874   366776


Q ss_pred             -cCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhh-hceEEEeeCC
Q 022663          150 -KVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETW-ATHLAYIQDG  227 (294)
Q Consensus       150 -~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~-~d~v~~l~~G  227 (294)
                       .|||||+|||+|||||+.+|++|||||||+|||+.++..+.++|.++.+ .|.|||++|||++++..+ ||++++|++|
T Consensus       150 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~~tH~~~~~~~~~~d~i~~l~~G  228 (252)
T CHL00131        150 EGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMT-SENSIILITHYQRLLDYIKPDYVHVMQNG  228 (252)
T ss_pred             cCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHhhhCCEEEEEeCC
Confidence             5999999999999999999999999999999999999999999998864 589999999999999887 8999999999


Q ss_pred             eEEecccHHH
Q 022663          228 ELRRAEKLAE  237 (294)
Q Consensus       228 ~i~~~g~~~~  237 (294)
                      +++..|+++.
T Consensus       229 ~i~~~~~~~~  238 (252)
T CHL00131        229 KIIKTGDAEL  238 (252)
T ss_pred             EEEEecChhh
Confidence            9999998873

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.9e-43  Score=316.21  Aligned_cols=217  Identities=18%  Similarity=0.211  Sum_probs=163.0

Q ss_pred             cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcc--c--CCCceEEecCCccccccc
Q 022663           11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHM--V--GGRDVVQVLNRSSFHDTQ   86 (294)
Q Consensus        11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~--~--~~~g~i~~~~~~~~~~~~   86 (294)
                      .++|+++|++++|++   .++|+|+||+|++||+++|+|+||||||||+++|+|++.  |  ...|.+.++|.+......
T Consensus        22 ~~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~   98 (271)
T PRK14238         22 KVVFDTQNLNLWYGE---DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSY   98 (271)
T ss_pred             ceEEEEeeeEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccc
Confidence            458999999999975   469999999999999999999999999999999999876  2  248999988865321000


Q ss_pred             ccccCCcccccccccccccccCcc-cccccccHHHHhhcC--CC-CcH----HHHHHHHHHcCC----C--cccccccCC
Q 022663           87 LVCSGDLSYLGGSWSKTVGSAGEI-PLQGDFSAEHMIFGV--EG-SDP----VRRERLIELLDI----D--LQWRMHKVS  152 (294)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~-~~~----~~~~~~l~~l~l----~--~~~~~~~LS  152 (294)
                           .    ...+...++++++. .++.....+++.+..  .. .+.    ....++++.+++    .  .++++.+||
T Consensus        99 -----~----~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LS  169 (271)
T PRK14238         99 -----S----VEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLS  169 (271)
T ss_pred             -----c----HHHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCC
Confidence                 0    00111223333331 222222223333221  11 111    122344555532    1  467889999


Q ss_pred             HHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEec
Q 022663          153 DGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRA  232 (294)
Q Consensus       153 gGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~  232 (294)
                      ||||||++|||||+.+|++|||||||+|||+.++..+.++|.++.+  +.|||++|||++++..+||++++|++|+++..
T Consensus       170 gGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~  247 (271)
T PRK14238        170 GGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK--DYSIIIVTHNMQQAARISDKTAFFLNGYVNEY  247 (271)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc--CCEEEEEEcCHHHHHHhCCEEEEEECCEEEEe
Confidence            9999999999999999999999999999999999999999998753  68999999999999999999999999999999


Q ss_pred             ccHHHHHHh
Q 022663          233 EKLAELDEL  241 (294)
Q Consensus       233 g~~~~~~~~  241 (294)
                      |+++++...
T Consensus       248 g~~~~~~~~  256 (271)
T PRK14238        248 DDTDKIFSN  256 (271)
T ss_pred             CCHHHHHcC
Confidence            999887654

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=100.00  E-value=7.9e-44  Score=311.39  Aligned_cols=193  Identities=20%  Similarity=0.270  Sum_probs=153.8

Q ss_pred             EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCc
Q 022663           14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL   93 (294)
Q Consensus        14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~   93 (294)
                      +.+++++++|++   +++|+|+||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|......     .   
T Consensus        23 l~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~-~G~i~~~g~~~~~~-----~---   90 (224)
T cd03220          23 LGILGRKGEVGE---FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPD-SGTVTVRGRVSSLL-----G---   90 (224)
T ss_pred             hhhhhhhhhcCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCEEchhh-----c---
Confidence            778899999976   57999999999999999999999999999999999998876 89998877542100     0   


Q ss_pred             ccccccccccccccCcccccccccHHHHh-hcC--CCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHH
Q 022663           94 SYLGGSWSKTVGSAGEIPLQGDFSAEHMI-FGV--EGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMG  164 (294)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAra  164 (294)
                              ...      .+.+..+..+++ +..  ....    .+...++++.+++.  .++.+.+||||||||++||||
T Consensus        91 --------~~~------~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~lara  156 (224)
T cd03220          91 --------LGG------GFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIA  156 (224)
T ss_pred             --------ccc------cCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHH
Confidence                    000      011122332221 110  1111    12345677777875  477889999999999999999


Q ss_pred             HccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecc
Q 022663          165 LLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAE  233 (294)
Q Consensus       165 L~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g  233 (294)
                      |+.+|++|||||||+|||+.++..+.++|.+++++ +.|||++|||++++..+||++++|++|+++..|
T Consensus       157 l~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g  224 (224)
T cd03220         157 TALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQ-GKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG  224 (224)
T ss_pred             HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence            99999999999999999999999999999988754 899999999999999999999999999997654

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.8e-43  Score=314.30  Aligned_cols=216  Identities=20%  Similarity=0.230  Sum_probs=165.3

Q ss_pred             cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccC----CCceEEecCCccccccc
Q 022663           11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVG----GRDVVQVLNRSSFHDTQ   86 (294)
Q Consensus        11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~----~~g~i~~~~~~~~~~~~   86 (294)
                      +++|+++|++++|++   ..+|+|+||+|.+||+++|+|+||||||||+|+|+|++.++    .+|.+.++|.+......
T Consensus         5 ~~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~   81 (259)
T PRK14260          5 IPAIKVKDLSFYYNT---SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRI   81 (259)
T ss_pred             cceEEEEEEEEEECC---eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEecccccc
Confidence            457999999999975   46999999999999999999999999999999999987753    37899988864321000


Q ss_pred             ccccCCcccccccccccccccCc-ccccccccHHH-HhhcC--CC-Cc----HHHHHHHHHHcCCC------cccccccC
Q 022663           87 LVCSGDLSYLGGSWSKTVGSAGE-IPLQGDFSAEH-MIFGV--EG-SD----PVRRERLIELLDID------LQWRMHKV  151 (294)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~--~~-~~----~~~~~~~l~~l~l~------~~~~~~~L  151 (294)
                           .    ...+...++++++ ..++. .+..+ +.+..  .. ..    .+...++++.+++.      .++++.+|
T Consensus        82 -----~----~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~L  151 (259)
T PRK14260         82 -----N----INRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGL  151 (259)
T ss_pred             -----c----hHhhhhheEEEecccccCC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccC
Confidence                 0    0011122333333 22333 34433 32221  11 11    12345667777762      46788999


Q ss_pred             CHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEee-----C
Q 022663          152 SDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQ-----D  226 (294)
Q Consensus       152 SgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~-----~  226 (294)
                      ||||+|||+|||||+.+|++|||||||+|||+.++..+.+.|.++.+  +.|||++|||++++..+||++++|+     +
T Consensus       152 S~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~  229 (259)
T PRK14260        152 SGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS--ELTIAIVTHNMQQATRVSDFTAFFSTDESRI  229 (259)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHHhcCeEEEEeccCCCC
Confidence            99999999999999999999999999999999999999999998753  5899999999999999999999998     5


Q ss_pred             CeEEecccHHHHHHh
Q 022663          227 GELRRAEKLAELDEL  241 (294)
Q Consensus       227 G~i~~~g~~~~~~~~  241 (294)
                      |+++..|+++++.+.
T Consensus       230 G~i~~~~~~~~~~~~  244 (259)
T PRK14260        230 GQMVEFGVTTQIFSN  244 (259)
T ss_pred             ceEEEeCCHHHHhcC
Confidence            999999999988654

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=1.2e-43  Score=288.37  Aligned_cols=211  Identities=22%  Similarity=0.285  Sum_probs=170.8

Q ss_pred             cEEEcceEEEcCCCC-CCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663           13 SIKVCGMQFSYEGND-KPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG   91 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~-~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~   91 (294)
                      .|+++++++..+... ...||++|+|.|++||.++|||||||||||||-+++|+..|+ +|.+.+.|.+........   
T Consensus         6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~s-sGeV~l~G~~L~~ldEd~---   81 (228)
T COG4181           6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS-SGEVRLLGQPLHKLDEDA---   81 (228)
T ss_pred             eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCC-CceEEEcCcchhhcCHHH---
Confidence            799999999986432 356999999999999999999999999999999999999887 999999888654311100   


Q ss_pred             CcccccccccccccccCc-ccccccccHHHHh-hc--CCC--C--cHHHHHHHHHHcCCC--cccccccCCHHHHHHHHH
Q 022663           92 DLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-FG--VEG--S--DPVRRERLIELLDID--LQWRMHKVSDGQRRRVQI  161 (294)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~--~~~--~--~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~l  161 (294)
                       ..   ......++++++ +.+.++++..++. ..  +.+  .  ......++++.+++.  +..+|.+|||||||||+|
T Consensus        82 -rA---~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAi  157 (228)
T COG4181          82 -RA---ALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVAL  157 (228)
T ss_pred             -HH---HhhccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHH
Confidence             00   012334566655 5566777765443 21  112  1  223456788999985  688999999999999999


Q ss_pred             HHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEec
Q 022663          162 CMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRA  232 (294)
Q Consensus       162 AraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~  232 (294)
                      |||++..|+||+.||||-+||..+-.++.++|..+.++.|.|+|+||||..++.+ |+|++.|.+|+++.+
T Consensus       158 ARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~R-c~R~~r~~~G~l~~~  227 (228)
T COG4181         158 ARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAAR-CDRQLRLRSGRLVED  227 (228)
T ss_pred             HHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHh-hhheeeeecceeccC
Confidence            9999999999999999999999999999999999999999999999999998875 999999999998753

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.1e-43  Score=352.02  Aligned_cols=231  Identities=19%  Similarity=0.240  Sum_probs=172.6

Q ss_pred             CcccEEEcceEEEcCCCC-CCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccc-cc
Q 022663           10 KLNSIKVCGMQFSYEGND-KPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDT-QL   87 (294)
Q Consensus        10 ~~~~l~~~~ls~~y~~~~-~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~-~~   87 (294)
                      ..++|+++||++.|+... ..++|+||||+|++||++||+||||||||||+|+|+|++.|+ +|.+.++|....... ..
T Consensus         9 ~~~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~-~G~i~~~g~~~~~~~~~~   87 (623)
T PRK10261          9 ARDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQA-GGLVQCDKMLLRRRSRQV   87 (623)
T ss_pred             CCceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC-CeEEEECCEEeccccccc
Confidence            356899999999996311 246999999999999999999999999999999999998876 888877664220000 00


Q ss_pred             cccCCcc-cccccc-cccccccCcc---cccccccHHH-HhhcC---CCCc----HHHHHHHHHHcCCC-----cccccc
Q 022663           88 VCSGDLS-YLGGSW-SKTVGSAGEI---PLQGDFSAEH-MIFGV---EGSD----PVRRERLIELLDID-----LQWRMH  149 (294)
Q Consensus        88 ~~~~~~~-~~~~~~-~~~~~~~~~~---~~~~~~~~~~-~~~~~---~~~~----~~~~~~~l~~l~l~-----~~~~~~  149 (294)
                      ....... .....+ ...++++++.   .+.+.++..+ +.+..   ....    .+++.++++.+++.     .++++.
T Consensus        88 ~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~  167 (623)
T PRK10261         88 IELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPH  167 (623)
T ss_pred             cccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCc
Confidence            0000000 000000 1234444442   2334445443 32221   1111    23456788889984     478899


Q ss_pred             cCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeE
Q 022663          150 KVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL  229 (294)
Q Consensus       150 ~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i  229 (294)
                      +|||||||||+|||||+.+|++|||||||++||+.++.+++++|++++++.|+|||+||||++++..+||||++|++|++
T Consensus       168 ~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~i  247 (623)
T PRK10261        168 QLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEA  247 (623)
T ss_pred             cCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCee
Confidence            99999999999999999999999999999999999999999999998766689999999999999999999999999999


Q ss_pred             EecccHHHHHHh
Q 022663          230 RRAEKLAELDEL  241 (294)
Q Consensus       230 ~~~g~~~~~~~~  241 (294)
                      +..|+++++...
T Consensus       248 ~~~g~~~~~~~~  259 (623)
T PRK10261        248 VETGSVEQIFHA  259 (623)
T ss_pred             cccCCHHHhhcC
Confidence            999999887653

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=100.00  E-value=1.7e-43  Score=311.61  Aligned_cols=192  Identities=29%  Similarity=0.415  Sum_probs=148.8

Q ss_pred             CCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcccccccccccccccC
Q 022663           29 PPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAG  108 (294)
Q Consensus        29 ~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (294)
                      +++|+|+||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|.+..... .           .....+++++
T Consensus        34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~-~G~i~~~g~~~~~~~-~-----------~~~~~i~~~~  100 (236)
T cd03267          34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPT-SGEVRVAGLVPWKRR-K-----------KFLRRIGVVF  100 (236)
T ss_pred             eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC-ceEEEECCEEccccc-h-----------hhcccEEEEc
Confidence            46999999999999999999999999999999999998886 899988876421100 0           0111222222


Q ss_pred             -c-ccccccccHHHHh-hc--CCCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHHHccCCCEEEeeCC
Q 022663          109 -E-IPLQGDFSAEHMI-FG--VEGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEI  177 (294)
Q Consensus       109 -~-~~~~~~~~~~~~~-~~--~~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEP  177 (294)
                       + ..++..++..+.. +.  .....    ......+++.+++.  .++++.+||||||||++|||||+.+|++||||||
T Consensus       101 ~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP  180 (236)
T cd03267         101 GQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEP  180 (236)
T ss_pred             CCccccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence             1 2233334443322 11  11111    12345677888875  4778899999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecc
Q 022663          178 TVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAE  233 (294)
Q Consensus       178 t~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g  233 (294)
                      |+|||+.++..+.++|.++.++.+.|||++|||++++..+||++++|++|++++.|
T Consensus       181 t~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g  236 (236)
T cd03267         181 TIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG  236 (236)
T ss_pred             CCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence            99999999999999999987656899999999999999999999999999997654

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.3e-43  Score=313.47  Aligned_cols=214  Identities=18%  Similarity=0.235  Sum_probs=161.9

Q ss_pred             EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcc--c--CCCceEEecCCcccccccccc
Q 022663           14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHM--V--GGRDVVQVLNRSSFHDTQLVC   89 (294)
Q Consensus        14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~--~--~~~g~i~~~~~~~~~~~~~~~   89 (294)
                      -+++||+++|++   +++|+|+||+|.+||+++|+||||||||||+++|+|+..  +  ...|.+.++|.+.......  
T Consensus         6 ~~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~--   80 (251)
T PRK14244          6 ASVKNLNLWYGS---KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTN--   80 (251)
T ss_pred             EEeeeEEEEECC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccc--
Confidence            578999999964   579999999999999999999999999999999999875  2  1388998888643210000  


Q ss_pred             cCCcccccccccccccccCcc-cccccccHHHHhhc--CCCC--c----HHHHHHHHHHcCCC------cccccccCCHH
Q 022663           90 SGDLSYLGGSWSKTVGSAGEI-PLQGDFSAEHMIFG--VEGS--D----PVRRERLIELLDID------LQWRMHKVSDG  154 (294)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~--~----~~~~~~~l~~l~l~------~~~~~~~LSgG  154 (294)
                         .    ..++..++++++. .++.....+++.+.  ....  .    ......+++.+++.      .++.+.+||||
T Consensus        81 ---~----~~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G  153 (251)
T PRK14244         81 ---V----VLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGG  153 (251)
T ss_pred             ---h----HHHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHH
Confidence               0    0011123333321 22222222333222  1110  1    12345677888873      35678899999


Q ss_pred             HHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEeccc
Q 022663          155 QRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEK  234 (294)
Q Consensus       155 qkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~  234 (294)
                      ||||++|||||+.+|++|||||||+|||+.++..+.+.|.++. + +.|||++|||++++..+||++++|++|+++..++
T Consensus       154 q~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~  231 (251)
T PRK14244        154 QQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK-K-NFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNT  231 (251)
T ss_pred             HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCC
Confidence            9999999999999999999999999999999999999999874 3 7999999999999999999999999999999999


Q ss_pred             HHHHHHh
Q 022663          235 LAELDEL  241 (294)
Q Consensus       235 ~~~~~~~  241 (294)
                      ++++.+.
T Consensus       232 ~~~~~~~  238 (251)
T PRK14244        232 TQEIFKN  238 (251)
T ss_pred             HHHHhcC
Confidence            8887654

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=8.8e-43  Score=310.78  Aligned_cols=221  Identities=20%  Similarity=0.242  Sum_probs=166.2

Q ss_pred             CcccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccc
Q 022663           10 KLNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVC   89 (294)
Q Consensus        10 ~~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~   89 (294)
                      ..++|.++|++++|++   +.+|+|+||+|.+||+++|+||||||||||+++|+|++.|+ +|.+.+.|...+...... 
T Consensus         7 ~~~~i~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~-~G~v~~~G~~~~~g~~~~-   81 (257)
T PRK14246          7 AEDVFNISRLYLYIND---KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIY-DSKIKVDGKVLYFGKDIF-   81 (257)
T ss_pred             hhhheeeeeEEEecCC---ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-cCceeEcCEEEECCcccc-
Confidence            3578999999999975   57999999999999999999999999999999999998876 665555543211100000 


Q ss_pred             cCCcccccccccccccccCc-ccccccccHHH-HhhcC--CC-CcH----HHHHHHHHHcCCC------cccccccCCHH
Q 022663           90 SGDLSYLGGSWSKTVGSAGE-IPLQGDFSAEH-MIFGV--EG-SDP----VRRERLIELLDID------LQWRMHKVSDG  154 (294)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~--~~-~~~----~~~~~~l~~l~l~------~~~~~~~LSgG  154 (294)
                        ..  ....++..++++++ ..+++..+..+ +.+..  .. ...    .....+++.+++.      .++.+..||+|
T Consensus        82 --~~--~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G  157 (257)
T PRK14246         82 --QI--DAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGG  157 (257)
T ss_pred             --cC--CHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHH
Confidence              00  00011223333333 22334444433 32221  11 111    2345677778873      36788999999


Q ss_pred             HHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEeccc
Q 022663          155 QRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEK  234 (294)
Q Consensus       155 qkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~  234 (294)
                      ||||++|||||+.+|++|||||||+|||+.++..+.+.|.++. + +.|||+|||+++++..+||++++|++|+++..|+
T Consensus       158 ~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~  235 (257)
T PRK14246        158 QQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELK-N-EIAIVIVSHNPQQVARVADYVAFLYNGELVEWGS  235 (257)
T ss_pred             HHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CcEEEEEECCHHHHHHhCCEEEEEECCEEEEECC
Confidence            9999999999999999999999999999999999999999875 3 6899999999999999999999999999999999


Q ss_pred             HHHHHHh
Q 022663          235 LAELDEL  241 (294)
Q Consensus       235 ~~~~~~~  241 (294)
                      .+++.+.
T Consensus       236 ~~~~~~~  242 (257)
T PRK14246        236 SNEIFTS  242 (257)
T ss_pred             HHHHHhC
Confidence            9887654

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=100.00  E-value=2.5e-43  Score=344.06  Aligned_cols=221  Identities=17%  Similarity=0.205  Sum_probs=170.0

Q ss_pred             cccEEEcceEEEcCCC--------CCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccc
Q 022663           11 LNSIKVCGMQFSYEGN--------DKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSF   82 (294)
Q Consensus        11 ~~~l~~~~ls~~y~~~--------~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~   82 (294)
                      .++|+++||+++|+..        +.+.+|+++||+|++||+++|+||||||||||+|+|+|++ ++ +|.+.++|.+..
T Consensus       273 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~-~~-~G~i~~~g~~i~  350 (529)
T PRK15134        273 SPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NS-QGEIWFDGQPLH  350 (529)
T ss_pred             CCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC-CC-CcEEEECCEEcc
Confidence            3579999999999521        0246999999999999999999999999999999999987 44 899998886532


Q ss_pred             ccccccccCCcccccccccccccccCcc---cccccccHHH-HhhcC--C--CCc----HHHHHHHHHHcCCC---cccc
Q 022663           83 HDTQLVCSGDLSYLGGSWSKTVGSAGEI---PLQGDFSAEH-MIFGV--E--GSD----PVRRERLIELLDID---LQWR  147 (294)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~--~--~~~----~~~~~~~l~~l~l~---~~~~  147 (294)
                      .....    ...    .++..++++++.   .+++..+..+ +.++.  .  ...    ..++.++++.+++.   .+++
T Consensus       351 ~~~~~----~~~----~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~  422 (529)
T PRK15134        351 NLNRR----QLL----PVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRY  422 (529)
T ss_pred             ccchh----hHH----HhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcC
Confidence            11000    000    011123333332   1333344433 22221  1  011    23456788889984   4788


Q ss_pred             cccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCC
Q 022663          148 MHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDG  227 (294)
Q Consensus       148 ~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G  227 (294)
                      +.+|||||||||+|||||+.+|++|||||||+|||+.++..++++|.+++++.|.|||+||||++++..+||++++|++|
T Consensus       423 ~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G  502 (529)
T PRK15134        423 PAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQG  502 (529)
T ss_pred             CccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECC
Confidence            99999999999999999999999999999999999999999999999987666899999999999999999999999999


Q ss_pred             eEEecccHHHHHHh
Q 022663          228 ELRRAEKLAELDEL  241 (294)
Q Consensus       228 ~i~~~g~~~~~~~~  241 (294)
                      ++++.|+++++.+.
T Consensus       503 ~i~~~~~~~~~~~~  516 (529)
T PRK15134        503 EVVEQGDCERVFAA  516 (529)
T ss_pred             EEEEEcCHHHHhcC
Confidence            99999999888654

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.7e-43  Score=343.53  Aligned_cols=219  Identities=16%  Similarity=0.182  Sum_probs=165.6

Q ss_pred             ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccc-cccc
Q 022663           12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQ-LVCS   90 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~-~~~~   90 (294)
                      ++|+++||+++|+..++.++|+|+||+|++||+++|+||||||||||+|+|+|++.|..+|.+.++|.+...... ....
T Consensus       258 ~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~  337 (506)
T PRK13549        258 VILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIA  337 (506)
T ss_pred             ceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHH
Confidence            479999999999421124699999999999999999999999999999999999874238999988764321000 0001


Q ss_pred             CCcccccccccccccccCcccccccccHHHHh-hc----CCC---Cc----HHHHHHHHHHcCCC---cccccccCCHHH
Q 022663           91 GDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMI-FG----VEG---SD----PVRRERLIELLDID---LQWRMHKVSDGQ  155 (294)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~---~~----~~~~~~~l~~l~l~---~~~~~~~LSgGq  155 (294)
                      ..+.++++...       ...++..++..+++ +.    ...   .+    .+++.++++.+++.   .++++.+|||||
T Consensus       338 ~~i~~v~q~~~-------~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~  410 (506)
T PRK13549        338 QGIAMVPEDRK-------RDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGN  410 (506)
T ss_pred             CCCEEeCcchh-------hCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHH
Confidence            12222222110       00123334433322 21    100   01    23456788888884   478899999999


Q ss_pred             HHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccH
Q 022663          156 RRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKL  235 (294)
Q Consensus       156 kqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~  235 (294)
                      ||||+|||||+.+|++|||||||+|||+.++..++++|.++++ +|.|||++|||++++.++||++++|++|+++..+++
T Consensus       411 kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~~  489 (506)
T PRK13549        411 QQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQ-QGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLIN  489 (506)
T ss_pred             HHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHH-CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEecc
Confidence            9999999999999999999999999999999999999999875 599999999999999999999999999999998887


Q ss_pred             HHH
Q 022663          236 AEL  238 (294)
Q Consensus       236 ~~~  238 (294)
                      +++
T Consensus       490 ~~~  492 (506)
T PRK13549        490 HNL  492 (506)
T ss_pred             ccC
Confidence            665

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=100.00  E-value=3.1e-43  Score=348.67  Aligned_cols=214  Identities=25%  Similarity=0.310  Sum_probs=172.8

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      .++++||+|+|+.. +.++|+|+||+|++||.+||+|+||||||||+|+|+|++.|. .|.|.++|.+...-.       
T Consensus       471 ~I~~~nvsf~y~~~-~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~-~G~I~~dg~dl~~i~-------  541 (709)
T COG2274         471 EIEFENVSFRYGPD-DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQ-QGRILLDGVDLNDID-------  541 (709)
T ss_pred             eEEEEEEEEEeCCC-CcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CceEEECCEeHHhcC-------
Confidence            59999999999763 347999999999999999999999999999999999999997 999999998753211       


Q ss_pred             cccccccccccccccCcc-cccccccHHHHhhcCCCCcHHHHHHHHHHcCC---------C----cccccccCCHHHHHH
Q 022663           93 LSYLGGSWSKTVGSAGEI-PLQGDFSAEHMIFGVEGSDPVRRERLIELLDI---------D----LQWRMHKVSDGQRRR  158 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l---------~----~~~~~~~LSgGqkqR  158 (294)
                          ...+++.++++.+. .++.....+++.++....+.+.+.++++..+.         .    .......||||||||
T Consensus       542 ----~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQr  617 (709)
T COG2274         542 ----LASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQR  617 (709)
T ss_pred             ----HHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHH
Confidence                12345566666653 34444445565555554444444444444332         1    234456799999999


Q ss_pred             HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663          159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL  238 (294)
Q Consensus       159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~  238 (294)
                      ++|||||+++|+|||||||||+||+.+.+.+.+.|.++.  .|+|+|+|||++..+. .||||++|++|+|+++|+.+++
T Consensus       618 lalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~--~~~T~I~IaHRl~ti~-~adrIiVl~~Gkiv~~gs~~el  694 (709)
T COG2274         618 LALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL--QGRTVIIIAHRLSTIR-SADRIIVLDQGKIVEQGSHEEL  694 (709)
T ss_pred             HHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh--cCCeEEEEEccchHhh-hccEEEEccCCceeccCCHHHH
Confidence            999999999999999999999999999999999999875  3799999999999776 6999999999999999999999


Q ss_pred             HHhh
Q 022663          239 DELR  242 (294)
Q Consensus       239 ~~~~  242 (294)
                      .+..
T Consensus       695 l~~~  698 (709)
T COG2274         695 LAQG  698 (709)
T ss_pred             HHhc
Confidence            8763

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=100.00  E-value=1e-42  Score=306.37  Aligned_cols=209  Identities=23%  Similarity=0.327  Sum_probs=155.1

Q ss_pred             EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCc
Q 022663           14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL   93 (294)
Q Consensus        14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~   93 (294)
                      |+++|++++|++  .+.+|+|+||+|++|++++|+||||||||||+++|+|+.+|+ +|.+.++|.+.......      
T Consensus         1 l~~~~l~~~~~~--~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~-~G~v~~~g~~~~~~~~~------   71 (236)
T cd03253           1 IEFENVTFAYDP--GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVS-SGSILIDGQDIREVTLD------   71 (236)
T ss_pred             CEEEEEEEEeCC--CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC-CCEEEECCEEhhhCCHH------
Confidence            468999999963  246999999999999999999999999999999999998776 89998887643211000      


Q ss_pred             ccccccccccccccCc-ccccccccHH-HHhhcCCCCcHHHHHHHH---------HHc--CCC--cccccccCCHHHHHH
Q 022663           94 SYLGGSWSKTVGSAGE-IPLQGDFSAE-HMIFGVEGSDPVRRERLI---------ELL--DID--LQWRMHKVSDGQRRR  158 (294)
Q Consensus        94 ~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~l---------~~l--~l~--~~~~~~~LSgGqkqR  158 (294)
                           .++..++++++ ..++. .+.. ++.+.............+         +.+  ++.  .++++.+||||||||
T Consensus        72 -----~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~r  145 (236)
T cd03253          72 -----SLRRAIGVVPQDTVLFN-DTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQR  145 (236)
T ss_pred             -----HHHhhEEEECCCChhhc-chHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHH
Confidence                 01112333332 12222 2333 333322111111122222         222  121  345678999999999


Q ss_pred             HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663          159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL  238 (294)
Q Consensus       159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~  238 (294)
                      |+|||||+.+|++|||||||+|||+.++..+.+.|.++. + |.|||++||+++++.. ||++++|++|+++..++.+++
T Consensus       146 l~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sh~~~~~~~-~d~~~~l~~g~i~~~~~~~~~  222 (236)
T cd03253         146 VAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVS-K-GRTTIVIAHRLSTIVN-ADKIIVLKDGRIVERGTHEEL  222 (236)
T ss_pred             HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEcCCHHHHHh-CCEEEEEECCEEEeeCCHHHH
Confidence            999999999999999999999999999999999999875 4 8999999999999975 999999999999999988776


Q ss_pred             HH
Q 022663          239 DE  240 (294)
Q Consensus       239 ~~  240 (294)
                      .+
T Consensus       223 ~~  224 (236)
T cd03253         223 LA  224 (236)
T ss_pred             hh
Confidence            54

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=1.2e-43  Score=307.30  Aligned_cols=225  Identities=32%  Similarity=0.471  Sum_probs=176.3

Q ss_pred             cEEEcceEEEcCCC------------------CCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceE
Q 022663           13 SIKVCGMQFSYEGN------------------DKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVV   74 (294)
Q Consensus        13 ~l~~~~ls~~y~~~------------------~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i   74 (294)
                      ++.++||++.|.-.                  ....+++||||+|++|++++++|||||||||+||+|+|++.|+ +|.+
T Consensus         3 ~i~~~~l~k~~~~~~k~pgl~g~l~~~~~~k~~~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~-~G~v   81 (325)
T COG4586           3 MIMVENLSKNYPVAIKEPGLKGSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPT-SGKV   81 (325)
T ss_pred             eeEecccccccceeeeCchhHHHHHhhcCchhhhhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccC-CCeE
Confidence            67888888887410                  0124788999999999999999999999999999999999987 9999


Q ss_pred             EecCCcccccccccccCCcccccccccccccccCcccccccccHHHHhhcCCCC-cHHHHHHHHHHcCCC--cccccccC
Q 022663           75 QVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGS-DPVRRERLIELLDID--LQWRMHKV  151 (294)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~l~l~--~~~~~~~L  151 (294)
                      .++|.+++.......+ ++.++..   ...+..+..+....+.....++..... -.++.+.+.+.|+++  ++++++.|
T Consensus        82 ~V~G~~Pf~~~~~~~~-~~~~v~g---qk~ql~Wdlp~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~L  157 (325)
T COG4586          82 RVNGKDPFRRREEYLR-SIGLVMG---QKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKL  157 (325)
T ss_pred             EecCcCcchhHHHHHH-HHHHHhh---hhheeeeechhhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhc
Confidence            9999987754322111 1111100   001112233333333333333333221 134566778888887  78999999


Q ss_pred             CHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEe
Q 022663          152 SDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRR  231 (294)
Q Consensus       152 SgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~  231 (294)
                      |-|||.|+.||.+|+++|+||+|||||-|||..++..+.++|++++++++.||+++||+++.+.++||||++|+.|++++
T Consensus       158 SlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~  237 (325)
T COG4586         158 SLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVF  237 (325)
T ss_pred             cchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccHHHHHHhh
Q 022663          232 AEKLAELDELR  242 (294)
Q Consensus       232 ~g~~~~~~~~~  242 (294)
                      +|+.+++.+..
T Consensus       238 dg~l~~l~~~f  248 (325)
T COG4586         238 DGTLAQLQEQF  248 (325)
T ss_pred             cccHHHHHHHh
Confidence            99999887653

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=100.00  E-value=5.1e-43  Score=291.83  Aligned_cols=162  Identities=22%  Similarity=0.348  Sum_probs=134.6

Q ss_pred             EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCc
Q 022663           14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL   93 (294)
Q Consensus        14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~   93 (294)
                      |+++|++++|++   .++|+++||+|++||+++|+||||||||||+++|+|+++|+ +|.+.+++.+.....        
T Consensus         1 l~~~~l~~~~~~---~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~-~G~v~~~g~~~~~~~--------   68 (163)
T cd03216           1 LELRGITKRFGG---VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPD-SGEILVDGKEVSFAS--------   68 (163)
T ss_pred             CEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CeEEEECCEECCcCC--------
Confidence            478999999975   47999999999999999999999999999999999998876 788877664321000        


Q ss_pred             ccccccccccccccCcccccccccHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHHHccCCCEEE
Q 022663           94 SYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLL  173 (294)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv~lAraL~~~p~iLl  173 (294)
                                              ..+           .   .....+     +..+|||||+||++|||||+.+|++||
T Consensus        69 ------------------------~~~-----------~---~~~~i~-----~~~qLS~G~~qrl~laral~~~p~ill  105 (163)
T cd03216          69 ------------------------PRD-----------A---RRAGIA-----MVYQLSVGERQMVEIARALARNARLLI  105 (163)
T ss_pred             ------------------------HHH-----------H---HhcCeE-----EEEecCHHHHHHHHHHHHHhcCCCEEE
Confidence                                    000           0   000000     112399999999999999999999999


Q ss_pred             eeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEe
Q 022663          174 LDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRR  231 (294)
Q Consensus       174 LDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~  231 (294)
                      |||||++||+.+++.+.++|+++.+ .+.|||++|||++++..+||++++|++|++++
T Consensus       106 lDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~  162 (163)
T cd03216         106 LDEPTAALTPAEVERLFKVIRRLRA-QGVAVIFISHRLDEVFEIADRVTVLRDGRVVG  162 (163)
T ss_pred             EECCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence            9999999999999999999998864 48999999999999999999999999999864

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=100.00  E-value=6.8e-43  Score=340.43  Aligned_cols=224  Identities=21%  Similarity=0.248  Sum_probs=168.2

Q ss_pred             cccEEEcceEEEcCC--CCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEec-CCcccccccc
Q 022663           11 LNSIKVCGMQFSYEG--NDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVL-NRSSFHDTQL   87 (294)
Q Consensus        11 ~~~l~~~~ls~~y~~--~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~-~~~~~~~~~~   87 (294)
                      .++|+++||+++|++  .+.+++|+|+||+|++||+++|+||||||||||+|+|+|+++|+ +|.+.++ |.....-...
T Consensus       277 ~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~-~G~i~~~~g~~~~~~~~~  355 (520)
T TIGR03269       277 EPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPT-SGEVNVRVGDEWVDMTKP  355 (520)
T ss_pred             CceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CeEEEEecCCcccccccc
Confidence            358999999999952  11246999999999999999999999999999999999998876 8898885 4321000000


Q ss_pred             cccCCcccccccccccccccCc-ccccccccHHHHh-hc--CCCC---cHHHHHHHHHHcCCC-------cccccccCCH
Q 022663           88 VCSGDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-FG--VEGS---DPVRRERLIELLDID-------LQWRMHKVSD  153 (294)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~--~~~~---~~~~~~~~l~~l~l~-------~~~~~~~LSg  153 (294)
                      . ....    ...+..++++++ ..+++.++..+.+ +.  ....   ...++.++++.+++.       .++++.+|||
T Consensus       356 ~-~~~~----~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSg  430 (520)
T TIGR03269       356 G-PDGR----GRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSE  430 (520)
T ss_pred             c-hhhH----HHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCH
Confidence            0 0000    001112333333 2233444444332 21  1111   122456778888884       3678999999


Q ss_pred             HHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecc
Q 022663          154 GQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAE  233 (294)
Q Consensus       154 GqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g  233 (294)
                      ||||||+|||||+.+|++|||||||+|||+.++..++++|.+++++.|.|||+||||++++.++||++++|++|+++..|
T Consensus       431 Gq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g  510 (520)
T TIGR03269       431 GERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIG  510 (520)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEEC
Confidence            99999999999999999999999999999999999999999987666899999999999999999999999999999999


Q ss_pred             cHHHHHH
Q 022663          234 KLAELDE  240 (294)
Q Consensus       234 ~~~~~~~  240 (294)
                      +++++.+
T Consensus       511 ~~~~~~~  517 (520)
T TIGR03269       511 DPEEIVE  517 (520)
T ss_pred             CHHHHHh
Confidence            8877643

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=100.00  E-value=7.5e-43  Score=306.33  Aligned_cols=201  Identities=22%  Similarity=0.250  Sum_probs=154.1

Q ss_pred             ceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccC---CCceEEecCCcccccccccccCCccccccccccccccc
Q 022663           31 LFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVG---GRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSA  107 (294)
Q Consensus        31 iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~---~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (294)
                      +|+|+||+|++|++++|+||||||||||+|+|+|++.|.   .+|.+.++|.+.... . .....+.+.++...      
T Consensus         1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~-~-~~~~~i~~~~q~~~------   72 (230)
T TIGR02770         1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL-S-IRGRHIATIMQNPR------   72 (230)
T ss_pred             CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh-h-hhhheeEEEecCch------
Confidence            579999999999999999999999999999999998872   388998888654211 0 00012222222110      


Q ss_pred             CcccccccccHHHHh-hcC--CC-C---cHHHHHHHHHHcCCC-----cccccccCCHHHHHHHHHHHHHccCCCEEEee
Q 022663          108 GEIPLQGDFSAEHMI-FGV--EG-S---DPVRRERLIELLDID-----LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLD  175 (294)
Q Consensus       108 ~~~~~~~~~~~~~~~-~~~--~~-~---~~~~~~~~l~~l~l~-----~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLD  175 (294)
                        ..+...++..+.+ +..  .. .   ..+++.++++.+++.     .++.+.+|||||||||+|||||+.+|++||||
T Consensus        73 --~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLD  150 (230)
T TIGR02770        73 --TAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIAD  150 (230)
T ss_pred             --hhcCcccCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEc
Confidence              0022223332221 110  11 1   123456788888885     46788999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHHh
Q 022663          176 EITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDEL  241 (294)
Q Consensus       176 EPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  241 (294)
                      |||+|||+.++..+.+.|.+++++.+.|||++||+++++..+||++++|++|++...++++++...
T Consensus       151 EPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~  216 (230)
T TIGR02770       151 EPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYN  216 (230)
T ss_pred             CCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence            999999999999999999998765689999999999999999999999999999999999887653

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.9e-43  Score=329.08  Aligned_cols=213  Identities=23%  Similarity=0.374  Sum_probs=173.0

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      .++++||+|+|++. ..++|+|+||++++||.++|+|++|||||||+.+|+|.+.|+ +|.+..+|.+...-.       
T Consensus       336 ~l~~~~vsF~y~~~-~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~-~G~i~~~g~~~~~l~-------  406 (573)
T COG4987         336 ALELRNVSFTYPGQ-QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ-QGSITLNGVEIASLD-------  406 (573)
T ss_pred             eeeeccceeecCCC-ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCC-CCeeeECCcChhhCC-------
Confidence            69999999999874 357999999999999999999999999999999999998887 999999987654321       


Q ss_pred             cccccccccccccccCc-ccccccccHHHHhhcCCCCcHHHHHHHHHHcCCC-------------cccccccCCHHHHHH
Q 022663           93 LSYLGGSWSKTVGSAGE-IPLQGDFSAEHMIFGVEGSDPVRRERLIELLDID-------------LQWRMHKVSDGQRRR  158 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------------~~~~~~~LSgGqkqR  158 (294)
                          .+.++..+.+..+ ..++.....+|+.........+...++++.+++.             .+.....|||||+||
T Consensus       407 ----~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rR  482 (573)
T COG4987         407 ----EQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRR  482 (573)
T ss_pred             ----hhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHH
Confidence                1223334444444 3344443344555554455566677777777652             233456799999999


Q ss_pred             HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663          159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL  238 (294)
Q Consensus       159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~  238 (294)
                      ++|||+|+++.+++||||||.|||+.+.+++++.|.+.++  |+|+|+|||++..++ .||||++|++|+++++|.+.++
T Consensus       483 LAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~--~kTll~vTHrL~~le-~~drIivl~~Gkiie~G~~~~L  559 (573)
T COG4987         483 LALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE--GKTLLMVTHRLRGLE-RMDRIIVLDNGKIIEEGTHAEL  559 (573)
T ss_pred             HHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc--CCeEEEEecccccHh-hcCEEEEEECCeeeecCCHHhh
Confidence            9999999999999999999999999999999999988763  899999999999988 5999999999999999999998


Q ss_pred             HHh
Q 022663          239 DEL  241 (294)
Q Consensus       239 ~~~  241 (294)
                      ..+
T Consensus       560 l~~  562 (573)
T COG4987         560 LAN  562 (573)
T ss_pred             hcc
Confidence            764

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=100.00  E-value=8.7e-43  Score=303.87  Aligned_cols=204  Identities=18%  Similarity=0.232  Sum_probs=153.0

Q ss_pred             EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCc
Q 022663           14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL   93 (294)
Q Consensus        14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~   93 (294)
                      |+++|++++|++. .+++|+|+||+|++||+++|+||||||||||+++|+|+..|. +|.+.++|.+......       
T Consensus         3 l~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~~~~-------   73 (221)
T cd03244           3 IEFKNVSLRYRPN-LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELS-SGSILIDGVDISKIGL-------   73 (221)
T ss_pred             EEEEEEEEecCCC-CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCC-CCEEEECCEEhHhCCH-------
Confidence            7899999999642 246999999999999999999999999999999999998776 8999888764321100       


Q ss_pred             ccccccccccccccCcc-cccccccHHHHhhcCCCCcHHHHHHHHHHcCCC-------------cccccccCCHHHHHHH
Q 022663           94 SYLGGSWSKTVGSAGEI-PLQGDFSAEHMIFGVEGSDPVRRERLIELLDID-------------LQWRMHKVSDGQRRRV  159 (294)
Q Consensus        94 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------------~~~~~~~LSgGqkqRv  159 (294)
                          ..++..++++++. .++. .+..+.+.........+..++++.+++.             .++.+.+||+||+||+
T Consensus        74 ----~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~  148 (221)
T cd03244          74 ----HDLRSRISIIPQDPVLFS-GTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLL  148 (221)
T ss_pred             ----HHHhhhEEEECCCCcccc-chHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHH
Confidence                0111223333321 1222 2333332211112223334444444432             2457889999999999


Q ss_pred             HHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEeccc
Q 022663          160 QICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEK  234 (294)
Q Consensus       160 ~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~  234 (294)
                      +|||||+.+|++|||||||+|||+.++..+.++|.++. + +.|||++||+++++.. ||++++|++|+++..++
T Consensus       149 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~~~~~-~d~i~~l~~g~~~~~~~  220 (221)
T cd03244         149 CLARALLRKSKILVLDEATASVDPETDALIQKTIREAF-K-DCTVLTIAHRLDTIID-SDRILVLDKGRVVEFDS  220 (221)
T ss_pred             HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCCHHHHhh-CCEEEEEECCeEEecCC
Confidence            99999999999999999999999999999999999874 3 6899999999999975 99999999999988764

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=100.00  E-value=6.4e-43  Score=295.22  Aligned_cols=177  Identities=26%  Similarity=0.343  Sum_probs=137.6

Q ss_pred             EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCc
Q 022663           14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL   93 (294)
Q Consensus        14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~   93 (294)
                      |+++|++++|++   +++|+++||+|++||+++|+||||||||||+++|+|+++++ .|.+.++|.+......       
T Consensus         1 i~~~~l~~~~~~---~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~~~~-------   69 (178)
T cd03229           1 LELKNVSKRYGQ---KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPD-SGSILIDGEDLTDLED-------   69 (178)
T ss_pred             CEEEEEEEEECC---eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCEEccccch-------
Confidence            478999999965   56999999999999999999999999999999999998776 8999888764321000       


Q ss_pred             ccccccccccccccCcc-cccccccHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHHHccCCCEE
Q 022663           94 SYLGGSWSKTVGSAGEI-PLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVL  172 (294)
Q Consensus        94 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv~lAraL~~~p~iL  172 (294)
                        ....+...+++.++. .++...+..+..                  ..       .|||||+||++|||||+.+|++|
T Consensus        70 --~~~~~~~~i~~~~q~~~~~~~~t~~~~l------------------~~-------~lS~G~~qr~~la~al~~~p~ll  122 (178)
T cd03229          70 --ELPPLRRRIGMVFQDFALFPHLTVLENI------------------AL-------GLSGGQQQRVALARALAMDPDVL  122 (178)
T ss_pred             --hHHHHhhcEEEEecCCccCCCCCHHHhe------------------ee-------cCCHHHHHHHHHHHHHHCCCCEE
Confidence              000011122222221 111122221111                  00       09999999999999999999999


Q ss_pred             EeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCe
Q 022663          173 LLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGE  228 (294)
Q Consensus       173 lLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~  228 (294)
                      ||||||+|||+.++..++++|.+++++.+.|+|++|||++++..+||++++|++|+
T Consensus       123 ilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~  178 (178)
T cd03229         123 LLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK  178 (178)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence            99999999999999999999999876547999999999999999999999999884

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=4e-43  Score=302.66  Aligned_cols=195  Identities=19%  Similarity=0.243  Sum_probs=153.1

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      ||+++|++++|++   +++|+|+||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|.+......      
T Consensus         1 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~-~G~v~~~g~~~~~~~~------   70 (204)
T PRK13538          1 MLEARNLACERDE---RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPD-AGEVLWQGEPIRRQRD------   70 (204)
T ss_pred             CeEEEEEEEEECC---EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEECCEEcccchH------
Confidence            4899999999975   46999999999999999999999999999999999998886 8999888764321100      


Q ss_pred             cccccccccccccccCc-ccccccccHHHHh-hcC--CC-CcHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHHH
Q 022663           93 LSYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-FGV--EG-SDPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMGL  165 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~--~~-~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL  165 (294)
                            .+...++++.+ ..+++..+..+.+ +..  .. .....+.++++.+++.  .++++.+||||||||++|||||
T Consensus        71 ------~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al  144 (204)
T PRK13538         71 ------EYHQDLLYLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLW  144 (204)
T ss_pred             ------HhhhheEEeCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHH
Confidence                  01112222222 2233334443332 211  11 2334567788889885  5788999999999999999999


Q ss_pred             ccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEe
Q 022663          166 LHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYI  224 (294)
Q Consensus       166 ~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l  224 (294)
                      +.+|++|||||||++||+.++..+.++|.++++ .+.|||++|||++++..+.+|++++
T Consensus       145 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~~i~~~~~~~~~~  202 (204)
T PRK13538        145 LTRAPLWILDEPFTAIDKQGVARLEALLAQHAE-QGGMVILTTHQDLPVASDKVRKLRL  202 (204)
T ss_pred             hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-CCCEEEEEecChhhhccCCceEEec
Confidence            999999999999999999999999999998864 4899999999999999988888776

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=100.00  E-value=6.6e-43  Score=293.82  Aligned_cols=172  Identities=27%  Similarity=0.454  Sum_probs=137.9

Q ss_pred             EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCc
Q 022663           14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL   93 (294)
Q Consensus        14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~   93 (294)
                      |+++|++++|++   .++|+++||++.+||+++|+||||||||||+++|+|++.|. .|.+.++|.+.....        
T Consensus         1 l~~~~l~~~~~~---~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~-~G~i~~~g~~~~~~~--------   68 (173)
T cd03230           1 IEVRNLSKRYGK---KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPD-SGEIKVLGKDIKKEP--------   68 (173)
T ss_pred             CEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CeEEEECCEEcccch--------
Confidence            468999999975   46999999999999999999999999999999999998776 899988876432100        


Q ss_pred             ccccccccccccccCc-ccccccccHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHHHccCCCEE
Q 022663           94 SYLGGSWSKTVGSAGE-IPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVL  172 (294)
Q Consensus        94 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv~lAraL~~~p~iL  172 (294)
                          ..++..++++++ ..++...+..+.+                           .|||||+||++|||||+.+|++|
T Consensus        69 ----~~~~~~i~~~~q~~~~~~~~tv~~~~---------------------------~LS~G~~qrv~laral~~~p~il  117 (173)
T cd03230          69 ----EEVKRRIGYLPEEPSLYENLTVRENL---------------------------KLSGGMKQRLALAQALLHDPELL  117 (173)
T ss_pred             ----HhhhccEEEEecCCccccCCcHHHHh---------------------------hcCHHHHHHHHHHHHHHcCCCEE
Confidence                011122333322 1122222221111                           09999999999999999999999


Q ss_pred             EeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeE
Q 022663          173 LLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL  229 (294)
Q Consensus       173 lLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i  229 (294)
                      ||||||++||+.++..+.++|.++.++ |.|+|++|||.+++..+||++++|++|++
T Consensus       118 llDEPt~~LD~~~~~~l~~~l~~~~~~-g~tiii~th~~~~~~~~~d~i~~l~~g~i  173 (173)
T cd03230         118 ILDEPTSGLDPESRREFWELLRELKKE-GKTILLSSHILEEAERLCDRVAILNNGRI  173 (173)
T ss_pred             EEeCCccCCCHHHHHHHHHHHHHHHHC-CCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence            999999999999999999999998765 89999999999999999999999999874

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=1.1e-42  Score=302.11  Aligned_cols=197  Identities=22%  Similarity=0.304  Sum_probs=154.4

Q ss_pred             cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663           11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS   90 (294)
Q Consensus        11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~   90 (294)
                      .++|+++|++++|++   +++|+++||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|......   ...
T Consensus         9 ~~~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~-~G~i~~~g~~i~~~---~~~   81 (214)
T PRK13543          9 PPLLAAHALAFSRNE---EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVE-SGQIQIDGKTATRG---DRS   81 (214)
T ss_pred             cceEEEeeEEEecCC---ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCC-CeeEEECCEEccch---hhh
Confidence            458999999999975   46999999999999999999999999999999999998876 89998888643210   000


Q ss_pred             CCcccccccccccccccCc-ccccccccHHHHh-hc--CCCC-cHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHH
Q 022663           91 GDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-FG--VEGS-DPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICM  163 (294)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~--~~~~-~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAr  163 (294)
                                 ..++++++ ..++...+..+.+ +.  .... ..+....+++.+++.  .++++.+||||||||++|||
T Consensus        82 -----------~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lar  150 (214)
T PRK13543         82 -----------RFMAYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALAR  150 (214)
T ss_pred             -----------hceEEeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHH
Confidence                       11222222 1223333433322 21  1111 223446778888875  57889999999999999999


Q ss_pred             HHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeC
Q 022663          164 GLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQD  226 (294)
Q Consensus       164 aL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~  226 (294)
                      |++.+|++|||||||++||+.+++.+.++|.++.+ .|.|||++|||++++.++||++++++.
T Consensus       151 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~~~~~~~~~i~~l~~  212 (214)
T PRK13543        151 LWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLR-GGGAALVTTHGAYAAPPVRTRMLTLEA  212 (214)
T ss_pred             HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecChhhhhhhcceEEEEee
Confidence            99999999999999999999999999999998865 489999999999999999999999864

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=7.2e-43  Score=338.78  Aligned_cols=208  Identities=21%  Similarity=0.311  Sum_probs=163.1

Q ss_pred             ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663           12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG   91 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~   91 (294)
                      ++|+++||+++|++   +++|+|+||+|++||+++|+||||||||||+|+|+|++.|+ +|.+.++|.+.......    
T Consensus         3 ~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~-~G~I~~~g~~i~~~~~~----   74 (501)
T PRK11288          3 PYLSFDGIGKTFPG---VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD-AGSILIDGQEMRFASTT----   74 (501)
T ss_pred             ceEEEeeeEEEECC---EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CCEEEECCEECCCCCHH----
Confidence            58999999999975   46999999999999999999999999999999999998876 89998887653211000    


Q ss_pred             CcccccccccccccccCc-ccccccccHHH-HhhcCC----C-Cc----HHHHHHHHHHcCCC--cccccccCCHHHHHH
Q 022663           92 DLSYLGGSWSKTVGSAGE-IPLQGDFSAEH-MIFGVE----G-SD----PVRRERLIELLDID--LQWRMHKVSDGQRRR  158 (294)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~----~-~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqR  158 (294)
                            ..++..++++++ ..++..++..+ +.+...    . ..    .++..++++.+++.  .++++.+||||||||
T Consensus        75 ------~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qr  148 (501)
T PRK11288         75 ------AALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQM  148 (501)
T ss_pred             ------HHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHH
Confidence                  001112333332 22333444433 322210    1 11    23456788888885  478899999999999


Q ss_pred             HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEeccc
Q 022663          159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEK  234 (294)
Q Consensus       159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~  234 (294)
                      |+|||||+.+|++|||||||+|||+.++..+.++|.++.+ .|.|||+||||++++..+||+|++|++|+++..++
T Consensus       149 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~  223 (501)
T PRK11288        149 VEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRA-EGRVILYVSHRMEEIFALCDAITVFKDGRYVATFD  223 (501)
T ss_pred             HHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecC
Confidence            9999999999999999999999999999999999999864 58999999999999999999999999999987554

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=100.00  E-value=3.5e-43  Score=308.48  Aligned_cols=191  Identities=24%  Similarity=0.266  Sum_probs=149.7

Q ss_pred             eeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcccccccccccccccCccc
Q 022663           32 FYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIP  111 (294)
Q Consensus        32 L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (294)
                      |+++||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|.+.....     ....+.++          ...
T Consensus         1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~~-----~~~~~v~q----------~~~   64 (230)
T TIGR01184         1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPT-SGGVILEGKQITEPG-----PDRMVVFQ----------NYS   64 (230)
T ss_pred             CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEECCEECCCCC-----hhheEEec----------Ccc
Confidence            57999999999999999999999999999999998876 899988876432100     00111111          122


Q ss_pred             ccccccHHHHh-hcC----CCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCC
Q 022663          112 LQGDFSAEHMI-FGV----EGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVD  180 (294)
Q Consensus       112 ~~~~~~~~~~~-~~~----~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~g  180 (294)
                      ++...+..+++ +..    ....    .....++++.+++.  .++++.+|||||||||+|||||+.+|++|||||||+|
T Consensus        65 l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~g  144 (230)
T TIGR01184        65 LLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGA  144 (230)
T ss_pred             cCCCCCHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcC
Confidence            33334443322 211    1111    12346778888885  5788999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663          181 LDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL  238 (294)
Q Consensus       181 LD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~  238 (294)
                      ||+.++..+.+.|.+++++.|.|||+||||++++..+||+|++|++|+++..|+..++
T Consensus       145 LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~  202 (230)
T TIGR01184       145 LDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEV  202 (230)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceec
Confidence            9999999999999998766689999999999999999999999999999988865544

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.3e-42  Score=317.78  Aligned_cols=219  Identities=20%  Similarity=0.260  Sum_probs=167.4

Q ss_pred             ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCccc----CCCceEEecCCcccccccc
Q 022663           12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMV----GGRDVVQVLNRSSFHDTQL   87 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~----~~~g~i~~~~~~~~~~~~~   87 (294)
                      .+|+++|++++|.+. .+++|+|+||+|++||++||+||||||||||+++|+|+..+    ...|.+.++|.+...... 
T Consensus        79 ~~i~~~nls~~y~~~-~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~-  156 (329)
T PRK14257         79 NVFEIRNFNFWYMNR-TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKI-  156 (329)
T ss_pred             ceEEEEeeEEEecCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc-
Confidence            489999999999631 25699999999999999999999999999999999998753    237899998876431100 


Q ss_pred             cccCCcccccccccccccccCccc-ccccccH-HHHhhcC--CCC-cHH----HHHHHHHHcCCC------cccccccCC
Q 022663           88 VCSGDLSYLGGSWSKTVGSAGEIP-LQGDFSA-EHMIFGV--EGS-DPV----RRERLIELLDID------LQWRMHKVS  152 (294)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~--~~~-~~~----~~~~~l~~l~l~------~~~~~~~LS  152 (294)
                            .  ...++..++++++.+ ++. .+. +++.++.  ... +.+    ....+++.+++.      .++++..||
T Consensus       157 ------~--~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LS  227 (329)
T PRK14257        157 ------S--SLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALS  227 (329)
T ss_pred             ------c--hHhhhccEEEEecCCccCC-CcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCC
Confidence                  0  001122233333322 222 343 3443321  111 111    134566766652      467889999


Q ss_pred             HHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEec
Q 022663          153 DGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRA  232 (294)
Q Consensus       153 gGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~  232 (294)
                      |||||||+|||||+.+|+||||||||++||+.+...+.+.|.++.+  ++|||+|||+++++..+||||++|++|++++.
T Consensus       228 gGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~--~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~  305 (329)
T PRK14257        228 GGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK--KYSIIIVTHSMAQAQRISDETVFFYQGWIEEA  305 (329)
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence            9999999999999999999999999999999999999999988753  68999999999999999999999999999999


Q ss_pred             ccHHHHHHhhh
Q 022663          233 EKLAELDELRN  243 (294)
Q Consensus       233 g~~~~~~~~~~  243 (294)
                      |++++++..+.
T Consensus       306 g~~~~l~~~~~  316 (329)
T PRK14257        306 GETKTIFIHPK  316 (329)
T ss_pred             CCHHHHhcCCC
Confidence            99999876544

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=100.00  E-value=2.2e-42  Score=306.43  Aligned_cols=211  Identities=20%  Similarity=0.229  Sum_probs=156.1

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCc--ccCCCceEEecCCcccccccc-cc
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKH--MVGGRDVVQVLNRSSFHDTQL-VC   89 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~--~~~~~g~i~~~~~~~~~~~~~-~~   89 (294)
                      ||+++||+++|++   +++|+|+||+|++|++++|+||||||||||+++|+|++  .|+ +|.+.++|.+....... ..
T Consensus         1 ~i~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~-~G~i~~~g~~~~~~~~~~~~   76 (248)
T PRK09580          1 MLSIKDLHVSVED---KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVT-GGTVEFKGKDLLELSPEDRA   76 (248)
T ss_pred             CeEEEEEEEEeCC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCC-ceEEEECCCccccCCHHHHh
Confidence            4899999999975   46999999999999999999999999999999999985  454 89999988654211000 00


Q ss_pred             cCCcccccccccccccccCcccccccccHHHH-------hhcCCC---Cc----HHHHHHHHHHcCCC---cccccc-cC
Q 022663           90 SGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHM-------IFGVEG---SD----PVRRERLIELLDID---LQWRMH-KV  151 (294)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~---~~----~~~~~~~l~~l~l~---~~~~~~-~L  151 (294)
                      ...+.+..+.          ..+++..+...+       ......   .+    .....++++.+++.   .++.+. +|
T Consensus        77 ~~~i~~~~q~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~L  146 (248)
T PRK09580         77 GEGIFMAFQY----------PVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGF  146 (248)
T ss_pred             hcceEEEecC----------chhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCC
Confidence            0112222111          111111111100       000000   01    12345667777773   345554 79


Q ss_pred             CHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhh-hceEEEeeCCeEE
Q 022663          152 SDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETW-ATHLAYIQDGELR  230 (294)
Q Consensus       152 SgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~-~d~v~~l~~G~i~  230 (294)
                      ||||||||+|||||+.+|++|||||||++||+.++..+.+.|.++++ .++|||++|||++++..+ ||+|++|++|+++
T Consensus       147 S~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~  225 (248)
T PRK09580        147 SGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRD-GKRSFIIVTHYQRILDYIKPDYVHVLYQGRIV  225 (248)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHhhhCCEEEEEECCeEE
Confidence            99999999999999999999999999999999999999999998754 589999999999999987 8999999999999


Q ss_pred             ecccHHHH
Q 022663          231 RAEKLAEL  238 (294)
Q Consensus       231 ~~g~~~~~  238 (294)
                      ..|+++..
T Consensus       226 ~~g~~~~~  233 (248)
T PRK09580        226 KSGDFTLV  233 (248)
T ss_pred             EeCCHHHH
Confidence            99987744

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=100.00  E-value=8.9e-43  Score=313.01  Aligned_cols=211  Identities=18%  Similarity=0.262  Sum_probs=163.2

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      .|+++||+++|++. ..++|+|+||+|++||+++|+||||||||||+++|+|++. . .|.+.++|.+......      
T Consensus         2 ~i~~~nls~~~~~~-~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~-~G~I~i~g~~i~~~~~------   72 (275)
T cd03289           2 QMTVKDLTAKYTEG-GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T-EGDIQIDGVSWNSVPL------   72 (275)
T ss_pred             eEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-C-CcEEEECCEEhhhCCH------
Confidence            38899999999531 2569999999999999999999999999999999999876 4 7999998865421100      


Q ss_pred             cccccccccccccccCc-ccccccccHHHHhhcCCCCcHHHHHHHHHHcCCC--ccccccc-----------CCHHHHHH
Q 022663           93 LSYLGGSWSKTVGSAGE-IPLQGDFSAEHMIFGVEGSDPVRRERLIELLDID--LQWRMHK-----------VSDGQRRR  158 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~--~~~~~~~-----------LSgGqkqR  158 (294)
                           ..++..++++++ ..++.. +..+++........+...++++.+++.  .++.+..           |||||+||
T Consensus        73 -----~~lr~~i~~v~q~~~lf~~-tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qr  146 (275)
T cd03289          73 -----QKWRKAFGVIPQKVFIFSG-TFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQL  146 (275)
T ss_pred             -----HHHhhhEEEECCCcccchh-hHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHH
Confidence                 011223344433 223332 443333211122344556677777774  3445544           99999999


Q ss_pred             HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663          159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL  238 (294)
Q Consensus       159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~  238 (294)
                      ++|||||+.+|+||||||||++||+.++..+.+.|.+..  .++|||+|||+++++.. ||||++|++|++++.|+++++
T Consensus       147 l~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~--~~~tii~isH~~~~i~~-~dri~vl~~G~i~~~g~~~~l  223 (275)
T cd03289         147 MCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF--ADCTVILSEHRIEAMLE-CQRFLVIEENKVRQYDSIQKL  223 (275)
T ss_pred             HHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc--CCCEEEEEECCHHHHHh-CCEEEEecCCeEeecCCHHHH
Confidence            999999999999999999999999999999999998753  47999999999998875 999999999999999999998


Q ss_pred             HHh
Q 022663          239 DEL  241 (294)
Q Consensus       239 ~~~  241 (294)
                      ...
T Consensus       224 ~~~  226 (275)
T cd03289         224 LNE  226 (275)
T ss_pred             hhC
Confidence            774

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.6e-42  Score=309.76  Aligned_cols=218  Identities=20%  Similarity=0.171  Sum_probs=167.3

Q ss_pred             CCcccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCccc----CCCceEEecCCccccc
Q 022663            9 EKLNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMV----GGRDVVQVLNRSSFHD   84 (294)
Q Consensus         9 ~~~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~----~~~g~i~~~~~~~~~~   84 (294)
                      +..+.+.+++++++|++   .++|+|+||+|++||+++|+|+||||||||+++|+|++.|    ..+|.+.++|.+....
T Consensus         4 ~~~~~~~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~   80 (261)
T PRK14263          4 EAPIVMDCKLDKIFYGN---FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGK   80 (261)
T ss_pred             CCCceEEEEeEEEEeCC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEecccc
Confidence            45678999999999975   5799999999999999999999999999999999999876    1489999988654210


Q ss_pred             ccccccCCcccccccccccccccCcc-cccccccH-HHHhhcCC--C---CcHHHHHHHHHHcCCC------cccccccC
Q 022663           85 TQLVCSGDLSYLGGSWSKTVGSAGEI-PLQGDFSA-EHMIFGVE--G---SDPVRRERLIELLDID------LQWRMHKV  151 (294)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~--~---~~~~~~~~~l~~l~l~------~~~~~~~L  151 (294)
                      ..     ..    ..++..++++++. .++ ..+. +++.+...  .   ...+...++++.+++.      .++++.+|
T Consensus        81 ~~-----~~----~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~L  150 (261)
T PRK14263         81 GV-----DP----VVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSL  150 (261)
T ss_pred             cc-----ch----HhhhhceEEEecCCccc-cccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccC
Confidence            00     00    0111223333332 222 2343 33332211  1   1123456677887763      24567899


Q ss_pred             CHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEee------
Q 022663          152 SDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQ------  225 (294)
Q Consensus       152 SgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~------  225 (294)
                      ||||+||++|||||+.+|++|||||||+|||+.++.+++++|.++. + +.|||++||+++++..+||+|++|+      
T Consensus       151 S~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~-~-~~tii~isH~~~~i~~~~d~v~~l~~~~~~~  228 (261)
T PRK14263        151 SGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK-K-DYTIALVTHNMQQAIRVADTTAFFSVDISQG  228 (261)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHHHHHHhCCEEEEEecccccc
Confidence            9999999999999999999999999999999999999999999884 3 6899999999999999999999996      


Q ss_pred             --CCeEEecccHHHHHHh
Q 022663          226 --DGELRRAEKLAELDEL  241 (294)
Q Consensus       226 --~G~i~~~g~~~~~~~~  241 (294)
                        +|+++..|+.+++.+.
T Consensus       229 ~~~G~i~~~g~~~~~~~~  246 (261)
T PRK14263        229 TRTGYLVEMGPTAQIFQN  246 (261)
T ss_pred             cCCceEEEeCCHHHHHhC
Confidence              8999999999888654

>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.2e-43  Score=338.09  Aligned_cols=216  Identities=21%  Similarity=0.299  Sum_probs=181.1

Q ss_pred             ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663           12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG   91 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~   91 (294)
                      ..|+++||+|.|+.+.+.+||+|+||+|+|||++|||||||+||||+.++|-.++.|. +|.|.++|.+...-.      
T Consensus       464 G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~Pt-sG~IllDG~~i~~~~------  536 (716)
T KOG0058|consen  464 GVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPT-SGRILLDGVPISDIN------  536 (716)
T ss_pred             ceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC-CCeEEECCeehhhcC------
Confidence            3699999999998765678999999999999999999999999999999999999997 999999998764321      


Q ss_pred             CcccccccccccccccCc-ccccccccHHHHhhcCCCCcHHHHHHHHHHcCC---------C----cccccccCCHHHHH
Q 022663           92 DLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMIFGVEGSDPVRRERLIELLDI---------D----LQWRMHKVSDGQRR  157 (294)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l---------~----~~~~~~~LSgGqkq  157 (294)
                           ...+++.++.+.| +.++.....+|+.++....+.+++..+.+..+.         .    -..+..+|||||||
T Consensus       537 -----~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQ  611 (716)
T KOG0058|consen  537 -----HKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQ  611 (716)
T ss_pred             -----HHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHH
Confidence                 1234566777766 445665556777888876666666555544331         1    23456689999999


Q ss_pred             HHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHH
Q 022663          158 RVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAE  237 (294)
Q Consensus       158 Rv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~  237 (294)
                      |+||||||+++|.||||||.||+||.++...+.+.|.+..+  +.|||+|.|.+..+++ ||+|+++++|++++.|+.++
T Consensus       612 RIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~--~rTVlvIAHRLSTV~~-Ad~Ivvi~~G~V~E~G~h~e  688 (716)
T KOG0058|consen  612 RIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ--GRTVLVIAHRLSTVRH-ADQIVVIDKGRVVEMGTHDE  688 (716)
T ss_pred             HHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc--CCeEEEEehhhhHhhh-ccEEEEEcCCeEEecccHHH
Confidence            99999999999999999999999999999999999988764  6899999999999885 99999999999999999999


Q ss_pred             HHHhh
Q 022663          238 LDELR  242 (294)
Q Consensus       238 ~~~~~  242 (294)
                      +++..
T Consensus       689 Ll~~~  693 (716)
T KOG0058|consen  689 LLSKP  693 (716)
T ss_pred             HhhCc
Confidence            98765

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=100.00  E-value=1.3e-42  Score=303.78  Aligned_cols=204  Identities=23%  Similarity=0.309  Sum_probs=152.0

Q ss_pred             CcccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccc
Q 022663           10 KLNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVC   89 (294)
Q Consensus        10 ~~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~   89 (294)
                      -.++|+++|++++|++..+.++|+++||+|++||+++|+||||||||||+++|+|+++|+ +|.+.++|.+.......  
T Consensus         8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~-~G~i~~~g~~~~~~~~~--   84 (226)
T cd03248           8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQ-GGQVLLDGKPISQYEHK--   84 (226)
T ss_pred             cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC-CcEEEECCCchHHcCHH--
Confidence            356899999999996422246999999999999999999999999999999999998876 88998888653211000  


Q ss_pred             cCCcccccccccccccccCcc-cccccccHH-HHhhcCCCCcH----H-----HHHHHHHHc--CCC--cccccccCCHH
Q 022663           90 SGDLSYLGGSWSKTVGSAGEI-PLQGDFSAE-HMIFGVEGSDP----V-----RRERLIELL--DID--LQWRMHKVSDG  154 (294)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~----~-----~~~~~l~~l--~l~--~~~~~~~LSgG  154 (294)
                               .....++++++. .++. .+.. ++.+.......    .     ...++++.+  ++.  .++++.+||||
T Consensus        85 ---------~~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG  154 (226)
T cd03248          85 ---------YLHSKVSLVGQEPVLFA-RSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGG  154 (226)
T ss_pred             ---------HHHhhEEEEecccHHHh-hhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHH
Confidence                     011122222221 1222 2332 22222211111    0     123456666  453  46778999999


Q ss_pred             HHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeE
Q 022663          155 QRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL  229 (294)
Q Consensus       155 qkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i  229 (294)
                      |+|||+|||||+.+|++|||||||+|||+.++..+.++|.++.+  +.|||++|||++++. .||+|++|++|++
T Consensus       155 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sh~~~~~~-~~d~i~~l~~g~i  226 (226)
T cd03248         155 QKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE--RRTVLVIAHRLSTVE-RADQILVLDGGRI  226 (226)
T ss_pred             HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC--CCEEEEEECCHHHHH-hCCEEEEecCCcC
Confidence            99999999999999999999999999999999999999998753  589999999999996 4999999999874

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=100.00  E-value=8.8e-43  Score=339.64  Aligned_cols=223  Identities=19%  Similarity=0.321  Sum_probs=165.8

Q ss_pred             EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCc--ccCCCceEEecCCcc-----ccccc
Q 022663           14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKH--MVGGRDVVQVLNRSS-----FHDTQ   86 (294)
Q Consensus        14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~--~~~~~g~i~~~~~~~-----~~~~~   86 (294)
                      |+++|++++|++   +++|+|+||+|.+||+++|+||||||||||+|+|+|++  .|+ +|.+.+.+...     ..+..
T Consensus         1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~-~G~i~~~~~~~~~~~~~~~~~   76 (520)
T TIGR03269         1 IEVKNLTKKFDG---KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPT-SGRIIYHVALCEKCGYVERPS   76 (520)
T ss_pred             CEEEEEEEEECC---eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCC-ceEEEEecccccccccccccc
Confidence            578999999965   57999999999999999999999999999999999986  455 88887752100     00000


Q ss_pred             cc------ccCCc-----cccc------ccccccccccCcc--cccccccH-HHHhhcC--CCCc----HHHHHHHHHHc
Q 022663           87 LV------CSGDL-----SYLG------GSWSKTVGSAGEI--PLQGDFSA-EHMIFGV--EGSD----PVRRERLIELL  140 (294)
Q Consensus        87 ~~------~~~~~-----~~~~------~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~--~~~~----~~~~~~~l~~l  140 (294)
                      ..      ....+     ....      ..++..++++++.  .++...+. +++.+..  ....    ..++.++++.+
T Consensus        77 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~  156 (520)
T TIGR03269        77 KVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMV  156 (520)
T ss_pred             ccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence            00      00000     0000      0112234444442  23343443 3333321  1111    23456788888


Q ss_pred             CCC--cccccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhh
Q 022663          141 DID--LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWA  218 (294)
Q Consensus       141 ~l~--~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~  218 (294)
                      ++.  .++++.+|||||||||+|||||+.+|++|||||||++||+.++..++++|.+++++.|.|||+||||++++..+|
T Consensus       157 gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~  236 (520)
T TIGR03269       157 QLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLS  236 (520)
T ss_pred             CChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhc
Confidence            885  478899999999999999999999999999999999999999999999999987767899999999999999999


Q ss_pred             ceEEEeeCCeEEecccHHHHHH
Q 022663          219 THLAYIQDGELRRAEKLAELDE  240 (294)
Q Consensus       219 d~v~~l~~G~i~~~g~~~~~~~  240 (294)
                      |+|++|++|+++..|+++++..
T Consensus       237 d~i~~l~~G~i~~~g~~~~~~~  258 (520)
T TIGR03269       237 DKAIWLENGEIKEEGTPDEVVA  258 (520)
T ss_pred             CEEEEEeCCEEeeecCHHHHHH
Confidence            9999999999999888887654

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=100.00  E-value=1.5e-42  Score=303.67  Aligned_cols=205  Identities=22%  Similarity=0.314  Sum_probs=156.9

Q ss_pred             cEEEcceEEEcCCCC-CCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcc---cCCCceEEecCCccccccccc
Q 022663           13 SIKVCGMQFSYEGND-KPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHM---VGGRDVVQVLNRSSFHDTQLV   88 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~-~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~---~~~~g~i~~~~~~~~~~~~~~   88 (294)
                      .+.++|++++|++.+ .+++|+|+||+|++||+++|+||||||||||+|+|+|++.   |+ +|.+.++|.+....    
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~-~G~i~~~g~~~~~~----   77 (226)
T cd03234           3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTT-SGQILFNGQPRKPD----   77 (226)
T ss_pred             cceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCC-ceEEEECCEECChH----
Confidence            478999999997521 2579999999999999999999999999999999999987   55 88888887643110    


Q ss_pred             ccCCcccccccccccccccCc-ccccccccHHH-Hhhc----C-CCCc----HHHHHH-HHHHcCCC--cccccccCCHH
Q 022663           89 CSGDLSYLGGSWSKTVGSAGE-IPLQGDFSAEH-MIFG----V-EGSD----PVRRER-LIELLDID--LQWRMHKVSDG  154 (294)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~----~-~~~~----~~~~~~-~l~~l~l~--~~~~~~~LSgG  154 (294)
                                .++..++++++ ..++..++..+ +.+.    . ....    ...... +++.+++.  .++.+.+||||
T Consensus        78 ----------~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G  147 (226)
T cd03234          78 ----------QFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGG  147 (226)
T ss_pred             ----------HhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHH
Confidence                      01122333332 22333334333 2221    1 1111    112233 67777764  46788999999


Q ss_pred             HHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCh-hHHHhhhceEEEeeCCeEEecc
Q 022663          155 QRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIF-DGLETWATHLAYIQDGELRRAE  233 (294)
Q Consensus       155 qkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~-~~~~~~~d~v~~l~~G~i~~~g  233 (294)
                      |+||++|||||+.+|++|||||||+|||+.++..+.++|.++.+ .+.|+|++||++ +++..+||++++|++|+++..|
T Consensus       148 ~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~-~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g  226 (226)
T cd03234         148 ERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLAR-RNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG  226 (226)
T ss_pred             HHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence            99999999999999999999999999999999999999998865 489999999998 5899999999999999998754

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=100.00  E-value=1.7e-42  Score=299.30  Aligned_cols=201  Identities=17%  Similarity=0.240  Sum_probs=152.9

Q ss_pred             ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663           12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG   91 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~   91 (294)
                      ..|+++|++++|++. ..++|+++||+|++|++++|+||||||||||+++|+|++.|. +|.+.++|.+......     
T Consensus         5 ~~l~~~~l~~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~-~G~i~~~g~~~~~~~~-----   77 (207)
T cd03369           5 GEIEVENLSVRYAPD-LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAE-EGKIEIDGIDISTIPL-----   77 (207)
T ss_pred             CeEEEEEEEEEeCCC-CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCC-CCeEEECCEEhHHCCH-----
Confidence            469999999999642 236999999999999999999999999999999999998776 8999888864321100     


Q ss_pred             CcccccccccccccccCcc-cccccccHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHHHccCCC
Q 022663           92 DLSYLGGSWSKTVGSAGEI-PLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFK  170 (294)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv~lAraL~~~p~  170 (294)
                            ..++..++++++. .++.. +..+++..........   +.+.++  .++++.+|||||+||++|||||+.+|+
T Consensus        78 ------~~~~~~i~~v~q~~~~~~~-tv~~~l~~~~~~~~~~---~~~~l~--~~~~~~~LS~G~~qrv~laral~~~p~  145 (207)
T cd03369          78 ------EDLRSSLTIIPQDPTLFSG-TIRSNLDPFDEYSDEE---IYGALR--VSEGGLNLSQGQRQLLCLARALLKRPR  145 (207)
T ss_pred             ------HHHHhhEEEEecCCcccCc-cHHHHhcccCCCCHHH---HHHHhh--ccCCCCcCCHHHHHHHHHHHHHhhCCC
Confidence                  0011223333332 22222 4433332111112222   233333  457789999999999999999999999


Q ss_pred             EEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEeccc
Q 022663          171 VLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEK  234 (294)
Q Consensus       171 iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~  234 (294)
                      +|||||||++||+.++..++++|.++.  .+.|+|++||+++++.. ||++++|++|+++..|+
T Consensus       146 llllDEP~~~LD~~~~~~l~~~l~~~~--~~~tiii~th~~~~~~~-~d~v~~l~~g~i~~~g~  206 (207)
T cd03369         146 VLVLDEATASIDYATDALIQKTIREEF--TNSTILTIAHRLRTIID-YDKILVMDAGEVKEYDH  206 (207)
T ss_pred             EEEEeCCcccCCHHHHHHHHHHHHHhc--CCCEEEEEeCCHHHHhh-CCEEEEEECCEEEecCC
Confidence            999999999999999999999999873  38999999999999976 99999999999987765

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2e-42  Score=327.55  Aligned_cols=214  Identities=25%  Similarity=0.356  Sum_probs=173.6

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      .++.+|+++.|++  ++++++|+||++++|+.++|+|+||||||||+++|+|+.+|. +|.+.++|.+...-.       
T Consensus       320 ei~~~~l~~~y~~--g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~-~G~I~vng~~l~~l~-------  389 (559)
T COG4988         320 EISLENLSFRYPD--GKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPT-QGEIRVNGIDLRDLS-------  389 (559)
T ss_pred             eeeecceEEecCC--CCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCC-CceEEECCccccccC-------
Confidence            3555699999986  348999999999999999999999999999999999998885 999999998653211       


Q ss_pred             cccccccccccccccCccc-ccccccHHHHhhcCCCCcHHHHHHHHHHcCCC--------ccc----ccccCCHHHHHHH
Q 022663           93 LSYLGGSWSKTVGSAGEIP-LQGDFSAEHMIFGVEGSDPVRRERLIELLDID--------LQW----RMHKVSDGQRRRV  159 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~--------~~~----~~~~LSgGqkqRv  159 (294)
                          ...|++++.++++.+ ++.....+|+.++....+.+...++++..++.        +|.    ....|||||+|||
T Consensus       390 ----~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRl  465 (559)
T COG4988         390 ----PEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRL  465 (559)
T ss_pred             ----HHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHH
Confidence                234566677776644 34444456666665555556666666665541        233    3345999999999


Q ss_pred             HHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHH
Q 022663          160 QICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELD  239 (294)
Q Consensus       160 ~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  239 (294)
                      ++||||+.+++++|+||||++||.++...+.+.|.++.+  ++|||+|||++..+.+ ||+|++|++|++++.|.++++.
T Consensus       466 aLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~--~ktvl~itHrl~~~~~-~D~I~vld~G~l~~~g~~~~L~  542 (559)
T COG4988         466 ALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK--QKTVLVITHRLEDAAD-ADRIVVLDNGRLVEQGTHEELS  542 (559)
T ss_pred             HHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh--CCeEEEEEcChHHHhc-CCEEEEecCCceeccCCHHHHh
Confidence            999999999999999999999999999999999999875  5899999999998875 9999999999999999999987


Q ss_pred             Hhhh
Q 022663          240 ELRN  243 (294)
Q Consensus       240 ~~~~  243 (294)
                      +..+
T Consensus       543 ~~~~  546 (559)
T COG4988         543 EKQG  546 (559)
T ss_pred             hcCc
Confidence            6543

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=100.00  E-value=1.1e-42  Score=303.30  Aligned_cols=206  Identities=27%  Similarity=0.435  Sum_probs=156.3

Q ss_pred             EEEcceEEEcCCCC-CCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           14 IKVCGMQFSYEGND-KPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        14 l~~~~ls~~y~~~~-~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      |+++|+++.|++.. .+.+|+|+||++++|++++|+||||||||||+++|+|+++|+ +|.+.++|.+........    
T Consensus         2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~~----   76 (220)
T TIGR02982         2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQ-EGSLKVLGQELYGASEKE----   76 (220)
T ss_pred             EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CeEEEECCEEhHhcCHhH----
Confidence            78999999996421 146999999999999999999999999999999999998776 899988886532110000    


Q ss_pred             cccccccccccccccCc-ccccccccHHH-HhhcC--C-CCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHH
Q 022663           93 LSYLGGSWSKTVGSAGE-IPLQGDFSAEH-MIFGV--E-GSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQI  161 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~--~-~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~l  161 (294)
                          ....+..++++++ ..++...+..+ +.+..  . ...    ...+.++++.+++.  .++.+.+||+|||||++|
T Consensus        77 ----~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~l  152 (220)
T TIGR02982        77 ----LVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAI  152 (220)
T ss_pred             ----HHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHH
Confidence                0001122333332 22333334333 22211  1 111    22456788888885  577899999999999999


Q ss_pred             HHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeE
Q 022663          162 CMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL  229 (294)
Q Consensus       162 AraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i  229 (294)
                      ||||+.+|++|||||||+|||+.++..+.++|.++.++.+.|||++|||++. .++||+|++|++|++
T Consensus       153 aral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~-~~~~d~v~~l~~g~~  219 (220)
T TIGR02982       153 ARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRI-LDVADRIVHMEDGKL  219 (220)
T ss_pred             HHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HhhCCEEEEEECCEE
Confidence            9999999999999999999999999999999999876568999999999985 579999999999986

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.1e-42  Score=336.68  Aligned_cols=208  Identities=23%  Similarity=0.312  Sum_probs=162.4

Q ss_pred             EcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCccc
Q 022663           16 VCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSY   95 (294)
Q Consensus        16 ~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~   95 (294)
                      ++|++++|++   +++|+|+||+|++||+++|+||||||||||+|+|+|++.|+ +|.+.++|.+.......        
T Consensus         1 ~~nl~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~~~~--------   68 (491)
T PRK10982          1 MSNISKSFPG---VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKD-SGSILFQGKEIDFKSSK--------   68 (491)
T ss_pred             CCceEEEeCC---EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC-ceEEEECCEECCCCCHH--------
Confidence            4789999975   57999999999999999999999999999999999998886 89999888653211000        


Q ss_pred             ccccccccccccCc-ccccccccHHHH-hhcC---CC--Cc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHHH
Q 022663           96 LGGSWSKTVGSAGE-IPLQGDFSAEHM-IFGV---EG--SD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQIC  162 (294)
Q Consensus        96 ~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~---~~--~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lA  162 (294)
                        ..++..++++++ ..++..++..+. .+..   ..  ..    .++..++++.+++.  .++++.+|||||||||+||
T Consensus        69 --~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA  146 (491)
T PRK10982         69 --EALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIA  146 (491)
T ss_pred             --HHHhCCEEEEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHH
Confidence              000112222222 223333444333 2221   11  01    12456678888875  5788999999999999999


Q ss_pred             HHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663          163 MGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL  238 (294)
Q Consensus       163 raL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~  238 (294)
                      |||+.+|++|||||||+|||+.++..++++|.++++ .|.|||+||||++++..+||++++|++|+++..++++++
T Consensus       147 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  221 (491)
T PRK10982        147 KAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKE-RGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGL  221 (491)
T ss_pred             HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhC
Confidence            999999999999999999999999999999999864 589999999999999999999999999999999887765

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=100.00  E-value=1.8e-42  Score=298.27  Aligned_cols=193  Identities=20%  Similarity=0.237  Sum_probs=147.7

Q ss_pred             cEEEcceEEEcCCC-CCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcc---cCCCceEEecCCccccccccc
Q 022663           13 SIKVCGMQFSYEGN-DKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHM---VGGRDVVQVLNRSSFHDTQLV   88 (294)
Q Consensus        13 ~l~~~~ls~~y~~~-~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~---~~~~g~i~~~~~~~~~~~~~~   88 (294)
                      .+.++||+|.|+.. .++.+|+++||+|++||+++|+||||||||||+++|+|++.   |+ +|.+.++|.+.....   
T Consensus         3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~-~G~i~i~g~~~~~~~---   78 (202)
T cd03233           3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSV-EGDIHYNGIPYKEFA---   78 (202)
T ss_pred             eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCc-ceEEEECCEECccch---
Confidence            58999999999642 23579999999999999999999999999999999999987   54 899988886432110   


Q ss_pred             ccCCcccccccccccccccCc-ccccccccHHHHh-hcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHHHc
Q 022663           89 CSGDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-FGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLL  166 (294)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv~lAraL~  166 (294)
                               ......++++++ ..++..++..+++ +..      .       +  ..++++.+||+||+||++|||||+
T Consensus        79 ---------~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~------~-------~--~~~~~~~~LS~Ge~qrl~laral~  134 (202)
T cd03233          79 ---------EKYPGEIIYVSEEDVHFPTLTVRETLDFAL------R-------C--KGNEFVRGISGGERKRVSIAEALV  134 (202)
T ss_pred             ---------hhhcceEEEEecccccCCCCcHHHHHhhhh------h-------h--ccccchhhCCHHHHHHHHHHHHHh
Confidence                     001112333332 2233334443332 110      0       0  146678899999999999999999


Q ss_pred             cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEE-eCChhHHHhhhceEEEeeCCeEEecc
Q 022663          167 HPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYA-THIFDGLETWATHLAYIQDGELRRAE  233 (294)
Q Consensus       167 ~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviiv-sHd~~~~~~~~d~v~~l~~G~i~~~g  233 (294)
                      .+|++|||||||++||+.+++.++++|.+++++.+.|+|++ +|+.+++.++||++++|++|+++..|
T Consensus       135 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g  202 (202)
T cd03233         135 SRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG  202 (202)
T ss_pred             hCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence            99999999999999999999999999999876546665554 56678899999999999999997653

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.6e-42  Score=314.92  Aligned_cols=216  Identities=22%  Similarity=0.256  Sum_probs=162.9

Q ss_pred             cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCccc----CCCceEEecCCccccccc
Q 022663           11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMV----GGRDVVQVLNRSSFHDTQ   86 (294)
Q Consensus        11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~----~~~g~i~~~~~~~~~~~~   86 (294)
                      .++|+++||+++|++   +.+|+++||+|.+||+++|+||||||||||+++|+|++.+    ..+|.+.++|.+......
T Consensus        43 ~~~l~i~nl~~~~~~---~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~  119 (305)
T PRK14264         43 DAKLSVEDLDVYYGD---DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGV  119 (305)
T ss_pred             CceEEEEEEEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence            347999999999975   5799999999999999999999999999999999998752    248999988865321000


Q ss_pred             ccccCCcccccccccccccccCcc-cccccccHHH-HhhcCC--------------CC-----cHHHHHHHHHHcCCC--
Q 022663           87 LVCSGDLSYLGGSWSKTVGSAGEI-PLQGDFSAEH-MIFGVE--------------GS-----DPVRRERLIELLDID--  143 (294)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~--------------~~-----~~~~~~~~l~~l~l~--  143 (294)
                           ..    ..++..++++++. .++.. +..+ +.+...              ..     ..+.+..+++.+++.  
T Consensus       120 -----~~----~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~  189 (305)
T PRK14264        120 -----NL----VELRKRVGMVFQSPNPFPK-SIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDE  189 (305)
T ss_pred             -----cH----HHHhhceEEEccCCccccc-cHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchh
Confidence                 00    0011123333321 12222 3322 222110              00     122345667777762  


Q ss_pred             ----cccccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhc
Q 022663          144 ----LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWAT  219 (294)
Q Consensus       144 ----~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d  219 (294)
                          .++++.+|||||+|||+|||||+.+|+||||||||+|||+.++..+.++|+++++  +.|||++|||++++..+||
T Consensus       190 ~~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~--~~tiiivtH~~~~i~~~~d  267 (305)
T PRK14264        190 VNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE--EYTVVVVTHNMQQAARISD  267 (305)
T ss_pred             hhHHhcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEEcCHHHHHHhcC
Confidence                3677899999999999999999999999999999999999999999999998864  4899999999999999999


Q ss_pred             eE-EEeeCCeEEecccHHHHHHh
Q 022663          220 HL-AYIQDGELRRAEKLAELDEL  241 (294)
Q Consensus       220 ~v-~~l~~G~i~~~g~~~~~~~~  241 (294)
                      ++ ++|++|+++..|+++++.+.
T Consensus       268 ~i~~~l~~G~i~~~g~~~~~~~~  290 (305)
T PRK14264        268 QTAVFLTGGELVEYDDTDKIFEN  290 (305)
T ss_pred             EEEEEecCCEEEEeCCHHHHHhC
Confidence            97 57899999999999887653

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=100.00  E-value=1.7e-42  Score=298.18  Aligned_cols=194  Identities=24%  Similarity=0.286  Sum_probs=152.8

Q ss_pred             EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCc
Q 022663           14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL   93 (294)
Q Consensus        14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~   93 (294)
                      |+++||++.|++   +.+|+++||+|++||+++|+|+||||||||+++|+|+++|+ +|.+.++|.+..... .      
T Consensus         1 l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~~~-~------   69 (201)
T cd03231           1 LEADELTCERDG---RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPL-AGRVLLNGGPLDFQR-D------   69 (201)
T ss_pred             CEEEEEEEEeCC---ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEECCEeccccc-H------
Confidence            478999999975   57999999999999999999999999999999999998876 889988876532110 0      


Q ss_pred             ccccccccccccccCc-ccccccccHHHHh-hcCCCCcHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHHHccCC
Q 022663           94 SYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-FGVEGSDPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMGLLHPF  169 (294)
Q Consensus        94 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL~~~p  169 (294)
                           ..+..++++++ ..++...+..+.+ +.......++..++++.+++.  .++++.+||||||||++|||||+.+|
T Consensus        70 -----~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p  144 (201)
T cd03231          70 -----SIARGLLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGR  144 (201)
T ss_pred             -----HhhhheEEeccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCC
Confidence                 11122333332 2233334443332 221112344567788888885  47789999999999999999999999


Q ss_pred             CEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEe
Q 022663          170 KVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYI  224 (294)
Q Consensus       170 ~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l  224 (294)
                      ++|||||||+|||+.++..+.+.|.++++ .|.|+|++|||...+..+|++++.+
T Consensus       145 ~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiii~sH~~~~~~~~~~~~~~~  198 (201)
T cd03231         145 PLWILDEPTTALDKAGVARFAEAMAGHCA-RGGMVVLTTHQDLGLSEAGARELDL  198 (201)
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCchhhhhccceeEec
Confidence            99999999999999999999999998764 4899999999999999999999877

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=100.00  E-value=1e-42  Score=337.64  Aligned_cols=212  Identities=22%  Similarity=0.318  Sum_probs=163.9

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCccc-CCCceEEecCCcccccccccccC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMV-GGRDVVQVLNRSSFHDTQLVCSG   91 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~-~~~g~i~~~~~~~~~~~~~~~~~   91 (294)
                      +|+++||+++|++   +++|+|+||+|++||+++|+||||||||||+|+|+|+++| ..+|.+.++|.+.......    
T Consensus         1 ~l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~----   73 (500)
T TIGR02633         1 LLEMKGIVKTFGG---VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIR----   73 (500)
T ss_pred             CEEEEeEEEEeCC---eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHH----
Confidence            4889999999965   5699999999999999999999999999999999998876 2489998888643211000    


Q ss_pred             CcccccccccccccccCc-ccccccccHHHH-hhcCC----C--Cc----HHHHHHHHHHcCCC--c-ccccccCCHHHH
Q 022663           92 DLSYLGGSWSKTVGSAGE-IPLQGDFSAEHM-IFGVE----G--SD----PVRRERLIELLDID--L-QWRMHKVSDGQR  156 (294)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~----~--~~----~~~~~~~l~~l~l~--~-~~~~~~LSgGqk  156 (294)
                            ...+..++++++ ..++..++..+. .+...    .  ..    ..+..++++.+++.  . ++++.+||||||
T Consensus        74 ------~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~  147 (500)
T TIGR02633        74 ------DTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQ  147 (500)
T ss_pred             ------HHHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHH
Confidence                  000112333333 223334444333 22211    0  11    12456778888885  2 467899999999


Q ss_pred             HHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHH
Q 022663          157 RRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLA  236 (294)
Q Consensus       157 qRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~  236 (294)
                      |||+|||||+.+|++|||||||+|||+.++..+.++|.++++ .|.|||+||||++++..+||+|++|++|+++..++++
T Consensus       148 qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~  226 (500)
T TIGR02633       148 QLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKA-HGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMS  226 (500)
T ss_pred             HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcc
Confidence            999999999999999999999999999999999999999864 5899999999999999999999999999999888765


Q ss_pred             HH
Q 022663          237 EL  238 (294)
Q Consensus       237 ~~  238 (294)
                      ++
T Consensus       227 ~~  228 (500)
T TIGR02633       227 TM  228 (500)
T ss_pred             cC
Confidence            43

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.3e-42  Score=307.06  Aligned_cols=218  Identities=20%  Similarity=0.191  Sum_probs=163.9

Q ss_pred             cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccC----CCceEEecCCccccccc
Q 022663           11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVG----GRDVVQVLNRSSFHDTQ   86 (294)
Q Consensus        11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~----~~g~i~~~~~~~~~~~~   86 (294)
                      .++|+++|++++|++   +++|+|+||+|++||+++|+|+||||||||+++|+|+..|.    .+|.+.++|........
T Consensus        14 ~~~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~   90 (265)
T PRK14252         14 QQKSEVNKLNFYYGG---YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSP   90 (265)
T ss_pred             CceEEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccc
Confidence            457999999999975   47999999999999999999999999999999999987641    47888887754310000


Q ss_pred             ccccCCcccccccccccccccCc-ccccccccH-HHHhhcC--CCC-----cHHHHHHHHHHcCCC------cccccccC
Q 022663           87 LVCSGDLSYLGGSWSKTVGSAGE-IPLQGDFSA-EHMIFGV--EGS-----DPVRRERLIELLDID------LQWRMHKV  151 (294)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~--~~~-----~~~~~~~~l~~l~l~------~~~~~~~L  151 (294)
                           ..  ....++..++++++ ..++.. +. +++.+..  ...     ..+....+++.+++.      .++.+.+|
T Consensus        91 -----~~--~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~L  162 (265)
T PRK14252         91 -----EV--DPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNL  162 (265)
T ss_pred             -----cc--CHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccC
Confidence                 00  00011122333333 122232 33 3332221  111     113345566666652      35778999


Q ss_pred             CHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEe
Q 022663          152 SDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRR  231 (294)
Q Consensus       152 SgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~  231 (294)
                      ||||+|||+|||||+.+|++|||||||+|||+.++..+.+.|.++.+  +.|||+|||+++++..+||++++|++|+++.
T Consensus       163 S~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~--~~tiiivth~~~~~~~~~d~i~~l~~G~i~~  240 (265)
T PRK14252        163 SGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN--KVTILIVTHNMQQAARVSDYTAYMYMGELIE  240 (265)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh--CCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence            99999999999999999999999999999999999999999998753  6899999999999999999999999999999


Q ss_pred             cccHHHHHHh
Q 022663          232 AEKLAELDEL  241 (294)
Q Consensus       232 ~g~~~~~~~~  241 (294)
                      .|+.+++...
T Consensus       241 ~g~~~~~~~~  250 (265)
T PRK14252        241 FGATDTIFIK  250 (265)
T ss_pred             eCCHHHHHhC
Confidence            9998887643

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.7e-42  Score=304.25  Aligned_cols=215  Identities=20%  Similarity=0.246  Sum_probs=163.2

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcc--c--CCCceEEecCCccccccccc
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHM--V--GGRDVVQVLNRSSFHDTQLV   88 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~--~--~~~g~i~~~~~~~~~~~~~~   88 (294)
                      +|+++||++.|++   +++|+|+||+|++||+++|+||||||||||+++|+|+..  |  ..+|.+.++|.+......  
T Consensus         3 ~l~~~~v~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~--   77 (250)
T PRK14266          3 RIEVENLNTYFDD---AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAV--   77 (250)
T ss_pred             EEEEEeEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccc--
Confidence            6899999999975   569999999999999999999999999999999999753  3  137899988865321000  


Q ss_pred             ccCCcccccccccccccccCc-ccccccccHHHHhhcC--CC-Cc----HHHHHHHHHHcCCC------cccccccCCHH
Q 022663           89 CSGDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMIFGV--EG-SD----PVRRERLIELLDID------LQWRMHKVSDG  154 (294)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~-~~----~~~~~~~l~~l~l~------~~~~~~~LSgG  154 (294)
                         ..    ......++++++ ..++.....+++.+..  .. .+    ..+..++++.+++.      .++++.+||||
T Consensus        78 ---~~----~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G  150 (250)
T PRK14266         78 ---DV----VELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGG  150 (250)
T ss_pred             ---cH----HHHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHH
Confidence               00    001122333332 2223322223332221  11 11    12345566777752      36778999999


Q ss_pred             HHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEeccc
Q 022663          155 QRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEK  234 (294)
Q Consensus       155 qkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~  234 (294)
                      |+||++|||||+.+|++|||||||+|||+.++..+.++|.++. + +.|||++||+++++..+||++++|++|+++..|+
T Consensus       151 q~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~-~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~  228 (250)
T PRK14266        151 QQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLK-E-DYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGL  228 (250)
T ss_pred             HHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCC
Confidence            9999999999999999999999999999999999999999874 3 7899999999999999999999999999999999


Q ss_pred             HHHHHHh
Q 022663          235 LAELDEL  241 (294)
Q Consensus       235 ~~~~~~~  241 (294)
                      ++++...
T Consensus       229 ~~~~~~~  235 (250)
T PRK14266        229 TDQIFIN  235 (250)
T ss_pred             HHHHHhC
Confidence            9887544

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=100.00  E-value=4.3e-42  Score=327.29  Aligned_cols=206  Identities=19%  Similarity=0.303  Sum_probs=163.4

Q ss_pred             cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663           11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS   90 (294)
Q Consensus        11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~   90 (294)
                      .++++++||+++|++...+++|+|+||+|++|++++|+||||||||||+++|+|++.|+ +|.+.++|....        
T Consensus        19 ~~mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~-sGeI~I~G~~~~--------   89 (549)
T PRK13545         19 KPFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPN-KGTVDIKGSAAL--------   89 (549)
T ss_pred             cceeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCC-ceEEEECCEeee--------
Confidence            35799999999997532246999999999999999999999999999999999998876 889888775311        


Q ss_pred             CCcccccccccccccccCcccccccccHHHHh-hc--CCCCcH----HHHHHHHHHcCCC--cccccccCCHHHHHHHHH
Q 022663           91 GDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMI-FG--VEGSDP----VRRERLIELLDID--LQWRMHKVSDGQRRRVQI  161 (294)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~----~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~l  161 (294)
                        +.+.             ..+...++..+.+ +.  ......    +....+++.+++.  .++++.+||||||||++|
T Consensus        90 --i~~~-------------~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaL  154 (549)
T PRK13545         90 --IAIS-------------SGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGF  154 (549)
T ss_pred             --EEec-------------cccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHH
Confidence              0000             0011122332221 11  011111    2345677888885  578899999999999999


Q ss_pred             HHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHHh
Q 022663          162 CMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDEL  241 (294)
Q Consensus       162 AraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  241 (294)
                      ||||+.+|++|||||||+|||+.++..+++.|.++. +.|.|||++|||++++..+||++++|++|+++..|+++++...
T Consensus       155 ArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~-~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~~  233 (549)
T PRK13545        155 AISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFK-EQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDH  233 (549)
T ss_pred             HHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHH-hCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhh
Confidence            999999999999999999999999999999999875 4589999999999999999999999999999999998887653

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=100.00  E-value=4.2e-42  Score=304.90  Aligned_cols=205  Identities=20%  Similarity=0.275  Sum_probs=157.5

Q ss_pred             EEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcc
Q 022663           15 KVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLS   94 (294)
Q Consensus        15 ~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~   94 (294)
                      +++||+++       .+|+|+||+|++||+++|+||||||||||+++|+|+++ . +|.+.++|.+.......       
T Consensus         2 ~~~~l~~~-------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~-~G~i~~~g~~i~~~~~~-------   65 (248)
T PRK03695          2 QLNDVAVS-------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-G-SGSIQFAGQPLEAWSAA-------   65 (248)
T ss_pred             cccccchh-------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-C-CeEEEECCEecCcCCHH-------
Confidence            57788874       16999999999999999999999999999999999874 4 79999888653211000       


Q ss_pred             cccccccccccccCc-ccccccccHHHH-hhcCC-CCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHHH
Q 022663           95 YLGGSWSKTVGSAGE-IPLQGDFSAEHM-IFGVE-GSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMGL  165 (294)
Q Consensus        95 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~-~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL  165 (294)
                          .+...++++++ ..++...+..++ .+... ...    .+...++++.+++.  .++++.+||||||||++|||||
T Consensus        66 ----~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al  141 (248)
T PRK03695         66 ----ELARHRAYLSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVV  141 (248)
T ss_pred             ----HHhhheEEecccCccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHH
Confidence                00111222222 122223343332 22211 111    23456788888885  4788999999999999999999


Q ss_pred             cc-------CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663          166 LH-------PFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL  238 (294)
Q Consensus       166 ~~-------~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~  238 (294)
                      +.       +|++|||||||+|||+.++..+.++|.++.+ .|.|||++|||++++..+||++++|++|+++..|+.+++
T Consensus       142 ~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~-~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  220 (248)
T PRK03695        142 LQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQ-QGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEV  220 (248)
T ss_pred             hccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence            97       6799999999999999999999999998864 489999999999999999999999999999999988876


Q ss_pred             HH
Q 022663          239 DE  240 (294)
Q Consensus       239 ~~  240 (294)
                      .+
T Consensus       221 ~~  222 (248)
T PRK03695        221 LT  222 (248)
T ss_pred             hC
Confidence            43

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=100.00  E-value=3e-42  Score=296.40  Aligned_cols=186  Identities=21%  Similarity=0.239  Sum_probs=144.5

Q ss_pred             EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCc--ccCCCceEEecCCcccccccccccC
Q 022663           14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKH--MVGGRDVVQVLNRSSFHDTQLVCSG   91 (294)
Q Consensus        14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~--~~~~~g~i~~~~~~~~~~~~~~~~~   91 (294)
                      |+++|++++|++   +.+|+|+||+|.+||+++|+||||||||||+++|+|+.  .|+ .|.+.++|.+........   
T Consensus         1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~-~G~i~~~g~~~~~~~~~~---   73 (200)
T cd03217           1 LEIKDLHVSVGG---KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVT-EGEILFKGEDITDLPPEE---   73 (200)
T ss_pred             CeEEEEEEEeCC---EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCC-ccEEEECCEECCcCCHHH---
Confidence            478999999975   47999999999999999999999999999999999984  454 899998886532210000   


Q ss_pred             CcccccccccccccccCcc-cccccccHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHHHccCCC
Q 022663           92 DLSYLGGSWSKTVGSAGEI-PLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFK  170 (294)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv~lAraL~~~p~  170 (294)
                             ..+..++++++. .+++..+..+               .+       +....+|||||+||++|||||+.+|+
T Consensus        74 -------~~~~~i~~v~q~~~~~~~~~~~~---------------~l-------~~~~~~LS~G~~qrv~laral~~~p~  124 (200)
T cd03217          74 -------RARLGIFLAFQYPPEIPGVKNAD---------------FL-------RYVNEGFSGGEKKRNEILQLLLLEPD  124 (200)
T ss_pred             -------HhhCcEEEeecChhhccCccHHH---------------HH-------hhccccCCHHHHHHHHHHHHHhcCCC
Confidence                   001112222221 1122222211               11       12346899999999999999999999


Q ss_pred             EEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHh-hhceEEEeeCCeEEecccHH
Q 022663          171 VLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLET-WATHLAYIQDGELRRAEKLA  236 (294)
Q Consensus       171 iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~-~~d~v~~l~~G~i~~~g~~~  236 (294)
                      +|||||||++||+.++..++++|.++.+ .+.|||++||+++++.. +||++++|++|++.+.++.+
T Consensus       125 illlDEPt~~LD~~~~~~l~~~L~~~~~-~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~~~~  190 (200)
T cd03217         125 LAILDEPDSGLDIDALRLVAEVINKLRE-EGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSGDKE  190 (200)
T ss_pred             EEEEeCCCccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEccHH
Confidence            9999999999999999999999998864 48999999999999988 79999999999999988543

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=100.00  E-value=2.2e-42  Score=291.91  Aligned_cols=177  Identities=24%  Similarity=0.418  Sum_probs=139.7

Q ss_pred             EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCc
Q 022663           14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL   93 (294)
Q Consensus        14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~   93 (294)
                      |+++|++++|++. ..++|+|+||+|++||+++|+||||||||||+++|+|+..|. +|.+.++|.+....         
T Consensus         1 i~~~~~~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~-~G~i~~~g~~~~~~---------   69 (178)
T cd03247           1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQ-QGEITLDGVPVSDL---------   69 (178)
T ss_pred             CEEEEEEEEeCCC-CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC-CCEEEECCEEHHHH---------
Confidence            4789999999652 136999999999999999999999999999999999998776 88998887643110         


Q ss_pred             ccccccccccccccCccc-ccccccHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHHHccCCCEE
Q 022663           94 SYLGGSWSKTVGSAGEIP-LQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVL  172 (294)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv~lAraL~~~p~iL  172 (294)
                         ...++..++++++.+ ++. .+..++              +           +.+|||||+||++|||||+.+|++|
T Consensus        70 ---~~~~~~~i~~~~q~~~~~~-~tv~~~--------------i-----------~~~LS~G~~qrv~laral~~~p~~l  120 (178)
T cd03247          70 ---EKALSSLISVLNQRPYLFD-TTLRNN--------------L-----------GRRFSGGERQRLALARILLQDAPIV  120 (178)
T ss_pred             ---HHHHHhhEEEEccCCeeec-ccHHHh--------------h-----------cccCCHHHHHHHHHHHHHhcCCCEE
Confidence               001112223322211 111 111110              0           6789999999999999999999999


Q ss_pred             EeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecc
Q 022663          173 LLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAE  233 (294)
Q Consensus       173 lLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g  233 (294)
                      ||||||++||+.+++.+++.|.++.  .+.|||++|||++++. .||++++|++|++++.|
T Consensus       121 llDEP~~~LD~~~~~~l~~~l~~~~--~~~tii~~sh~~~~~~-~~d~~~~l~~g~i~~~~  178 (178)
T cd03247         121 LLDEPTVGLDPITERQLLSLIFEVL--KDKTLIWITHHLTGIE-HMDKILFLENGKIIMQG  178 (178)
T ss_pred             EEECCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHHHH-hCCEEEEEECCEEEecC
Confidence            9999999999999999999999874  3799999999999986 69999999999997653

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=100.00  E-value=2.6e-42  Score=290.21  Aligned_cols=172  Identities=26%  Similarity=0.376  Sum_probs=135.1

Q ss_pred             EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCc
Q 022663           14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL   93 (294)
Q Consensus        14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~   93 (294)
                      |+++|++++|++. ..++++++||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|.+......       
T Consensus         1 i~~~~l~~~~~~~-~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~-~G~i~~~g~~~~~~~~-------   71 (173)
T cd03246           1 LEVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPT-SGRVRLDGADISQWDP-------   71 (173)
T ss_pred             CEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCC-CCeEEECCEEcccCCH-------
Confidence            4789999999642 246999999999999999999999999999999999998876 8899888764321000       


Q ss_pred             ccccccccccccccCccc-ccccccHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHHHccCCCEE
Q 022663           94 SYLGGSWSKTVGSAGEIP-LQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVL  172 (294)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv~lAraL~~~p~iL  172 (294)
                          ..+...++++++.+ +++. +..+                  .+          |||||+||++|||||+.+|++|
T Consensus        72 ----~~~~~~i~~~~q~~~~~~~-tv~~------------------~l----------LS~G~~qrv~la~al~~~p~~l  118 (173)
T cd03246          72 ----NELGDHVGYLPQDDELFSG-SIAE------------------NI----------LSGGQRQRLGLARALYGNPRIL  118 (173)
T ss_pred             ----HHHHhheEEECCCCccccC-cHHH------------------HC----------cCHHHHHHHHHHHHHhcCCCEE
Confidence                00111222222211 1111 1111                  01          9999999999999999999999


Q ss_pred             EeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeE
Q 022663          173 LLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL  229 (294)
Q Consensus       173 lLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i  229 (294)
                      ||||||++||+.++..+++.|.++.+ .|.|||++|||++++. +||++++|++|++
T Consensus       119 llDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sh~~~~~~-~~d~v~~l~~G~i  173 (173)
T cd03246         119 VLDEPNSHLDVEGERALNQAIAALKA-AGATRIVIAHRPETLA-SADRILVLEDGRV  173 (173)
T ss_pred             EEECCccccCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHH-hCCEEEEEECCCC
Confidence            99999999999999999999998864 5899999999999885 7999999999974

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=100.00  E-value=4.1e-42  Score=339.53  Aligned_cols=211  Identities=24%  Similarity=0.324  Sum_probs=167.4

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      .|+++||++.|.+  ++++|+|+||+|++|++++|+||||||||||+++|+|++ |. +|.+.++|.+...-.       
T Consensus       349 ~i~~~~vsf~~~~--~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~-~G~I~i~g~~i~~~~-------  417 (588)
T PRK11174        349 TIEAEDLEILSPD--GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PY-QGSLKINGIELRELD-------  417 (588)
T ss_pred             eEEEEeeEEeccC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CC-CcEEEECCEecccCC-------
Confidence            5999999987643  257999999999999999999999999999999999999 76 899999987643211       


Q ss_pred             cccccccccccccccCcc-cccccccHHHHhhcCCCCcHHHHHHHHHHcCCC---------cc----cccccCCHHHHHH
Q 022663           93 LSYLGGSWSKTVGSAGEI-PLQGDFSAEHMIFGVEGSDPVRRERLIELLDID---------LQ----WRMHKVSDGQRRR  158 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~---------~~----~~~~~LSgGqkqR  158 (294)
                          ...+++.++++++. .++.....+|+.++....+.++..++++..++.         .+    .....||||||||
T Consensus       418 ----~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQR  493 (588)
T PRK11174        418 ----PESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQR  493 (588)
T ss_pred             ----HHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHH
Confidence                12234456666653 344444445555654444555555555554431         12    3445799999999


Q ss_pred             HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663          159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL  238 (294)
Q Consensus       159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~  238 (294)
                      ++|||||+++|++||||||||+||+.+.+.+.+.|.++.  .++|+|+|||+++.+. .||+|++|++|++++.|+.+++
T Consensus       494 ialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~--~~~TvIiItHrl~~i~-~aD~Iivl~~G~i~e~G~~~eL  570 (588)
T PRK11174        494 LALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS--RRQTTLMVTHQLEDLA-QWDQIWVMQDGQIVQQGDYAEL  570 (588)
T ss_pred             HHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--CCCEEEEEecChHHHH-hCCEEEEEeCCeEeecCCHHHH
Confidence            999999999999999999999999999999999998764  4789999999998876 5999999999999999999998


Q ss_pred             HHh
Q 022663          239 DEL  241 (294)
Q Consensus       239 ~~~  241 (294)
                      .+.
T Consensus       571 ~~~  573 (588)
T PRK11174        571 SQA  573 (588)
T ss_pred             Hhc
Confidence            764

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=100.00  E-value=8.7e-43  Score=298.92  Aligned_cols=210  Identities=25%  Similarity=0.396  Sum_probs=164.4

Q ss_pred             cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663           11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS   90 (294)
Q Consensus        11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~   90 (294)
                      +++|+++||+++|++   +++|+|||++|++||.++|+|||||||||||++++|.+.|. +|.+.+.|...-..      
T Consensus        29 ~~li~l~~v~v~r~g---k~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~ps-sg~~~~~G~~~G~~------   98 (257)
T COG1119          29 EPLIELKNVSVRRNG---KKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPS-SGDVTLLGRRFGKG------   98 (257)
T ss_pred             cceEEecceEEEECC---EeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCC-CCceeeeeeeccCC------
Confidence            457999999999987   68999999999999999999999999999999999998887 88888777653221      


Q ss_pred             CCcccccccccccccccCc---ccccccccHHHHh-------hcCC--CC---cHHHHHHHHHHcCCC--cccccccCCH
Q 022663           91 GDLSYLGGSWSKTVGSAGE---IPLQGDFSAEHMI-------FGVE--GS---DPVRRERLIELLDID--LQWRMHKVSD  153 (294)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-------~~~~--~~---~~~~~~~~l~~l~l~--~~~~~~~LSg  153 (294)
                       +.  . .++++.++++..   ..+....++.++.       .+..  ..   +..++..+++.+++.  .+++..+||-
T Consensus        99 -~~--~-~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~  174 (257)
T COG1119          99 -ET--I-FELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQ  174 (257)
T ss_pred             -cc--h-HHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCH
Confidence             11  1 123344443321   1111122222221       1111  11   223456788888885  5889999999


Q ss_pred             HHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhc-CcEEEEEeCChhHHHhhhceEEEeeCCeEEec
Q 022663          154 GQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQR-GATIVYATHIFDGLETWATHLAYIQDGELRRA  232 (294)
Q Consensus       154 GqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~-g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~  232 (294)
                      ||||||.|||||+.+|++|||||||+|||...+..+.+.|.+++... +.++|+|||..+++....++++.+++|+++..
T Consensus       175 Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~  254 (257)
T COG1119         175 GEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQ  254 (257)
T ss_pred             hHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceeec
Confidence            99999999999999999999999999999999999999999987542 57899999999999999999999999999887


Q ss_pred             cc
Q 022663          233 EK  234 (294)
Q Consensus       233 g~  234 (294)
                      |.
T Consensus       255 g~  256 (257)
T COG1119         255 GK  256 (257)
T ss_pred             cc
Confidence            63

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.1e-42  Score=336.22  Aligned_cols=210  Identities=18%  Similarity=0.253  Sum_probs=160.9

Q ss_pred             ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccc-cccc
Q 022663           12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQ-LVCS   90 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~-~~~~   90 (294)
                      ++|+++|+++.|.     .+|+|+||+|++||+++|+||||||||||+|+|+|++.|+ +|.+.++|.+...... ....
T Consensus       264 ~~l~~~~l~~~~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~-~G~I~~~g~~~~~~~~~~~~~  337 (510)
T PRK09700        264 TVFEVRNVTSRDR-----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRA-GGEIRLNGKDISPRSPLDAVK  337 (510)
T ss_pred             cEEEEeCccccCC-----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCC-CCeEEECCEECCCCCHHHHHH
Confidence            4799999999762     3899999999999999999999999999999999998886 8999988864321000 0001


Q ss_pred             CCcccccccccccccccCcccccccccHHHHh-hcCC----------C---C--cHHHHHHHHHHcCCC---cccccccC
Q 022663           91 GDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMI-FGVE----------G---S--DPVRRERLIELLDID---LQWRMHKV  151 (294)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----------~---~--~~~~~~~~l~~l~l~---~~~~~~~L  151 (294)
                      ..+.++++...       ...+++.++..+.+ +...          .   .  ....+.++++.+++.   .++++.+|
T Consensus       338 ~~i~~v~q~~~-------~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~L  410 (510)
T PRK09700        338 KGMAYITESRR-------DNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITEL  410 (510)
T ss_pred             CCcEEccCccc-------cCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccC
Confidence            12223222100       01233334443322 2110          0   0  112346788888884   47889999


Q ss_pred             CHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEe
Q 022663          152 SDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRR  231 (294)
Q Consensus       152 SgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~  231 (294)
                      ||||||||+|||||+.+|++|||||||+|||+.++..++++|.++++ .|.|||+||||++++..+||++++|++|+++.
T Consensus       411 SgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~  489 (510)
T PRK09700        411 SGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLAD-DGKVILMVSSELPEIITVCDRIAVFCEGRLTQ  489 (510)
T ss_pred             ChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHH-CCCEEEEEcCCHHHHHhhCCEEEEEECCEEEE
Confidence            99999999999999999999999999999999999999999999875 58999999999999999999999999999988


Q ss_pred             cccH
Q 022663          232 AEKL  235 (294)
Q Consensus       232 ~g~~  235 (294)
                      .++.
T Consensus       490 ~~~~  493 (510)
T PRK09700        490 ILTN  493 (510)
T ss_pred             EecC
Confidence            7654

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.8e-42  Score=286.86  Aligned_cols=207  Identities=25%  Similarity=0.370  Sum_probs=166.2

Q ss_pred             ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663           12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG   91 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~   91 (294)
                      +++.+++++.+|++. ...+|+|+|++|.+||.++++|||||||||||++++|+..|+ .|.+.++++......     .
T Consensus         2 ~~l~~~~~sl~y~g~-~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~-~G~i~l~~r~i~gPg-----a   74 (259)
T COG4525           2 CMLNVSHLSLSYEGK-PRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPS-RGSIQLNGRRIEGPG-----A   74 (259)
T ss_pred             ceeehhheEEecCCc-chhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcc-cceEEECCEeccCCC-----c
Confidence            578999999999873 245999999999999999999999999999999999999987 899998887542110     0


Q ss_pred             CcccccccccccccccCc-ccccccccH-HHHhhcCC--CCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHH
Q 022663           92 DLSYLGGSWSKTVGSAGE-IPLQGDFSA-EHMIFGVE--GSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQI  161 (294)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~--~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~l  161 (294)
                      +.           +.+++ ..+.+.++. +|..|++.  +..    .+...+.+...++.  .++++.+|||||||||.|
T Consensus        75 er-----------gvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGi  143 (259)
T COG4525          75 ER-----------GVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGI  143 (259)
T ss_pred             cc-----------eeEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHH
Confidence            11           11122 233444443 44455542  222    22345667777775  478899999999999999


Q ss_pred             HHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEee--CCeEEecccHH
Q 022663          162 CMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQ--DGELRRAEKLA  236 (294)
Q Consensus       162 AraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~--~G~i~~~g~~~  236 (294)
                      ||||+.+|++|+||||+++||.-+++++.++|.++.++.|+.+++||||++++.-+++++++|.  .|+|+..-+++
T Consensus       144 ARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~d  220 (259)
T COG4525         144 ARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPLD  220 (259)
T ss_pred             HHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999998  47888765543

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=100.00  E-value=7.2e-42  Score=343.21  Aligned_cols=210  Identities=22%  Similarity=0.254  Sum_probs=168.1

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      .|+++||+|+|++. ++++|+|+||+|++||.++|+|+||||||||+|+|+|++.|+ +|.+.++|.+...-.       
T Consensus       451 ~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~-~G~I~idg~~i~~~~-------  521 (686)
T TIGR03797       451 AIEVDRVTFRYRPD-GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPE-SGSVFYDGQDLAGLD-------  521 (686)
T ss_pred             eEEEEEEEEEcCCC-CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CCEEEECCEEcCcCC-------
Confidence            59999999999642 357999999999999999999999999999999999999887 999999997643211       


Q ss_pred             cccccccccccccccCc-ccccccccHHHHhhcCCCCcHHHHHHHHHHcCCC---------cc----cccccCCHHHHHH
Q 022663           93 LSYLGGSWSKTVGSAGE-IPLQGDFSAEHMIFGVEGSDPVRRERLIELLDID---------LQ----WRMHKVSDGQRRR  158 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~---------~~----~~~~~LSgGqkqR  158 (294)
                          ...+++.++++++ ..++.....+|+.++.. .+.++..++++..++.         .+    .....||||||||
T Consensus       522 ----~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~-~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQR  596 (686)
T TIGR03797       522 ----VQAVRRQLGVVLQNGRLMSGSIFENIAGGAP-LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQR  596 (686)
T ss_pred             ----HHHHHhccEEEccCCccCcccHHHHHhcCCC-CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHH
Confidence                1123445555555 33444433455555533 4555566666665542         12    2345799999999


Q ss_pred             HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663          159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL  238 (294)
Q Consensus       159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~  238 (294)
                      ++|||||+++|++||||||||+||+.+.+.+.+.|.++    ++|+|+|||+++.+.. ||+|++|++|++++.|+.+++
T Consensus       597 ialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~----~~T~IiItHr~~~i~~-~D~Iivl~~G~iv~~G~~~~L  671 (686)
T TIGR03797       597 LLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL----KVTRIVIAHRLSTIRN-ADRIYVLDAGRVVQQGTYDEL  671 (686)
T ss_pred             HHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh----CCeEEEEecChHHHHc-CCEEEEEECCEEEEECCHHHH
Confidence            99999999999999999999999999999999998764    5799999999998865 999999999999999999998


Q ss_pred             HHh
Q 022663          239 DEL  241 (294)
Q Consensus       239 ~~~  241 (294)
                      .+.
T Consensus       672 l~~  674 (686)
T TIGR03797       672 MAR  674 (686)
T ss_pred             HhC
Confidence            764

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=100.00  E-value=2.2e-42  Score=298.06  Aligned_cols=196  Identities=21%  Similarity=0.298  Sum_probs=147.1

Q ss_pred             EcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCccc
Q 022663           16 VCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSY   95 (294)
Q Consensus        16 ~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~   95 (294)
                      ++||++.|++   +++|+|+||+|++||+++|+||||||||||+++|+|++.|+ .|.+.++|.+.......    ..  
T Consensus         1 i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~----~~--   70 (206)
T TIGR03608         1 LKNISKKFGD---KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFD-SGQVYLNGKETPPLNSK----KA--   70 (206)
T ss_pred             CcceEEEECC---EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC-CeEEEECCEEccccchh----hH--
Confidence            4799999975   47999999999999999999999999999999999998876 88998888653210000    00  


Q ss_pred             ccccccccccccCc-ccccccccHHHHh-hcC--CCC----cHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHHH
Q 022663           96 LGGSWSKTVGSAGE-IPLQGDFSAEHMI-FGV--EGS----DPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMGL  165 (294)
Q Consensus        96 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~--~~~----~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL  165 (294)
                       .......++++.+ ..++...+..+++ +..  ...    ..+++.++++.+++.  .++++.+|||||+||++|||||
T Consensus        71 -~~~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral  149 (206)
T TIGR03608        71 -SKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAI  149 (206)
T ss_pred             -HHHHHhCeeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHH
Confidence             0001112233222 2233334443322 211  111    123456788888885  5788899999999999999999


Q ss_pred             ccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEe
Q 022663          166 LHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYI  224 (294)
Q Consensus       166 ~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l  224 (294)
                      +.+|++|||||||+|||+.++..+.++|+++.+ .|.|||++||+++++ .+||++++|
T Consensus       150 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sh~~~~~-~~~d~i~~l  206 (206)
T TIGR03608       150 LKDPPLILADEPTGSLDPKNRDEVLDLLLELND-EGKTIIIVTHDPEVA-KQADRVIEL  206 (206)
T ss_pred             HcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHH-hhcCEEEeC
Confidence            999999999999999999999999999998865 489999999999976 589999875

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=100.00  E-value=1.9e-42  Score=335.82  Aligned_cols=217  Identities=15%  Similarity=0.147  Sum_probs=162.8

Q ss_pred             ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccc-cccc
Q 022663           12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQ-LVCS   90 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~-~~~~   90 (294)
                      ++|+++|++++|+++++..+|+|+||+|.+||+++|+||||||||||+|+|+|++.|..+|.+.++|.+...... ....
T Consensus       256 ~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~  335 (500)
T TIGR02633       256 VILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIR  335 (500)
T ss_pred             ceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHh
Confidence            379999999999421124699999999999999999999999999999999999875348999888864321000 0001


Q ss_pred             CCcccccccccccccccCcccccccccHHHHh-hc----CC---CCc----HHHHHHHHHHcCCC---cccccccCCHHH
Q 022663           91 GDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMI-FG----VE---GSD----PVRRERLIELLDID---LQWRMHKVSDGQ  155 (294)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~---~~~----~~~~~~~l~~l~l~---~~~~~~~LSgGq  155 (294)
                      ..+.++++....       ..+++.++..+.+ +.    ..   ...    ...+.++++.+++.   .++++.+|||||
T Consensus       336 ~~i~~v~q~~~~-------~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq  408 (500)
T TIGR02633       336 AGIAMVPEDRKR-------HGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGN  408 (500)
T ss_pred             CCCEEcCcchhh-------CCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHH
Confidence            122332222100       0123333333222 11    00   111    22456788888884   478899999999


Q ss_pred             HHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccH
Q 022663          156 RRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKL  235 (294)
Q Consensus       156 kqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~  235 (294)
                      ||||+|||||+.+|++|||||||+|||+.++..++++|.++++ .|.|||+||||++++.++||++++|++|+++...+.
T Consensus       409 kqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~~  487 (500)
T TIGR02633       409 QQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQ-EGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVN  487 (500)
T ss_pred             HHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHh-CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEcc
Confidence            9999999999999999999999999999999999999998865 489999999999999999999999999999887654


Q ss_pred             H
Q 022663          236 A  236 (294)
Q Consensus       236 ~  236 (294)
                      +
T Consensus       488 ~  488 (500)
T TIGR02633       488 H  488 (500)
T ss_pred             c
Confidence            4

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=100.00  E-value=4.9e-42  Score=290.82  Aligned_cols=176  Identities=19%  Similarity=0.252  Sum_probs=138.0

Q ss_pred             ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663           12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG   91 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~   91 (294)
                      ++|+++|++++|       +|+++||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|.+.......    
T Consensus         3 ~~l~~~~l~~~~-------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~----   70 (182)
T cd03215           3 PVLEVRGLSVKG-------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPA-SGEITLDGKPVTRRSPR----   70 (182)
T ss_pred             cEEEEeccEEEe-------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEECCEECCccCHH----
Confidence            479999999987       799999999999999999999999999999999998876 89998888643211000    


Q ss_pred             CcccccccccccccccCcc----cccccccHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHHHcc
Q 022663           92 DLSYLGGSWSKTVGSAGEI----PLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLH  167 (294)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv~lAraL~~  167 (294)
                            ...+..++++++.    .++...+..+.+..               .        ..||||||||++|||||+.
T Consensus        71 ------~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~---------------~--------~~LS~G~~qrl~la~al~~  121 (182)
T cd03215          71 ------DAIRAGIAYVPEDRKREGLVLDLSVAENIAL---------------S--------SLLSGGNQQKVVLARWLAR  121 (182)
T ss_pred             ------HHHhCCeEEecCCcccCcccCCCcHHHHHHH---------------H--------hhcCHHHHHHHHHHHHHcc
Confidence                  0011122222221    12222232221100               0        0199999999999999999


Q ss_pred             CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeE
Q 022663          168 PFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL  229 (294)
Q Consensus       168 ~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i  229 (294)
                      +|++|||||||+|||+.++..+.+.|.++.+ .+.|+|++|||++++.++||++++|++|++
T Consensus       122 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~~~~~~~d~v~~l~~G~i  182 (182)
T cd03215         122 DPRVLILDEPTRGVDVGAKAEIYRLIRELAD-AGKAVLLISSELDELLGLCDRILVMYEGRI  182 (182)
T ss_pred             CCCEEEECCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence            9999999999999999999999999998864 489999999999999999999999999974

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=100.00  E-value=6.1e-42  Score=293.16  Aligned_cols=184  Identities=21%  Similarity=0.351  Sum_probs=143.7

Q ss_pred             cEEEcceEEEcCCC---CCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCc--ccCCCceEEecCCcccccccc
Q 022663           13 SIKVCGMQFSYEGN---DKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKH--MVGGRDVVQVLNRSSFHDTQL   87 (294)
Q Consensus        13 ~l~~~~ls~~y~~~---~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~--~~~~~g~i~~~~~~~~~~~~~   87 (294)
                      .|+++||+++|++.   ..+++|+++||+|++||+++|+||||||||||+++|+|++  .|. .|.+.++|.+....   
T Consensus         3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~-~G~i~~~g~~~~~~---   78 (194)
T cd03213           3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGV-SGEVLINGRPLDKR---   78 (194)
T ss_pred             EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCC-ceEEEECCEeCchH---
Confidence            58999999999641   0146999999999999999999999999999999999998  775 89998888653210   


Q ss_pred             cccCCcccccccccccccccCc-ccccccccHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHHHc
Q 022663           88 VCSGDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLL  166 (294)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv~lAraL~  166 (294)
                                 .+...++++++ ..++...+..+.+.            +...        ..+|||||+||++|||||+
T Consensus        79 -----------~~~~~i~~~~q~~~~~~~~t~~~~i~------------~~~~--------~~~LS~G~~qrv~laral~  127 (194)
T cd03213          79 -----------SFRKIIGYVPQDDILHPTLTVRETLM------------FAAK--------LRGLSGGERKRVSIALELV  127 (194)
T ss_pred             -----------hhhheEEEccCcccCCCCCcHHHHHH------------HHHH--------hccCCHHHHHHHHHHHHHH
Confidence                       01112333332 12222333322210            0000        1189999999999999999


Q ss_pred             cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChh-HHHhhhceEEEeeCCeEEec
Q 022663          167 HPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFD-GLETWATHLAYIQDGELRRA  232 (294)
Q Consensus       167 ~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~-~~~~~~d~v~~l~~G~i~~~  232 (294)
                      .+|++|||||||++||+.+++.+.+.|.++.+ .+.|||++|||++ ++..+||++++|++|+++..
T Consensus       128 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~  193 (194)
T cd03213         128 SNPSLLFLDEPTSGLDSSSALQVMSLLRRLAD-TGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYF  193 (194)
T ss_pred             cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCchHHHHHhcCEEEEEeCCEEEec
Confidence            99999999999999999999999999998764 4899999999996 78889999999999998765

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=8.7e-42  Score=345.22  Aligned_cols=217  Identities=23%  Similarity=0.295  Sum_probs=177.1

Q ss_pred             ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663           12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG   91 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~   91 (294)
                      ..|+++||+|+|+.+.+.++|+++||.|++|+.++|||||||||||++++|.+++.|+ .|.|.++|.+...-.      
T Consensus       349 g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~-~G~V~idG~di~~~~------  421 (1228)
T KOG0055|consen  349 GEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPT-SGEVLIDGEDIRNLN------  421 (1228)
T ss_pred             cceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC-CceEEEcCccchhcc------
Confidence            3699999999998755567999999999999999999999999999999999999997 999999998753211      


Q ss_pred             CcccccccccccccccCcccc-cccccHHHHhhcCCCCcHHHHHHHHHHcCC-------------CcccccccCCHHHHH
Q 022663           92 DLSYLGGSWSKTVGSAGEIPL-QGDFSAEHMIFGVEGSDPVRRERLIELLDI-------------DLQWRMHKVSDGQRR  157 (294)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l-------------~~~~~~~~LSgGqkq  157 (294)
                           ...++..++.+.+.|. +.....+|+.++.+....+...++.+..+.             ....+..+|||||||
T Consensus       422 -----~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQ  496 (1228)
T KOG0055|consen  422 -----LKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQ  496 (1228)
T ss_pred             -----hHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHH
Confidence                 1123446666666444 444445666777766555555555544331             122344569999999


Q ss_pred             HHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHH
Q 022663          158 RVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAE  237 (294)
Q Consensus       158 Rv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~  237 (294)
                      |+||||||+.+|+||||||||++||+++...+.+.|.+..  .|.|.|+|+|++..+.+ +|+|++|++|+|++.|+.+|
T Consensus       497 RIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~--~grTTivVaHRLStIrn-aD~I~v~~~G~IvE~G~h~E  573 (1228)
T KOG0055|consen  497 RIAIARALVRNPKILLLDEATSALDAESERVVQEALDKAS--KGRTTIVVAHRLSTIRN-ADKIAVMEEGKIVEQGTHDE  573 (1228)
T ss_pred             HHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhh--cCCeEEEEeeehhhhhc-cCEEEEEECCEEEEecCHHH
Confidence            9999999999999999999999999999999999998764  48899999999999997 99999999999999999999


Q ss_pred             HHHhhh
Q 022663          238 LDELRN  243 (294)
Q Consensus       238 ~~~~~~  243 (294)
                      +....+
T Consensus       574 Li~~~G  579 (1228)
T KOG0055|consen  574 LIALGG  579 (1228)
T ss_pred             HHhccc
Confidence            987653

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=100.00  E-value=6.5e-42  Score=344.78  Aligned_cols=211  Identities=22%  Similarity=0.288  Sum_probs=167.2

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      .|+++||+|+|++. ++++|+|+||+|++||.++|+||||||||||+|+|+|++.|+ +|.+.++|.+...-.       
T Consensus       477 ~I~~~~vsf~y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~-~G~I~idg~~i~~~~-------  547 (710)
T TIGR03796       477 YVELRNITFGYSPL-EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPW-SGEILFDGIPREEIP-------  547 (710)
T ss_pred             eEEEEEEEEecCCC-CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CcEEEECCEeHHHCC-------
Confidence            69999999999752 357999999999999999999999999999999999999886 899999987643211       


Q ss_pred             cccccccccccccccCcc-cccccccHHHHhhcCCCCcHHHHHHHHHHcCCC---------c----ccccccCCHHHHHH
Q 022663           93 LSYLGGSWSKTVGSAGEI-PLQGDFSAEHMIFGVEGSDPVRRERLIELLDID---------L----QWRMHKVSDGQRRR  158 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~---------~----~~~~~~LSgGqkqR  158 (294)
                          ...+++.++++++. .++.....+++.++....+.++..++++..++.         .    ......||||||||
T Consensus       548 ----~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQR  623 (710)
T TIGR03796       548 ----REVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQR  623 (710)
T ss_pred             ----HHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHH
Confidence                11234455555553 344443344544443334455555555554431         1    23346799999999


Q ss_pred             HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663          159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL  238 (294)
Q Consensus       159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~  238 (294)
                      ++|||||+++|++||||||||+||+.+...+.+.|.+    .++|+|+|||+++.+.. ||+|++|++|++++.|+.+++
T Consensus       624 iaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~----~~~T~IiitHrl~~i~~-~D~Iivl~~G~i~~~G~~~~L  698 (710)
T TIGR03796       624 LEIARALVRNPSILILDEATSALDPETEKIIDDNLRR----RGCTCIIVAHRLSTIRD-CDEIIVLERGKVVQRGTHEEL  698 (710)
T ss_pred             HHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh----cCCEEEEEecCHHHHHh-CCEEEEEeCCEEEEecCHHHH
Confidence            9999999999999999999999999999999999864    37999999999998865 999999999999999999998


Q ss_pred             HHh
Q 022663          239 DEL  241 (294)
Q Consensus       239 ~~~  241 (294)
                      .+.
T Consensus       699 l~~  701 (710)
T TIGR03796       699 WAV  701 (710)
T ss_pred             HHc
Confidence            764

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.2e-41  Score=332.26  Aligned_cols=203  Identities=21%  Similarity=0.305  Sum_probs=162.0

Q ss_pred             ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663           12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG   91 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~   91 (294)
                      ++|+++||+++|++   +.+|+|+||+|++||+++|+||||||||||+|+|+|++.|+ +|.+.+.+..           
T Consensus       318 ~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~-~G~i~~~~~~-----------  382 (530)
T PRK15064        318 NALEVENLTKGFDN---GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPD-SGTVKWSENA-----------  382 (530)
T ss_pred             ceEEEEeeEEeeCC---ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CeEEEECCce-----------
Confidence            48999999999975   46999999999999999999999999999999999998876 7888776531           


Q ss_pred             CcccccccccccccccCcccccccccHHHHhhcC--CCCcHHHHHHHHHHcCCC---cccccccCCHHHHHHHHHHHHHc
Q 022663           92 DLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGV--EGSDPVRRERLIELLDID---LQWRMHKVSDGQRRRVQICMGLL  166 (294)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~l~l~---~~~~~~~LSgGqkqRv~lAraL~  166 (294)
                      .+.++++...        ..+....+..+.+...  .....+.+..+++.+++.   .++++.+|||||||||+|||||+
T Consensus       383 ~i~~~~q~~~--------~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~  454 (530)
T PRK15064        383 NIGYYAQDHA--------YDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMM  454 (530)
T ss_pred             EEEEEccccc--------ccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHh
Confidence            1233322110        0112223333322111  112234567788899883   47889999999999999999999


Q ss_pred             cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEE-ecccHHHHHHh
Q 022663          167 HPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELR-RAEKLAELDEL  241 (294)
Q Consensus       167 ~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~~~  241 (294)
                      .+|++|||||||+|||+.++..+.+.|.++    +.|||+||||++++..+||++++|++|+++ ..|++.++.+.
T Consensus       455 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~  526 (530)
T PRK15064        455 QKPNVLVMDEPTNHMDMESIESLNMALEKY----EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRS  526 (530)
T ss_pred             cCCCEEEEcCCCCCCCHHHHHHHHHHHHHC----CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHH
Confidence            999999999999999999999999998764    459999999999999999999999999997 78888877654

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=1e-41  Score=294.54  Aligned_cols=193  Identities=22%  Similarity=0.303  Sum_probs=151.0

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      +|+++||++.|++   ..+|+++||+|++||+++|+||||||||||+++|+|+..|+ +|.+.++|.+... ..      
T Consensus         2 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~-~~------   70 (207)
T PRK13539          2 MLEGEDLACVRGG---RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPA-AGTIKLDGGDIDD-PD------   70 (207)
T ss_pred             EEEEEeEEEEECC---eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEECCEeCcc-hh------
Confidence            6999999999975   46999999999999999999999999999999999998776 8999888754210 00      


Q ss_pred             cccccccccccccccCc-ccccccccHHHHh-hc--CCCCcHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHHHc
Q 022663           93 LSYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-FG--VEGSDPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMGLL  166 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~--~~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL~  166 (294)
                             .+..++++++ ..++...+..+.+ +.  ........+.++++.+++.  .++++++||||||||++|||||+
T Consensus        71 -------~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~  143 (207)
T PRK13539         71 -------VAEACHYLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLV  143 (207)
T ss_pred             -------hHhhcEEecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHh
Confidence                   1112222221 2223334443322 21  1122234567788888885  47788999999999999999999


Q ss_pred             cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeC
Q 022663          167 HPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQD  226 (294)
Q Consensus       167 ~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~  226 (294)
                      .+|++|||||||+|||+.++..++++|.++.+ .|.|||++||+++++..  |+++.+..
T Consensus       144 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~~~~~--~~~~~~~~  200 (207)
T PRK13539        144 SNRPIWILDEPTAALDAAAVALFAELIRAHLA-QGGIVIAATHIPLGLPG--ARELDLGP  200 (207)
T ss_pred             cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCchhhcc--CcEEeecC
Confidence            99999999999999999999999999998765 48999999999999986  99887744

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=100.00  E-value=2e-41  Score=302.07  Aligned_cols=213  Identities=17%  Similarity=0.144  Sum_probs=157.0

Q ss_pred             ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663           12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG   91 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~   91 (294)
                      ..|+++|++++|++. .+.+|+++||+|++||+++|+|+||||||||+++|+|++.|. +|.+.++|.+.......    
T Consensus        18 ~~i~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~-~G~i~i~g~~i~~~~~~----   91 (257)
T cd03288          18 GEIKIHDLCVRYENN-LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIF-DGKIVIDGIDISKLPLH----   91 (257)
T ss_pred             ceEEEEEEEEEeCCC-CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCC-CCeEEECCEEhhhCCHH----
Confidence            469999999999642 246999999999999999999999999999999999998776 89999888653211100    


Q ss_pred             CcccccccccccccccCcc-cccccccHHHHhhcCCCCcHHHHHHH---------HHHc--CCC--cccccccCCHHHHH
Q 022663           92 DLSYLGGSWSKTVGSAGEI-PLQGDFSAEHMIFGVEGSDPVRRERL---------IELL--DID--LQWRMHKVSDGQRR  157 (294)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---------l~~l--~l~--~~~~~~~LSgGqkq  157 (294)
                             .++..++++++. .++. .+..+...............+         ++.+  +++  .+..+.+||+||+|
T Consensus        92 -------~~~~~i~~v~q~~~l~~-~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~q  163 (257)
T cd03288          92 -------TLRSRLSIILQDPILFS-GSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQ  163 (257)
T ss_pred             -------HHhhhEEEECCCCcccc-cHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHH
Confidence                   011122222221 1222 122222211101111112222         2222  222  34567899999999


Q ss_pred             HHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHH
Q 022663          158 RVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAE  237 (294)
Q Consensus       158 Rv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~  237 (294)
                      |++|||||+.+|++|||||||+|||+.++..++++|.++.  .+.|||++||+++.+.. ||+|++|++|+++..|++++
T Consensus       164 rl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~--~~~tiii~sh~~~~~~~-~dri~~l~~G~i~~~g~~~~  240 (257)
T cd03288         164 LFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF--ADRTVVTIAHRVSTILD-ADLVLVLSRGILVECDTPEN  240 (257)
T ss_pred             HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc--CCCEEEEEecChHHHHh-CCEEEEEECCEEEEeCCHHH
Confidence            9999999999999999999999999999999999998863  37999999999999986 99999999999999999888


Q ss_pred             HHHh
Q 022663          238 LDEL  241 (294)
Q Consensus       238 ~~~~  241 (294)
                      +.+.
T Consensus       241 ~~~~  244 (257)
T cd03288         241 LLAQ  244 (257)
T ss_pred             HHhc
Confidence            7553

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=100.00  E-value=2e-41  Score=302.85  Aligned_cols=204  Identities=22%  Similarity=0.283  Sum_probs=158.2

Q ss_pred             cEEEcceEEEcCCC-----------------CCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEE
Q 022663           13 SIKVCGMQFSYEGN-----------------DKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQ   75 (294)
Q Consensus        13 ~l~~~~ls~~y~~~-----------------~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~   75 (294)
                      .++++||++.|...                 ..+++|+++||+|++||+++|+||||||||||+++|+|+++|+ .|.+.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~-~G~I~   82 (264)
T PRK13546          4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPT-VGKVD   82 (264)
T ss_pred             eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC-ceEEE
Confidence            58899999988531                 1235899999999999999999999999999999999998876 88888


Q ss_pred             ecCCcccccccccccCCcccccccccccccccCcccccccccHHH-Hhhc--CCCCcH----HHHHHHHHHcCCC--ccc
Q 022663           76 VLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEH-MIFG--VEGSDP----VRRERLIELLDID--LQW  146 (294)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~----~~~~~~l~~l~l~--~~~  146 (294)
                      ++|....             ..+.          ..+.+.++..+ +.+.  ......    .....+++.+++.  .++
T Consensus        83 ~~g~~~~-------------~~~~----------~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~  139 (264)
T PRK13546         83 RNGEVSV-------------IAIS----------AGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQ  139 (264)
T ss_pred             ECCEEeE-------------Eecc----------cCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcC
Confidence            7764211             0000          00111122222 1111  111111    1234566666664  477


Q ss_pred             ccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeC
Q 022663          147 RMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQD  226 (294)
Q Consensus       147 ~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~  226 (294)
                      ++.+|||||+|||+|||||+.+|++|||||||+|||+.++..++++|.++. +.|.|||++||+++++..+||+|++|++
T Consensus       140 ~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~-~~g~tiIiisH~~~~i~~~~d~i~~l~~  218 (264)
T PRK13546        140 PVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFK-EQNKTIFFVSHNLGQVRQFCTKIAWIEG  218 (264)
T ss_pred             CcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHH-HCCCEEEEEcCCHHHHHHHcCEEEEEEC
Confidence            889999999999999999999999999999999999999999999999885 4589999999999999999999999999


Q ss_pred             CeEEecccHHHHHHh
Q 022663          227 GELRRAEKLAELDEL  241 (294)
Q Consensus       227 G~i~~~g~~~~~~~~  241 (294)
                      |+++..|+.+++...
T Consensus       219 G~i~~~g~~~~~~~~  233 (264)
T PRK13546        219 GKLKDYGELDDVLPK  233 (264)
T ss_pred             CEEEEeCCHHHHHHH
Confidence            999999998887653

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.1e-41  Score=332.63  Aligned_cols=199  Identities=26%  Similarity=0.333  Sum_probs=154.9

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      ||+++|++++|++   +++|+|+||+|.+||+++|+||||||||||||+|+|+++|+ .|.+.+.+..           .
T Consensus         1 ml~i~~ls~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~-~G~i~~~~~~-----------~   65 (530)
T PRK15064          1 MLSTANITMQFGA---KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPS-AGNVSLDPNE-----------R   65 (530)
T ss_pred             CEEEEEEEEEeCC---cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEecCCC-----------E
Confidence            4899999999975   57999999999999999999999999999999999998876 7888776531           1


Q ss_pred             cccccccccccccccCcccccccccHHHH--------------------------------------hhcCCCC-cHHHH
Q 022663           93 LSYLGGSWSKTVGSAGEIPLQGDFSAEHM--------------------------------------IFGVEGS-DPVRR  133 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~~~-~~~~~  133 (294)
                      +.+.++..          .++..++..+.                                      ....... ...++
T Consensus        66 i~~~~q~~----------~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (530)
T PRK15064         66 LGKLRQDQ----------FAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARA  135 (530)
T ss_pred             EEEEeccC----------CcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHH
Confidence            11111110          00000010000                                      0000011 12345


Q ss_pred             HHHHHHcCCC--c-ccccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q 022663          134 ERLIELLDID--L-QWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHI  210 (294)
Q Consensus       134 ~~~l~~l~l~--~-~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd  210 (294)
                      .++++.+++.  . ++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|.+    .|.|||+||||
T Consensus       136 ~~~l~~~gl~~~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~~~tiiivsHd  211 (530)
T PRK15064        136 GELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE----RNSTMIIISHD  211 (530)
T ss_pred             HHHHHhCCCChhHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh----CCCeEEEEeCC
Confidence            6788888885  2 467899999999999999999999999999999999999999999998853    48999999999


Q ss_pred             hhHHHhhhceEEEeeCCeE-EecccHHHHHH
Q 022663          211 FDGLETWATHLAYIQDGEL-RRAEKLAELDE  240 (294)
Q Consensus       211 ~~~~~~~~d~v~~l~~G~i-~~~g~~~~~~~  240 (294)
                      ++++..+||+|++|++|++ ++.|+++++.+
T Consensus       212 ~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~  242 (530)
T PRK15064        212 RHFLNSVCTHMADLDYGELRVYPGNYDEYMT  242 (530)
T ss_pred             HHHHHhhcceEEEEeCCEEEEecCCHHHHHH
Confidence            9999999999999999999 47888887754

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=100.00  E-value=9.9e-42  Score=321.69  Aligned_cols=212  Identities=26%  Similarity=0.372  Sum_probs=171.7

Q ss_pred             cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccc-ccccc
Q 022663           11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHD-TQLVC   89 (294)
Q Consensus        11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~-~~~~~   89 (294)
                      .+.++++|++|+|++   .++|++|||+|.+||++||+|.||||||||+|+|+|.+.|+ +|.|.++|+..... .....
T Consensus         6 ~~ll~~~~i~K~Fgg---V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~-~G~I~~~G~~~~~~sp~~A~   81 (500)
T COG1129           6 PPLLELRGISKSFGG---VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD-SGEILIDGKPVAFSSPRDAL   81 (500)
T ss_pred             cceeeeecceEEcCC---ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCC-CceEEECCEEccCCCHHHHH
Confidence            458999999999987   67999999999999999999999999999999999999987 99999998754211 10000


Q ss_pred             cCCcccccccccccccccC-cccccccccHHHHhh-cCCC------CcH----HHHHHHHHHcCCC--cccccccCCHHH
Q 022663           90 SGDLSYLGGSWSKTVGSAG-EIPLQGDFSAEHMIF-GVEG------SDP----VRRERLIELLDID--LQWRMHKVSDGQ  155 (294)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~------~~~----~~~~~~l~~l~l~--~~~~~~~LSgGq  155 (294)
                                 ...+..+. +..+.++++..+++| +...      .++    .+..++++.+++.  ++.++.+||.||
T Consensus        82 -----------~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~Lsiaq  150 (500)
T COG1129          82 -----------AAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQ  150 (500)
T ss_pred             -----------hCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHH
Confidence                       11122222 245667777655543 3221      122    2345677777764  788899999999


Q ss_pred             HHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccH
Q 022663          156 RRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKL  235 (294)
Q Consensus       156 kqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~  235 (294)
                      ||.|+|||||..++++||||||||+|+....+.++++++++. ++|.+||+|||.++++.++||||.+|.||+.+...+.
T Consensus       151 rQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk-~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~  229 (500)
T COG1129         151 RQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLK-AQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPT  229 (500)
T ss_pred             HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH-hCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeeccc
Confidence            999999999999999999999999999999999999999986 4699999999999999999999999999999988773


Q ss_pred             -HHH
Q 022663          236 -AEL  238 (294)
Q Consensus       236 -~~~  238 (294)
                       .++
T Consensus       230 ~~~~  233 (500)
T COG1129         230 AAET  233 (500)
T ss_pred             ccCC
Confidence             443

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=100.00  E-value=1e-41  Score=336.35  Aligned_cols=213  Identities=23%  Similarity=0.287  Sum_probs=167.7

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      .|+++||+++|++. ++++|+|+||+|++||.++|+||||||||||+++|+|++.|+ +|.+.++|.+.....       
T Consensus       341 ~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~-~G~I~i~g~~i~~~~-------  411 (582)
T PRK11176        341 DIEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDID-EGEILLDGHDLRDYT-------  411 (582)
T ss_pred             eEEEEEEEEecCCC-CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCC-CceEEECCEEhhhcC-------
Confidence            59999999999652 357999999999999999999999999999999999999886 899999887542211       


Q ss_pred             cccccccccccccccCcc-cccccccHHHHhhcCCC-CcHHHHHHHHHHcCCC---------cc----cccccCCHHHHH
Q 022663           93 LSYLGGSWSKTVGSAGEI-PLQGDFSAEHMIFGVEG-SDPVRRERLIELLDID---------LQ----WRMHKVSDGQRR  157 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~l~l~---------~~----~~~~~LSgGqkq  157 (294)
                          ...++..++++++. .+++....+++.++... .+.++..++++..++.         .+    ....+|||||||
T Consensus       412 ----~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQ  487 (582)
T PRK11176        412 ----LASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQ  487 (582)
T ss_pred             ----HHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHH
Confidence                01233445555553 34444334555554322 3455556666655431         22    234569999999


Q ss_pred             HHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHH
Q 022663          158 RVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAE  237 (294)
Q Consensus       158 Rv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~  237 (294)
                      |++|||||+++|++|||||||++||+.+...+++.|.++.  .++|+|+|||+++.+. .||+|++|++|++++.|+.++
T Consensus       488 Ri~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~--~~~tvI~VtHr~~~~~-~~D~Ii~l~~g~i~e~g~~~~  564 (582)
T PRK11176        488 RIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ--KNRTSLVIAHRLSTIE-KADEILVVEDGEIVERGTHAE  564 (582)
T ss_pred             HHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh--CCCEEEEEecchHHHH-hCCEEEEEECCEEEEeCCHHH
Confidence            9999999999999999999999999999999999998764  3789999999998765 599999999999999999999


Q ss_pred             HHHh
Q 022663          238 LDEL  241 (294)
Q Consensus       238 ~~~~  241 (294)
                      +.+.
T Consensus       565 l~~~  568 (582)
T PRK11176        565 LLAQ  568 (582)
T ss_pred             HHhC
Confidence            8765

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=100.00  E-value=2.1e-41  Score=291.80  Aligned_cols=187  Identities=22%  Similarity=0.325  Sum_probs=138.9

Q ss_pred             EEEcceEEEcCCCCC--CCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663           14 IKVCGMQFSYEGNDK--PPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG   91 (294)
Q Consensus        14 l~~~~ls~~y~~~~~--~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~   91 (294)
                      |+++||+++|++...  +++|+++||+|++||+++|+||||||||||+++|+|+..|+ +|.+.++|.            
T Consensus         1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~-~G~i~~~g~------------   67 (204)
T cd03250           1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKL-SGSVSVPGS------------   67 (204)
T ss_pred             CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCC-CCeEEEcCE------------
Confidence            578999999975210  36999999999999999999999999999999999998876 888887761            


Q ss_pred             CcccccccccccccccCcccccccccHHHHh-hcCCCCcHHHHHHHHHHcCC-----------C--cccccccCCHHHHH
Q 022663           92 DLSYLGGSWSKTVGSAGEIPLQGDFSAEHMI-FGVEGSDPVRRERLIELLDI-----------D--LQWRMHKVSDGQRR  157 (294)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~l-----------~--~~~~~~~LSgGqkq  157 (294)
                       +.+.++.          ..++ ..+..+++ +... .......++++.+++           .  .++.+.+||+||||
T Consensus        68 -i~~~~q~----------~~l~-~~t~~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~q  134 (204)
T cd03250          68 -IAYVSQE----------PWIQ-NGTIRENILFGKP-FDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQ  134 (204)
T ss_pred             -EEEEecC----------chhc-cCcHHHHhccCCC-cCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHH
Confidence             2222211          1111 12332222 2211 111122222222221           1  34567899999999


Q ss_pred             HHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHH-HHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCe
Q 022663          158 RVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDF-FKDECEQRGATIVYATHIFDGLETWATHLAYIQDGE  228 (294)
Q Consensus       158 Rv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~-l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~  228 (294)
                      |++|||||+.+|++|||||||++||+.+++.+++. +..+.+ .|.|||++||+++.+.. ||++++|++|+
T Consensus       135 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~-~~~tvi~~sh~~~~~~~-~d~i~~l~~G~  204 (204)
T cd03250         135 RISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLL-NNKTRILVTHQLQLLPH-ADQIVVLDNGR  204 (204)
T ss_pred             HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhcc-CCCEEEEEeCCHHHHhh-CCEEEEEeCCC
Confidence            99999999999999999999999999999999984 555544 48999999999999987 99999999985

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=100.00  E-value=1.5e-41  Score=334.45  Aligned_cols=215  Identities=20%  Similarity=0.370  Sum_probs=171.0

Q ss_pred             ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663           12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG   91 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~   91 (294)
                      ..|+++||+|+|++. ++++|+|+||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|.+.....      
T Consensus       337 ~~i~~~~v~f~y~~~-~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~-~G~I~i~g~~i~~~~------  408 (574)
T PRK11160        337 VSLTLNNVSFTYPDQ-PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQ-QGEILLNGQPIADYS------  408 (574)
T ss_pred             CeEEEEEEEEECCCC-CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CceEEECCEEhhhCC------
Confidence            369999999999652 246999999999999999999999999999999999999887 899999887543211      


Q ss_pred             CcccccccccccccccCc-ccccccccHHHHhhcCCCCcHHHHHHHHHHcCCC--cc----------cccccCCHHHHHH
Q 022663           92 DLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMIFGVEGSDPVRRERLIELLDID--LQ----------WRMHKVSDGQRRR  158 (294)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~--~~----------~~~~~LSgGqkqR  158 (294)
                           ...++..++++++ ..++.....+|+.++....+.+...++++.+++.  .+          .....||||||||
T Consensus       409 -----~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqR  483 (574)
T PRK11160        409 -----EAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRR  483 (574)
T ss_pred             -----HHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHH
Confidence                 1123344555554 3344443345554554444555667777777653  11          2456799999999


Q ss_pred             HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663          159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL  238 (294)
Q Consensus       159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~  238 (294)
                      ++|||||+++|++|||||||++||+.+.+.+.+.|.++.  .++|+|+|||+++.+.. ||+|++|++|++++.|+.+++
T Consensus       484 ialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~--~~~tviiitHr~~~~~~-~d~i~~l~~G~i~~~g~~~~l  560 (574)
T PRK11160        484 LGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA--QNKTVLMITHRLTGLEQ-FDRICVMDNGQIIEQGTHQEL  560 (574)
T ss_pred             HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecChhHHHh-CCEEEEEeCCeEEEeCCHHHH
Confidence            999999999999999999999999999999999998874  37899999999998865 999999999999999999998


Q ss_pred             HHhh
Q 022663          239 DELR  242 (294)
Q Consensus       239 ~~~~  242 (294)
                      .+..
T Consensus       561 ~~~~  564 (574)
T PRK11160        561 LAQQ  564 (574)
T ss_pred             HhcC
Confidence            7643

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=100.00  E-value=1.9e-41  Score=332.44  Aligned_cols=202  Identities=26%  Similarity=0.270  Sum_probs=156.6

Q ss_pred             cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663           11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS   90 (294)
Q Consensus        11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~   90 (294)
                      ++||+++||+++|++  ++++|+|+||+|++|++++|+||||||||||||+|+|++.|+ +|.+.+.+..          
T Consensus         4 ~~~l~i~~l~~~y~~--~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~-~G~i~~~~~~----------   70 (556)
T PRK11819          4 QYIYTMNRVSKVVPP--KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEF-EGEARPAPGI----------   70 (556)
T ss_pred             cEEEEEeeEEEEeCC--CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEecCCC----------
Confidence            358999999999972  157999999999999999999999999999999999998886 7888765321          


Q ss_pred             CCcccccccccccccccCcccccccccHHHH-hhc-----------------------------------------CCCC
Q 022663           91 GDLSYLGGSWSKTVGSAGEIPLQGDFSAEHM-IFG-----------------------------------------VEGS  128 (294)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----------------------------------------~~~~  128 (294)
                       .+.++++..          .+++.++..++ .++                                         ...+
T Consensus        71 -~i~~v~Q~~----------~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (556)
T PRK11819         71 -KVGYLPQEP----------QLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAW  139 (556)
T ss_pred             -EEEEEecCC----------CCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcc
Confidence             122222211          01111111111 000                                         0000


Q ss_pred             c-HHHHHHHHHHcCCC-cccccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEE
Q 022663          129 D-PVRRERLIELLDID-LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVY  206 (294)
Q Consensus       129 ~-~~~~~~~l~~l~l~-~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tvii  206 (294)
                      + ..++..+++.+++. .++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|.++    +.|||+
T Consensus       140 ~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~----~~tvii  215 (556)
T PRK11819        140 DLDSQLEIAMDALRCPPWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY----PGTVVA  215 (556)
T ss_pred             chHHHHHHHHHhCCCCcccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC----CCeEEE
Confidence            1 23456677888874 57889999999999999999999999999999999999999999999998864    359999


Q ss_pred             EeCChhHHHhhhceEEEeeCCeEE-ecccHHHHHH
Q 022663          207 ATHIFDGLETWATHLAYIQDGELR-RAEKLAELDE  240 (294)
Q Consensus       207 vsHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~~  240 (294)
                      ||||++++..+||+|++|++|+++ +.|+++++.+
T Consensus       216 isHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~  250 (556)
T PRK11819        216 VTHDRYFLDNVAGWILELDRGRGIPWEGNYSSWLE  250 (556)
T ss_pred             EeCCHHHHHhhcCeEEEEeCCEEEEecCCHHHHHH
Confidence            999999999999999999999986 7888877644

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=100.00  E-value=2e-41  Score=334.94  Aligned_cols=211  Identities=18%  Similarity=0.222  Sum_probs=169.3

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      .|+++|++++|++  ++++|+|+||+|++||+++|+|+||||||||+++|+|++.|+ +|.+.++|.+...-        
T Consensus       340 ~i~~~~v~f~y~~--~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~-~G~I~idg~~i~~~--------  408 (592)
T PRK10790        340 RIDIDNVSFAYRD--DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLT-EGEIRLDGRPLSSL--------  408 (592)
T ss_pred             eEEEEEEEEEeCC--CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC-CceEEECCEEhhhC--------
Confidence            5999999999974  256999999999999999999999999999999999999887 89999988754221        


Q ss_pred             cccccccccccccccCc-ccccccccHHHHhhcCCCCcHHHHHHHHHHcCCC---------cc----cccccCCHHHHHH
Q 022663           93 LSYLGGSWSKTVGSAGE-IPLQGDFSAEHMIFGVEGSDPVRRERLIELLDID---------LQ----WRMHKVSDGQRRR  158 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~---------~~----~~~~~LSgGqkqR  158 (294)
                         ....+++.++++++ ..+++....+|+.++. ..+.++..++++.+++.         .+    .....||||||||
T Consensus       409 ---~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~-~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQR  484 (592)
T PRK10790        409 ---SHSVLRQGVAMVQQDPVVLADTFLANVTLGR-DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQL  484 (592)
T ss_pred             ---CHHHHHhheEEEccCCccccchHHHHHHhCC-CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHH
Confidence               11123445555555 3445544445555543 34455666666666542         12    2345799999999


Q ss_pred             HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663          159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL  238 (294)
Q Consensus       159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~  238 (294)
                      ++|||||+.+|++|||||||++||+.+.+.+.+.|.++.  .++|+|+|||+++.+. .||+|++|++|++++.|+.+++
T Consensus       485 ialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~--~~~tvIivtHr~~~l~-~~D~ii~l~~G~i~~~G~~~~L  561 (592)
T PRK10790        485 LALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVR--EHTTLVVIAHRLSTIV-EADTILVLHRGQAVEQGTHQQL  561 (592)
T ss_pred             HHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHh--CCCEEEEEecchHHHH-hCCEEEEEECCEEEEEcCHHHH
Confidence            999999999999999999999999999999999998864  3689999999998776 5999999999999999999998


Q ss_pred             HHh
Q 022663          239 DEL  241 (294)
Q Consensus       239 ~~~  241 (294)
                      .+.
T Consensus       562 ~~~  564 (592)
T PRK10790        562 LAA  564 (592)
T ss_pred             HhC
Confidence            755

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=2.5e-42  Score=279.74  Aligned_cols=203  Identities=20%  Similarity=0.299  Sum_probs=167.6

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      .++++++.+.-++   .++|+++||++.+||.++|+||||||||||+|+++-++.|+ +|.+.+.|++......      
T Consensus         3 lle~kq~~y~a~~---a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~-~G~l~f~Ge~vs~~~p------   72 (223)
T COG4619           3 LLELKQVGYLAGD---AKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPT-SGTLLFEGEDVSTLKP------   72 (223)
T ss_pred             chHHHHHHhhcCC---CeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCC-CceEEEcCccccccCh------
Confidence            4667776655443   67999999999999999999999999999999999999887 9999999987543222      


Q ss_pred             cccccccccccccccCc-ccccccccHHHHhhcC----CCCcHHHHHHHHHHcCCC---cccccccCCHHHHHHHHHHHH
Q 022663           93 LSYLGGSWSKTVGSAGE-IPLQGDFSAEHMIFGV----EGSDPVRRERLIELLDID---LQWRMHKVSDGQRRRVQICMG  164 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~l~l~---~~~~~~~LSgGqkqRv~lAra  164 (294)
                           ..++..+.|+.+ +.+++.....+++|..    ...+......+++.+++.   +++.+.+|||||+||++|+|-
T Consensus        73 -----ea~Rq~VsY~~Q~paLfg~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~  147 (223)
T COG4619          73 -----EAYRQQVSYCAQTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRN  147 (223)
T ss_pred             -----HHHHHHHHHHHcCccccccchhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHH
Confidence                 223334444443 4466666556665543    224556667888889885   688999999999999999999


Q ss_pred             HccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEE
Q 022663          165 LLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELR  230 (294)
Q Consensus       165 L~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~  230 (294)
                      |..-|+||||||||++||+.+++.+.++|.++.+++..++++||||.+.+.+++|+++-+..|++-
T Consensus       148 Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~~  213 (223)
T COG4619         148 LQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHAG  213 (223)
T ss_pred             hhcCCceEEecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCccc
Confidence            999999999999999999999999999999999888999999999999999999999999998763

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=100.00  E-value=1.6e-41  Score=341.50  Aligned_cols=212  Identities=21%  Similarity=0.282  Sum_probs=165.4

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      .|+++||+|+|++..++++|+|+||+|++||+++|+||||||||||+++|+|++.|. +|.|.++|.+.....       
T Consensus       478 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~-~G~I~idg~~i~~~~-------  549 (711)
T TIGR00958       478 LIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPT-GGQVLLDGVPLVQYD-------  549 (711)
T ss_pred             eEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCC-CCEEEECCEEHHhcC-------
Confidence            599999999997532357999999999999999999999999999999999999887 899999987643211       


Q ss_pred             cccccccccccccccCcc-cccccccHHHHhhcCCCCcHHHHHHHHHHcCCC-------------cccccccCCHHHHHH
Q 022663           93 LSYLGGSWSKTVGSAGEI-PLQGDFSAEHMIFGVEGSDPVRRERLIELLDID-------------LQWRMHKVSDGQRRR  158 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------------~~~~~~~LSgGqkqR  158 (294)
                          ...+++.+++++|. .++.....+|+.++....+.+...++++..++.             ......+||||||||
T Consensus       550 ----~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQR  625 (711)
T TIGR00958       550 ----HHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQR  625 (711)
T ss_pred             ----HHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHH
Confidence                11233445555553 344443445555554444455555666655431             123345799999999


Q ss_pred             HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663          159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL  238 (294)
Q Consensus       159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~  238 (294)
                      ++||||++++|+||||||||++||+++...+.+ ..   ...++|+|+|||+++.+. .||+|++|++|++++.|+.+++
T Consensus       626 lalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~---~~~~~TvIiItHrl~~i~-~aD~IivL~~G~ive~Gt~~eL  700 (711)
T TIGR00958       626 IAIARALVRKPRVLILDEATSALDAECEQLLQE-SR---SRASRTVLLIAHRLSTVE-RADQILVLKKGSVVEMGTHKQL  700 (711)
T ss_pred             HHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh---ccCCCeEEEEeccHHHHH-hCCEEEEEECCEEEEeeCHHHH
Confidence            999999999999999999999999999988888 22   124789999999999876 5999999999999999999998


Q ss_pred             HHh
Q 022663          239 DEL  241 (294)
Q Consensus       239 ~~~  241 (294)
                      .+.
T Consensus       701 ~~~  703 (711)
T TIGR00958       701 MED  703 (711)
T ss_pred             HhC
Confidence            764

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=100.00  E-value=2.5e-41  Score=339.67  Aligned_cols=213  Identities=25%  Similarity=0.316  Sum_probs=168.4

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      .|+++||+|+|++. .+++|+|+||+|++||.++|+||||||||||+|+|+|++.|+ +|.+.++|.+...-.       
T Consensus       463 ~I~~~~vsf~Y~~~-~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~-~G~I~idg~~l~~~~-------  533 (694)
T TIGR03375       463 EIEFRNVSFAYPGQ-ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPT-EGSVLLDGVDIRQID-------  533 (694)
T ss_pred             eEEEEEEEEEeCCC-CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CceEEECCEEhhhCC-------
Confidence            59999999999642 357999999999999999999999999999999999999887 899999987643211       


Q ss_pred             cccccccccccccccCcc-cccccccHHHHhhcCCCCcHHHHHHHHHHcCCC-------------cccccccCCHHHHHH
Q 022663           93 LSYLGGSWSKTVGSAGEI-PLQGDFSAEHMIFGVEGSDPVRRERLIELLDID-------------LQWRMHKVSDGQRRR  158 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------------~~~~~~~LSgGqkqR  158 (294)
                          ...++..++++++. .++.....+++.++....+.++..++++..++.             .......||||||||
T Consensus       534 ----~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQR  609 (694)
T TIGR03375       534 ----PADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQA  609 (694)
T ss_pred             ----HHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHH
Confidence                11234455555553 344443344554443334455555555555431             123446799999999


Q ss_pred             HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663          159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL  238 (294)
Q Consensus       159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~  238 (294)
                      ++|||||+.+|++|||||||++||+.+.+.+.+.|.++.  .++|+|+|||+++.+. .||+|++|++|++++.|+.+++
T Consensus       610 lalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~--~~~T~iiItHrl~~~~-~~D~iivl~~G~i~e~G~~~eL  686 (694)
T TIGR03375       610 VALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL--AGKTLVLVTHRTSLLD-LVDRIIVMDNGRIVADGPKDQV  686 (694)
T ss_pred             HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh--CCCEEEEEecCHHHHH-hCCEEEEEeCCEEEeeCCHHHH
Confidence            999999999999999999999999999999999998864  3799999999999875 6999999999999999999988


Q ss_pred             HHh
Q 022663          239 DEL  241 (294)
Q Consensus       239 ~~~  241 (294)
                      .+.
T Consensus       687 l~~  689 (694)
T TIGR03375       687 LEA  689 (694)
T ss_pred             HHH
Confidence            653

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=1.7e-41  Score=291.67  Aligned_cols=192  Identities=22%  Similarity=0.364  Sum_probs=148.4

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      ||+++|++++|++   +++|+++||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|.+..... .     
T Consensus         1 ml~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~-~G~v~~~g~~~~~~~-~-----   70 (200)
T PRK13540          1 MLDVIELDFDYHD---QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPE-KGEILFERQSIKKDL-C-----   70 (200)
T ss_pred             CEEEEEEEEEeCC---eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CeeEEECCCccccCH-H-----
Confidence            4899999999975   57999999999999999999999999999999999998876 899999886542110 0     


Q ss_pred             cccccccccccccccCc-ccccccccHHH-HhhcCC-CCcHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHHHcc
Q 022663           93 LSYLGGSWSKTVGSAGE-IPLQGDFSAEH-MIFGVE-GSDPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMGLLH  167 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~-~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL~~  167 (294)
                            .++..++++++ ..+++..+..+ +.+... ........++++.+++.  .++++.+|||||+||++||||++.
T Consensus        71 ------~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~  144 (200)
T PRK13540         71 ------TYQKQLCFVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMS  144 (200)
T ss_pred             ------HHHhheEEeccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhc
Confidence                  01122333332 22223344433 322211 11223567788888874  467789999999999999999999


Q ss_pred             CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEE
Q 022663          168 PFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLA  222 (294)
Q Consensus       168 ~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~  222 (294)
                      +|++|||||||+|||+.++..+.++|.++.+ .|.|||++||+.+++.. ||..+
T Consensus       145 ~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~~~~~-~d~~~  197 (200)
T PRK13540        145 KAKLWLLDEPLVALDELSLLTIITKIQEHRA-KGGAVLLTSHQDLPLNK-ADYEE  197 (200)
T ss_pred             CCCEEEEeCCCcccCHHHHHHHHHHHHHHHH-cCCEEEEEeCCchhccc-cchhh
Confidence            9999999999999999999999999998754 58999999999998876 77654

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=100.00  E-value=2.1e-41  Score=295.83  Aligned_cols=204  Identities=23%  Similarity=0.329  Sum_probs=149.9

Q ss_pred             cEEEcceEEEcCCC---C-CCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCC----ccccc
Q 022663           13 SIKVCGMQFSYEGN---D-KPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNR----SSFHD   84 (294)
Q Consensus        13 ~l~~~~ls~~y~~~---~-~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~----~~~~~   84 (294)
                      ||+++||+++|++.   + ...+|+|+||+|++||+++|+||||||||||+++|+|++.|+ .|.+.+++.    +....
T Consensus         1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~-~G~i~~~~~g~~~~~~~~   79 (224)
T TIGR02324         1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPD-SGRILVRHEGAWVDLAQA   79 (224)
T ss_pred             CEEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CCeEEEecCCCccchhhc
Confidence            48999999999631   1 136999999999999999999999999999999999998876 888888632    21100


Q ss_pred             ccccccCCcccccccccccccccCc-ccccccccHHHHh-hcC--CCCc----HHHHHHHHHHcCCC---cccccccCCH
Q 022663           85 TQLVCSGDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-FGV--EGSD----PVRRERLIELLDID---LQWRMHKVSD  153 (294)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~--~~~~----~~~~~~~l~~l~l~---~~~~~~~LSg  153 (294)
                      ...    ..   .......++++++ ..+++.++..+++ +..  ....    .+...++++.+++.   .++++.+|||
T Consensus        80 ~~~----~~---~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~  152 (224)
T TIGR02324        80 SPR----EV---LEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSG  152 (224)
T ss_pred             CHH----HH---HHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCH
Confidence            000    00   0000112233332 2233344443332 111  1111    23446678888874   2568899999


Q ss_pred             HHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEee
Q 022663          154 GQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQ  225 (294)
Q Consensus       154 GqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~  225 (294)
                      |||||++|||||+.+|++|||||||++||+.++..+.++|.++.+ .|.|||++|||++++..+||+++.+.
T Consensus       153 G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vsH~~~~~~~~~d~i~~~~  223 (224)
T TIGR02324       153 GEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKA-RGAALIGIFHDEEVRELVADRVMDVT  223 (224)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcceeEecC
Confidence            999999999999999999999999999999999999999998854 58999999999999999999998763

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=100.00  E-value=1.7e-41  Score=289.98  Aligned_cols=185  Identities=22%  Similarity=0.295  Sum_probs=142.4

Q ss_pred             cEEEcceEEEcCCCC-CCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcc-cCCCceEEecCCccccccccccc
Q 022663           13 SIKVCGMQFSYEGND-KPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHM-VGGRDVVQVLNRSSFHDTQLVCS   90 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~-~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~-~~~~g~i~~~~~~~~~~~~~~~~   90 (294)
                      .|+++|+++.|++.. ++++|+++||+|++||+++|+||||||||||+++|+|+.. +...|.+.++|.+...       
T Consensus         3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~-------   75 (192)
T cd03232           3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDK-------   75 (192)
T ss_pred             EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHH-------
Confidence            689999999996411 1469999999999999999999999999999999999753 2348888888764310       


Q ss_pred             CCcccccccccccccccCc-ccccccccHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHHHccCC
Q 022663           91 GDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPF  169 (294)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv~lAraL~~~p  169 (294)
                              .+...+++.++ ..++...+..+++..         ...   +        .+|||||+||++|||||+.+|
T Consensus        76 --------~~~~~i~~~~q~~~~~~~~tv~~~l~~---------~~~---~--------~~LSgGe~qrv~la~al~~~p  127 (192)
T cd03232          76 --------NFQRSTGYVEQQDVHSPNLTVREALRF---------SAL---L--------RGLSVEQRKRLTIGVELAAKP  127 (192)
T ss_pred             --------HhhhceEEecccCccccCCcHHHHHHH---------HHH---H--------hcCCHHHhHHHHHHHHHhcCC
Confidence                    01112222222 122333333332210         000   0        189999999999999999999


Q ss_pred             CEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChh-HHHhhhceEEEeeC-CeEEecc
Q 022663          170 KVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFD-GLETWATHLAYIQD-GELRRAE  233 (294)
Q Consensus       170 ~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~-~~~~~~d~v~~l~~-G~i~~~g  233 (294)
                      ++|||||||++||+.++..+++.|.++.+ .|.|||++||+++ .+..+||++++|++ |++++.|
T Consensus       128 ~vlllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g  192 (192)
T cd03232         128 SILFLDEPTSGLDSQAAYNIVRFLKKLAD-SGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG  192 (192)
T ss_pred             cEEEEeCCCcCCCHHHHHHHHHHHHHHHH-cCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence            99999999999999999999999998764 4899999999998 47889999999999 9998754

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=100.00  E-value=4.7e-41  Score=331.95  Aligned_cols=212  Identities=20%  Similarity=0.266  Sum_probs=165.6

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      .|+++||+|+|++  ++++|+|+||++++||+++|+|+||||||||+|+|+|++.|. +|.+.++|.+...-.       
T Consensus       334 ~I~~~~vsf~y~~--~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~-~G~I~i~g~~i~~~~-------  403 (588)
T PRK13657        334 AVEFDDVSFSYDN--SRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQ-SGRILIDGTDIRTVT-------  403 (588)
T ss_pred             eEEEEEEEEEeCC--CCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCC-CCEEEECCEEhhhCC-------
Confidence            5999999999974  246999999999999999999999999999999999999886 899999887543211       


Q ss_pred             cccccccccccccccCc-ccccccccHHHHhhcCCCCcHHHHHHHHHHcCCC---------cc----cccccCCHHHHHH
Q 022663           93 LSYLGGSWSKTVGSAGE-IPLQGDFSAEHMIFGVEGSDPVRRERLIELLDID---------LQ----WRMHKVSDGQRRR  158 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~---------~~----~~~~~LSgGqkqR  158 (294)
                          ...++..++++++ ..++.....+++.++....+.++...+++.+++.         .+    .....||||||||
T Consensus       404 ----~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QR  479 (588)
T PRK13657        404 ----RASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQR  479 (588)
T ss_pred             ----HHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHH
Confidence                1123344555555 3344443345555543333444444555544421         12    3345699999999


Q ss_pred             HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663          159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL  238 (294)
Q Consensus       159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~  238 (294)
                      ++|||||+++|++|||||||++||+.+...+++.|.++.  .++|+|+|||+++.+. .||+|++|++|++++.|+.+++
T Consensus       480 ialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~--~~~tvIiitHr~~~~~-~~D~ii~l~~G~i~~~g~~~~l  556 (588)
T PRK13657        480 LAIARALLKDPPILILDEATSALDVETEAKVKAALDELM--KGRTTFIIAHRLSTVR-NADRILVFDNGRVVESGSFDEL  556 (588)
T ss_pred             HHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--cCCEEEEEEecHHHHH-hCCEEEEEECCEEEEeCCHHHH
Confidence            999999999999999999999999999999999998763  3799999999998775 6999999999999999999988


Q ss_pred             HHh
Q 022663          239 DEL  241 (294)
Q Consensus       239 ~~~  241 (294)
                      .+.
T Consensus       557 ~~~  559 (588)
T PRK13657        557 VAR  559 (588)
T ss_pred             HHC
Confidence            654

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=100.00  E-value=1.6e-41  Score=284.82  Aligned_cols=170  Identities=29%  Similarity=0.417  Sum_probs=132.7

Q ss_pred             EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCc
Q 022663           14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL   93 (294)
Q Consensus        14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~   93 (294)
                      |+++|++++|++. ...+|+++||+|++|++++|+||||||||||+++|+|++.|. +|.+.++|........       
T Consensus         1 l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~-~G~i~~~g~~~~~~~~-------   71 (171)
T cd03228           1 IEFKNVSFSYPGR-PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPT-SGEILIDGVDLRDLDL-------   71 (171)
T ss_pred             CEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC-CCEEEECCEEhhhcCH-------
Confidence            4789999999752 136999999999999999999999999999999999998876 8888888764321000       


Q ss_pred             ccccccccccccccCccc-ccccccHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHHHccCCCEE
Q 022663           94 SYLGGSWSKTVGSAGEIP-LQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVL  172 (294)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv~lAraL~~~p~iL  172 (294)
                          ..++..+++.++.+ ++. .+.                  .+.+          ||+||+|||+|||||+.+|++|
T Consensus        72 ----~~~~~~i~~~~~~~~~~~-~t~------------------~e~l----------LS~G~~~rl~la~al~~~p~ll  118 (171)
T cd03228          72 ----ESLRKNIAYVPQDPFLFS-GTI------------------RENI----------LSGGQRQRIAIARALLRDPPIL  118 (171)
T ss_pred             ----HHHHhhEEEEcCCchhcc-chH------------------HHHh----------hCHHHHHHHHHHHHHhcCCCEE
Confidence                00111122222211 110 011                  0111          9999999999999999999999


Q ss_pred             EeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCe
Q 022663          173 LLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGE  228 (294)
Q Consensus       173 lLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~  228 (294)
                      ||||||+|||+.++..+.++|.++. + +.|||++|||++++.. ||++++|++|+
T Consensus       119 llDEP~~gLD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~~~~~-~d~~~~l~~g~  171 (171)
T cd03228         119 ILDEATSALDPETEALILEALRALA-K-GKTVIVIAHRLSTIRD-ADRIIVLDDGR  171 (171)
T ss_pred             EEECCCcCCCHHHHHHHHHHHHHhc-C-CCEEEEEecCHHHHHh-CCEEEEEcCCC
Confidence            9999999999999999999999874 3 6899999999999987 99999999884

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=100.00  E-value=1.9e-41  Score=328.11  Aligned_cols=210  Identities=23%  Similarity=0.359  Sum_probs=158.2

Q ss_pred             cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663           11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS   90 (294)
Q Consensus        11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~   90 (294)
                      .++|+++|++++|++   +.+|+|+||+|++||+++|+||||||||||+|+|+|+.++..+|.+.++|.+........  
T Consensus       258 ~~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~--  332 (490)
T PRK10938        258 EPRIVLNNGVVSYND---RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIW--  332 (490)
T ss_pred             CceEEEeceEEEECC---eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHH--
Confidence            458999999999975   469999999999999999999999999999999999765424789988886431100000  


Q ss_pred             CCcccccccccccccccCcc-cc-c-ccccHHHHhh-cC------C-CCc---HHHHHHHHHHcCCC---cccccccCCH
Q 022663           91 GDLSYLGGSWSKTVGSAGEI-PL-Q-GDFSAEHMIF-GV------E-GSD---PVRRERLIELLDID---LQWRMHKVSD  153 (294)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~-~~-~-~~~~~~~~~~-~~------~-~~~---~~~~~~~l~~l~l~---~~~~~~~LSg  153 (294)
                              ..+..++++++. .+ . ...+..++.. ..      . ...   .+++.++++.+++.   .++++.+|||
T Consensus       333 --------~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg  404 (490)
T PRK10938        333 --------DIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSW  404 (490)
T ss_pred             --------HHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCH
Confidence                    011122332221 11 1 1123333321 10      0 111   23456788888885   3678899999


Q ss_pred             HHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHh-hhceEEEeeCCeEEec
Q 022663          154 GQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLET-WATHLAYIQDGELRRA  232 (294)
Q Consensus       154 GqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~-~~d~v~~l~~G~i~~~  232 (294)
                      ||||||+|||||+.+|++|||||||+|||+.++..+.++|.+++++.+.|||+||||++++.. +||++++|++|+++..
T Consensus       405 Gq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~  484 (490)
T PRK10938        405 GQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRY  484 (490)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEe
Confidence            999999999999999999999999999999999999999999876534579999999999987 5999999999998765


Q ss_pred             c
Q 022663          233 E  233 (294)
Q Consensus       233 g  233 (294)
                      .
T Consensus       485 ~  485 (490)
T PRK10938        485 V  485 (490)
T ss_pred             e
Confidence            3

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=2.3e-41  Score=272.74  Aligned_cols=217  Identities=23%  Similarity=0.337  Sum_probs=172.3

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      .|+++++++.|+.   ..+|-||+|+.++||.+.++||||+|||||+|.+.=+..|. +|...+.+........   ..+
T Consensus         2 sirv~~in~~yg~---~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~-sg~l~ia~~~fd~s~~---~~~   74 (242)
T COG4161           2 SIQLNGINCFYGA---HQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPR-SGTLNIAGNHFDFSKT---PSD   74 (242)
T ss_pred             ceEEccccccccc---chheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCC-CCeEEecccccccccC---ccH
Confidence            5899999999986   57899999999999999999999999999999998777776 7887776543211000   001


Q ss_pred             cccccccccccccccCc-ccccccccHHHHhhcC----CCC-c---HHHHHHHHHHcCCC--cccccccCCHHHHHHHHH
Q 022663           93 LSYLGGSWSKTVGSAGE-IPLQGDFSAEHMIFGV----EGS-D---PVRRERLIELLDID--LQWRMHKVSDGQRRRVQI  161 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~-~---~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~l  161 (294)
                        .....++..++++++ +.+.+.+++.+++...    .+. +   ..+..++++.+.+.  .|+.|-.|||||+|||+|
T Consensus        75 --k~i~~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvai  152 (242)
T COG4161          75 --KAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAI  152 (242)
T ss_pred             --HHHHHHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHH
Confidence              111234556776654 5667777765443211    111 1   22345677777775  689999999999999999


Q ss_pred             HHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHH
Q 022663          162 CMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELD  239 (294)
Q Consensus       162 AraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  239 (294)
                      ||||+.+|++|++||||++|||+-..++.++|+++. +.|.|-++|||..+.+.+.+.+|+.|++|+|++.|+.+-+.
T Consensus       153 aralmmkpqvllfdeptaaldpeitaqvv~iikel~-~tgitqvivthev~va~k~as~vvyme~g~ive~g~a~~ft  229 (242)
T COG4161         153 ARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELA-ETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFT  229 (242)
T ss_pred             HHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHH-hcCceEEEEEeehhHHHhhhhheEeeecCeeEeecchhhcc
Confidence            999999999999999999999999999999999986 46999999999999999999999999999999999987653

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=100.00  E-value=5.2e-41  Score=330.33  Aligned_cols=212  Identities=26%  Similarity=0.357  Sum_probs=170.7

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      .|+++||+|+|++  ++++|+|+||++++||.+||+||||||||||+++|+|++.|. .|.|.++|.+...-.       
T Consensus       328 ~I~f~~vsf~y~~--~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~-~G~I~idg~dI~~i~-------  397 (567)
T COG1132         328 SIEFENVSFSYPG--KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPT-SGEILIDGIDIRDIS-------  397 (567)
T ss_pred             eEEEEEEEEEcCC--CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC-CCeEEECCEehhhcC-------
Confidence            4999999999984  268999999999999999999999999999999999999886 899999887643211       


Q ss_pred             cccccccccccccccCc-ccccccccHHHHhhcCCCCcHHHHHHHHHHcCC-----------C--cccccccCCHHHHHH
Q 022663           93 LSYLGGSWSKTVGSAGE-IPLQGDFSAEHMIFGVEGSDPVRRERLIELLDI-----------D--LQWRMHKVSDGQRRR  158 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l-----------~--~~~~~~~LSgGqkqR  158 (294)
                          ...++..+++++| ..++.....+|+.++......+...++++..++           +  .......||||||||
T Consensus       398 ----~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQr  473 (567)
T COG1132         398 ----LDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQR  473 (567)
T ss_pred             ----HHHHHHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHH
Confidence                1224455666655 345554445666666554444555555444322           1  123445799999999


Q ss_pred             HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663          159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL  238 (294)
Q Consensus       159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~  238 (294)
                      ++||||++.+|++||||||||+||+.+...+.+.+.++.  +++|+|+|+|++..+.. ||+|++|++|++++.|+++++
T Consensus       474 laiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~--~~rT~iiIaHRlsti~~-aD~IiVl~~G~i~e~G~h~eL  550 (567)
T COG1132         474 LAIARALLRNPPILILDEATSALDTETEALIQDALKKLL--KGRTTLIIAHRLSTIKN-ADRIIVLDNGRIVERGTHEEL  550 (567)
T ss_pred             HHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh--cCCEEEEEeccHhHHHh-CCEEEEEECCEEEEecCHHHH
Confidence            999999999999999999999999999999999998765  36799999999998887 999999999999999999999


Q ss_pred             HHh
Q 022663          239 DEL  241 (294)
Q Consensus       239 ~~~  241 (294)
                      ...
T Consensus       551 l~~  553 (567)
T COG1132         551 LAK  553 (567)
T ss_pred             HHc
Confidence            875

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=100.00  E-value=4.3e-41  Score=338.67  Aligned_cols=211  Identities=21%  Similarity=0.289  Sum_probs=167.0

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      .|+++||+|+|+.  ++++|+|+||+|++|+.++|+||||||||||+|+|+|++.|+ +|.+.++|.+...-.       
T Consensus       473 ~I~~~~vsf~y~~--~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~-~G~I~idg~~i~~~~-------  542 (708)
T TIGR01193       473 DIVINDVSYSYGY--GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQAR-SGEILLNGFSLKDID-------  542 (708)
T ss_pred             cEEEEEEEEEcCC--CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCC-CcEEEECCEEHHHcC-------
Confidence            5999999999974  357999999999999999999999999999999999999887 899999987643211       


Q ss_pred             cccccccccccccccCcc-cccccccHHHHhhcC-CCCcHHHHHHHHHHcCCC---------c----ccccccCCHHHHH
Q 022663           93 LSYLGGSWSKTVGSAGEI-PLQGDFSAEHMIFGV-EGSDPVRRERLIELLDID---------L----QWRMHKVSDGQRR  157 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~l~l~---------~----~~~~~~LSgGqkq  157 (294)
                          ...++..++++++. .++.....+++.++. ...+.++..++++..++.         .    ......|||||||
T Consensus       543 ----~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQ  618 (708)
T TIGR01193       543 ----RHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQ  618 (708)
T ss_pred             ----HHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHH
Confidence                11234455666553 344443345555542 334445555555554431         1    2344679999999


Q ss_pred             HHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHH
Q 022663          158 RVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAE  237 (294)
Q Consensus       158 Rv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~  237 (294)
                      |++|||||+++|++|||||||++||+.+.+.+.+.|.++   .++|+|+|||+++.+. .||+|++|++|++++.|+.++
T Consensus       619 RialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~---~~~T~IiitHr~~~~~-~~D~i~~l~~G~i~~~G~~~~  694 (708)
T TIGR01193       619 RIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL---QDKTIIFVAHRLSVAK-QSDKIIVLDHGKIIEQGSHDE  694 (708)
T ss_pred             HHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh---cCCEEEEEecchHHHH-cCCEEEEEECCEEEEECCHHH
Confidence            999999999999999999999999999999999999864   3789999999999775 699999999999999999999


Q ss_pred             HHHh
Q 022663          238 LDEL  241 (294)
Q Consensus       238 ~~~~  241 (294)
                      +.+.
T Consensus       695 L~~~  698 (708)
T TIGR01193       695 LLDR  698 (708)
T ss_pred             HHhc
Confidence            8754

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.1e-41  Score=295.83  Aligned_cols=211  Identities=21%  Similarity=0.339  Sum_probs=177.4

Q ss_pred             eEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcccccc
Q 022663           19 MQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGG   98 (294)
Q Consensus        19 ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~   98 (294)
                      +.+++++    ..| +++|+.+.-.+++|-|+||||||||+|+|+|+..|+ .|.|.++|........     .+  +-.
T Consensus         6 ~~~~lG~----~~l-~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPd-eG~I~lngr~L~Ds~k-----~i--~lp   72 (352)
T COG4148           6 FRQRLGN----FAL-DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPD-EGRIELNGRVLVDAEK-----GI--FLP   72 (352)
T ss_pred             hhhhcCc----eEE-EEeccCCCCceEEEecCCCCChhhHHHHHhccCCcc-ccEEEECCEEeecccC-----Cc--ccC
Confidence            4455543    333 799999886899999999999999999999999998 9999998875443211     11  112


Q ss_pred             cccccccccCc-ccccccccHH-HHhhcCCCCcHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHHHccCCCEEEe
Q 022663           99 SWSKTVGSAGE-IPLQGDFSAE-HMIFGVEGSDPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMGLLHPFKVLLL  174 (294)
Q Consensus        99 ~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL~~~p~iLlL  174 (294)
                      ..++.++|+++ ..+|+.+++. |+.|+.........+++.+.|++.  ++++|..|||||||||+|+|||+..|++|||
T Consensus        73 ~~~RriGYVFQDARLFpH~tVrgNL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLm  152 (352)
T COG4148          73 PEKRRIGYVFQDARLFPHYTVRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLM  152 (352)
T ss_pred             hhhheeeeEeeccccccceEEecchhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeee
Confidence            23456777776 5677877754 455666555566788999999996  6999999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHHhh
Q 022663          175 DEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDELR  242 (294)
Q Consensus       175 DEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~  242 (294)
                      |||.++||...+.+++-+|.++.++....|++|||.++++.++||+|++|++|++...|+.+++....
T Consensus       153 DEPLaSLD~~RK~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~~  220 (352)
T COG4148         153 DEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGSP  220 (352)
T ss_pred             cCchhhcccchhhHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcCc
Confidence            99999999999999999999999999999999999999999999999999999999999999987653

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=100.00  E-value=1.2e-40  Score=289.95  Aligned_cols=200  Identities=23%  Similarity=0.288  Sum_probs=144.7

Q ss_pred             EEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcc
Q 022663           15 KVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLS   94 (294)
Q Consensus        15 ~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~   94 (294)
                      .+.|+.++|++  +.++|+|+||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|.+........      
T Consensus         2 ~~~~~~~~~~~--~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~-~G~i~~~g~~~~~~~~~~------   72 (218)
T cd03290           2 QVTNGYFSWGS--GLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTL-EGKVHWSNKNESEPSFEA------   72 (218)
T ss_pred             eeeeeEEecCC--CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC-CCeEEECCcccccccccc------
Confidence            57899999975  257999999999999999999999999999999999998776 899988876432110000      


Q ss_pred             cccccccccccccCcc-cccccccHHHHh-hcCCCCcHHHHHHHHHHcCCC-------------cccccccCCHHHHHHH
Q 022663           95 YLGGSWSKTVGSAGEI-PLQGDFSAEHMI-FGVEGSDPVRRERLIELLDID-------------LQWRMHKVSDGQRRRV  159 (294)
Q Consensus        95 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~l~-------------~~~~~~~LSgGqkqRv  159 (294)
                       .....+..++++++. .++ ..+..+++ +.. ........++++.+++.             .+.++..|||||+|||
T Consensus        73 -~~~~~~~~i~~~~q~~~~~-~~t~~~nl~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv  149 (218)
T cd03290          73 -TRSRNRYSVAYAAQKPWLL-NATVEENITFGS-PFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRI  149 (218)
T ss_pred             -cchhhcceEEEEcCCCccc-cccHHHHHhhcC-cCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHH
Confidence             000011123333332 222 23433333 221 11222334444544431             2356889999999999


Q ss_pred             HHHHHHccCCCEEEeeCCCCCCCHHHHHHHHH--HHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCe
Q 022663          160 QICMGLLHPFKVLLLDEITVDLDVVARMDLLD--FFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGE  228 (294)
Q Consensus       160 ~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~--~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~  228 (294)
                      +|||||+.+|++|||||||++||+.++..+++  ++..+ ++.|.|+|++||+.+++. .||++++|++|.
T Consensus       150 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~-~~~~~tii~~sH~~~~~~-~~d~i~~l~~G~  218 (218)
T cd03290         150 CVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFL-QDDKRTLVLVTHKLQYLP-HADWIIAMKDGS  218 (218)
T ss_pred             HHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHH-hcCCCEEEEEeCChHHHh-hCCEEEEecCCC
Confidence            99999999999999999999999999999998  55544 445899999999999985 699999999874

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=100.00  E-value=4e-41  Score=288.83  Aligned_cols=191  Identities=23%  Similarity=0.267  Sum_probs=145.1

Q ss_pred             EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCc
Q 022663           14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL   93 (294)
Q Consensus        14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~   93 (294)
                      |+++|++++|++   +.+|+++||+|.+||+++|+||||||||||+++|+|++.|+ .|.+.++|.+......       
T Consensus         1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~~~~-------   69 (198)
T TIGR01189         1 LAARNLACSRGE---RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPD-SGEVRWNGTALAEQRD-------   69 (198)
T ss_pred             CEEEEEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-ccEEEECCEEcccchH-------
Confidence            578999999975   57999999999999999999999999999999999998776 8899888864321100       


Q ss_pred             ccccccccccccccCc-ccccccccHHHHh-hc--CCCCcHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHHHcc
Q 022663           94 SYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-FG--VEGSDPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMGLLH  167 (294)
Q Consensus        94 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~--~~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL~~  167 (294)
                           .+...++++++ ..++...+..+.+ +.  ..........++++.+++.  .++++.+|||||||||+||||++.
T Consensus        70 -----~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~  144 (198)
T TIGR01189        70 -----EPHRNILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLS  144 (198)
T ss_pred             -----HhhhheEEeccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhc
Confidence                 01112222222 1222333433322 21  1111233466788888885  578899999999999999999999


Q ss_pred             CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEE
Q 022663          168 PFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAY  223 (294)
Q Consensus       168 ~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~  223 (294)
                      +|++|||||||+|||+.++..+.++|.++.+ .|.|||++||+...+  .|++++.
T Consensus       145 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sH~~~~~--~~~~~~~  197 (198)
T TIGR01189       145 RAPLWILDEPTTALDKAGVALLAGLLRAHLA-RGGIVLLTTHQDLGL--VEARELR  197 (198)
T ss_pred             CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEEEcccccc--cceEEee
Confidence            9999999999999999999999999998764 589999999998644  4677764

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=100.00  E-value=4e-41  Score=359.84  Aligned_cols=216  Identities=21%  Similarity=0.331  Sum_probs=175.2

Q ss_pred             ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663           12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG   91 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~   91 (294)
                      .+|+++||+|+|++. .+.+|+||||+|++||++||+||||||||||+|+|+|++.|+ +|.+.++|.+......     
T Consensus      1936 ~~L~v~nLsK~Y~~~-~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~pt-sG~I~i~G~~i~~~~~----- 2008 (2272)
T TIGR01257      1936 DILRLNELTKVYSGT-SSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVT-SGDATVAGKSILTNIS----- 2008 (2272)
T ss_pred             ceEEEEEEEEEECCC-CceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCC-ccEEEECCEECcchHH-----
Confidence            479999999999741 246999999999999999999999999999999999999887 8999998875421100     


Q ss_pred             CcccccccccccccccCc-ccccccccHHHHh-h--cCCCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHH
Q 022663           92 DLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-F--GVEGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQI  161 (294)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~--~~~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~l  161 (294)
                             ..+..+++.++ ..++..++..+.+ +  ...+..    .+.++++++.+++.  .++++++|||||||||+|
T Consensus      2009 -------~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLsl 2081 (2272)
T TIGR01257      2009 -------DVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLST 2081 (2272)
T ss_pred             -------HHhhhEEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHH
Confidence                   11223444444 2345556665543 1  111211    22345678888885  578899999999999999


Q ss_pred             HHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHHh
Q 022663          162 CMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDEL  241 (294)
Q Consensus       162 AraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  241 (294)
                      |+||+.+|+||||||||+|||+.+++.+++.|.+++++ |+|||++||++++++.+||||++|++|+++..|+++++.+.
T Consensus      2082 A~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~-g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~ 2160 (2272)
T TIGR01257      2082 AIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIRE-GRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSK 2160 (2272)
T ss_pred             HHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHH
Confidence            99999999999999999999999999999999998654 89999999999999999999999999999999999998654


Q ss_pred             h
Q 022663          242 R  242 (294)
Q Consensus       242 ~  242 (294)
                      .
T Consensus      2161 ~ 2161 (2272)
T TIGR01257      2161 F 2161 (2272)
T ss_pred             h
Confidence            3

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4e-41  Score=315.00  Aligned_cols=210  Identities=23%  Similarity=0.322  Sum_probs=175.8

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      .|+++||+++|+.  ++++|+++||+|++||.+||+|+|||||||++|+|.+...  .+|.|.++|.+...-..      
T Consensus       351 ~I~F~dV~f~y~~--k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d--~sG~I~IdG~dik~~~~------  420 (591)
T KOG0057|consen  351 SIEFDDVHFSYGP--KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD--YSGSILIDGQDIKEVSL------  420 (591)
T ss_pred             cEEEEeeEEEeCC--CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc--cCCcEEECCeeHhhhCh------
Confidence            5999999999986  3569999999999999999999999999999999999876  48999999987643211      


Q ss_pred             cccccccccccccccCc-ccccccccHHHHhhcCCCCcHHHHHHHHHHcCCC-------------cccccccCCHHHHHH
Q 022663           93 LSYLGGSWSKTVGSAGE-IPLQGDFSAEHMIFGVEGSDPVRRERLIELLDID-------------LQWRMHKVSDGQRRR  158 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------------~~~~~~~LSgGqkqR  158 (294)
                           ...++.+++++| ..++++....++.++......+.+-++.+.+++.             ...+...||||||||
T Consensus       421 -----~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQr  495 (591)
T KOG0057|consen  421 -----ESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQR  495 (591)
T ss_pred             -----HHhhhheeEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHH
Confidence                 123445666665 4566666666777776666667777777777762             123455799999999


Q ss_pred             HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663          159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL  238 (294)
Q Consensus       159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~  238 (294)
                      |+||||++.+|+|+++|||||+||.++..++++.+.+..  .++|+|+|-|+++.+.. ||+|++|++|++.+.|+.+++
T Consensus       496 vslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~--~~rTvI~IvH~l~ll~~-~DkI~~l~nG~v~e~gth~el  572 (591)
T KOG0057|consen  496 VSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVM--SGRTVIMIVHRLDLLKD-FDKIIVLDNGTVKEYGTHSEL  572 (591)
T ss_pred             HHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhc--CCCeEEEEEecchhHhc-CCEEEEEECCeeEEeccHHHH
Confidence            999999999999999999999999999999999999843  48999999999998875 999999999999999999998


Q ss_pred             HH
Q 022663          239 DE  240 (294)
Q Consensus       239 ~~  240 (294)
                      +.
T Consensus       573 l~  574 (591)
T KOG0057|consen  573 LA  574 (591)
T ss_pred             hh
Confidence            76

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.7e-41  Score=326.10  Aligned_cols=211  Identities=16%  Similarity=0.227  Sum_probs=160.2

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccc-ccccC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQ-LVCSG   91 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~-~~~~~   91 (294)
                      .++++|+++       ..+++|+||+|++||+++|+||||||||||+|+|+|+++|+ +|.+.++|.+...... .....
T Consensus       257 ~l~~~~~~~-------~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~-~G~i~~~g~~~~~~~~~~~~~~  328 (501)
T PRK11288        257 RLRLDGLKG-------PGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRT-AGQVYLDGKPIDIRSPRDAIRA  328 (501)
T ss_pred             EEEEecccc-------CCcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCC-CceEEECCEECCCCCHHHHHhC
Confidence            688899873       14899999999999999999999999999999999998876 8999888764321000 00011


Q ss_pred             CcccccccccccccccCcccccccccHHHH-hhcCC----------CC--cHHHHHHHHHHcCCC---cccccccCCHHH
Q 022663           92 DLSYLGGSWSKTVGSAGEIPLQGDFSAEHM-IFGVE----------GS--DPVRRERLIELLDID---LQWRMHKVSDGQ  155 (294)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----------~~--~~~~~~~~l~~l~l~---~~~~~~~LSgGq  155 (294)
                      .+.++++....       ..++...+..+. .++..          ..  ..+...++++.+++.   .++++.+|||||
T Consensus       329 ~i~~~~q~~~~-------~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq  401 (501)
T PRK11288        329 GIMLCPEDRKA-------EGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGN  401 (501)
T ss_pred             CCEEcCcCHhh-------CCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHH
Confidence            22232221100       012333343332 22110          00  112456788888883   578899999999


Q ss_pred             HHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccH
Q 022663          156 RRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKL  235 (294)
Q Consensus       156 kqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~  235 (294)
                      ||||+|||||+.+|++|||||||+|||+.++.+++++|.++++ +|.|||+||||++++.++||++++|++|+++..|++
T Consensus       402 ~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~~  480 (501)
T PRK11288        402 QQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAA-QGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAR  480 (501)
T ss_pred             HHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHh-CCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEcc
Confidence            9999999999999999999999999999999999999999865 589999999999999999999999999999999887


Q ss_pred             HHHH
Q 022663          236 AELD  239 (294)
Q Consensus       236 ~~~~  239 (294)
                      +++.
T Consensus       481 ~~~~  484 (501)
T PRK11288        481 EQAT  484 (501)
T ss_pred             ccCC
Confidence            6543

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.1e-41  Score=325.76  Aligned_cols=217  Identities=13%  Similarity=0.180  Sum_probs=158.9

Q ss_pred             ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccc-cccc
Q 022663           12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQ-LVCS   90 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~-~~~~   90 (294)
                      ++|+++|++++|     +.+|+++||+|++||+++|+||||||||||+|+|+|+.+|+ +|.+.++|.+...... ....
T Consensus       249 ~~i~~~~l~~~~-----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~i~~~~~~~~~~  322 (491)
T PRK10982        249 VILEVRNLTSLR-----QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKS-AGTITLHGKKINNHNANEAIN  322 (491)
T ss_pred             cEEEEeCccccc-----CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCC-ccEEEECCEECCCCCHHHHHH
Confidence            479999999974     25899999999999999999999999999999999998886 8999988864321100 0001


Q ss_pred             CCcccccccccccccccCcccccccccHHHHhhcCC--C---C--cHHHHHHHHHHcCCC---cccccccCCHHHHHHHH
Q 022663           91 GDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVE--G---S--DPVRRERLIELLDID---LQWRMHKVSDGQRRRVQ  160 (294)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~--~~~~~~~~l~~l~l~---~~~~~~~LSgGqkqRv~  160 (294)
                      ..+.+.++.... .+..............++.+...  .   .  ......++++.+++.   .++++.+|||||||||+
T Consensus       323 ~~i~~~~q~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~  401 (491)
T PRK10982        323 HGFALVTEERRS-TGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVI  401 (491)
T ss_pred             CCCEEcCCchhh-CCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHH
Confidence            112333222100 00000000000111111111100  1   0  122346677888873   47889999999999999


Q ss_pred             HHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHH
Q 022663          161 ICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLA  236 (294)
Q Consensus       161 lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~  236 (294)
                      |||||+.+|+||||||||+|||+.++..++++|.++.+ +|.|||++|||++++..+|||+++|++|+++..++.+
T Consensus       402 la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~-~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~~~  476 (491)
T PRK10982        402 IGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAK-KDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDTK  476 (491)
T ss_pred             HHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHH-CCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEccc
Confidence            99999999999999999999999999999999998865 5899999999999999999999999999999766554

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=100.00  E-value=2.4e-40  Score=329.10  Aligned_cols=221  Identities=23%  Similarity=0.247  Sum_probs=157.6

Q ss_pred             ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccc-cccccc
Q 022663           12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHD-TQLVCS   90 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~-~~~~~~   90 (294)
                      ++|+++||+++|++   +++|+||||+|++|++++|+||||||||||||+|+|++.|+ +|.+.+.+...... ......
T Consensus         2 ~~l~i~~ls~~~~~---~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~-~G~I~~~~~~~~~~l~q~~~~   77 (635)
T PRK11147          2 SLISIHGAWLSFSD---APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLD-DGRIIYEQDLIVARLQQDPPR   77 (635)
T ss_pred             cEEEEeeEEEEeCC---ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC-CeEEEeCCCCEEEEeccCCCC
Confidence            47999999999975   57999999999999999999999999999999999998886 88888765321100 000000


Q ss_pred             CCcccccccccccccccCc----c---c--ccccccHHHHh--------hc-CCCC-cHHHHHHHHHHcCCCcccccccC
Q 022663           91 GDLSYLGGSWSKTVGSAGE----I---P--LQGDFSAEHMI--------FG-VEGS-DPVRRERLIELLDIDLQWRMHKV  151 (294)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~----~---~--~~~~~~~~~~~--------~~-~~~~-~~~~~~~~l~~l~l~~~~~~~~L  151 (294)
                      .......+...........    .   .  .......+++.        +. .... ...++..+++.+++..++++.+|
T Consensus        78 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~L  157 (635)
T PRK11147         78 NVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDPDAALSSL  157 (635)
T ss_pred             CCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCCCCchhhc
Confidence            0000000000000000000    0   0  00000000000        00 0111 13456778888998778889999


Q ss_pred             CHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEE-
Q 022663          152 SDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELR-  230 (294)
Q Consensus       152 SgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~-  230 (294)
                      ||||||||+|||||+.+|+||||||||+|||+.++.++.++|.++    +.|||+||||++++..+||+|++|++|+++ 
T Consensus       158 SgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~----~~tvlivsHd~~~l~~~~d~i~~L~~G~i~~  233 (635)
T PRK11147        158 SGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF----QGSIIFISHDRSFIRNMATRIVDLDRGKLVS  233 (635)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC----CCEEEEEeCCHHHHHHhcCeEEEEECCEEEE
Confidence            999999999999999999999999999999999999999999865    369999999999999999999999999997 


Q ss_pred             ecccHHHHHH
Q 022663          231 RAEKLAELDE  240 (294)
Q Consensus       231 ~~g~~~~~~~  240 (294)
                      +.|+++++..
T Consensus       234 ~~g~~~~~~~  243 (635)
T PRK11147        234 YPGNYDQYLL  243 (635)
T ss_pred             ecCCHHHHHH
Confidence            4688776654

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=9.3e-41  Score=331.73  Aligned_cols=202  Identities=22%  Similarity=0.289  Sum_probs=159.0

Q ss_pred             cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663           11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS   90 (294)
Q Consensus        11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~   90 (294)
                      .++|+++||++.|++   +++|+|+||+|.+|++++|+||||||||||||+|+|++.|+ +|.+.+.+..          
T Consensus       310 ~~~l~~~~l~~~y~~---~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~-~G~i~~~~~~----------  375 (638)
T PRK10636        310 NPLLKMEKVSAGYGD---RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPV-SGEIGLAKGI----------  375 (638)
T ss_pred             CceEEEEeeEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CCeEEECCCE----------
Confidence            347999999999975   57999999999999999999999999999999999998876 7888764310          


Q ss_pred             CCcccccccccccccccCcccccccccHHHHhhcC-CCCcHHHHHHHHHHcCCC---cccccccCCHHHHHHHHHHHHHc
Q 022663           91 GDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGV-EGSDPVRRERLIELLDID---LQWRMHKVSDGQRRRVQICMGLL  166 (294)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~l~l~---~~~~~~~LSgGqkqRv~lAraL~  166 (294)
                       .+.|+++....        .+....+..+..... .......+..+++.+++.   .++++.+|||||||||+||++|+
T Consensus       376 -~igy~~Q~~~~--------~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~  446 (638)
T PRK10636        376 -KLGYFAQHQLE--------FLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVW  446 (638)
T ss_pred             -EEEEecCcchh--------hCCccchHHHHHHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHh
Confidence             12333221100        011111222211111 111234567788888884   47789999999999999999999


Q ss_pred             cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEE-ecccHHHHH
Q 022663          167 HPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELR-RAEKLAELD  239 (294)
Q Consensus       167 ~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~  239 (294)
                      .+|++|||||||+|||+.++..+.++|.++    +.|||+||||++++..+||+|++|++|+++ +.|+++++.
T Consensus       447 ~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~----~gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  516 (638)
T PRK10636        447 QRPNLLLLDEPTNHLDLDMRQALTEALIDF----EGALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQ  516 (638)
T ss_pred             cCCCEEEEcCCCCCCCHHHHHHHHHHHHHc----CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHH
Confidence            999999999999999999999999999875    359999999999999999999999999997 788888764

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.1e-40  Score=331.32  Aligned_cols=209  Identities=22%  Similarity=0.250  Sum_probs=156.2

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      ||+++||+++|++   +++|+||||+|.+|+++||+||||||||||||+|+|++.|+ +|.|.+.+....          
T Consensus         1 ~i~i~nls~~~g~---~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd-~G~I~~~~~~~i----------   66 (638)
T PRK10636          1 MIVFSSLQIRRGV---RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISAD-GGSYTFPGNWQL----------   66 (638)
T ss_pred             CEEEEEEEEEeCC---ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEecCCCEE----------
Confidence            5899999999975   57999999999999999999999999999999999988886 888887664210          


Q ss_pred             ccccccc----ccccccccCc-ccccccccH-----------HHH--hh----cCCCC-cHHHHHHHHHHcCCC---ccc
Q 022663           93 LSYLGGS----WSKTVGSAGE-IPLQGDFSA-----------EHM--IF----GVEGS-DPVRRERLIELLDID---LQW  146 (294)
Q Consensus        93 ~~~~~~~----~~~~~~~~~~-~~~~~~~~~-----------~~~--~~----~~~~~-~~~~~~~~l~~l~l~---~~~  146 (294)
                       .+..+.    ....++++.+ ...+..++.           ..+  ..    ..... ...++..+++.+++.   .++
T Consensus        67 -~~~~q~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~  145 (638)
T PRK10636         67 -AWVNQETPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLER  145 (638)
T ss_pred             -EEEecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcC
Confidence             000000    0000111110 000000000           000  00    00111 124567788999984   478


Q ss_pred             ccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeC
Q 022663          147 RMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQD  226 (294)
Q Consensus       147 ~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~  226 (294)
                      ++.+|||||||||+||+||+.+|++|||||||+|||+.++.++.++|.++    +.|||+||||++++..+||+|++|++
T Consensus       146 ~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~----~~tviivsHd~~~l~~~~d~i~~L~~  221 (638)
T PRK10636        146 PVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY----QGTLILISHDRDFLDPIVDKIIHIEQ  221 (638)
T ss_pred             chhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC----CCeEEEEeCCHHHHHHhcCEEEEEeC
Confidence            89999999999999999999999999999999999999999998888753    57999999999999999999999999


Q ss_pred             CeEE-ecccHHHHHH
Q 022663          227 GELR-RAEKLAELDE  240 (294)
Q Consensus       227 G~i~-~~g~~~~~~~  240 (294)
                      |++. +.|+++.+..
T Consensus       222 G~i~~~~g~~~~~~~  236 (638)
T PRK10636        222 QSLFEYTGNYSSFEV  236 (638)
T ss_pred             CEEEEecCCHHHHHH
Confidence            9996 5787776643

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=100.00  E-value=1.1e-40  Score=278.51  Aligned_cols=164  Identities=24%  Similarity=0.328  Sum_probs=130.8

Q ss_pred             EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCc
Q 022663           14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL   93 (294)
Q Consensus        14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~   93 (294)
                      |+++|++++|++  ++++|+++||+|++||+++|+||||||||||+++|+|++.|+ +|.+.+.+..           .+
T Consensus         1 i~~~~~~~~~~~--~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~~~~-----------~i   66 (166)
T cd03223           1 IELENLSLATPD--GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWG-SGRIGMPEGE-----------DL   66 (166)
T ss_pred             CEEEEEEEEcCC--CCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CceEEECCCc-----------eE
Confidence            468999999964  246999999999999999999999999999999999998876 8888775521           12


Q ss_pred             ccccccccccccccCcccccccccHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHHHccCCCEEE
Q 022663           94 SYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLL  173 (294)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv~lAraL~~~p~iLl  173 (294)
                      .+.++.          ..++ ..+..+++..                .     .+.+||||||||++|||||+.+|++||
T Consensus        67 ~~~~q~----------~~~~-~~tv~~nl~~----------------~-----~~~~LS~G~~~rv~laral~~~p~~ll  114 (166)
T cd03223          67 LFLPQR----------PYLP-LGTLREQLIY----------------P-----WDDVLSGGEQQRLAFARLLLHKPKFVF  114 (166)
T ss_pred             EEECCC----------Cccc-cccHHHHhhc----------------c-----CCCCCCHHHHHHHHHHHHHHcCCCEEE
Confidence            222221          1111 1232222110                0     467999999999999999999999999


Q ss_pred             eeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCe
Q 022663          174 LDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGE  228 (294)
Q Consensus       174 LDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~  228 (294)
                      |||||++||+.++..+.+.|.++    +.|+|++|||++++ .+||++++|+++.
T Consensus       115 lDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsh~~~~~-~~~d~i~~l~~~~  164 (166)
T cd03223         115 LDEATSALDEESEDRLYQLLKEL----GITVISVGHRPSLW-KFHDRVLDLDGEG  164 (166)
T ss_pred             EECCccccCHHHHHHHHHHHHHh----CCEEEEEeCChhHH-hhCCEEEEEcCCC
Confidence            99999999999999999999764    58999999999875 5999999998763

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=100.00  E-value=1.2e-40  Score=301.85  Aligned_cols=224  Identities=19%  Similarity=0.224  Sum_probs=178.2

Q ss_pred             cccEEEcceEEEcCCCC--------CCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccc
Q 022663           11 LNSIKVCGMQFSYEGND--------KPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSF   82 (294)
Q Consensus        11 ~~~l~~~~ls~~y~~~~--------~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~   82 (294)
                      .+.|+.++|...|.-.+        ...++++|||++.+|+.+||+|+||||||||-++|.+++.+  .|.|.+.|.+..
T Consensus       274 ~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s--~G~I~F~G~~i~  351 (534)
T COG4172         274 PVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPS--QGEIRFDGQDID  351 (534)
T ss_pred             CceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCc--CceEEECCcccc
Confidence            35799999999995321        13478999999999999999999999999999999998765  589999888653


Q ss_pred             ccccccccCCcccccccccccccccCc---ccccccccHHHHhh-cC-----CCCc---HHHHHHHHHHcCCC---cccc
Q 022663           83 HDTQLVCSGDLSYLGGSWSKTVGSAGE---IPLQGDFSAEHMIF-GV-----EGSD---PVRRERLIELLDID---LQWR  147 (294)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~-----~~~~---~~~~~~~l~~l~l~---~~~~  147 (294)
                      .....    ..    ...+..+..+++   -.+.+.++..+++- ++     ....   .+++.++++..|++   .+++
T Consensus       352 ~~~~~----~m----rplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RY  423 (534)
T COG4172         352 GLSRK----EM----RPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRY  423 (534)
T ss_pred             ccChh----hh----hhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcC
Confidence            21100    00    011222222332   23455666665542 11     1112   23456778888886   5899


Q ss_pred             cccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCC
Q 022663          148 MHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDG  227 (294)
Q Consensus       148 ~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G  227 (294)
                      |+++|||||||++||||++.+|++++||||||+||...+.+++++|+++.+++|.+-++||||+..+..+||+|+||++|
T Consensus       424 PhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~G  503 (534)
T COG4172         424 PHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDG  503 (534)
T ss_pred             CcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEecccHHHHHHhhhh
Q 022663          228 ELRRAEKLAELDELRNS  244 (294)
Q Consensus       228 ~i~~~g~~~~~~~~~~~  244 (294)
                      +|++.|+.+++++++..
T Consensus       504 kiVE~G~~~~if~~P~~  520 (534)
T COG4172         504 KIVEQGPTEAVFANPQH  520 (534)
T ss_pred             EEeeeCCHHHHhcCCCc
Confidence            99999999999987654

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=100.00  E-value=4.7e-41  Score=326.63  Aligned_cols=212  Identities=20%  Similarity=0.247  Sum_probs=160.6

Q ss_pred             cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccc-cc
Q 022663           11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQL-VC   89 (294)
Q Consensus        11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~-~~   89 (294)
                      .++|+++|+++        .+|+++||+|++||+++|+||||||||||+|+|+|+++|+ +|.+.++|.+....... ..
T Consensus       266 ~~~l~~~~l~~--------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~-~G~i~~~g~~i~~~~~~~~~  336 (510)
T PRK15439        266 APVLTVEDLTG--------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPAR-GGRIMLNGKEINALSTAQRL  336 (510)
T ss_pred             CceEEEeCCCC--------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC-CcEEEECCEECCCCCHHHHH
Confidence            34799999983        1589999999999999999999999999999999998876 89998887643211000 00


Q ss_pred             cCCcccccccccccccccCcccccccccHHHHh-h------cC--CCC-cHHHHHHHHHHcCCC---cccccccCCHHHH
Q 022663           90 SGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMI-F------GV--EGS-DPVRRERLIELLDID---LQWRMHKVSDGQR  156 (294)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~--~~~-~~~~~~~~l~~l~l~---~~~~~~~LSgGqk  156 (294)
                      ...+.|+++....       ..++..++..+.. .      ..  ... ..+.+.++++.+++.   .++++.+||||||
T Consensus       337 ~~~i~~v~q~~~~-------~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~k  409 (510)
T PRK15439        337 ARGLVYLPEDRQS-------SGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQ  409 (510)
T ss_pred             hCCcEECCCChhh-------CCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHH
Confidence            1122333221100       0123333332221 1      00  001 122356788888884   4788999999999


Q ss_pred             HHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHH
Q 022663          157 RRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLA  236 (294)
Q Consensus       157 qRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~  236 (294)
                      |||+|||||+.+|++|||||||+|||+.+++.+.++|.++++ .|.|||+||||++++.++||++++|++|+++..++++
T Consensus       410 qrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~-~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~  488 (510)
T PRK15439        410 QKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAA-QNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGA  488 (510)
T ss_pred             HHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHh-CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccc
Confidence            999999999999999999999999999999999999999875 5899999999999999999999999999999988876


Q ss_pred             HHH
Q 022663          237 ELD  239 (294)
Q Consensus       237 ~~~  239 (294)
                      ++.
T Consensus       489 ~~~  491 (510)
T PRK15439        489 AIN  491 (510)
T ss_pred             cCC
Confidence            654

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=100.00  E-value=1.7e-40  Score=325.52  Aligned_cols=201  Identities=25%  Similarity=0.242  Sum_probs=154.4

Q ss_pred             ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663           12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG   91 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~   91 (294)
                      .+|+++||+++|++  ++++|+|+||+|++|++++|+|||||||||||++|+|++.|+ +|.+.+++..           
T Consensus         3 ~~i~~~nls~~~~~--~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~-~G~i~~~~~~-----------   68 (552)
T TIGR03719         3 YIYTMNRVSKVVPP--KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEF-NGEARPAPGI-----------   68 (552)
T ss_pred             EEEEEeeEEEecCC--CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEecCCC-----------
Confidence            47999999999972  157999999999999999999999999999999999998886 7887765321           


Q ss_pred             CcccccccccccccccCcccccccccHHHH-hhcC-------------------CCC-----------------------
Q 022663           92 DLSYLGGSWSKTVGSAGEIPLQGDFSAEHM-IFGV-------------------EGS-----------------------  128 (294)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-------------------~~~-----------------------  128 (294)
                      .+.++++..          .++..++..++ .++.                   ...                       
T Consensus        69 ~i~~v~Q~~----------~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (552)
T TIGR03719        69 KVGYLPQEP----------QLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWD  138 (552)
T ss_pred             EEEEEeccC----------CCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcch
Confidence            122222211          11111111111 1000                   000                       


Q ss_pred             cHHHHHHHHHHcCCC-cccccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEE
Q 022663          129 DPVRRERLIELLDID-LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYA  207 (294)
Q Consensus       129 ~~~~~~~~l~~l~l~-~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviiv  207 (294)
                      ...++.++++.+++. .++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|.++    +.|||+|
T Consensus       139 ~~~~~~~~l~~~~l~~~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~----~~tvIii  214 (552)
T TIGR03719       139 LDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY----PGTVVAV  214 (552)
T ss_pred             hHHHHHHHHhhCCCCcccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC----CCeEEEE
Confidence            012334566677774 47789999999999999999999999999999999999999999999998764    4599999


Q ss_pred             eCChhHHHhhhceEEEeeCCeEE-ecccHHHHHH
Q 022663          208 THIFDGLETWATHLAYIQDGELR-RAEKLAELDE  240 (294)
Q Consensus       208 sHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~~  240 (294)
                      |||++++..+||++++|++|+++ ..|+++++.+
T Consensus       215 sHd~~~~~~~~d~v~~l~~g~i~~~~g~~~~~~~  248 (552)
T TIGR03719       215 THDRYFLDNVAGWILELDRGRGIPWEGNYSSWLE  248 (552)
T ss_pred             eCCHHHHHhhcCeEEEEECCEEEEecCCHHHHHH
Confidence            99999999999999999999975 7788887654

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=100.00  E-value=2.1e-40  Score=326.82  Aligned_cols=212  Identities=20%  Similarity=0.266  Sum_probs=162.1

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      .|+++||+++|++  .+++|+|+||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|.+......      
T Consensus       334 ~i~~~~v~~~y~~--~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~-~G~i~~~g~~~~~~~~------  404 (585)
T TIGR01192       334 AVEFRHITFEFAN--SSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPT-VGQILIDGIDINTVTR------  404 (585)
T ss_pred             eEEEEEEEEECCC--CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCC-CCEEEECCEEhhhCCH------
Confidence            5999999999975  246899999999999999999999999999999999999886 8999988865321110      


Q ss_pred             cccccccccccccccCcc-cccccccHHHHhhcCCCCcHHHHHHHHHHcC-----------CC--cccccccCCHHHHHH
Q 022663           93 LSYLGGSWSKTVGSAGEI-PLQGDFSAEHMIFGVEGSDPVRRERLIELLD-----------ID--LQWRMHKVSDGQRRR  158 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-----------l~--~~~~~~~LSgGqkqR  158 (294)
                           ..++..++++++. .++.....+++.++......+....+++..+           ++  .......||||||||
T Consensus       405 -----~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qr  479 (585)
T TIGR01192       405 -----ESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQR  479 (585)
T ss_pred             -----HHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHH
Confidence                 1122334444442 2333323344444433223333333333221           11  244567899999999


Q ss_pred             HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663          159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL  238 (294)
Q Consensus       159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~  238 (294)
                      ++|||||+.+|++|||||||++||+.+++.+.+.|.++.  .++|+|+|||+++.+. .||+|++|++|++++.|+.+++
T Consensus       480 l~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~--~~~tvI~isH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l  556 (585)
T TIGR01192       480 LAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR--KNRTTFIIAHRLSTVR-NADLVLFLDQGRLIEKGSFQEL  556 (585)
T ss_pred             HHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh--CCCEEEEEEcChHHHH-cCCEEEEEECCEEEEECCHHHH
Confidence            999999999999999999999999999999999998763  3899999999999886 5999999999999999999988


Q ss_pred             HHh
Q 022663          239 DEL  241 (294)
Q Consensus       239 ~~~  241 (294)
                      .+.
T Consensus       557 ~~~  559 (585)
T TIGR01192       557 IQK  559 (585)
T ss_pred             HHC
Confidence            654

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=100.00  E-value=2.2e-40  Score=318.96  Aligned_cols=211  Identities=29%  Similarity=0.362  Sum_probs=153.7

Q ss_pred             cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663           11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS   90 (294)
Q Consensus        11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~   90 (294)
                      |.+|+++|++++|++   +++|+++||+|.+|+++||||+||||||||||+|+|...|+ .|.|...+..          
T Consensus         1 m~~i~~~~ls~~~g~---~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~-~G~i~~~~~~----------   66 (530)
T COG0488           1 MSMITLENLSLAYGD---RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPD-SGEVTRPKGL----------   66 (530)
T ss_pred             CceEEEeeeEEeeCC---ceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCC-CCeEeecCCc----------
Confidence            358999999999975   68999999999999999999999999999999999998887 7777654421          


Q ss_pred             CCccccccccccccc-----cc--Ccccccc-------------c---ccHHHH--hh-cCCCCc-HHHHHHHHHHcCCC
Q 022663           91 GDLSYLGGSWSKTVG-----SA--GEIPLQG-------------D---FSAEHM--IF-GVEGSD-PVRRERLIELLDID  143 (294)
Q Consensus        91 ~~~~~~~~~~~~~~~-----~~--~~~~~~~-------------~---~~~~~~--~~-~~~~~~-~~~~~~~l~~l~l~  143 (294)
                       .+.+..|.....-.     .+  ....+..             .   ....++  .+ ....+. ..++..++..|++.
T Consensus        67 -~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~  145 (530)
T COG0488          67 -RVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFP  145 (530)
T ss_pred             -eEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCC
Confidence             11122111100000     00  0000000             0   000000  00 001111 23456677777776


Q ss_pred             c-ccccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEE
Q 022663          144 L-QWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLA  222 (294)
Q Consensus       144 ~-~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~  222 (294)
                      . ++++++||||||.||+||+||+.+|++||||||||+||..+..++.++|.++   .| |||+||||.+|+.++|++|+
T Consensus       146 ~~~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~---~g-tviiVSHDR~FLd~V~t~I~  221 (530)
T COG0488         146 DEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY---PG-TVIVVSHDRYFLDNVATHIL  221 (530)
T ss_pred             cccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC---CC-cEEEEeCCHHHHHHHhhheE
Confidence            4 7899999999999999999999999999999999999999999999888753   35 99999999999999999999


Q ss_pred             EeeCCeEE-ecccHHHHHH
Q 022663          223 YIQDGELR-RAEKLAELDE  240 (294)
Q Consensus       223 ~l~~G~i~-~~g~~~~~~~  240 (294)
                      .+++|++. +.|.++.+.+
T Consensus       222 ~ld~g~l~~y~Gny~~~~~  240 (530)
T COG0488         222 ELDRGKLTPYKGNYSSYLE  240 (530)
T ss_pred             EecCCceeEecCCHHHHHH
Confidence            99999874 5677766544

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=100.00  E-value=2.7e-40  Score=323.84  Aligned_cols=213  Identities=23%  Similarity=0.269  Sum_probs=161.1

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      .++++|++++|++. ++++|+|+||+|++|++++|+||||||||||+++|+|++.|. +|.+.++|.+......      
T Consensus       316 ~i~~~~v~~~y~~~-~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~-~G~i~~~g~~i~~~~~------  387 (544)
T TIGR01842       316 HLSVENVTIVPPGG-KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPT-SGSVRLDGADLKQWDR------  387 (544)
T ss_pred             eEEEEEEEEEcCCC-CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEECCEehhhCCH------
Confidence            59999999999642 257999999999999999999999999999999999998886 8999988865321110      


Q ss_pred             cccccccccccccccCcc-cccccccHHHHhhcCCCCcHHHHHHHH---------HHc--CCC--cccccccCCHHHHHH
Q 022663           93 LSYLGGSWSKTVGSAGEI-PLQGDFSAEHMIFGVEGSDPVRRERLI---------ELL--DID--LQWRMHKVSDGQRRR  158 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l---------~~l--~l~--~~~~~~~LSgGqkqR  158 (294)
                           ..++..++++++. .++.....+++.+.....+.+...+++         +.+  +++  .......||||||||
T Consensus       388 -----~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qr  462 (544)
T TIGR01842       388 -----ETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQR  462 (544)
T ss_pred             -----HHHhhheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHH
Confidence                 1123334444442 233332233333232222333333333         333  222  244567899999999


Q ss_pred             HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663          159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL  238 (294)
Q Consensus       159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~  238 (294)
                      ++|||||+++|++|||||||++||+.+++.+.+.|.++.. .++|+|++||+++.+. .||+|++|++|++++.|+.+++
T Consensus       463 l~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~~tvi~ith~~~~~~-~~d~i~~l~~G~i~~~g~~~~l  540 (544)
T TIGR01842       463 IALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKA-RGITVVVITHRPSLLG-CVDKILVLQDGRIARFGERDEV  540 (544)
T ss_pred             HHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhh-CCCEEEEEeCCHHHHH-hCCEEEEEECCEEEeeCCHHHH
Confidence            9999999999999999999999999999999999988743 4789999999999764 7999999999999999998876


Q ss_pred             HH
Q 022663          239 DE  240 (294)
Q Consensus       239 ~~  240 (294)
                      .+
T Consensus       541 ~~  542 (544)
T TIGR01842       541 LA  542 (544)
T ss_pred             hh
Confidence            43

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=100.00  E-value=9.9e-40  Score=294.28  Aligned_cols=197  Identities=22%  Similarity=0.300  Sum_probs=146.3

Q ss_pred             cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663           11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS   90 (294)
Q Consensus        11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~   90 (294)
                      .+.|+++|+++.  +   +++|+++||+|++||+++|+||||||||||+++|+|+++|+ +|.+.++|.           
T Consensus        37 ~~~l~i~nls~~--~---~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~-~G~I~i~g~-----------   99 (282)
T cd03291          37 DNNLFFSNLCLV--G---APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPS-EGKIKHSGR-----------   99 (282)
T ss_pred             CCeEEEEEEEEe--c---ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEECCE-----------
Confidence            457999999985  2   36999999999999999999999999999999999998876 888877652           


Q ss_pred             CCcccccccccccccccCcccccccccHHHHhhcCCCCcHHHHHHHHHHcCC-------------CcccccccCCHHHHH
Q 022663           91 GDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDI-------------DLQWRMHKVSDGQRR  157 (294)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l-------------~~~~~~~~LSgGqkq  157 (294)
                        +.+.++.          ..++.....+++.+.... .......+++.+++             ..++.+.+|||||+|
T Consensus       100 --i~yv~q~----------~~l~~~tv~enl~~~~~~-~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~q  166 (282)
T cd03291         100 --ISFSSQF----------SWIMPGTIKENIIFGVSY-DEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRA  166 (282)
T ss_pred             --EEEEeCc----------ccccccCHHHHhhccccc-CHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHH
Confidence              2222211          011111112222221111 11111222222222             123346799999999


Q ss_pred             HHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHH-HHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHH
Q 022663          158 RVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFF-KDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLA  236 (294)
Q Consensus       158 Rv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l-~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~  236 (294)
                      |++|||||+.+|++|||||||+|||+.++..+++.+ ..+ . .+.|||++|||++++. .||++++|++|+++..|+++
T Consensus       167 rv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~-~-~~~tIiiisH~~~~~~-~~d~i~~l~~G~i~~~g~~~  243 (282)
T cd03291         167 RISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKL-M-ANKTRILVTSKMEHLK-KADKILILHEGSSYFYGTFS  243 (282)
T ss_pred             HHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHh-h-CCCEEEEEeCChHHHH-hCCEEEEEECCEEEEECCHH
Confidence            999999999999999999999999999999998865 444 3 3789999999999985 79999999999999999988


Q ss_pred             HHHH
Q 022663          237 ELDE  240 (294)
Q Consensus       237 ~~~~  240 (294)
                      ++.+
T Consensus       244 ~~~~  247 (282)
T cd03291         244 ELQS  247 (282)
T ss_pred             HHHh
Confidence            8764

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=100.00  E-value=7.9e-41  Score=324.52  Aligned_cols=210  Identities=19%  Similarity=0.267  Sum_probs=160.4

Q ss_pred             ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccc-cccc
Q 022663           12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQ-LVCS   90 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~-~~~~   90 (294)
                      ++|+++|+++        .+|+++||+|.+||+++|+||||||||||+|+|+|++.|+ +|.+.++|.+...... ....
T Consensus       256 ~~l~~~~l~~--------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~-~G~I~~~g~~i~~~~~~~~~~  326 (501)
T PRK10762        256 VRLKVDNLSG--------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRT-SGYVTLDGHEVVTRSPQDGLA  326 (501)
T ss_pred             cEEEEeCccc--------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCC-ceEEEECCEECCCCCHHHHHH
Confidence            4789999884        2699999999999999999999999999999999998886 8999988864321100 0001


Q ss_pred             CCcccccccccccccccCcccccccccHHHHh-hcC----C---C-Cc----HHHHHHHHHHcCCC---cccccccCCHH
Q 022663           91 GDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMI-FGV----E---G-SD----PVRRERLIELLDID---LQWRMHKVSDG  154 (294)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~---~-~~----~~~~~~~l~~l~l~---~~~~~~~LSgG  154 (294)
                      ..+.|+++....       ..++..++..+++ +..    .   . ..    .+...++++.+++.   .++++.+||||
T Consensus       327 ~~i~~v~q~~~~-------~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG  399 (501)
T PRK10762        327 NGIVYISEDRKR-------DGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGG  399 (501)
T ss_pred             CCCEEecCcccc-------CCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHH
Confidence            122332221100       0123334443322 210    0   0 11    22456788888883   57889999999


Q ss_pred             HHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEeccc
Q 022663          155 QRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEK  234 (294)
Q Consensus       155 qkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~  234 (294)
                      |||||+|||||+.+|++|||||||+|||+.++..+.++|.++++ .|.|||++|||++++..+||+|++|++|+++..++
T Consensus       400 ekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~  478 (501)
T PRK10762        400 NQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKA-EGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFT  478 (501)
T ss_pred             HHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHH-CCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEec
Confidence            99999999999999999999999999999999999999999865 48999999999999999999999999999998887


Q ss_pred             HHHH
Q 022663          235 LAEL  238 (294)
Q Consensus       235 ~~~~  238 (294)
                      ++++
T Consensus       479 ~~~~  482 (501)
T PRK10762        479 REQA  482 (501)
T ss_pred             cccC
Confidence            7654

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=100.00  E-value=1.7e-40  Score=326.88  Aligned_cols=213  Identities=24%  Similarity=0.305  Sum_probs=167.0

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      .|+++||+++|++. ++++|+|+||+|++||+++|+|+||||||||+++|+|++.|. +|.+.++|.+...-.       
T Consensus       330 ~i~~~~v~f~y~~~-~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~-~G~I~i~g~~i~~~~-------  400 (571)
T TIGR02203       330 DVEFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPD-SGQILLDGHDLADYT-------  400 (571)
T ss_pred             eEEEEEEEEEcCCC-CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCC-CCeEEECCEeHHhcC-------
Confidence            59999999999643 357999999999999999999999999999999999999887 899999887542111       


Q ss_pred             cccccccccccccccCccc-ccccccHHHHhhcCC-CCcHHHHHHHHHHcCCC---------ccc----ccccCCHHHHH
Q 022663           93 LSYLGGSWSKTVGSAGEIP-LQGDFSAEHMIFGVE-GSDPVRRERLIELLDID---------LQW----RMHKVSDGQRR  157 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~l~~l~l~---------~~~----~~~~LSgGqkq  157 (294)
                          ...++..++++++.+ ++.....+++.++.. ..+.++..++++.+++.         ++.    ....|||||||
T Consensus       401 ----~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQ  476 (571)
T TIGR02203       401 ----LASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQ  476 (571)
T ss_pred             ----HHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHH
Confidence                012233455555533 333333444444432 34555666666665542         222    23469999999


Q ss_pred             HHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHH
Q 022663          158 RVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAE  237 (294)
Q Consensus       158 Rv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~  237 (294)
                      |++||||++.+|++|||||||++||+.+.+.+++.|.++.  .++|+|+|||+...+. .||+|++|++|++++.|+.++
T Consensus       477 RiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~--~~~tiIiitH~~~~~~-~~D~ii~l~~g~i~~~g~~~~  553 (571)
T TIGR02203       477 RLAIARALLKDAPILILDEATSALDNESERLVQAALERLM--QGRTTLVIAHRLSTIE-KADRIVVMDDGRIVERGTHNE  553 (571)
T ss_pred             HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh--CCCEEEEEehhhHHHH-hCCEEEEEeCCEEEeeCCHHH
Confidence            9999999999999999999999999999999999998764  3789999999998764 699999999999999999998


Q ss_pred             HHHh
Q 022663          238 LDEL  241 (294)
Q Consensus       238 ~~~~  241 (294)
                      +.+.
T Consensus       554 l~~~  557 (571)
T TIGR02203       554 LLAR  557 (571)
T ss_pred             HHHc
Confidence            8654

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=100.00  E-value=1.3e-40  Score=308.95  Aligned_cols=208  Identities=23%  Similarity=0.344  Sum_probs=172.8

Q ss_pred             ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663           12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG   91 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~   91 (294)
                      +.+++++++|+|++   ..++++|||+|.+|||.||+|+||||||||+++|.|++.|+ +|.|.++|+.......     
T Consensus         3 ~~l~~~~itK~f~~---~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~-~GeI~v~G~~v~~~sP-----   73 (501)
T COG3845           3 PALEMRGITKRFPG---VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPD-SGEIRVDGKEVRIKSP-----   73 (501)
T ss_pred             ceEEEeccEEEcCC---EEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCC-cceEEECCEEeccCCH-----
Confidence            47999999999986   67999999999999999999999999999999999999998 9999999986422110     


Q ss_pred             CcccccccccccccccCc-ccccccccHH-HHhhcCCC-----Cc----HHHHHHHHHHcCCC--cccccccCCHHHHHH
Q 022663           92 DLSYLGGSWSKTVGSAGE-IPLQGDFSAE-HMIFGVEG-----SD----PVRRERLIELLDID--LQWRMHKVSDGQRRR  158 (294)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~-----~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqR  158 (294)
                           ....+..++++.| +.+.+.+|+. |+..+...     .+    ..++.++.+.+++.  ++.++++||-|||||
T Consensus        74 -----~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQR  148 (501)
T COG3845          74 -----RDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQR  148 (501)
T ss_pred             -----HHHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHH
Confidence                 0112334555555 5677778764 44455432     12    23456777888875  789999999999999


Q ss_pred             HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEeccc
Q 022663          159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEK  234 (294)
Q Consensus       159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~  234 (294)
                      |.|.+||..+|++|||||||+-|-|...+++++.++.+.+ .|+|||+|||-++++.++|||+.+|.+|+++...+
T Consensus       149 VEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~-~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~  223 (501)
T COG3845         149 VEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAA-EGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVD  223 (501)
T ss_pred             HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeec
Confidence            9999999999999999999999999999999999998865 59999999999999999999999999999876544

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=100.00  E-value=2.6e-40  Score=332.28  Aligned_cols=214  Identities=22%  Similarity=0.325  Sum_probs=167.2

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      .|+++||+|+|++. .+++|+|+||+|++||.++|+|+||||||||+|+|+|++.|+ +|.+.++|.+...-.       
T Consensus       455 ~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~-~G~I~idg~~i~~~~-------  525 (694)
T TIGR01846       455 AITFENIRFRYAPD-SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQ-HGQVLVDGVDLAIAD-------  525 (694)
T ss_pred             eEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CceEEECCEehhhCC-------
Confidence            59999999999642 256999999999999999999999999999999999999887 899999987643211       


Q ss_pred             cccccccccccccccCcc-cccccccHHHHhhcCCCCcHHHHHHHHHHcCC-----------C--cccccccCCHHHHHH
Q 022663           93 LSYLGGSWSKTVGSAGEI-PLQGDFSAEHMIFGVEGSDPVRRERLIELLDI-----------D--LQWRMHKVSDGQRRR  158 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l-----------~--~~~~~~~LSgGqkqR  158 (294)
                          ...++..++++++. .++.....+++.++....+.+...++++..++           +  .......||||||||
T Consensus       526 ----~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qr  601 (694)
T TIGR01846       526 ----PAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQR  601 (694)
T ss_pred             ----HHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHH
Confidence                11233445555543 33433334444444333344444455554432           1  233456899999999


Q ss_pred             HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663          159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL  238 (294)
Q Consensus       159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~  238 (294)
                      ++|||||+++|++|||||||++||+.+...+.+.|.++.  .++|+|+|||+++.+.. ||+|++|++|++++.|+.+++
T Consensus       602 i~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~ii~l~~G~i~~~g~~~~l  678 (694)
T TIGR01846       602 IAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC--RGRTVIIIAHRLSTVRA-CDRIIVLEKGQIAESGRHEEL  678 (694)
T ss_pred             HHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh--CCCEEEEEeCChHHHHh-CCEEEEEeCCEEEEeCCHHHH
Confidence            999999999999999999999999999999999998863  47999999999998865 999999999999999999998


Q ss_pred             HHhh
Q 022663          239 DELR  242 (294)
Q Consensus       239 ~~~~  242 (294)
                      .+..
T Consensus       679 ~~~~  682 (694)
T TIGR01846       679 LALQ  682 (694)
T ss_pred             HHcC
Confidence            7643

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=100.00  E-value=2.9e-40  Score=325.64  Aligned_cols=214  Identities=21%  Similarity=0.261  Sum_probs=166.1

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      .|+++||+++|++..++++|+|+||+|++||+++|+||||||||||+|+|+|++.|. .|.+.++|.+.....       
T Consensus       337 ~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~-~G~I~i~g~~i~~~~-------  408 (576)
T TIGR02204       337 EIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQ-SGRILLDGVDLRQLD-------  408 (576)
T ss_pred             eEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCC-CCEEEECCEEHHhcC-------
Confidence            599999999997422257999999999999999999999999999999999999886 899999886542111       


Q ss_pred             cccccccccccccccCccc-ccccccHHHHhhcCCCCcHHHHHHHHHHcCCC---------c----ccccccCCHHHHHH
Q 022663           93 LSYLGGSWSKTVGSAGEIP-LQGDFSAEHMIFGVEGSDPVRRERLIELLDID---------L----QWRMHKVSDGQRRR  158 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~---------~----~~~~~~LSgGqkqR  158 (294)
                          ...+++.++++++.+ ++.....+|+.++....+.++..++++..++.         .    ......||||||||
T Consensus       409 ----~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qr  484 (576)
T TIGR02204       409 ----PAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQR  484 (576)
T ss_pred             ----HHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHH
Confidence                112333455555533 33333344544443333444555555554431         1    23345799999999


Q ss_pred             HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663          159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL  238 (294)
Q Consensus       159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~  238 (294)
                      ++||||++.+|++|||||||++||+.+++.+++.|.++.  .++|+|+|||+++.+. .||+|++|++|++++.|+++++
T Consensus       485 l~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~--~~~t~IiitH~~~~~~-~~d~vi~l~~g~~~~~g~~~~l  561 (576)
T TIGR02204       485 IAIARAILKDAPILLLDEATSALDAESEQLVQQALETLM--KGRTTLIIAHRLATVL-KADRIVVMDQGRIVAQGTHAEL  561 (576)
T ss_pred             HHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh--CCCEEEEEecchHHHH-hCCEEEEEECCEEEeeecHHHH
Confidence            999999999999999999999999999999999998874  3799999999998765 6999999999999999999887


Q ss_pred             HHh
Q 022663          239 DEL  241 (294)
Q Consensus       239 ~~~  241 (294)
                      .+.
T Consensus       562 ~~~  564 (576)
T TIGR02204       562 IAK  564 (576)
T ss_pred             HHc
Confidence            653

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=100.00  E-value=3.5e-40  Score=292.06  Aligned_cols=192  Identities=21%  Similarity=0.244  Sum_probs=144.2

Q ss_pred             EcCCCCCCCceeeeeEEEe-----CCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcccc
Q 022663           22 SYEGNDKPPLFYDFNLGIS-----PGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYL   96 (294)
Q Consensus        22 ~y~~~~~~~iL~~vsl~i~-----~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~   96 (294)
                      +|++.  ...+++++|++.     +||+++|+||||||||||+++|+|++.|+ +|.+.+++..            +.+.
T Consensus         2 ~y~~~--~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~-~G~i~~~g~~------------i~~~   66 (246)
T cd03237           2 TYPTM--KKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPD-EGDIEIELDT------------VSYK   66 (246)
T ss_pred             CCccc--ccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCC-CCeEEECCce------------EEEe
Confidence            46432  346778888876     79999999999999999999999998886 8888776631            2222


Q ss_pred             cccccccccccCcccccccccHHHHhh-cCC--CCcHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHHHccCCCE
Q 022663           97 GGSWSKTVGSAGEIPLQGDFSAEHMIF-GVE--GSDPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMGLLHPFKV  171 (294)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL~~~p~i  171 (294)
                      ++..          ......+..+++. ...  ........++++.+++.  .++++.+|||||||||+|||||+.+|++
T Consensus        67 ~q~~----------~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~l  136 (246)
T cd03237          67 PQYI----------KADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADI  136 (246)
T ss_pred             cccc----------cCCCCCCHHHHHHHHhhhccccHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence            2211          0111223333321 111  11122346678888885  5788999999999999999999999999


Q ss_pred             EEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEE--ecccHHHH
Q 022663          172 LLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELR--RAEKLAEL  238 (294)
Q Consensus       172 LlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~--~~g~~~~~  238 (294)
                      |||||||++||+.++..+.++|.+++++.++|||+||||++++..+||+|++|+++...  ..+++..+
T Consensus       137 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~  205 (246)
T cd03237         137 YLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQSL  205 (246)
T ss_pred             EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCeeEEEeCCchHH
Confidence            99999999999999999999999987766899999999999999999999999765433  33444444

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=100.00  E-value=3.4e-40  Score=324.54  Aligned_cols=213  Identities=22%  Similarity=0.329  Sum_probs=165.0

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      .|+++|++++|+.. ++++|+|+||+|++|++++|+||||||||||+++|+|++.|+ +|.+.++|.+.....       
T Consensus       313 ~I~~~~v~~~y~~~-~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~-~G~i~~~g~~~~~~~-------  383 (569)
T PRK10789        313 ELDVNIRQFTYPQT-DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVS-EGDIRFHDIPLTKLQ-------  383 (569)
T ss_pred             cEEEEEEEEECCCC-CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCC-CCEEEECCEEHhhCC-------
Confidence            59999999999742 256999999999999999999999999999999999999886 899998887542111       


Q ss_pred             cccccccccccccccCc-ccccccccHHHHhhcCCCCcHHHHHHHHHHcCCC-------------cccccccCCHHHHHH
Q 022663           93 LSYLGGSWSKTVGSAGE-IPLQGDFSAEHMIFGVEGSDPVRRERLIELLDID-------------LQWRMHKVSDGQRRR  158 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------------~~~~~~~LSgGqkqR  158 (294)
                          ...++..++++++ ..++.....+++.++......+....+++..++.             .+.....||||||||
T Consensus       384 ----~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qR  459 (569)
T PRK10789        384 ----LDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQR  459 (569)
T ss_pred             ----HHHHHhheEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHH
Confidence                0122333444444 2334333334444443333444444555444321             234456799999999


Q ss_pred             HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663          159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL  238 (294)
Q Consensus       159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~  238 (294)
                      ++|||||+++|++|||||||++||+.+...+.+.|.++.  .++|+|+|||+++.+. .||+|++|++|++++.|+.+++
T Consensus       460 i~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tii~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l  536 (569)
T PRK10789        460 ISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG--EGRTVIISAHRLSALT-EASEILVMQHGHIAQRGNHDQL  536 (569)
T ss_pred             HHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh--CCCEEEEEecchhHHH-cCCEEEEEeCCEEEEecCHHHH
Confidence            999999999999999999999999999999999998864  4899999999998876 5999999999999999999988


Q ss_pred             HHh
Q 022663          239 DEL  241 (294)
Q Consensus       239 ~~~  241 (294)
                      .+.
T Consensus       537 ~~~  539 (569)
T PRK10789        537 AQQ  539 (569)
T ss_pred             HHc
Confidence            754

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=100.00  E-value=3.6e-40  Score=269.18  Aligned_cols=144  Identities=33%  Similarity=0.462  Sum_probs=126.1

Q ss_pred             EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCc
Q 022663           14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL   93 (294)
Q Consensus        14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~   93 (294)
                      |+++|++++|++   .++|+++||++++||+++|+||||||||||+++|+|+++|. +|.+.+++..           .+
T Consensus         1 l~~~~l~~~~~~---~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~-~G~i~~~~~~-----------~i   65 (144)
T cd03221           1 IELENLSKTYGG---KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPD-EGIVTWGSTV-----------KI   65 (144)
T ss_pred             CEEEEEEEEECC---ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC-ceEEEECCeE-----------EE
Confidence            468999999975   46999999999999999999999999999999999998876 7877765420           00


Q ss_pred             ccccccccccccccCcccccccccHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHHHccCCCEEE
Q 022663           94 SYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLL  173 (294)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv~lAraL~~~p~iLl  173 (294)
                      .+           +                                         .+||+||+||++|||||+.+|+++|
T Consensus        66 ~~-----------~-----------------------------------------~~lS~G~~~rv~laral~~~p~ill   93 (144)
T cd03221          66 GY-----------F-----------------------------------------EQLSGGEKMRLALAKLLLENPNLLL   93 (144)
T ss_pred             EE-----------E-----------------------------------------ccCCHHHHHHHHHHHHHhcCCCEEE
Confidence            00           0                                         0199999999999999999999999


Q ss_pred             eeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCe
Q 022663          174 LDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGE  228 (294)
Q Consensus       174 LDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~  228 (294)
                      |||||++||+.++..+.+.|+++    +.|+|++||+++++..+||++++|++|+
T Consensus        94 lDEP~~~LD~~~~~~l~~~l~~~----~~til~~th~~~~~~~~~d~v~~l~~g~  144 (144)
T cd03221          94 LDEPTNHLDLESIEALEEALKEY----PGTVILVSHDRYFLDQVATKIIELEDGK  144 (144)
T ss_pred             EeCCccCCCHHHHHHHHHHHHHc----CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence            99999999999999999999764    4699999999999999999999999985

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=100.00  E-value=4.9e-40  Score=287.23  Aligned_cols=188  Identities=23%  Similarity=0.296  Sum_probs=144.6

Q ss_pred             EEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcccccccccccccccCcccccccc
Q 022663           37 LGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDF  116 (294)
Q Consensus        37 l~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (294)
                      |+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|.+...     ....+.+.++...        .......
T Consensus         1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~-----~~~~i~~v~q~~~--------~~~~~~~   66 (223)
T TIGR03771         1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPA-KGTVKVAGASPGK-----GWRHIGYVPQRHE--------FAWDFPI   66 (223)
T ss_pred             CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEECCccchH-----hhCcEEEeccccc--------ccCCCCc
Confidence            578999999999999999999999999998876 8999998865311     0112333322110        0000112


Q ss_pred             cHHH-HhhcC------C--C--CcHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCH
Q 022663          117 SAEH-MIFGV------E--G--SDPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDV  183 (294)
Q Consensus       117 ~~~~-~~~~~------~--~--~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~  183 (294)
                      +..+ +.+..      .  .  .....+..+++.+++.  .++++.+|||||||||+|||||+.+|++|||||||++||+
T Consensus        67 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~  146 (223)
T TIGR03771        67 SVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDM  146 (223)
T ss_pred             cHHHHHHhccccccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence            3222 22211      0  0  1123456778888885  4778899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHH
Q 022663          184 VARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDE  240 (294)
Q Consensus       184 ~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  240 (294)
                      .++..+.++|.++++ .|.|||++|||++++.++||+++++ +|+++..++.+++.+
T Consensus       147 ~~~~~l~~~l~~~~~-~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~  201 (223)
T TIGR03771       147 PTQELLTELFIELAG-AGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQD  201 (223)
T ss_pred             HHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcC
Confidence            999999999998864 4899999999999999999999999 899999999888754

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=100.00  E-value=1.3e-39  Score=319.55  Aligned_cols=202  Identities=23%  Similarity=0.310  Sum_probs=158.5

Q ss_pred             ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663           12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG   91 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~   91 (294)
                      ++|+++||++.|++   +++|+|+||+|++||+++|+||||||||||+++|+|++.|+ +|.+.+.+. .          
T Consensus       323 ~~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~-~G~i~~~~~-~----------  387 (556)
T PRK11819        323 KVIEAENLSKSFGD---RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPD-SGTIKIGET-V----------  387 (556)
T ss_pred             eEEEEEeEEEEECC---eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CeEEEECCc-e----------
Confidence            48999999999975   57999999999999999999999999999999999998886 788876321 0          


Q ss_pred             CcccccccccccccccCcccccccccHHHHh-hcCC--C--CcHHHHHHHHHHcCCC---cccccccCCHHHHHHHHHHH
Q 022663           92 DLSYLGGSWSKTVGSAGEIPLQGDFSAEHMI-FGVE--G--SDPVRRERLIELLDID---LQWRMHKVSDGQRRRVQICM  163 (294)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~--~~~~~~~~~l~~l~l~---~~~~~~~LSgGqkqRv~lAr  163 (294)
                      .+.|+++..         ..++..++..+.+ +...  .  ........+++.+++.   .++++.+|||||||||+|||
T Consensus       388 ~i~~v~q~~---------~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~  458 (556)
T PRK11819        388 KLAYVDQSR---------DALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAK  458 (556)
T ss_pred             EEEEEeCch---------hhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHH
Confidence            123332211         0122333433322 2211  1  1122345678888884   47889999999999999999


Q ss_pred             HHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeC-CeEE-ecccHHHHHHh
Q 022663          164 GLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQD-GELR-RAEKLAELDEL  241 (294)
Q Consensus       164 aL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~-G~i~-~~g~~~~~~~~  241 (294)
                      ||+.+|++|||||||+|||+.++..++++|.++    +.|||+||||++++..+||+|++|++ |++. ..|+++++.+.
T Consensus       459 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~~  534 (556)
T PRK11819        459 TLKQGGNVLLLDEPTNDLDVETLRALEEALLEF----PGCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEED  534 (556)
T ss_pred             HHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC----CCeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHHH
Confidence            999999999999999999999999999999875    24899999999999999999999996 7776 57888777654

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=100.00  E-value=3.1e-40  Score=352.97  Aligned_cols=214  Identities=22%  Similarity=0.290  Sum_probs=173.7

Q ss_pred             ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663           12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG   91 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~   91 (294)
                      +.|+++||++.|+++ ++.+|+|+||+|.+||+++|+||||||||||+|+|+|++.|+ +|.+.++|.+.....      
T Consensus       927 ~~L~I~nLsK~y~~~-~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~Pt-sG~I~i~G~dI~~~~------  998 (2272)
T TIGR01257       927 PGVCVKNLVKIFEPS-GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPT-SGTVLVGGKDIETNL------  998 (2272)
T ss_pred             ceEEEEeEEEEecCC-CceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCC-ceEEEECCEECcchH------
Confidence            479999999999521 257999999999999999999999999999999999999887 899999887542110      


Q ss_pred             CcccccccccccccccCc-ccccccccHHHHh-hc--CCCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHH
Q 022663           92 DLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-FG--VEGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQI  161 (294)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~--~~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~l  161 (294)
                            ...++.++++++ ..+++.++..+.+ +.  ..+..    .++++++++.+++.  .++++.+|||||||||+|
T Consensus       999 ------~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsL 1072 (2272)
T TIGR01257       999 ------DAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSV 1072 (2272)
T ss_pred             ------HHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHH
Confidence                  011223444443 3345566665543 21  12211    23456788888885  578899999999999999


Q ss_pred             HHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHHh
Q 022663          162 CMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDEL  241 (294)
Q Consensus       162 AraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  241 (294)
                      |+||+.+|++|||||||+|||+.+++.++++|+++.  .|+|||++|||++++..+||||++|++|+++..|++..+.+.
T Consensus      1073 ArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~--~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~ 1150 (2272)
T TIGR01257      1073 AIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR--SGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNC 1150 (2272)
T ss_pred             HHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHHh
Confidence            999999999999999999999999999999999983  489999999999999999999999999999999999887654

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=100.00  E-value=9.2e-40  Score=320.38  Aligned_cols=202  Identities=23%  Similarity=0.298  Sum_probs=156.9

Q ss_pred             cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663           11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS   90 (294)
Q Consensus        11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~   90 (294)
                      .++|+++|++++|++   +.+|+|+||+|++|++++|+||||||||||+++|+|++.|+ +|.+.+.+. .         
T Consensus       320 ~~~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~-~G~i~~~~~-~---------  385 (552)
T TIGR03719       320 DKVIEAENLSKGFGD---KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPD-SGTIKIGET-V---------  385 (552)
T ss_pred             CeEEEEeeEEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC-CeEEEECCc-e---------
Confidence            358999999999975   57999999999999999999999999999999999998876 788876321 0         


Q ss_pred             CCcccccccccccccccCcccccccccHHHH-hhcCC--C--CcHHHHHHHHHHcCCC---cccccccCCHHHHHHHHHH
Q 022663           91 GDLSYLGGSWSKTVGSAGEIPLQGDFSAEHM-IFGVE--G--SDPVRRERLIELLDID---LQWRMHKVSDGQRRRVQIC  162 (294)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~--~~~~~~~~~l~~l~l~---~~~~~~~LSgGqkqRv~lA  162 (294)
                       .+.++++..         ..+++.++..+. .+...  .  ........+++.+++.   .++++.+|||||||||+||
T Consensus       386 -~i~~v~q~~---------~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la  455 (552)
T TIGR03719       386 -KLAYVDQSR---------DALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLA  455 (552)
T ss_pred             -EEEEEeCCc---------cccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHH
Confidence             123332210         012233343332 22211  1  1122345678888884   3788999999999999999


Q ss_pred             HHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeC-CeEE-ecccHHHHHH
Q 022663          163 MGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQD-GELR-RAEKLAELDE  240 (294)
Q Consensus       163 raL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~-G~i~-~~g~~~~~~~  240 (294)
                      |||+.+|++|||||||+|||+.++..+.++|.++    +.|||+||||++++..+||+|++|++ |++. +.|+.+++.+
T Consensus       456 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~  531 (552)
T TIGR03719       456 KTLKSGGNVLLLDEPTNDLDVETLRALEEALLEF----AGCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEE  531 (552)
T ss_pred             HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHC----CCeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHHH
Confidence            9999999999999999999999999999999875    24899999999999999999999997 5765 5677766543

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=100.00  E-value=1.7e-39  Score=281.93  Aligned_cols=185  Identities=16%  Similarity=0.180  Sum_probs=141.6

Q ss_pred             CceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEE-ecCCcccccccccccCCcccccccccccccccC
Q 022663           30 PLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQ-VLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAG  108 (294)
Q Consensus        30 ~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (294)
                      ++|+||||+|++|++++|+||||||||||+|+|+|+++|+ +|.+. +.+....             .+.          
T Consensus         1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~-sG~i~~~~~~~~~-------------~~~----------   56 (213)
T PRK15177          1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPD-EGDFIGLRGDALP-------------LGA----------   56 (213)
T ss_pred             CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCC-CCCEEEecCceec-------------ccc----------
Confidence            3799999999999999999999999999999999998876 77775 4432110             000          


Q ss_pred             cccccccccHHHHh-hc--CCCCcHHH-HHHHHHHcCCC--cccccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCC
Q 022663          109 EIPLQGDFSAEHMI-FG--VEGSDPVR-RERLIELLDID--LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLD  182 (294)
Q Consensus       109 ~~~~~~~~~~~~~~-~~--~~~~~~~~-~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD  182 (294)
                      ...+++.++..+++ +.  ........ ...+.+.+++.  .++++.+||+|||||++|||||+.+|+++||||||++||
T Consensus        57 ~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD  136 (213)
T PRK15177         57 NSFILPGLTGEENARMMASLYGLDGDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGD  136 (213)
T ss_pred             ccccCCcCcHHHHHHHHHHHcCCCHHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCC
Confidence            11123344443332 21  11222222 23333445554  477889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHH
Q 022663          183 VVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDE  240 (294)
Q Consensus       183 ~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  240 (294)
                      +.++..+.+.|.+..+  +.|+|++||+++++..+||++++|++|++++.++.++...
T Consensus       137 ~~~~~~~~~~l~~~~~--~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  192 (213)
T PRK15177        137 NATQLRMQAALACQLQ--QKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQATA  192 (213)
T ss_pred             HHHHHHHHHHHHHHhh--CCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHHHH
Confidence            9999999998866543  4689999999999999999999999999999998887643

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=100.00  E-value=1.3e-39  Score=323.81  Aligned_cols=200  Identities=21%  Similarity=0.321  Sum_probs=156.5

Q ss_pred             ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663           12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG   91 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~   91 (294)
                      ++|+++||+++|++   +++|+|+||+|.+|++++|+||||||||||||+|+|++.|+ +|.+.+ |...          
T Consensus       318 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~-~G~i~~-~~~~----------  382 (635)
T PRK11147        318 IVFEMENVNYQIDG---KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQAD-SGRIHC-GTKL----------  382 (635)
T ss_pred             ceEEEeeeEEEECC---eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-CcEEEE-CCCc----------
Confidence            47999999999975   57999999999999999999999999999999999998876 788876 3221          


Q ss_pred             CcccccccccccccccCcccccccccHHHHh-hcCCC----CcHHHHHHHHHHcCCC---cccccccCCHHHHHHHHHHH
Q 022663           92 DLSYLGGSWSKTVGSAGEIPLQGDFSAEHMI-FGVEG----SDPVRRERLIELLDID---LQWRMHKVSDGQRRRVQICM  163 (294)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~l~~l~l~---~~~~~~~LSgGqkqRv~lAr  163 (294)
                      .+.|+.+..         ..+.+..+..+.+ +....    .....+..+++.+++.   .++++.+|||||||||+|||
T Consensus       383 ~i~y~~q~~---------~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~  453 (635)
T PRK11147        383 EVAYFDQHR---------AELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLAR  453 (635)
T ss_pred             EEEEEeCcc---------cccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHH
Confidence            122332210         0122333433322 21111    1123456678888874   47789999999999999999


Q ss_pred             HHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEee-CCeEEe-cccHHHHH
Q 022663          164 GLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQ-DGELRR-AEKLAELD  239 (294)
Q Consensus       164 aL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~-~G~i~~-~g~~~~~~  239 (294)
                      ||+.+|++|||||||+|||+.++..+.++|.++    +.|||+||||++++..+||++++|+ +|++.. .|+++++.
T Consensus       454 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~  527 (635)
T PRK11147        454 LFLKPSNLLILDEPTNDLDVETLELLEELLDSY----QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDAR  527 (635)
T ss_pred             HHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC----CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHHH
Confidence            999999999999999999999999999888754    5699999999999999999999998 899864 67777764

>PRK13409 putative ATPase RIL; Provisional

Probab=100.00  E-value=9.7e-40  Score=320.88  Aligned_cols=195  Identities=22%  Similarity=0.216  Sum_probs=156.1

Q ss_pred             cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663           11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS   90 (294)
Q Consensus        11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~   90 (294)
                      .++|+++|++++|++    ..|+++||+|.+||+++|+||||||||||+|+|+|++.|+ +|.+.+. .           
T Consensus       338 ~~~l~~~~ls~~~~~----~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~-~G~I~~~-~-----------  400 (590)
T PRK13409        338 ETLVEYPDLTKKLGD----FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPD-EGEVDPE-L-----------  400 (590)
T ss_pred             ceEEEEcceEEEECC----EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEEe-e-----------
Confidence            357999999999964    3599999999999999999999999999999999998886 7777653 0           


Q ss_pred             CCcccccccccccccccCcccccccccHHHHh-hcCCCC-cHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHHHc
Q 022663           91 GDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMI-FGVEGS-DPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMGLL  166 (294)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL~  166 (294)
                       .+.+.++..          ......+..+++ +..... ......++++.+++.  .++++.+|||||||||+|||||+
T Consensus       401 -~i~y~~Q~~----------~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~  469 (590)
T PRK13409        401 -KISYKPQYI----------KPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLS  469 (590)
T ss_pred             -eEEEecccc----------cCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHh
Confidence             123332221          112233443332 211111 123456788888885  58899999999999999999999


Q ss_pred             cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEeccc
Q 022663          167 HPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEK  234 (294)
Q Consensus       167 ~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~  234 (294)
                      .+|++|||||||+|||+.++..+.++|++++++.|.|||+||||++++..+|||+++|++ ++...|.
T Consensus       470 ~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~  536 (590)
T PRK13409        470 RDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPGKHGH  536 (590)
T ss_pred             cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeee
Confidence            999999999999999999999999999999876789999999999999999999999964 7766665

>PLN03073 ABC transporter F family; Provisional

Probab=100.00  E-value=1.9e-39  Score=324.39  Aligned_cols=202  Identities=22%  Similarity=0.284  Sum_probs=155.5

Q ss_pred             ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663           12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG   91 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~   91 (294)
                      ++|+++||+++|++  .+++|+|+||+|.+|++++|+||||||||||||+|+|++.|+ +|.+.+.+..           
T Consensus       507 ~~L~~~~ls~~y~~--~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~-~G~I~~~~~~-----------  572 (718)
T PLN03073        507 PIISFSDASFGYPG--GPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPS-SGTVFRSAKV-----------  572 (718)
T ss_pred             ceEEEEeeEEEeCC--CCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-CceEEECCce-----------
Confidence            58999999999964  246999999999999999999999999999999999998886 7888764321           


Q ss_pred             CcccccccccccccccCcccccccccHHHHhhcCCCCcHHHHHHHHHHcCCC---cccccccCCHHHHHHHHHHHHHccC
Q 022663           92 DLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDID---LQWRMHKVSDGQRRRVQICMGLLHP  168 (294)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~---~~~~~~~LSgGqkqRv~lAraL~~~  168 (294)
                      .+.|+++....      ....... ....+...........+..+++.+++.   .++++.+|||||||||+|||||+.+
T Consensus       573 ~igyv~Q~~~~------~l~~~~~-~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~  645 (718)
T PLN03073        573 RMAVFSQHHVD------GLDLSSN-PLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKK  645 (718)
T ss_pred             eEEEEeccccc------cCCcchh-HHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcC
Confidence            12333322100      0000000 000000011122345567788999985   4678999999999999999999999


Q ss_pred             CCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEE-ecccHHHH
Q 022663          169 FKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELR-RAEKLAEL  238 (294)
Q Consensus       169 p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~  238 (294)
                      |++|||||||+|||+.++..+++.|.++    +.|||+||||++++..+||++++|++|+++ ..|+++++
T Consensus       646 p~lLLLDEPT~~LD~~s~~~l~~~L~~~----~gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~  712 (718)
T PLN03073        646 PHILLLDEPSNHLDLDAVEALIQGLVLF----QGGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDY  712 (718)
T ss_pred             CCEEEEcCCCCCCCHHHHHHHHHHHHHc----CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence            9999999999999999999998887653    349999999999999999999999999998 67877665

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=100.00  E-value=4.4e-40  Score=298.18  Aligned_cols=226  Identities=22%  Similarity=0.318  Sum_probs=172.6

Q ss_pred             cccEEEcceEEEcCCC-CCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccC----CCceEEecCCcccccc
Q 022663           11 LNSIKVCGMQFSYEGN-DKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVG----GRDVVQVLNRSSFHDT   85 (294)
Q Consensus        11 ~~~l~~~~ls~~y~~~-~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~----~~g~i~~~~~~~~~~~   85 (294)
                      ++.|+++||++.|... +...++++|||+|.+||.++|||+||||||-..+.|+|+++..    .+|.+.+.|.+.....
T Consensus         4 ~~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~s   83 (534)
T COG4172           4 MPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAAS   83 (534)
T ss_pred             CcceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCC
Confidence            5689999999999621 2356999999999999999999999999999999999987542    3678888888754321


Q ss_pred             cccccCCcccccccccccccccCccc---ccccccH-HHH----hh--cCCC-CcHHHHHHHHHHcCCC-----cccccc
Q 022663           86 QLVCSGDLSYLGGSWSKTVGSAGEIP---LQGDFSA-EHM----IF--GVEG-SDPVRRERLIELLDID-----LQWRMH  149 (294)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~----~~--~~~~-~~~~~~~~~l~~l~l~-----~~~~~~  149 (294)
                      .....       ...-..++++++.+   +-+-.+. .++    .+  +... ..+.+..++++..++.     ++.+|+
T Consensus        84 e~~lr-------~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPH  156 (534)
T COG4172          84 ERQLR-------GVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPH  156 (534)
T ss_pred             HHHHh-------hhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCc
Confidence            11000       00011233333221   1111111 111    11  1111 1123445667777774     578999


Q ss_pred             cCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeE
Q 022663          150 KVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL  229 (294)
Q Consensus       150 ~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i  229 (294)
                      +|||||||||+||.||+++|++||.||||++||...+.+|+++|+++.++.|.++++||||+..+.++||||++|.+|++
T Consensus       157 eLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~i  236 (534)
T COG4172         157 ELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEI  236 (534)
T ss_pred             ccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecccHHHHHHhhh
Q 022663          230 RRAEKLAELDELRN  243 (294)
Q Consensus       230 ~~~g~~~~~~~~~~  243 (294)
                      ++.|..+.++..+.
T Consensus       237 vE~~~t~~lF~~Pq  250 (534)
T COG4172         237 VETGTTETLFAAPQ  250 (534)
T ss_pred             eecCcHHHHhhCCC
Confidence            99999999988754

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=100.00  E-value=9e-40  Score=347.27  Aligned_cols=216  Identities=20%  Similarity=0.251  Sum_probs=169.3

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccC-----------------------
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVG-----------------------   69 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~-----------------------   69 (294)
                      .|+++||+|+|++..+.++|+|+||+|++|+++||+||||||||||+++|.|++.|.                       
T Consensus      1165 ~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~ 1244 (1466)
T PTZ00265       1165 KIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQG 1244 (1466)
T ss_pred             eEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccc
Confidence            599999999997432357999999999999999999999999999999999999873                       


Q ss_pred             ------------------------------CCceEEecCCcccccccccccCCcccccccccccccccCcc-cccccccH
Q 022663           70 ------------------------------GRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEI-PLQGDFSA  118 (294)
Q Consensus        70 ------------------------------~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  118 (294)
                                                    .+|.|.++|.+....           ....++..+++++|. .++.....
T Consensus      1245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~-----------~~~~lR~~i~~V~Qep~LF~gTIr 1313 (1466)
T PTZ00265       1245 DEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDY-----------NLKDLRNLFSIVSQEPMLFNMSIY 1313 (1466)
T ss_pred             ccccccccccccccccccccccccccccCCCCCeEEECCEEHHhC-----------CHHHHHhhccEeCCCCccccccHH
Confidence                                          367777777654221           112345566777664 44544445


Q ss_pred             HHHhhcCCCCcHHHHHHHHHHcCCC---------cc----cccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHH
Q 022663          119 EHMIFGVEGSDPVRRERLIELLDID---------LQ----WRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVA  185 (294)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~l~~l~l~---------~~----~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~  185 (294)
                      +++.++......+.+.++++..++.         .+    .+...||||||||++|||||+.+|+|||||||||+||+++
T Consensus      1314 eNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~s 1393 (1466)
T PTZ00265       1314 ENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNS 1393 (1466)
T ss_pred             HHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHH
Confidence            6666665444555566666655431         23    3445799999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeC----CeEE-ecccHHHHHH
Q 022663          186 RMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQD----GELR-RAEKLAELDE  240 (294)
Q Consensus       186 ~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~----G~i~-~~g~~~~~~~  240 (294)
                      .+.|.+.|.++....++|+|+|||++..+. .||+|++|++    |+++ +.|+.+++.+
T Consensus      1394 E~~I~~~L~~~~~~~~~TvIiIaHRlsti~-~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~ 1452 (1466)
T PTZ00265       1394 EKLIEKTIVDIKDKADKTIITIAHRIASIK-RSDKIVVFNNPDRTGSFVQAHGTHEELLS 1452 (1466)
T ss_pred             HHHHHHHHHHHhccCCCEEEEEechHHHHH-hCCEEEEEeCCCCCCCEEEEecCHHHHHh
Confidence            999999998864224899999999998876 5999999999    8955 8999999875

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=1.2e-39  Score=279.00  Aligned_cols=187  Identities=21%  Similarity=0.290  Sum_probs=141.8

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      ||+++|++++|++   +.+++ +||+|++||+++|+|+||||||||+++|+|+..|+ +|.+.++|.+.....    ...
T Consensus         1 ~l~~~~l~~~~~~---~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~i~~~~----~~~   71 (195)
T PRK13541          1 MLSLHQLQFNIEQ---KNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPS-SGNIYYKNCNINNIA----KPY   71 (195)
T ss_pred             CeEEEEeeEEECC---cEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC-CcEEEECCcccChhh----hhh
Confidence            4889999999964   45555 99999999999999999999999999999998876 899998886532100    001


Q ss_pred             cccccccccccccccCc-ccccccccHHH-HhhcCCC-CcHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHHHcc
Q 022663           93 LSYLGGSWSKTVGSAGE-IPLQGDFSAEH-MIFGVEG-SDPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMGLLH  167 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~-~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL~~  167 (294)
                      +.+           +++ ..+....+..+ +.+.... ...+....+++.+++.  .++++.+|||||+||++||||++.
T Consensus        72 ~~~-----------~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~  140 (195)
T PRK13541         72 CTY-----------IGHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIAC  140 (195)
T ss_pred             EEe-----------ccCCcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhc
Confidence            112           221 12223334333 3221111 1233456777888875  577889999999999999999999


Q ss_pred             CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceE
Q 022663          168 PFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHL  221 (294)
Q Consensus       168 ~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v  221 (294)
                      +|++|||||||++||+.++..+.++|.+.. +.+.|||++|||++++.. +|.+
T Consensus       141 ~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~~tiii~sh~~~~i~~-~~~~  192 (195)
T PRK13541        141 QSDLWLLDEVETNLSKENRDLLNNLIVMKA-NSGGIVLLSSHLESSIKS-AQIL  192 (195)
T ss_pred             CCCEEEEeCCcccCCHHHHHHHHHHHHHHH-hCCCEEEEEeCCccccch-hhee
Confidence            999999999999999999999999997654 458999999999998876 6654

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=100.00  E-value=1.1e-39  Score=274.54  Aligned_cols=154  Identities=23%  Similarity=0.242  Sum_probs=129.0

Q ss_pred             cceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcccc
Q 022663           17 CGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYL   96 (294)
Q Consensus        17 ~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~   96 (294)
                      .||+++|++   +.+++++ |+|++||+++|+||||||||||+|+|+|++.|+ +|.+.+++..            +.+.
T Consensus         4 ~~l~~~~~~---~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~------------i~~~   66 (177)
T cd03222           4 PDCVKRYGV---FFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPN-GDNDEWDGIT------------PVYK   66 (177)
T ss_pred             CCeEEEECC---EEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCC-CcEEEECCEE------------EEEE
Confidence            689999975   5688884 999999999999999999999999999998886 7888765531            1110


Q ss_pred             cccccccccccCcccccccccHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHHHccCCCEEEeeC
Q 022663           97 GGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDE  176 (294)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDE  176 (294)
                                 ++.                                     + .||||||||++|||||+.+|+++||||
T Consensus        67 -----------~q~-------------------------------------~-~LSgGq~qrv~laral~~~p~lllLDE   97 (177)
T cd03222          67 -----------PQY-------------------------------------I-DLSGGELQRVAIAAALLRNATFYLFDE   97 (177)
T ss_pred             -----------ccc-------------------------------------C-CCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence                       000                                     0 099999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEec--ccHH
Q 022663          177 ITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRA--EKLA  236 (294)
Q Consensus       177 Pt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~--g~~~  236 (294)
                      ||++||+.++..+.++|.+++++.+.|||++|||++++..+||++++|+++-.+..  +.+.
T Consensus        98 Pts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~~~~~~~~~  159 (177)
T cd03222          98 PSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGVYGIASQPK  159 (177)
T ss_pred             CcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCccceeccCCc
Confidence            99999999999999999988654348999999999999999999999998765433  4444

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=100.00  E-value=2e-39  Score=317.87  Aligned_cols=201  Identities=23%  Similarity=0.307  Sum_probs=153.5

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      .|+++||+|+|++  +.++|+|+||+|++|++++|+||||||||||+++|+|++.|+ +|.+.++|.+......      
T Consensus       322 ~i~~~~v~f~y~~--~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~-~G~i~~~g~~~~~~~~------  392 (547)
T PRK10522        322 TLELRNVTFAYQD--NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQ-SGEILLDGKPVTAEQP------  392 (547)
T ss_pred             eEEEEEEEEEeCC--CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CeEEEECCEECCCCCH------
Confidence            6999999999974  246999999999999999999999999999999999999886 8999998875422110      


Q ss_pred             cccccccccccccccCcc-cccccccHHHHhhcCCCCcHHHHHHHHHHcCCCc--c---c--ccccCCHHHHHHHHHHHH
Q 022663           93 LSYLGGSWSKTVGSAGEI-PLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDL--Q---W--RMHKVSDGQRRRVQICMG  164 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~--~---~--~~~~LSgGqkqRv~lAra  164 (294)
                           ..++..++++++. .+++....++   + ...+.+...++++.+++..  .   .  ....||||||||++||||
T Consensus       393 -----~~~~~~i~~v~q~~~lf~~ti~~n---~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARa  463 (547)
T PRK10522        393 -----EDYRKLFSAVFTDFHLFDQLLGPE---G-KPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLA  463 (547)
T ss_pred             -----HHHhhheEEEecChhHHHHhhccc---c-CchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHH
Confidence                 1122233333332 2222211111   0 1123344566777777642  1   1  135899999999999999


Q ss_pred             HccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEec
Q 022663          165 LLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRA  232 (294)
Q Consensus       165 L~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~  232 (294)
                      ++++|++|||||||++||+.+.+.+.+.+.+..++.++|+|+|||+++.+. .||+|++|++|++++.
T Consensus       464 l~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~e~  530 (547)
T PRK10522        464 LAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFI-HADRLLEMRNGQLSEL  530 (547)
T ss_pred             HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHH-hCCEEEEEECCEEEEe
Confidence            999999999999999999999999999987765445899999999998654 7999999999999876

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=100.00  E-value=9.1e-40  Score=278.60  Aligned_cols=173  Identities=28%  Similarity=0.330  Sum_probs=129.4

Q ss_pred             CCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcccccccccccccccC
Q 022663           29 PPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAG  108 (294)
Q Consensus        29 ~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (294)
                      +.+|+++||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|.+......     ..    ..++..+++++
T Consensus         5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~-~G~i~~~g~~~~~~~~-----~~----~~~~~~i~~~~   74 (190)
T TIGR01166         5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQ-SGAVLIDGEPLDYSRK-----GL----LERRQRVGLVF   74 (190)
T ss_pred             cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-ceeEEECCEEcccccc-----ch----HHHHhhEEEEe
Confidence            56999999999999999999999999999999999998876 8899888865321000     00    00111223333


Q ss_pred             ccc---ccccccH-HHHhhcC--CCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHHHccCCCEEEeeC
Q 022663          109 EIP---LQGDFSA-EHMIFGV--EGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDE  176 (294)
Q Consensus       109 ~~~---~~~~~~~-~~~~~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDE  176 (294)
                      +.+   ++. .+. +++.+..  ....    .+++.++++.+++.  .++++.+||||||||++|||||+.+|++|||||
T Consensus        75 q~~~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE  153 (190)
T TIGR01166        75 QDPDDQLFA-ADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDE  153 (190)
T ss_pred             cChhhcccc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence            221   222 233 3332211  1111    12456778888885  578899999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhH
Q 022663          177 ITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDG  213 (294)
Q Consensus       177 Pt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~  213 (294)
                      ||+|||+.++..+.++|.++.+ .|.|||++|||+++
T Consensus       154 Pt~~LD~~~~~~~~~~l~~~~~-~~~tili~sH~~~~  189 (190)
T TIGR01166       154 PTAGLDPAGREQMLAILRRLRA-EGMTVVISTHDVDL  189 (190)
T ss_pred             CcccCCHHHHHHHHHHHHHHHH-cCCEEEEEeecccc
Confidence            9999999999999999998865 48999999999875

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>PLN03211 ABC transporter G-25; Provisional

Probab=100.00  E-value=1.2e-39  Score=323.75  Aligned_cols=207  Identities=23%  Similarity=0.243  Sum_probs=161.2

Q ss_pred             EEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccC-CCceEEecCCcccccccccccCCc
Q 022663           15 KVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVG-GRDVVQVLNRSSFHDTQLVCSGDL   93 (294)
Q Consensus        15 ~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~-~~g~i~~~~~~~~~~~~~~~~~~~   93 (294)
                      .++|++++|++   +.+|+|+|+++++||+++|+||||||||||+++|+|...+. .+|.+.++|.+....         
T Consensus        70 ~~~~l~~~~~~---~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~---------  137 (659)
T PLN03211         70 KISDETRQIQE---RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQ---------  137 (659)
T ss_pred             ccccccccCCC---CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchh---------
Confidence            35567777754   57999999999999999999999999999999999987764 378999888653210         


Q ss_pred             ccccccccccccccCc-ccccccccHHHHh-hc--C--C-CCc----HHHHHHHHHHcCCC--c-----ccccccCCHHH
Q 022663           94 SYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-FG--V--E-GSD----PVRRERLIELLDID--L-----QWRMHKVSDGQ  155 (294)
Q Consensus        94 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~--~--~-~~~----~~~~~~~l~~l~l~--~-----~~~~~~LSgGq  155 (294)
                            ..+.++++.+ ..+++.++..+.+ +.  .  . ...    .++++++++.+++.  .     ++.+..|||||
T Consensus       138 ------~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGe  211 (659)
T PLN03211        138 ------ILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGE  211 (659)
T ss_pred             ------hccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhh
Confidence                  0112333333 2334445554432 21  1  1 111    12356778888884  2     34567899999


Q ss_pred             HHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChh-HHHhhhceEEEeeCCeEEeccc
Q 022663          156 RRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFD-GLETWATHLAYIQDGELRRAEK  234 (294)
Q Consensus       156 kqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~-~~~~~~d~v~~l~~G~i~~~g~  234 (294)
                      ||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||+++ .+.++||++++|++|+++..|+
T Consensus       212 rqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~-~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~  290 (659)
T PLN03211        212 RKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQ-KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGK  290 (659)
T ss_pred             hhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECC
Confidence            9999999999999999999999999999999999999999875 5899999999998 5889999999999999999999


Q ss_pred             HHHHHH
Q 022663          235 LAELDE  240 (294)
Q Consensus       235 ~~~~~~  240 (294)
                      .+++.+
T Consensus       291 ~~~~~~  296 (659)
T PLN03211        291 GSDAMA  296 (659)
T ss_pred             HHHHHH
Confidence            988754

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=100.00  E-value=2.6e-39  Score=287.74  Aligned_cols=201  Identities=20%  Similarity=0.218  Sum_probs=145.3

Q ss_pred             cceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEE-----------ecCCcccccc
Q 022663           17 CGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQ-----------VLNRSSFHDT   85 (294)
Q Consensus        17 ~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~-----------~~~~~~~~~~   85 (294)
                      .+|+++|+.  ...+|+|+|+ +.+||+++|+||||||||||+|+|+|++.|+ .|.+.           ++|.+.....
T Consensus         4 ~~~~~~y~~--~~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~-~G~I~~~~~~~~~~~~~~g~~~~~~~   79 (255)
T cd03236           4 DEPVHRYGP--NSFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPN-LGKFDDPPDWDEILDEFRGSELQNYF   79 (255)
T ss_pred             cCcceeecC--cchhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCC-CceEeeccccchhhhhccCchhhhhh
Confidence            479999964  2358999995 9999999999999999999999999999887 88875           3333211000


Q ss_pred             cccccCCcccccccccccccccCc-ccccccccHHHHhhcCCC-CcHHHHHHHHHHcCCC--cccccccCCHHHHHHHHH
Q 022663           86 QLVCSGDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMIFGVEG-SDPVRRERLIELLDID--LQWRMHKVSDGQRRRVQI  161 (294)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~l  161 (294)
                      .......         ..+++..+ ..+.+.....++...... .......++++.+++.  .++.+.+||||||||++|
T Consensus        80 ~~~~~~~---------~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~l  150 (255)
T cd03236          80 TKLLEGD---------VKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAI  150 (255)
T ss_pred             HHhhhcc---------cceeeecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHH
Confidence            0000000         00111111 122221111222211111 1224456788888885  477889999999999999


Q ss_pred             HHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEec
Q 022663          162 CMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRA  232 (294)
Q Consensus       162 AraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~  232 (294)
                      ||||+.+|+++||||||++||+.++..+.+.|.++.+ .+.|||++|||++++..+||+|++|+ |++.+.
T Consensus       151 aral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~-~~~tIIiiSHd~~~~~~~ad~i~~l~-~~~~~~  219 (255)
T cd03236         151 AAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAE-DDNYVLVVEHDLAVLDYLSDYIHCLY-GEPGAY  219 (255)
T ss_pred             HHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEECCHHHHHHhCCEEEEEC-CCCCcc
Confidence            9999999999999999999999999999999998865 48999999999999999999999995 555543

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=100.00  E-value=5.2e-39  Score=315.23  Aligned_cols=204  Identities=19%  Similarity=0.257  Sum_probs=152.7

Q ss_pred             cEEEcceEEEcCCCC--CCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663           13 SIKVCGMQFSYEGND--KPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS   90 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~--~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~   90 (294)
                      .|+++||+|+|++.+  .+++|+|+||+|++|++++|+||||||||||+++|+|++.|+ +|.+.++|.+......    
T Consensus       337 ~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~-~G~i~~~g~~i~~~~~----  411 (555)
T TIGR01194       337 SIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQ-EGEILLDGAAVSADSR----  411 (555)
T ss_pred             eEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEECCEECCCCCH----
Confidence            599999999997521  135999999999999999999999999999999999999887 8999998875432110    


Q ss_pred             CCcccccccccccccccCc-ccccccccHHHHhhcCCCCcHHHHHHHHHHcCCCc--c------cccccCCHHHHHHHHH
Q 022663           91 GDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDL--Q------WRMHKVSDGQRRRVQI  161 (294)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~--~------~~~~~LSgGqkqRv~l  161 (294)
                             ..++..++++.+ ..++.....++.   ......++..++++.+++..  +      .....||||||||++|
T Consensus       412 -------~~~~~~i~~v~q~~~lf~~ti~~n~---~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlal  481 (555)
T TIGR01194       412 -------DDYRDLFSAIFADFHLFDDLIGPDE---GEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLAL  481 (555)
T ss_pred             -------HHHHhhCcEEccChhhhhhhhhccc---ccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHH
Confidence                   112233444333 222322222221   11123344566777777641  1      1236799999999999


Q ss_pred             HHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEec
Q 022663          162 CMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRA  232 (294)
Q Consensus       162 AraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~  232 (294)
                      |||++.+|++|||||||++||+.+++.+.+.+.+..+..++|+|+|||+++.+ ..||+|++|++|++++.
T Consensus       482 aRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~-~~~d~i~~l~~G~i~~~  551 (555)
T TIGR01194       482 ICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYF-ELADQIIKLAAGCIVKD  551 (555)
T ss_pred             HHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHH-HhCCEEEEEECCEEEEe
Confidence            99999999999999999999999999998866433334589999999999866 47999999999999764

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=2e-39  Score=268.76  Aligned_cols=216  Identities=19%  Similarity=0.283  Sum_probs=171.7

Q ss_pred             ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecC-Cccccccccccc
Q 022663           12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLN-RSSFHDTQLVCS   90 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~-~~~~~~~~~~~~   90 (294)
                      +.|++++|+++|++   ..+|+++||+|.+||.-+|||||||||||++.+|+|...|+ .|.+.+.| .+.......   
T Consensus         4 ~iL~~~~vsVsF~G---F~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~-~G~v~f~g~~dl~~~~e~---   76 (249)
T COG4674           4 IILYLDGVSVSFGG---FKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQ-EGEVLFDGDTDLTKLPEH---   76 (249)
T ss_pred             ceEEEeceEEEEcc---eeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCC-cceEEEcCchhhccCCHH---
Confidence            47999999999987   67999999999999999999999999999999999998886 88988887 332211100   


Q ss_pred             CCcccccccccccccccCc-ccccccccHHHHh-hc--------------CCCCcHHHHHHHHHHcCCC--cccccccCC
Q 022663           91 GDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-FG--------------VEGSDPVRRERLIELLDID--LQWRMHKVS  152 (294)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~--------------~~~~~~~~~~~~l~~l~l~--~~~~~~~LS  152 (294)
                       .+.      +..++.-++ +..+..+++.+++ ..              .......+++++++..++.  .+.....||
T Consensus        77 -~IA------r~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LS  149 (249)
T COG4674          77 -RIA------RAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLS  149 (249)
T ss_pred             -HHH------HhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhc
Confidence             000      112222223 3345555554432 11              1112234667888888875  466788999


Q ss_pred             HHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEec
Q 022663          153 DGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRA  232 (294)
Q Consensus       153 gGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~  232 (294)
                      .||||++.|+..++++|++|+||||++|+-.....+..++|+.++.  ..+|++|.||++++..+|++|-+|+.|.+...
T Consensus       150 HGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~--~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~E  227 (249)
T COG4674         150 HGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG--KHSILVVEHDMGFVREIADKVTVLHEGSVLAE  227 (249)
T ss_pred             cchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc--CceEEEEeccHHHHHHhhheeEEEeccceeec
Confidence            9999999999999999999999999999999999999999999864  57999999999999999999999999999999


Q ss_pred             ccHHHHHHhhh
Q 022663          233 EKLAELDELRN  243 (294)
Q Consensus       233 g~~~~~~~~~~  243 (294)
                      |+.+++.+++.
T Consensus       228 Gsld~v~~dp~  238 (249)
T COG4674         228 GSLDEVQNDPK  238 (249)
T ss_pred             ccHHHhhcCcc
Confidence            99999876543

>PLN03232 ABC transporter C family member; Provisional

Probab=100.00  E-value=9.5e-39  Score=341.49  Aligned_cols=213  Identities=19%  Similarity=0.239  Sum_probs=168.4

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      .|+++||+++|+.. .+++|+|+||+|++||.+||+|+||||||||+++|.|++.|+ +|.|.++|.+...-.       
T Consensus      1234 ~I~f~nVsf~Y~~~-~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~-~G~I~IdG~di~~i~------- 1304 (1495)
T PLN03232       1234 SIKFEDVHLRYRPG-LPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELE-KGRIMIDDCDVAKFG------- 1304 (1495)
T ss_pred             cEEEEEEEEEECCC-CCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC-CceEEECCEEhhhCC-------
Confidence            59999999999542 257999999999999999999999999999999999999887 899999997653211       


Q ss_pred             cccccccccccccccCcc-cccccccHHHHhhcCCCCcHHHHHHHHHHcCCC---------c----ccccccCCHHHHHH
Q 022663           93 LSYLGGSWSKTVGSAGEI-PLQGDFSAEHMIFGVEGSDPVRRERLIELLDID---------L----QWRMHKVSDGQRRR  158 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~---------~----~~~~~~LSgGqkqR  158 (294)
                          ...++..+++++|. .++.. |..+++......+.+...++++..++.         +    ......||||||||
T Consensus      1305 ----~~~lR~~i~iVpQdp~LF~g-TIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQr 1379 (1495)
T PLN03232       1305 ----LTDLRRVLSIIPQSPVLFSG-TVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQL 1379 (1495)
T ss_pred             ----HHHHHhhcEEECCCCeeeCc-cHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHH
Confidence                11234455555553 34444 444433222233444555566655431         2    23445799999999


Q ss_pred             HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663          159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL  238 (294)
Q Consensus       159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~  238 (294)
                      ++|||||+++|+|||||||||+||+++.+.+.+.|++..  .++|+|+|+|+++.+.. ||+|++|++|++++.|+++++
T Consensus      1380 laLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~--~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ivE~Gt~~eL 1456 (1495)
T PLN03232       1380 LSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF--KSCTMLVIAHRLNTIID-CDKILVLSSGQVLEYDSPQEL 1456 (1495)
T ss_pred             HHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc--CCCEEEEEeCCHHHHHh-CCEEEEEECCEEEEECCHHHH
Confidence            999999999999999999999999999999999998763  37999999999999886 999999999999999999999


Q ss_pred             HHhh
Q 022663          239 DELR  242 (294)
Q Consensus       239 ~~~~  242 (294)
                      .+..
T Consensus      1457 l~~~ 1460 (1495)
T PLN03232       1457 LSRD 1460 (1495)
T ss_pred             HhCC
Confidence            8653

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=8.6e-39  Score=323.56  Aligned_cols=214  Identities=22%  Similarity=0.293  Sum_probs=176.8

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      .|+++||+|+|+.+.+.+||+|+||+|++|+.+||||||||||||.+.+|-..+.|+ .|.+.++|.+...-.       
T Consensus       987 ~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~-~G~V~IDg~dik~ln------- 1058 (1228)
T KOG0055|consen  987 DIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPD-AGKVKIDGVDIKDLN------- 1058 (1228)
T ss_pred             EEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCC-CCeEEECCcccccCC-------
Confidence            599999999999766678999999999999999999999999999999999999987 999999988753211       


Q ss_pred             cccccccccccccccCc-ccccccccHHHHhhcCCCCcHHHHHHHHHHcCC-------C--cc----cccccCCHHHHHH
Q 022663           93 LSYLGGSWSKTVGSAGE-IPLQGDFSAEHMIFGVEGSDPVRRERLIELLDI-------D--LQ----WRMHKVSDGQRRR  158 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l-------~--~~----~~~~~LSgGqkqR  158 (294)
                          ...++.+++.+.| +.++...-.+|+.++....+.+.+.++++..+.       +  .|    .+..+||||||||
T Consensus      1059 ----l~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQR 1134 (1228)
T KOG0055|consen 1059 ----LKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQR 1134 (1228)
T ss_pred             ----HHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHH
Confidence                1123556666666 445555556777788433455555555555432       1  23    4556899999999


Q ss_pred             HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663          159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL  238 (294)
Q Consensus       159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~  238 (294)
                      +|||||+++||+||||||.||+||.++.+.+.+.|.+..  .|.|.|+|.|.+..+.+ ||.|+|+++|+|++.|+.+++
T Consensus      1135 IAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~--~gRT~IvIAHRLSTIqn-aD~I~Vi~~G~VvE~GtH~~L 1211 (1228)
T KOG0055|consen 1135 IAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM--EGRTTIVIAHRLSTIQN-ADVIAVLKNGKVVEQGTHDEL 1211 (1228)
T ss_pred             HHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh--cCCcEEEEecchhhhhc-CCEEEEEECCEEEecccHHHH
Confidence            999999999999999999999999999999999998864  48999999999998875 999999999999999999999


Q ss_pred             HHh
Q 022663          239 DEL  241 (294)
Q Consensus       239 ~~~  241 (294)
                      .+.
T Consensus      1212 ~~~ 1214 (1228)
T KOG0055|consen 1212 LAK 1214 (1228)
T ss_pred             HhC
Confidence            874

>PLN03130 ABC transporter C family member; Provisional

Probab=100.00  E-value=1.7e-38  Score=340.29  Aligned_cols=212  Identities=19%  Similarity=0.244  Sum_probs=168.1

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      .|+++||+++|++. .+++|+|+||+|++||.+||+|++|||||||+++|.|++.|+ +|.|.++|.+...-.       
T Consensus      1237 ~I~f~nVsf~Y~~~-~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~-~G~I~IDG~dI~~i~------- 1307 (1622)
T PLN03130       1237 SIKFEDVVLRYRPE-LPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELE-RGRILIDGCDISKFG------- 1307 (1622)
T ss_pred             cEEEEEEEEEeCCC-CCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCC-CceEEECCEecccCC-------
Confidence            59999999999642 247999999999999999999999999999999999999887 899999998653211       


Q ss_pred             cccccccccccccccCcc-cccccccHHHHhhcCCCCcHHHHHHHHHHcCCC---------cc----cccccCCHHHHHH
Q 022663           93 LSYLGGSWSKTVGSAGEI-PLQGDFSAEHMIFGVEGSDPVRRERLIELLDID---------LQ----WRMHKVSDGQRRR  158 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~---------~~----~~~~~LSgGqkqR  158 (294)
                          ...++..+++++|. .++.. |..+++........+...++++..++.         ++    .....||||||||
T Consensus      1308 ----l~~LR~~IsiVpQdp~LF~G-TIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQr 1382 (1622)
T PLN03130       1308 ----LMDLRKVLGIIPQAPVLFSG-TVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQL 1382 (1622)
T ss_pred             ----HHHHHhccEEECCCCccccc-cHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHH
Confidence                11234455555553 34444 444433222223444555566554431         22    3345799999999


Q ss_pred             HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663          159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL  238 (294)
Q Consensus       159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~  238 (294)
                      ++|||||+++|+|||||||||+||..+...|.+.|++..  .++|+|+|+|+++.+.. ||+|++|++|+|++.|+++++
T Consensus      1383 laLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~--~~~TvI~IAHRL~tI~~-~DrIlVLd~G~IvE~Gt~~eL 1459 (1622)
T PLN03130       1383 LSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILVLDAGRVVEFDTPENL 1459 (1622)
T ss_pred             HHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEeCChHHHHh-CCEEEEEECCEEEEeCCHHHH
Confidence            999999999999999999999999999999999998764  37999999999999886 899999999999999999999


Q ss_pred             HHh
Q 022663          239 DEL  241 (294)
Q Consensus       239 ~~~  241 (294)
                      .+.
T Consensus      1460 l~~ 1462 (1622)
T PLN03130       1460 LSN 1462 (1622)
T ss_pred             HhC
Confidence            864

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2e-38  Score=258.69  Aligned_cols=222  Identities=25%  Similarity=0.330  Sum_probs=168.0

Q ss_pred             cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663           11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS   90 (294)
Q Consensus        11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~   90 (294)
                      .|.+++.++|+.|++   ..-.+||||++.|||+.+|+|+|||||||||+||+|-+.|+ .|++.+...+....      
T Consensus         4 ~PLL~V~~lsk~Yg~---~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~-~G~v~Y~~r~~~~~------   73 (258)
T COG4107           4 KPLLSVSGLSKLYGP---GKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPD-AGTVTYRMRDGQPR------   73 (258)
T ss_pred             CcceeehhhhhhhCC---CcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCC-CCeEEEEcCCCCch------
Confidence            568999999999986   45789999999999999999999999999999999988887 77776643321000      


Q ss_pred             CCccccccc-----ccccccccCcccccc---ccc-----HHH-HhhcCC--CCcHHHHHHHHHHcCCC---cccccccC
Q 022663           91 GDLSYLGGS-----WSKTVGSAGEIPLQG---DFS-----AEH-MIFGVE--GSDPVRRERLIELLDID---LQWRMHKV  151 (294)
Q Consensus        91 ~~~~~~~~~-----~~~~~~~~~~~~~~~---~~~-----~~~-~~~~~~--~~~~~~~~~~l~~l~l~---~~~~~~~L  151 (294)
                       ++....+.     .+...+++.+.+.-+   ..+     .+. +..+..  +.-.....++++...++   .+..|..+
T Consensus        74 -dl~~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtF  152 (258)
T COG4107          74 -DLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTF  152 (258)
T ss_pred             -hHhhhchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCccccc
Confidence             00000000     011112222222110   001     011 111111  11123456788888886   46789999


Q ss_pred             CHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEe
Q 022663          152 SDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRR  231 (294)
Q Consensus       152 SgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~  231 (294)
                      |||||||+.|||-|+..|+++++||||.|||...+..++++++.+..+.+.++++||||+..+.-+++|..+|++|++++
T Consensus       153 SGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve  232 (258)
T COG4107         153 SGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVE  232 (258)
T ss_pred             chHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccHHHHHHhhh
Q 022663          232 AEKLAELDELRN  243 (294)
Q Consensus       232 ~g~~~~~~~~~~  243 (294)
                      .|-.+.++..+.
T Consensus       233 ~GLTDrvLDDP~  244 (258)
T COG4107         233 SGLTDRVLDDPH  244 (258)
T ss_pred             cccccccccCCC
Confidence            998888776543

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=100.00  E-value=1.5e-38  Score=338.05  Aligned_cols=202  Identities=17%  Similarity=0.277  Sum_probs=151.3

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEec-CCcccccccccccC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVL-NRSSFHDTQLVCSG   91 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~-~~~~~~~~~~~~~~   91 (294)
                      .|+++||+|+|++..+.++|+|+||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++ +.+......     
T Consensus       382 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~-~G~I~i~~g~~i~~~~~-----  455 (1466)
T PTZ00265        382 KIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPT-EGDIIINDSHNLKDINL-----  455 (1466)
T ss_pred             cEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCC-CCeEEEeCCcchhhCCH-----
Confidence            599999999997532246999999999999999999999999999999999999887 8999884 443211000     


Q ss_pred             CcccccccccccccccCc-ccccccccHHHHhhcCC--------------------------------------------
Q 022663           92 DLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMIFGVE--------------------------------------------  126 (294)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--------------------------------------------  126 (294)
                            ..++..++++++ ..++.....+++.++..                                            
T Consensus       456 ------~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  529 (1466)
T PTZ00265        456 ------KWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTT  529 (1466)
T ss_pred             ------HHHHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhccccc
Confidence                  112333444444 22333322233333210                                            


Q ss_pred             -------------CCcHHHHHHHHHHcCCC-------------cccccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCC
Q 022663          127 -------------GSDPVRRERLIELLDID-------------LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVD  180 (294)
Q Consensus       127 -------------~~~~~~~~~~l~~l~l~-------------~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~g  180 (294)
                                   ....+.+.++++.+++.             ....+.+||||||||++|||||+.+|+||||||||++
T Consensus       530 ~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSa  609 (1466)
T PTZ00265        530 DSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSS  609 (1466)
T ss_pred             chhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccc
Confidence                         01123344555555431             1355778999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCC
Q 022663          181 LDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDG  227 (294)
Q Consensus       181 LD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G  227 (294)
                      ||+.++..+.+.|.++.++.|+|+|+|||+++.+ +.||+|++|++|
T Consensus       610 LD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i-~~aD~Iivl~~g  655 (1466)
T PTZ00265        610 LDNKSEYLVQKTINNLKGNENRITIIIAHRLSTI-RYANTIFVLSNR  655 (1466)
T ss_pred             cCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHH-HhCCEEEEEeCC
Confidence            9999999999999988654589999999999988 579999999986

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=100.00  E-value=9.8e-39  Score=293.67  Aligned_cols=182  Identities=26%  Similarity=0.332  Sum_probs=144.2

Q ss_pred             EECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcccccccccccccccCc-ccccccccHHHH-hhc
Q 022663           47 LVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHM-IFG  124 (294)
Q Consensus        47 liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~  124 (294)
                      |+||||||||||+|+|+|++.|+ +|.+.++|.+......             ....++++++ ..+++.++..++ .++
T Consensus         1 l~G~nGsGKSTLl~~iaGl~~p~-~G~I~i~g~~i~~~~~-------------~~~~i~~v~q~~~l~~~~tv~enl~~~   66 (325)
T TIGR01187         1 LLGPSGCGKTTLLRLLAGFEQPD-SGSIMLDGEDVTNVPP-------------HLRHINMVFQSYALFPHMTVEENVAFG   66 (325)
T ss_pred             CcCCCCCCHHHHHHHHHCCCCCC-ceEEEECCEECCCCCH-------------HHCCEEEEecCccccCCCcHHHHHHHH
Confidence            68999999999999999998886 8999998865421100             1122333333 234445554443 332


Q ss_pred             CC--CCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHH
Q 022663          125 VE--GSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDE  196 (294)
Q Consensus       125 ~~--~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~  196 (294)
                      ..  ...    ..+..++++.+++.  .++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|.++
T Consensus        67 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l  146 (325)
T TIGR01187        67 LKMRKVPRAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTI  146 (325)
T ss_pred             HhhcCCCHHHHHHHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence            21  111    23456788888885  57889999999999999999999999999999999999999999999999998


Q ss_pred             HHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHHhh
Q 022663          197 CEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDELR  242 (294)
Q Consensus       197 ~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~  242 (294)
                      .++.|.|||+||||++++..+||+|++|++|+++..|+++++.+..
T Consensus       147 ~~~~g~tiiivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~~  192 (325)
T TIGR01187       147 QEQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEEP  192 (325)
T ss_pred             HHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence            7767899999999999999999999999999999999999887643

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=100.00  E-value=2.2e-38  Score=315.39  Aligned_cols=218  Identities=23%  Similarity=0.303  Sum_probs=166.0

Q ss_pred             ccEEEcceEEEcCCCC-CCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663           12 NSIKVCGMQFSYEGND-KPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS   90 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~-~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~   90 (294)
                      ++|+++|++++|++.. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|+ .|.+.++|.+......... 
T Consensus         3 ~~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~-~G~i~~~g~~i~~~~~~~~-   80 (648)
T PRK10535          3 ALLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPT-SGTYRVAGQDVATLDADAL-   80 (648)
T ss_pred             cEEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CeEEEECCEEcCcCCHHHH-
Confidence            4799999999996311 246999999999999999999999999999999999998876 8999998875432110000 


Q ss_pred             CCcccccccccccccccCc-ccccccccH-HHHhhcC--CCC----cHHHHHHHHHHcCCC--cccccccCCHHHHHHHH
Q 022663           91 GDLSYLGGSWSKTVGSAGE-IPLQGDFSA-EHMIFGV--EGS----DPVRRERLIELLDID--LQWRMHKVSDGQRRRVQ  160 (294)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~--~~~----~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~  160 (294)
                            ....+..+++.++ ..+++..+. +++.+..  ...    ..++..++++.+++.  .++.+.+||+||+||++
T Consensus        81 ------~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~  154 (648)
T PRK10535         81 ------AQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVS  154 (648)
T ss_pred             ------HHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHH
Confidence                  0000112233332 223333443 3322211  111    122456678888885  47889999999999999


Q ss_pred             HHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHH
Q 022663          161 ICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELD  239 (294)
Q Consensus       161 lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  239 (294)
                      |||||+.+|++|||||||+|||+.+++.+.++|.++++ .+.|+|++||+++.+. .||++++|++|++++.|+.++..
T Consensus       155 LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~-~g~tilivsH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~~  231 (648)
T PRK10535        155 IARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRD-RGHTVIIVTHDPQVAA-QAERVIEIRDGEIVRNPPAQEKV  231 (648)
T ss_pred             HHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEECCCHHHHH-hCCEEEEEECCEEEeecCccccc
Confidence            99999999999999999999999999999999998764 5899999999999886 69999999999999999887664

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=100.00  E-value=1.9e-38  Score=309.78  Aligned_cols=196  Identities=24%  Similarity=0.361  Sum_probs=152.0

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      .|+++||+|+|++. ++++|+|+||+|++|++++|+||||||||||+|+|+|+++|+ +|.+.++|.+...-.       
T Consensus       320 ~i~~~~v~f~y~~~-~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~-~G~I~~~g~~i~~~~-------  390 (529)
T TIGR02857       320 SLEFSGLSVAYPGR-RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPT-EGSIAVNGVPLADAD-------  390 (529)
T ss_pred             eEEEEEEEEECCCC-CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CcEEEECCEehhhCC-------
Confidence            69999999999752 247999999999999999999999999999999999999887 899999887643211       


Q ss_pred             cccccccccccccccCcc-cccccccHHHHhhcCCCCcHHHHHHHHHHcCCC---------c----ccccccCCHHHHHH
Q 022663           93 LSYLGGSWSKTVGSAGEI-PLQGDFSAEHMIFGVEGSDPVRRERLIELLDID---------L----QWRMHKVSDGQRRR  158 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~---------~----~~~~~~LSgGqkqR  158 (294)
                          ...+++.++++++. .++.....+++.++......+...++++..++.         .    ......||||||||
T Consensus       391 ----~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qr  466 (529)
T TIGR02857       391 ----ADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQR  466 (529)
T ss_pred             ----HHHHHhheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHH
Confidence                11233445555553 344443344444443333445555566655431         1    23456799999999


Q ss_pred             HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEe
Q 022663          159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYI  224 (294)
Q Consensus       159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l  224 (294)
                      ++|||||+++|++|||||||++||+.+.+.+.+.|.++.  .++|+|+|||+++.+. .||+|++|
T Consensus       467 i~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~-~~d~i~~l  529 (529)
T TIGR02857       467 LALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALA--QGRTVLLVTHRLALAE-RADRIVVL  529 (529)
T ss_pred             HHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc--CCCEEEEEecCHHHHH-hCCEEEeC
Confidence            999999999999999999999999999999999998764  4799999999999875 69999875

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=100.00  E-value=2.4e-38  Score=261.92  Aligned_cols=156  Identities=31%  Similarity=0.439  Sum_probs=129.0

Q ss_pred             EcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCccc
Q 022663           16 VCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSY   95 (294)
Q Consensus        16 ~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~   95 (294)
                      ++++++.|++   ..+|+++||+|++|++++|+|+||||||||+++|+|++.++ .|.+.+++.......          
T Consensus         2 ~~~~~~~~~~---~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~-~G~i~~~~~~~~~~~----------   67 (157)
T cd00267           2 IENLSFRYGG---RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPT-SGEILIDGKDIAKLP----------   67 (157)
T ss_pred             eEEEEEEeCC---eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-ccEEEECCEEcccCC----------
Confidence            6789999975   46999999999999999999999999999999999998775 888877664321000          


Q ss_pred             ccccccccccccCcccccccccHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHHHccCCCEEEee
Q 022663           96 LGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLD  175 (294)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLD  175 (294)
                                            ..               .....+.     ...+||+||+||++|||+++.+|+++|||
T Consensus        68 ----------------------~~---------------~~~~~i~-----~~~qlS~G~~~r~~l~~~l~~~~~i~ilD  105 (157)
T cd00267          68 ----------------------LE---------------ELRRRIG-----YVPQLSGGQRQRVALARALLLNPDLLLLD  105 (157)
T ss_pred             ----------------------HH---------------HHHhceE-----EEeeCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence                                  00               0000000     01129999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCe
Q 022663          176 EITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGE  228 (294)
Q Consensus       176 EPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~  228 (294)
                      |||++||+.++..+.+.|.++... +.|+|++||+++++..+||++++|++|+
T Consensus       106 Ep~~~lD~~~~~~l~~~l~~~~~~-~~tii~~sh~~~~~~~~~d~i~~l~~g~  157 (157)
T cd00267         106 EPTSGLDPASRERLLELLRELAEE-GRTVIIVTHDPELAELAADRVIVLKDGK  157 (157)
T ss_pred             CCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence            999999999999999999987654 7899999999999999999999999874

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=100.00  E-value=2e-38  Score=260.46  Aligned_cols=238  Identities=16%  Similarity=0.226  Sum_probs=178.2

Q ss_pred             cccEEEcceEEEcCCCC------CCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccc
Q 022663           11 LNSIKVCGMQFSYEGND------KPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHD   84 (294)
Q Consensus        11 ~~~l~~~~ls~~y~~~~------~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~   84 (294)
                      ++.|+++|++|.|....      ...+++.|||++++|+.++|||.||||||||.|+|+|.+.|. +|.+.+++......
T Consensus         2 ~~LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PT-sG~il~n~~~L~~~   80 (267)
T COG4167           2 ETLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT-SGEILINDHPLHFG   80 (267)
T ss_pred             cchhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCC-CceEEECCcccccc
Confidence            45799999999885311      134789999999999999999999999999999999999887 99999998765332


Q ss_pred             ccccccCCcccccccccccccccCcccccccccHHHHhhc-C---CCCc----HHHHHHHHHHcCCC---cccccccCCH
Q 022663           85 TQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFG-V---EGSD----PVRRERLIELLDID---LQWRMHKVSD  153 (294)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~----~~~~~~~l~~l~l~---~~~~~~~LSg  153 (294)
                      ........+..+.++...        .+-+.+..-.++-+ +   ..++    .+++.+-+..+|+.   .+-++..||.
T Consensus        81 Dy~~R~k~IRMiFQDpnt--------s~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~  152 (267)
T COG4167          81 DYSFRSKRIRMIFQDPNT--------SLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAP  152 (267)
T ss_pred             chHhhhhheeeeecCCcc--------ccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCc
Confidence            111112222222221110        11111111111100 0   1111    22334556677774   4568899999


Q ss_pred             HHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecc
Q 022663          154 GQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAE  233 (294)
Q Consensus       154 GqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g  233 (294)
                      ||||||+|||||+.+|+|+|.||..++||...+.++.+++.++.++.|.+.|+|+.++..+..++|.|++|+.|++++.|
T Consensus       153 ~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G  232 (267)
T COG4167         153 GQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERG  232 (267)
T ss_pred             hhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecC
Confidence            99999999999999999999999999999999999999999999899999999999999999999999999999999999


Q ss_pred             cHHHHHHhhhhhhhHHHHHHHHhh
Q 022663          234 KLAELDELRNSTNLLSVVESWLRS  257 (294)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~  257 (294)
                      ++.+++..+...-.-+.+++++.+
T Consensus       233 ~t~~v~a~P~~~~TkRlieShFg~  256 (267)
T COG4167         233 STADVLASPLHELTKRLIESHFGE  256 (267)
T ss_pred             ChhhhhcCCccHHHHHHHHHHhcc
Confidence            999998876654334455555543

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=100.00  E-value=1.3e-38  Score=310.88  Aligned_cols=182  Identities=25%  Similarity=0.371  Sum_probs=145.0

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      .|+++||+|+|++  ++++|+|+||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|.+...         
T Consensus       334 ~I~~~~vsf~Y~~--~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~-~G~I~i~g~~i~~---------  401 (529)
T TIGR02868       334 TLELRDLSFGYPG--SPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPL-QGEVTLDGVSVSS---------  401 (529)
T ss_pred             eEEEEEEEEecCC--CCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CcEEEECCEEhhh---------
Confidence            5999999999975  246999999999999999999999999999999999999887 8999999876432         


Q ss_pred             cccccccccccccccCcc-cccccccHHHHhhcCCCCcHHHHHHHHHHcCCC---------cc----cccccCCHHHHHH
Q 022663           93 LSYLGGSWSKTVGSAGEI-PLQGDFSAEHMIFGVEGSDPVRRERLIELLDID---------LQ----WRMHKVSDGQRRR  158 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~---------~~----~~~~~LSgGqkqR  158 (294)
                        + ...++..++++++. .++.....+|+.++....+.++..++++..+++         .+    .....||||||||
T Consensus       402 --~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQR  478 (529)
T TIGR02868       402 --L-QDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQR  478 (529)
T ss_pred             --H-HHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHH
Confidence              1 22345556666663 345444455655654444556666677766542         12    2345699999999


Q ss_pred             HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCh
Q 022663          159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIF  211 (294)
Q Consensus       159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~  211 (294)
                      ++|||||+++|++||||||||+||+++...+.+.|.++.  .++|+|+|||++
T Consensus       479 iaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~--~~~TvIiItHrl  529 (529)
T TIGR02868       479 LALARALLADAPILLLDEPTEHLDAGTESELLEDLLAAL--SGKTVVVITHHL  529 (529)
T ss_pred             HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc--CCCEEEEEecCC
Confidence            999999999999999999999999999999999998753  478999999984

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=100.00  E-value=6.1e-38  Score=335.74  Aligned_cols=212  Identities=17%  Similarity=0.158  Sum_probs=168.2

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      .|+++||+++|+.. .+++|+||||+|++||.+||+|++|||||||+++|.|++.|+ +|.|.++|.+...-.       
T Consensus      1284 ~I~f~nVsf~Y~~~-~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~-~G~I~IdG~dI~~i~------- 1354 (1522)
T TIGR00957      1284 RVEFRNYCLRYRED-LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESA-EGEIIIDGLNIAKIG------- 1354 (1522)
T ss_pred             cEEEEEEEEEeCCC-CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCC-CCeEEECCEEccccC-------
Confidence            59999999999652 246999999999999999999999999999999999999887 899999998753211       


Q ss_pred             cccccccccccccccCcc-cccccccHHHHhhcCCCCcHHHHHHHHHHcCCC---------ccc----ccccCCHHHHHH
Q 022663           93 LSYLGGSWSKTVGSAGEI-PLQGDFSAEHMIFGVEGSDPVRRERLIELLDID---------LQW----RMHKVSDGQRRR  158 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~---------~~~----~~~~LSgGqkqR  158 (294)
                          ...++..+++++|. .++.. |..+++........+...++++..++.         ++.    ....||||||||
T Consensus      1355 ----~~~LR~~i~iVpQdp~LF~g-TIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQr 1429 (1522)
T TIGR00957      1355 ----LHDLRFKITIIPQDPVLFSG-SLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQL 1429 (1522)
T ss_pred             ----HHHHHhcCeEECCCCcccCc-cHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHH
Confidence                11234455555553 34443 444444222233445555666655431         233    345799999999


Q ss_pred             HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663          159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL  238 (294)
Q Consensus       159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~  238 (294)
                      ++|||||+++|+|||||||||+||.++...+.+.|++..  .++|||+|+|+++.+.. ||+|++|++|+|++.|+++++
T Consensus      1430 l~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~--~~~TvI~IAHRl~ti~~-~DrIlVld~G~IvE~G~~~eL 1506 (1522)
T TIGR00957      1430 VCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF--EDCTVLTIAHRLNTIMD-YTRVIVLDKGEVAEFGAPSNL 1506 (1522)
T ss_pred             HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHHHHh-CCEEEEEECCEEEEECCHHHH
Confidence            999999999999999999999999999999999998754  37899999999998886 899999999999999999999


Q ss_pred             HHh
Q 022663          239 DEL  241 (294)
Q Consensus       239 ~~~  241 (294)
                      .+.
T Consensus      1507 l~~ 1509 (1522)
T TIGR00957      1507 LQQ 1509 (1522)
T ss_pred             HhC
Confidence            765

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>PTZ00243 ABC transporter; Provisional

Probab=100.00  E-value=7.2e-38  Score=334.90  Aligned_cols=212  Identities=18%  Similarity=0.203  Sum_probs=168.9

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      .|+++||+++|++. .+++|+||||+|++||.+||+|++|||||||+++|.|++.|+ +|.|.++|.+...-.       
T Consensus      1308 ~I~f~nVsf~Y~~~-~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~-~G~I~IDG~di~~i~------- 1378 (1560)
T PTZ00243       1308 SLVFEGVQMRYREG-LPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVC-GGEIRVNGREIGAYG------- 1378 (1560)
T ss_pred             eEEEEEEEEEeCCC-CCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEECCEEcccCC-------
Confidence            59999999999652 246999999999999999999999999999999999999887 899999998753211       


Q ss_pred             cccccccccccccccCccc-ccccccHHHHhhcCCCCcHHHHHHHHHHcCCC---------cc----cccccCCHHHHHH
Q 022663           93 LSYLGGSWSKTVGSAGEIP-LQGDFSAEHMIFGVEGSDPVRRERLIELLDID---------LQ----WRMHKVSDGQRRR  158 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~---------~~----~~~~~LSgGqkqR  158 (294)
                          ...++..+++++|.+ ++.. |..+++......+.+.+.++++..++.         ++    .....||||||||
T Consensus      1379 ----l~~LR~~I~iVpQdp~LF~g-TIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQr 1453 (1560)
T PTZ00243       1379 ----LRELRRQFSMIPQDPVLFDG-TVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQL 1453 (1560)
T ss_pred             ----HHHHHhcceEECCCCccccc-cHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHH
Confidence                123445566666643 4443 444444322233455566677666542         22    2345799999999


Q ss_pred             HHHHHHHccC-CCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHH
Q 022663          159 VQICMGLLHP-FKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAE  237 (294)
Q Consensus       159 v~lAraL~~~-p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~  237 (294)
                      ++|||||+++ |+|||||||||+||+.+.+.+.+.|.+..  .++|||+|+|+++.+.. ||+|++|++|+|++.|++++
T Consensus      1454 LaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~--~~~TvI~IAHRl~ti~~-~DrIlVLd~G~VvE~Gt~~e 1530 (1560)
T PTZ00243       1454 MCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF--SAYTVITIAHRLHTVAQ-YDKIIVMDHGAVAEMGSPRE 1530 (1560)
T ss_pred             HHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC--CCCEEEEEeccHHHHHh-CCEEEEEECCEEEEECCHHH
Confidence            9999999996 89999999999999999999999998753  37899999999998875 99999999999999999999


Q ss_pred             HHHh
Q 022663          238 LDEL  241 (294)
Q Consensus       238 ~~~~  241 (294)
                      +.+.
T Consensus      1531 Ll~~ 1534 (1560)
T PTZ00243       1531 LVMN 1534 (1560)
T ss_pred             HHhC
Confidence            9764

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=100.00  E-value=1e-37  Score=262.35  Aligned_cols=157  Identities=18%  Similarity=0.223  Sum_probs=125.0

Q ss_pred             CCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcccccccccccccccC
Q 022663           29 PPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAG  108 (294)
Q Consensus        29 ~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (294)
                      .++|+|+||+|++|++++|+||||||||||||+|.+    + .|.+.+.+.....                .+..+.++.
T Consensus         8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~----~-~G~v~~~~~~~~~----------------~~~~~~~~~   66 (176)
T cd03238           8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY----A-SGKARLISFLPKF----------------SRNKLIFID   66 (176)
T ss_pred             eeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh----c-CCcEEECCccccc----------------ccccEEEEh
Confidence            568999999999999999999999999999999964    2 5666554331100                000000000


Q ss_pred             cccccccccHHHHhhcCCCCcHHHHHHHHHHcCCC---cccccccCCHHHHHHHHHHHHHccC--CCEEEeeCCCCCCCH
Q 022663          109 EIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDID---LQWRMHKVSDGQRRRVQICMGLLHP--FKVLLLDEITVDLDV  183 (294)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~---~~~~~~~LSgGqkqRv~lAraL~~~--p~iLlLDEPt~gLD~  183 (294)
                                           .   .++++.+++.   .++++.+||||||||++|||||+.+  |++|||||||++||+
T Consensus        67 ---------------------q---~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~  122 (176)
T cd03238          67 ---------------------Q---LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQ  122 (176)
T ss_pred             ---------------------H---HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCH
Confidence                                 0   3456777763   4778999999999999999999999  999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEec
Q 022663          184 VARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRA  232 (294)
Q Consensus       184 ~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~  232 (294)
                      .++..+.+.|.++++ .|.|||+|||+++++ ..||++++|++|.....
T Consensus       123 ~~~~~l~~~l~~~~~-~g~tvIivSH~~~~~-~~~d~i~~l~~g~~~~~  169 (176)
T cd03238         123 QDINQLLEVIKGLID-LGNTVILIEHNLDVL-SSADWIIDFGPGSGKSG  169 (176)
T ss_pred             HHHHHHHHHHHHHHh-CCCEEEEEeCCHHHH-HhCCEEEEECCCCCCCC
Confidence            999999999998864 689999999999987 57999999987655433

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PLN03073 ABC transporter F family; Provisional

Probab=100.00  E-value=5.5e-38  Score=313.86  Aligned_cols=222  Identities=19%  Similarity=0.231  Sum_probs=153.4

Q ss_pred             CcccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCc---ccCCCceEEecCCccccccc
Q 022663           10 KLNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKH---MVGGRDVVQVLNRSSFHDTQ   86 (294)
Q Consensus        10 ~~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~---~~~~~g~i~~~~~~~~~~~~   86 (294)
                      +..+|+++|++++|++   +++|+|+||+|.+|+++|||||||||||||||+|+|..   .|+ .|.+.+.++.......
T Consensus       174 ~~~~I~i~nls~~y~~---~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~-~g~I~~~~Q~~~g~~~  249 (718)
T PLN03073        174 AIKDIHMENFSISVGG---RDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPK-NCQILHVEQEVVGDDT  249 (718)
T ss_pred             CceeEEEceEEEEeCC---CEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCC-CCEEEEEeccCCCCCC
Confidence            3457999999999975   46999999999999999999999999999999999853   233 5666544432110000


Q ss_pred             cc----ccCCcccccccccccccccCcc--------------cccccccHH-------HHh--hcC-CCC-cHHHHHHHH
Q 022663           87 LV----CSGDLSYLGGSWSKTVGSAGEI--------------PLQGDFSAE-------HMI--FGV-EGS-DPVRRERLI  137 (294)
Q Consensus        87 ~~----~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~-------~~~--~~~-~~~-~~~~~~~~l  137 (294)
                      ..    ........ ......+++..+.              +........       +..  +.. ..+ ...++..++
T Consensus       250 t~~~~v~~~~~~~~-~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L  328 (718)
T PLN03073        250 TALQCVLNTDIERT-QLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASIL  328 (718)
T ss_pred             CHHHHHHHhhHHHH-HHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHH
Confidence            00    00000000 0000001100000              000000000       000  111 111 133556778


Q ss_pred             HHcCCC---cccccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHH
Q 022663          138 ELLDID---LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGL  214 (294)
Q Consensus       138 ~~l~l~---~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~  214 (294)
                      ..+++.   .++++.+|||||||||+||+||+.+|++|||||||++||+.++.++.++|.++    +.|||+||||++++
T Consensus       329 ~~lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~----~~tviivsHd~~~l  404 (718)
T PLN03073        329 AGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW----PKTFIVVSHAREFL  404 (718)
T ss_pred             HHCCCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc----CCEEEEEECCHHHH
Confidence            888884   46789999999999999999999999999999999999999999999998764    78999999999999


Q ss_pred             HhhhceEEEeeCCeEE-ecccHHHHHH
Q 022663          215 ETWATHLAYIQDGELR-RAEKLAELDE  240 (294)
Q Consensus       215 ~~~~d~v~~l~~G~i~-~~g~~~~~~~  240 (294)
                      ..+||+|++|++|++. +.|+++.+..
T Consensus       405 ~~~~d~i~~l~~g~i~~~~g~~~~~~~  431 (718)
T PLN03073        405 NTVVTDILHLHGQKLVTYKGDYDTFER  431 (718)
T ss_pred             HHhCCEEEEEECCEEEEeCCCHHHHHH
Confidence            9999999999999996 6777765543

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=100.00  E-value=5.3e-37  Score=263.50  Aligned_cols=207  Identities=20%  Similarity=0.293  Sum_probs=164.6

Q ss_pred             ccEEEcceEEEcCCC---------------------CCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCC
Q 022663           12 NSIKVCGMQFSYEGN---------------------DKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGG   70 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~---------------------~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~   70 (294)
                      ++|+++||++.|.-.                     ....+|+||||++.+||.+||||+||||||||+|+|+|.++|+ 
T Consensus         2 ~~I~~~~V~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt-   80 (249)
T COG1134           2 VVIKVSNVSKKFRIYHEKSYSLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPT-   80 (249)
T ss_pred             cEEEeeceeEEEecchhhhhhHHHHHHHHhcCCCCcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCC-
Confidence            367888888876311                     1235999999999999999999999999999999999999987 


Q ss_pred             CceEEecCCcccccccccccCCcccccccccccccccCcccccccccHHHHh------hcCCCC-cHHHHHHHHHHcCCC
Q 022663           71 RDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMI------FGVEGS-DPVRRERLIELLDID  143 (294)
Q Consensus        71 ~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~-~~~~~~~~l~~l~l~  143 (294)
                      +|.+.+.|+....                +.  +    ...+.+.+|..+++      .++... -.+..+++.+.-++.
T Consensus        81 ~G~v~v~G~v~~l----------------i~--l----g~Gf~pelTGreNi~l~~~~~G~~~~ei~~~~~eIieFaELG  138 (249)
T COG1134          81 SGKVKVTGKVAPL----------------IE--L----GAGFDPELTGRENIYLRGLILGLTRKEIDEKVDEIIEFAELG  138 (249)
T ss_pred             CceEEEcceEehh----------------hh--c----ccCCCcccchHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHH
Confidence            8998887763210                00  0    01223445544433      222211 123455666665664


Q ss_pred             --cccccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceE
Q 022663          144 --LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHL  221 (294)
Q Consensus       144 --~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v  221 (294)
                        .+.++..+|-||+-|+++|.|...+|+|||+||-.+--|+.-+++-.+.+.++.++ +.|||+||||++.+.++||++
T Consensus       139 ~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~-~~tiv~VSHd~~~I~~~Cd~~  217 (249)
T COG1134         139 DFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEK-NKTIVLVSHDLGAIKQYCDRA  217 (249)
T ss_pred             HHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHc-CCEEEEEECCHHHHHHhcCee
Confidence              68899999999999999999999999999999999999999999999999998654 799999999999999999999


Q ss_pred             EEeeCCeEEecccHHHHHHhh
Q 022663          222 AYIQDGELRRAEKLAELDELR  242 (294)
Q Consensus       222 ~~l~~G~i~~~g~~~~~~~~~  242 (294)
                      ++|++|+++..|.++++.+.+
T Consensus       218 i~l~~G~i~~~G~~~~vi~~Y  238 (249)
T COG1134         218 IWLEHGQIRMEGSPEEVIPAY  238 (249)
T ss_pred             EEEeCCEEEEcCCHHHHHHHH
Confidence            999999999999999987654

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=100.00  E-value=5.5e-37  Score=295.41  Aligned_cols=202  Identities=24%  Similarity=0.304  Sum_probs=158.0

Q ss_pred             cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663           11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS   90 (294)
Q Consensus        11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~   90 (294)
                      ...++++|+++.|++  ++++++++||.|.+|+.+||+||||+|||||||+|+|...|. +|.+.+....          
T Consensus       319 ~~vl~~~~~~~~y~~--~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~-~G~v~~g~~v----------  385 (530)
T COG0488         319 KLVLEFENVSKGYDG--GRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPL-SGTVKVGETV----------  385 (530)
T ss_pred             CeeEEEeccccccCC--CceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccC-CceEEeCCce----------
Confidence            457999999999975  257999999999999999999999999999999999987776 7777653221          


Q ss_pred             CCcccccccccccccccCcccccccccHHHHhhc-CCCCcHHHHHHHHHHcCCC---cccccccCCHHHHHHHHHHHHHc
Q 022663           91 GDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFG-VEGSDPVRRERLIELLDID---LQWRMHKVSDGQRRRVQICMGLL  166 (294)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~l~---~~~~~~~LSgGqkqRv~lAraL~  166 (294)
                       .+.|+.|....         +....+..+.+.. ........+...+..|++.   ..+++..||||||.|+.||+.++
T Consensus       386 -~igyf~Q~~~~---------l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~  455 (530)
T COG0488         386 -KIGYFDQHRDE---------LDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLL  455 (530)
T ss_pred             -EEEEEEehhhh---------cCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhc
Confidence             23444433211         1122233332221 1122245567788888885   46789999999999999999999


Q ss_pred             cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEec-ccHHHHHH
Q 022663          167 HPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRA-EKLAELDE  240 (294)
Q Consensus       167 ~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~-g~~~~~~~  240 (294)
                      .+|.+||||||||+||..++..+.+.|.+    +..|||+||||.+++.++|++++++.+ ++... |.++++.+
T Consensus       456 ~~pNvLiLDEPTNhLDi~s~~aLe~aL~~----f~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y~~  525 (530)
T COG0488         456 QPPNLLLLDEPTNHLDIESLEALEEALLD----FEGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYLE  525 (530)
T ss_pred             cCCCEEEEcCCCccCCHHHHHHHHHHHHh----CCCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHHHH
Confidence            99999999999999999999998888865    578999999999999999999999998 65544 77777654

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=100.00  E-value=9.3e-37  Score=283.39  Aligned_cols=216  Identities=21%  Similarity=0.249  Sum_probs=169.6

Q ss_pred             cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663           11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS   90 (294)
Q Consensus        11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~   90 (294)
                      ...|.++++++.=++. ++++++++||++.+||.+|||||||||||||.|+|.|..+|. +|.+.++|.+..+-      
T Consensus       332 ~g~L~Ve~l~~~PPg~-~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~-~G~VRLDga~l~qW------  403 (580)
T COG4618         332 QGALSVERLTAAPPGQ-KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPT-SGSVRLDGADLRQW------  403 (580)
T ss_pred             CceeeEeeeeecCCCC-CCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccC-CCcEEecchhhhcC------
Confidence            4479999999976553 468999999999999999999999999999999999988876 99999998765321      


Q ss_pred             CCcccccccccccccccCc-ccccccccHHHHhhcCCCCcHHHHHHHHHHcC-------C--Ccccc----cccCCHHHH
Q 022663           91 GDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMIFGVEGSDPVRRERLIELLD-------I--DLQWR----MHKVSDGQR  156 (294)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-------l--~~~~~----~~~LSgGqk  156 (294)
                           ....+-+.++|.++ +.+++....+|+...-...+.+.+-++.+.-+       +  .-+..    ...||||||
T Consensus       404 -----d~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQR  478 (580)
T COG4618         404 -----DREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQR  478 (580)
T ss_pred             -----CHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHH
Confidence                 11223345666665 56666665666543333344444333333222       1  12333    357999999


Q ss_pred             HHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHH
Q 022663          157 RRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLA  236 (294)
Q Consensus       157 qRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~  236 (294)
                      ||++|||||..+|.+++||||-++||.+....+.+.|.... ..|.|+|+|||.+..+. .+|+|++|++|++...|+.+
T Consensus       479 QRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k-~rG~~vvviaHRPs~L~-~~Dkilvl~~G~~~~FG~r~  556 (580)
T COG4618         479 QRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAK-ARGGTVVVIAHRPSALA-SVDKILVLQDGRIAAFGPRE  556 (580)
T ss_pred             HHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHH-HcCCEEEEEecCHHHHh-hcceeeeecCChHHhcCCHH
Confidence            99999999999999999999999999999999999999875 56999999999999665 69999999999999999999


Q ss_pred             HHHHh
Q 022663          237 ELDEL  241 (294)
Q Consensus       237 ~~~~~  241 (294)
                      ++...
T Consensus       557 eVLa~  561 (580)
T COG4618         557 EVLAK  561 (580)
T ss_pred             HHHHH
Confidence            88653

>PRK13409 putative ATPase RIL; Provisional

Probab=100.00  E-value=2.1e-37  Score=304.36  Aligned_cols=196  Identities=20%  Similarity=0.275  Sum_probs=143.8

Q ss_pred             ceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEE-----------ecCCccccccc
Q 022663           18 GMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQ-----------VLNRSSFHDTQ   86 (294)
Q Consensus        18 ~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~-----------~~~~~~~~~~~   86 (294)
                      +++++|++  +..+|++++ .+++|+++||+||||||||||+|+|+|++.|+ .|.+.           +.|.+......
T Consensus        78 ~~~~~yg~--~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~-~G~i~~~~~~~~~~~~~~G~~l~~~~~  153 (590)
T PRK13409         78 EPVHRYGV--NGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPN-LGDYEEEPSWDEVLKRFRGTELQNYFK  153 (590)
T ss_pred             CceEEecC--CceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCC-CccccCCCcHHHHHHHhCChHHHHHHH
Confidence            48899975  246899999 99999999999999999999999999998887 78875           44433211000


Q ss_pred             ccccCCcccccccccccccccCccc-ccccccHHHHhhcCCCCcHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHH
Q 022663           87 LVCSGDLSYLGGSWSKTVGSAGEIP-LQGDFSAEHMIFGVEGSDPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICM  163 (294)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAr  163 (294)
                      ........     ......++.+.+ ++.. +..+++...  ....+..++++.+++.  .++.+.+|||||+|||+||+
T Consensus       154 ~~~~~~~~-----~~~~~q~~~~~p~~~~~-tv~e~l~~~--~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~  225 (590)
T PRK13409        154 KLYNGEIK-----VVHKPQYVDLIPKVFKG-KVRELLKKV--DERGKLDEVVERLGLENILDRDISELSGGELQRVAIAA  225 (590)
T ss_pred             HHhccCcc-----eeecccchhhhhhhhcc-hHHHHHHhh--hHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHH
Confidence            00000000     000011111111 1111 333332111  1234567788889885  58899999999999999999


Q ss_pred             HHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCC
Q 022663          164 GLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDG  227 (294)
Q Consensus       164 aL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G  227 (294)
                      ||+.+|++|||||||++||+..+..+.++|.++.+  |.|||+||||++++..+||+|++|+++
T Consensus       226 al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~--g~tvIivsHd~~~l~~~~D~v~vl~~~  287 (590)
T PRK13409        226 ALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE--GKYVLVVEHDLAVLDYLADNVHIAYGE  287 (590)
T ss_pred             HHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence            99999999999999999999999999999998854  899999999999999999999999863

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=3.8e-37  Score=258.80  Aligned_cols=210  Identities=20%  Similarity=0.267  Sum_probs=161.9

Q ss_pred             cEEEcceEEEcCCC--CCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663           13 SIKVCGMQFSYEGN--DKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS   90 (294)
Q Consensus        13 ~l~~~~ls~~y~~~--~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~   90 (294)
                      |+++.|+++.|...  ..+++|+++|++|++|+++.|+|.||||||||+++|+|.+.|+ +|.|.++|.+..........
T Consensus         1 Mi~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t-~G~I~Idg~dVtk~~~~~RA   79 (263)
T COG1101           1 MISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPT-SGQILIDGVDVTKKSVAKRA   79 (263)
T ss_pred             CcccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccC-CceEEECceecccCCHHHHh
Confidence            46778888887431  1357999999999999999999999999999999999998887 99999999875432211111


Q ss_pred             CCcccccccccccccccCcc---cccccccHHHHh-hc-CC----CC----c---HHHHHHHHHHcCCC----ccccccc
Q 022663           91 GDLSYLGGSWSKTVGSAGEI---PLQGDFSAEHMI-FG-VE----GS----D---PVRRERLIELLDID----LQWRMHK  150 (294)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~-~~----~~----~---~~~~~~~l~~l~l~----~~~~~~~  150 (294)
                      .           .+..+++.   ...+.+|.++++ .. ..    +.    .   .+.....++.+++.    ++.++.-
T Consensus        80 ~-----------~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~igl  148 (263)
T COG1101          80 N-----------LLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGL  148 (263)
T ss_pred             h-----------HHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhh
Confidence            1           11122222   234566665543 11 11    11    1   11223344555543    5678899


Q ss_pred             CCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEE
Q 022663          151 VSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELR  230 (294)
Q Consensus       151 LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~  230 (294)
                      |||||||-++|+.|.++.|+||+|||-|++|||.....+++.-.++.++.+.|.+||||+++.+..|.+|.++|++|+|+
T Consensus       149 LSGGQRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~Iv  228 (263)
T COG1101         149 LSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIV  228 (263)
T ss_pred             ccchHHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             eccc
Q 022663          231 RAEK  234 (294)
Q Consensus       231 ~~g~  234 (294)
                      .+-.
T Consensus       229 lDv~  232 (263)
T COG1101         229 LDVT  232 (263)
T ss_pred             EEcc
Confidence            8644

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=100.00  E-value=7.5e-37  Score=326.58  Aligned_cols=210  Identities=20%  Similarity=0.275  Sum_probs=166.2

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      .|+++||+++|+.. .+++|+||||+|++||.+||+|+||||||||+++|+|++.  .+|.|.++|.+...-.       
T Consensus      1217 ~I~f~nVs~~Y~~~-~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~--~~G~I~IdG~di~~i~------- 1286 (1490)
T TIGR01271      1217 QMDVQGLTAKYTEA-GRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS--TEGEIQIDGVSWNSVT------- 1286 (1490)
T ss_pred             eEEEEEEEEEeCCC-CcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC--CCcEEEECCEEcccCC-------
Confidence            69999999999742 3579999999999999999999999999999999999875  3899999997653211       


Q ss_pred             cccccccccccccccCcc-cccccccHHHHhhcCCCCcHHHHHHHHHHcCCC---------ccc----ccccCCHHHHHH
Q 022663           93 LSYLGGSWSKTVGSAGEI-PLQGDFSAEHMIFGVEGSDPVRRERLIELLDID---------LQW----RMHKVSDGQRRR  158 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~---------~~~----~~~~LSgGqkqR  158 (294)
                          ...++..+++++|. .++.. |..+++........+...++++..++.         ++.    ....||||||||
T Consensus      1287 ----~~~lR~~is~IpQdp~LF~G-TIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQr 1361 (1490)
T TIGR01271      1287 ----LQTWRKAFGVIPQKVFIFSG-TFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQL 1361 (1490)
T ss_pred             ----HHHHHhceEEEeCCCccCcc-CHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHH
Confidence                11234445555553 34443 444444222223455566677766542         222    234799999999


Q ss_pred             HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663          159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL  238 (294)
Q Consensus       159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~  238 (294)
                      ++|||||+++|+||||||||++||+.+...+.+.|++..  .++|||+|+|+++.+.. ||+|++|++|+|++.|++.++
T Consensus      1362 L~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~--~~~TvI~IaHRl~ti~~-~DrIlvL~~G~ivE~g~p~~L 1438 (1490)
T TIGR01271      1362 MCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF--SNCTVILSEHRVEALLE-CQQFLVIEGSSVKQYDSIQKL 1438 (1490)
T ss_pred             HHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHHHHh-CCEEEEEECCEEEEeCCHHHH
Confidence            999999999999999999999999999999999998754  37999999999998875 999999999999999999998


Q ss_pred             HH
Q 022663          239 DE  240 (294)
Q Consensus       239 ~~  240 (294)
                      .+
T Consensus      1439 l~ 1440 (1490)
T TIGR01271      1439 LN 1440 (1490)
T ss_pred             Hc
Confidence            75

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=100.00  E-value=1.6e-36  Score=302.42  Aligned_cols=185  Identities=20%  Similarity=0.317  Sum_probs=140.8

Q ss_pred             ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663           12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG   91 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~   91 (294)
                      .+|+++||+++|++  ++++|+|+||+|++||+++|+||||||||||+|+|+|+++++ +|.+.+++.           .
T Consensus       450 ~~i~~~nv~~~~~~--~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~-~G~i~~~~~-----------~  515 (659)
T TIGR00954       450 NGIKFENIPLVTPN--GDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVY-GGRLTKPAK-----------G  515 (659)
T ss_pred             CeEEEEeeEEECCC--CCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CCeEeecCC-----------C
Confidence            46999999999964  246999999999999999999999999999999999998765 677765321           1


Q ss_pred             CcccccccccccccccCcccccccccH-HHHhhcC-------CCCcHHHHHHHHHHcCCC--ccc---------ccccCC
Q 022663           92 DLSYLGGSWSKTVGSAGEIPLQGDFSA-EHMIFGV-------EGSDPVRRERLIELLDID--LQW---------RMHKVS  152 (294)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-------~~~~~~~~~~~l~~l~l~--~~~---------~~~~LS  152 (294)
                      .+.+++|.          ..++.. +. +++.++.       .....++..++++.+++.  .++         ...+||
T Consensus       516 ~i~~v~Q~----------~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LS  584 (659)
T TIGR00954       516 KLFYVPQR----------PYMTLG-TLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLS  584 (659)
T ss_pred             cEEEECCC----------CCCCCc-CHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCC
Confidence            22333221          112222 33 3333321       112234556777777763  222         236899


Q ss_pred             HHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeC
Q 022663          153 DGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQD  226 (294)
Q Consensus       153 gGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~  226 (294)
                      ||||||++|||||+++|++|||||||++||+.++..+.+.+.+    .|.|+|+|||+++.+ ++||++++|+.
T Consensus       585 gGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~----~~~tvI~isH~~~~~-~~~d~il~l~~  653 (659)
T TIGR00954       585 GGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE----FGITLFSVSHRKSLW-KYHEYLLYMDG  653 (659)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH----cCCEEEEEeCchHHH-HhCCEEEEEeC
Confidence            9999999999999999999999999999999999999988764    389999999999986 57999999973

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=100.00  E-value=1.7e-36  Score=300.55  Aligned_cols=198  Identities=19%  Similarity=0.250  Sum_probs=155.9

Q ss_pred             CCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccC--CCceEEecCCcccccccccccCCccccccccccccc
Q 022663           28 KPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVG--GRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVG  105 (294)
Q Consensus        28 ~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~--~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (294)
                      ++++|+|+|++|++||+++|+|||||||||||++|+|...+.  ..|.+.++|.+...              ..+++.++
T Consensus        37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~--------------~~~~~~i~  102 (617)
T TIGR00955        37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDA--------------KEMRAISA  102 (617)
T ss_pred             ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCH--------------HHHhhhce
Confidence            367999999999999999999999999999999999987653  36888888864311              01122344


Q ss_pred             ccCc-ccccccccHHHHh-hcC--C--C-Cc----HHHHHHHHHHcCCC--cccccc------cCCHHHHHHHHHHHHHc
Q 022663          106 SAGE-IPLQGDFSAEHMI-FGV--E--G-SD----PVRRERLIELLDID--LQWRMH------KVSDGQRRRVQICMGLL  166 (294)
Q Consensus       106 ~~~~-~~~~~~~~~~~~~-~~~--~--~-~~----~~~~~~~l~~l~l~--~~~~~~------~LSgGqkqRv~lAraL~  166 (294)
                      ++.+ ..+++.+|..+.+ +..  .  . ..    .++++++++.+++.  .+..++      .|||||||||+||++|+
T Consensus       103 yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~  182 (617)
T TIGR00955       103 YVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELL  182 (617)
T ss_pred             eeccccccCccCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHH
Confidence            4444 2345555655433 221  1  1 11    22457788888884  355554      59999999999999999


Q ss_pred             cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChh-HHHhhhceEEEeeCCeEEecccHHHHHH
Q 022663          167 HPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFD-GLETWATHLAYIQDGELRRAEKLAELDE  240 (294)
Q Consensus       167 ~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~~  240 (294)
                      .+|++|+|||||+|||+.++..+++.|+++++ .|+|||+++|++. .+.++||++++|++|++++.|+++++.+
T Consensus       183 ~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~-~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~  256 (617)
T TIGR00955       183 TDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQ-KGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVP  256 (617)
T ss_pred             cCCCEEEeeCCCcchhHHHHHHHHHHHHHHHh-CCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHH
Confidence            99999999999999999999999999999875 4999999999995 7888999999999999999999987744

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=100.00  E-value=1.7e-36  Score=321.80  Aligned_cols=207  Identities=22%  Similarity=0.271  Sum_probs=160.8

Q ss_pred             cEEEcceEEEcCCC-CCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCccc--CCCceEEecCCcccccccccc
Q 022663           13 SIKVCGMQFSYEGN-DKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMV--GGRDVVQVLNRSSFHDTQLVC   89 (294)
Q Consensus        13 ~l~~~~ls~~y~~~-~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~--~~~g~i~~~~~~~~~~~~~~~   89 (294)
                      +|+++||++.|+.. +.+.+|+|||++|++||+++|+|||||||||||++|+|...+  ..+|.+.++|.+...      
T Consensus       759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~------  832 (1394)
T TIGR00956       759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS------  832 (1394)
T ss_pred             eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh------
Confidence            58999999999521 135799999999999999999999999999999999998762  236899988865311      


Q ss_pred             cCCcccccccccccccccCc-ccccccccHHHHh-hc--CC---CCc----HHHHHHHHHHcCCC--cccccc----cCC
Q 022663           90 SGDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-FG--VE---GSD----PVRRERLIELLDID--LQWRMH----KVS  152 (294)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~--~~---~~~----~~~~~~~l~~l~l~--~~~~~~----~LS  152 (294)
                               .+++.++++.+ ..+.+..+..+.+ +.  ..   ...    .++++++++.+++.  .++.++    .||
T Consensus       833 ---------~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LS  903 (1394)
T TIGR00956       833 ---------SFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLN  903 (1394)
T ss_pred             ---------hhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCC
Confidence                     01222333333 2234455554433 21  11   111    13456788888885  466665    799


Q ss_pred             HHHHHHHHHHHHHccCCC-EEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhH-HHhhhceEEEeeCC-eE
Q 022663          153 DGQRRRVQICMGLLHPFK-VLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDG-LETWATHLAYIQDG-EL  229 (294)
Q Consensus       153 gGqkqRv~lAraL~~~p~-iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~-~~~~~d~v~~l~~G-~i  229 (294)
                      |||||||+||++|+.+|+ ||||||||+|||+.++..+++.|+++++ .|.|||+++|+++. +.+.+|++++|++| ++
T Consensus       904 gGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~-~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~i  982 (1394)
T TIGR00956       904 VEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLAD-HGQAILCTIHQPSAILFEEFDRLLLLQKGGQT  982 (1394)
T ss_pred             HHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHhcCEEEEEcCCCEE
Confidence            999999999999999997 9999999999999999999999999865 58999999999986 45789999999997 99


Q ss_pred             EecccH
Q 022663          230 RRAEKL  235 (294)
Q Consensus       230 ~~~g~~  235 (294)
                      ++.|++
T Consensus       983 v~~G~~  988 (1394)
T TIGR00956       983 VYFGDL  988 (1394)
T ss_pred             EEECCc
Confidence            999886

>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]

Probab=100.00  E-value=7.8e-37  Score=282.19  Aligned_cols=212  Identities=21%  Similarity=0.322  Sum_probs=167.9

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      -|+++||+|.|..  ++++|+||||++.+|+.++|+||||+||||++|++....... +|.|.++|++...-..      
T Consensus       537 ~i~fsnvtF~Y~p--~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~-sGsI~iDgqdIrnvt~------  607 (790)
T KOG0056|consen  537 KIEFSNVTFAYDP--GKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVN-SGSITIDGQDIRNVTQ------  607 (790)
T ss_pred             eEEEEEeEEecCC--CCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhcc-CceEEEcCchHHHHHH------
Confidence            5999999999975  478999999999999999999999999999999999987765 8999999987643211      


Q ss_pred             cccccccccccccccCc-ccccccccHHHHhhcCCCCcHHHHHHHHHHcC-------CC------cccccccCCHHHHHH
Q 022663           93 LSYLGGSWSKTVGSAGE-IPLQGDFSAEHMIFGVEGSDPVRRERLIELLD-------ID------LQWRMHKVSDGQRRR  158 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-------l~------~~~~~~~LSgGqkqR  158 (294)
                           ...+..++.+++ ..++++.-..++.++......+.+.++.+..+       ..      ...+.-.||||||||
T Consensus       608 -----~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQR  682 (790)
T KOG0056|consen  608 -----SSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQR  682 (790)
T ss_pred             -----HHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhh
Confidence                 123445555554 23444443444445444333333333333322       21      123445799999999


Q ss_pred             HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663          159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL  238 (294)
Q Consensus       159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~  238 (294)
                      |+|||++++.|.+++|||.||+||..+.+.|...|.++|+  +.|-|+|.|.+..+-+ ||.|+++++|+|++.|..+++
T Consensus       683 VAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca--~RTtIVvAHRLSTivn-AD~ILvi~~G~IvErG~HeeL  759 (790)
T KOG0056|consen  683 VAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA--NRTTIVVAHRLSTIVN-ADLILVISNGRIVERGRHEEL  759 (790)
T ss_pred             HHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc--CCceEEEeeeehheec-ccEEEEEeCCeEeecCcHHHH
Confidence            9999999999999999999999999999999999999985  6799999999998875 999999999999999999998


Q ss_pred             HHh
Q 022663          239 DEL  241 (294)
Q Consensus       239 ~~~  241 (294)
                      ...
T Consensus       760 l~r  762 (790)
T KOG0056|consen  760 LKR  762 (790)
T ss_pred             Hhc
Confidence            765

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1e-35  Score=252.70  Aligned_cols=214  Identities=21%  Similarity=0.223  Sum_probs=160.7

Q ss_pred             ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCc--ccCCCceEEecCCcccccccccc
Q 022663           12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKH--MVGGRDVVQVLNRSSFHDTQLVC   89 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~--~~~~~g~i~~~~~~~~~~~~~~~   89 (294)
                      .+|+++||+.+-.+  ++.||++|||+|++||+.+|+||||||||||.++|+|.-  .+. .|.|.++|.+...-.... 
T Consensus         2 ~~L~I~dLhv~v~~--~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt-~G~I~~~GedI~~l~~~E-   77 (251)
T COG0396           2 MMLEIKDLHVEVEG--KKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVT-EGEILFDGEDILELSPDE-   77 (251)
T ss_pred             ceeEEeeeEEEecC--chhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEe-cceEEECCcccccCCHhH-
Confidence            47999999999875  148999999999999999999999999999999999953  343 899999998754321100 


Q ss_pred             cCCcccccccccccccccCc-ccccccccHHHHhh-cC---CC------CcHHHHHHHHHHcCCC---cccccc-cCCHH
Q 022663           90 SGDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMIF-GV---EG------SDPVRRERLIELLDID---LQWRMH-KVSDG  154 (294)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~---~~------~~~~~~~~~l~~l~l~---~~~~~~-~LSgG  154 (294)
                         .      .+..+...+| ++-.+..+..+++. ..   ..      .......+.++.++++   +++.+. .+|||
T Consensus        78 ---R------Ar~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGG  148 (251)
T COG0396          78 ---R------ARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGG  148 (251)
T ss_pred             ---H------HhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcc
Confidence               0      0011111122 22223333333221 00   00      0123445677888886   467765 59999


Q ss_pred             HHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhh-ceEEEeeCCeEEecc
Q 022663          155 QRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWA-THLAYIQDGELRRAE  233 (294)
Q Consensus       155 qkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~-d~v~~l~~G~i~~~g  233 (294)
                      ||+|..|+.+++.+|++.|||||-||||..+-+.+.+.+..+.. .|.++++|||.-+.+..+- |+|.+|-+|+|+..|
T Consensus       149 EkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~-~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG  227 (251)
T COG0396         149 EKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALRE-EGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSG  227 (251)
T ss_pred             hHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhc-CCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecC
Confidence            99999999999999999999999999999999999999998864 5999999999998777553 999999999999999


Q ss_pred             cHHHHHH
Q 022663          234 KLAELDE  240 (294)
Q Consensus       234 ~~~~~~~  240 (294)
                      .+ ++..
T Consensus       228 ~~-el~~  233 (251)
T COG0396         228 DP-ELAE  233 (251)
T ss_pred             CH-HHHH
Confidence            99 5543

>PLN03232 ABC transporter C family member; Provisional

Probab=100.00  E-value=1e-35  Score=318.23  Aligned_cols=202  Identities=24%  Similarity=0.388  Sum_probs=154.3

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      .|+++|++|+|+...++++|+|+||+|++|+.++|+||+|||||||+++|.|.+.|..++...+             .+.
T Consensus       614 ~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~-------------~~~  680 (1495)
T PLN03232        614 AISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVI-------------RGS  680 (1495)
T ss_pred             cEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEe-------------cCc
Confidence            5999999999974223579999999999999999999999999999999999988863333321             122


Q ss_pred             cccccccccccccccCcccccccccHHHHhhcCCCCcHHHHHHHHHHcCCC-------------cccccccCCHHHHHHH
Q 022663           93 LSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDID-------------LQWRMHKVSDGQRRRV  159 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------------~~~~~~~LSgGqkqRv  159 (294)
                      +.|.+|.          +.++.....+|+.++. ..+.++..++++..++.             ...+...||||||||+
T Consensus       681 Iayv~Q~----------p~Lf~gTIreNI~fg~-~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRI  749 (1495)
T PLN03232        681 VAYVPQV----------SWIFNATVRENILFGS-DFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRV  749 (1495)
T ss_pred             EEEEcCc----------cccccccHHHHhhcCC-ccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHH
Confidence            3333322          2233333345555554 34555666666665541             1233457999999999


Q ss_pred             HHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHH-HHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663          160 QICMGLLHPFKVLLLDEITVDLDVVARMDLLDF-FKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL  238 (294)
Q Consensus       160 ~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~-l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~  238 (294)
                      +||||+.++|+|||||||||+||+.+.+.+++. +....  .++|+|+|||++..+. .||+|++|++|++++.|+.+++
T Consensus       750 aLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l--~~kT~IlvTH~~~~l~-~aD~Ii~L~~G~i~~~Gt~~eL  826 (1495)
T PLN03232        750 SMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDEL--KGKTRVLVTNQLHFLP-LMDRIILVSEGMIKEEGTFAEL  826 (1495)
T ss_pred             HHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhh--cCCEEEEEECChhhHH-hCCEEEEEeCCEEEEecCHHHH
Confidence            999999999999999999999999999888765 44332  4799999999999765 6999999999999999999988


Q ss_pred             HHh
Q 022663          239 DEL  241 (294)
Q Consensus       239 ~~~  241 (294)
                      .+.
T Consensus       827 ~~~  829 (1495)
T PLN03232        827 SKS  829 (1495)
T ss_pred             Hhc
Confidence            653

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=100.00  E-value=1.4e-35  Score=317.52  Aligned_cols=201  Identities=19%  Similarity=0.293  Sum_probs=154.5

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      .|+++|++++|++. .+++|+|+||+|++|++++|+||||||||||+++|+|++.|. .|.+.++|.             
T Consensus       636 ~i~~~~~~~~~~~~-~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~-~G~i~~~g~-------------  700 (1522)
T TIGR00957       636 SITVHNATFTWARD-LPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV-EGHVHMKGS-------------  700 (1522)
T ss_pred             cEEEEEeEEEcCCC-CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccC-CcEEEECCE-------------
Confidence            69999999999642 247999999999999999999999999999999999998886 788876542             


Q ss_pred             cccccccccccccccCcccccccccHHHHhhcCCCCcHHHHHHHHHHcCC------C-------cccccccCCHHHHHHH
Q 022663           93 LSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDI------D-------LQWRMHKVSDGQRRRV  159 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l------~-------~~~~~~~LSgGqkqRv  159 (294)
                      +.|.+|.          ..++.....+++.++.. .+.++.+++++..++      .       .+.+..+||||||||+
T Consensus       701 i~yv~Q~----------~~l~~~Ti~eNI~~g~~-~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRi  769 (1522)
T TIGR00957       701 VAYVPQQ----------AWIQNDSLRENILFGKA-LNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRV  769 (1522)
T ss_pred             EEEEcCC----------ccccCCcHHHHhhcCCc-cCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHH
Confidence            2333322          11222222334444322 233333333333221      1       2456778999999999


Q ss_pred             HHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHH-HhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663          160 QICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDEC-EQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL  238 (294)
Q Consensus       160 ~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~-~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~  238 (294)
                      +||||++.+|+++||||||++||+.+.+.+++.+.+.. ...++|+|+|||+++.+.. ||+|++|++|+++..|+++++
T Consensus       770 aLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~-~D~ii~l~~G~i~~~g~~~~l  848 (1522)
T TIGR00957       770 SLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQ-VDVIIVMSGGKISEMGSYQEL  848 (1522)
T ss_pred             HHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhh-CCEEEEecCCeEEeeCCHHHH
Confidence            99999999999999999999999999999999886531 1247899999999998875 999999999999999999888


Q ss_pred             HH
Q 022663          239 DE  240 (294)
Q Consensus       239 ~~  240 (294)
                      .+
T Consensus       849 ~~  850 (1522)
T TIGR00957       849 LQ  850 (1522)
T ss_pred             Hh
Confidence            65

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>PLN03130 ABC transporter C family member; Provisional

Probab=100.00  E-value=2.1e-35  Score=316.63  Aligned_cols=201  Identities=24%  Similarity=0.391  Sum_probs=155.5

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCC-ceEEecCCcccccccccccC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGR-DVVQVLNRSSFHDTQLVCSG   91 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~-g~i~~~~~~~~~~~~~~~~~   91 (294)
                      .|+++|++|+|+...++++|+|+||+|++|+.++|+||+|||||||+++|.|.+.+. + |.+.+.+             
T Consensus       614 ~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~-~GG~I~l~~-------------  679 (1622)
T PLN03130        614 AISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPR-SDASVVIRG-------------  679 (1622)
T ss_pred             ceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccC-CCceEEEcC-------------
Confidence            699999999997422357999999999999999999999999999999999998886 5 6765322             


Q ss_pred             CcccccccccccccccCcccccccccHHHHhhcCCCCcHHHHHHHHHHcCCC-------------cccccccCCHHHHHH
Q 022663           92 DLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDID-------------LQWRMHKVSDGQRRR  158 (294)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------------~~~~~~~LSgGqkqR  158 (294)
                      .+.|.+|.          +-++.....+|+.++.. .+.++..++++..++.             ...+...||||||||
T Consensus       680 ~Iayv~Q~----------p~LfngTIreNI~fg~~-~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQR  748 (1622)
T PLN03130        680 TVAYVPQV----------SWIFNATVRDNILFGSP-FDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQR  748 (1622)
T ss_pred             eEEEEcCc----------cccCCCCHHHHHhCCCc-ccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHH
Confidence            23333322          22333333445555533 3555666666665541             123445799999999


Q ss_pred             HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHH-HHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHH
Q 022663          159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLD-FFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAE  237 (294)
Q Consensus       159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~-~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~  237 (294)
                      ++||||+..+|+|||||||||+||+...+.+++ .+....  .++|+|+|||++..+. .||+|++|++|++++.|+.++
T Consensus       749 IaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l--~~kTvIlVTH~l~~l~-~aD~Ii~L~~G~i~e~Gt~~e  825 (1622)
T PLN03130        749 VSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL--RGKTRVLVTNQLHFLS-QVDRIILVHEGMIKEEGTYEE  825 (1622)
T ss_pred             HHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHh--cCCEEEEEECCHhHHH-hCCEEEEEeCCEEEEeCCHHH
Confidence            999999999999999999999999999888764 455443  4799999999998765 599999999999999999998


Q ss_pred             HHHh
Q 022663          238 LDEL  241 (294)
Q Consensus       238 ~~~~  241 (294)
                      +.+.
T Consensus       826 L~~~  829 (1622)
T PLN03130        826 LSNN  829 (1622)
T ss_pred             HHhc
Confidence            8653

>PLN03140 ABC transporter G family member; Provisional

Probab=100.00  E-value=2.6e-35  Score=312.34  Aligned_cols=208  Identities=18%  Similarity=0.294  Sum_probs=158.7

Q ss_pred             cEEEcceEEEcCCC----------CCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCccc-CCCceEEecCCcc
Q 022663           13 SIKVCGMQFSYEGN----------DKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMV-GGRDVVQVLNRSS   81 (294)
Q Consensus        13 ~l~~~~ls~~y~~~----------~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~-~~~g~i~~~~~~~   81 (294)
                      .++++||++..+..          +++.+|+|||++|++|++++|+|||||||||||++|+|...+ ..+|.+.++|.+.
T Consensus       867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~  946 (1470)
T PLN03140        867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK  946 (1470)
T ss_pred             eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence            58999999987421          124699999999999999999999999999999999997543 1267888877643


Q ss_pred             cccccccccCCcccccccccccccccCc-ccccccccHHHHh-hc----CC-CCc----HHHHHHHHHHcCCC--ccccc
Q 022663           82 FHDTQLVCSGDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-FG----VE-GSD----PVRRERLIELLDID--LQWRM  148 (294)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~----~~-~~~----~~~~~~~l~~l~l~--~~~~~  148 (294)
                      ...              .+++.++++.+ ..+.+.+++.+.+ +.    .. ...    ...++++++.+++.  .++.+
T Consensus       947 ~~~--------------~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~v 1012 (1470)
T PLN03140        947 KQE--------------TFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIV 1012 (1470)
T ss_pred             ChH--------------HhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCcc
Confidence            110              01122333333 2334455655433 21    11 111    12356788888885  35554


Q ss_pred             -----ccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChh-HHHhhhceEE
Q 022663          149 -----HKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFD-GLETWATHLA  222 (294)
Q Consensus       149 -----~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~-~~~~~~d~v~  222 (294)
                           ..|||||||||+||++|+.+|++|||||||+|||+.++..+++.|+++++ .|.|||+++|+++ .+...||+++
T Consensus      1013 g~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~-~g~tVI~t~Hq~~~~i~~~~D~vl 1091 (1470)
T PLN03140       1013 GLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELL 1091 (1470)
T ss_pred             CCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCHHHHHhCCEEE
Confidence                 58999999999999999999999999999999999999999999999875 4899999999998 4778999999


Q ss_pred             EeeC-CeEEecccH
Q 022663          223 YIQD-GELRRAEKL  235 (294)
Q Consensus       223 ~l~~-G~i~~~g~~  235 (294)
                      +|++ |++++.|++
T Consensus      1092 lL~~gG~~v~~G~~ 1105 (1470)
T PLN03140       1092 LMKRGGQVIYSGPL 1105 (1470)
T ss_pred             EEcCCCEEEEECCc
Confidence            9996 899999885

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=100.00  E-value=4.2e-35  Score=256.60  Aligned_cols=98  Identities=19%  Similarity=0.272  Sum_probs=88.6

Q ss_pred             HHHHHHcCCC---cccccccCCHHHHHHHHHHHHHccCC--CEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEe
Q 022663          134 ERLIELLDID---LQWRMHKVSDGQRRRVQICMGLLHPF--KVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYAT  208 (294)
Q Consensus       134 ~~~l~~l~l~---~~~~~~~LSgGqkqRv~lAraL~~~p--~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivs  208 (294)
                      .++++.+++.   .++++.+|||||+|||+|||||+.+|  ++|||||||+|||+..+..+.++|.++++ .|.|||+||
T Consensus       118 ~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~-~g~tii~it  196 (226)
T cd03270         118 LGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRD-LGNTVLVVE  196 (226)
T ss_pred             HHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHh-CCCEEEEEE
Confidence            4577888874   47789999999999999999999998  59999999999999999999999998864 589999999


Q ss_pred             CChhHHHhhhceEEEe------eCCeEEecc
Q 022663          209 HIFDGLETWATHLAYI------QDGELRRAE  233 (294)
Q Consensus       209 Hd~~~~~~~~d~v~~l------~~G~i~~~g  233 (294)
                      ||++++ .+||++++|      ++|+|+++|
T Consensus       197 H~~~~~-~~~d~i~~l~~~~~~~~G~iv~~g  226 (226)
T cd03270         197 HDEDTI-RAADHVIDIGPGAGVHGGEIVAQG  226 (226)
T ss_pred             eCHHHH-HhCCEEEEeCCCccccCCEEEecC
Confidence            999987 589999999      999998865

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.6e-35  Score=244.31  Aligned_cols=186  Identities=22%  Similarity=0.284  Sum_probs=146.3

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      +++.+||+..-+.   .++|.++||++.+||++-|.||||||||||||+|+|+..|+ +|.+.+.+........      
T Consensus         2 ~L~a~~L~~~R~e---~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~-~G~v~~~~~~i~~~~~------   71 (209)
T COG4133           2 MLEAENLSCERGE---RTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPD-AGEVYWQGEPIQNVRE------   71 (209)
T ss_pred             cchhhhhhhccCc---ceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCC-CCeEEecCCCCccchh------
Confidence            5788999988765   68999999999999999999999999999999999999987 9999988765422111      


Q ss_pred             cccccccccccccccCc-ccccccccHHHHh-hc--CCC-CcHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHHH
Q 022663           93 LSYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-FG--VEG-SDPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMGL  165 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~--~~~-~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL  165 (294)
                            .+.....|.+. ..+...+|+.|++ |.  ... .+...+.++++.+++.  .|.++.+||-|||+||+|||.+
T Consensus        72 ------~~~~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~  145 (209)
T COG4133          72 ------SYHQALLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLW  145 (209)
T ss_pred             ------hHHHHHHHhhccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHH
Confidence                  11112222222 3344556665543 22  112 2345677889999985  6889999999999999999999


Q ss_pred             ccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHH
Q 022663          166 LHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLE  215 (294)
Q Consensus       166 ~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~  215 (294)
                      ++.++++||||||++||...+..+-.++...+. .|..||.+||..--+.
T Consensus       146 ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~-~GGiVllttHq~l~~~  194 (209)
T COG4133         146 LSPAPLWILDEPFTALDKEGVALLTALMAAHAA-QGGIVLLTTHQPLPIA  194 (209)
T ss_pred             cCCCCceeecCcccccCHHHHHHHHHHHHHHhc-CCCEEEEecCCccCCC
Confidence            999999999999999999999999999988875 4888999999976543

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=100.00  E-value=8e-35  Score=309.02  Aligned_cols=200  Identities=18%  Similarity=0.178  Sum_probs=153.0

Q ss_pred             CCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcc---cCCCceEEecCCcccccccccccCCccccccccccccc
Q 022663           29 PPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHM---VGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVG  105 (294)
Q Consensus        29 ~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~---~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (294)
                      +++|+|+|+++++||+++|+||||||||||||+|+|...   ...+|.+.++|.+.....            ...+..++
T Consensus        74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~------------~~~r~~i~  141 (1394)
T TIGR00956        74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK------------KHYRGDVV  141 (1394)
T ss_pred             ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHH------------hhcCceeE
Confidence            469999999999999999999999999999999999752   223899999886532100            00111233


Q ss_pred             ccCc-ccccccccHHHHh-hcC--C-------CCc-HH---H-HHHHHHHcCCC--ccc-----ccccCCHHHHHHHHHH
Q 022663          106 SAGE-IPLQGDFSAEHMI-FGV--E-------GSD-PV---R-RERLIELLDID--LQW-----RMHKVSDGQRRRVQIC  162 (294)
Q Consensus       106 ~~~~-~~~~~~~~~~~~~-~~~--~-------~~~-~~---~-~~~~l~~l~l~--~~~-----~~~~LSgGqkqRv~lA  162 (294)
                      ++.+ ..+++.+++.+.+ +..  .       ... .+   + .+.+++.+++.  .++     .+..|||||||||+||
T Consensus       142 yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA  221 (1394)
T TIGR00956       142 YNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIA  221 (1394)
T ss_pred             EeccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHH
Confidence            3333 2344555654432 211  0       111 11   1 24578888885  233     4568999999999999


Q ss_pred             HHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCh-hHHHhhhceEEEeeCCeEEecccHHHHHH
Q 022663          163 MGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIF-DGLETWATHLAYIQDGELRRAEKLAELDE  240 (294)
Q Consensus       163 raL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  240 (294)
                      ++|+.+|++|+|||||+|||+.++..+.+.|++++++.|.|||+++|++ +.+.+++|+|++|++|+++..|+++++.+
T Consensus       222 ~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~  300 (1394)
T TIGR00956       222 EASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQ  300 (1394)
T ss_pred             HHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHH
Confidence            9999999999999999999999999999999999876689999999996 78899999999999999999999887643

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=100.00  E-value=2.5e-34  Score=307.23  Aligned_cols=184  Identities=21%  Similarity=0.330  Sum_probs=139.9

Q ss_pred             CCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcccccccccccccccC
Q 022663           29 PPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAG  108 (294)
Q Consensus        29 ~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (294)
                      +++|+|+||+|++|++++|+|||||||||||++|+|++.|. .|.+.++|.             +.|.+|.         
T Consensus       439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~-~G~i~~~g~-------------iayv~Q~---------  495 (1490)
T TIGR01271       439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPS-EGKIKHSGR-------------ISFSPQT---------  495 (1490)
T ss_pred             CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEECCE-------------EEEEeCC---------
Confidence            35899999999999999999999999999999999998886 788876552             2333221         


Q ss_pred             cccccccccHHHHhhcCCCCcHHHHHHHHHHcCC---------C----cccccccCCHHHHHHHHHHHHHccCCCEEEee
Q 022663          109 EIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDI---------D----LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLD  175 (294)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l---------~----~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLD  175 (294)
                       ..+++....+++.++.. .+.++..++++..++         .    ...+...|||||||||+||||++.+|+++|||
T Consensus       496 -~~l~~~Ti~eNI~~g~~-~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLD  573 (1490)
T TIGR01271       496 -SWIMPGTIKDNIIFGLS-YDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLD  573 (1490)
T ss_pred             -CccCCccHHHHHHhccc-cchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEe
Confidence             11222222334444432 122222222222111         1    23456799999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHH-HHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHH
Q 022663          176 EITVDLDVVARMDLLDF-FKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDE  240 (294)
Q Consensus       176 EPt~gLD~~~~~~l~~~-l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  240 (294)
                      |||++||+..+..+++. +..+.  .++|+|+|||+++.+.. ||+|++|++|+++..|+++++..
T Consensus       574 ep~saLD~~~~~~i~~~~l~~~~--~~~tvilvtH~~~~~~~-ad~ii~l~~g~i~~~g~~~~l~~  636 (1490)
T TIGR01271       574 SPFTHLDVVTEKEIFESCLCKLM--SNKTRILVTSKLEHLKK-ADKILLLHEGVCYFYGTFSELQA  636 (1490)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHh--cCCeEEEEeCChHHHHh-CCEEEEEECCEEEEEcCHHHHHh
Confidence            99999999999999985 55553  38999999999998875 99999999999999999988764

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.1e-34  Score=264.48  Aligned_cols=213  Identities=22%  Similarity=0.318  Sum_probs=170.0

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      .+.+.+++|.|..  .+++|+++||++++|+.++++||+|+||||++++|...+.+. +|.|.++|++...-..      
T Consensus       262 ~v~F~~V~F~y~~--~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~-sG~I~id~qdir~vtq------  332 (497)
T COG5265         262 AVAFINVSFAYDP--RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVN-SGSITIDGQDIRDVTQ------  332 (497)
T ss_pred             eEEEEEEEeeccc--cchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCc-CceEEEcchhHHHhHH------
Confidence            3789999999976  478999999999999999999999999999999999988876 9999999987643111      


Q ss_pred             cccccccccccccccCc-ccccccccHHHHhhcCCCCcHHHHHHHHHHcCC---------Ccc----cccccCCHHHHHH
Q 022663           93 LSYLGGSWSKTVGSAGE-IPLQGDFSAEHMIFGVEGSDPVRRERLIELLDI---------DLQ----WRMHKVSDGQRRR  158 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l---------~~~----~~~~~LSgGqkqR  158 (294)
                           +..++.++.+++ ..++.+....++.++......+.+..+.+...+         ..+    .+.-.||||||||
T Consensus       333 -----~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqr  407 (497)
T COG5265         333 -----QSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQR  407 (497)
T ss_pred             -----HHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHH
Confidence                 123445666655 455655555566665544333333333333222         122    3344699999999


Q ss_pred             HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663          159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL  238 (294)
Q Consensus       159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~  238 (294)
                      |+|||+++.+|+||+|||.||+||..+.+++...|++..  .|.|-++|.|.+..+.. ||.|++|++|+|++.|..+++
T Consensus       408 vaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~--~~rttlviahrlsti~~-adeiivl~~g~i~erg~h~~l  484 (497)
T COG5265         408 VAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS--AGRTTLVIAHRLSTIID-ADEIIVLDNGRIVERGTHEEL  484 (497)
T ss_pred             HHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh--CCCeEEEEeehhhhccC-CceEEEeeCCEEEecCcHHHH
Confidence            999999999999999999999999999999999999875  48899999999998886 999999999999999999998


Q ss_pred             HHhh
Q 022663          239 DELR  242 (294)
Q Consensus       239 ~~~~  242 (294)
                      +...
T Consensus       485 l~~~  488 (497)
T COG5265         485 LAAG  488 (497)
T ss_pred             HHcC
Confidence            8753

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=1.2e-34  Score=231.11  Aligned_cols=195  Identities=23%  Similarity=0.273  Sum_probs=151.8

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccC--CCceEEecCCccccccccccc
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVG--GRDVVQVLNRSSFHDTQLVCS   90 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~--~~g~i~~~~~~~~~~~~~~~~   90 (294)
                      ++.++||+.+.++   ..+|-++||+|.+|||+.|+||||||||||+..+.|.+.++  -+|.+.+++++...       
T Consensus         2 ~l~l~nvsl~l~g---~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~-------   71 (213)
T COG4136           2 MLCLKNVSLRLPG---SCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDM-------   71 (213)
T ss_pred             ceeeeeeeecCCC---ceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccc-------
Confidence            5899999998876   57999999999999999999999999999999999976543  35777776654311       


Q ss_pred             CCcccccccccccccccCc-ccccccccHH-HHhhcCCC-----CcHHHHHHHHHHcCCC--cccccccCCHHHHHHHHH
Q 022663           91 GDLSYLGGSWSKTVGSAGE-IPLQGDFSAE-HMIFGVEG-----SDPVRRERLIELLDID--LQWRMHKVSDGQRRRVQI  161 (294)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~-----~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~l  161 (294)
                           .+ .-+++++..++ .-+++.+++. ++.|.+..     ..+.....+++..++.  .++.|.+||||||-||++
T Consensus        72 -----lP-a~qRq~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL  145 (213)
T COG4136          72 -----LP-AAQRQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVAL  145 (213)
T ss_pred             -----cc-hhhhheeeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHH
Confidence                 11 11233444443 3345555543 33343322     1223346678888886  588899999999999999


Q ss_pred             HHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEe
Q 022663          162 CMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYI  224 (294)
Q Consensus       162 AraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l  224 (294)
                      -|+|+..|+.++||||+|.||..-|.++.++.-...+..|..+|.||||.+.+. ...||+.|
T Consensus       146 ~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~Dvp-agsrVie~  207 (213)
T COG4136         146 LRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVP-AGSRVIEM  207 (213)
T ss_pred             HHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCC-CCCeeeee
Confidence            999999999999999999999999999999998888888999999999999887 56677655

>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]

Probab=100.00  E-value=3.1e-34  Score=293.47  Aligned_cols=216  Identities=24%  Similarity=0.356  Sum_probs=176.7

Q ss_pred             ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663           12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG   91 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~   91 (294)
                      ..+.++++++.|+..  ..+++++||.|++||+.|++|+|||||||++|+|+|...|+ +|.+.+.|.+.......    
T Consensus       563 ~~~~~~~L~k~y~~~--~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t-~G~a~i~g~~i~~~~~~----  635 (885)
T KOG0059|consen  563 SALVLNNLSKVYGGK--DGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPT-SGEALIKGHDITVSTDF----  635 (885)
T ss_pred             ceEEEcceeeeecch--hhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCC-cceEEEecCccccccch----
Confidence            478999999999862  22899999999999999999999999999999999999887 88888877765321110    


Q ss_pred             CcccccccccccccccCc-ccccccccHHHHhh---cCCC---Cc-HHHHHHHHHHcCCC--cccccccCCHHHHHHHHH
Q 022663           92 DLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMIF---GVEG---SD-PVRRERLIELLDID--LQWRMHKVSDGQRRRVQI  161 (294)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~---~~-~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~l  161 (294)
                            ......+++.++ ..+...+|.++.+.   ...+   .+ ...++.+++.+++.  .+++++.+|||+|+|+++
T Consensus       636 ------~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~  709 (885)
T KOG0059|consen  636 ------QQVRKQLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSF  709 (885)
T ss_pred             ------hhhhhhcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHH
Confidence                  012334566655 34556677666432   1222   22 23457788888885  678899999999999999


Q ss_pred             HHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHHh
Q 022663          162 CMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDEL  241 (294)
Q Consensus       162 AraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  241 (294)
                      |.|++.+|++++|||||+|+||.+|+.+++++.++.+ .|+.||++||.+++++.+|||+.+|.+|++...|+++++...
T Consensus       710 aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k-~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LKsr  788 (885)
T KOG0059|consen  710 AIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRK-NGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELKSR  788 (885)
T ss_pred             HHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHHhh
Confidence            9999999999999999999999999999999999865 466999999999999999999999999999999999998754

>PLN03140 ABC transporter G family member; Provisional

Probab=100.00  E-value=1.8e-34  Score=306.01  Aligned_cols=199  Identities=20%  Similarity=0.236  Sum_probs=152.6

Q ss_pred             CCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccC--CCceEEecCCcccccccccccCCcccccccccccccc
Q 022663           29 PPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVG--GRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGS  106 (294)
Q Consensus        29 ~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~--~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (294)
                      +.+|+|+|+.|++||+++|+||||||||||||+|+|.+.++  -+|.+.++|.+.....   ....+.|..|.       
T Consensus       178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~---~~~~i~yv~Q~-------  247 (1470)
T PLN03140        178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFV---PRKTSAYISQN-------  247 (1470)
T ss_pred             ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhc---ccceeEEeccc-------
Confidence            56999999999999999999999999999999999987653  2688888886532110   01122332221       


Q ss_pred             cCcccccccccHHHHh-hc--CCC----------C-cH---------------------------HHHHHHHHHcCCC--
Q 022663          107 AGEIPLQGDFSAEHMI-FG--VEG----------S-DP---------------------------VRRERLIELLDID--  143 (294)
Q Consensus       107 ~~~~~~~~~~~~~~~~-~~--~~~----------~-~~---------------------------~~~~~~l~~l~l~--  143 (294)
                         ..+++.+|+.+.+ +.  ...          . ..                           ...+.+++.+++.  
T Consensus       248 ---d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~  324 (1470)
T PLN03140        248 ---DVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDIC  324 (1470)
T ss_pred             ---ccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccc
Confidence               2233444544322 21  000          0 00                           0134577888885  


Q ss_pred             c-----ccccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCh-hHHHhh
Q 022663          144 L-----QWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIF-DGLETW  217 (294)
Q Consensus       144 ~-----~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~-~~~~~~  217 (294)
                      .     +..++.|||||||||+||++|+.+|++|+|||||+|||+.++.++.+.|++++++.|.|||+++|++ +++..+
T Consensus       325 ~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~l  404 (1470)
T PLN03140        325 KDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDL  404 (1470)
T ss_pred             cCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHH
Confidence            1     4567899999999999999999999999999999999999999999999999876689999999996 688899


Q ss_pred             hceEEEeeCCeEEecccHHHHHH
Q 022663          218 ATHLAYIQDGELRRAEKLAELDE  240 (294)
Q Consensus       218 ~d~v~~l~~G~i~~~g~~~~~~~  240 (294)
                      +|+|++|++|++++.|+.+++.+
T Consensus       405 fD~vilL~~G~ivy~G~~~~~~~  427 (1470)
T PLN03140        405 FDDIILLSEGQIVYQGPRDHILE  427 (1470)
T ss_pred             hheEEEeeCceEEEeCCHHHHHH
Confidence            99999999999999999887754

>PTZ00243 ABC transporter; Provisional

Probab=100.00  E-value=2.6e-33  Score=299.95  Aligned_cols=185  Identities=22%  Similarity=0.272  Sum_probs=138.0

Q ss_pred             CCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcccccccccccccccC
Q 022663           29 PPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAG  108 (294)
Q Consensus        29 ~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (294)
                      +++|+|+||+|++|++++|+|||||||||||++|+|++.|+ .|.+.+.+             .+.|.+|.         
T Consensus       673 ~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~-~G~i~~~~-------------~i~yv~Q~---------  729 (1560)
T PTZ00243        673 KVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEIS-EGRVWAER-------------SIAYVPQQ---------  729 (1560)
T ss_pred             ceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCC-CcEEEECC-------------eEEEEeCC---------
Confidence            46899999999999999999999999999999999998886 77765421             23333322         


Q ss_pred             cccccccccH-HHHhhcCCCCcHHHHHH---------HHHHc--CCC--cccccccCCHHHHHHHHHHHHHccCCCEEEe
Q 022663          109 EIPLQGDFSA-EHMIFGVEGSDPVRRER---------LIELL--DID--LQWRMHKVSDGQRRRVQICMGLLHPFKVLLL  174 (294)
Q Consensus       109 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~---------~l~~l--~l~--~~~~~~~LSgGqkqRv~lAraL~~~p~iLlL  174 (294)
                       ..++. .+. +++.++.. .+.++..+         .++.+  ++.  .++++.+|||||||||+|||||+.+|++|||
T Consensus       730 -~~l~~-~Tv~enI~~~~~-~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illL  806 (1560)
T PTZ00243        730 -AWIMN-ATVRGNILFFDE-EDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLL  806 (1560)
T ss_pred             -CccCC-CcHHHHHHcCCh-hhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence             11222 233 33333221 12222222         22333  232  3567889999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHHh
Q 022663          175 DEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDEL  241 (294)
Q Consensus       175 DEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  241 (294)
                      ||||++||+.....+++.+..... .|+|+|++||+++.+. .||+|++|++|+++..|+++++.+.
T Consensus       807 DEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~~~-~ad~ii~l~~G~i~~~G~~~~l~~~  871 (1560)
T PTZ00243        807 DDPLSALDAHVGERVVEECFLGAL-AGKTRVLATHQVHVVP-RADYVVALGDGRVEFSGSSADFMRT  871 (1560)
T ss_pred             cCccccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEecCHHHHHhC
Confidence            999999999998888764432222 4899999999999985 6999999999999999999988653

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=5.3e-34  Score=231.79  Aligned_cols=209  Identities=23%  Similarity=0.356  Sum_probs=149.7

Q ss_pred             cEEEcceEEEcC----CCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccc
Q 022663           13 SIKVCGMQFSYE----GNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLV   88 (294)
Q Consensus        13 ~l~~~~ls~~y~----~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~   88 (294)
                      .|.++|++|+|-    ++-.-++|+++||+++.|||++|-||||||||||||+|-|-+.|+ +|.|.+.-...+-+... 
T Consensus         4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d-~G~I~v~H~g~~vdl~~-   81 (235)
T COG4778           4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPD-EGQILVRHEGEWVDLVT-   81 (235)
T ss_pred             eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCC-CceEEEEeCcchhhhhc-
Confidence            689999999983    212357999999999999999999999999999999999999887 77776543322111000 


Q ss_pred             ccCCcccccccccccccccCcc-cccccccHHHHh------hcCCCC-cHHHHHHHHHHcCCC---cccccccCCHHHHH
Q 022663           89 CSGDLSYLGGSWSKTVGSAGEI-PLQGDFSAEHMI------FGVEGS-DPVRRERLIELLDID---LQWRMHKVSDGQRR  157 (294)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~------~~~~~~-~~~~~~~~l~~l~l~---~~~~~~~LSgGqkq  157 (294)
                        ......-...+..++|+.++ ...+....-+..      .+.... ...+...++..|++.   ..-.|.++||||||
T Consensus        82 --a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQ  159 (235)
T COG4778          82 --AEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQ  159 (235)
T ss_pred             --cChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchhe
Confidence              00000000112233443331 122222222211      122111 123456778888885   25578999999999


Q ss_pred             HHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeC
Q 022663          158 RVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQD  226 (294)
Q Consensus       158 Rv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~  226 (294)
                      ||.|||.++.+-+||||||||++||..+++.+.++|.+. +..|.++|=|-||.+.=+.+|||++.+..
T Consensus       160 RVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~-Ka~GaAlvGIFHDeevre~vadR~~~~~~  227 (235)
T COG4778         160 RVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREA-KARGAALVGIFHDEEVREAVADRLLDVSA  227 (235)
T ss_pred             ehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHH-HhcCceEEEeeccHHHHHHHhhheeeccc
Confidence            999999999999999999999999999999999999875 55799999999999999999999987753

>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=5.7e-33  Score=273.71  Aligned_cols=213  Identities=23%  Similarity=0.308  Sum_probs=170.2

Q ss_pred             cEEEcceEEEcCCC--CCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCccc--CCCceEEecCCccccccccc
Q 022663           13 SIKVCGMQFSYEGN--DKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMV--GGRDVVQVLNRSSFHDTQLV   88 (294)
Q Consensus        13 ~l~~~~ls~~y~~~--~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~--~~~g~i~~~~~~~~~~~~~~   88 (294)
                      .+.+++++....+.  ..+.+|++||.++++||++||+||+||||||||++|+|....  .-+|.+.++|+....     
T Consensus        25 ~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~-----   99 (613)
T KOG0061|consen   25 KLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDS-----   99 (613)
T ss_pred             eeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCch-----
Confidence            47788888877542  136799999999999999999999999999999999997654  247889988853211     


Q ss_pred             ccCCcccccccccccccccCc-ccccccccHHHHhh-----cCCC-----CcHHHHHHHHHHcCCC--cccccc-----c
Q 022663           89 CSGDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMIF-----GVEG-----SDPVRRERLIELLDID--LQWRMH-----K  150 (294)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-----~~~~-----~~~~~~~~~l~~l~l~--~~~~~~-----~  150 (294)
                               ..++...+++.| ..+.+.+|++|.+.     ....     ...++++++++.|++.  .+..++     .
T Consensus       100 ---------~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rg  170 (613)
T KOG0061|consen  100 ---------RSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRG  170 (613)
T ss_pred             ---------hhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCc
Confidence                     112333444444 34567788776542     1221     1234578889999985  455554     5


Q ss_pred             CCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChh-HHHhhhceEEEeeCCeE
Q 022663          151 VSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFD-GLETWATHLAYIQDGEL  229 (294)
Q Consensus       151 LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~-~~~~~~d~v~~l~~G~i  229 (294)
                      +|||||+||+||.-|+.+|.||+|||||+|||..+..++.+.|++++++ |+|||++-|.+. .+.+..|++++|.+|++
T Consensus       171 iSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~-grtVi~tIHQPss~lf~lFD~l~lLs~G~~  249 (613)
T KOG0061|consen  171 LSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARS-GRTVICTIHQPSSELFELFDKLLLLSEGEV  249 (613)
T ss_pred             cccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhC-CCEEEEEEeCCcHHHHHHHhHhhhhcCCcE
Confidence            9999999999999999999999999999999999999999999999987 999999999984 67788999999999999


Q ss_pred             EecccHHHHHH
Q 022663          230 RRAEKLAELDE  240 (294)
Q Consensus       230 ~~~g~~~~~~~  240 (294)
                      ++.|++.+..+
T Consensus       250 vy~G~~~~~~~  260 (613)
T KOG0061|consen  250 VYSGSPRELLE  260 (613)
T ss_pred             EEecCHHHHHH
Confidence            99999987654

>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=100.00  E-value=2.5e-32  Score=242.65  Aligned_cols=102  Identities=20%  Similarity=0.296  Sum_probs=91.3

Q ss_pred             HHHHHHHHcCCC---cccccccCCHHHHHHHHHHHHHccC---CCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEE
Q 022663          132 RRERLIELLDID---LQWRMHKVSDGQRRRVQICMGLLHP---FKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIV  205 (294)
Q Consensus       132 ~~~~~l~~l~l~---~~~~~~~LSgGqkqRv~lAraL~~~---p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tvi  205 (294)
                      +..++++.+++.   +++++.+|||||+||++|||+|+.+   |+++||||||+|||+..+..+++.|.++.+ .|.|||
T Consensus       148 ~~~~~L~~vgL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~-~g~tvI  226 (261)
T cd03271         148 RKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVD-KGNTVV  226 (261)
T ss_pred             HHHHHHHHcCCchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEE
Confidence            445677888874   4788999999999999999999996   799999999999999999999999998864 589999


Q ss_pred             EEeCChhHHHhhhceEEEe------eCCeEEecccH
Q 022663          206 YATHIFDGLETWATHLAYI------QDGELRRAEKL  235 (294)
Q Consensus       206 ivsHd~~~~~~~~d~v~~l------~~G~i~~~g~~  235 (294)
                      +||||++++. .||+++.|      ++|++++.|++
T Consensus       227 iitH~~~~i~-~aD~ii~Lgp~~g~~~G~iv~~Gt~  261 (261)
T cd03271         227 VIEHNLDVIK-CADWIIDLGPEGGDGGGQVVASGTP  261 (261)
T ss_pred             EEeCCHHHHH-hCCEEEEecCCcCCCCCEEEEeCCC
Confidence            9999999986 69999999      89999998863

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=100.00  E-value=1.3e-32  Score=257.19  Aligned_cols=203  Identities=25%  Similarity=0.347  Sum_probs=154.3

Q ss_pred             cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663           11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS   90 (294)
Q Consensus        11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~   90 (294)
                      .|.+.++|++|+|.+  +..++++++|-|..++.+++|||||||||||||+++|.+.|. .|.+.......         
T Consensus       387 ~pvi~~~nv~F~y~~--~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~-~G~vs~~~H~~---------  454 (614)
T KOG0927|consen  387 PPVIMVQNVSFGYSD--NPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPT-IGMVSRHSHNK---------  454 (614)
T ss_pred             CCeEEEeccccCCCC--cchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccc-ccccccccccc---------
Confidence            578999999999976  347999999999999999999999999999999999998886 55543211100         


Q ss_pred             CCcccccccccccccccCcccccccccHHH-HhhcCC-CCcHHHHHHHHHHcCCC---cccccccCCHHHHHHHHHHHHH
Q 022663           91 GDLSYLGGSWSKTVGSAGEIPLQGDFSAEH-MIFGVE-GSDPVRRERLIELLDID---LQWRMHKVSDGQRRRVQICMGL  165 (294)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~l~~l~l~---~~~~~~~LSgGqkqRv~lAraL  165 (294)
                        +.++.|....      +..+  +.+.-+ +.-.+. ....+....++..+|+.   ...++++||+|||.||.+|+++
T Consensus       455 --~~~y~Qh~~e------~ldl--~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~  524 (614)
T KOG0927|consen  455 --LPRYNQHLAE------QLDL--DKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLA  524 (614)
T ss_pred             --chhhhhhhHh------hcCc--chhHHHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHH
Confidence              0011110000      0011  111111 111122 23455667889999986   3578899999999999999999


Q ss_pred             ccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeE-EecccHHHHH
Q 022663          166 LHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL-RRAEKLAELD  239 (294)
Q Consensus       166 ~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i-~~~g~~~~~~  239 (294)
                      +..|.+|||||||+|||..+...+.+.|.+    +..+||+||||..++.+++++|++..+|.+ .+.|++....
T Consensus       525 ~kqP~lLlLDEPtnhLDi~tid~laeaiNe----~~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i~~yk  595 (614)
T KOG0927|consen  525 VKQPHLLLLDEPTNHLDIETIDALAEAINE----FPGGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDIEIYK  595 (614)
T ss_pred             hcCCcEEEecCCCcCCCchhHHHHHHHHhc----cCCceeeeechhhHHHHHHHHhHhhccCceeecCccHHHHH
Confidence            999999999999999999999888888765    467899999999999999999999999876 5677776654

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.98  E-value=3.2e-31  Score=273.96  Aligned_cols=204  Identities=24%  Similarity=0.355  Sum_probs=160.7

Q ss_pred             cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663           11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS   90 (294)
Q Consensus        11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~   90 (294)
                      .+.++++|.+++++.....+.|+||||+|++|+.+||+||-|||||+||.+|.|..... +|.+.+.|.           
T Consensus       516 ~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~-sG~v~v~gs-----------  583 (1381)
T KOG0054|consen  516 ENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKL-SGSVAVNGS-----------  583 (1381)
T ss_pred             CceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccc-cceEEEcCe-----------
Confidence            45799999999997533345899999999999999999999999999999999987665 777766553           


Q ss_pred             CCcccccccccccccccCcccccccccHHHHhhcCCCCcHHHHHHHHHHcCCC-------------cccccccCCHHHHH
Q 022663           91 GDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDID-------------LQWRMHKVSDGQRR  157 (294)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------------~~~~~~~LSgGqkq  157 (294)
                        +.|.+|..+          +++....+|++|+. ..++++.+++++...+.             ...+.-+|||||||
T Consensus       584 --iaYv~Q~pW----------I~ngTvreNILFG~-~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKq  650 (1381)
T KOG0054|consen  584 --VAYVPQQPW----------IQNGTVRENILFGS-PYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQ  650 (1381)
T ss_pred             --EEEeccccH----------hhCCcHHHhhhcCc-cccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHH
Confidence              344433211          12222344555553 45677778887776652             12455689999999


Q ss_pred             HHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHH
Q 022663          158 RVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAE  237 (294)
Q Consensus       158 Rv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~  237 (294)
                      |++||||+-++++|+|||.|+|++|....+.+++-...-.- .++|+|+|||.++++. .||.|++|++|+|.+.|++++
T Consensus       651 RIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L-~~KT~ILVTHql~~L~-~ad~Iivl~~G~I~~~Gty~e  728 (1381)
T KOG0054|consen  651 RISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLL-RGKTVILVTHQLQFLP-HADQIIVLKDGKIVESGTYEE  728 (1381)
T ss_pred             HHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhh-cCCEEEEEeCchhhhh-hCCEEEEecCCeEecccCHHH
Confidence            99999999999999999999999999998887765554332 4799999999999877 599999999999999999999


Q ss_pred             HHHh
Q 022663          238 LDEL  241 (294)
Q Consensus       238 ~~~~  241 (294)
                      +.+.
T Consensus       729 l~~~  732 (1381)
T KOG0054|consen  729 LLKS  732 (1381)
T ss_pred             HHhc
Confidence            8753

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.97  E-value=2.9e-31  Score=274.25  Aligned_cols=214  Identities=17%  Similarity=0.195  Sum_probs=164.5

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      .|+++|++.+|..+ -+.||+||||+|++||.+||||..|||||||+.+|..+..|. +|.|.++|.+...-.-      
T Consensus      1138 ~I~f~~~~~RYrp~-lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~-~G~I~IDgvdI~~igL------ 1209 (1381)
T KOG0054|consen 1138 EIEFEDLSLRYRPN-LPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPA-EGEILIDGVDISKIGL------ 1209 (1381)
T ss_pred             eEEEEEeEEEeCCC-CcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCcc-CCeEEEcCeecccccH------
Confidence            69999999999753 367999999999999999999999999999999999998886 8999999987543111      


Q ss_pred             cccccccccccccccCcc-cccccccHHHHhhcCCCCcHHHHHHHHHHcCC---------Cccc----ccccCCHHHHHH
Q 022663           93 LSYLGGSWSKTVGSAGEI-PLQGDFSAEHMIFGVEGSDPVRRERLIELLDI---------DLQW----RMHKVSDGQRRR  158 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l---------~~~~----~~~~LSgGqkqR  158 (294)
                           .+++..++.++|. .++..... .++-......++..-++++..++         .++.    ...++|-||||.
T Consensus      1210 -----~dLRsrlsIIPQdPvLFsGTvR-~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQL 1283 (1381)
T KOG0054|consen 1210 -----HDLRSRLSIIPQDPVLFSGTVR-FNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQL 1283 (1381)
T ss_pred             -----HHHHhcCeeeCCCCceecCccc-cccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHH
Confidence                 1233344444442 23322221 11211112223333344444332         2333    345799999999


Q ss_pred             HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663          159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL  238 (294)
Q Consensus       159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~  238 (294)
                      ++|||||+++++||+|||.|+++|+++-..|.+.|++.-+  ++|||.|-|+++-+.+ ||||+||++|++++.++|.++
T Consensus      1284 lCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~--dcTVltIAHRl~TVmd-~DrVlVld~G~v~EfdsP~~L 1360 (1381)
T KOG0054|consen 1284 LCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFK--DCTVLTIAHRLNTVMD-SDRVLVLDAGRVVEFDSPAEL 1360 (1381)
T ss_pred             HHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhc--CCeEEEEeeccchhhh-cCeEEEeeCCeEeecCChHHH
Confidence            9999999999999999999999999999999999988653  7999999999999997 899999999999999999999


Q ss_pred             HHhhh
Q 022663          239 DELRN  243 (294)
Q Consensus       239 ~~~~~  243 (294)
                      ++++.
T Consensus      1361 l~~~~ 1365 (1381)
T KOG0054|consen 1361 LSDKD 1365 (1381)
T ss_pred             HhCCc
Confidence            87654

>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

Probab=99.97  E-value=2.4e-32  Score=223.15  Aligned_cols=209  Identities=23%  Similarity=0.282  Sum_probs=155.4

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      +++++||+..-       -|-.+|.++..||++-+||||||||||||-.++|+++  ++|.|.+.|.+............
T Consensus         3 l~qln~v~~~t-------RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~--~sGsi~~~G~~l~~~~~~eLArh   73 (248)
T COG4138           3 LMQLNDVAEST-------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS--GSGSIQFAGQPLEAWSATELARH   73 (248)
T ss_pred             eeeeccccccc-------cccccccccccceEEEEECCCCccHHHHHHHHhCCCC--CCceEEECCcchhHHhHhHHHHH
Confidence            68889988742       2678999999999999999999999999999999764  48999999886432110000111


Q ss_pred             cccccccccccccccCcccccccccHHHHhhcCCCCcH---HHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHHHcc
Q 022663           93 LSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDP---VRRERLIELLDID--LQWRMHKVSDGQRRRVQICMGLLH  167 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL~~  167 (294)
                      ..|..+.         +.+.+ .+.+..++. +...+.   .....+...++++  +.+..++|||||.|||-+|..+++
T Consensus        74 RAYLsQq---------q~p~f-~mpV~~YL~-L~qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQ  142 (248)
T COG4138          74 RAYLSQQ---------QTPPF-AMPVWHYLT-LHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQ  142 (248)
T ss_pred             HHHHhhc---------cCCcc-hhhhhhhhh-hcCchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEE
Confidence            1222111         01100 111122111 111112   2345566677774  678889999999999999998875


Q ss_pred             -----CC--CEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHH
Q 022663          168 -----PF--KVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDE  240 (294)
Q Consensus       168 -----~p--~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  240 (294)
                           ||  ++||+|||.++||...+..+..+|.++|++ |.+|||++||++-..+.||+++++.+|++...|..++++.
T Consensus       143 v~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~-G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt  221 (248)
T COG4138         143 ITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQ-GLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLT  221 (248)
T ss_pred             ecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhC-CcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcC
Confidence                 33  799999999999999999999999999964 9999999999999999999999999999999999998876


Q ss_pred             hh
Q 022663          241 LR  242 (294)
Q Consensus       241 ~~  242 (294)
                      ..
T Consensus       222 ~~  223 (248)
T COG4138         222 PP  223 (248)
T ss_pred             hH
Confidence            53

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=99.97  E-value=2.7e-31  Score=227.71  Aligned_cols=163  Identities=17%  Similarity=0.156  Sum_probs=116.0

Q ss_pred             eeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCc---------eEEecCCcccccccccccCCccccccccccc
Q 022663           33 YDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRD---------VVQVLNRSSFHDTQLVCSGDLSYLGGSWSKT  103 (294)
Q Consensus        33 ~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g---------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (294)
                      ++++|++.+| +++|+||||||||||+++|+|++.+. .+         .+.+.+.+...              ......
T Consensus        14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~   77 (197)
T cd03278          14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQ-SAKSLRGEKMSDVIFAGSETRK--------------PANFAE   77 (197)
T ss_pred             CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccc-cchhhcccCHHHHhccCCCCCC--------------CCceEE
Confidence            6789999999 99999999999999999999976543 11         11111111000              000122


Q ss_pred             ccccCccc-ccccccHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHHHc----cCCCEEEeeCCC
Q 022663          104 VGSAGEIP-LQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLL----HPFKVLLLDEIT  178 (294)
Q Consensus       104 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv~lAraL~----~~p~iLlLDEPt  178 (294)
                      ++++++.+ .+         +..  ...+++.++++. .-..++.+.+||||||||++||++++    .+|+++||||||
T Consensus        78 v~~vfq~~~~~---------~~~--~~~~~~~~~l~~-~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~  145 (197)
T cd03278          78 VTLTFDNSDGR---------YSI--ISQGDVSEIIEA-PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVD  145 (197)
T ss_pred             EEEEEEcCCCc---------eeE--EehhhHHHHHhC-CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCc
Confidence            33332211 11         111  012344555555 21246788999999999999999997    467999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeC
Q 022663          179 VDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQD  226 (294)
Q Consensus       179 ~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~  226 (294)
                      ++||+..+..+.+.|.++.+  +.|||+||||++++ .+||+++.+..
T Consensus       146 ~~LD~~~~~~l~~~l~~~~~--~~tiIiitH~~~~~-~~~d~v~~~~~  190 (197)
T cd03278         146 AALDDANVERFARLLKEFSK--ETQFIVITHRKGTM-EAADRLYGVTM  190 (197)
T ss_pred             ccCCHHHHHHHHHHHHHhcc--CCEEEEEECCHHHH-hhcceEEEEEe
Confidence            99999999999999998743  68999999999987 58999999874

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=99.97  E-value=4.1e-31  Score=247.19  Aligned_cols=217  Identities=21%  Similarity=0.309  Sum_probs=143.7

Q ss_pred             ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEe--cCCcccccccccc
Q 022663           12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQV--LNRSSFHDTQLVC   89 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~--~~~~~~~~~~~~~   89 (294)
                      ..+.++|+++.|.+   ..+++|++|++.+|+.+||+|+|||||||+|++|+|-..|. ...+.+  ....... ..   
T Consensus        74 ~dvk~~sls~s~~g---~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~-p~~~d~y~ls~e~~p-s~---  145 (614)
T KOG0927|consen   74 RDVKIESLSLSFHG---VELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPI-PEHIDFYLLSREIEP-SE---  145 (614)
T ss_pred             ccceeeeeeeccCC---ceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCC-CcccchhhhcccCCC-ch---
Confidence            36999999999976   68999999999999999999999999999999999966553 111111  1100000 00   


Q ss_pred             cCCccccc---ccccccccccCc-cccc-cccc---HHHHhhcCCCCc----HHHHHHHHHHcCCC---cccccccCCHH
Q 022663           90 SGDLSYLG---GSWSKTVGSAGE-IPLQ-GDFS---AEHMIFGVEGSD----PVRRERLIELLDID---LQWRMHKVSDG  154 (294)
Q Consensus        90 ~~~~~~~~---~~~~~~~~~~~~-~~~~-~~~~---~~~~~~~~~~~~----~~~~~~~l~~l~l~---~~~~~~~LSgG  154 (294)
                      .+.+....   ...+..+.+..+ .... ....   ..+........+    ..+...++..++..   .++....||||
T Consensus       146 ~~av~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgG  225 (614)
T KOG0927|consen  146 KQAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGG  225 (614)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCch
Confidence            00000000   000000000000 0000 0000   000000000001    11233445555543   46788999999


Q ss_pred             HHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCc-EEEEEeCChhHHHhhhceEEEeeCCe-EEec
Q 022663          155 QRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGA-TIVYATHIFDGLETWATHLAYIQDGE-LRRA  232 (294)
Q Consensus       155 qkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~-tviivsHd~~~~~~~~d~v~~l~~G~-i~~~  232 (294)
                      +++|++|||+|+.+|++|||||||+|||++++.++.+.|.++    .. ++++++|+.+++..+|.+|+.|++++ +.+.
T Consensus       226 wrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~----d~~~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y~  301 (614)
T KOG0927|consen  226 WRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKY----DRIILVIVSHSQDFLNGVCTNIIHLDNKKLIYYE  301 (614)
T ss_pred             HHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhc----cCceEEEEecchhhhhhHhhhhheecccceeeec
Confidence            999999999999999999999999999999998888888754    34 89999999999999999999999999 6788


Q ss_pred             ccHHHHHH
Q 022663          233 EKLAELDE  240 (294)
Q Consensus       233 g~~~~~~~  240 (294)
                      |+.+.+..
T Consensus       302 Gnydqy~~  309 (614)
T KOG0927|consen  302 GNYDQYVK  309 (614)
T ss_pred             CCHHHHhh
Confidence            98887643

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=99.97  E-value=1.6e-31  Score=248.58  Aligned_cols=198  Identities=26%  Similarity=0.295  Sum_probs=140.4

Q ss_pred             ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663           12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG   91 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~   91 (294)
                      .-|.+.+.+..|++   +.+|++-++++..|-.+||+|+||+|||||||+|+.-       .+......     . .+.+
T Consensus        79 ~Di~~~~fdLa~G~---k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~~-------~v~~f~ve-----q-E~~g  142 (582)
T KOG0062|consen   79 KDIHIDNFDLAYGG---KILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIANG-------QVSGFHVE-----Q-EVRG  142 (582)
T ss_pred             cceeeeeeeeeecc---hhhhcCCceeeecccccceeCCCCCcHHHHHHHHHhc-------CcCccCch-----h-heec
Confidence            36889999999986   6799999999999999999999999999999999851       01000000     0 0000


Q ss_pred             CcccccccccccccccCcccccccccHHHHhhcC----CCCcHHH-HHHHHHHcCCC---cccccccCCHHHHHHHHHHH
Q 022663           92 DLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGV----EGSDPVR-RERLIELLDID---LQWRMHKVSDGQRRRVQICM  163 (294)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~l~~l~l~---~~~~~~~LSgGqkqRv~lAr  163 (294)
                      +.....           +..+..+.....++..-    .....+. ...++..++..   ..++..+||||.|.|++|||
T Consensus       143 ~~t~~~-----------~~~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLAR  211 (582)
T KOG0062|consen  143 DDTEAL-----------QSVLESDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALAR  211 (582)
T ss_pred             cchHHH-----------hhhhhccHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHH
Confidence            000000           00001111111111110    0001122 23377788875   35678999999999999999


Q ss_pred             HHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeE-EecccHHHHHH
Q 022663          164 GLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL-RRAEKLAELDE  240 (294)
Q Consensus       164 aL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i-~~~g~~~~~~~  240 (294)
                      ||..+|||||||||||+||..+..++.+.|..    ++.|+|+||||..|+..+|..|+.+++-++ .+.|..+++.+
T Consensus       212 Alf~~pDlLLLDEPTNhLDv~av~WLe~yL~t----~~~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~Fvk  285 (582)
T KOG0062|consen  212 ALFAKPDLLLLDEPTNHLDVVAVAWLENYLQT----WKITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQFVK  285 (582)
T ss_pred             HHhcCCCEEeecCCcccchhHHHHHHHHHHhh----CCceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHHHHH
Confidence            99999999999999999999999888887765    468999999999999999999999998777 35677776644

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=99.97  E-value=1.3e-30  Score=226.25  Aligned_cols=191  Identities=17%  Similarity=0.133  Sum_probs=123.1

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEe-CCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEec-CCccccccccccc
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGIS-PGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVL-NRSSFHDTQLVCS   90 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~-~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~-~~~~~~~~~~~~~   90 (294)
                      .|+++|+. +|.+   .   .+++|+.. +|++++|+||||||||||+++|++.+.-...+..... ......       
T Consensus         5 ~i~l~nf~-~y~~---~---~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~-------   70 (213)
T cd03279           5 KLELKNFG-PFRE---E---QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFA-------   70 (213)
T ss_pred             EEEEECCc-CcCC---c---eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhc-------
Confidence            58889988 6644   2   56777654 5899999999999999999999964311101111100 000000       


Q ss_pred             CCcccccccccccccccCcccccccccHHHHhhcCCCCcHHHHHH--HHHHcCCC--cccccccCCHHHHHHHHHHHHHc
Q 022663           91 GDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRER--LIELLDID--LQWRMHKVSDGQRRRVQICMGLL  166 (294)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL~  166 (294)
                          .  ......+...++..- ......    .....+.+...+  .+...++.  .++++.+||+||+||++|||||+
T Consensus        71 ----~--~~~~~~v~~~f~~~~-~~~~~~----r~~gl~~~~~~~~~~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~  139 (213)
T cd03279          71 ----P--GEDTAEVSFTFQLGG-KKYRVE----RSRGLDYDQFTRIVLLPQGEFDRFLARPVSTLSGGETFLASLSLALA  139 (213)
T ss_pred             ----C--CCccEEEEEEEEECC-eEEEEE----EecCCCHHHHHHhhhhhhcchHHHhcCCccccCHHHHHHHHHHHHHH
Confidence                0  000001111111000 000000    000112221111  12222222  46788999999999999999998


Q ss_pred             c----------CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeE
Q 022663          167 H----------PFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL  229 (294)
Q Consensus       167 ~----------~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i  229 (294)
                      .          +|++|||||||++||+..+..+.+.|.++.+ .+.|||+||||++++..+||+++++++|..
T Consensus       140 ~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~-~~~tii~itH~~~~~~~~~~~i~~~~~~~~  211 (213)
T cd03279         140 LSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRT-ENRMVGVISHVEELKERIPQRLEVIKTPGG  211 (213)
T ss_pred             hHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEECchHHHHhhCcEEEEEecCCC
Confidence            4          6789999999999999999999999998764 488999999999999999999999999864

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.97  E-value=9.9e-30  Score=240.40  Aligned_cols=217  Identities=17%  Similarity=0.249  Sum_probs=160.5

Q ss_pred             cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccc-cccc
Q 022663           11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDT-QLVC   89 (294)
Q Consensus        11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~-~~~~   89 (294)
                      .+.+++++++..       ..++|+||++.+|||+||.|-=|||+|-|+++|.|...+. +|.+.++|++..... ....
T Consensus       261 ~~~l~v~~l~~~-------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~-~G~i~l~G~~v~~~sp~~Ai  332 (500)
T COG1129         261 EPVLEVRNLSGG-------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPAS-SGEILLDGKPVRIRSPRDAI  332 (500)
T ss_pred             CcEEEEecCCCC-------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCC-CceEEECCEEccCCCHHHHH
Confidence            456888887753       1478999999999999999999999999999999966555 999999998643221 1112


Q ss_pred             cCCcccccccccccccccCcccccccccHHHHh-hc---CCC--CcHHHHHHHHHHcCCC---cccccccCCHHHHHHHH
Q 022663           90 SGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMI-FG---VEG--SDPVRRERLIELLDID---LQWRMHKVSDGQRRRVQ  160 (294)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~--~~~~~~~~~l~~l~l~---~~~~~~~LSgGqkqRv~  160 (294)
                      ...+.|++.+... -+.+...++..+++...+. +.   +-.  ......+++.+.|++.   .+..+..||||.||||.
T Consensus       333 ~~Gi~~v~EDRk~-~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVv  411 (500)
T COG1129         333 KAGIAYVPEDRKS-EGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVV  411 (500)
T ss_pred             HcCCEeCCccccc-CcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHH
Confidence            2234455443321 1222122222222211110 00   001  1122345677788874   56789999999999999


Q ss_pred             HHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHH
Q 022663          161 ICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAE  237 (294)
Q Consensus       161 lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~  237 (294)
                      |||.|+.+|++|||||||.|.|.-++.+|+++|.+++++ |++||++|-+++++..+||||++|++|+++..-+.++
T Consensus       412 larwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~-G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~~~~  487 (500)
T COG1129         412 LARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAE-GKAILMISSELPELLGLSDRILVMREGRIVGELDREE  487 (500)
T ss_pred             HHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHC-CCEEEEEeCChHHHHhhCCEEEEEECCEEEEEecccc
Confidence            999999999999999999999999999999999999865 9999999999999999999999999999987655444

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=99.97  E-value=3e-30  Score=208.08  Aligned_cols=130  Identities=28%  Similarity=0.384  Sum_probs=95.1

Q ss_pred             eeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcccccccccccccccCc-c
Q 022663           32 FYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGE-I  110 (294)
Q Consensus        32 L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  110 (294)
                      |+||||+|++|++++|+|+||||||||+++|+|...+. .|.+.+++.+.......           ..+..++++.+ .
T Consensus         1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~-~G~i~~~~~~~~~~~~~-----------~~~~~i~~~~~~~   68 (137)
T PF00005_consen    1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPD-SGSILINGKDISDIDIE-----------ELRRRIGYVPQDP   68 (137)
T ss_dssp             EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHES-EEEEEETTEEGTTSHHH-----------HHHHTEEEEESSH
T ss_pred             CCceEEEEcCCCEEEEEccCCCccccceeeeccccccc-ccccccccccccccccc-----------ccccccccccccc
Confidence            68999999999999999999999999999999998886 89998887654321110           11222333322 2


Q ss_pred             cccccccHHHHhhcCCCCcHHHHHHHHHHcCCC------cccccccCCHHHHHHHHHHHHHccCCCEEEeeCCCC
Q 022663          111 PLQGDFSAEHMIFGVEGSDPVRRERLIELLDID------LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITV  179 (294)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~------~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~  179 (294)
                      .++...+..+.      ....+...+++.+++.      .++++.+||+||||||+|||||+.+|++||||||||
T Consensus        69 ~~~~~~tv~~~------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~  137 (137)
T PF00005_consen   69 QLFPGLTVREN------ESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN  137 (137)
T ss_dssp             CHHTTSBHHHH------HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred             ccccccccccc------cccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence            23333433332      1234566777777753      234459999999999999999999999999999997

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.97  E-value=9.1e-30  Score=224.90  Aligned_cols=79  Identities=25%  Similarity=0.339  Sum_probs=69.8

Q ss_pred             cccccccCCHHHHHHHHHHHHHc----cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhc
Q 022663          144 LQWRMHKVSDGQRRRVQICMGLL----HPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWAT  219 (294)
Q Consensus       144 ~~~~~~~LSgGqkqRv~lAraL~----~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d  219 (294)
                      .+.++.+||||||||++|||||+    .+|+++||||||++||+..+..+++.|.++.+  +.+||++||+.+ +.++||
T Consensus       152 ~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~--~~~ii~~~h~~~-~~~~~d  228 (243)
T cd03272         152 EQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD--GAQFITTTFRPE-LLEVAD  228 (243)
T ss_pred             ccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC--CCEEEEEecCHH-HHhhCC
Confidence            35678899999999999999996    36899999999999999999999999998743  778888888865 668999


Q ss_pred             eEEEee
Q 022663          220 HLAYIQ  225 (294)
Q Consensus       220 ~v~~l~  225 (294)
                      ++++|.
T Consensus       229 ~i~~l~  234 (243)
T cd03272         229 KFYGVK  234 (243)
T ss_pred             EEEEEE
Confidence            999986

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=99.96  E-value=1.8e-29  Score=228.70  Aligned_cols=200  Identities=24%  Similarity=0.352  Sum_probs=156.0

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      .|+++|+.|.|...  ..=+..||++|++||++-|+|.||||||||+++++|++.|+ +|.|.++|.+.......     
T Consensus       322 ~lelrnvrfay~~~--~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~Pq-sG~I~ldg~pV~~e~le-----  393 (546)
T COG4615         322 TLELRNVRFAYQDN--AFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQ-SGEILLDGKPVSAEQLE-----  393 (546)
T ss_pred             ceeeeeeeeccCcc--cceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCC-CCceeECCccCCCCCHH-----
Confidence            69999999999752  24578999999999999999999999999999999999998 99999999875332110     


Q ss_pred             cccccccccccccccC-cccccccccHHHHhhcCCC-CcHHHHHHHHHHcCCC-----ccc--ccccCCHHHHHHHHHHH
Q 022663           93 LSYLGGSWSKTVGSAG-EIPLQGDFSAEHMIFGVEG-SDPVRRERLIELLDID-----LQW--RMHKVSDGQRRRVQICM  163 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~l~l~-----~~~--~~~~LSgGqkqRv~lAr  163 (294)
                            +++.-+..++ ++.+++      -.++.++ ...+.++.+++.+.+.     .+.  ..-.||.|||+|+++.-
T Consensus       394 ------dYR~LfSavFsDyhLF~------~ll~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~  461 (546)
T COG4615         394 ------DYRKLFSAVFSDYHLFD------QLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLL  461 (546)
T ss_pred             ------HHHHHHHHHhhhHhhhH------hhhCCccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHH
Confidence                  1111111010 111111      1223333 3456677888888763     122  34579999999999999


Q ss_pred             HHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecc
Q 022663          164 GLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAE  233 (294)
Q Consensus       164 aL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g  233 (294)
                      |++-+.+|+++||=.+.-||.-|+.+++.+.-..++.|+||+.||||-... ..|||++.+++|++++..
T Consensus       462 AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF-~~ADrll~~~~G~~~e~t  530 (546)
T COG4615         462 ALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYF-IHADRLLEMRNGQLSELT  530 (546)
T ss_pred             HHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhh-hhHHHHHHHhcCceeecc
Confidence            999999999999999999999999999999988889999999999997654 469999999999998754

>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.96  E-value=1.5e-29  Score=212.35  Aligned_cols=234  Identities=15%  Similarity=0.240  Sum_probs=165.2

Q ss_pred             cccEEEcceEEEcCCCC-CCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCC---CceEEecCCccccccc
Q 022663           11 LNSIKVCGMQFSYEGND-KPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGG---RDVVQVLNRSSFHDTQ   86 (294)
Q Consensus        11 ~~~l~~~~ls~~y~~~~-~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~---~g~i~~~~~~~~~~~~   86 (294)
                      |+.|.++|++..+.... ...+++++|+++.+||+-||+|+||||||-..|.|+|...-.-   .....+++.+......
T Consensus         1 M~LLDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~P   80 (330)
T COG4170           1 MPLLDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSP   80 (330)
T ss_pred             CCcccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCCh
Confidence            46789999999885321 2458999999999999999999999999999999999653210   1111222221111000


Q ss_pred             ccccCCcccccccccccccccCcccc---cccc-cHHHHh------------hcCCCCcHHHHHHHHHHcCCC-----cc
Q 022663           87 LVCSGDLSYLGGSWSKTVGSAGEIPL---QGDF-SAEHMI------------FGVEGSDPVRRERLIELLDID-----LQ  145 (294)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~------------~~~~~~~~~~~~~~l~~l~l~-----~~  145 (294)
                         ......+    ...+.+.++.+.   .+.- ...+++            +..-.+.+.+.-+++..+|+.     ..
T Consensus        81 ---r~RRk~i----g~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~  153 (330)
T COG4170          81 ---RERRKLV----GHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMR  153 (330)
T ss_pred             ---HHhhhhh----ccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHH
Confidence               0000000    011222222111   0000 011111            111123445566778888885     24


Q ss_pred             cccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEee
Q 022663          146 WRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQ  225 (294)
Q Consensus       146 ~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~  225 (294)
                      .+|.+|--||-|+|+||.|++.+|++||.||||+++|+.++.+++.+|.++.+..|.||+++|||+..+.++||++-+|.
T Consensus       154 SYP~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlY  233 (330)
T COG4170         154 SYPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLY  233 (330)
T ss_pred             hCcchhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEE
Confidence            58899999999999999999999999999999999999999999999999988889999999999999999999999999


Q ss_pred             CCeEEecccHHHHHHhhh---hhhhHHHH
Q 022663          226 DGELRRAEKLAELDELRN---STNLLSVV  251 (294)
Q Consensus       226 ~G~i~~~g~~~~~~~~~~---~~~~~~~~  251 (294)
                      =|+-++.++.+++.+.+.   .+.++..+
T Consensus       234 CGQ~~ESa~~e~l~~~PhHPYTqALi~a~  262 (330)
T COG4170         234 CGQTVESAPSEELVTMPHHPYTQALIRAI  262 (330)
T ss_pred             ecccccccchhHHhcCCCCchHHHHHHhC
Confidence            999999999999887643   34444443

>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.96  E-value=5.7e-30  Score=221.89  Aligned_cols=187  Identities=16%  Similarity=0.179  Sum_probs=115.8

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      .|+++|.. .|++   ..++++++|     ++++|+||||||||||+++|.-..           |.+....    ....
T Consensus         5 ~l~l~nfk-~~~~---~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~~-----------G~~~~~~----~~~~   60 (212)
T cd03274           5 KLVLENFK-SYAG---EQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFVF-----------GFRASKM----RQKK   60 (212)
T ss_pred             EEEEECcc-cCCC---CeeeccCCC-----CeEEEECCCCCCHHHHHHHHHHHh-----------ccCHHHh----hhhh
Confidence            37788876 7865   568898887     899999999999999999997210           0000000    0001


Q ss_pred             ccccccccccccc-ccCcc-ccccccc-HHHH-hhcCCCCcHH---HHHHHHHHcCCC--cccccccCCHHHHHHHHHHH
Q 022663           93 LSYLGGSWSKTVG-SAGEI-PLQGDFS-AEHM-IFGVEGSDPV---RRERLIELLDID--LQWRMHKVSDGQRRRVQICM  163 (294)
Q Consensus        93 ~~~~~~~~~~~~~-~~~~~-~~~~~~~-~~~~-~~~~~~~~~~---~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAr  163 (294)
                      +.+..+.....-. ...+. ..+.... ...+ ..+.......   ...++++.+++.  .++++..||+|||||++||+
T Consensus        61 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~~lS~G~~~r~~la~  140 (212)
T cd03274          61 LSDLIHNSAGHPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNISNLSGGEKTLSSLAL  140 (212)
T ss_pred             HHHHhcCCCCCCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchhhcCHHHHHHHHHHH
Confidence            1111110000000 00000 0000000 0000 0111100000   012334445553  46678899999999999999


Q ss_pred             HHcc----CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeC
Q 022663          164 GLLH----PFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQD  226 (294)
Q Consensus       164 aL~~----~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~  226 (294)
                      |++.    +|++++|||||+|||+.++..+.+.|.++.  .+.|+|++||+. ++.++||+|++|..
T Consensus       141 al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~--~~~~~iivs~~~-~~~~~~d~v~~~~~  204 (212)
T cd03274         141 VFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERT--KNAQFIVISLRN-NMFELADRLVGIYK  204 (212)
T ss_pred             HHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHc--CCCEEEEEECcH-HHHHhCCEEEEEEe
Confidence            9974    589999999999999999999999999874  367999999995 56789999999974

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=99.96  E-value=1.3e-28  Score=225.47  Aligned_cols=202  Identities=21%  Similarity=0.303  Sum_probs=147.2

Q ss_pred             cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663           11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS   90 (294)
Q Consensus        11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~   90 (294)
                      .|.|-+.+|+|.|++  .+++++.++|-|.-...+|||||||.||||||++|.|.+.|. .|...-+-           +
T Consensus       584 PPvLGlH~VtFgy~g--qkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~-~GE~RKnh-----------r  649 (807)
T KOG0066|consen  584 PPVLGLHDVTFGYPG--QKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPN-DGELRKNH-----------R  649 (807)
T ss_pred             CCeeecccccccCCC--CCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCC-cchhhccc-----------e
Confidence            468999999999976  478999999999999999999999999999999999988886 44322110           0


Q ss_pred             CCcccccccccccccccCcccccccccHHHHhhcCCCCcHHHHHHHHHHcCCCcc---cccccCCHHHHHHHHHHHHHcc
Q 022663           91 GDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQ---WRMHKVSDGQRRRVQICMGLLH  167 (294)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~---~~~~~LSgGqkqRv~lAraL~~  167 (294)
                      -.+.++.+....        .+...-+..+++....+...+.....+-.|++..+   -.+..|||||+-||++|-.-+.
T Consensus       650 L~iG~FdQh~~E--------~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~  721 (807)
T KOG0066|consen  650 LRIGWFDQHANE--------ALNGEETPVEYLQRKFNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALG  721 (807)
T ss_pred             eeeechhhhhHH--------hhccccCHHHHHHHhcCCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcC
Confidence            012222221110        11112222222221112334455566777777532   3578999999999999999999


Q ss_pred             CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEe-cccHHHH
Q 022663          168 PFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRR-AEKLAEL  238 (294)
Q Consensus       168 ~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~-~g~~~~~  238 (294)
                      .|+||||||||++||.++...+.+.|.+    +...||+||||-.++.+..-.++|+++..|-+ +|+.+++
T Consensus       722 ~PDvlILDEPTNNLDIESIDALaEAIne----y~GgVi~VsHDeRLi~eT~C~LwVvE~Q~i~eIdGdFeDY  789 (807)
T KOG0066|consen  722 GPDVLILDEPTNNLDIESIDALAEAINE----YNGGVIMVSHDERLIVETDCNLWVVENQGIDEIDGDFEDY  789 (807)
T ss_pred             CCCEEEecCCCCCcchhhHHHHHHHHHh----ccCcEEEEecccceeeecCceEEEEccCChhhccccHHHH
Confidence            9999999999999999999988888875    46689999999999888877888888766533 4555554

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=99.95  E-value=4.3e-27  Score=239.57  Aligned_cols=108  Identities=20%  Similarity=0.283  Sum_probs=96.5

Q ss_pred             HHHHHHcCCC---cccccccCCHHHHHHHHHHHHHccCC---CEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEE
Q 022663          134 ERLIELLDID---LQWRMHKVSDGQRRRVQICMGLLHPF---KVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYA  207 (294)
Q Consensus       134 ~~~l~~l~l~---~~~~~~~LSgGqkqRv~lAraL~~~p---~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviiv  207 (294)
                      .+.++.+++.   +++++.+|||||+||++||++|+.+|   +++||||||+|||+..+..+++.|.++.+ .|.|||+|
T Consensus       811 l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~-~G~TVIii  889 (943)
T PRK00349        811 LQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVD-KGNTVVVI  889 (943)
T ss_pred             HHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEE
Confidence            4556677774   47889999999999999999999999   99999999999999999999999998864 58999999


Q ss_pred             eCChhHHHhhhceEEEe------eCCeEEecccHHHHHHhhh
Q 022663          208 THIFDGLETWATHLAYI------QDGELRRAEKLAELDELRN  243 (294)
Q Consensus       208 sHd~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~~~~  243 (294)
                      |||++++. .||+|+.|      ++|+++..|+++++.....
T Consensus       890 tH~~~~i~-~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~~~~  930 (943)
T PRK00349        890 EHNLDVIK-TADWIIDLGPEGGDGGGEIVATGTPEEVAKVEA  930 (943)
T ss_pred             ecCHHHHH-hCCEEEEecCCcCCCCCEEEEeCCHHHHHhCcc
Confidence            99999985 79999999      7999999999999876543

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.95  E-value=3e-28  Score=216.46  Aligned_cols=180  Identities=16%  Similarity=0.222  Sum_probs=111.4

Q ss_pred             CCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCC-cccccccc--cccCCcccccccccccccccCcccccccccH
Q 022663           42 GSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNR-SSFHDTQL--VCSGDLSYLGGSWSKTVGSAGEIPLQGDFSA  118 (294)
Q Consensus        42 Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (294)
                      ..+++|+||||||||||+++|+|++.+...+.+...+. +.......  .....+.+..+...... ......+.+.++.
T Consensus        25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~-~~~~~~~~~~ltV  103 (251)
T cd03273          25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQ-SPIGFENYPEITV  103 (251)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCccc-CcccccCCceEEE
Confidence            45999999999999999999999876542344444333 11100000  00001111111100000 0000000001111


Q ss_pred             H-HHh------hcCC--CCcHHHHHHHHHHcCCCc----------------------ccccccCCHHHHHHHHHHHHHc-
Q 022663          119 E-HMI------FGVE--GSDPVRRERLIELLDIDL----------------------QWRMHKVSDGQRRRVQICMGLL-  166 (294)
Q Consensus       119 ~-~~~------~~~~--~~~~~~~~~~l~~l~l~~----------------------~~~~~~LSgGqkqRv~lAraL~-  166 (294)
                      . ++.      +...  .....++.++++.+++..                      +.++.+||+|||||++||+||+ 
T Consensus       104 ~r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~  183 (251)
T cd03273         104 TRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILAL  183 (251)
T ss_pred             EEEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHH
Confidence            0 000      0011  112345566777777642                      3578899999999999999997 


Q ss_pred             ---cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEee
Q 022663          167 ---HPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQ  225 (294)
Q Consensus       167 ---~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~  225 (294)
                         .+|+++||||||++||+..+..+++.|.++.  .|.|||+|||+.+ +.+.||+|+-+.
T Consensus       184 ~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~--~g~~ii~iSH~~~-~~~~~d~v~~~~  242 (251)
T cd03273         184 LLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF--KGSQFIVVSLKEG-MFNNANVLFRTR  242 (251)
T ss_pred             hhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc--CCCEEEEEECCHH-HHHhCCEEEEEE
Confidence               5789999999999999999999999999874  3789999999965 555799998765

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.95  E-value=7.8e-28  Score=221.38  Aligned_cols=163  Identities=23%  Similarity=0.286  Sum_probs=123.6

Q ss_pred             EEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcccccccccccccccCccccccccc
Q 022663           38 GISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFS  117 (294)
Q Consensus        38 ~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (294)
                      +|..||+++++||||-|||||.++|+|.+.|+ +|. .. .            -.++|-+|.+..          ...-+
T Consensus       363 ~i~~gEvigilGpNgiGKTTFvk~LAG~ikPd-eg~-~~-~------------~~vSyKPQyI~~----------~~~gt  417 (591)
T COG1245         363 EIYDGEVIGILGPNGIGKTTFVKLLAGVIKPD-EGS-EE-D------------LKVSYKPQYISP----------DYDGT  417 (591)
T ss_pred             eeecceEEEEECCCCcchHHHHHHHhccccCC-CCC-Cc-c------------ceEeecceeecC----------CCCCc
Confidence            45677899999999999999999999999998 333 10 0            012222221110          01123


Q ss_pred             HHHHhhcCCC---CcHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHH
Q 022663          118 AEHMIFGVEG---SDPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDF  192 (294)
Q Consensus       118 ~~~~~~~~~~---~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~  192 (294)
                      +++++.....   .+.....++.+-|+++  .++++.+|||||.|||+||.+|..+++++|||||++.||.+.|..+.+.
T Consensus       418 V~~~l~~~~~~~~~~s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakv  497 (591)
T COG1245         418 VEDLLRSAIRSAFGSSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKV  497 (591)
T ss_pred             HHHHHHHhhhhhcccchhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHH
Confidence            3333322111   1112234566667775  5889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCcEEEEEeCChhHHHhhhceEEEee
Q 022663          193 FKDECEQRGATIVYATHIFDGLETWATHLAYIQ  225 (294)
Q Consensus       193 l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~  225 (294)
                      |++...+.++|.++|.||+..+.-++||+++.+
T Consensus       498 IRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~  530 (591)
T COG1245         498 IRRFIENNEKTALVVDHDIYMIDYVSDRLIVFE  530 (591)
T ss_pred             HHHHHhhcCceEEEEecceehhhhhhceEEEEe
Confidence            999998889999999999999999999999886

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=99.95  E-value=6.4e-28  Score=224.69  Aligned_cols=195  Identities=23%  Similarity=0.286  Sum_probs=148.9

Q ss_pred             cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663           11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS   90 (294)
Q Consensus        11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~   90 (294)
                      .|.|++.+|+|.|..+. .+++.++++.++.-+.++++|+||+||||++|++.|...|. .|++.+.++.          
T Consensus       360 ~p~l~i~~V~f~y~p~~-y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~-rgi~~~~~r~----------  427 (582)
T KOG0062|consen  360 PPNLRISYVAFEYTPSE-YQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPT-RGIVGRHPRL----------  427 (582)
T ss_pred             CCeeEEEeeeccCCCcc-hhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcc-cceeeecccc----------
Confidence            46899999999997532 27999999999999999999999999999999999977765 5555433321          


Q ss_pred             CCcccccccccccccccCcccccccc-cHHH-HhhcCCCCcHHHHHHHHHHcCCC---cccccccCCHHHHHHHHHHHHH
Q 022663           91 GDLSYLGGSWSKTVGSAGEIPLQGDF-SAEH-MIFGVEGSDPVRRERLIELLDID---LQWRMHKVSDGQRRRVQICMGL  165 (294)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~l~~l~l~---~~~~~~~LSgGqkqRv~lAraL  165 (294)
                       .+.++.|.   .      .....-. ..-+ +.....+...+...+-+..||++   ..+.+..||||||-||++|.+.
T Consensus       428 -ri~~f~Qh---h------vd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~  497 (582)
T KOG0062|consen  428 -RIKYFAQH---H------VDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACT  497 (582)
T ss_pred             -eecchhHh---h------hhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHh
Confidence             12222110   0      1110000 1111 11122333456677888899986   2455889999999999999999


Q ss_pred             ccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEe
Q 022663          166 LHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRR  231 (294)
Q Consensus       166 ~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~  231 (294)
                      ..+|.+|+||||||+||.++...+.+.|+.    ++..||+||||.+++..+|+.+|+.++|++..
T Consensus       498 ~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~----F~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~  559 (582)
T KOG0062|consen  498 WNNPHLLVLDEPTNHLDRDSLGALAKALKN----FNGGVVLVSHDEEFISSLCKELWVVEDGKVTP  559 (582)
T ss_pred             cCCCcEEEecCCCccccHHHHHHHHHHHHh----cCCcEEEEECcHHHHhhcCceeEEEcCCcEEe
Confidence            999999999999999999998888888765    46789999999999999999999999999975

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.95  E-value=3.8e-27  Score=249.40  Aligned_cols=104  Identities=22%  Similarity=0.252  Sum_probs=94.3

Q ss_pred             HHHHHcCCC---cccccccCCHHHHHHHHHHHHHc---cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEe
Q 022663          135 RLIELLDID---LQWRMHKVSDGQRRRVQICMGLL---HPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYAT  208 (294)
Q Consensus       135 ~~l~~l~l~---~~~~~~~LSgGqkqRv~lAraL~---~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivs  208 (294)
                      ++++.+++.   +++++.+|||||+||++||++|+   .+|++|||||||+|||+..+..++++|.++.+ .|.|||+||
T Consensus       791 ~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~-~G~TVIiIs  869 (1809)
T PRK00635        791 HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTH-QGHTVVIIE  869 (1809)
T ss_pred             HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEe
Confidence            466777774   47889999999999999999997   69999999999999999999999999999864 599999999


Q ss_pred             CChhHHHhhhceEEEee------CCeEEecccHHHHHH
Q 022663          209 HIFDGLETWATHLAYIQ------DGELRRAEKLAELDE  240 (294)
Q Consensus       209 Hd~~~~~~~~d~v~~l~------~G~i~~~g~~~~~~~  240 (294)
                      |+++++ ++||++++|.      +|+++..|+++++..
T Consensus       870 Hdl~~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~~  906 (1809)
T PRK00635        870 HNMHVV-KVADYVLELGPEGGNLGGYLLASCSPEELIH  906 (1809)
T ss_pred             CCHHHH-HhCCEEEEEccCCCCCCCEEEEeCCHHHHHh
Confidence            999998 7999999996      789999999999865

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains

Probab=99.95  E-value=9.5e-28  Score=206.87  Aligned_cols=81  Identities=19%  Similarity=0.195  Sum_probs=73.2

Q ss_pred             ccccccCCHHHHHH------HHHHHHHccCCCEEEeeCCCCCCCHHHHH-HHHHHHHHHHHhcCcEEEEEeCChhHHHhh
Q 022663          145 QWRMHKVSDGQRRR------VQICMGLLHPFKVLLLDEITVDLDVVARM-DLLDFFKDECEQRGATIVYATHIFDGLETW  217 (294)
Q Consensus       145 ~~~~~~LSgGqkqR------v~lAraL~~~p~iLlLDEPt~gLD~~~~~-~l~~~l~~~~~~~g~tviivsHd~~~~~~~  217 (294)
                      ++.+.+||+||+||      ++||||++.+|+++||||||++||+..+. .+.++|.++.++.+.|||++||+++++. .
T Consensus       110 ~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~-~  188 (204)
T cd03240         110 LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVD-A  188 (204)
T ss_pred             hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHh-h
Confidence            66789999999996      78999999999999999999999999999 9999999886544789999999999775 6


Q ss_pred             hceEEEeeC
Q 022663          218 ATHLAYIQD  226 (294)
Q Consensus       218 ~d~v~~l~~  226 (294)
                      ||+++.|++
T Consensus       189 ~d~i~~l~~  197 (204)
T cd03240         189 ADHIYRVEK  197 (204)
T ss_pred             CCEEEEEee
Confidence            999999965

The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.

>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.95  E-value=1e-27  Score=212.62  Aligned_cols=78  Identities=13%  Similarity=0.182  Sum_probs=70.2

Q ss_pred             ccccCCHHHHHHHHHHHHHccC----CCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEE
Q 022663          147 RMHKVSDGQRRRVQICMGLLHP----FKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLA  222 (294)
Q Consensus       147 ~~~~LSgGqkqRv~lAraL~~~----p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~  222 (294)
                      ++.+||+|||||++||++++.+    |+++||||||++||+..+..+.++|.++++ .|.+||+|||+.+++ .+||+++
T Consensus       152 ~~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~-~g~~vi~isH~~~~~-~~~d~i~  229 (247)
T cd03275         152 DMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAG-PNFQFIVISLKEEFF-SKADALV  229 (247)
T ss_pred             hHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhcc-CCcEEEEEECCHHHH-hhCCeEE
Confidence            3488999999999999999864    899999999999999999999999998864 489999999997765 6899999


Q ss_pred             EeeC
Q 022663          223 YIQD  226 (294)
Q Consensus       223 ~l~~  226 (294)
                      +|..
T Consensus       230 ~~~~  233 (247)
T cd03275         230 GVYR  233 (247)
T ss_pred             EEEe
Confidence            9874

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=99.95  E-value=1.6e-26  Score=235.02  Aligned_cols=103  Identities=19%  Similarity=0.261  Sum_probs=91.7

Q ss_pred             HHHHHHcCCC---cccccccCCHHHHHHHHHHHHHcc---CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEE
Q 022663          134 ERLIELLDID---LQWRMHKVSDGQRRRVQICMGLLH---PFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYA  207 (294)
Q Consensus       134 ~~~l~~l~l~---~~~~~~~LSgGqkqRv~lAraL~~---~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviiv  207 (294)
                      .++++.+++.   +++++.+|||||+||++||++|+.   +|+++||||||+|||+..+..++++|.++.+ .|.|||+|
T Consensus       809 l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~-~G~TVIvi  887 (924)
T TIGR00630       809 LQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVD-QGNTVVVI  887 (924)
T ss_pred             HHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEE
Confidence            3456667774   477889999999999999999997   5999999999999999999999999999864 58999999


Q ss_pred             eCChhHHHhhhceEEEe------eCCeEEecccHHHH
Q 022663          208 THIFDGLETWATHLAYI------QDGELRRAEKLAEL  238 (294)
Q Consensus       208 sHd~~~~~~~~d~v~~l------~~G~i~~~g~~~~~  238 (294)
                      ||+++++. .||+|++|      ++|+++..|+++++
T Consensus       888 ~H~~~~i~-~aD~ii~Lgp~~G~~gG~iv~~G~~~~l  923 (924)
T TIGR00630       888 EHNLDVIK-TADYIIDLGPEGGDGGGTIVASGTPEEV  923 (924)
T ss_pred             eCCHHHHH-hCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence            99999885 69999999      79999999998764

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.95  E-value=3.4e-27  Score=202.50  Aligned_cols=174  Identities=19%  Similarity=0.177  Sum_probs=113.4

Q ss_pred             eeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcccccccccccccccCcc-
Q 022663           32 FYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEI-  110 (294)
Q Consensus        32 L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  110 (294)
                      ++++++++.+| +.+|+||||||||||+.+|.......  ......+....   .      +...+.. ...+....+. 
T Consensus        12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~--~~~~~r~~~~~---~------~i~~~~~-~~~i~~~~~~~   78 (198)
T cd03276          12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGK--ASDTNRGSSLK---D------LIKDGES-SAKITVTLKNQ   78 (198)
T ss_pred             eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCC--cccccccccHH---H------HhhCCCC-eEEEEEEEEcC
Confidence            57888999887 88999999999999999997321111  00000011000   0      0000000 0001000000 


Q ss_pred             cccccccHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHHH----ccCCCEEEeeCCCCCCCHHHH
Q 022663          111 PLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGL----LHPFKVLLLDEITVDLDVVAR  186 (294)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv~lAraL----~~~p~iLlLDEPt~gLD~~~~  186 (294)
                      ....     +   .........+.++++. .-..++++.+||+|||||++||+|+    +.+|+++||||||++||+..+
T Consensus        79 ~~~~-----~---~~~~~~~~~~~~~l~~-~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~  149 (198)
T cd03276          79 GLDA-----N---PLCVLSQDMARSFLTS-NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNR  149 (198)
T ss_pred             CccC-----C---cCCHHHHHHHHHHhcc-ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHH
Confidence            0000     0   0000112334455555 2235778999999999999999999    689999999999999999999


Q ss_pred             HHHHHHHHHHHHh--cCcEEEEEeCChhHHHhhhceEEEeeCCe
Q 022663          187 MDLLDFFKDECEQ--RGATIVYATHIFDGLETWATHLAYIQDGE  228 (294)
Q Consensus       187 ~~l~~~l~~~~~~--~g~tviivsHd~~~~~~~~d~v~~l~~G~  228 (294)
                      ..+.++|.+++++  .+.|||++||+++++..+ |+|.+|..++
T Consensus       150 ~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~-d~v~~~~~~~  192 (198)
T cd03276         150 KISTDLLVKEAKKQPGRQFIFITPQDISGLASS-DDVKVFRMKD  192 (198)
T ss_pred             HHHHHHHHHHHhcCCCcEEEEEECCcccccccc-cceeEEEecC
Confidence            9999999987654  236899999999999986 9999998753

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=99.95  E-value=1.8e-26  Score=222.22  Aligned_cols=187  Identities=23%  Similarity=0.308  Sum_probs=137.4

Q ss_pred             cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663           11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS   90 (294)
Q Consensus        11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~   90 (294)
                      ...|+++||+..-++  +.+.+++++|+|++||.+.|.||||||||||+|+|+|+-+. ++|.+......          
T Consensus       390 ~~~i~~~nl~l~~p~--~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~-g~G~I~~P~~~----------  456 (604)
T COG4178         390 DHGITLENLSLRTPD--GQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPW-GSGRISMPADS----------  456 (604)
T ss_pred             cceeEEeeeeEECCC--CCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCcc-CCCceecCCCC----------
Confidence            468999999999876  35799999999999999999999999999999999998765 47776543110          


Q ss_pred             CCcccccccccccccccCcccccccccH-HHHhhcCCC--CcHHHHHHHHHHcCCC-----c---ccccccCCHHHHHHH
Q 022663           91 GDLSYLGGSWSKTVGSAGEIPLQGDFSA-EHMIFGVEG--SDPVRRERLIELLDID-----L---QWRMHKVSDGQRRRV  159 (294)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~l~~l~l~-----~---~~~~~~LSgGqkqRv  159 (294)
                       .+.+.+           +-|.++.-+- +.+.+....  ...+...+++..+++.     +   ++--..||+|||||+
T Consensus       457 -~~lflp-----------Q~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRl  524 (604)
T COG4178         457 -ALLFLP-----------QRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRL  524 (604)
T ss_pred             -ceEEec-----------CCCCCCCccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHH
Confidence             112222           2121111122 222232211  3445566677777763     1   122346999999999


Q ss_pred             HHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEee
Q 022663          160 QICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQ  225 (294)
Q Consensus       160 ~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~  225 (294)
                      ++||.|+++|++++|||-|++||+.+...+++++++.+  .+.|||-|+|.... ..+.++.+.+.
T Consensus       525 afARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~l--p~~tvISV~Hr~tl-~~~h~~~l~l~  587 (604)
T COG4178         525 AFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL--PDATVISVGHRPTL-WNFHSRQLELL  587 (604)
T ss_pred             HHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhC--CCCEEEEeccchhh-HHHHhhheeec
Confidence            99999999999999999999999999999999998755  47999999999875 44666665554

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=99.93  E-value=7.2e-26  Score=194.59  Aligned_cols=146  Identities=21%  Similarity=0.300  Sum_probs=106.6

Q ss_pred             eeeeeEEEeCCC-EEEEECCCCCcHHHHHHHHh--------CCcccCCCceEEecCCcccccccccccCCcccccccccc
Q 022663           32 FYDFNLGISPGS-RCLLVGANGSGKTTLLKILA--------GKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSK  102 (294)
Q Consensus        32 L~~vsl~i~~Ge-~~~liG~NGsGKSTLlk~i~--------G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (294)
                      +-++||++.+|+ +++|+||||||||||+|+|+        |...|.....                  .+.++.+.   
T Consensus        17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~------------------~~~~~~~~---   75 (200)
T cd03280          17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGS------------------SLPVFENI---   75 (200)
T ss_pred             eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccc------------------cCcCccEE---
Confidence            458999999996 79999999999999999998        4322210000                  00000000   


Q ss_pred             cccccCcccccccccHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCC
Q 022663          103 TVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLD  182 (294)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD  182 (294)
                                +..       ++    ..+           ..+...+.+|+||+|++.|+++ +.+|+++|+|||++|||
T Consensus        76 ----------~~~-------lg----~~~-----------~l~~~~s~fs~g~~~~~~i~~~-~~~p~llllDEp~~glD  122 (200)
T cd03280          76 ----------FAD-------IG----DEQ-----------SIEQSLSTFSSHMKNIARILQH-ADPDSLVLLDELGSGTD  122 (200)
T ss_pred             ----------EEe-------cC----chh-----------hhhcCcchHHHHHHHHHHHHHh-CCCCcEEEEcCCCCCCC
Confidence                      000       00    000           1234567899999999999988 48999999999999999


Q ss_pred             HHHHHHHHH-HHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecc
Q 022663          183 VVARMDLLD-FFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAE  233 (294)
Q Consensus       183 ~~~~~~l~~-~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g  233 (294)
                      +..+..+.. ++.++. +.+.++|++||+. .+..+||+++.|++|++..++
T Consensus       123 ~~~~~~i~~~~l~~l~-~~~~~vi~~tH~~-~l~~~~d~~~~l~~g~l~~~~  172 (200)
T cd03280         123 PVEGAALAIAILEELL-ERGALVIATTHYG-ELKAYAYKREGVENASMEFDP  172 (200)
T ss_pred             HHHHHHHHHHHHHHHH-hcCCEEEEECCHH-HHHHHHhcCCCeEEEEEEEec
Confidence            999999865 566654 4589999999995 566899999999999998763

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.93  E-value=7.2e-25  Score=204.17  Aligned_cols=216  Identities=17%  Similarity=0.223  Sum_probs=164.4

Q ss_pred             cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccc-c-ccccc
Q 022663           11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSF-H-DTQLV   88 (294)
Q Consensus        11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~-~-~~~~~   88 (294)
                      .+.|++++|+..-..  +.+.+++|||+|.+|||+||.|-.|-|-+.|+.+|+|+.++. .|.+.++|.+.. . .....
T Consensus       255 ~~vL~V~~L~v~~~~--~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~-~G~I~l~G~~v~~~~~~~~~  331 (501)
T COG3845         255 EVVLEVEDLSVKDRR--GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPA-SGRILLNGKDVLGRLSPRER  331 (501)
T ss_pred             CeEEEEeeeEeecCC--CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccC-CceEEECCEeccccCCHHHH
Confidence            457999999997543  246799999999999999999999999999999999998776 599999998741 1 11111


Q ss_pred             ccCCcccccccccccccccCcccccccccH-HHHhhcCC--------C-CcH----HHHHHHHHHcCCC---cccccccC
Q 022663           89 CSGDLSYLGGSWSKTVGSAGEIPLQGDFSA-EHMIFGVE--------G-SDP----VRRERLIELLDID---LQWRMHKV  151 (294)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--------~-~~~----~~~~~~l~~l~l~---~~~~~~~L  151 (294)
                      ....+.+++.+... .+      +...++. +|..+...        . .+.    ....++++.|++.   ...+...|
T Consensus       332 r~~G~~~VPedR~~-~G------lv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~L  404 (501)
T COG3845         332 RRLGLAYVPEDRHG-HG------LVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSL  404 (501)
T ss_pred             HhcCCccCChhhcc-Cc------cccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhc
Confidence            11233444333211 11      1122222 22221110        0 111    2345778888874   45678899


Q ss_pred             CHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEe
Q 022663          152 SDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRR  231 (294)
Q Consensus       152 SgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~  231 (294)
                      |||.+||+-+||-|..+|++||+.+||.|||..+.+.+.+.|.+.. +.|++|+++|-|++++..+||||.+|.+|+++.
T Consensus       405 SGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r-~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~  483 (501)
T COG3845         405 SGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELR-DAGKAVLLISEDLDEILELSDRIAVIYEGRIVG  483 (501)
T ss_pred             CCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHH-hcCCEEEEEehhHHHHHHhhheeeeeeCCceec
Confidence            9999999999999999999999999999999999999999999876 469999999999999999999999999999998


Q ss_pred             cccHHH
Q 022663          232 AEKLAE  237 (294)
Q Consensus       232 ~g~~~~  237 (294)
                      ..++++
T Consensus       484 ~~~~~~  489 (501)
T COG3845         484 IVPPEE  489 (501)
T ss_pred             cccccc
Confidence            877765

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.92  E-value=1.4e-25  Score=228.13  Aligned_cols=195  Identities=24%  Similarity=0.320  Sum_probs=146.9

Q ss_pred             CCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccC-CCceEEecCCcccccccccccCCcccccccccccccc
Q 022663           28 KPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVG-GRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGS  106 (294)
Q Consensus        28 ~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~-~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (294)
                      .+.+|+||+=-+.||-.+||+|+|||||||||++|+|-..-. -.|.+.++|.+..+              +.+.+..++
T Consensus       803 ~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q--------------~tF~R~~GY  868 (1391)
T KOG0065|consen  803 TRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ--------------ETFARVSGY  868 (1391)
T ss_pred             ceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch--------------hhhccccce
Confidence            467999999999999999999999999999999999943210 14666777764321              122334455


Q ss_pred             cCccc-ccccccHHHH-hh----cCC-CCc---H-HHHHHHHHHcCCC--cccccc----cCCHHHHHHHHHHHHHccCC
Q 022663          107 AGEIP-LQGDFSAEHM-IF----GVE-GSD---P-VRRERLIELLDID--LQWRMH----KVSDGQRRRVQICMGLLHPF  169 (294)
Q Consensus       107 ~~~~~-~~~~~~~~~~-~~----~~~-~~~---~-~~~~~~l~~l~l~--~~~~~~----~LSgGqkqRv~lAraL~~~p  169 (294)
                      +.+.. ..+..|++|- .+    ... ..+   + +.++++++.++++  .+.-++    -||..||+|+.||--|+.+|
T Consensus       869 vqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P  948 (1391)
T KOG0065|consen  869 VEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANP  948 (1391)
T ss_pred             eecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCC
Confidence            54422 2355565543 22    111 111   2 3467889999886  344444    49999999999999999999


Q ss_pred             -CEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChh-HHHhhhceEEEeeC-CeEEecccHHH
Q 022663          170 -KVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFD-GLETWATHLAYIQD-GELRRAEKLAE  237 (294)
Q Consensus       170 -~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~-~~~~~~d~v~~l~~-G~i~~~g~~~~  237 (294)
                       .||+|||||||||..+...+++++++++. .|.||+++-|.+. .+.+..|++++|++ |+.++.|+..+
T Consensus       949 ~~ilFLDEPTSGLDsqaA~~i~~~lrkla~-tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen  949 SSILFLDEPTSGLDSQAAAIVMRFLRKLAD-TGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGE 1018 (1391)
T ss_pred             ceeEEecCCCCCccHHHHHHHHHHHHHHHh-cCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCccc
Confidence             99999999999999999999999999986 6999999999985 35566899999986 67888887643

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=99.92  E-value=2e-25  Score=204.74  Aligned_cols=210  Identities=27%  Similarity=0.314  Sum_probs=142.3

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhC--CcccCCCceEEecCCccccccccccc
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAG--KHMVGGRDVVQVLNRSSFHDTQLVCS   90 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G--~~~~~~~g~i~~~~~~~~~~~~~~~~   90 (294)
                      -|.++|.+.+-.+   +.++.+.|+.|-.|..+|||||||-||||||+.|+.  +..|+ ...+.++.+........   
T Consensus       264 DIKiEnF~ISA~G---k~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPp-nIDvLlCEQEvvad~t~---  336 (807)
T KOG0066|consen  264 DIKIENFDISAQG---KLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPP-NIDVLLCEQEVVADSTS---  336 (807)
T ss_pred             cceeeeeeeeccc---ceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCC-CCceEeeeeeeeecCcH---
Confidence            5888998888755   578999999999999999999999999999999985  22233 22222222221100000   


Q ss_pred             CCcc-ccccccccccccc-------CcccccccccHHHHh----h---cC-CCCcHHHHHHHHHHcCCC---cccccccC
Q 022663           91 GDLS-YLGGSWSKTVGSA-------GEIPLQGDFSAEHMI----F---GV-EGSDPVRRERLIELLDID---LQWRMHKV  151 (294)
Q Consensus        91 ~~~~-~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~----~---~~-~~~~~~~~~~~l~~l~l~---~~~~~~~L  151 (294)
                       .+. .+.... ......       .++ ..+..++.+.+    .   .. ......+..+++..|+++   .+++...+
T Consensus       337 -Ai~tvl~aD~-kRl~lLeee~~L~~q~-e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kF  413 (807)
T KOG0066|consen  337 -AIDTVLKADK-KRLALLEEEAKLMSQI-EEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKF  413 (807)
T ss_pred             -HHHHHHHhhH-HHHHHHHHHHHHHHHH-HcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCcccc
Confidence             000 000000 000000       000 01222221111    0   00 011234567788888886   36777899


Q ss_pred             CHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEe
Q 022663          152 SDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRR  231 (294)
Q Consensus       152 SgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~  231 (294)
                      |||.|.||+|||||...|-+|+|||||++||.....++-++|..|    .+|++|||||-.++..+|..|+.|++.++.+
T Consensus       414 SGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgW----kKTLLIVSHDQgFLD~VCtdIIHLD~qkLhy  489 (807)
T KOG0066|consen  414 SGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQGFLDSVCTDIIHLDNQKLHY  489 (807)
T ss_pred             CCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhh----hheeEEEecccchHHHHHHHHhhhhhhhhhh
Confidence            999999999999999999999999999999999998888888765    5699999999999999999999999988754


Q ss_pred             -cccHH
Q 022663          232 -AEKLA  236 (294)
Q Consensus       232 -~g~~~  236 (294)
                       .|.+.
T Consensus       490 YrGNY~  495 (807)
T KOG0066|consen  490 YRGNYT  495 (807)
T ss_pred             hcchHH
Confidence             45544

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.91  E-value=1.7e-24  Score=199.42  Aligned_cols=198  Identities=22%  Similarity=0.334  Sum_probs=129.9

Q ss_pred             ceEEEcCCCCCCCceeeeeE-EEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC-c-c
Q 022663           18 GMQFSYEGNDKPPLFYDFNL-GISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD-L-S   94 (294)
Q Consensus        18 ~ls~~y~~~~~~~iL~~vsl-~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~-~-~   94 (294)
                      ++..+|+.+    -++=..+ ...+|.++||+||||-||||-+|+|+|.+.|. -|..  .+.+.+......+++. + .
T Consensus        79 e~vHRYg~N----gFkL~~LP~pr~G~V~GilG~NGiGKsTalkILaGel~PN-LG~~--~~pp~wdeVi~~FrGtELq~  151 (591)
T COG1245          79 EVVHRYGVN----GFKLYRLPTPRPGKVVGILGPNGIGKSTALKILAGELKPN-LGRY--EDPPSWDEVIKRFRGTELQN  151 (591)
T ss_pred             cceeeccCC----ceEEecCCCCCCCcEEEEEcCCCccHHHHHHHHhCccccC-CCCC--CCCCCHHHHHHHhhhhHHHH
Confidence            456788642    1222333 45689999999999999999999999988875 3321  1111111000000000 0 0


Q ss_pred             cccccccccccc---cCcccccccc---cHHHHhhcCCCCcHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHHHc
Q 022663           95 YLGGSWSKTVGS---AGEIPLQGDF---SAEHMIFGVEGSDPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMGLL  166 (294)
Q Consensus        95 ~~~~~~~~~~~~---~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL~  166 (294)
                      |+.......+..   .+++...+..   +..+++-..  ...-..+++.+.|++.  +++.+++|||||.||++||.+++
T Consensus       152 YF~~l~~g~~r~v~K~QYVd~iPk~~KG~v~elLk~~--de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~  229 (591)
T COG1245         152 YFKKLYEGELRAVHKPQYVDLIPKVVKGKVGELLKKV--DERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALL  229 (591)
T ss_pred             HHHHHHcCCcceecchHHHHHHHHHhcchHHHHHHhh--hhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHh
Confidence            000000000000   0000000000   111111110  0112456788888886  68999999999999999999999


Q ss_pred             cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEee
Q 022663          167 HPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQ  225 (294)
Q Consensus       167 ~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~  225 (294)
                      ++++++++||||+-||...|-...+.++++++. +++||+|.||+..+.-++|-|.++.
T Consensus       230 rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~-~k~ViVVEHDLavLD~lsD~vhI~Y  287 (591)
T COG1245         230 RDADVYFFDEPSSYLDIRQRLNAARVIRELAED-GKYVIVVEHDLAVLDYLSDFVHILY  287 (591)
T ss_pred             ccCCEEEEcCCcccccHHHHHHHHHHHHHHhcc-CCeEEEEechHHHHHHhhheeEEEe
Confidence            999999999999999999999999999999865 8999999999999999999998886

>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.91  E-value=3e-24  Score=186.16  Aligned_cols=84  Identities=17%  Similarity=0.221  Sum_probs=72.4

Q ss_pred             ccccccCCHHHHHHHHHHHHH----ccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcC-cEEEEEeCChhHHHhhhc
Q 022663          145 QWRMHKVSDGQRRRVQICMGL----LHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRG-ATIVYATHIFDGLETWAT  219 (294)
Q Consensus       145 ~~~~~~LSgGqkqRv~lAraL----~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g-~tviivsHd~~~~~~~~d  219 (294)
                      +..+.+||+|||||+.+|++|    +.+|+++|+||||++||+..+..+++.|.++.++.| .|+|++||++.....+||
T Consensus       121 ~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~~  200 (213)
T cd03277         121 ELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNYHE  200 (213)
T ss_pred             ccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCcccC
Confidence            456789999999999877554    589999999999999999999999999998865434 589999999988888876


Q ss_pred             --eEEEeeCCe
Q 022663          220 --HLAYIQDGE  228 (294)
Q Consensus       220 --~v~~l~~G~  228 (294)
                        +|++|.+|+
T Consensus       201 ~~~v~~l~~g~  211 (213)
T cd03277         201 KMTVLCVYNGP  211 (213)
T ss_pred             ceEEEEEecCc
Confidence              788888886

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]

Probab=99.90  E-value=1.7e-22  Score=190.92  Aligned_cols=190  Identities=21%  Similarity=0.276  Sum_probs=134.2

Q ss_pred             ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663           12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG   91 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~   91 (294)
                      .+|++++|+..-+.+ +..+++|+||+|++|+-+.|.||||||||+|||+++|+-+. .+|.+.......        ..
T Consensus       432 n~i~~e~v~l~tPt~-g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~-~~G~l~k~~~~~--------~~  501 (659)
T KOG0060|consen  432 NAIEFEEVSLSTPTN-GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPS-TGGKLTKPTDGG--------PK  501 (659)
T ss_pred             ceEEeeeeeecCCCC-CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhccccc-CCCeEEecccCC--------CC
Confidence            479999999998764 45688999999999999999999999999999999998654 377765432211        01


Q ss_pred             CcccccccccccccccCcccccccccHHHHhhcC-------CCCcHHHHHHHHHHcCCC--------cc-----cccccC
Q 022663           92 DLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGV-------EGSDPVRRERLIELLDID--------LQ-----WRMHKV  151 (294)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~~l~l~--------~~-----~~~~~L  151 (294)
                      ++.+++|...-..+..          .+++++..       ...+.++..+.++.+++.        .+     .-...|
T Consensus       502 ~lfflPQrPYmt~GTL----------RdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvL  571 (659)
T KOG0060|consen  502 DLFFLPQRPYMTLGTL----------RDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVL  571 (659)
T ss_pred             ceEEecCCCCccccch----------hheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhc
Confidence            2333333211111111          12222221       112334455555554431        12     123579


Q ss_pred             CHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeC
Q 022663          152 SDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQD  226 (294)
Q Consensus       152 SgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~  226 (294)
                      |+||+||+++||.+.++|++-||||-|+++|.+....+++.++    +.|+|.|-|+|...+ .++-|.++-|+.
T Consensus       572 S~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r----~~giT~iSVgHRkSL-~kfHd~~L~~~g  641 (659)
T KOG0060|consen  572 SPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCR----EMGITFISVGHRKSL-WKFHDYVLRMDG  641 (659)
T ss_pred             CHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHH----HcCCeEEEeccHHHH-HhhhhEEEEecC
Confidence            9999999999999999999999999999999988777776554    569999999999885 457798888875

>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms

Probab=99.89  E-value=1.6e-22  Score=170.69  Aligned_cols=74  Identities=22%  Similarity=0.258  Sum_probs=68.1

Q ss_pred             CCHHHHHHHHHHHHHc----cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeC
Q 022663          151 VSDGQRRRVQICMGLL----HPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQD  226 (294)
Q Consensus       151 LSgGqkqRv~lAraL~----~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~  226 (294)
                      ||+||+||++|||+++    .+|+++|+|||+++||+..+..+.+.|.++.+ .|.|+|++||+.+.+. .+|+++.+.+
T Consensus        95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~-~g~tiIiiSH~~~~~~-~adrvi~i~~  172 (178)
T cd03239          95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAK-HTSQFIVITLKKEMFE-NADKLIGVLF  172 (178)
T ss_pred             CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEECCHHHHh-hCCeEEEEEE
Confidence            9999999999999996    69999999999999999999999999998864 4789999999998775 7999999875

SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.

>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

Probab=99.89  E-value=1.3e-22  Score=185.16  Aligned_cols=181  Identities=22%  Similarity=0.324  Sum_probs=133.5

Q ss_pred             CCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCc--------ccCCCceEEecCCcccccccccccCCcccccccc
Q 022663           29 PPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKH--------MVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSW  100 (294)
Q Consensus        29 ~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~--------~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (294)
                      ..+|+|+||+|++|++++|+|+|||||||||++|+|..        .|+ +|.+.+......           ...+.. 
T Consensus       396 ryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~-sg~v~vp~nt~~-----------a~iPge-  462 (593)
T COG2401         396 RYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPD-SGKVEVPKNTVS-----------ALIPGE-  462 (593)
T ss_pred             eeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCC-CCceeccccchh-----------hccCcc-
Confidence            35899999999999999999999999999999999843        232 344332111100           000000 


Q ss_pred             cccccccCcccccccccHHHHhhcCCCCcHHHHHHHHHHcCCC----cccccccCCHHHHHHHHHHHHHccCCCEEEeeC
Q 022663          101 SKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDID----LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDE  176 (294)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~----~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDE  176 (294)
                              .-+.++..+..+.++.. ..+.....+++...++.    ..+++++||.|||.|+.||++++.+|.+++.||
T Consensus       463 --------~Ep~f~~~tilehl~s~-tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDE  533 (593)
T COG2401         463 --------YEPEFGEVTILEHLRSK-TGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDE  533 (593)
T ss_pred             --------cccccCchhHHHHHhhc-cCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhh
Confidence                    00111111222212211 12323345677777774    256789999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhh-hceEEEeeCCeEEe
Q 022663          177 ITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETW-ATHLAYIQDGELRR  231 (294)
Q Consensus       177 Pt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~-~d~v~~l~~G~i~~  231 (294)
                      -.|+||+.+...+..-|.+++++.|.|++++||+.++...+ -|+++.+.-|+...
T Consensus       534 F~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~li~vgYg~v~~  589 (593)
T COG2401         534 FAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDTLILVGYGKVPV  589 (593)
T ss_pred             hhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCceeEEeecccccc
Confidence            99999999999999999999999999999999999999998 69999988776543

>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes

Probab=99.88  E-value=2e-22  Score=175.79  Aligned_cols=154  Identities=14%  Similarity=0.154  Sum_probs=107.5

Q ss_pred             CCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcccccccccccccccC
Q 022663           29 PPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAG  108 (294)
Q Consensus        29 ~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (294)
                      ..+.+|+++++.++++++|.||||+|||||+++|+=.......|.                     +.+... .      
T Consensus        17 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~la~~g~---------------------~vpa~~-~------   68 (222)
T cd03285          17 AFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVIVLMAQIGC---------------------FVPCDS-A------   68 (222)
T ss_pred             CeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHHHHHHHhCC---------------------CcCccc-E------
Confidence            468999999999999999999999999999999972100000000                     000000 0      


Q ss_pred             cccccccccHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHHH--ccCCCEEEeeCC---CCCCCH
Q 022663          109 EIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGL--LHPFKVLLLDEI---TVDLDV  183 (294)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv~lAraL--~~~p~iLlLDEP---t~gLD~  183 (294)
                      ..+                    ..++++..+++. +.....+|.|+++++.+++++  +.+|+++|||||   |++||+
T Consensus        69 ~~~--------------------~~~~il~~~~l~-d~~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~  127 (222)
T cd03285          69 DIP--------------------IVDCILARVGAS-DSQLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDG  127 (222)
T ss_pred             EEe--------------------ccceeEeeeccc-cchhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHH
Confidence            000                    011122223322 122567999999999999999  899999999999   999999


Q ss_pred             HHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEeccc
Q 022663          184 VARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEK  234 (294)
Q Consensus       184 ~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~  234 (294)
                      ......  .+..+.++.+.++|++||+ .++.++||++..+++|++.....
T Consensus       128 ~~~~~~--il~~l~~~~~~~vlisTH~-~el~~~~~~~~~i~~g~~~~~~~  175 (222)
T cd03285         128 FGLAWA--IAEYIATQIKCFCLFATHF-HELTALADEVPNVKNLHVTALTD  175 (222)
T ss_pred             HHHHHH--HHHHHHhcCCCeEEEEech-HHHHHHhhcCCCeEEEEEEEEEe
Confidence            887543  3333433347899999996 66788999999999999876543

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport

Probab=99.88  E-value=3.5e-22  Score=166.10  Aligned_cols=75  Identities=25%  Similarity=0.336  Sum_probs=68.8

Q ss_pred             cCCHHHHHHHHHHHHHcc----CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEee
Q 022663          150 KVSDGQRRRVQICMGLLH----PFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQ  225 (294)
Q Consensus       150 ~LSgGqkqRv~lAraL~~----~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~  225 (294)
                      +||+||+||++||++|+.    +|+++|+|||++|+|+..+..+.+.+.++..+ +.++|++||+.+++. .+|+++.|.
T Consensus        77 ~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~-~~~vii~TH~~~~~~-~~d~~~~l~  154 (162)
T cd03227          77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVK-GAQVIVITHLPELAE-LADKLIHIK  154 (162)
T ss_pred             eccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHH-hhhhEEEEE
Confidence            499999999999999986    78999999999999999999999999988765 889999999999876 589999986


Q ss_pred             C
Q 022663          226 D  226 (294)
Q Consensus       226 ~  226 (294)
                      .
T Consensus       155 ~  155 (162)
T cd03227         155 K  155 (162)
T ss_pred             E
Confidence            4

These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.

>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules

Probab=99.87  E-value=7.5e-22  Score=177.79  Aligned_cols=77  Identities=14%  Similarity=0.194  Sum_probs=68.8

Q ss_pred             ccCCHHHHHHHHHHHHHcc----CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEe
Q 022663          149 HKVSDGQRRRVQICMGLLH----PFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYI  224 (294)
Q Consensus       149 ~~LSgGqkqRv~lAraL~~----~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l  224 (294)
                      ..|||||+||++||++++.    +|+++||||||++||+..+..+.+.|.++.+  +.|+|++||++.. ..+||+++.|
T Consensus       169 ~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~--~~tii~isH~~~~-~~~~d~~~~l  245 (276)
T cd03241         169 KIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR--SHQVLCITHLPQV-AAMADNHFLV  245 (276)
T ss_pred             hhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC--CCEEEEEechHHH-HHhcCcEEEE
Confidence            3599999999999987654    9999999999999999999999999998753  6899999999985 4689999999


Q ss_pred             eCCe
Q 022663          225 QDGE  228 (294)
Q Consensus       225 ~~G~  228 (294)
                      .+|.
T Consensus       246 ~~~~  249 (276)
T cd03241         246 EKEV  249 (276)
T ss_pred             EEec
Confidence            9864

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=99.87  E-value=1e-21  Score=169.00  Aligned_cols=155  Identities=14%  Similarity=0.198  Sum_probs=101.6

Q ss_pred             eeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcccccccccccccccCcccc
Q 022663           33 YDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPL  112 (294)
Q Consensus        33 ~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (294)
                      -..++++.+|++++|+||||||||||||+|++.......|....                     .. ...+++..+  .
T Consensus        20 ~~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~---------------------~~-~~~i~~~dq--i   75 (202)
T cd03243          20 VPNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVP---------------------AE-SASIPLVDR--I   75 (202)
T ss_pred             EeeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCcc---------------------cc-ccccCCcCE--E
Confidence            34566777999999999999999999999996332111111100                     00 000000000  0


Q ss_pred             cccccHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHH
Q 022663          113 QGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDF  192 (294)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~  192 (294)
                      +..+...         +             ......+.+|.+++| +..+.+++.+|+++|+||||+|||+..+..+...
T Consensus        76 ~~~~~~~---------d-------------~i~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~  132 (202)
T cd03243          76 FTRIGAE---------D-------------SISDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYA  132 (202)
T ss_pred             EEEecCc---------c-------------cccCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHH
Confidence            0000000         0             112345567777776 6666788899999999999999999988887654


Q ss_pred             HHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccH
Q 022663          193 FKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKL  235 (294)
Q Consensus       193 l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~  235 (294)
                      +.+...+.+.++|++||+.+++. .++++..+.++++...+..
T Consensus       133 ll~~l~~~~~~vi~~tH~~~~~~-~~~~~~~l~~~~~~~~~~~  174 (202)
T cd03243         133 VLEHLLEKGCRTLFATHFHELAD-LPEQVPGVKNLHMEELITT  174 (202)
T ss_pred             HHHHHHhcCCeEEEECChHHHHH-HhhcCCCeEEEEEEEEecC
Confidence            33333456899999999988766 6889999999998877654

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.86  E-value=1.2e-20  Score=200.44  Aligned_cols=106  Identities=20%  Similarity=0.236  Sum_probs=93.4

Q ss_pred             HHHHcCCC---cccccccCCHHHHHHHHHHHHHccC---CCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeC
Q 022663          136 LIELLDID---LQWRMHKVSDGQRRRVQICMGLLHP---FKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATH  209 (294)
Q Consensus       136 ~l~~l~l~---~~~~~~~LSgGqkqRv~lAraL~~~---p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsH  209 (294)
                      .+..+|+.   +.++..+|||||.||+-||.-|..+   +.++||||||.||++...+.+++.|.++.. .|.|||+|+|
T Consensus      1682 ~L~~vGLgYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L~~-~g~tvivieH 1760 (1809)
T PRK00635       1682 ALIDNGLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVS-LGHSVIYIDH 1760 (1809)
T ss_pred             HHHHcCCCeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHh-cCCeEEEEeC
Confidence            44555653   6888999999999999999999875   799999999999999999999999999874 6999999999


Q ss_pred             ChhHHHhhhceEEEee------CCeEEecccHHHHHHhhh
Q 022663          210 IFDGLETWATHLAYIQ------DGELRRAEKLAELDELRN  243 (294)
Q Consensus       210 d~~~~~~~~d~v~~l~------~G~i~~~g~~~~~~~~~~  243 (294)
                      |++.+.. ||+|+-|-      .|+|++.|+|+++.+.+.
T Consensus      1761 ~~~~i~~-aD~iidlgp~gG~~GG~iva~Gtp~~i~~~~~ 1799 (1809)
T PRK00635       1761 DPALLKQ-ADYLIEMGPGSGKTGGKILFSGPPKDISASKD 1799 (1809)
T ss_pred             CHHHHHh-CCEEEEcCCCcccCCCEEEEEeCHHHHhhCCC
Confidence            9998876 99999995      478999999999976543

>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]

Probab=99.86  E-value=4e-21  Score=179.77  Aligned_cols=190  Identities=21%  Similarity=0.297  Sum_probs=127.7

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      -|.++|+-.--+.  ...++..++|+|++|-.+.|+||||||||+|+|+|.|+-+.. .|......           ...
T Consensus       481 gI~lenIpvItP~--~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy-~g~L~~P~-----------~~~  546 (728)
T KOG0064|consen  481 GIILENIPVITPA--GDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVY-NGLLSIPR-----------PNN  546 (728)
T ss_pred             ceEEecCceeccC--cceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCccc-CCeeecCC-----------Ccc
Confidence            4788888887765  356889999999999999999999999999999999987553 55443221           122


Q ss_pred             cccccccccccccccCcccccccccHHHHhhcCCCCcHHHHHHHHHHcCCC----------c-ccccccCCHHHHHHHHH
Q 022663           93 LSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDID----------L-QWRMHKVSDGQRRRVQI  161 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~----------~-~~~~~~LSgGqkqRv~l  161 (294)
                      +.|.+|...-..+...+..++++. .+++..  .+........+++.+.++          . ..--..||||||||+++
T Consensus       547 mFYIPQRPYms~gtlRDQIIYPdS-~e~~~~--kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~m  623 (728)
T KOG0064|consen  547 IFYIPQRPYMSGGTLRDQIIYPDS-SEQMKR--KGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGM  623 (728)
T ss_pred             eEeccCCCccCcCcccceeecCCc-HHHHHh--cCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHH
Confidence            344443221112222111223332 222211  122233344455444432          1 01123699999999999


Q ss_pred             HHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEe
Q 022663          162 CMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYI  224 (294)
Q Consensus       162 AraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l  224 (294)
                      ||.+.++|++-+|||-||+..++....+++..+    ..|.++|-|||.+.... +-.+++-.
T Consensus       624 ARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak----~~gi~llsithrpslwk-~h~~ll~~  681 (728)
T KOG0064|consen  624 ARMFYHRPKYALLDECTSAVSIDVEGKIFQAAK----DAGISLLSITHRPSLWK-YHTHLLEF  681 (728)
T ss_pred             HHHHhcCcchhhhhhhhcccccchHHHHHHHHH----hcCceEEEeecCccHHH-HHHHHHhc
Confidence            999999999999999999999988888887665    46999999999998664 45555554

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=99.84  E-value=2.7e-20  Score=159.80  Aligned_cols=57  Identities=16%  Similarity=0.076  Sum_probs=45.8

Q ss_pred             cCCCEEEeeCCCCCCCHHHHHHHHH-HHHHHHHhcCcEEEEEeCChhHHHhh--hceEEEe
Q 022663          167 HPFKVLLLDEITVDLDVVARMDLLD-FFKDECEQRGATIVYATHIFDGLETW--ATHLAYI  224 (294)
Q Consensus       167 ~~p~iLlLDEPt~gLD~~~~~~l~~-~l~~~~~~~g~tviivsHd~~~~~~~--~d~v~~l  224 (294)
                      .+|+++|+||||+|+|+..+..+.. ++..+. +.+.++|++||+++++...  .++|-.+
T Consensus       104 ~~p~llllDEp~~glD~~~~~~l~~~ll~~l~-~~~~tiiivTH~~~~~~~~~~~~~v~~~  163 (199)
T cd03283         104 GEPVLFLLDEIFKGTNSRERQAASAAVLKFLK-NKNTIGIISTHDLELADLLDLDSAVRNY  163 (199)
T ss_pred             CCCeEEEEecccCCCCHHHHHHHHHHHHHHHH-HCCCEEEEEcCcHHHHHhhhcCCCeEEE
Confidence            5999999999999999999987754 676665 4589999999999988765  4444443

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=99.84  E-value=9e-20  Score=178.18  Aligned_cols=97  Identities=22%  Similarity=0.325  Sum_probs=88.2

Q ss_pred             cccccccCCHHHHHHHHHHHHHccCC---CEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhce
Q 022663          144 LQWRMHKVSDGQRRRVQICMGLLHPF---KVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATH  220 (294)
Q Consensus       144 ~~~~~~~LSgGqkqRv~lAraL~~~p---~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~  220 (294)
                      +.++..+|||||.|||-||.-|....   -++||||||+||-..-.+++++.|.++.. .|-|||+|.|+++.+. .||+
T Consensus       816 LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd-~GnTViVIEHNLdVIk-~AD~  893 (935)
T COG0178         816 LGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVD-KGNTVIVIEHNLDVIK-TADW  893 (935)
T ss_pred             cCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecccceEe-ecCE
Confidence            67888999999999999999998877   99999999999999999999999999975 5999999999999765 6999


Q ss_pred             EEEee------CCeEEecccHHHHHHhh
Q 022663          221 LAYIQ------DGELRRAEKLAELDELR  242 (294)
Q Consensus       221 v~~l~------~G~i~~~g~~~~~~~~~  242 (294)
                      |+-|-      .|+|++.|+|+++.+..
T Consensus       894 IIDLGPeGG~~GG~iva~GTPeeva~~~  921 (935)
T COG0178         894 IIDLGPEGGDGGGEIVASGTPEEVAKVK  921 (935)
T ss_pred             EEEcCCCCCCCCceEEEecCHHHHHhCc
Confidence            99884      57999999999998743

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes

Probab=99.84  E-value=3e-20  Score=159.94  Aligned_cols=141  Identities=16%  Similarity=0.184  Sum_probs=96.9

Q ss_pred             CCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcccccccccccccccC
Q 022663           29 PPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAG  108 (294)
Q Consensus        29 ~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (294)
                      ..+.+|++|++.+|++++|+||||+|||||+|+|+++......|.                     +.+.          
T Consensus        16 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~la~~G~---------------------~vpa----------   64 (204)
T cd03282          16 NFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAIMAQIGC---------------------FVPA----------   64 (204)
T ss_pred             cEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHHHHHcCC---------------------Ccch----------
Confidence            478999999999999999999999999999999998532110000                     0000          


Q ss_pred             cccccccccHHHHhhcCCCCcHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHH
Q 022663          109 EIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVAR  186 (294)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~  186 (294)
                         ....++..              +.+...++..  ..+..+.+|+|++|+ ..+.+++.+|+++|||||++|+|+...
T Consensus        65 ---~~~~l~~~--------------d~I~~~~~~~d~~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~  126 (204)
T cd03282          65 ---EYATLPIF--------------NRLLSRLSNDDSMERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSADG  126 (204)
T ss_pred             ---hhcCccCh--------------hheeEecCCccccchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHH
Confidence               00000100              0111111211  245567899999975 555668899999999999999999776


Q ss_pred             HHHHH-HHHHHHHhcCcEEEEEeCChhHHHhhhc
Q 022663          187 MDLLD-FFKDECEQRGATIVYATHIFDGLETWAT  219 (294)
Q Consensus       187 ~~l~~-~l~~~~~~~g~tviivsHd~~~~~~~~d  219 (294)
                      ..+.. .+..+. +.+.++|++||+.+++...++
T Consensus       127 ~~l~~~il~~l~-~~~~~~i~~TH~~~l~~~~~~  159 (204)
T cd03282         127 FAISLAILECLI-KKESTVFFATHFRDIAAILGN  159 (204)
T ss_pred             HHHHHHHHHHHH-hcCCEEEEECChHHHHHHhhc
Confidence            66544 455544 458999999999999887653

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=99.82  E-value=4.7e-20  Score=188.00  Aligned_cols=95  Identities=19%  Similarity=0.254  Sum_probs=88.3

Q ss_pred             cccccccCCHHHHHHHHHHHHHccCC--CEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceE
Q 022663          144 LQWRMHKVSDGQRRRVQICMGLLHPF--KVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHL  221 (294)
Q Consensus       144 ~~~~~~~LSgGqkqRv~lAraL~~~p--~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v  221 (294)
                      +++.+.+|||||+|||+||++|+.+|  ++|||||||+|||+..+..++++|+++.+ .|.|||+|+||++++. +||+|
T Consensus       481 l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~-~G~TVIvVeHd~~~i~-~aD~v  558 (924)
T TIGR00630       481 LSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRD-LGNTVIVVEHDEETIR-AADYV  558 (924)
T ss_pred             cCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHh-CCCEEEEEECCHHHHh-hCCEE
Confidence            47889999999999999999999986  89999999999999999999999999865 5999999999999886 89999


Q ss_pred             EEe------eCCeEEecccHHHHHH
Q 022663          222 AYI------QDGELRRAEKLAELDE  240 (294)
Q Consensus       222 ~~l------~~G~i~~~g~~~~~~~  240 (294)
                      ++|      ++|+|+..|+++++..
T Consensus       559 i~LgpgaG~~~G~Iv~~g~~~el~~  583 (924)
T TIGR00630       559 IDIGPGAGIHGGEVVASGTPEEILA  583 (924)
T ss_pred             EEecccccCCCCEEeeccCHHHHhc
Confidence            999      8999999999988754

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=99.82  E-value=5.3e-20  Score=187.92  Aligned_cols=102  Identities=20%  Similarity=0.273  Sum_probs=91.9

Q ss_pred             HHHcCCC---cccccccCCHHHHHHHHHHHHHccCC--CEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCh
Q 022663          137 IELLDID---LQWRMHKVSDGQRRRVQICMGLLHPF--KVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIF  211 (294)
Q Consensus       137 l~~l~l~---~~~~~~~LSgGqkqRv~lAraL~~~p--~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~  211 (294)
                      ++.+++.   +++++.+|||||+|||+||++|+.+|  ++|||||||+|||+..+..++++|+++. +.|.|||+|+||+
T Consensus       473 L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~-~~G~TVIvVeH~~  551 (943)
T PRK00349        473 LVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLR-DLGNTLIVVEHDE  551 (943)
T ss_pred             hhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHH-hCCCEEEEEeCCH
Confidence            3445553   57889999999999999999999997  9999999999999999999999999986 4699999999999


Q ss_pred             hHHHhhhceEEEe------eCCeEEecccHHHHHH
Q 022663          212 DGLETWATHLAYI------QDGELRRAEKLAELDE  240 (294)
Q Consensus       212 ~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~  240 (294)
                      +++. .||+|++|      ++|+++..|+++++..
T Consensus       552 ~~i~-~aD~vi~LgpgaG~~~G~iv~~g~~~e~~~  585 (943)
T PRK00349        552 DTIR-AADYIVDIGPGAGVHGGEVVASGTPEEIMK  585 (943)
T ss_pred             HHHH-hCCEEEEeccccCCCCCEEeeccCHHHHhc
Confidence            9986 69999999      9999999999998754

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.82  E-value=9.6e-20  Score=185.97  Aligned_cols=200  Identities=23%  Similarity=0.259  Sum_probs=149.4

Q ss_pred             CCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCccc--CCCceEEecCCcccccccccccCCcccccccccccccc
Q 022663           29 PPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMV--GGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGS  106 (294)
Q Consensus        29 ~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~--~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (294)
                      ..+|+|+|.-+++|+.+.++||-||||||||++++|...-  .+.|.+.++|.+......   .....|.++.       
T Consensus       128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~---~~~~aY~~e~-------  197 (1391)
T KOG0065|consen  128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP---KKTVAYNSEQ-------  197 (1391)
T ss_pred             ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc---CceEEecccc-------
Confidence            4699999999999999999999999999999999995421  234578888875422111   1223333221       


Q ss_pred             cCcccccccccHHHHh-h--c-------CCCC-cHH----HHHHHHHHcCCC--c-----ccccccCCHHHHHHHHHHHH
Q 022663          107 AGEIPLQGDFSAEHMI-F--G-------VEGS-DPV----RRERLIELLDID--L-----QWRMHKVSDGQRRRVQICMG  164 (294)
Q Consensus       107 ~~~~~~~~~~~~~~~~-~--~-------~~~~-~~~----~~~~~l~~l~l~--~-----~~~~~~LSgGqkqRv~lAra  164 (294)
                         ...++.+|+++.+ +  .       .... +.+    ..+.+++.+|++  .     +...+-.|||||+||.+|-+
T Consensus       198 ---DvH~p~lTVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~  274 (1391)
T KOG0065|consen  198 ---DVHFPELTVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEM  274 (1391)
T ss_pred             ---ccccceeEEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeee
Confidence               1123344433321 1  0       0111 111    234678888885  2     34556799999999999999


Q ss_pred             HccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCh-hHHHhhhceEEEeeCCeEEecccHHHHHHh
Q 022663          165 LLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIF-DGLETWATHLAYIQDGELRRAEKLAELDEL  241 (294)
Q Consensus       165 L~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  241 (294)
                      ++.+|+++.+||+|.|||..+.-++.+.|+.+++..+.|++++-|.. +++..+.|.|++|.+|++++.|+.++....
T Consensus       275 ~v~~~~~~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~y  352 (1391)
T KOG0065|consen  275 LVGPASILFWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPY  352 (1391)
T ss_pred             eecCcceeeeecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHH
Confidence            99999999999999999999999999999999988888988888875 467778999999999999999999887654

>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]

Probab=99.79  E-value=7.8e-19  Score=161.06  Aligned_cols=180  Identities=24%  Similarity=0.313  Sum_probs=128.4

Q ss_pred             EEcCCCCCCCceeeeeEEEeCCC-----EEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCccc
Q 022663           21 FSYEGNDKPPLFYDFNLGISPGS-----RCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSY   95 (294)
Q Consensus        21 ~~y~~~~~~~iL~~vsl~i~~Ge-----~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~   95 (294)
                      ++|++  .+..+.++.|.|..|+     ++..+|.||.|||||+++++|.+.|+..+.+-...              +++
T Consensus       343 y~Yp~--m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~ln--------------VSy  406 (592)
T KOG0063|consen  343 YSYPK--MKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPVLN--------------VSY  406 (592)
T ss_pred             eccCc--ceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccCcccccc--------------eec
Confidence            34654  2446789999999885     78999999999999999999988887555443221              111


Q ss_pred             ccccccccccccCcccccccccHHHHhhcC---CCCcHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHHHccCCC
Q 022663           96 LGGSWSKTVGSAGEIPLQGDFSAEHMIFGV---EGSDPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMGLLHPFK  170 (294)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL~~~p~  170 (294)
                      -++.+...          ..-++.+++...   ...+..-..++++-|.++  .++.+..|||||+|||+||.+|-..++
T Consensus       407 kpqkispK----------~~~tvR~ll~~kIr~ay~~pqF~~dvmkpL~ie~i~dqevq~lSggelQRval~KOGGKpAd  476 (592)
T KOG0063|consen  407 KPQKISPK----------REGTVRQLLHTKIRDAYMHPQFVNDVMKPLQIENIIDQEVQGLSGGELQRVALALCLGKPAD  476 (592)
T ss_pred             cccccCcc----------ccchHHHHHHHHhHhhhcCHHHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCc
Confidence            11111100          001112211100   001223344555555554  477888999999999999999999999


Q ss_pred             EEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeC
Q 022663          171 VLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQD  226 (294)
Q Consensus       171 iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~  226 (294)
                      +++.|||.+-||.+.|...-..+++..-+.++|-.+|.||.-.+.-++|||++.+.
T Consensus       477 vYliDEpsAylDSeQRi~AskvikRfilhakktafvVEhdfImaTYladrvivf~G  532 (592)
T KOG0063|consen  477 VYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVFEG  532 (592)
T ss_pred             eEEecCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHhhcceeEEEec
Confidence            99999999999999998888888887666689999999999888889999988763

>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage

Probab=99.77  E-value=2.2e-18  Score=154.81  Aligned_cols=77  Identities=23%  Similarity=0.359  Sum_probs=66.9

Q ss_pred             cccCCHHHHHHHHHHHHHc---------cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhh
Q 022663          148 MHKVSDGQRRRVQICMGLL---------HPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWA  218 (294)
Q Consensus       148 ~~~LSgGqkqRv~lAraL~---------~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~  218 (294)
                      ...+|+||+|+++||++|+         .+|+++||||||++||+..+..+++.|.++    + .+++++|+.+.+..+|
T Consensus       181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~----~-q~ii~~~~~~~~~~~~  255 (270)
T cd03242         181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGR----V-QTFVTTTDLADFDALW  255 (270)
T ss_pred             HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcC----C-CEEEEeCCchhccchh
Confidence            4458999999999999985         799999999999999999999999988753    3 5777888878888888


Q ss_pred             ---ceEEEeeCCeE
Q 022663          219 ---THLAYIQDGEL  229 (294)
Q Consensus       219 ---d~v~~l~~G~i  229 (294)
                         ++++.+++|++
T Consensus       256 ~~~~~i~~l~~g~i  269 (270)
T cd03242         256 LRRAQIFRVDAGTL  269 (270)
T ss_pred             ccCccEEEEeCcEE
Confidence               78999999986

When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes

Probab=99.77  E-value=1.1e-18  Score=151.72  Aligned_cols=153  Identities=22%  Similarity=0.242  Sum_probs=94.2

Q ss_pred             CCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcccccccccccccccC
Q 022663           29 PPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAG  108 (294)
Q Consensus        29 ~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (294)
                      ..+.+|++|++.+ ++++|+||||||||||||+|++.......|...                     +.. ...+++..
T Consensus        18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~~v---------------------p~~-~~~i~~~~   74 (216)
T cd03284          18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALLAQIGSFV---------------------PAS-KAEIGVVD   74 (216)
T ss_pred             ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHHhccCCee---------------------ccc-cceeccee
Confidence            4588999999987 999999999999999999998743221111100                     000 00000000


Q ss_pred             cccccccccHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHH----HHHHHHHH--ccCCCEEEeeCC---CC
Q 022663          109 EIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRR----RVQICMGL--LHPFKVLLLDEI---TV  179 (294)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkq----Rv~lAraL--~~~p~iLlLDEP---t~  179 (294)
                      +  ++..++.                             ..++|.|+.+    ++.|++++  +.+|+++|||||   |+
T Consensus        75 ~--i~~~~~~-----------------------------~~~ls~g~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~  123 (216)
T cd03284          75 R--IFTRIGA-----------------------------SDDLAGGRSTFMVEMVETANILNNATERSLVLLDEIGRGTS  123 (216)
T ss_pred             e--EeccCCc-----------------------------hhhhccCcchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCC
Confidence            0  0111100                             1234444443    33455555  579999999999   88


Q ss_pred             CCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663          180 DLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL  238 (294)
Q Consensus       180 gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~  238 (294)
                      ++|....  ...++..+.+..+.++|++||+.+ +..++|++..+.+|++...+..+++
T Consensus       124 ~lD~~~~--~~~il~~l~~~~~~~vi~~TH~~~-l~~l~~~~~~v~~~~~~~~~~~~~l  179 (216)
T cd03284         124 TYDGLSI--AWAIVEYLHEKIGAKTLFATHYHE-LTELEGKLPRVKNFHVAVKEKGGGV  179 (216)
T ss_pred             hHHHHHH--HHHHHHHHHhccCCcEEEEeCcHH-HHHHhhcCCCeEEEEEEEEeeCCeE
Confidence            8998653  223333333323789999999975 5668998888888888766555444

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam

>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family

Probab=99.75  E-value=1.1e-18  Score=148.26  Aligned_cols=82  Identities=16%  Similarity=0.155  Sum_probs=58.9

Q ss_pred             ccccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHH-HHHHHHHHhcCcEEEEEeCChhHHHhhhceEEE
Q 022663          145 QWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLL-DFFKDECEQRGATIVYATHIFDGLETWATHLAY  223 (294)
Q Consensus       145 ~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~-~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~  223 (294)
                      ++..+++|+|++|...+++ .+.+|+++|+|||++|+|+.....+. .+++.+.++.+.++|++||+.+ +.++|++.--
T Consensus        56 ~~~~s~fs~~~~~l~~~l~-~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~-l~~~~~~~~~  133 (185)
T smart00534       56 AQGLSTFMVEMKETANILK-NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHE-LTKLADEHPG  133 (185)
T ss_pred             hccccHHHHHHHHHHHHHH-hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHH-HHHHhhcCcc
Confidence            3457789998887444443 24599999999999999999887765 4455554324789999999996 5667875433


Q ss_pred             eeCCe
Q 022663          224 IQDGE  228 (294)
Q Consensus       224 l~~G~  228 (294)
                      +.+++
T Consensus       134 v~~~~  138 (185)
T smart00534      134 VRNLH  138 (185)
T ss_pred             ceEEE
Confidence            44443

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=99.68  E-value=1.1e-15  Score=132.59  Aligned_cols=66  Identities=14%  Similarity=0.132  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHH-HHHHHHHHHh--cCcEEEEEeCChhHHHhhh
Q 022663          153 DGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDL-LDFFKDECEQ--RGATIVYATHIFDGLETWA  218 (294)
Q Consensus       153 gGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l-~~~l~~~~~~--~g~tviivsHd~~~~~~~~  218 (294)
                      .-+.||+++|++++.+|.++|||||++|+|+.....+ ..+++.+.+.  .+.++|++||+.+++....
T Consensus        93 ~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~~  161 (213)
T cd03281          93 MIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRSL  161 (213)
T ss_pred             HHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhhh
Confidence            3567999999999999999999999999999765444 5677776543  1348999999999887654

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []

Probab=99.67  E-value=6.6e-16  Score=134.34  Aligned_cols=74  Identities=27%  Similarity=0.365  Sum_probs=56.7

Q ss_pred             ccCCHHHHHHHHHHHHHc----cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEe
Q 022663          149 HKVSDGQRRRVQICMGLL----HPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYI  224 (294)
Q Consensus       149 ~~LSgGqkqRv~lAraL~----~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l  224 (294)
                      ..||||||.+++||..|+    .+++++|||||.++||...+..+.++|.++.  .+.-+|++||+...+. .||+.+.+
T Consensus       135 ~~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~--~~~Q~ii~Th~~~~~~-~a~~~~~v  211 (220)
T PF02463_consen  135 EFLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELS--KQSQFIITTHNPEMFE-DADKLIGV  211 (220)
T ss_dssp             TGS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHT--TTSEEEEE-S-HHHHT-T-SEEEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccc--cccccccccccccccc-cccccccc
Confidence            399999999999997764    5779999999999999999999999999864  2578999999988665 57887655


Q ss_pred             e
Q 022663          225 Q  225 (294)
Q Consensus       225 ~  225 (294)
                      .
T Consensus       212 ~  212 (220)
T PF02463_consen  212 T  212 (220)
T ss_dssp             E
T ss_pred             c
Confidence            3

The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....

>TIGR01069 mutS2 MutS2 family protein

Probab=99.67  E-value=8.1e-17  Score=162.55  Aligned_cols=134  Identities=19%  Similarity=0.215  Sum_probs=90.6

Q ss_pred             eeeEEEeCC-CEEEEECCCCCcHHHHHHHHhCCc-ccCCCceEEecCCcccccccccccCCcccccccccccccccCccc
Q 022663           34 DFNLGISPG-SRCLLVGANGSGKTTLLKILAGKH-MVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIP  111 (294)
Q Consensus        34 ~vsl~i~~G-e~~~liG~NGsGKSTLlk~i~G~~-~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (294)
                      .+|+++..+ ++++|+||||+|||||||+|+|.. .+. .|.....+.                     ...+      +
T Consensus       313 p~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq-~G~~Vpa~~---------------------~~~~------~  364 (771)
T TIGR01069       313 PFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQ-SGIPIPANE---------------------HSEI------P  364 (771)
T ss_pred             eceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHH-hCCCccCCc---------------------cccc------c
Confidence            378999887 899999999999999999999862 222 221000000                     0000      0


Q ss_pred             ccccccHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHH-
Q 022663          112 LQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLL-  190 (294)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~-  190 (294)
                      ++.     ++.... . +.   +.        .....++||+|+++++.|++++ .+|.++|||||++|+|+.....+. 
T Consensus       365 ~~d-----~i~~~i-~-~~---~s--------i~~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala~  425 (771)
T TIGR01069       365 YFE-----EIFADI-G-DE---QS--------IEQNLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSALAI  425 (771)
T ss_pred             chh-----heeeec-C-hH---hH--------HhhhhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHHHH
Confidence            000     000000 0 00   11        1234678999999999998876 889999999999999999999985 


Q ss_pred             HHHHHHHHhcCcEEEEEeCChhHHH
Q 022663          191 DFFKDECEQRGATIVYATHIFDGLE  215 (294)
Q Consensus       191 ~~l~~~~~~~g~tviivsHd~~~~~  215 (294)
                      .++..+ .+.|.++|++||+.++..
T Consensus       426 aiLe~l-~~~g~~viitTH~~eL~~  449 (771)
T TIGR01069       426 SILEYL-LKQNAQVLITTHYKELKA  449 (771)
T ss_pred             HHHHHH-HhcCCEEEEECChHHHHH
Confidence            556555 456899999999988643

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=99.65  E-value=1.4e-15  Score=136.02  Aligned_cols=143  Identities=15%  Similarity=0.126  Sum_probs=84.9

Q ss_pred             CEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcccccccccccccccCcccccccccHHHHh
Q 022663           43 SRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMI  122 (294)
Q Consensus        43 e~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (294)
                      .-++|+||||||||||+++|+|++.+. .|.+.++|.+.....      ..    .++...+..+++..+..        
T Consensus       112 ~~~~i~g~~g~GKttl~~~l~~~~~~~-~G~i~~~g~~v~~~d------~~----~ei~~~~~~~~q~~~~~--------  172 (270)
T TIGR02858       112 LNTLIISPPQCGKTTLLRDLARILSTG-ISQLGLRGKKVGIVD------ER----SEIAGCVNGVPQHDVGI--------  172 (270)
T ss_pred             eEEEEEcCCCCCHHHHHHHHhCccCCC-CceEEECCEEeecch------hH----HHHHHHhcccccccccc--------
Confidence            578999999999999999999998876 888888776532100      00    00000011111100000        


Q ss_pred             hcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCc
Q 022663          123 FGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGA  202 (294)
Q Consensus       123 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~  202 (294)
                                              +..-|.+=.|.....+.+.+.+|++||+|||++      ...+..++..+ + .|.
T Consensus       173 ------------------------r~~v~~~~~k~~~~~~~i~~~~P~villDE~~~------~e~~~~l~~~~-~-~G~  220 (270)
T TIGR02858       173 ------------------------RTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGR------EEDVEALLEAL-H-AGV  220 (270)
T ss_pred             ------------------------cccccccchHHHHHHHHHHhCCCCEEEEeCCCc------HHHHHHHHHHH-h-CCC
Confidence                                    000011111111223344447999999999974      23344444443 3 489


Q ss_pred             EEEEEeCChhH--H-----------HhhhceEEEeeCCeEEecccHHHH
Q 022663          203 TIVYATHIFDG--L-----------ETWATHLAYIQDGELRRAEKLAEL  238 (294)
Q Consensus       203 tviivsHd~~~--~-----------~~~~d~v~~l~~G~i~~~g~~~~~  238 (294)
                      +||++||+...  +           ..++||+++|++|+  ..|.++++
T Consensus       221 ~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i  267 (270)
T TIGR02858       221 SIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAV  267 (270)
T ss_pred             EEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeec
Confidence            99999997655  4           35689999999876  55665544

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes

Probab=99.63  E-value=4.8e-15  Score=129.11  Aligned_cols=137  Identities=15%  Similarity=0.139  Sum_probs=85.6

Q ss_pred             CCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCC-cccCCCceEEecCCcccccccccccCCccccccccccccccc
Q 022663           29 PPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGK-HMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSA  107 (294)
Q Consensus        29 ~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~-~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (294)
                      ..+.+|++|.+.+|++++|+||||+|||||+++|++. +.+. .|...+....           .+.++.+         
T Consensus        18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~-~G~~v~a~~~-----------~~~~~~~---------   76 (222)
T cd03287          18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQ-IGSFVPASSA-----------TLSIFDS---------   76 (222)
T ss_pred             CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHh-CCCEEEcCce-----------EEeccce---------
Confidence            4688999999999999999999999999999999993 3333 4443221100           0111100         


Q ss_pred             CcccccccccHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCH--HHHHHHHHHHHHccCCCEEEeeCCCCCCCHHH
Q 022663          108 GEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSD--GQRRRVQICMGLLHPFKVLLLDEITVDLDVVA  185 (294)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSg--GqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~  185 (294)
                          ++..+...                         +.....+|.  .|-+++.-+.--+.+|.++|||||.+|.|+..
T Consensus        77 ----i~~~~~~~-------------------------d~~~~~~StF~~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d  127 (222)
T cd03287          77 ----VLTRMGAS-------------------------DSIQHGMSTFMVELSETSHILSNCTSRSLVILDELGRGTSTHD  127 (222)
T ss_pred             ----EEEEecCc-------------------------cccccccchHHHHHHHHHHHHHhCCCCeEEEEccCCCCCChhh
Confidence                00000000                         000112222  23444444444567899999999988888766


Q ss_pred             HHHH-HHHHHHHHHhcCcEEEEEeCChhHHH
Q 022663          186 RMDL-LDFFKDECEQRGATIVYATHIFDGLE  215 (294)
Q Consensus       186 ~~~l-~~~l~~~~~~~g~tviivsHd~~~~~  215 (294)
                      ...+ ...+..+.+..+.++|++||+.++..
T Consensus       128 ~~~i~~~il~~l~~~~~~~~i~~TH~~~l~~  158 (222)
T cd03287         128 GIAIAYATLHYLLEEKKCLVLFVTHYPSLGE  158 (222)
T ss_pred             HHHHHHHHHHHHHhccCCeEEEEcccHHHHH
Confidence            6664 45555555434789999999998764

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed

Probab=99.62  E-value=2.9e-15  Score=151.65  Aligned_cols=78  Identities=18%  Similarity=0.087  Sum_probs=64.9

Q ss_pred             cccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEe
Q 022663          146 WRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYI  224 (294)
Q Consensus       146 ~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l  224 (294)
                      ...+++|+||+|++.|++++ .+|.++|||||++|+|+.....+...+.+...+.|.++|++||+.++....+++..++
T Consensus       386 ~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~~~~~~~v~  463 (782)
T PRK00409        386 QSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKALMYNREGVE  463 (782)
T ss_pred             hchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHHHhcCCCeE
Confidence            45778999999999999998 8999999999999999999988865443434456899999999999888777765543

>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]

Probab=99.61  E-value=1.2e-15  Score=140.22  Aligned_cols=92  Identities=21%  Similarity=0.313  Sum_probs=81.4

Q ss_pred             HHHHHHHcCCC--cccccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q 022663          133 RERLIELLDID--LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHI  210 (294)
Q Consensus       133 ~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd  210 (294)
                      ..++.+.+.+.  +++.+.+||||+-||.+||.+.++..++.++|||.+.||...+......|+.+.. -..-||+|.||
T Consensus       194 ~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~IRsl~~-p~~YiIVVEHD  272 (592)
T KOG0063|consen  194 KEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITIRSLIN-PDRYIIVVEHD  272 (592)
T ss_pred             HHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHHHHHHhhC-CCCeEEEEEee
Confidence            34566666654  5788999999999999999999999999999999999999999999999998875 36789999999


Q ss_pred             hhHHHhhhceEEEee
Q 022663          211 FDGLETWATHLAYIQ  225 (294)
Q Consensus       211 ~~~~~~~~d~v~~l~  225 (294)
                      +..+.-+.|-+.++.
T Consensus       273 LsVLDylSDFiCcLY  287 (592)
T KOG0063|consen  273 LSVLDYLSDFICCLY  287 (592)
T ss_pred             chHHHhhhcceeEEe
Confidence            999999999998886

>TIGR00618 sbcc exonuclease SbcC

Probab=99.57  E-value=8.7e-15  Score=153.49  Aligned_cols=82  Identities=15%  Similarity=0.086  Sum_probs=76.3

Q ss_pred             ccccccCCHHHHHHHHHHHHHcc----------CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHH
Q 022663          145 QWRMHKVSDGQRRRVQICMGLLH----------PFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGL  214 (294)
Q Consensus       145 ~~~~~~LSgGqkqRv~lAraL~~----------~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~  214 (294)
                      ++++..|||||++||+||+||+.          +|++|||||||++||+.++..+++.|.++.. .|.+|+||||++++.
T Consensus       945 ~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~-~g~~i~iisH~~~~~ 1023 (1042)
T TIGR00618       945 VRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIRE-GSKMIGIISHVPEFR 1023 (1042)
T ss_pred             cCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCcHHHH
Confidence            46789999999999999999985          7999999999999999999999999999865 689999999999999


Q ss_pred             HhhhceEEEeeCC
Q 022663          215 ETWATHLAYIQDG  227 (294)
Q Consensus       215 ~~~~d~v~~l~~G  227 (294)
                      ..+||+|+|++.|
T Consensus      1024 ~~~~~~i~v~~~~ 1036 (1042)
T TIGR00618      1024 ERIPHRILVKKTN 1036 (1042)
T ss_pred             HhhCCEEEEEECC
Confidence            9999999999754

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes

Probab=99.57  E-value=6.8e-14  Score=121.54  Aligned_cols=141  Identities=16%  Similarity=0.143  Sum_probs=89.2

Q ss_pred             CCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcccccccccccccccC
Q 022663           29 PPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAG  108 (294)
Q Consensus        29 ~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (294)
                      ..+-+|++|++.+|++++|+||||+|||||++++++.......|....     ..      ...+..+.           
T Consensus        17 ~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~~vp-----a~------~~~i~~~~-----------   74 (218)
T cd03286          17 SFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGMDVP-----AK------SMRLSLVD-----------   74 (218)
T ss_pred             CeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCCccC-----cc------ccEecccc-----------
Confidence            468899999999999999999999999999999987432211111000     00      00000000           


Q ss_pred             cccccccccHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCH--HHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHH
Q 022663          109 EIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSD--GQRRRVQICMGLLHPFKVLLLDEITVDLDVVAR  186 (294)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSg--GqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~  186 (294)
                        .++..+...                         +.....+|.  .|-+++.-....+.+|.++|||||++|+|+...
T Consensus        75 --~i~~~~~~~-------------------------d~~~~~~StF~~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg  127 (218)
T cd03286          75 --RIFTRIGAR-------------------------DDIMKGESTFMVELSETANILRHATPDSLVILDELGRGTSTHDG  127 (218)
T ss_pred             --EEEEecCcc-------------------------cccccCcchHHHHHHHHHHHHHhCCCCeEEEEecccCCCCchHH
Confidence              000000000                         000011222  344455444445689999999999999999999


Q ss_pred             HHHHHH-HHHHHHhcCcEEEEEeCChhHHHhhh
Q 022663          187 MDLLDF-FKDECEQRGATIVYATHIFDGLETWA  218 (294)
Q Consensus       187 ~~l~~~-l~~~~~~~g~tviivsHd~~~~~~~~  218 (294)
                      ..+... +..+.+..+.++|++||+.+++..++
T Consensus       128 ~~la~ail~~L~~~~~~~~i~~TH~~el~~~~~  160 (218)
T cd03286         128 YAIAHAVLEYLVKKVKCLTLFSTHYHSLCDEFH  160 (218)
T ss_pred             HHHHHHHHHHHHHhcCCcEEEEeccHHHHHHhh
Confidence            888888 55554333899999999999988776

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>TIGR00634 recN DNA repair protein RecN

Probab=99.55  E-value=1.1e-14  Score=143.28  Aligned_cols=76  Identities=16%  Similarity=0.210  Sum_probs=69.7

Q ss_pred             cCCHHHHHHHHHHHHHccC----CCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEee
Q 022663          150 KVSDGQRRRVQICMGLLHP----FKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQ  225 (294)
Q Consensus       150 ~LSgGqkqRv~lAraL~~~----p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~  225 (294)
                      .|||||+||++||++++..    |++|||||||+|||+..+..+.+.|.++.+  +.+||+|||++..+. +||++++|+
T Consensus       440 ~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~--~~~vi~iTH~~~~~~-~ad~~~~l~  516 (563)
T TIGR00634       440 VASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE--RHQVLCVTHLPQVAA-HADAHFKVE  516 (563)
T ss_pred             hcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEEChHHHHH-hcCeEEEEE
Confidence            5899999999999999985    699999999999999999999999998753  799999999999875 899999999


Q ss_pred             CCe
Q 022663          226 DGE  228 (294)
Q Consensus       226 ~G~  228 (294)
                      +|.
T Consensus       517 k~~  519 (563)
T TIGR00634       517 KEG  519 (563)
T ss_pred             Ecc
Confidence            864

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>PHA02562 46 endonuclease subunit; Provisional

Probab=99.52  E-value=1.9e-14  Score=141.75  Aligned_cols=79  Identities=16%  Similarity=0.257  Sum_probs=69.4

Q ss_pred             ccccCCHHHHHHHHHHHHHc----------cCCCEEEeeCCC-CCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHH
Q 022663          147 RMHKVSDGQRRRVQICMGLL----------HPFKVLLLDEIT-VDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLE  215 (294)
Q Consensus       147 ~~~~LSgGqkqRv~lAraL~----------~~p~iLlLDEPt-~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~  215 (294)
                      .+..|||||+||++||+||+          .+|++||||||| ++||+..+..+.++|.++   .+.|||+|||+.+.. 
T Consensus       465 ~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~---~~~~iiiish~~~~~-  540 (562)
T PHA02562        465 SYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL---KDTNVFVISHKDHDP-  540 (562)
T ss_pred             ChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC---CCCeEEEEECchhch-
Confidence            45789999999999999987          599999999998 789999999999999886   378999999997765 


Q ss_pred             hhhceEEEeeC-CeE
Q 022663          216 TWATHLAYIQD-GEL  229 (294)
Q Consensus       216 ~~~d~v~~l~~-G~i  229 (294)
                      ..||++++|.+ |+.
T Consensus       541 ~~~d~~~~l~~~~~~  555 (562)
T PHA02562        541 QKFDRHLKMEKVGRF  555 (562)
T ss_pred             hhhhcEEEEEEECCe
Confidence            57999999986 554

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=99.52  E-value=1.4e-13  Score=120.72  Aligned_cols=74  Identities=24%  Similarity=0.235  Sum_probs=50.5

Q ss_pred             cCCHHHHHHHHHHHHHc----cCCCEEEeeCCCCCC----CHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHH-------
Q 022663          150 KVSDGQRRRVQICMGLL----HPFKVLLLDEITVDL----DVVARMDLLDFFKDECEQRGATIVYATHIFDGL-------  214 (294)
Q Consensus       150 ~LSgGqkqRv~lAraL~----~~p~iLlLDEPt~gL----D~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~-------  214 (294)
                      .+|+++.++..+.+.+-    .+|+++++||||+++    |+..+..+.++++.+.+ .|.|+++ ||+...+       
T Consensus        95 ~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~-~g~tvi~-t~~~~~~~~~~~~~  172 (230)
T PRK08533         95 LLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISS-LNKVIIL-TANPKELDESVLTI  172 (230)
T ss_pred             cccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHh-CCCEEEE-Eeccccccccccee
Confidence            36666666555555443    369999999999999    88888889999887754 4775554 5665432       


Q ss_pred             -HhhhceEEEee
Q 022663          215 -ETWATHLAYIQ  225 (294)
Q Consensus       215 -~~~~d~v~~l~  225 (294)
                       ..+||-|+.|+
T Consensus       173 ~~~~~DgvI~L~  184 (230)
T PRK08533        173 LRTAATMLIRLE  184 (230)
T ss_pred             EEEeeeEEEEEE
Confidence             33455565555

>PRK10869 recombination and repair protein; Provisional

Probab=99.50  E-value=6.8e-14  Score=137.10  Aligned_cols=75  Identities=13%  Similarity=0.247  Sum_probs=68.5

Q ss_pred             cCCHHHHHHHHHHHHHcc----CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEee
Q 022663          150 KVSDGQRRRVQICMGLLH----PFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQ  225 (294)
Q Consensus       150 ~LSgGqkqRv~lAraL~~----~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~  225 (294)
                      .|||||+|||+||++++.    +|+++|||||++|||..+...+.+.|.++.+  +.+||+|||++..+ .+||+.+.+.
T Consensus       430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~--~~qvi~iTH~~~~~-~~ad~~~~v~  506 (553)
T PRK10869        430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE--STQVMCVTHLPQVA-GCGHQHFFVS  506 (553)
T ss_pred             hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEecCHHHH-HhCCEEEEEe
Confidence            379999999999999997    5899999999999999999999999998753  68999999999876 6999999998


Q ss_pred             CC
Q 022663          226 DG  227 (294)
Q Consensus       226 ~G  227 (294)
                      ++
T Consensus       507 k~  508 (553)
T PRK10869        507 KE  508 (553)
T ss_pred             cc
Confidence            74

>PRK07721 fliI flagellum-specific ATP synthase; Validated

Probab=99.50  E-value=4.7e-13  Score=127.14  Aligned_cols=186  Identities=15%  Similarity=0.189  Sum_probs=105.7

Q ss_pred             CCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcccccccccccccccC
Q 022663           29 PPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAG  108 (294)
Q Consensus        29 ~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (294)
                      ..+++++ |.+.+|++++|+|+||+|||||+++|+|...++ .|.+...|.....-.... ...+.  ...+.+.+.++.
T Consensus       146 ~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~-~gvI~~~Gerg~ev~e~~-~~~l~--~~~l~r~v~vv~  220 (438)
T PRK07721        146 VRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSAD-LNVIALIGERGREVREFI-ERDLG--PEGLKRSIVVVA  220 (438)
T ss_pred             hhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCC-eEEEEEEecCCccHHHHH-HhhcC--hhhhcCeEEEEE
Confidence            4589999 999999999999999999999999999988775 677776554321100000 00000  000111111111


Q ss_pred             cccccccccHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCH-HHHHHHHHHHHHccCCCEEEeeCC--CCCCCHHH
Q 022663          109 EIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSD-GQRRRVQICMGLLHPFKVLLLDEI--TVDLDVVA  185 (294)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSg-GqkqRv~lAraL~~~p~iLlLDEP--t~gLD~~~  185 (294)
                      .   ...-....+....   ..-...+.+..-+.+----+.+|+- -|.+| .|+         +.+.||  |+|+|+..
T Consensus       221 ~---~~~~~~~r~~~~~---~a~~iAEyfr~~g~~Vll~~Dsltr~A~A~r-Eis---------l~~ge~P~~~G~dp~~  284 (438)
T PRK07721        221 T---SDQPALMRIKGAY---TATAIAEYFRDQGLNVMLMMDSVTRVAMAQR-EIG---------LAVGEPPTTKGYTPSV  284 (438)
T ss_pred             C---CCCCHHHHHHHHH---HHHHHHHHHHHCCCcEEEEEeChHHHHHHHH-HHH---------HhcCCCCccccCCHHH
Confidence            0   0000000000000   0001122222222210001112221 11111 111         123464  89999999


Q ss_pred             HHHHHHHHHHHHH-hcCc-----EEEEEeCChhHHHhhhceEEEeeCCeEEecccHHH
Q 022663          186 RMDLLDFFKDECE-QRGA-----TIVYATHIFDGLETWATHLAYIQDGELRRAEKLAE  237 (294)
Q Consensus       186 ~~~l~~~l~~~~~-~~g~-----tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~  237 (294)
                      ...+.+++.++.. +.|.     ||++.+||+++  .+||++..+.+|+|+.++...+
T Consensus       285 ~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e--~i~d~v~~i~dG~Ivls~~la~  340 (438)
T PRK07721        285 FAILPKLLERTGTNASGSITAFYTVLVDGDDMNE--PIADTVRGILDGHFVLDRQLAN  340 (438)
T ss_pred             HHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc--hhhhhEEEecCEEEEEeccHHH
Confidence            9999999998753 2464     99999999994  8999999999999998877654

>PRK13695 putative NTPase; Provisional

Probab=99.49  E-value=1.2e-13  Score=115.89  Aligned_cols=81  Identities=10%  Similarity=0.076  Sum_probs=65.4

Q ss_pred             cccccCCHHHHHHHHHHHHHccCCCEEEeeC--CCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEE
Q 022663          146 WRMHKVSDGQRRRVQICMGLLHPFKVLLLDE--ITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAY  223 (294)
Q Consensus       146 ~~~~~LSgGqkqRv~lAraL~~~p~iLlLDE--Pt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~  223 (294)
                      +....+||+++-++.+++..+.+|++|++||  |+.++|+..    .+.+.++. +.+.++|+++|+. .+..++|++..
T Consensus        74 ~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~----~~~l~~~~-~~~~~~i~v~h~~-~~~~~~~~i~~  147 (174)
T PRK13695         74 KYVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKF----VKAVEEVL-DSEKPVIATLHRR-SVHPFVQEIKS  147 (174)
T ss_pred             eEEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHH----HHHHHHHH-hCCCeEEEEECch-hhHHHHHHHhc
Confidence            4456799999999999999999999999999  555666544    45555544 3589999999994 56678999999


Q ss_pred             eeCCeEEec
Q 022663          224 IQDGELRRA  232 (294)
Q Consensus       224 l~~G~i~~~  232 (294)
                      +.+|++...
T Consensus       148 ~~~~~i~~~  156 (174)
T PRK13695        148 RPGGRVYEL  156 (174)
T ss_pred             cCCcEEEEE
Confidence            999998765

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=99.47  E-value=7.5e-14  Score=123.54  Aligned_cols=76  Identities=14%  Similarity=0.200  Sum_probs=61.5

Q ss_pred             ccCCHHH--------HHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHH-HHHHHHHHHHhcCcEEEEEeCChhHHHhhhc
Q 022663          149 HKVSDGQ--------RRRVQICMGLLHPFKVLLLDEITVDLDVVARMD-LLDFFKDECEQRGATIVYATHIFDGLETWAT  219 (294)
Q Consensus       149 ~~LSgGq--------kqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~-l~~~l~~~~~~~g~tviivsHd~~~~~~~~d  219 (294)
                      ..+|||+        +||+++||++..+++|++|  ||+.+|..+... ++  +.++ +..+.|.|++||++.... ..|
T Consensus       128 ~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~~~i--~~~~-~~~~~~~ivls~~la~~~-~~p  201 (249)
T cd01128         128 KILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVDTGSRMDDVI--FEEF-KGTGNMELVLDRRLAERR-IFP  201 (249)
T ss_pred             CCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheecCCCcccchH--HHHH-hcCCCcEEEEchHHhhCC-CCC
Confidence            3479999        9999999999999999999  999999644432 43  3333 335789999999999765 689


Q ss_pred             eEEEeeCCeEE
Q 022663          220 HLAYIQDGELR  230 (294)
Q Consensus       220 ~v~~l~~G~i~  230 (294)
                      .|.+|+.|.+.
T Consensus       202 aI~vl~s~sr~  212 (249)
T cd01128         202 AIDILKSGTRK  212 (249)
T ss_pred             eEEEcCCCCcc
Confidence            99999999973

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>PRK03918 chromosome segregation protein; Provisional

Probab=99.47  E-value=1.4e-13  Score=142.25  Aligned_cols=80  Identities=21%  Similarity=0.223  Sum_probs=69.5

Q ss_pred             ccccccCCHHHHH------HHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhh
Q 022663          145 QWRMHKVSDGQRR------RVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWA  218 (294)
Q Consensus       145 ~~~~~~LSgGqkq------Rv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~  218 (294)
                      +.++..|||||++      |++||++++.+|+++||||||++||+..+..+.++|..+.. .+.+||+||||.++ ..+|
T Consensus       783 ~~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~-~~~~iiiith~~~~-~~~~  860 (880)
T PRK03918        783 ERPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLR-KIPQVIIVSHDEEL-KDAA  860 (880)
T ss_pred             cCChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHh-cCCEEEEEECCHHH-HHhC
Confidence            3567899999999      55666788899999999999999999999999999988754 46899999999985 4689


Q ss_pred             ceEEEeeC
Q 022663          219 THLAYIQD  226 (294)
Q Consensus       219 d~v~~l~~  226 (294)
                      |++++|..
T Consensus       861 d~~~~l~~  868 (880)
T PRK03918        861 DYVIRVSL  868 (880)
T ss_pred             CeEEEEEe
Confidence            99999983

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=99.46  E-value=5.5e-13  Score=112.64  Aligned_cols=81  Identities=10%  Similarity=-0.000  Sum_probs=66.9

Q ss_pred             ccccccCCHHHHH------HHHHHHHHccCCCEEEeeCCCCCCC---HHHHHHHHHHHHHHHHhcCcEEEEEeCChhH--
Q 022663          145 QWRMHKVSDGQRR------RVQICMGLLHPFKVLLLDEITVDLD---VVARMDLLDFFKDECEQRGATIVYATHIFDG--  213 (294)
Q Consensus       145 ~~~~~~LSgGqkq------Rv~lAraL~~~p~iLlLDEPt~gLD---~~~~~~l~~~l~~~~~~~g~tviivsHd~~~--  213 (294)
                      +..+..+|+|++|      ....+.+...+|+++++|||++.+|   ...+..+.+++..+. +.|.|+|+++|+...  
T Consensus        66 d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~-~~g~tvi~v~~~~~~~~  144 (187)
T cd01124          66 DADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALK-RFGVTTLLTSEQSGLEG  144 (187)
T ss_pred             ecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHH-HCCCEEEEEeccccCCC
Confidence            5667889999998      5555555678999999999999999   878888888887765 459999999998765  


Q ss_pred             -------HHhhhceEEEeeC
Q 022663          214 -------LETWATHLAYIQD  226 (294)
Q Consensus       214 -------~~~~~d~v~~l~~  226 (294)
                             +..+||.|+.|+.
T Consensus       145 ~~~~~~~~~~~aD~ii~l~~  164 (187)
T cd01124         145 TGFGGGDVEYLVDGVIRLRL  164 (187)
T ss_pred             cccCcCceeEeeeEEEEEEE
Confidence                   6788999998873

A related protein is found in archaea.

>PRK01156 chromosome segregation protein; Provisional

Probab=99.46  E-value=2.4e-13  Score=140.85  Aligned_cols=78  Identities=21%  Similarity=0.231  Sum_probs=68.7

Q ss_pred             ccccCCHHHHHHHHH------HHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcC--cEEEEEeCChhHHHhhh
Q 022663          147 RMHKVSDGQRRRVQI------CMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRG--ATIVYATHIFDGLETWA  218 (294)
Q Consensus       147 ~~~~LSgGqkqRv~l------AraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g--~tviivsHd~~~~~~~~  218 (294)
                      .+..|||||++|++|      |++++.+|++++|||||++||+..+..+.++|....+..+  .+||+||||.+++ .+|
T Consensus       798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~-~~~  876 (895)
T PRK01156        798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELL-SVA  876 (895)
T ss_pred             ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHH-Hhc
Confidence            578899999999975      5999999999999999999999999999999976554433  4899999999977 589


Q ss_pred             ceEEEee
Q 022663          219 THLAYIQ  225 (294)
Q Consensus       219 d~v~~l~  225 (294)
                      |+++.+.
T Consensus       877 d~ii~~~  883 (895)
T PRK01156        877 DVAYEVK  883 (895)
T ss_pred             CeEEEEE
Confidence            9999998

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=99.44  E-value=3.9e-13  Score=140.79  Aligned_cols=81  Identities=21%  Similarity=0.144  Sum_probs=74.7

Q ss_pred             ccccccCCHHHHHHHHHHHHHcc--------CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHh
Q 022663          145 QWRMHKVSDGQRRRVQICMGLLH--------PFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLET  216 (294)
Q Consensus       145 ~~~~~~LSgGqkqRv~lAraL~~--------~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~  216 (294)
                      .+++.+|||||+++++||+||+.        +|++||+||||++||+.+...+++.|..+.. .|.||+||||..++..+
T Consensus       944 ~r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~-~g~~v~iisH~~~l~~~ 1022 (1047)
T PRK10246        944 VRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNA-SGKTIGVISHVEAMKER 1022 (1047)
T ss_pred             CCCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-CCCEEEEEecHHHHHHh
Confidence            46789999999999999999995        8999999999999999999999999998864 59999999999999999


Q ss_pred             hhceEEEeeC
Q 022663          217 WATHLAYIQD  226 (294)
Q Consensus       217 ~~d~v~~l~~  226 (294)
                      +..+|.|-..
T Consensus      1023 i~~qi~V~k~ 1032 (1047)
T PRK10246       1023 IPVQIKVKKI 1032 (1047)
T ss_pred             ccceEEEEEC
Confidence            9888888765

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.43  E-value=8.3e-13  Score=114.40  Aligned_cols=49  Identities=6%  Similarity=0.036  Sum_probs=44.1

Q ss_pred             ccCCHH--HHHHHHHHHHHccCCCEEEeeCCC-----CCCCHHHHHHHHHHHHHHH
Q 022663          149 HKVSDG--QRRRVQICMGLLHPFKVLLLDEIT-----VDLDVVARMDLLDFFKDEC  197 (294)
Q Consensus       149 ~~LSgG--qkqRv~lAraL~~~p~iLlLDEPt-----~gLD~~~~~~l~~~l~~~~  197 (294)
                      +..||+  |++++.||++++.+|+++++||||     ++||+..+..+.+.+.+++
T Consensus       149 Sa~~~~~v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~  204 (215)
T PTZ00132        149 SAKSNYNFEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAA  204 (215)
T ss_pred             eCCCCCCHHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHh
Confidence            344444  999999999999999999999999     9999999999999999875

>TIGR00606 rad50 rad50

Probab=99.40  E-value=5.5e-13  Score=142.68  Aligned_cols=73  Identities=23%  Similarity=0.209  Sum_probs=65.7

Q ss_pred             ccccCCHHHHH------HHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHH----hcCcEEEEEeCChhHHHh
Q 022663          147 RMHKVSDGQRR------RVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECE----QRGATIVYATHIFDGLET  216 (294)
Q Consensus       147 ~~~~LSgGqkq------Rv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~----~~g~tviivsHd~~~~~~  216 (294)
                      ..+.|||||+|      |++||+|++.+|++|+|||||++||+.+...+.+.|..+..    ..|.+||+||||++++..
T Consensus      1196 ~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~~ 1275 (1311)
T TIGR00606      1196 MRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVEL 1275 (1311)
T ss_pred             CCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHHH
Confidence            44789999999      99999999999999999999999999999999998887642    237899999999999998


Q ss_pred             hhc
Q 022663          217 WAT  219 (294)
Q Consensus       217 ~~d  219 (294)
                      +|.
T Consensus      1276 ~~~ 1278 (1311)
T TIGR00606      1276 LGR 1278 (1311)
T ss_pred             Hhh
Confidence            864

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG3910 Predicted ATPase [General function prediction only]

Probab=99.40  E-value=4.5e-12  Score=105.43  Aligned_cols=82  Identities=22%  Similarity=0.281  Sum_probs=66.7

Q ss_pred             cccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEee
Q 022663          146 WRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQ  225 (294)
Q Consensus       146 ~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~  225 (294)
                      +..+..|.||-=---+.+.+ .+.-++|||||-++|.|.-+.+++..|.++++. |..+||+||.+-++.-=.-+|+.++
T Consensus       125 ~sLh~~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~RQlella~l~~la~s-GaQ~IiATHSPiLlAiP~A~I~~~~  202 (233)
T COG3910         125 RSLHHMSHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQLELLAILRDLADS-GAQIIIATHSPILLAIPGAEIYEIS  202 (233)
T ss_pred             cchhhhccchHHHHHHHHHh-ccCceEEecCccccCCHHHHHHHHHHHHHHHhc-CCeEEEEecChhheeCCCcEEEEEe
Confidence            34567899998766666654 567899999999999999999999999998764 8999999999876654456788887


Q ss_pred             CCeE
Q 022663          226 DGEL  229 (294)
Q Consensus       226 ~G~i  229 (294)
                      .+.+
T Consensus       203 ~~g~  206 (233)
T COG3910         203 ESGI  206 (233)
T ss_pred             cCCc
Confidence            7764

>PRK06793 fliI flagellum-specific ATP synthase; Validated

Probab=99.37  E-value=2.8e-12  Score=121.14  Aligned_cols=164  Identities=15%  Similarity=0.126  Sum_probs=110.0

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      .++.+.++..|..  +..+++.+ |.+.+|+.++|+|+||+|||||+++|+|...++ .+.+...|.....         
T Consensus       130 ~~~r~~i~~~l~T--GiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~-~gvI~~iGerg~e---------  196 (432)
T PRK06793        130 AFEREEITDVFET--GIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKAD-INVISLVGERGRE---------  196 (432)
T ss_pred             chheechhhccCC--CCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCC-eEEEEeCCCCccc---------
Confidence            5677778877753  24577774 999999999999999999999999999987654 4544433322100         


Q ss_pred             cccccccccccccccCcccccccccHHHHhhcCCCCcHHHHHHHHHHcCCC---cccccccCCHHHHHHHHHHHHHc---
Q 022663           93 LSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDID---LQWRMHKVSDGQRRRVQICMGLL---  166 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~---~~~~~~~LSgGqkqRv~lAraL~---  166 (294)
                                               ..+++           ...+..-++.   .-....+.|.|+|+|++.+.+.+   
T Consensus       197 -------------------------v~e~~-----------~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~~~a~~iAEy  240 (432)
T PRK06793        197 -------------------------VKDFI-----------RKELGEEGMRKSVVVVATSDESHLMQLRAAKLATSIAEY  240 (432)
T ss_pred             -------------------------HHHHH-----------HHHhhhcccceeEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence                                     00000           0001000111   01235678999999999999987   


Q ss_pred             ----cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEec
Q 022663          167 ----HPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRA  232 (294)
Q Consensus       167 ----~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~  232 (294)
                          .++-+|++|+||++.|+.  +++...+.+.-. .|.+..+.||-..    +++|.-....|.|...
T Consensus       241 fr~~G~~VLlilDslTr~a~A~--reisl~~~e~p~-~G~~~~~~s~l~~----L~ERag~~~~GSiT~~  303 (432)
T PRK06793        241 FRDQGNNVLLMMDSVTRFADAR--RSVDIAVKELPI-GGKTLLMESYMKK----LLERSGKTQKGSITGI  303 (432)
T ss_pred             HHHcCCcEEEEecchHHHHHHH--HHHHHHhcCCCC-CCeeeeeeccchh----HHHHhccCCCcceEEE
Confidence                789999999999999996  455555554432 3778888888544    4444444577877543

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=99.35  E-value=8.1e-12  Score=123.05  Aligned_cols=98  Identities=21%  Similarity=0.251  Sum_probs=87.3

Q ss_pred             cccccccCCHHHHHHHHHHHHHccC--CCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceE
Q 022663          144 LQWRMHKVSDGQRRRVQICMGLLHP--FKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHL  221 (294)
Q Consensus       144 ~~~~~~~LSgGqkqRv~lAraL~~~--p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v  221 (294)
                      +++...+|||||.||+-||..+=++  -=+++||||+.||-+.--..+++.|+++. ..|-|||+|.||.+.+. .||+|
T Consensus       475 L~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LR-DlGNTviVVEHDedti~-~AD~i  552 (935)
T COG0178         475 LSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLR-DLGNTVIVVEHDEDTIR-AADHI  552 (935)
T ss_pred             ccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHH-hcCCeEEEEecCHHHHh-hcCEE
Confidence            6888999999999999999999776  35889999999999999999999999875 57999999999988665 69999


Q ss_pred             EEe------eCCeEEecccHHHHHHhhh
Q 022663          222 AYI------QDGELRRAEKLAELDELRN  243 (294)
Q Consensus       222 ~~l------~~G~i~~~g~~~~~~~~~~  243 (294)
                      +-|      +.|+|++.|+++++++...
T Consensus       553 IDiGPgAG~~GGeIv~~Gtp~~i~~~~~  580 (935)
T COG0178         553 IDIGPGAGEHGGEIVAEGTPEELLANPE  580 (935)
T ss_pred             EeeCCCCCcCCCEEEEccCHHHHHhCCc
Confidence            987      4689999999999988754

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=99.34  E-value=1.6e-12  Score=137.78  Aligned_cols=78  Identities=17%  Similarity=0.240  Sum_probs=68.5

Q ss_pred             ccccccCCHHHHHHHHHHHHHc----cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhce
Q 022663          145 QWRMHKVSDGQRRRVQICMGLL----HPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATH  220 (294)
Q Consensus       145 ~~~~~~LSgGqkqRv~lAraL~----~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~  220 (294)
                      +..+..|||||++|++||++++    .+|+++||||||++||+..+..+.++|..+++  +.+||+|||++.++ .+||+
T Consensus      1084 ~~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~--~~~~i~~sh~~~~~-~~~d~ 1160 (1179)
T TIGR02168      1084 NQNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK--NTQFIVITHNKGTM-EVADQ 1160 (1179)
T ss_pred             cccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc--CCEEEEEEcChhHH-HHhhh
Confidence            3567899999999999999984    67799999999999999999999999988753  47899999999976 57999


Q ss_pred             EEEee
Q 022663          221 LAYIQ  225 (294)
Q Consensus       221 v~~l~  225 (294)
                      ++.+.
T Consensus      1161 ~~~~~ 1165 (1179)
T TIGR02168      1161 LYGVT 1165 (1179)
T ss_pred             Heeee
Confidence            97654

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>PRK13830 conjugal transfer protein TrbE; Provisional

Probab=99.33  E-value=1.5e-11  Score=125.89  Aligned_cols=69  Identities=19%  Similarity=0.203  Sum_probs=60.4

Q ss_pred             ccCCCEEEeeCCCCCC-CHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHH---------hhhceEEEeeCCeEEecccH
Q 022663          166 LHPFKVLLLDEITVDL-DVVARMDLLDFFKDECEQRGATIVYATHIFDGLE---------TWATHLAYIQDGELRRAEKL  235 (294)
Q Consensus       166 ~~~p~iLlLDEPt~gL-D~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~---------~~~d~v~~l~~G~i~~~g~~  235 (294)
                      ..+|.++++|||+.+| |+..+..+.++++... +.|.++|++||+++.+.         ..|+++++|.+|++...+..
T Consensus       650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~R-K~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~~  728 (818)
T PRK13830        650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLR-KANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPGTR  728 (818)
T ss_pred             CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHH-HcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccchH
Confidence            5799999999999999 6999999999999875 45899999999999876         57999999999998766543

>PRK00064 recF recombination protein F; Reviewed

Probab=99.26  E-value=1.4e-11  Score=115.14  Aligned_cols=78  Identities=24%  Similarity=0.371  Sum_probs=68.1

Q ss_pred             cccCCHHHHHHHHHHHHHc---------cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhh
Q 022663          148 MHKVSDGQRRRVQICMGLL---------HPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWA  218 (294)
Q Consensus       148 ~~~LSgGqkqRv~lAraL~---------~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~  218 (294)
                      ...+|.||+|+++||++|+         .+|+|||||||+++||+..+..+++.+.++    +..++++||+.+.+...+
T Consensus       271 ~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~----~~qv~it~~~~~~~~~~~  346 (361)
T PRK00064        271 ADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL----GAQVFITTTDLEDLADLL  346 (361)
T ss_pred             HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc----CCEEEEEcCChhhhhhhh
Confidence            3579999999999999996         799999999999999999999999888642    458999999988877764


Q ss_pred             --ceEEEeeCCeE
Q 022663          219 --THLAYIQDGEL  229 (294)
Q Consensus       219 --d~v~~l~~G~i  229 (294)
                        ++++.|++|++
T Consensus       347 ~~~~i~~v~~G~i  359 (361)
T PRK00064        347 ENAKIFHVEQGKI  359 (361)
T ss_pred             ccCcEEEEeCCEE
Confidence              47999999987

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=99.26  E-value=1.1e-11  Score=113.35  Aligned_cols=143  Identities=18%  Similarity=0.182  Sum_probs=91.8

Q ss_pred             eeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcccccccccccccccCcccccc
Q 022663           35 FNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQG  114 (294)
Q Consensus        35 vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (294)
                      +++.+..|+.++|+||+|||||||+++|+|.+++. .+.+.+.......           ..  . ...+      .+. 
T Consensus       137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~-~~iv~ied~~El~-----------~~--~-~~~~------~l~-  194 (308)
T TIGR02788       137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKD-ERIITIEDTREIF-----------LP--H-PNYV------HLF-  194 (308)
T ss_pred             HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCcc-ccEEEEcCccccC-----------CC--C-CCEE------EEE-
Confidence            55778899999999999999999999999987654 5555442211000           00  0 0000      000 


Q ss_pred             cccHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHH
Q 022663          115 DFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFK  194 (294)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~  194 (294)
                              ..  . .               .......|    ..-.++.+|-.+|++|++|||.+       .++++++.
T Consensus       195 --------~~--~-~---------------~~~~~~~~----~~~~l~~~Lr~~pd~ii~gE~r~-------~e~~~~l~  237 (308)
T TIGR02788       195 --------YS--K-G---------------GQGLAKVT----PKDLLQSCLRMRPDRIILGELRG-------DEAFDFIR  237 (308)
T ss_pred             --------ec--C-C---------------CCCcCccC----HHHHHHHHhcCCCCeEEEeccCC-------HHHHHHHH
Confidence                    00  0 0               00000111    12256678889999999999996       34566666


Q ss_pred             HHHHhcCc-EEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHH
Q 022663          195 DECEQRGA-TIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELD  239 (294)
Q Consensus       195 ~~~~~~g~-tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  239 (294)
                      ...  .|. +++.++|..+ +....+|+..|..|++...|.+.+..
T Consensus       238 a~~--~g~~~~i~T~Ha~~-~~~~~~Rl~~l~~~~~~~~g~~~~~~  280 (308)
T TIGR02788       238 AVN--TGHPGSITTLHAGS-PEEAFEQLALMVKSSQAGLGLDFAYI  280 (308)
T ss_pred             HHh--cCCCeEEEEEeCCC-HHHHHHHHHHHhhccccccCCCHHHH
Confidence            553  354 5699999998 55569999999999888877777665

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>PRK02224 chromosome segregation protein; Provisional

Probab=99.25  E-value=1.5e-11  Score=127.30  Aligned_cols=79  Identities=28%  Similarity=0.253  Sum_probs=68.1

Q ss_pred             ccccCCHHHHH------HHHHHHHHccC-----C-CEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCc-EEEEEeCChhH
Q 022663          147 RMHKVSDGQRR------RVQICMGLLHP-----F-KVLLLDEITVDLDVVARMDLLDFFKDECEQRGA-TIVYATHIFDG  213 (294)
Q Consensus       147 ~~~~LSgGqkq------Rv~lAraL~~~-----p-~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~-tviivsHd~~~  213 (294)
                      .+..|||||++      |+++|++++.+     | +++||||||++||+..+..+.++|..+.. .|. +||+||||.++
T Consensus       778 ~~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~-~~~~qviiish~~~~  856 (880)
T PRK02224        778 EPEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRR-LGVEQIVVVSHDDEL  856 (880)
T ss_pred             ChhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHh-cCCCeEEEEECChHH
Confidence            46789999999      89999998863     3 67999999999999999999999988753 354 89999999998


Q ss_pred             HHhhhceEEEeeCC
Q 022663          214 LETWATHLAYIQDG  227 (294)
Q Consensus       214 ~~~~~d~v~~l~~G  227 (294)
                      +. .||+++.|...
T Consensus       857 ~~-~ad~~~~~~~~  869 (880)
T PRK02224        857 VG-AADDLVRVEKD  869 (880)
T ss_pred             HH-hcCeeEEeecC
Confidence            85 69999999754

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=99.24  E-value=1.5e-10  Score=101.78  Aligned_cols=75  Identities=13%  Similarity=0.179  Sum_probs=54.4

Q ss_pred             cCCHHHHHHHHHHHHHcc--CCCEEEeeCCCCCC---CHHHHHHHHHHHHHHHHhcCcEEEEEeCChhH-------HHhh
Q 022663          150 KVSDGQRRRVQICMGLLH--PFKVLLLDEITVDL---DVVARMDLLDFFKDECEQRGATIVYATHIFDG-------LETW  217 (294)
Q Consensus       150 ~LSgGqkqRv~lAraL~~--~p~iLlLDEPt~gL---D~~~~~~l~~~l~~~~~~~g~tviivsHd~~~-------~~~~  217 (294)
                      ..|.++.+.+..+..++.  +|+++++||||+.+   |......+++.+..++ +.+.|+++++|+..+       +..+
T Consensus       100 ~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~-~~g~tvllt~~~~~~~~~~~~~~~~l  178 (234)
T PRK06067        100 WNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLV-DLGKTILITLHPYAFSEELLSRIRSI  178 (234)
T ss_pred             cCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCcCCHHHHHHHHhh
Confidence            456788999999999887  99999999999654   4444445555565544 458999999998765       3445


Q ss_pred             hceEEEee
Q 022663          218 ATHLAYIQ  225 (294)
Q Consensus       218 ~d~v~~l~  225 (294)
                      +|-++.|+
T Consensus       179 ~DgvI~L~  186 (234)
T PRK06067        179 CDVYLKLR  186 (234)
T ss_pred             eEEEEEEE
Confidence            55555554

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=99.23  E-value=1.5e-11  Score=130.44  Aligned_cols=78  Identities=14%  Similarity=0.184  Sum_probs=68.6

Q ss_pred             cccccCCHHHHHHHHHHHHHcc----CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceE
Q 022663          146 WRMHKVSDGQRRRVQICMGLLH----PFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHL  221 (294)
Q Consensus       146 ~~~~~LSgGqkqRv~lAraL~~----~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v  221 (294)
                      +++..|||||+++++||++|+.    +|+++|||||+++||+..+..+.++|.++..  +.++|+|||+...+ .+||++
T Consensus      1070 ~~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~--~~~~i~~t~~~~~~-~~~d~~ 1146 (1164)
T TIGR02169      1070 QRLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG--EAQFIVVSLRSPMI-EYADRA 1146 (1164)
T ss_pred             CcchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC--CCeEEEEECcHHHH-Hhccee
Confidence            4567899999999999999984    7899999999999999999999999988743  57899999998755 689999


Q ss_pred             EEeeC
Q 022663          222 AYIQD  226 (294)
Q Consensus       222 ~~l~~  226 (294)
                      +.+..
T Consensus      1147 ~~~~~ 1151 (1164)
T TIGR02169      1147 IGVTM 1151 (1164)
T ss_pred             EeEEE
Confidence            87754

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=99.21  E-value=8.9e-11  Score=95.96  Aligned_cols=64  Identities=13%  Similarity=0.164  Sum_probs=47.4

Q ss_pred             cCCHHHHHHHHHHHHHccCCCEEEeeCCCC----------CCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHH
Q 022663          150 KVSDGQRRRVQICMGLLHPFKVLLLDEITV----------DLDVVARMDLLDFFKDECEQRGATIVYATHIFDGL  214 (294)
Q Consensus       150 ~LSgGqkqRv~lAraL~~~p~iLlLDEPt~----------gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~  214 (294)
                      ..+.++.++++.+++...+|+++++|||++          +.|......+.+++. ..++.+.|+|+++|.....
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~~~~~vv~~~~~~~~~  140 (165)
T cd01120          67 DPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLE-RARKGGVTVIFTLQVPSGD  140 (165)
T ss_pred             CCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHH-HHhcCCceEEEEEecCCcc
Confidence            344556668888999999999999999995          445455566655554 4455699999999987543

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=99.15  E-value=4.8e-11  Score=91.65  Aligned_cols=46  Identities=17%  Similarity=0.226  Sum_probs=39.1

Q ss_pred             CCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcc
Q 022663           29 PPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSS   81 (294)
Q Consensus        29 ~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~   81 (294)
                      ..+|++++|++++|++++|+||||||||||++++.       .|.+.+.+.+.
T Consensus         2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~-------~G~i~~~g~di   47 (107)
T cd00820           2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI-------KRKHRLVGDDN   47 (107)
T ss_pred             ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh-------CCeEEEeeEeH
Confidence            46899999999999999999999999999999986       34566666543

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>TIGR00611 recf recF protein

Probab=99.07  E-value=3e-10  Score=106.22  Aligned_cols=62  Identities=26%  Similarity=0.438  Sum_probs=56.6

Q ss_pred             cCCHHHHHHHHHHHHHcc---------CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHH
Q 022663          150 KVSDGQRRRVQICMGLLH---------PFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLE  215 (294)
Q Consensus       150 ~LSgGqkqRv~lAraL~~---------~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~  215 (294)
                      .+|.||+|+++||.+|+.         +|+|||||||+++||+..+..+++.|.+.    |.+|+++||+++.+.
T Consensus       275 ~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~----~~qv~it~~~~~~~~  345 (365)
T TIGR00611       275 FASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL----GVQVFVTAISLDHLK  345 (365)
T ss_pred             hcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc----CCEEEEEecChhhcc
Confidence            589999999999999999         99999999999999999999999988642    679999999987655

All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK05399 DNA mismatch repair protein MutS; Provisional

Probab=99.07  E-value=1.2e-09  Score=112.20  Aligned_cols=69  Identities=22%  Similarity=0.158  Sum_probs=49.3

Q ss_pred             ccCCHHHHHHHHHHHHHcc--CCCEEEeeCC---CCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhce
Q 022663          149 HKVSDGQRRRVQICMGLLH--PFKVLLLDEI---TVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATH  220 (294)
Q Consensus       149 ~~LSgGqkqRv~lAraL~~--~p~iLlLDEP---t~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~  220 (294)
                      ..+|.=+.....++.+|-.  ++.++|+|||   |+.+|..+  ..+.++..+.+..+.++|++||+.+ +..++++
T Consensus       665 ~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~a--ia~aile~l~~~~~~~~l~aTH~~e-l~~l~~~  738 (854)
T PRK05399        665 SGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGLS--IAWAVAEYLHDKIGAKTLFATHYHE-LTELEEK  738 (854)
T ss_pred             cCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhHH--HHHHHHHHHHhcCCceEEEEechHH-HHHHhhh
Confidence            4577777777777777654  9999999999   99999544  3444555554433589999999955 4456664

>cd01125 repA Hexameric Replicative Helicase RepA

Probab=99.05  E-value=8.3e-10  Score=97.39  Aligned_cols=48  Identities=21%  Similarity=0.274  Sum_probs=41.4

Q ss_pred             HHccCCCEEEeeCCCCC------CCHHHHHHHHHHHHHHHHhcCcEEEEEeCChh
Q 022663          164 GLLHPFKVLLLDEITVD------LDVVARMDLLDFFKDECEQRGATIVYATHIFD  212 (294)
Q Consensus       164 aL~~~p~iLlLDEPt~g------LD~~~~~~l~~~l~~~~~~~g~tviivsHd~~  212 (294)
                      +...+|+++|+| |++.      +|+.....+++.|.+++++.|.+||+++|...
T Consensus       107 ~~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K  160 (239)
T cd01125         107 LLIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK  160 (239)
T ss_pred             HHhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence            346799999999 7754      79999999999999988888999999999864

RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.

>TIGR03238 dnd_assoc_3 dnd system-associated protein 3

Probab=99.05  E-value=1.6e-10  Score=109.56  Aligned_cols=51  Identities=24%  Similarity=0.352  Sum_probs=44.6

Q ss_pred             CceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccc
Q 022663           30 PLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSF   82 (294)
Q Consensus        30 ~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~   82 (294)
                      .+|++|||+|++||+++|+|||||||||||+  +|+..|+.+|.+.++|.+..
T Consensus        20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~   70 (504)
T TIGR03238        20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSF   70 (504)
T ss_pred             HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECC
Confidence            4899999999999999999999999999999  77777775557888887654

cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=99.02  E-value=8.8e-10  Score=114.48  Aligned_cols=79  Identities=20%  Similarity=0.257  Sum_probs=68.9

Q ss_pred             cccccCCHHHHHHHHHHHHHc------cC--CCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhh
Q 022663          146 WRMHKVSDGQRRRVQICMGLL------HP--FKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETW  217 (294)
Q Consensus       146 ~~~~~LSgGqkqRv~lAraL~------~~--p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~  217 (294)
                      +.+..|||||+-.++||.+|+      .+  -++|+|||||..||+..+..+++.|..+... +.+|+||||+.++.. .
T Consensus       811 r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~-~~qiiIISH~eel~e-~  888 (908)
T COG0419         811 RPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSD-GRQIIIISHVEELKE-R  888 (908)
T ss_pred             cccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhc-CCeEEEEeChHHHHH-h
Confidence            567899999999888887765      45  6999999999999999999999999998654 899999999998765 6


Q ss_pred             hceEEEeeC
Q 022663          218 ATHLAYIQD  226 (294)
Q Consensus       218 ~d~v~~l~~  226 (294)
                      +|+++.+..
T Consensus       889 ~~~~i~V~k  897 (908)
T COG0419         889 ADVRIRVKK  897 (908)
T ss_pred             CCeEEEEEe
Confidence            888888765

>cd01131 PilT Pilus retraction ATPase PilT

Probab=98.99  E-value=2.1e-09  Score=92.20  Aligned_cols=57  Identities=12%  Similarity=0.127  Sum_probs=41.8

Q ss_pred             HHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEee
Q 022663          160 QICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQ  225 (294)
Q Consensus       160 ~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~  225 (294)
                      +++++|..+|+++++|||.   |.+....+   + +.+ ..|..++.++|..+.. ...+|++.+.
T Consensus        66 ~i~~aLr~~pd~ii~gEir---d~e~~~~~---l-~~a-~~G~~v~~t~Ha~~~~-~~~~Rl~~l~  122 (198)
T cd01131          66 ALKAALRQDPDVILVGEMR---DLETIRLA---L-TAA-ETGHLVMSTLHTNSAA-KTIDRIIDVF  122 (198)
T ss_pred             HHHHHhcCCcCEEEEcCCC---CHHHHHHH---H-HHH-HcCCEEEEEecCCcHH-HHHhHHHhhc
Confidence            5889999999999999996   66543333   3 333 3588999999998755 4567876653

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=98.96  E-value=3.6e-08  Score=77.56  Aligned_cols=63  Identities=25%  Similarity=0.190  Sum_probs=47.9

Q ss_pred             cccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHH-----HHHHHHHhcCcEEEEEeCC
Q 022663          148 MHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLD-----FFKDECEQRGATIVYATHI  210 (294)
Q Consensus       148 ~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~-----~l~~~~~~~g~tviivsHd  210 (294)
                      .....+++..+..++++--..|.+|++||+..-.+.........     .........+..+|+++|.
T Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  125 (148)
T smart00382       58 KASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND  125 (148)
T ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence            44678888888888888888899999999999999888776553     1122233457788999984

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PRK14079 recF recombination protein F; Provisional

Probab=98.95  E-value=2e-09  Score=100.24  Aligned_cols=77  Identities=27%  Similarity=0.279  Sum_probs=62.9

Q ss_pred             cCCHHHHHHHHHHHHHc---------cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhce
Q 022663          150 KVSDGQRRRVQICMGLL---------HPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATH  220 (294)
Q Consensus       150 ~LSgGqkqRv~lAraL~---------~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~  220 (294)
                      -+|+||+++++||..|+         .+|+++|||||+++||...+..+.+.|...    ..++|..|+    ...+|++
T Consensus       263 ~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~----~q~~it~t~----~~~~~~~  334 (349)
T PRK14079        263 YASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASL----PQAIVAGTE----APPGAAL  334 (349)
T ss_pred             hCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcC----CcEEEEcCC----CCCCCce
Confidence            58999999999999999         899999999999999999999999888542    224444443    3468999


Q ss_pred             EEEeeCCeEEeccc
Q 022663          221 LAYIQDGELRRAEK  234 (294)
Q Consensus       221 v~~l~~G~i~~~g~  234 (294)
                      ++.+++|++.-..+
T Consensus       335 ~~~~~~~~~~~~~~  348 (349)
T PRK14079        335 TLRIEAGVFTPEAP  348 (349)
T ss_pred             EEEEeccEecCCCC
Confidence            99999998865543

>TIGR01026 fliI_yscN ATPase FliI/YscN family

Probab=98.95  E-value=9.3e-09  Score=98.02  Aligned_cols=184  Identities=17%  Similarity=0.176  Sum_probs=101.0

Q ss_pred             CCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCccccccc-cccccccc
Q 022663           29 PPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGS-WSKTVGSA  107 (294)
Q Consensus        29 ~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  107 (294)
                      ..+++++ |.+.+|++++|+|+||+|||||+++|+|...++ .+.+...|.....-... ...   ..... ..+.+-.+
T Consensus       151 i~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~-~~vi~~iG~r~~ev~~~-~~~---~~~~~~l~~tvvv~  224 (440)
T TIGR01026       151 VRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEAD-VNVIALIGERGREVREF-IEH---DLGEEGLKRSVVVV  224 (440)
T ss_pred             eeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCC-EEEEEEEeecchHHHHH-HHH---HhcccccceEEEEE
Confidence            4689999 999999999999999999999999999987664 44444444321100000 000   00000 00000000


Q ss_pred             CcccccccccHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCH-HHHHHHHHHHHHccCCCEEEeeCC--CCCCCHH
Q 022663          108 GEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSD-GQRRRVQICMGLLHPFKVLLLDEI--TVDLDVV  184 (294)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSg-GqkqRv~lAraL~~~p~iLlLDEP--t~gLD~~  184 (294)
                      ..   ...-....+....   ..-...+.+...+.+----+.+|+- -|.+| .|+         +.+.||  +.|+|+.
T Consensus       225 ~~---~d~~p~~r~~~~~---~a~t~AE~frd~G~~Vll~~DslTr~A~A~R-Eis---------l~~ge~P~~~Gypp~  288 (440)
T TIGR01026       225 AT---SDQSPLLRLKGAY---VATAIAEYFRDQGKDVLLLMDSVTRFAMAQR-EIG---------LAAGEPPATKGYTPS  288 (440)
T ss_pred             EC---CCCCHHHHHHHHH---HHHHHHHHHHHCCCCEEEEEeChHHHHHHHH-HHH---------HhcCCCCcccccChh
Confidence            00   0000000000000   0001112221122210001122322 22222 222         345675  6699999


Q ss_pred             HHHHHHHHHHHHHHhcCc-------EEEEEeCChhHHHhhhceEEEeeCCeEEecccHHH
Q 022663          185 ARMDLLDFFKDECEQRGA-------TIVYATHIFDGLETWATHLAYIQDGELRRAEKLAE  237 (294)
Q Consensus       185 ~~~~l~~~l~~~~~~~g~-------tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~  237 (294)
                      ....+.+++.+... .+.       ||++.+||+.  +.++|++..+.+|+|+.+...++
T Consensus       289 ~~~~l~~l~ERag~-~~~GSIT~i~tVl~~~~d~~--dpi~d~~~~i~dG~ivLsr~la~  345 (440)
T TIGR01026       289 VFSTLPRLLERAGA-SGKGSITAFYTVLVEGDDMN--EPIADSVRGILDGHIVLSRALAQ  345 (440)
T ss_pred             HHHHHHHHHHHhcc-CCCCeeeEEEEEEccCcCCC--cchhhhhccccceEEEEecchhh
Confidence            99999999988653 467       8999999984  66899999999999998776654

This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=98.90  E-value=1.5e-10  Score=112.28  Aligned_cols=70  Identities=16%  Similarity=0.219  Sum_probs=54.7

Q ss_pred             ccccccCCHHHHHHHHHH--HHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhH---------
Q 022663          145 QWRMHKVSDGQRRRVQIC--MGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDG---------  213 (294)
Q Consensus       145 ~~~~~~LSgGqkqRv~lA--raL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~---------  213 (294)
                      ++.+..+|+|++|||.|+  .+|...|+.+          ...+..+++++..+. +.|.|+|++||+.+.         
T Consensus       110 ~~i~~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l~~Li~~L~-~~g~TvLLtsh~~~~~~~~~~~~~  178 (484)
T TIGR02655       110 ERINYAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRREIFRLVARLK-QIGVTTVMTTERIEEYGPIARYGV  178 (484)
T ss_pred             HHHHHHHHHhCCcEEEEeehhHhhhhcCch----------HHHHHHHHHHHHHHH-HCCCEEEEEecCcccccccccCCc
Confidence            456678999999999999  5665555444          467788888887765 569999999998764         


Q ss_pred             HHhhhceEEEee
Q 022663          214 LETWATHLAYIQ  225 (294)
Q Consensus       214 ~~~~~d~v~~l~  225 (294)
                      ...+||.|+.|+
T Consensus       179 ~e~laDgVI~L~  190 (484)
T TIGR02655       179 EEFVSDNVVILR  190 (484)
T ss_pred             eeEeeeeEEEEE
Confidence            266789999887

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>PF00488 MutS_V: MutS domain V C-terminus

Probab=98.89  E-value=5e-08  Score=85.86  Aligned_cols=51  Identities=16%  Similarity=0.165  Sum_probs=38.4

Q ss_pred             ccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHh-cCcEEEEEeCChhHHHh
Q 022663          166 LHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQ-RGATIVYATHIFDGLET  216 (294)
Q Consensus       166 ~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~-~g~tviivsHd~~~~~~  216 (294)
                      +.+..++|+||+..|=++.....+...+.+...+ .+..+|++||+.+....
T Consensus       120 ~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~~l~~~  171 (235)
T PF00488_consen  120 ATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFHELAEL  171 (235)
T ss_dssp             --TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-GGGGGH
T ss_pred             cccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccchhHHH
Confidence            5678899999999999999988877766666555 47889999999986443

; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....

>PRK13891 conjugal transfer protein TrbE; Provisional

Probab=98.85  E-value=4.4e-08  Score=100.98  Aligned_cols=69  Identities=16%  Similarity=0.121  Sum_probs=55.1

Q ss_pred             HHHHHccCCCEEEeeCCCCCC-CHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHh--hhceEEEeeCCeEE
Q 022663          161 ICMGLLHPFKVLLLDEITVDL-DVVARMDLLDFFKDECEQRGATIVYATHIFDGLET--WATHLAYIQDGELR  230 (294)
Q Consensus       161 lAraL~~~p~iLlLDEPt~gL-D~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~--~~d~v~~l~~G~i~  230 (294)
                      |++++..+|.++++|||+.+| |+..+..+.++++.+.+ .|.+++++||+++.+..  .++.++.....+|.
T Consensus       680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK-~g~~vil~TQs~~d~~~s~i~~~ilen~~t~I~  751 (852)
T PRK13891        680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRK-ANCLVLMATQSLSDAANSGILDVIVESTATKIF  751 (852)
T ss_pred             HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHhhCchHHHHHHcCCccee
Confidence            677888999999999999999 79999999999988754 58999999999998875  34444434444444

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=98.82  E-value=6.3e-09  Score=111.66  Aligned_cols=62  Identities=23%  Similarity=0.292  Sum_probs=54.1

Q ss_pred             cccccCCHHHHHHHH----HHHH--------HccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCh
Q 022663          146 WRMHKVSDGQRRRVQ----ICMG--------LLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIF  211 (294)
Q Consensus       146 ~~~~~LSgGqkqRv~----lAra--------L~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~  211 (294)
                      +.++.|||||||+++    +|++        +..+|+++||||||+|||+.++..++++|.++    +.++||+||.+
T Consensus      1243 ~~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l----~~~~i~~s~~~ 1316 (1353)
T TIGR02680      1243 HRFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL----DLDFVMTSERE 1316 (1353)
T ss_pred             ccccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh----CCCEEEEccch
Confidence            346789999999996    5655        55899999999999999999999999998765    78999999986

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>TIGR00152 dephospho-CoA kinase

Probab=98.82  E-value=4.1e-09  Score=89.50  Aligned_cols=72  Identities=11%  Similarity=0.063  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhH--HHhhhceEEEeeCC
Q 022663          153 DGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDG--LETWATHLAYIQDG  227 (294)
Q Consensus       153 gGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~--~~~~~d~v~~l~~G  227 (294)
                      .|+-+|..||.++..+|+.+..+|  +.+||..+..+.+.+.+.. +.|.+||+.+|.+.+  +..+||++++++.+
T Consensus        60 ~g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~-~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~  133 (188)
T TIGR00152        60 DGELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQ-SKLAYVLLDVPLLFENKLRSLCDRVIVVDVS  133 (188)
T ss_pred             CCCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhh-cCCCEEEEEchHhhhCCcHHhCCEEEEEECC
Confidence            388999999999999999988887  7899999999999987764 336799999999955  77889999998765

This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.

>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A

Probab=98.78  E-value=2.2e-08  Score=86.90  Aligned_cols=66  Identities=23%  Similarity=0.321  Sum_probs=54.0

Q ss_pred             cccCCHHHHHHHHHHHHHccCC---CEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHH
Q 022663          148 MHKVSDGQRRRVQICMGLLHPF---KVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGL  214 (294)
Q Consensus       148 ~~~LSgGqkqRv~lAraL~~~p---~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~  214 (294)
                      ...+|.|++|.+.|+.++...+   .++++|||-++|.|..+..++++|.+... .+..||++||.+.++
T Consensus       234 ~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~-~~~QviitTHSp~il  302 (303)
T PF13304_consen  234 LSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSK-KNIQVIITTHSPFIL  302 (303)
T ss_dssp             GS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGG-GSSEEEEEES-GGG-
T ss_pred             eccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCc-cCCEEEEeCccchhc
Confidence            4567999999999998888766   89999999999999999999999977654 478999999998765

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=98.71  E-value=1.9e-08  Score=86.04  Aligned_cols=111  Identities=18%  Similarity=0.204  Sum_probs=61.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcccccccccccccccCcccccccccHHHHhh
Q 022663           44 RCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIF  123 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (294)
                      ++||+||||||||||.++|++++  . .+.+.+.+.+.+....       ..  .............+            
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~l--~-~~~~~v~~~D~~~~~~-------~~--~~~~~~~~~~~~~~------------   56 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQL--G-NPKVVIISQDSYYKDL-------SH--EELEERKNNNYDHP------------   56 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh--C-CCCeEEEEeccccccc-------cc--ccHHHhccCCCCCC------------
Confidence            58999999999999999999976  2 2223222222111000       00  00000000000000            


Q ss_pred             cCCCCcHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCH
Q 022663          124 GVEGSDPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDV  183 (294)
Q Consensus       124 ~~~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~  183 (294)
                        ...+.+...+.+..+...  ...+..++|.|++++..+   .+.+|+++|+|.|+.+.++
T Consensus        57 --~~~~~~~~~~~l~~l~~~~~~~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~  113 (198)
T cd02023          57 --DAFDFDLLISHLQDLKNGKSVEIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDK  113 (198)
T ss_pred             --CcccHHHHHHHHHHHHCCCCEeccccccccCcccCCce---ecCCCCEEEEechhhccch
Confidence              011122233344444332  355667888888876655   5788999999999999986

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>TIGR00416 sms DNA repair protein RadA

Probab=98.68  E-value=2.3e-07  Score=89.19  Aligned_cols=62  Identities=16%  Similarity=0.201  Sum_probs=45.9

Q ss_pred             cCCCEEEeeCCCCCC---------CHHHHHHHHHHHHHHHHhcCcEEEEEeCChhH--------HHhhhceEEEeeCCe
Q 022663          167 HPFKVLLLDEITVDL---------DVVARMDLLDFFKDECEQRGATIVYATHIFDG--------LETWATHLAYIQDGE  228 (294)
Q Consensus       167 ~~p~iLlLDEPt~gL---------D~~~~~~l~~~l~~~~~~~g~tviivsHd~~~--------~~~~~d~v~~l~~G~  228 (294)
                      .+|+++++|.-++=.         +....+++...|.+++++.|.|+|+++|....        ++.++|.|+.|+.++
T Consensus       169 ~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hvtkeg~~aG~~~le~lvD~VI~Le~~~  247 (454)
T TIGR00416       169 ENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDR  247 (454)
T ss_pred             cCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEeccccCCccCCcccEeeeceEEEEEeccC
Confidence            589999999765421         12234456666778888889999999996543        677899999998654

The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).

>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family

Probab=98.68  E-value=2e-07  Score=81.42  Aligned_cols=26  Identities=35%  Similarity=0.480  Sum_probs=23.6

Q ss_pred             EEeCCCEEEEECCCCCcHHHHHHHHh
Q 022663           38 GISPGSRCLLVGANGSGKTTLLKILA   63 (294)
Q Consensus        38 ~i~~Ge~~~liG~NGsGKSTLlk~i~   63 (294)
                      -+++|++++|.|++|||||||...++
T Consensus        16 Gi~~G~~~~i~G~~G~GKT~l~~~~~   41 (229)
T TIGR03881        16 GIPRGFFVAVTGEPGTGKTIFCLHFA   41 (229)
T ss_pred             CCcCCeEEEEECCCCCChHHHHHHHH
Confidence            58899999999999999999988654

Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.

>PRK06002 fliI flagellum-specific ATP synthase; Validated

Probab=98.68  E-value=4.7e-08  Score=92.86  Aligned_cols=64  Identities=19%  Similarity=0.276  Sum_probs=54.1

Q ss_pred             cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecC
Q 022663           11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLN   78 (294)
Q Consensus        11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~   78 (294)
                      .+.++.+++++.|..  +..+++.++ +|.+|++++|+||||||||||+++|+|+..++ .+.+.+.|
T Consensus       137 p~~~~r~~v~~~l~T--Gi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd-~gvv~liG  200 (450)
T PRK06002        137 PPAMTRARVETGLRT--GVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFD-TVVIALVG  200 (450)
T ss_pred             CCCeEeecceEEcCC--CcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCC-eeeeeecc
Confidence            457899999999964  256888885 99999999999999999999999999987775 66666554

>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A

Probab=98.65  E-value=6.7e-08  Score=72.28  Aligned_cols=50  Identities=20%  Similarity=0.334  Sum_probs=38.3

Q ss_pred             ccccccCCHHHHH-HHHHHHHH------cc------CCCEEEeeCCCCCCCHHHHHHHHHHHH
Q 022663          145 QWRMHKVSDGQRR-RVQICMGL------LH------PFKVLLLDEITVDLDVVARMDLLDFFK  194 (294)
Q Consensus       145 ~~~~~~LSgGqkq-Rv~lAraL------~~------~p~iLlLDEPt~gLD~~~~~~l~~~l~  194 (294)
                      .+..+.+||||+| .+.+|.++      ..      .|++++|||||++||+..+..++++|+
T Consensus        27 ~~~~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~   89 (90)
T PF13558_consen   27 SRSFGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLR   89 (90)
T ss_dssp             EEEGGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHH
T ss_pred             eccCCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHh
Confidence            3567899999994 44444333      23      379999999999999999999999886

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=98.64  E-value=2.7e-07  Score=85.74  Aligned_cols=45  Identities=18%  Similarity=0.189  Sum_probs=34.5

Q ss_pred             HHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChh
Q 022663          160 QICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFD  212 (294)
Q Consensus       160 ~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~  212 (294)
                      +|+++|-.+|++|++||+.   |+++....++    .+ ..|.+|+.+.|-.+
T Consensus       187 ~l~~~lr~~pd~i~vgEir---d~~~~~~~l~----aa-~tGh~v~~T~Ha~~  231 (343)
T TIGR01420       187 ALRAALREDPDVILIGEMR---DLETVELALT----AA-ETGHLVFGTLHTNS  231 (343)
T ss_pred             HHHHhhccCCCEEEEeCCC---CHHHHHHHHH----HH-HcCCcEEEEEcCCC
Confidence            4677899999999999997   8877654333    22 45899999999754

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>PLN03210 Resistant to P

Probab=98.62  E-value=1.6e-07  Score=99.99  Aligned_cols=42  Identities=21%  Similarity=0.199  Sum_probs=32.4

Q ss_pred             eeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEe
Q 022663           35 FNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQV   76 (294)
Q Consensus        35 vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~   76 (294)
                      +++...++.+++|+|++|+|||||++.+.+.+.....|.+.+
T Consensus       200 L~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv  241 (1153)
T PLN03210        200 LHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFI  241 (1153)
T ss_pred             HccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEe
Confidence            567788999999999999999999999977543332344433

syringae 6; Provisional

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=98.60  E-value=5.9e-08  Score=66.96  Aligned_cols=36  Identities=36%  Similarity=0.584  Sum_probs=29.1

Q ss_pred             eeeeeEEEeC-CCEEEEECCCCCcHHHHHHHHhCCcc
Q 022663           32 FYDFNLGISP-GSRCLLVGANGSGKTTLLKILAGKHM   67 (294)
Q Consensus        32 L~~vsl~i~~-Ge~~~liG~NGsGKSTLlk~i~G~~~   67 (294)
                      +++.++++.+ |+++.|.||||||||||+.+|.=++.
T Consensus        12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~   48 (62)
T PF13555_consen   12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLY   48 (62)
T ss_pred             cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHc
Confidence            4556777775 57999999999999999999875443

>TIGR00767 rho transcription termination factor Rho

Probab=98.60  E-value=9.3e-08  Score=89.39  Aligned_cols=53  Identities=26%  Similarity=0.299  Sum_probs=47.6

Q ss_pred             ccEEEcceEEEcCCCCCCCcee-----------eeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCc
Q 022663           12 NSIKVCGMQFSYEGNDKPPLFY-----------DFNLGISPGSRCLLVGANGSGKTTLLKILAGKH   66 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~~~~iL~-----------~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~   66 (294)
                      .-+.++||++.|++  .+.+|+           |+++.|.+|+.++|+||.|||||||++.|+..+
T Consensus       129 ~ri~Fe~LTf~YP~--er~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I  192 (415)
T TIGR00767       129 NRVLFENLTPLYPN--ERLRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAI  192 (415)
T ss_pred             CCeEEEEeeecCCC--ccceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhh
Confidence            36999999999986  346886           999999999999999999999999999998854

Members of this family differ in the specificity of RNA binding.

>cd01121 Sms Sms (bacterial radA) DNA repair protein

Probab=98.60  E-value=8.8e-07  Score=83.00  Aligned_cols=62  Identities=16%  Similarity=0.226  Sum_probs=44.8

Q ss_pred             cCCCEEEeeCCCC----CCC-----HHHHHHHHHHHHHHHHhcCcEEEEEeCChh--------HHHhhhceEEEeeCCe
Q 022663          167 HPFKVLLLDEITV----DLD-----VVARMDLLDFFKDECEQRGATIVYATHIFD--------GLETWATHLAYIQDGE  228 (294)
Q Consensus       167 ~~p~iLlLDEPt~----gLD-----~~~~~~l~~~l~~~~~~~g~tviivsHd~~--------~~~~~~d~v~~l~~G~  228 (294)
                      .+|+++++|+-.+    .+|     ....+++...|.+++++.+.|+|++.|-..        .++.++|.|+.++..+
T Consensus       157 ~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~~itvilvghvtk~g~~aG~~~leh~vD~Vi~le~~~  235 (372)
T cd01121         157 LKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDR  235 (372)
T ss_pred             cCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCcccCcccchhhceEEEEEEcCC
Confidence            5899999999532    232     233445566677788888999999999432        3678899999987543

This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.

>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases

Probab=98.59  E-value=9.4e-07  Score=79.15  Aligned_cols=35  Identities=31%  Similarity=0.531  Sum_probs=31.4

Q ss_pred             CceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhC
Q 022663           30 PLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        30 ~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G   64 (294)
                      +.|+.+.--+.+|+++.|.|++|+|||||+..++-
T Consensus        18 ~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~   52 (271)
T cd01122          18 PVLNKLTKGLRKGELIILTAGTGVGKTTFLREYAL   52 (271)
T ss_pred             ceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHH
Confidence            45888888899999999999999999999988765

Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.

>PRK13898 type IV secretion system ATPase VirB4; Provisional

Probab=98.58  E-value=1.2e-06  Score=90.18  Aligned_cols=52  Identities=19%  Similarity=0.207  Sum_probs=44.6

Q ss_pred             HHccCCCEEEeeCCCCCCC-HHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHh
Q 022663          164 GLLHPFKVLLLDEITVDLD-VVARMDLLDFFKDECEQRGATIVYATHIFDGLET  216 (294)
Q Consensus       164 aL~~~p~iLlLDEPt~gLD-~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~  216 (294)
                      .+..+|.++++|||...|| +.....+.++++... +.|..++++||+++.+..
T Consensus       638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~R-K~~~~~i~~TQ~~~d~~~  690 (800)
T PRK13898        638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLR-KLNTFVIFATQSVEDASK  690 (800)
T ss_pred             HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHH-HcCCEEEEEeCCHHHHHh
Confidence            3457899999999999999 888889999998875 568899999999987654

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=98.58  E-value=2.9e-08  Score=84.22  Aligned_cols=47  Identities=26%  Similarity=0.309  Sum_probs=39.1

Q ss_pred             ceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecC
Q 022663           31 LFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLN   78 (294)
Q Consensus        31 iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~   78 (294)
                      ..+=+.+.+.+|+.++|+||||||||||+++|+|+++++ .+.+.+.+
T Consensus        14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~-~~~i~ied   60 (186)
T cd01130          14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPD-ERIITIED   60 (186)
T ss_pred             HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCC-CCEEEECC
Confidence            445567889999999999999999999999999988765 66666543

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>TIGR01070 mutS1 DNA mismatch repair protein MutS

Probab=98.56  E-value=7.5e-07  Score=91.52  Aligned_cols=51  Identities=20%  Similarity=0.174  Sum_probs=35.0

Q ss_pred             HccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHh-cCcEEEEEeCChhHHH
Q 022663          165 LLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQ-RGATIVYATHIFDGLE  215 (294)
Q Consensus       165 L~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~-~g~tviivsHd~~~~~  215 (294)
                      -+.++.++|+||+-.|-|+.....+...+.+...+ .+..++++||..++..
T Consensus       668 ~at~~sLvllDE~GrGT~~~dg~aia~ai~e~l~~~~~~~~~~~TH~~eL~~  719 (840)
T TIGR01070       668 NATENSLVLFDEIGRGTSTYDGLALAWAIAEYLHEHIRAKTLFATHYFELTA  719 (840)
T ss_pred             hCCCCEEEEEccCCCCCChhHHHHHHHHHHHHHHhcCCCEEEEEcCchHHHH
Confidence            36789999999996666655555544444333333 5788999999987543

>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=98.49  E-value=3.8e-06  Score=78.97  Aligned_cols=81  Identities=16%  Similarity=0.149  Sum_probs=65.6

Q ss_pred             ccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHH---------------HHHHHHHHHhcCcEEEEEeCChhH
Q 022663          149 HKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDL---------------LDFFKDECEQRGATIVYATHIFDG  213 (294)
Q Consensus       149 ~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l---------------~~~l~~~~~~~g~tviivsHd~~~  213 (294)
                      .+=||-.-|=..|..||=..+++||+||=|++-..--++..               .+.++.+.++.|.+.|+|+=-...
T Consensus       321 ~~ASGSTSqAAnI~EAlE~Ga~~LLiDEDtsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~~~GvStIlV~Ggsgd  400 (448)
T PF09818_consen  321 ENASGSTSQAANIMEALEAGARLLLIDEDTSATNFMIRDERMQALVSKEKEPITPFIDRVRSLYEKLGVSTILVVGGSGD  400 (448)
T ss_pred             cCCCchHHHHHHHHHHHHcCCCEEEEcCcccchheeehhHHHHHhhccCCCCcchHHHHHHHHHHHcCceEEEEeccchh
Confidence            46799999999999999999999999999998754443322               344556667789988888888888


Q ss_pred             HHhhhceEEEeeCCeE
Q 022663          214 LETWATHLAYIQDGEL  229 (294)
Q Consensus       214 ~~~~~d~v~~l~~G~i  229 (294)
                      ....||+|+.|++=+.
T Consensus       401 y~~vAD~Vi~Md~Y~~  416 (448)
T PF09818_consen  401 YFDVADRVIMMDEYRP  416 (448)
T ss_pred             hHhhCCEEEEecCccc
Confidence            8889999999998543

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.48  E-value=4.8e-07  Score=87.00  Aligned_cols=38  Identities=26%  Similarity=0.347  Sum_probs=33.0

Q ss_pred             ceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCccc
Q 022663           31 LFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMV   68 (294)
Q Consensus        31 iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~   68 (294)
                      ++++.++.+.+|.+++|+||||+||||++..|++.+..
T Consensus       245 ~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~  282 (484)
T PRK06995        245 VLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVM  282 (484)
T ss_pred             hccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHH
Confidence            45677778889999999999999999999999996644

>PRK07594 type III secretion system ATPase SsaN; Validated

Probab=98.47  E-value=2.2e-07  Score=88.11  Aligned_cols=65  Identities=17%  Similarity=0.179  Sum_probs=53.7

Q ss_pred             ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCc
Q 022663           12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRS   80 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~   80 (294)
                      +.++.+.++..|..  +..+++++ |+|.+|++++|+|+||+|||||+++|+|...++ .+.+...|..
T Consensus       128 ~~~~r~~v~~~l~t--Gi~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d-~~vi~~iGeR  192 (433)
T PRK07594        128 PAMVRQPITQPLMT--GIRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDAD-SNVLVLIGER  192 (433)
T ss_pred             CceeccCHhheeCC--Cceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCC-EEEEEEECCC
Confidence            35778888888853  25799999 999999999999999999999999999987776 5666655543

>PRK11823 DNA repair protein RadA; Provisional

Probab=98.43  E-value=3.5e-06  Score=80.97  Aligned_cols=59  Identities=17%  Similarity=0.234  Sum_probs=44.1

Q ss_pred             cCCCEEEeeCCCCCCC---------HHHHHHHHHHHHHHHHhcCcEEEEEeCCh--------hHHHhhhceEEEee
Q 022663          167 HPFKVLLLDEITVDLD---------VVARMDLLDFFKDECEQRGATIVYATHIF--------DGLETWATHLAYIQ  225 (294)
Q Consensus       167 ~~p~iLlLDEPt~gLD---------~~~~~~l~~~l~~~~~~~g~tviivsHd~--------~~~~~~~d~v~~l~  225 (294)
                      .+|+++++|+.++-..         ....+++...|.+++++.+.++|+++|--        ..+..++|.|+.++
T Consensus       155 ~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~~ak~~~itvilv~hvtk~~~~ag~~~lehlvD~Vi~le  230 (446)
T PRK11823        155 EKPDLVVIDSIQTMYSPELESAPGSVSQVRECAAELMRLAKQRGIAVFLVGHVTKEGAIAGPRVLEHMVDTVLYFE  230 (446)
T ss_pred             hCCCEEEEechhhhccccccCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeeccCCCCcCCcchhhhhCeEEEEEE
Confidence            5899999999875432         12334555667778888899999999942        24688899999887

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=98.42  E-value=3.4e-06  Score=66.83  Aligned_cols=56  Identities=20%  Similarity=0.099  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHH----hcCcEEEEEeCChh
Q 022663          156 RRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECE----QRGATIVYATHIFD  212 (294)
Q Consensus       156 kqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~----~~g~tviivsHd~~  212 (294)
                      .+......+...++.+|++||.-.. ++.....+.+.+.....    ..+.++|+++++..
T Consensus        72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~  131 (151)
T cd00009          72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL  131 (151)
T ss_pred             hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence            5556667777889999999997664 56666777777776542    24678999998764

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PRK13764 ATPase; Provisional

Probab=98.41  E-value=2.6e-06  Score=84.00  Aligned_cols=57  Identities=23%  Similarity=0.320  Sum_probs=44.7

Q ss_pred             HccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeC---------------ChhHHHhhhceEEEeeCCeE
Q 022663          165 LLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATH---------------IFDGLETWATHLAYIQDGEL  229 (294)
Q Consensus       165 L~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsH---------------d~~~~~~~~d~v~~l~~G~i  229 (294)
                      |..+|+++++||.-.   .++    ++++..+.. .|..++-+-|               ++..+..++|+|+++++|++
T Consensus       321 LR~rPD~IivGEiRd---~Et----~~~~~~l~~-ag~GvigTlHA~sa~~Ai~Rl~~~v~lg~i~~iID~IV~I~~G~I  392 (602)
T PRK13764        321 LLVRPDYTIYDEMRK---TED----FKIFADMRL-AGVGMVGVVHATRPIDAIQRFIGRVELGMIPQIVDTVIFIEDGEV  392 (602)
T ss_pred             HhhCCCEEEECCCCC---HHH----HHHHHHHHH-cCCeEEEEECCCCHHHHHHHHHhhhhhchHHHhhcEEEEEeCCEE
Confidence            778999999999974   333    333333332 3777899999               88899999999999999998

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=98.40  E-value=1.4e-06  Score=77.76  Aligned_cols=39  Identities=28%  Similarity=0.369  Sum_probs=32.8

Q ss_pred             CCceeeeeEEEeCCC-EEEEECCCCCcHHHHHHHHhCCcc
Q 022663           29 PPLFYDFNLGISPGS-RCLLVGANGSGKTTLLKILAGKHM   67 (294)
Q Consensus        29 ~~iL~~vsl~i~~Ge-~~~liG~NGsGKSTLlk~i~G~~~   67 (294)
                      +.+++.+++.++++. +++|+||||+|||||++.++..+.
T Consensus        29 ~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~   68 (269)
T TIGR03015        29 KRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLD   68 (269)
T ss_pred             HHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence            347788888887766 899999999999999999988554

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein

Probab=98.40  E-value=5.9e-07  Score=82.47  Aligned_cols=59  Identities=19%  Similarity=0.271  Sum_probs=46.2

Q ss_pred             cceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCC
Q 022663           17 CGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNR   79 (294)
Q Consensus        17 ~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~   79 (294)
                      ..++..|..  +..+++++ |.+.+|++++|+|+||+|||||+++|+|...++ .+.+...|.
T Consensus        47 ~~~~~~l~t--Gi~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~-~~vi~~iGe  105 (326)
T cd01136          47 RPIDEVLPT--GVRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTAD-VNVIALIGE  105 (326)
T ss_pred             ccceeEcCC--CcEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCC-EEEEEEEec
Confidence            334445543  25689999 999999999999999999999999999987765 555555443

This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.

>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family

Probab=98.39  E-value=3.5e-06  Score=73.44  Aligned_cols=57  Identities=18%  Similarity=0.279  Sum_probs=42.3

Q ss_pred             cCCCEEEeeCCCC------CCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC---------hhHHHhhhceEEEee
Q 022663          167 HPFKVLLLDEITV------DLDVVARMDLLDFFKDECEQRGATIVYATHI---------FDGLETWATHLAYIQ  225 (294)
Q Consensus       167 ~~p~iLlLDEPt~------gLD~~~~~~l~~~l~~~~~~~g~tviivsHd---------~~~~~~~~d~v~~l~  225 (294)
                      .+++++++| |.+      +.|...+..+.+++..+. +.+.|+++++|.         ...+..+||.|++|+
T Consensus       106 ~~~~~vVID-sls~l~~~~~~~~~~r~~l~~l~~~lk-~~~~tvll~s~~~~~~~~~~~~~~~~~l~D~vI~L~  177 (224)
T TIGR03880       106 LGASRVVID-PISLLETLFDDDAERRTELFRFYSSLR-ETGVTTILTSEADKTNVFASKYGLIEYLADGVIILK  177 (224)
T ss_pred             hCCCEEEEc-ChHHHhhhcCCHHHHHHHHHHHHHHHH-hCCCEEEEEEcccCCCCCccCCCceEEEEeEEEEEe
Confidence            368889999 544      344556677888887764 569999999995         244677899999985

This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.

>TIGR02903 spore_lon_C ATP-dependent protease, Lon family

Probab=98.36  E-value=1.9e-06  Score=85.89  Aligned_cols=44  Identities=25%  Similarity=0.343  Sum_probs=34.6

Q ss_pred             HHHHHcCCC--cccccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHH
Q 022663          135 RLIELLDID--LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKD  195 (294)
Q Consensus       135 ~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~  195 (294)
                      ..++..++.  ....+.++|||                +|+||| +..||+..+..+++.|.+
T Consensus       246 ~~l~~~gl~~~~~g~v~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll~~Le~  291 (615)
T TIGR02903       246 RDLAETGVPEPKTGLVTDAHGG----------------VLFIDE-IGELDPLLQNKLLKVLED  291 (615)
T ss_pred             HHHHHcCCCchhcCchhhcCCC----------------eEEEec-cccCCHHHHHHHHHHHhh
Confidence            345555653  34567789998                999999 799999999999998865

Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.

>PRK07196 fliI flagellum-specific ATP synthase; Validated

Probab=98.36  E-value=3e-07  Score=87.33  Aligned_cols=40  Identities=25%  Similarity=0.373  Sum_probs=36.8

Q ss_pred             CCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccC
Q 022663           29 PPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVG   69 (294)
Q Consensus        29 ~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~   69 (294)
                      ..+++++ |+|.+|++++|+|+||||||||+++|+|...++
T Consensus       143 i~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~d  182 (434)
T PRK07196        143 VNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQAD  182 (434)
T ss_pred             eeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCC
Confidence            4589999 999999999999999999999999999987654

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.33  E-value=6.5e-06  Score=75.64  Aligned_cols=40  Identities=33%  Similarity=0.281  Sum_probs=32.1

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCc
Q 022663           40 SPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRS   80 (294)
Q Consensus        40 ~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~   80 (294)
                      .+|++++|+|||||||||++..|++.+.+. ++.+.+.+.+
T Consensus       112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~-g~~V~Li~~D  151 (318)
T PRK10416        112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQ-GKKVLLAAGD  151 (318)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHhc-CCeEEEEecC
Confidence            579999999999999999999999977654 4555554443

>TIGR00235 udk uridine kinase

Probab=98.30  E-value=3.8e-07  Score=78.62  Aligned_cols=29  Identities=28%  Similarity=0.268  Sum_probs=26.3

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhCCccc
Q 022663           40 SPGSRCLLVGANGSGKTTLLKILAGKHMV   68 (294)
Q Consensus        40 ~~Ge~~~liG~NGsGKSTLlk~i~G~~~~   68 (294)
                      ++|++++|+||||||||||++.|+|++.+
T Consensus         4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~   32 (207)
T TIGR00235         4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK   32 (207)
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            57999999999999999999999997643

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PRK09183 transposase/IS protein; Provisional

Probab=98.29  E-value=2e-06  Score=76.85  Aligned_cols=50  Identities=20%  Similarity=0.334  Sum_probs=36.7

Q ss_pred             EEcceEEEcCCCCCC---CceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCC
Q 022663           15 KVCGMQFSYEGNDKP---PLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        15 ~~~~ls~~y~~~~~~---~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .+++..+.+....++   ..|.+++| +++|+.+.|+||+|+|||||..+|+..
T Consensus        73 ~l~~fd~~~~~~~~~~~i~~L~~~~~-i~~~~~v~l~Gp~GtGKThLa~al~~~  125 (259)
T PRK09183         73 TFEEYDFTFATGAPQKQLQSLRSLSF-IERNENIVLLGPSGVGKTHLAIALGYE  125 (259)
T ss_pred             cHhhcccccCCCCCHHHHHHHhcCCc-hhcCCeEEEEeCCCCCHHHHHHHHHHH
Confidence            345555555321111   24667888 999999999999999999999999663

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=98.28  E-value=4.8e-06  Score=78.77  Aligned_cols=55  Identities=16%  Similarity=0.238  Sum_probs=39.4

Q ss_pred             HHHHccCCCEEEeeC----------CCCCCCHHHHHHHHHHHHHHH---HhcCcEEEEEeCChhHHHh
Q 022663          162 CMGLLHPFKVLLLDE----------ITVDLDVVARMDLLDFFKDEC---EQRGATIVYATHIFDGLET  216 (294)
Q Consensus       162 AraL~~~p~iLlLDE----------Pt~gLD~~~~~~l~~~l~~~~---~~~g~tviivsHd~~~~~~  216 (294)
                      ..|....|.||++||          +.++.|...+..+.+++..+-   ...+..||++||+++.+..
T Consensus       232 ~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDp  299 (398)
T PTZ00454        232 RLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDP  299 (398)
T ss_pred             HHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCH
Confidence            344567899999999          456778777777777776542   1235679999998876543

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=98.27  E-value=5.5e-07  Score=75.81  Aligned_cols=28  Identities=29%  Similarity=0.475  Sum_probs=25.5

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCccc
Q 022663           41 PGSRCLLVGANGSGKTTLLKILAGKHMV   68 (294)
Q Consensus        41 ~Ge~~~liG~NGsGKSTLlk~i~G~~~~   68 (294)
                      +|++++|+|+||||||||+++|+|++.+
T Consensus         2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~   29 (176)
T PRK09825          2 AGESYILMGVSGSGKSLIGSKIAALFSA   29 (176)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhcCC
Confidence            6999999999999999999999997543

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=98.27  E-value=6.3e-07  Score=75.95  Aligned_cols=26  Identities=38%  Similarity=0.609  Sum_probs=24.0

Q ss_pred             CCEEEEECCCCCcHHHHHHHHhCCcc
Q 022663           42 GSRCLLVGANGSGKTTLLKILAGKHM   67 (294)
Q Consensus        42 Ge~~~liG~NGsGKSTLlk~i~G~~~   67 (294)
                      |++++|+||||||||||+++|++...
T Consensus         2 g~~i~l~G~sGsGKsTl~~~l~~~~~   27 (186)
T PRK10078          2 GKLIWLMGPSGSGKDSLLAALRQREQ   27 (186)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhccCC
Confidence            78999999999999999999999653

>PRK09862 putative ATP-dependent protease; Provisional

Probab=98.27  E-value=9e-07  Score=85.75  Aligned_cols=57  Identities=18%  Similarity=0.138  Sum_probs=48.9

Q ss_pred             EcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEe
Q 022663           16 VCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQV   76 (294)
Q Consensus        16 ~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~   76 (294)
                      +.|++..|+.   ..+++++++.+..|+.++|+||||||||||++.|.|++++. ++...+
T Consensus       187 ~~d~~~v~Gq---~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~-~g~e~l  243 (506)
T PRK09862        187 QHDLSDVIGQ---EQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDL-SNEEAL  243 (506)
T ss_pred             ccCeEEEECc---HHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCC-CCcEEE
Confidence            4588888875   46899999999999999999999999999999999998775 554443

>PRK09099 type III secretion system ATPase; Provisional

Probab=98.24  E-value=1.4e-06  Score=82.99  Aligned_cols=50  Identities=18%  Similarity=0.361  Sum_probs=43.3

Q ss_pred             CCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCc
Q 022663           29 PPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRS   80 (294)
Q Consensus        29 ~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~   80 (294)
                      ..+++++ |.+.+|++++|+|+||+|||||+++|+|...++ .+.+...|..
T Consensus       151 i~~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d-~~vi~~iGer  200 (441)
T PRK09099        151 VRIVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQCD-VNVIALIGER  200 (441)
T ss_pred             ceeccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCCCCC-eEEEEEEccC
Confidence            4689999 999999999999999999999999999987765 5666666643

>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=98.24  E-value=2e-05  Score=68.58  Aligned_cols=28  Identities=43%  Similarity=0.502  Sum_probs=25.3

Q ss_pred             EEeCCCEEEEECCCCCcHHHHHHHHhCC
Q 022663           38 GISPGSRCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        38 ~i~~Ge~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      -+++|+++.|.||+|+|||||+..++..
T Consensus        15 G~~~g~v~~I~G~~GsGKT~l~~~ia~~   42 (226)
T cd01393          15 GIPTGRITEIFGEFGSGKTQLCLQLAVE   42 (226)
T ss_pred             CCcCCcEEEEeCCCCCChhHHHHHHHHH
Confidence            4789999999999999999999988764

RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	294
3dhw_C	343	Crystal Structure Of Methionine Importer Metni Leng		8e-10
4ayw_A	619	Structure Of The Human Mitochondrial Abc Transporte		2e-09
3tui_C	366	Inward Facing Conformations Of The Metni Methionine		2e-09
4ayt_A	595	Structure Of The Human Mitochondrial Abc Transporte		2e-09
3tuj_C	366	Inward Facing Conformations Of The Metni Methionine		3e-09
1l2t_A	235	Dimeric Structure Of Mj0796, A Bacterial Abc Transp		6e-09
3tif_A	235	Dimeric Structure Of A Post-Hydrolysis State Of The		7e-09
1f3o_A	235	Crystal Structure Of Mj0796 Atp-Binding Cassette Le		2e-08
3b5x_A	582	Crystal Structure Of Msba From Vibrio Cholerae Leng		3e-08
2it1_A	362	Structure Of Ph0203 Protein From Pyrococcus Horikos		7e-08
1q1b_A	381	Crystal Structure Of E. Coli Malk In The Nucleotide		5e-07
1q12_A	381	Crystal Structure Of The Atp-bound E. Coli Malk Len		6e-07
1vpl_A	256	Crystal Structure Of Abc Transporter Atp-binding Pr		6e-07
4f4c_A	1321	The Crystal Structure Of The Multi-Drug Transporter		8e-07
2yz2_A	266	Crystal Structure Of The Abc Transporter In The Cob		1e-06
4hlu_A	268	Structure Of The Ecfa-a' Heterodimer Bound To Adp L		1e-06
2r6g_A	381	The Crystal Structure Of The E. Coli Maltose Transp		1e-06
2ixf_A	271	Crystal Structure Of The Atpase Domain Of Tap1 With		1e-06
3qf4_B	598	Crystal Structure Of A Heterodimeric Abc Transporte		2e-06
2ghi_A	260	Crystal Structure Of Plasmodium Yoelii Multidrug Re		3e-06
2iwh_A	986	Structure Of Yeast Elongation Factor 3 In Complex W		3e-06
4hlu_D	268	Structure Of The Ecfa-a' Heterodimer Bound To Adp L		4e-06
2yyz_A	359	Crystal Structure Of Sugar Abc Transporter, Atp-Bin		4e-06
1xef_A	241	Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI		9e-06
2ffa_A	247	Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr		9e-06
2pmk_A	243	Crystal Structures Of An Isolated Abc-Atpase In Com		1e-05
1mt0_A	241	Atp-Binding Domain Of Haemolysin B From Escherichia		1e-05
2ff7_A	247	The Abc-Atpase Of The Abc-Transporter Hlyb In The A		1e-05
2ixe_A	271	Crystal Structure Of The Atpase Domain Of Tap1 With		2e-05
3b5j_A	243	Crystal Structures Of The S504a Mutant Of An Isolat		2e-05
2nq2_C	253	An Inward-Facing Conformation Of A Putative Metal-C		2e-05
3g60_A	1284	Structure Of P-Glycoprotein Reveals A Molecular Bas		2e-05
3g5u_A	1284	Structure Of P-Glycoprotein Reveals A Molecular Bas		2e-05
2ffb_A	247	The Crystal Structure Of The Hlyb-Nbd E631q Mutant		3e-05
3gfo_A	275	Structure Of Cbio1 From Clostridium Perfringens: Pa		3e-05
1mv5_A	243	Crystal Structure Of Lmra Atp-Binding Domain Length		3e-05
3b5w_A	582	Crystal Structure Of Eschericia Coli Msba Length =		4e-05
2ix8_A	976	Model For Eef3 Bound To An 80s Ribosome Length = 97		4e-05
2iw3_A	986	Elongation Factor 3 In Complex With Adp Length = 98		4e-05
1jj7_A	260	Crystal Structure Of The C-Terminal Atpase Domain O		6e-05
3j16_B	608	Models Of Ribosome-Bound Dom34p And Rli1p And Their		6e-05
2ixg_A	271	Crystal Structure Of The Atpase Domain Of Tap1 With		7e-05
1sgw_A	214	Putative Abc Transporter (Atp-Binding Protein) From		8e-05
1z47_A	355	Structure Of The Atpase Subunit Cysa Of The Putativ		9e-05
2hyd_A	578	Multidrug Abc Transporter Sav1866 Length = 578		1e-04
1v43_A	372	Crystal Structure Of Atpase Subunit Of Abc Sugar Tr		1e-04
1vci_A	373	Crystal Structure Of The Atp-binding Cassette Of Mu		1e-04
3b5y_A	582	Crystal Structure Of Msba From Salmonella Typhimuri		1e-04
3nh6_A	306	Nucleotide Binding Domain Of Human Abcb6 (Apo Struc		2e-04
1oxs_C	353	Crystal Structure Of Glcv, The Abc-Atpase Of The Gl		2e-04
2pjz_A	263	The Crystal Structure Of Putative Cobalt Transport		6e-04
4fwi_B	334	Crystal Structure Of The Nucleotide-binding Domain		6e-04
1oxx_K	353	Crystal Structure Of Glcv, The Abc-Atpase Of The Gl		8e-04
2d62_A	375	Crystal Structure Of Multiple Sugar Binding Transpo		9e-04

>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343

Iteration: 1
 Score = 60.8 bits (146), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 103/228 (45%), Gaps = 23/228 (10%)
Query: 23  YEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKIL-------AGKHMVGGRDVVQ 75
           ++G        + +L +  G    ++GA+G+GK+TL++ +        G  +V G+++  
Sbjct: 12  HQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELT- 70
Query: 76  VLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRER 135
            L+ S     +        +     S+TV     +PL+ D + +         D V+R R
Sbjct: 71  TLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPK---------DEVKR-R 120
Query: 136 LIELLDIDLQWRMH-----KVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLL 190
           + ELL +      H      +S GQ++RV I   L    KVLL DE T  LD      +L
Sbjct: 121 VTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSIL 180
Query: 191 DFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL 238
           +  KD   + G TI+  TH  D ++     +A I +GEL   + ++E+
Sbjct: 181 ELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEV 228

>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/196 (26%), Positives = 91/196 (46%), Gaps = 31/196 (15%)
Query: 5   MNENEKLNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAG 64
           +NE     +++   + F+Y    + P+F DF+L I  GS   LVG +GSGK+T+L +L  
Sbjct: 364 LNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLL-- 421
Query: 65  KHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKT-VGSAGEIPLQGDFS-AEHMI 122
                    +++ + +S   T  +   D+  L   W ++ +G+  + P+    S AE++ 
Sbjct: 422 ---------LRLYDPAS--GTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIA 470
Query: 123 FGVEGSDPVRRERLIELLDIDLQWRMHK----------------VSDGQRRRVQICMGLL 166
           +G +    V  E +  + ++       +                +S GQ++R+ I   LL
Sbjct: 471 YGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALL 530
Query: 167 HPFKVLLLDEITVDLD 182
              K+LLLDE T  LD
Sbjct: 531 KNPKILLLDEATSALD 546

>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 103/228 (45%), Gaps = 23/228 (10%)
Query: 23  YEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKIL-------AGKHMVGGRDVVQ 75
           ++G        + +L +  G    ++GA+G+GK+TL++ +        G  +V G+++  
Sbjct: 35  HQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELT- 93
Query: 76  VLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRER 135
            L+ S     +        +     S+TV     +PL+ D + +         D V+R R
Sbjct: 94  TLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPK---------DEVKR-R 143
Query: 136 LIELLDIDLQWRMH-----KVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLL 190
           + ELL +      H      +S GQ++RV I   L    KVLL D+ T  LD      +L
Sbjct: 144 VTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSIL 203
Query: 191 DFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL 238
           +  KD   + G TI+  TH  D ++     +A I +GEL   + ++E+
Sbjct: 204 ELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEV 251

>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 88/203 (43%), Gaps = 45/203 (22%)
Query: 5   MNENEKLNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKIL-- 62
           +NE     +++   + F+Y    + P+F DF+L I  GS   LVG +GSGK+T+L +L  
Sbjct: 333 LNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLR 392
Query: 63  -----AGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKT-VGSAGEIPLQGDF 116
                +G   + G D+ Q                    L   W ++ +G+  + P+    
Sbjct: 393 LYDPASGTISLDGHDIRQ--------------------LNPVWLRSKIGTVSQEPILFSC 432
Query: 117 S-AEHMIFGVEGSDPVRRERLIELLDIDLQWRMHK----------------VSDGQRRRV 159
           S AE++ +G +    V  E +  + ++       +                +S GQ++R+
Sbjct: 433 SIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRI 492
Query: 160 QICMGLLHPFKVLLLDEITVDLD 182
            I   LL   K+LLLDE T  LD
Sbjct: 493 AIARALLKNPKILLLDEATSALD 515

>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366

Iteration: 1
 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 103/228 (45%), Gaps = 23/228 (10%)
Query: 23  YEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKIL-------AGKHMVGGRDVVQ 75
           ++G        + +L +  G    ++GA+G+GK+TL++ +        G  +V G+++  
Sbjct: 35  HQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELT- 93
Query: 76  VLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRER 135
            L+ S     +        +     S+TV     +PL+ D + +         D V+R R
Sbjct: 94  TLSESELTKARRQIGXIFQHFNLLSSRTVFGNVALPLELDNTPK---------DEVKR-R 143
Query: 136 LIELLDIDLQWRMH-----KVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLL 190
           + ELL +      H      +S GQ++RV I   L    KVLL D+ T  LD      +L
Sbjct: 144 VTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSIL 203
Query: 191 DFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL 238
           +  KD   + G TI+  TH  D ++     +A I +GEL   + ++E+
Sbjct: 204 ELLKDINRRLGLTILLITHEXDVVKRICDCVAVISNGELIEQDTVSEV 251

>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235

Iteration: 1
 Score = 58.2 bits (139), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 102/222 (45%), Gaps = 25/222 (11%)
Query: 34  DFNLGISPGSRCLLVGANGSGKTTLLKILAG-KHMVGGRDVVQVLNRSSFHDTQL--VCS 90
           + NL I  G    ++G +GSGK+T+L I+        G   +  +  +   D +L  +  
Sbjct: 23  NVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRR 82
Query: 91  GDLSYLGGSWSK----TVGSAGEIPLQGDFSAEHMIFGVEG--SDPVRRERLIELLDI-D 143
             + ++   ++     T     E+PL         IF   G  S   RR+R +E L + +
Sbjct: 83  DKIGFVFQQFNLIPLLTALENVELPL---------IFKYRGAMSGEERRKRALECLKMAE 133
Query: 144 LQWRM-----HKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECE 198
           L+ R      +++S GQ++RV I   L +   ++L D+ T  LD      ++   K   E
Sbjct: 134 LEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNE 193
Query: 199 QRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDE 240
           + G T+V  TH  + +  +   + Y++DGE+ R EKL   D+
Sbjct: 194 EDGKTVVVVTHDIN-VARFGERIIYLKDGEVEREEKLRGFDD 234

>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235

Iteration: 1
 Score = 57.8 bits (138), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 102/222 (45%), Gaps = 25/222 (11%)
Query: 34  DFNLGISPGSRCLLVGANGSGKTTLLKILAG-KHMVGGRDVVQVLNRSSFHDTQL--VCS 90
           + NL I  G    ++G +GSGK+T+L I+        G   +  +  +   D +L  +  
Sbjct: 23  NVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRR 82
Query: 91  GDLSYLGGSWSK----TVGSAGEIPLQGDFSAEHMIFGVEG--SDPVRRERLIELLDI-D 143
             + ++   ++     T     E+PL         IF   G  S   RR+R +E L + +
Sbjct: 83  DKIGFVFQQFNLIPLLTALENVELPL---------IFKYRGAMSGEERRKRALECLKMAE 133
Query: 144 LQWRM-----HKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECE 198
           L+ R      +++S GQ++RV I   L +   ++L D+ T  LD      ++   K   E
Sbjct: 134 LEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNE 193
Query: 199 QRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDE 240
           + G T+V  TH  + +  +   + Y++DGE+ R EKL   D+
Sbjct: 194 EDGKTVVVVTHDIN-VARFGERIIYLKDGEVEREEKLRGFDD 234

>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 99/222 (44%), Gaps = 25/222 (11%)
Query: 34  DFNLGISPGSRCLLVGANGSGKTTLLKILAG-KHMVGGRDVVQVLNRSSFHDTQL--VCS 90
           + NL I  G    + G +GSGK+T L I+        G   +  +  +   D +L  +  
Sbjct: 23  NVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRR 82
Query: 91  GDLSYLGGSWSK----TVGSAGEIPLQGDFSAEHMIFGVEG--SDPVRRERLIELL---D 141
             + ++   ++     T     E+PL         IF   G  S   RR+R +E L   +
Sbjct: 83  DKIGFVFQQFNLIPLLTALENVELPL---------IFKYRGAXSGEERRKRALECLKXAE 133
Query: 142 IDLQWRMHK---VSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECE 198
           ++ ++  HK   +S GQ++RV I   L +   ++L DE T  LD      +    K   E
Sbjct: 134 LEERFANHKPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLNE 193
Query: 199 QRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDE 240
           + G T+V  TH  + +  +   + Y++DGE+ R EKL   D+
Sbjct: 194 EDGKTVVVVTHDIN-VARFGERIIYLKDGEVEREEKLRGFDD 234

>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 114/251 (45%), Gaps = 28/251 (11%)
Query: 3   DGMNENEKLN-SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKI 61
           +G  E E++N  + V  + F+Y+G +KP L +  +  I  G    LVG +GSGK+T+  +
Sbjct: 330 NGKYEAERVNGEVDVKDVTFTYQGKEKPALSH-VSFSIPQGKTVALVGRSGSGKSTIANL 388
Query: 62  L-------AGKHMVGGRDV--VQVLN-RSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIP 111
                   +G   + G DV   ++ N R  F     + S ++     + +  +  A E  
Sbjct: 389 FTRFYDVDSGSICLDGHDVRDYKLTNLRRHFA----LVSQNVHLFNDTIANNIAYAAE-- 442
Query: 112 LQGDFSAEHMIFGVEGSDPVRR-ERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFK 170
             G+++ E +      +  +   E + + LD  +      +S GQR+RV I   LL    
Sbjct: 443 --GEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAP 500
Query: 171 VLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL- 229
           VL+LDE T  LD  +   +     DE  Q+  T++   H    +E  A  +  + +GE+ 
Sbjct: 501 VLILDEATSALDTESERAIQAAL-DEL-QKNKTVLVIAHRLSTIEQ-ADEILVVDEGEII 557
Query: 230 ---RRAEKLAE 237
              R A+ LA+
Sbjct: 558 ERGRHADLLAQ 568

>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362

Iteration: 1
 Score = 54.7 bits (130), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 94/205 (45%), Gaps = 22/205 (10%)
Query: 34  DFNLGISPGSRCLLVGANGSGKTTLLKILAG-------KHMVGGRDVVQVLNRSSFHDTQ 86
           + NL I  G    L+G +GSGK+TLL  +AG       K     +DV ++  +    +  
Sbjct: 21  NINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKD--RNVG 78
Query: 87  LVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDID--L 144
           LV      Y   +  K +      PL+   +    I      D   RE + ++L ID  L
Sbjct: 79  LVFQNWALYPHMTVYKNIA----FPLELRKAPREEI------DKKVRE-VAKMLHIDKLL 127
Query: 145 QWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATI 204
                ++S GQ++RV I   L+   +VLLLDE   +LD + R+++    K   ++ G T 
Sbjct: 128 NRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITT 187
Query: 205 VYATHIFDGLETWATHLAYIQDGEL 229
           VY TH        A  +A I++GE+
Sbjct: 188 VYVTHDQAEALAMADRIAVIREGEI 212

>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381

Iteration: 1
 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 98/216 (45%), Gaps = 26/216 (12%)
Query: 34  DFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL 93
           D NL I  G   + VG +G GK+TLL+++AG   +   D+   +     +DT     G +
Sbjct: 21  DINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF--IGEKRMNDTPPAERG-V 77
Query: 94  SYLGGSWSKTVGSAGEIPLQGDFS-AEHMIFGVEGSDP------VRRERLIELLDID--L 144
             +  S++          L    S AE+M FG++ +         R  ++ E+L +   L
Sbjct: 78  GMVFQSYA----------LYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLL 127
Query: 145 QWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATI 204
             +   +S GQR+RV I   L+    V LLDE   +LD   R+ +        ++ G T+
Sbjct: 128 DRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTM 187
Query: 205 VYATHIFDGLE--TWATHLAYIQDGELRRAEKLAEL 238
           +Y TH  D +E  T A  +  +  G + +  K  EL
Sbjct: 188 IYVTH--DQVEAMTLADKIVVLDAGRVAQVGKPLEL 221

>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381

Iteration: 1
 Score = 51.6 bits (122), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 98/216 (45%), Gaps = 26/216 (12%)
Query: 34  DFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL 93
           D NL I  G   + VG +G GK+TLL+++AG   +   D+   +     +DT     G +
Sbjct: 21  DINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF--IGEKRMNDTPPAERG-V 77
Query: 94  SYLGGSWSKTVGSAGEIPLQGDFS-AEHMIFGVEGSDP------VRRERLIELLDID--L 144
             +  S++          L    S AE+M FG++ +         R  ++ E+L +   L
Sbjct: 78  GMVFQSYA----------LYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLL 127
Query: 145 QWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATI 204
             +   +S GQR+RV I   L+    V LLDE   +LD   R+ +        ++ G T+
Sbjct: 128 DRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTM 187
Query: 205 VYATHIFDGLE--TWATHLAYIQDGELRRAEKLAEL 238
           +Y TH  D +E  T A  +  +  G + +  K  EL
Sbjct: 188 IYVTH--DQVEAMTLADKIVVLDAGRVAQVGKPLEL 221

>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256

Iteration: 1
 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 105/239 (43%), Gaps = 24/239 (10%)
Query: 28  KPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKIL-------AGKHMVGGRDVVQVLNRS 80
           K  +    +  I  G    L+G NG+GKTT L+I+       +G   V G++VV+     
Sbjct: 27  KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE----- 81
Query: 81  SFHDTQLVCSGDLSYL---GGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLI 137
             H+ + +    +SYL    G++    G      + G +++       E  + V R   I
Sbjct: 82  EPHEVRKL----ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSS----EIEEMVERATEI 133
Query: 138 ELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDEC 197
             L   ++ R+   S G  R++ I   L+   ++ +LDE T  LDV+   ++    K + 
Sbjct: 134 AGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILK-QA 192
Query: 198 EQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDELRNSTNLLSVVESWLR 256
            Q G TI+ ++H    +E     +A I +G +     + EL E   + N+  V E  ++
Sbjct: 193 SQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQNIEEVFEEVVK 251

>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321

Iteration: 1
 Score = 50.8 bits (120), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 80/180 (44%), Gaps = 20/180 (11%)
Query: 14  IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLK-------ILAGKH 66
           I V  + F+Y      P+    NL ++ G    LVG++G GK+T++        +L GK 
Sbjct: 416 ITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKI 475
Query: 67  MVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVE 126
            + G DV  + N         V S + +    +  + +    E       + E M+   +
Sbjct: 476 TIDGVDVRDI-NLEFLRKNVAVVSQEPALFNCTIEENISLGKE-----GITREEMVAACK 529
Query: 127 GSDPVRRERLIELL----DIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLD 182
            ++    E+ I+ L    +  +  R  ++S GQ++R+ I   L+   K+LLLDE T  LD
Sbjct: 530 MANA---EKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALD 586

>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 90/201 (44%), Gaps = 33/201 (16%)
Query: 34  DFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL 93
           + +L I+ G   L+ G  GSGK+TLL+I+AG       DV+    R              
Sbjct: 25  NVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKK------------ 72
Query: 94  SYLGGSWSKTVGSAGEIPLQGDFSAEHMI----FGVEGSDPVRR-----ERLIELLDIDL 144
              G    + +G A + P +  F AE +     F V+   P R      ++ +E + +D 
Sbjct: 73  ---GYEIRRNIGIAFQYP-EDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDF 128
Query: 145 QWRMHKV----SDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQR 200
                +V    S G++RRV I   ++H   +L+LDE  V LD   + DLL    ++ +  
Sbjct: 129 DSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIV-EKWKTL 187
Query: 201 GATIVYATHIFDGLETWATHL 221
           G T++  +H    +ET   H+
Sbjct: 188 GKTVILISH---DIETVINHV 205

>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 86/191 (45%), Gaps = 34/191 (17%)
Query: 45  CLLVGAN-GSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKT 103
           CLLV  N GSGK+TLL+I+AG       DV+    R                 G    + 
Sbjct: 37  CLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKK---------------GYEIRRN 81
Query: 104 VGSAGEIPLQGDFSAEHMI----FGVEGSDPVRR-----ERLIELLDIDLQWRMHKV--- 151
           +G A + P +  F AE +     F V+   P R      ++ +E + +D      +V   
Sbjct: 82  IGIAFQYP-EDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFF 140
Query: 152 -SDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHI 210
            S G++RRV I   ++H   +L+LDE  V LD   + DLL    ++ +  G T++  +H 
Sbjct: 141 LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIV-EKWKTLGKTVILISH- 198
Query: 211 FDGLETWATHL 221
              +ET   H+
Sbjct: 199 --DIETVINHV 207

>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 98/216 (45%), Gaps = 26/216 (12%)
Query: 34  DFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL 93
           D NL I  G   + VG +G GK+TLL+++AG   +   D+   +     +DT     G +
Sbjct: 21  DINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF--IGEKRMNDTPPAERG-V 77
Query: 94  SYLGGSWSKTVGSAGEIPLQGDFS-AEHMIFGVEGSDP------VRRERLIELLDID--L 144
             +  S++          L    S AE+M FG++ +         R  ++ E+L +   L
Sbjct: 78  GMVFQSYA----------LYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLL 127
Query: 145 QWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATI 204
             +   +S GQR+RV I   L+    V LLD+   +LD   R+ +        ++ G T+
Sbjct: 128 DRKPKALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLGRTM 187
Query: 205 VYATHIFDGLE--TWATHLAYIQDGELRRAEKLAEL 238
           +Y TH  D +E  T A  +  +  G + +  K  EL
Sbjct: 188 IYVTH--DQVEAMTLADKIVVLDAGRVAQVGKPLEL 221

>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/225 (23%), Positives = 98/225 (43%), Gaps = 16/225 (7%)
Query: 14  IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKIL-------AGKH 66
           +K   + F+Y  +    +       + PG    LVG NGSGK+T+  +L        GK 
Sbjct: 17  VKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKV 76
Query: 67  MVGGRDVVQVLNRSSFHDTQLVCSGDLSYL-GGSWSKTVGSA-GEIPLQGDFSAEHMIFG 124
           ++ G  +VQ  +   +  TQ+   G    L G S+ + +       P   + +A  M  G
Sbjct: 77  LLDGEPLVQYDHH--YLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESG 134
Query: 125 VEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVV 184
               D +      +  D ++    +++S GQR+ V +   L+   ++L+LD+ T  LD  
Sbjct: 135 AH--DFI--SGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAG 190
Query: 185 ARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL 229
            ++ +     +  E    T++  TH    L   A H+ ++++G +
Sbjct: 191 NQLRVQRLLYESPEWASRTVLLITHQLS-LAERAHHILFLKEGSV 234

>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 67/259 (25%), Positives = 108/259 (41%), Gaps = 41/259 (15%)
Query: 3   DGMNENEKLNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKIL 62
           D +   E    I+   + FSY+   K P+  D    I PG +  LVG  GSGKTT++ +L
Sbjct: 344 DAVELREVRGEIEFKNVWFSYD--KKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLL 401
Query: 63  A-------GKHMVGGRDVVQVLNRSS--------FHDTQLVCSG---DLSYLG-GSWSKT 103
                   G+ +V G D+ ++  RSS          DT L  +    +L Y   G+  + 
Sbjct: 402 MRFYDVDRGQILVDGIDIRKI-KRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEE 460
Query: 104 VGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICM 163
           +  A ++    D   +H+    EG + V            L      +S GQR+ + I  
Sbjct: 461 IKEAAKLT-HSDHFIKHL---PEGYETV------------LTDNGEDLSQGQRQLLAITR 504
Query: 164 GLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAY 223
             L   K+L+LDE T ++D      +        E  G T +   H  + ++  A  +  
Sbjct: 505 AFLANPKILILDEATSNVDTKTEKSIQAAMWKLME--GKTSIIIAHRLNTIKN-ADLIIV 561
Query: 224 IQDGELRRAEKLAELDELR 242
           ++DGE+    K  EL + R
Sbjct: 562 LRDGEIVEMGKHDELIQKR 580

>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 77/182 (42%), Gaps = 23/182 (12%)
Query: 13  SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKIL------AGKH 66
           +I+   + FSY            N  I  G+ C LVG  GSGK+T+ K+L       G  
Sbjct: 17  NIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDI 76
Query: 67  MVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSA--EHMIFG 124
            +GG++V +  NR+S      +   D      +    +       L G   A  E +I  
Sbjct: 77  KIGGKNVNK-YNRNSIRSIIGIVPQDTILFNETIKYNI-------LYGKLDATDEEVI-- 126
Query: 125 VEGSDPVRRERLIELL----DIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVD 180
            + +   +    IE L    D  +  +  K+S G+R+R+ I   LL   K+++ DE T  
Sbjct: 127 -KATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSS 185
Query: 181 LD 182
           LD
Sbjct: 186 LD 187

>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp Length = 986

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 14  IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGK 65
           +KV  M+F Y G  KP +  D N   S  SR  ++G NG+GK+TL+ +L G+
Sbjct: 672 VKVTNMEFQYPGTSKPQI-TDINFQCSLSSRIAVIGPNGAGKSTLINVLTGE 722

>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 56/205 (27%), Positives = 94/205 (45%), Gaps = 15/205 (7%)
Query: 14  IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDV 73
           I++  + F Y G+    +  D N     G   ++VG NGSGKTTLLKILAG     G   
Sbjct: 12  IELNSVSFRYNGD---YVLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLLAAAG--- 65
Query: 74  VQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRR 133
            ++    S  D  L+            S+ +G+  E  +   FS E  I G++ S+  +R
Sbjct: 66  -EIFLDGSPADPFLLRKNVGYVFQNPSSQIIGATVEEDVA--FSLE--IMGLDESEMRKR 120
Query: 134 -ERLIELLDID--LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLL 190
            ++++EL+ +          +S GQ++R+ I   L    + L LDE    LD  ++ ++ 
Sbjct: 121 IKKVLELVGLSGLAAADPLNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIF 180
Query: 191 DFFKDECEQRGATIVYATHIFDGLE 215
               +  +  G  I+  TH  + L+
Sbjct: 181 QVL-ESLKNEGKGIILVTHELEYLD 204

>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 56/202 (27%), Positives = 84/202 (41%), Gaps = 32/202 (15%)
Query: 42  GSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWS 101
           G    L+G +G GKTT L +LAG +     ++        + D  LV      Y      
Sbjct: 29  GEFVALLGPSGCGKTTTLLMLAGIYKPTSGEI--------YFDDVLVNDIPPKY------ 74
Query: 102 KTVGSAGEIPLQGDFSAEHMIFGVEGSDPVR---------RERLIE-----LLDIDLQWR 147
           + VG       Q      HM      + P+R          +R++E     L+D  L  +
Sbjct: 75  REVGMV----FQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRK 130
Query: 148 MHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYA 207
             ++S GQ++RV +   L+   KVLL DE   +LD   RM +    K   ++ G T VY 
Sbjct: 131 PTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYV 190
Query: 208 THIFDGLETWATHLAYIQDGEL 229
           TH      T A+ +A    G+L
Sbjct: 191 THDQAEAMTMASRIAVFNQGKL 212

>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241

Iteration: 1
 Score = 47.4 bits (111), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 51/213 (23%), Positives = 90/213 (42%), Gaps = 47/213 (22%)
Query: 19  MQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILA-------GKHMVGGR 71
           ++F Y+  D P +  + NL I  G    +VG +GSGK+TL K++        G+ ++ G 
Sbjct: 7   IRFRYKP-DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGH 65
Query: 72  DVV------------QVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAE 119
           D+              VL  +   +  ++ +  L+  G S  K +  A ++    DF +E
Sbjct: 66  DLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVI-YAAKLAGAHDFISE 124
Query: 120 -----HMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLL 174
                + I G +G+                      +S GQR+R+ I   L++  K+L+ 
Sbjct: 125 LREGYNTIVGEQGAG---------------------LSGGQRQRIAIARALVNNPKILIF 163
Query: 175 DEITVDLDVVARMDLLDFFKDECEQRGATIVYA 207
           DE T  LD  +   ++      C+ R   I+ A
Sbjct: 164 DEATSALDYESEHVIMRNMHKICKGRTVIIIAA 196

>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247

Iteration: 1
 Score = 47.4 bits (111), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 51/213 (23%), Positives = 90/213 (42%), Gaps = 47/213 (22%)
Query: 19  MQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILA-------GKHMVGGR 71
           ++F Y+  D P +  + NL I  G    +VG +GSGK+TL K++        G+ ++ G 
Sbjct: 13  IRFRYKP-DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGH 71
Query: 72  DVV------------QVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAE 119
           D+              VL  +   +  ++ +  L+  G S  K +  A ++    DF +E
Sbjct: 72  DLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVI-YAAKLAGAHDFISE 130
Query: 120 -----HMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLL 174
                + I G +G+                      +S GQR+R+ I   L++  K+L+ 
Sbjct: 131 LREGYNTIVGEQGAG---------------------LSGGQRQRIAIARALVNNPKILIF 169
Query: 175 DEITVDLDVVARMDLLDFFKDECEQRGATIVYA 207
           DE T  LD  +   ++      C+ R   I+ A
Sbjct: 170 DEATSALDYESEHVIMRNMHKICKGRTVIIIAA 202

>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/244 (22%), Positives = 103/244 (42%), Gaps = 50/244 (20%)
Query: 19  MQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILA-------GKHMVGGR 71
           ++F Y+  D P +  + NL I  G    +VG +GSGK+TL K++        G+ ++ G 
Sbjct: 9   IRFRYKP-DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGH 67
Query: 72  DVV------------QVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAE 119
           D+              VL  +   +  ++ +  L+  G S  K +  A ++    DF +E
Sbjct: 68  DLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVI-YAAKLAGAHDFISE 126
Query: 120 -----HMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLL 174
                + I G +G+                      +S GQR+R+ I   L++  K+L+ 
Sbjct: 127 LREGYNTIVGEQGAG---------------------LSGGQRQRIAIARALVNNPKILIF 165
Query: 175 DEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEK 234
           DE T  LD  +   ++      C  +G T++   H    ++  A  +  ++ G++    K
Sbjct: 166 DEATSALDYESEHVIMRNMHKIC--KGRTVIIIAHRLSTVKN-ADRIIVMEKGKIVEQGK 222
Query: 235 LAEL 238
             EL
Sbjct: 223 HKEL 226

>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/244 (22%), Positives = 103/244 (42%), Gaps = 50/244 (20%)
Query: 19  MQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILA-------GKHMVGGR 71
           ++F Y+  D P +  + NL I  G    +VG +GSGK+TL K++        G+ ++ G 
Sbjct: 7   IRFRYKP-DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGH 65
Query: 72  DVV------------QVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAE 119
           D+              VL  +   +  ++ +  L+  G S  K +  A ++    DF +E
Sbjct: 66  DLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVI-YAAKLAGAHDFISE 124
Query: 120 -----HMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLL 174
                + I G +G+                      +S GQR+R+ I   L++  K+L+ 
Sbjct: 125 LREGYNTIVGEQGAG---------------------LSGGQRQRIAIARALVNNPKILIF 163
Query: 175 DEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEK 234
           DE T  LD  +   ++      C  +G T++   H    ++  A  +  ++ G++    K
Sbjct: 164 DEATSALDYESEHVIMRNMHKIC--KGRTVIIIAHRLSTVKN-ADRIIVMEKGKIVEQGK 220
Query: 235 LAEL 238
             EL
Sbjct: 221 HKEL 224

>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/244 (22%), Positives = 103/244 (42%), Gaps = 50/244 (20%)
Query: 19  MQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILA-------GKHMVGGR 71
           ++F Y+  D P +  + NL I  G    +VG +GSGK+TL K++        G+ ++ G 
Sbjct: 13  IRFRYKP-DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGH 71
Query: 72  DVV------------QVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAE 119
           D+              VL  +   +  ++ +  L+  G S  K +  A ++    DF +E
Sbjct: 72  DLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVI-YAAKLAGAHDFISE 130
Query: 120 -----HMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLL 174
                + I G +G+                      +S GQR+R+ I   L++  K+L+ 
Sbjct: 131 LREGYNTIVGEQGAG---------------------LSGGQRQRIAIARALVNNPKILIF 169
Query: 175 DEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEK 234
           DE T  LD  +   ++      C  +G T++   H    ++  A  +  ++ G++    K
Sbjct: 170 DEATSALDYESEHVIMRNMHKIC--KGRTVIIIAHRLSTVKN-ADRIIVMEKGKIVEQGK 226
Query: 235 LAEL 238
             EL
Sbjct: 227 HKEL 230

>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/225 (22%), Positives = 96/225 (42%), Gaps = 16/225 (7%)
Query: 14  IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKIL-------AGKH 66
           +K   + F+Y  +    +       + PG    LVG NGSGK+T+  +L        GK 
Sbjct: 17  VKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKV 76
Query: 67  MVGGRDVVQVLNRSSFHDTQLVCSGDLSYL-GGSWSKTVGSA-GEIPLQGDFSAEHMIFG 124
           ++ G  +VQ  +   +  TQ+   G    L G S+ + +       P   + +A  M  G
Sbjct: 77  LLDGEPLVQYDHH--YLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESG 134
Query: 125 VEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVV 184
               D +      +  D ++    +++S GQR+ V +   L+   ++L+LD  T  LD  
Sbjct: 135 AH--DFI--SGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAG 190
Query: 185 ARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL 229
            ++ +     +  E    T++  T     L   A H+ ++++G +
Sbjct: 191 NQLRVQRLLYESPEWASRTVLLITQQLS-LAERAHHILFLKEGSV 234

>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/244 (22%), Positives = 102/244 (41%), Gaps = 50/244 (20%)
Query: 19  MQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILA-------GKHMVGGR 71
           ++F Y+  D P +  + NL I  G    +VG  GSGK+TL K++        G+ ++ G 
Sbjct: 9   IRFRYKP-DSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQVLIDGH 67
Query: 72  DVV------------QVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAE 119
           D+              VL  +   +  ++ +  L+  G S  K +  A ++    DF +E
Sbjct: 68  DLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVI-YAAKLAGAHDFISE 126
Query: 120 -----HMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLL 174
                + I G +G+                      +S GQR+R+ I   L++  K+L+ 
Sbjct: 127 LREGYNTIVGEQGAG---------------------LSGGQRQRIAIARALVNNPKILIF 165
Query: 175 DEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEK 234
           DE T  LD  +   ++      C  +G T++   H    ++  A  +  ++ G++    K
Sbjct: 166 DEATSALDYESEHVIMRNMHKIC--KGRTVIIIAHRLSTVKN-ADRIIVMEKGKIVEQGK 222
Query: 235 LAEL 238
             EL
Sbjct: 223 HKEL 226

>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/201 (24%), Positives = 85/201 (42%), Gaps = 21/201 (10%)
Query: 13  SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKH--MVGG 70
           ++ V  + F Y+  +   LF   N  ++ G    ++G NG GK+TLL +L G H  + G 
Sbjct: 4   ALSVENLGFYYQAENF--LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGK 61
Query: 71  RDVVQVLN-RSSFHDTQLVCSG-DLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGS 128
            +V Q +     F  +    S  D+  +G S      +    P   D+        ++  
Sbjct: 62  IEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAK---PKSHDYQV-----AMQAL 113
Query: 129 DPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMD 188
           D +    L +            +S GQR+ + I   +    K++LLDE T  LD+  +  
Sbjct: 114 DYLNLTHLAK-------REFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDI 166
Query: 189 LLDFFKDECEQRGATIVYATH 209
           +L    D  + +  T+V+ TH
Sbjct: 167 VLSLLIDLAQSQNMTVVFTTH 187

>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 104/248 (41%), Gaps = 41/248 (16%)
Query: 4    GMNENEKLNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILA 63
            G+  N    +++  G+ F+Y      P+    +L +  G    LVG++G GK+T      
Sbjct: 1021 GLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKST------ 1074
Query: 64   GKHMVGGRDVVQVLNRSSFHD----TQLVCSGDLSYLGGSWSKT-VGSAGEIPLQGDFS- 117
                     VVQ+L R  F+D    +  +   ++  L   W +  +G   + P+  D S 
Sbjct: 1075 ---------VVQLLER--FYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSI 1123
Query: 118  AEHMIFG-----------VEGSDPVRRERLIELLDIDLQWRM----HKVSDGQRRRVQIC 162
            AE++ +G           V  +      + I+ L      R+     ++S GQ++R+ I 
Sbjct: 1124 AENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIA 1183
Query: 163  MGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLA 222
              L+    +LLLDE T  LD  +   + +      E  G T +   H    ++  A  + 
Sbjct: 1184 RALVRQPHILLLDEATSALDTESEKVVQEALDKARE--GRTCIVIAHRLSTIQN-ADLIV 1240
Query: 223  YIQDGELR 230
             IQ+G+++
Sbjct: 1241 VIQNGKVK 1248

>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 104/248 (41%), Gaps = 41/248 (16%)
Query: 4    GMNENEKLNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILA 63
            G+  N    +++  G+ F+Y      P+    +L +  G    LVG++G GK+T      
Sbjct: 1021 GLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKST------ 1074
Query: 64   GKHMVGGRDVVQVLNRSSFHD----TQLVCSGDLSYLGGSWSKT-VGSAGEIPLQGDFS- 117
                     VVQ+L R  F+D    +  +   ++  L   W +  +G   + P+  D S 
Sbjct: 1075 ---------VVQLLER--FYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSI 1123
Query: 118  AEHMIFG-----------VEGSDPVRRERLIELLDIDLQWRM----HKVSDGQRRRVQIC 162
            AE++ +G           V  +      + I+ L      R+     ++S GQ++R+ I 
Sbjct: 1124 AENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIA 1183
Query: 163  MGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLA 222
              L+    +LLLDE T  LD  +   + +      E  G T +   H    ++  A  + 
Sbjct: 1184 RALVRQPHILLLDEATSALDTESEKVVQEALDKARE--GRTCIVIAHRLSTIQN-ADLIV 1240
Query: 223  YIQDGELR 230
             IQ+G+++
Sbjct: 1241 VIQNGKVK 1248

>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 55/244 (22%), Positives = 103/244 (42%), Gaps = 50/244 (20%)
Query: 19  MQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILA-------GKHMVGGR 71
           ++F Y+  D P +  + NL I  G    +VG +GSGK+TL K++        G+ ++ G 
Sbjct: 13  IRFRYKP-DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGH 71
Query: 72  DVV------------QVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAE 119
           D+              VL  +   +  ++ +  L+  G S  K +  A ++    DF +E
Sbjct: 72  DLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVI-YAAKLAGAHDFISE 130
Query: 120 -----HMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLL 174
                + I G +G+                      +S GQR+R+ I   L++  K+L+ 
Sbjct: 131 LREGYNTIVGEQGAG---------------------LSGGQRQRIAIARALVNNPKILIF 169
Query: 175 DEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEK 234
           D+ T  LD  +   ++      C  +G T++   H    ++  A  +  ++ G++    K
Sbjct: 170 DQATSALDYESEHVIMRNMHKIC--KGRTVIIIAHRLSTVKN-ADRIIVMEKGKIVEQGK 226
Query: 235 LAEL 238
             EL
Sbjct: 227 HKEL 230

>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 97/225 (43%), Gaps = 29/225 (12%)
Query: 20  QFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNR 79
           + +Y  +D        N+ I  G    ++G NG GK+TL +   G           +L  
Sbjct: 12  ELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNG-----------ILKP 60
Query: 80  SS---FHDTQLVCSGDLSYLG-GSWSKTVGSAGEIPLQGDFSA---EHMIFGVEG----S 128
           SS     D + +   D S  G     +++G   + P    FSA   + + FG        
Sbjct: 61  SSGRILFDNKPI---DYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPE 117
Query: 129 DPVRRERLIELLDIDLQW----RMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVV 184
           D +R+     L    ++       H +S GQ++RV I   L+   KVL+LDE T  LD +
Sbjct: 118 DEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPM 177
Query: 185 ARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL 229
              +++    +  ++ G TI+ ATH  D +  +  ++  +++G +
Sbjct: 178 GVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRV 222

>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 80/173 (46%), Gaps = 17/173 (9%)
Query: 19  MQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKIL-------AGKHMVGGR 71
           + F+Y  +D   +  D +    P S     G +G GK+T+  +L       AG+  + G+
Sbjct: 7   VDFAY--DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQ 64
Query: 72  DVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPV 131
            +  + +  ++       S D + + G+  + +       L+GD++ E + + V      
Sbjct: 65  PIDNI-SLENWRSQIGFVSQDSAIMAGTIRENLTYG----LEGDYTDEDL-WQVLDLAFA 118
Query: 132 RR--ERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLD 182
           R   E + + L+ ++  R  K+S GQR+R+ I    L   K+L+LDE T  LD
Sbjct: 119 RSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLD 171

>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 95/218 (43%), Gaps = 23/218 (10%)
Query: 21  FSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILA-------GKHMVGGRDV 73
           F+Y G D P L  + NL I  G    LVG +GSGK+T+  ++        G+ ++ G D+
Sbjct: 349 FTYPGRDVPAL-RNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMDGHDL 407
Query: 74  VQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRR 133
            +    +S  +   + S ++     + +  +  A        +S E +    E +     
Sbjct: 408 RE-YTLASLRNQVALVSQNVHLFNDTVANNIAYART----EQYSREQI---EEAARMAYA 459
Query: 134 ERLIELLDIDLQWRMHK----VSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDL 189
              I  +D  L   + +    +S GQR+R+ I   LL    +L+LDE T  LD  +   +
Sbjct: 460 MDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAI 519
Query: 190 LDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDG 227
                DE ++   ++V A H    +E  A  +  ++DG
Sbjct: 520 QAAL-DELQKNRTSLVIA-HRLSTIEK-ADEIVVVEDG 554

>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome Length = 976

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 14  IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGK 65
           +KV   +F Y G  KP +  D N   S  SR  ++G NG+GK+TL+ +L G+
Sbjct: 666 VKVTNXEFQYPGTSKPQI-TDINFQCSLSSRIAVIGPNGAGKSTLINVLTGE 716

>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp Length = 986

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 14  IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGK 65
           +KV   +F Y G  KP +  D N   S  SR  ++G NG+GK+TL+ +L G+
Sbjct: 672 VKVTNXEFQYPGTSKPQI-TDINFQCSLSSRIAVIGPNGAGKSTLINVLTGE 722

>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 48/230 (20%), Positives = 94/230 (40%), Gaps = 14/230 (6%)
Query: 19  MQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKIL-------AGKHMVGGR 71
           + F+Y       +       + PG    LVG NGSGK+T+  +L        G+ ++ G+
Sbjct: 20  VSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGK 79
Query: 72  DVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSA-GEIPLQGDFSAEHMIFGVEGSDP 130
            + Q  +R   H        +    G S  + +     + P   + +A  +  G      
Sbjct: 80  PLPQYEHR-YLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFI- 137
Query: 131 VRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLL 190
                L +  D ++     ++S GQR+ V +   L+    VL+LD+ T  LD  +++ + 
Sbjct: 138 ---SGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVE 194
Query: 191 DFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDE 240
               +  E+   +++  T     +E  A H+ +++ G +R      +L E
Sbjct: 195 QLLYESPERYSRSVLLITQHLSLVE-QADHILFLEGGAIREGGTHQQLME 243

>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their Ribosomal Binding Partners Length = 608

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 77/161 (47%), Gaps = 16/161 (9%)
Query: 41  PGSRCLLVGANGSGKTTLLKILAGKHMVG-GR--------DVVQVLNRSSFHD--TQLVC 89
           PG    LVG NG GK+T LKILAGK     GR        ++++    S   +  T+++ 
Sbjct: 102 PGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLE 161
Query: 90  SGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDID--LQWR 147
               + +   +   +  A + P+Q     E +   +E S P   +R I++L ++  L+  
Sbjct: 162 DDIKAIIKPQYVDNIPRAIKGPVQK--VGELLKLRMEKS-PEDVKRYIKILQLENVLKRD 218
Query: 148 MHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMD 188
           + K+S G+ +R  I M  +    V + DE +  LDV  R++
Sbjct: 219 IEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLN 259

>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 50/225 (22%), Positives = 96/225 (42%), Gaps = 16/225 (7%)
Query: 14  IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKIL-------AGKH 66
           +K   + F+Y  +    +       + PG    LVG NGSGK+T+  +L        GK 
Sbjct: 17  VKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKV 76
Query: 67  MVGGRDVVQVLNRSSFHDTQLVCSGDLSYL-GGSWSKTVGSA-GEIPLQGDFSAEHMIFG 124
           ++ G  +VQ  +   +  TQ+   G    L G S+ + +       P   + +A  M  G
Sbjct: 77  LLDGEPLVQYDHH--YLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESG 134
Query: 125 VEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVV 184
               D +      +  D ++    ++++ GQR+ V +   L+   ++L+LD  T  LD  
Sbjct: 135 AH--DFI--SGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAG 190
Query: 185 ARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL 229
            ++ +     +  E    T++  T     L   A H+ ++++G +
Sbjct: 191 NQLRVQRLLYESPEWASRTVLLITQQLS-LAERAHHILFLKEGSV 234

>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From Pyrococcus Furiosus Pfu-867808-001 Length = 214

Iteration: 1
 Score = 44.3 bits (103), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 87/192 (45%), Gaps = 33/192 (17%)
Query: 25  GNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKI-------LAGKHMVGGRDVVQVL 77
           G DKP +     + I  G+     G NG GKTTLLK        L G+ +  G  + +V 
Sbjct: 19  GYDKP-VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVK 77
Query: 78  NRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLI 137
            +  F   +++    +S     + K V S               ++GV+    V +  ++
Sbjct: 78  GKIFFLPEEIIVPRKISV--EDYLKAVAS---------------LYGVK----VNKNEIM 116
Query: 138 ELLD----IDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFF 193
           + L+    +DL+ ++ ++S G  RRVQ+   LL   ++ +LD+  V +D  ++  +L   
Sbjct: 117 DALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSI 176
Query: 194 KDECEQRGATIV 205
            +  +++G  I+
Sbjct: 177 LEILKEKGIVII 188

>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355

Iteration: 1
 Score = 43.9 bits (102), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 92/225 (40%), Gaps = 62/225 (27%)
Query: 13  SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRD 72
           +I+  G++  Y G  +      F   I  G    L+G +GSGKTT+L+++AG        
Sbjct: 14  TIEFVGVEKIYPGGARSVRGVSFQ--IREGEMVGLLGPSGSGKTTILRLIAG-------- 63
Query: 73  VVQVLNRSSFHDTQLVCSGDLSYLGGS-------WSKTVGSAGEIPLQGDFSAEHMI--- 122
               L R +         GD+ ++GG          + VG    +  Q     +HM    
Sbjct: 64  ----LERPT--------KGDV-WIGGKRVTDLPPQKRNVG----LVFQNYALFQHMTVYD 106
Query: 123 ---FGVEGSDPVRRERLIELLDIDLQWRM---------------HKVSDGQRRRVQICMG 164
              FG+       RE+ +   ++D + R                H++S GQ++RV +   
Sbjct: 107 NVSFGL-------REKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARA 159
Query: 165 LLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATH 209
           L    +VLL DE    +D   R +L  F +   ++ G T V+ TH
Sbjct: 160 LAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTH 204

>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 79/190 (41%), Gaps = 39/190 (20%)
Query: 14  IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKIL-------AGKH 66
           I +  + F Y  N+  P+  D NL I  G     VG +G GK+TL+ ++       +G+ 
Sbjct: 340 IDIDHVSFQYNDNE-APILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQI 398
Query: 67  MVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFG-- 124
           ++ G ++   L  S  +   LV   ++ +                   D   E+++ G  
Sbjct: 399 LIDGHNIKDFLTGSLRNQIGLVQQDNILF------------------SDTVKENILLGRP 440
Query: 125 -------VEGSDPVRRERLIELL----DIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLL 173
                  VE +        I  L    D ++  R  K+S GQ++R+ I    L+   +L+
Sbjct: 441 TATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILI 500
Query: 174 LDEITVDLDV 183
           LDE T  LD+
Sbjct: 501 LDEATSALDL 510

>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 91/208 (43%), Gaps = 30/208 (14%)
Query: 35  FNLGISPGSRCLLVGANGSGKTTLLKILAG-------KHMVGGRDVVQVLNRSSFHDTQL 87
            NL I  G   +L+G +G GKTT L+++AG       +   G RDV  +  +    +  +
Sbjct: 30  LNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKD--RNISM 87
Query: 88  VCSGDLSYLGGSWSK-TVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRER-LIELLDID-- 143
           V     SY    W   TV      PL+        I      +  +R R   ELL I+  
Sbjct: 88  VFQ---SY--AVWPHMTVYENIAFPLK--------IKKFPKDEIDKRVRWAAELLQIEEL 134
Query: 144 LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGAT 203
           L     ++S GQR+RV +   ++    VLL+DE   +LD   R+ +    K   ++   T
Sbjct: 135 LNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVT 194
Query: 204 IVYATHIFDGLE--TWATHLAYIQDGEL 229
            +Y TH  D +E  T    +A +  G+L
Sbjct: 195 TIYVTH--DQVEAMTMGDRIAVMNRGQL 220

>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 91/208 (43%), Gaps = 30/208 (14%)
Query: 35  FNLGISPGSRCLLVGANGSGKTTLLKILAG-------KHMVGGRDVVQVLNRSSFHDTQL 87
            NL I  G   +L+G +G GKTT L+++AG       +   G RDV  +  +    +  +
Sbjct: 31  LNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKD--RNISM 88
Query: 88  VCSGDLSYLGGSWSK-TVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRER-LIELLDID-- 143
           V     SY    W   TV      PL+        I      +  +R R   ELL I+  
Sbjct: 89  VFQ---SY--AVWPHMTVYENIAFPLK--------IKKFPKDEIDKRVRWAAELLQIEEL 135
Query: 144 LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGAT 203
           L     ++S GQR+RV +   ++    VLL+DE   +LD   R+ +    K   ++   T
Sbjct: 136 LNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVT 195
Query: 204 IVYATHIFDGLE--TWATHLAYIQDGEL 229
            +Y TH  D +E  T    +A +  G+L
Sbjct: 196 TIYVTH--DQVEAMTMGDRIAVMNRGQL 221

>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 95/216 (43%), Gaps = 19/216 (8%)
Query: 21  FSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILA-------GKHMVGGRDV 73
           F+Y G + P L  + NL I  G    LVG +GSGK+T+  ++        G  ++ G D+
Sbjct: 349 FTYPGREVPAL-RNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDL 407
Query: 74  VQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSA--GEIPLQGDFSAEHMIFGVEGSDPV 131
            +    +S  +   + S ++     + +  +  A   E   +    A  M + ++  +  
Sbjct: 408 RE-YTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFIN-- 464
Query: 132 RRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLD 191
              ++   LD  +      +S GQR+R+ I   LL    +L+LDE T  LD  +   +  
Sbjct: 465 ---KMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQA 521
Query: 192 FFKDECEQRGATIVYATHIFDGLETWATHLAYIQDG 227
              DE ++   ++V A H    +E  A  +  ++DG
Sbjct: 522 AL-DELQKNRTSLVIA-HRLSTIEQ-ADEIVVVEDG 554

>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 94/234 (40%), Gaps = 43/234 (18%)
Query: 14  IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKIL-------AGKH 66
           I+   + FSY   D      D +  + PG    LVG +G+GK+T+L++L       +G  
Sbjct: 54  IEFENVHFSYA--DGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCI 111
Query: 67  MVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFG-- 124
            + G+D+ QV   S             S++G     TV       L  D  A+++ +G  
Sbjct: 112 RIDGQDISQVTQASL-----------RSHIGVVPQDTV-------LFNDTIADNIRYGRV 153
Query: 125 VEGSDPVRRE-----------RLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLL 173
             G+D V                 E     +  R  K+S G+++RV I   +L    ++L
Sbjct: 154 TAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIIL 213
Query: 174 LDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDG 227
           LDE T  LD      +       C  R  TIV A  +   +   A  +  I+DG
Sbjct: 214 LDEATSALDTSNERAIQASLAKVCANR-TTIVVAHRLSTVVN--ADQILVIKDG 264

>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/215 (23%), Positives = 99/215 (46%), Gaps = 19/215 (8%)
Query: 34  DFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL 93
           + N+ I  G R  ++G +G+GKTT ++I+AG  +    ++        + D +LV S   
Sbjct: 23  NVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL--------YFDDRLVASNG- 73
Query: 94  SYLGGSWSKTVGSAGEI-PLQGDFSA-EHMIFGVEG----SDPVRR--ERLIELLDID-- 143
             +     + +G   +   L  + +A E++ F +       + +R+  E + ++LDI   
Sbjct: 74  KLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHV 133
Query: 144 LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGAT 203
           L     ++S GQ++RV +   L+    +LLLDE   +LD   R       K+   + G T
Sbjct: 134 LNHFPRELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVT 193
Query: 204 IVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL 238
           ++  +H    +   A  +  +  G+L +  K  +L
Sbjct: 194 LLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228

>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp- Binding Protein (cbio-2), St1066 Length = 263

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 53/226 (23%), Positives = 103/226 (45%), Gaps = 40/226 (17%)
Query: 14  IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKIL------AGKHM 67
           +K  G+  S +G ++  L  + NL ++ G + +++G NGSGKTTLL+ +      +G   
Sbjct: 4   LKNVGITLSGKGYERFSL-ENINLEVN-GEKVIILGPNGSGKTTLLRAISGLLPYSGNIF 61
Query: 68  VGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEG 127
           + G +V ++ N                Y+   +S  +  A EI +    +   +++  E 
Sbjct: 62  INGMEVRKIRN----------------YI--RYSTNLPEAYEIGV----TVNDIVYLYEE 99
Query: 128 SDPVRRERLIELLDI------DLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDL 181
              + R+  +E+L         L+ +++K+S GQ   V+  + L    +++ LDE   ++
Sbjct: 100 LKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENV 159
Query: 182 DVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDG 227
           D  AR  ++  +  E  + G   +  TH  D L  +  + AY   G
Sbjct: 160 D-AARRHVISRYIKEYGKEG---ILVTHELDMLNLYKEYKAYFLVG 201

>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 59/262 (22%), Positives = 109/262 (41%), Gaps = 24/262 (9%)
Query: 35  FNLGISPGSRCLLVGANGSGKTTLL-----------KILAGKHMVGGRDVVQV----LNR 79
            +L I   S   +VG + SGK+T++           +IL+G+ +  G+D++ +    L +
Sbjct: 27  ISLDILENSVTAIVGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKDLLTMREEELRK 86
Query: 80  SSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIEL 139
             + +  LV       L  +          +   G     H     + S+ +R  RL   
Sbjct: 87  IRWKEIALVPQAAQQSLNPTMKVIEHFKDTVEAHG-VRWSHSELIEKASEKLRMVRLNP- 144
Query: 140 LDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQ 199
            +  L     ++S G ++RV I + LL    VL+LDE T  LDV+ +  ++   K+  + 
Sbjct: 145 -EAVLNSYPLQLSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQLLKELKKM 203
Query: 200 RGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDELRNSTNLLS--VVESWLRS 257
              T+++ TH        A  +A I  G L   E  +     +N  +  +  ++ S +  
Sbjct: 204 LKITLIFVTHDIAVAAELADKVAVIYGGNL--VEYNSTFQIFKNPLHPYTRGLINSIMAV 261
Query: 258 ETKLEKKRPV--DPPKQVQKTS 277
              + K +P+  DPP  +   S
Sbjct: 262 NADMSKVKPIPGDPPSLLNPPS 283

>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 98/215 (45%), Gaps = 19/215 (8%)
Query: 34  DFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL 93
           + N+ I  G R  ++G +G+GKTT ++I+AG  +    ++        + D +LV S   
Sbjct: 23  NVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL--------YFDDRLVASNG- 73
Query: 94  SYLGGSWSKTVGSAGEI-PLQGDFSA-EHMIFGVEG----SDPVRR--ERLIELLDID-- 143
             +     + +G   +   L  + +A E++ F +       + +R+  E + ++LDI   
Sbjct: 74  KLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHV 133
Query: 144 LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGAT 203
           L     ++S  Q++RV +   L+    +LLLDE   +LD   R       K+   + G T
Sbjct: 134 LNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVT 193
Query: 204 IVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL 238
           ++  +H    +   A  +  +  G+L +  K  +L
Sbjct: 194 LLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228

>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375

Iteration: 1
 Score = 40.8 bits (94), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 90/211 (42%), Gaps = 22/211 (10%)
Query: 34  DFNLGISPGSRCLLVGANGSGKTTLLKILAG-KHMVGGR-----DVVQVLNRSSFHDTQL 87
           D +L I  G   +L+G +G GKTT L+ +AG +    G+     ++V    +  F   + 
Sbjct: 24  DLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGVFVPPK- 82
Query: 88  VCSGDLSYLGGSWS----KTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDID 143
               D++ +  S++     TV      PL+     +  I      D   RE + E L + 
Sbjct: 83  --ERDVAXVFQSYALYPHXTVYDNIAFPLKLRKVPKQEI------DKRVRE-VAEXLGLT 133
Query: 144 --LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRG 201
             L  +  ++S GQR+RV +   ++   KV L DE   +LD   R+      K    Q G
Sbjct: 134 ELLNRKPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQRQLG 193
Query: 202 ATIVYATHIFDGLETWATHLAYIQDGELRRA 232
            T +Y TH      T    +A    GEL++ 
Sbjct: 194 VTTIYVTHDQVEAXTXGDRIAVXNKGELQQV 224

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	294
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	4e-23
1sgw_A	214	Putative ABC transporter; structural genomics, P p	3e-21
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	2e-20
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	4e-19
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	5e-19
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	8e-19
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	2e-18
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	3e-18
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	3e-17
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	1e-17
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	4e-16
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	1e-17
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	5e-16
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	2e-15
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	1e-09
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	9e-08
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	6e-15
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	4e-13
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	1e-12
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	5e-12
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	1e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-08
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	6e-08
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	1e-07
2ghi_A	260	Transport protein; multidrug resistance protein, M	7e-07
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	1e-06
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	1e-06
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	1e-06
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	1e-06
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	2e-06
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	3e-05
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	2e-06
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	1e-05
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	1e-05
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	1e-05
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	2e-05
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	2e-05
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	3e-05
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	1e-04
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	2e-04
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	2e-04
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	2e-04
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	6e-04
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	6e-04
1ji0_A	240	ABC transporter; ATP binding protein, structural g	8e-04

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256

 Score = 94.5 bits (236), Expect = 4e-23
 Identities = 55/237 (23%), Positives = 94/237 (39%), Gaps = 40/237 (16%)

Query: 34  DFNLGISPGSRCLLVGANGSGKTTLLKILA-------GKHMVGGRDVVQVLNRSSFHDTQ 86
             +  I  G    L+G NG+GKTT L+I++       G   V G++VV         +  
Sbjct: 33  GISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVV--------EEPH 84

Query: 87  LVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSA-EHMIF-----GVEGSDPVRRERLIELL 140
            V    +SYL            E     +    E++ F         S+    E +    
Sbjct: 85  EV-RKLISYL----------PEEAGAYRNMQGIEYLRFVAGFYASSSSE--IEEMVERAT 131

Query: 141 DI-DLQWRMHKV----SDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKD 195
           +I  L  ++       S G  R++ I   L+   ++ +LDE T  LDV+   ++    K 
Sbjct: 132 EIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQ 191

Query: 196 ECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDELRNSTNLLSVVE 252
             ++ G TI+ ++H    +E     +A I +G +     + EL E   + N+  V E
Sbjct: 192 ASQE-GLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQNIEEVFE 247

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214

 Score = 88.3 bits (220), Expect = 3e-21
 Identities = 40/213 (18%), Positives = 83/213 (38%), Gaps = 48/213 (22%)

Query: 34  DFNLGISPGSRCLLVGANGSGKTTLLKILA-------GKHMVGGRDVVQVLNRSSFHDTQ 86
              + I  G+     G NG GKTTLLK ++       G+ +  G  + +V  +       
Sbjct: 27  RITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGK------- 79

Query: 87  LVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSA-EHMIF-----GVEGSDPVRRERLIELL 140
                 + +L            EI +    S  +++       GV     V +  +++ L
Sbjct: 80  ------IFFL----------PEEIIVPRKISVEDYLKAVASLYGV----KVNKNEIMDAL 119

Query: 141 DI----DLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDE 196
           +     DL+ ++ ++S G  RRVQ+   LL   ++ +LD+  V +D  ++  +L    + 
Sbjct: 120 ESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEI 179

Query: 197 CEQRGATIVYATHIFDGLETWATHLAYIQDGEL 229
            +++G  I+ +        ++      +     
Sbjct: 180 LKEKGIVIISSREE----LSYCDVNENLHKYST 208

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279

 Score = 88.0 bits (219), Expect = 2e-20
 Identities = 48/252 (19%), Positives = 92/252 (36%), Gaps = 50/252 (19%)

Query: 14  IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDV 73
           I++  +    +G     +    +  I+ G + +L G NG+GKTTLL IL           
Sbjct: 22  IQLDQIGRMKQGK---TILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPA----- 73

Query: 74  VQVLNRSSFHDTQLVCSGDLSYLGGSWSKT-------------VGSAGEIPLQGDFSAEH 120
                           SG ++  G    K              V  +     Q       
Sbjct: 74  ---------------TSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVID 118

Query: 121 MI----FGVEG-------SDPVRRERLIELLDI-DLQWR-MHKVSDGQRRRVQICMGLLH 167
           ++    F   G              +L++L+ +     + +  +S G+++RV I   L+ 
Sbjct: 119 VVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMG 178

Query: 168 PFKVLLLDEITVDLDVVARMDLLDFFKDECEQ-RGATIVYATHIFDGLETWATHLAYIQD 226
             +VL+LDE    LD +AR  LL       +      ++Y TH  + +    + +  ++D
Sbjct: 179 QPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKD 238

Query: 227 GELRRAEKLAEL 238
           G+  +   + ++
Sbjct: 239 GQSIQQGAVEDI 250

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score = 86.2 bits (214), Expect = 4e-19
 Identities = 44/227 (19%), Positives = 75/227 (33%), Gaps = 35/227 (15%)

Query: 47  LVGANGSGKTTLLKILAGKH-MVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVG 105
           ++G NG+GKTTL+K+LAG      G+D+ ++                             
Sbjct: 383 MMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPK----------------- 425

Query: 106 SAGEIPLQGDFSAEHMIFG----VEGSDPVRRERLIELLDID--LQWRMHKVSDGQRRRV 159
                   G       +F      +  +P  +  +++ L ID  +   +  +S G+ +RV
Sbjct: 426 ------FPG---TVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRV 476

Query: 160 QICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWAT 219
            I + L  P  + L+DE +  LD   R+      +        T     H F      A 
Sbjct: 477 AIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLAD 536

Query: 220 HLAYIQDGELRRAEKLAELDELRNSTNLLSVVESWLRSETKLEKKRP 266
            +   +    + A   A    L      L  +    R        RP
Sbjct: 537 KVIVFEGIPSKNAHARAPESLLTGCNRFLKNLNVTFRR--DPNSFRP 581

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score = 85.9 bits (213), Expect = 5e-19
 Identities = 42/209 (20%), Positives = 70/209 (33%), Gaps = 34/209 (16%)

Query: 21  FSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGK------HMVGGRDVV 74
             Y  N              PG    LVG NG GK+T LKILAGK            +  
Sbjct: 85  HRYSANSFK---LHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQ 141

Query: 75  QVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSA------GEIPLQGDFSAEHMIFGVEGS 128
           +++      + Q       +Y        + +         IP         +    E  
Sbjct: 142 EIIKYFRGSELQ-------NYFTKMLEDDIKAIIKPQYVDNIPRA---IKGPVQKVGELL 191

Query: 129 DPVRRE------RLIELLDID--LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVD 180
                +      R I++L ++  L+  + K+S G+ +R  I M  +    V + DE +  
Sbjct: 192 KLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSY 251

Query: 181 LDVVARMDLLDFFKDECEQRGATIVYATH 209
           LDV  R++     +         ++   H
Sbjct: 252 LDVKQRLNAAQIIR-SLLAPTKYVICVEH 279

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253

 Score = 82.6 bits (205), Expect = 8e-19
 Identities = 47/212 (22%), Positives = 85/212 (40%), Gaps = 41/212 (19%)

Query: 12  NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAG--KHMVG 69
            ++ V  + F Y+   +  LF   N  ++ G    ++G NG GK+TLL +L G  + + G
Sbjct: 3   KALSVENLGFYYQA--ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQG 60

Query: 70  GRDVVQVL------NRSSFHDT--QLVCSGDLSYLG--GSWSKTVGSAGEIPLQGDFSAE 119
             +V Q +        S F  +   +V  G  +++                         
Sbjct: 61  KIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKS----------------- 103

Query: 120 HMIFGVEGSDPVRRERLIELLDI-DLQWR-MHKVSDGQRRRVQICMGLLHPFKVLLLDEI 177
                    D     + ++ L++  L  R    +S GQR+ + I   +    K++LLDE 
Sbjct: 104 --------HDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEP 155

Query: 178 TVDLDVVARMDLLDFFKDECEQRGATIVYATH 209
           T  LD+  +  +L    D  + +  T+V+ TH
Sbjct: 156 TSALDLANQDIVLSLLIDLAQSQNMTVVFTTH 187

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275

 Score = 82.2 bits (204), Expect = 2e-18
 Identities = 55/270 (20%), Positives = 110/270 (40%), Gaps = 61/270 (22%)

Query: 5   MNENEKLNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKIL-- 62
           M+  + +  +KV  + ++Y   D        N+ I  G    ++G NG GK+TL +    
Sbjct: 1   MSLEDYI--LKVEELNYNYS--DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNG 56

Query: 63  -----AGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFS 117
                +G+ +   + +    +R                      +++G    I  Q    
Sbjct: 57  ILKPSSGRILFDNKPID--YSRKGIMK---------------LRESIG----IVFQ---D 92

Query: 118 AEHMIF---------------GVEGSDPVRR-ERLIELLDI-DLQWRM-HKVSDGQRRRV 159
            ++ +F                +   +  +R +  ++   I  L+ +  H +S GQ++RV
Sbjct: 93  PDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRV 152

Query: 160 QICMGLL--HPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETW 217
            I  G+L   P KVL+LDE T  LD +   +++    +  ++ G TI+ ATH  D +  +
Sbjct: 153 AIA-GVLVMEP-KVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLY 210

Query: 218 ATHLAYIQDGELRR----AEKLAELDELRN 243
             ++  +++G +       E  AE + +R 
Sbjct: 211 CDNVFVMKEGRVILQGNPKEVFAEKEVIRK 240

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score = 83.5 bits (207), Expect = 3e-18
 Identities = 41/204 (20%), Positives = 75/204 (36%), Gaps = 31/204 (15%)

Query: 21  FSYEGNDKPPLFYDFNL-GISPGSRCLLVGANGSGKTTLLKILAGK----HMVGGRDVVQ 75
             Y  N     F  + L  +  G    +VG NG+GKTT +KILAG+              
Sbjct: 99  HRYGVNA----FVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDN 154

Query: 76  VLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAE--HMIFGVEGS----- 128
           V+     ++ Q       +Y         G    +  +  +       + G         
Sbjct: 155 VIRAFRGNELQ-------NYFE---RLKNGEIRPVV-KPQYVDLLPKAVKGKVRELLKKV 203

Query: 129 -DPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVA 185
            +  + E +++ L+++  L   +H++S G+ +RV I   LL        DE +  LD+  
Sbjct: 204 DEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQ 263

Query: 186 RMDLLDFFKDECEQRGATIVYATH 209
           R+ +    +      G  ++   H
Sbjct: 264 RLKVARVIR-RLANEGKAVLVVEH 286

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score = 80.8 bits (200), Expect = 3e-17
 Identities = 53/237 (22%), Positives = 90/237 (37%), Gaps = 29/237 (12%)

Query: 34  DFNLGISPGSRCLLVGANGSGKTTLLKILAGKH-MVGGRDVVQVLNRSSFHDTQLVCSGD 92
                I  G    +VG NG GKTT +K+LAG      G+    +    ++          
Sbjct: 374 VEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDL--TVAYKP-------- 423

Query: 93  LSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDID-LQWR-MHK 150
             Y+   +  TV          +  ++  I   + +    +  L++ L I  L  R +  
Sbjct: 424 -QYIKAEYEGTVY---------ELLSK--IDSSKLNSNFYKTELLKPLGIIDLYDRNVED 471

Query: 151 VSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHI 210
           +S G+ +RV I   LL    + LLDE +  LDV  R+ +    +   E+   T +   H 
Sbjct: 472 LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHD 531

Query: 211 FDGLETWATHLAYIQDGELRRAEKLAELDELRNSTN-LLSVVESWLRSETKLEKKRP 266
              ++  +  L    +GE  R  +      +R   N  L+ V    R +   +  RP
Sbjct: 532 VLMIDYVSDRLIVF-EGEPGRHGRALPPMGMREGMNRFLASVGITFRRDP--DSGRP 585

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score = 81.6 bits (202), Expect = 1e-17
 Identities = 38/202 (18%), Positives = 77/202 (38%), Gaps = 26/202 (12%)

Query: 21  FSYEGNDKPPLFYDFNLGI-SPGSRCLLVGANGSGKTTLLKILAG--KHMVGGRDVVQVL 77
             Y+ N     F  F L      +   ++G NG GKTT+LKILAG      G  +     
Sbjct: 7   HRYKVNG----FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGK 62

Query: 78  NR--SSFHDTQL------VCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSD 129
           +     F   ++      + S +L  +       +            +   ++  ++   
Sbjct: 63  DEVLKRFRGKEIYNYFKELYSNELKIV-----HKIQYVEYASKFLKGTVNEILTKIDERG 117

Query: 130 PVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARM 187
             +++ + ELL++        + +S G  +R+ +   LL    V + D+ +  LDV  RM
Sbjct: 118 --KKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERM 175

Query: 188 DLLDFFKDECEQRGATIVYATH 209
           ++    ++    +   ++   H
Sbjct: 176 NMAKAIRE--LLKNKYVIVVDH 195

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score = 77.4 bits (191), Expect = 4e-16
 Identities = 30/182 (16%), Positives = 60/182 (32%), Gaps = 33/182 (18%)

Query: 36  NLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSY 95
           N     G    ++G NG GKTT  +IL G+                         G ++ 
Sbjct: 288 NGEAKEGEIIGILGPNGIGKTTFARILVGEITA--------------------DEGSVTP 327

Query: 96  LGGSWSKTVGSAGEIPLQGDFSAEHMIF------GVEGSDPVRRERLIELLDI-DLQWR- 147
                 + +    +     ++      +          +     E + + L++  L    
Sbjct: 328 EK----QILSYKPQRIFP-NYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESN 382

Query: 148 MHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYA 207
           ++ +S G+ +++ I   L     + +LD+ +  LDV  R  +    K    +R A     
Sbjct: 383 VNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFII 442

Query: 208 TH 209
            H
Sbjct: 443 DH 444

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266

 Score = 79.6 bits (197), Expect = 1e-17
 Identities = 51/281 (18%), Positives = 104/281 (37%), Gaps = 58/281 (20%)

Query: 13  SIKVCGMQFSYEGND--KPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKIL-------A 63
            I+V  +   +      +     + +L I+ G   L+ G  GSGK+TLL+I+       +
Sbjct: 2   RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTS 61

Query: 64  GKHMVGGRDVVQVLNRSS------FHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFS 117
           G  +  G        R +      + + Q              ++ V             
Sbjct: 62  GDVLYDGERKKGYEIRRNIGIAFQYPEDQFF------------AERV------------- 96

Query: 118 AEHMIFGVE--GSDPVRRERLIELLDI------DLQWRM-HKVSDGQRRRVQICMGLL-- 166
            + + F V+    D      + + ++         + R+   +S G++RRV I   ++  
Sbjct: 97  FDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIA-SVIVH 155

Query: 167 HPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQD 226
            P  +L+LDE  V LD   + DLL   + + +  G T++  +H  + +      +  ++ 
Sbjct: 156 EP-DILILDEPLVGLDREGKTDLLRIVE-KWKTLGKTVILISHDIETVINHVDRVVVLEK 213

Query: 227 GELRR----AEKLAELDELRNSTNLLSVVESWLRSETKLEK 263
           G+        E L + D    ++ +L +    L+ E     
Sbjct: 214 GKKVFDGTRMEFLEKYDPRFFTSKMLVMRRLVLKGEDPFSM 254

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263

 Score = 75.1 bits (185), Expect = 5e-16
 Identities = 54/280 (19%), Positives = 101/280 (36%), Gaps = 40/280 (14%)

Query: 14  IKVCGMQFSYEG-NDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRD 72
           I++  +  +  G   +     + NL +  G + +++G NGSGKTTLL+ ++G        
Sbjct: 2   IQLKNVGITLSGKGYERFSLENINLEV-NGEKVIILGPNGSGKTTLLRAISG-------- 52

Query: 73  VVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMI------FG-- 124
                            SG++   G    K            +     +           
Sbjct: 53  ---------LLPY----SGNIFINGMEVRKIRNYIRYSTNLPEAYEIGVTVNDIVYLYEE 99

Query: 125 VEGSDPVRRERLIELLDID--LQWRM-HKVSDGQRRRVQICMGLLHPFKVLLLDEITVDL 181
           ++G D      +++ L +   +  R  +K+S GQ   V+  + L    +++ LDE   ++
Sbjct: 100 LKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENV 159

Query: 182 DVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDEL 241
           D   R  +  + K    + G   +  TH  D L  +  + AY   G   R +    + EL
Sbjct: 160 DAARRHVISRYIK----EYGKEGILVTHELDMLNLYKEYKAYFLVGN--RLQGPISVSEL 213

Query: 242 RNSTNLLSVVESWLRSETKLEKKRPVDPPKQVQKTSPFGS 281
             S+ +       L     ++KK  +       K    GS
Sbjct: 214 LESSIVEGERNDALLVLDIMDKKVSIVKGDLGMKFGALGS 253

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 75.8 bits (186), Expect = 2e-15
 Identities = 46/231 (19%), Positives = 86/231 (37%), Gaps = 34/231 (14%)

Query: 5   MNENEKLNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAG 64
             ++E+     +C  +FS     K  L     L +    R  + G NG GK+TL++ +A 
Sbjct: 425 NFDDEEDEGEDLCNCEFSLAYGAKI-LLNKTQLRLKRARRYGICGPNGCGKSTLMRAIA- 482

Query: 65  KHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIP-LQGDFSA-EHMI 122
                   V     +                      +TV    +I     D S  + + 
Sbjct: 483 -----NGQVDGFPTQEE-------------------CRTVYVEHDIDGTHSDTSVLDFVF 518

Query: 123 FGVEGSDPVRRERLIEL--LDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVD 180
               G+    +++LIE    D  +   +  +S G + ++ +   +L    +LLLDE T  
Sbjct: 519 ESGVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNH 578

Query: 181 LDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRR 231
           LD V    L+++        G T +  +H    L+    ++   +  +LR+
Sbjct: 579 LDTVNVAWLVNYLNT----CGITSITISHDSVFLDNVCEYIINYEGLKLRK 625

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 58.1 bits (140), Expect = 1e-09
 Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 14  IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGK 65
           +KV  M+F Y G  KP    D N   S  SR  ++G NG+GK+TL+ +L G+
Sbjct: 672 VKVTNMEFQYPGTSKP-QITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGE 722

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 52.3 bits (125), Expect = 9e-08
 Identities = 18/91 (19%), Positives = 38/91 (41%), Gaps = 4/91 (4%)

Query: 141 DIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQR 200
           +I    R+  +S GQ+ ++ +  G      +++LDE T  LD  +   L    K+     
Sbjct: 892 EIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKE----F 947

Query: 201 GATIVYATHIFDGLETWATHLAYIQDGELRR 231
              ++  TH  +  +     +  ++DG +  
Sbjct: 948 EGGVIIITHSAEFTKNLTEEVWAVKDGRMTP 978

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538

 Score = 73.5 bits (181), Expect = 6e-15
 Identities = 38/184 (20%), Positives = 73/184 (39%), Gaps = 24/184 (13%)

Query: 39  ISPGSRCLLVGANGSGKTTLLKILAGK---HMVGGRDVVQVLNRSSFHDTQLVCSGDLSY 95
           +  G    +VG NG+GK+T +KILAG+   ++ G  D    +   +F   +L      +Y
Sbjct: 44  VKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGV-IRAFRGNEL-----QNY 97

Query: 96  LGGSWSKTVGSAGEIPLQGDFSAE--HMIFG--VEGSDPV-RRERLIELLDI-DLQWRM- 148
                    G    +  +  +       + G  +E         +L E++   +L+  + 
Sbjct: 98  FE---KLKNGEIRPVV-KPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLE 153

Query: 149 ---HKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIV 205
                +S G+ +RV I   LL        DE +  LD+  R++     +    + G +++
Sbjct: 154 REIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIR-RLSEEGKSVL 212

Query: 206 YATH 209
              H
Sbjct: 213 VVEH 216

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538

 Score = 68.1 bits (167), Expect = 4e-13
 Identities = 49/234 (20%), Positives = 85/234 (36%), Gaps = 49/234 (20%)

Query: 47  LVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRS--------SFHDT--QLVCSGDLSYL 96
           +VG NG GKTT +K+LAG        +   L  +         +  T  +L+   D S  
Sbjct: 317 IVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYELLSKIDAS-- 374

Query: 97  GGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDID-LQWR-MHKVSDG 154
                                        + +    +  L++ L I  L  R ++++S G
Sbjct: 375 -----------------------------KLNSNFYKTELLKPLGIIDLYDREVNELSGG 405

Query: 155 QRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGL 214
           + +RV I   LL    + LLDE +  LDV  R+ +    +   E+   T +   H    +
Sbjct: 406 ELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMI 465

Query: 215 ETWATHLAYIQD--GELRRAEKLAELDELRNSTNLLSVVESWLRSETKLEKKRP 266
           +  +  L   +   G+  RA     + E  N    L+ +   +      +  RP
Sbjct: 466 DYVSDRLMVFEGEPGKYGRALPPMGMREGMNR--FLASIG--ITFRRDPDTGRP 515

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249

 Score = 65.7 bits (161), Expect = 1e-12
 Identities = 48/219 (21%), Positives = 83/219 (37%), Gaps = 40/219 (18%)

Query: 30  PLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNR--SSFHDTQL 87
                 +  +  G    LVG NG+GK+TLL  +AG     G   +Q   +   ++  T+L
Sbjct: 14  TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGS--IQFAGQPLEAWSATKL 71

Query: 88  VCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVE-GSDPVRRERLI----ELLDI 142
             +   +YL          + +          H    +        R  L+      L +
Sbjct: 72  --ALHRAYL----------SQQQTPPFATPVWHY---LTLHQHDKTRTELLNDVAGALAL 116

Query: 143 -DLQWRM-HKVSDGQRRRVQICMGLL-------HPFKVLLLDEITVDLDVVARMDLLDFF 193
            D   R  +++S G+ +RV++   +L          ++LLLDE    LDV  +  L    
Sbjct: 117 DDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKIL 176

Query: 194 KDECEQRGATIVYATHIFDGLE---TWATHLAYIQDGEL 229
               +Q G  IV ++H  D L      A     ++ G++
Sbjct: 177 SALSQQ-GLAIVMSSH--D-LNHTLRHAHRAWLLKGGKM 211

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235

 Score = 63.3 bits (155), Expect = 5e-12
 Identities = 60/233 (25%), Positives = 100/233 (42%), Gaps = 51/233 (21%)

Query: 36  NLGISPGSRCLLVGANGSGKTTLLKIL-------AGKHMVGGRDVVQVLNRS-------- 80
           NL I  G    ++G +GSGK+T+L I+        G+  +        L+          
Sbjct: 25  NLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTND-LDDDELTKIRRD 83

Query: 81  -------SFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRR 133
                   F+   L+    L+ L     + V    E+PL   +        + G +  RR
Sbjct: 84  KIGFVFQQFN---LI--PLLTAL-----ENV----ELPLIFKYRG-----AMSGEE--RR 122

Query: 134 ERLIELLD-IDLQWRM--HK---VSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARM 187
           +R +E L   +L+ R   HK   +S GQ++RV I   L +   ++L D+ T  LD     
Sbjct: 123 KRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGE 182

Query: 188 DLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDE 240
            ++   K   E+ G T+V  TH  + +  +   + Y++DGE+ R EKL   D+
Sbjct: 183 KIMQLLKKLNEEDGKTVVVVTHDIN-VARFGERIIYLKDGEVEREEKLRGFDD 234

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224

 Score = 56.4 bits (137), Expect = 1e-09
 Identities = 52/221 (23%), Positives = 90/221 (40%), Gaps = 54/221 (24%)

Query: 36  NLGISPGSRCLLVGANGSGKTTLLKIL-------AGKHMVGGRDVVQVLNRS-------- 80
           +L +  G    ++GA+GSGK+TLL IL        GK  + G++V    N          
Sbjct: 24  SLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDY-TNEKELSLLRNR 82

Query: 81  -------SFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRR 133
                    +   L+   +L+ L     + V     +P+        +  G    +   +
Sbjct: 83  KLGFVFQFHY---LI--PELTAL-----ENV----IVPM--------LKMGKPKKE--AK 118

Query: 134 ERLIELLD-IDLQWRMH----KVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMD 188
           ER   LL  + L  ++     ++S G+++RV I   L +   +L  DE T +LD      
Sbjct: 119 ERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKR 178

Query: 189 LLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL 229
           ++D F    E  G +IV  TH  + L         ++DG++
Sbjct: 179 VMDIFLKINEG-GTSIVMVTHERE-LAELTHRTLEMKDGKV 217

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.7 bits (128), Expect = 3e-08
 Identities = 48/276 (17%), Positives = 76/276 (27%), Gaps = 90/276 (32%)

Query: 26  NDKPPLFYDFN--------------LGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGR 71
           ND   +F  +N              L + P    L+ G  GSGKT +             
Sbjct: 121 ND-NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV------------- 166

Query: 72  DVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVG---SAGEI--PLQGDFSAEHMIFGVE 126
             + V         ++ C  D       W   +    S   +   LQ     +       
Sbjct: 167 -ALDVCL-----SYKVQCKMD---FKIFWL-NLKNCNSPETVLEMLQ-KLLYQIDPNWTS 215

Query: 127 GSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVAR 186
            SD     +L          R+H +    RR ++       P++  LL      L  V  
Sbjct: 216 RSDHSSNIKL----------RIHSIQAELRRLLK-----SKPYENCLL-----VLLNVQN 255

Query: 187 MDLLDFFKDECEQRGATIVYAT---HIFDGLETWATHLAYIQDGELRRAEKLAELDELRN 243
               + F   C      I+  T    + D L                    L        
Sbjct: 256 AKAWNAFNLSC-----KILLTTRFKQVTDFL-----------SAATTTHISLDHHSMTLT 299

Query: 244 STNLLSVVESWLRSETKLEKKRPVDPPKQVQKTSPF 279
              + S++  +L         RP D P++V  T+P 
Sbjct: 300 PDEVKSLLLKYL-------DCRPQDLPREVLTTNPR 328

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366

 Score = 52.3 bits (126), Expect = 6e-08
 Identities = 55/219 (25%), Positives = 93/219 (42%), Gaps = 45/219 (20%)

Query: 34  DFNLGISPGSRCLLVGANGSGKTTLLKIL-------AGKHMVGGRDVVQVLNRSS----- 81
           + +L +  G    ++GA+G+GK+TL++ +        G  +V G+++   L+ S      
Sbjct: 46  NVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTT-LSESELTKAR 104

Query: 82  ------FHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRER 135
                 F    L+            S+TV     +PL+        +      +   + R
Sbjct: 105 RQIGMIFQHFNLL-----------SSRTVFGNVALPLE--------LDNTPKDE--VKRR 143

Query: 136 LIELLDI-DLQWRMHK----VSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLL 190
           + ELL +  L  +       +S GQ++RV I   L    KVLL D+ T  LD      +L
Sbjct: 144 VTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSIL 203

Query: 191 DFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL 229
           +  KD   + G TI+  TH  D ++     +A I +GEL
Sbjct: 204 ELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGEL 242

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247

 Score = 50.6 bits (122), Expect = 1e-07
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 8/63 (12%)

Query: 21 FSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKIL-------AGKHMVGGRDV 73
          F Y+  D P +  + NL I  G    +VG +GSGK+TL K++        G+ ++ G D+
Sbjct: 15 FRYKP-DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDL 73

Query: 74 VQV 76
             
Sbjct: 74 ALA 76

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260

 Score = 48.3 bits (116), Expect = 7e-07
 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 6/66 (9%)

Query: 21 FSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKIL------AGKHMVGGRDVV 74
          FSY            N  I  G+ C LVG  GSGK+T+ K+L       G   +GG++V 
Sbjct: 25 FSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVN 84

Query: 75 QVLNRS 80
          +    S
Sbjct: 85 KYNRNS 90

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582

 Score = 48.7 bits (117), Expect = 1e-06
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 21  FSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKIL 62
           F+Y+G +KP L    +  I  G    LVG +GSGK+T+  + 
Sbjct: 349 FTYQGKEKPAL-SHVSFSIPQGKTVALVGRSGSGKSTIANLF 389

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578

 Score = 48.3 bits (116), Expect = 1e-06
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 8/60 (13%)

Query: 21  FSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKIL-------AGKHMVGGRDV 73
           F Y  N+ P L  D NL I  G     VG +G GK+TL+ ++       +G+ ++ G ++
Sbjct: 347 FQYNDNEAPIL-KDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNI 405

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582

 Score = 48.3 bits (116), Expect = 1e-06
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 8/60 (13%)

Query: 21  FSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKIL-------AGKHMVGGRDV 73
           F+Y G + P L  + NL I  G    LVG +GSGK+T+  ++        G  ++ G D+
Sbjct: 349 FTYPGREVPAL-RNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDL 407

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237

 Score = 47.5 bits (114), Expect = 1e-06
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAG 64
          +NSI V    F++  +D P L       I  G+   +VG  G GK++LL  L  
Sbjct: 1  MNSITVRNATFTWARSDPPTL-NGITFSIPEGALVAVVGQVGCGKSSLLSALLA 53

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 17/68 (25%), Positives = 36/68 (52%), Gaps = 7/68 (10%)

Query: 13   SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKIL-------AGK 65
            +++  G+ F+Y      P+    +L +  G    LVG++G GK+T++++L       AG 
Sbjct: 1030 NVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGS 1089

Query: 66   HMVGGRDV 73
              + G+++
Sbjct: 1090 VFLDGKEI 1097

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 7/68 (10%)

Query: 13  SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKIL-------AGK 65
           +++   + FSY    +  +    NL +  G    LVG +G GK+T ++++        G 
Sbjct: 387 NLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGM 446

Query: 66  HMVGGRDV 73
             + G+D+
Sbjct: 447 VSIDGQDI 454

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243

 Score = 47.1 bits (113), Expect = 2e-06
 Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 9/67 (13%)

Query: 14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKIL-------AGKH 66
          +    + F+Y+  D   +  D +    P S     G +G GK+T+  +L       AG+ 
Sbjct: 2  LSARHVDFAYD--DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59

Query: 67 MVGGRDV 73
           + G+ +
Sbjct: 60 TIDGQPI 66

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587

 Score = 45.6 bits (109), Expect = 1e-05
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 8/60 (13%)

Query: 21  FSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKIL-------AGKHMVGGRDV 73
           F Y  N  P L    N  + PGS   ++G  GSGK+TL+ ++        G+  V   DV
Sbjct: 349 FRYFENTDPVL-SGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDV 407

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598

 Score = 45.6 bits (109), Expect = 1e-05
 Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 10/72 (13%)

Query: 20  QFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKIL-------AGKHMVGGRD 72
            FSY+     P+  D    I PG +  LVG  GSGKTT++ +L        G+ +V G D
Sbjct: 361 WFSYDKKK--PVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGID 418

Query: 73  VVQVLNRSSFHD 84
           + ++  RSS   
Sbjct: 419 IRKI-KRSSLRS 429

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229

 Score = 44.5 bits (106), Expect = 1e-05
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAG 64
           + +  +   +E    P L  D N  I  G    + G+ G+GKT+LL ++ G
Sbjct: 6  EVVMENVTAFWEEGGTPVL-KDINFKIERGQLLAVAGSTGAGKTSLLMMIMG 56

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306

 Score = 44.5 bits (106), Expect = 2e-05
 Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 9/67 (13%)

Query: 21  FSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKIL-------AGKHMVGGRDV 73
           FSY   D      D +  + PG    LVG +G+GK+T+L++L       +G   + G+D+
Sbjct: 61  FSYA--DGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDI 118

Query: 74  VQVLNRS 80
            QV   S
Sbjct: 119 SQVTQAS 125

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271

 Score = 43.7 bits (104), Expect = 3e-05
 Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 8/78 (10%)

Query: 14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKIL-------AGKH 66
          +K   + F+Y  +    +       + PG    LVG NGSGK+T+  +L        GK 
Sbjct: 17 VKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKV 76

Query: 67 MVGGRDVVQVLNRSSFHD 84
          ++ G  +VQ  +    H 
Sbjct: 77 LLDGEPLVQ-YDHHYLHT 93

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355

 Score = 42.2 bits (100), Expect = 1e-04
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 7/50 (14%)

Query: 34 DFNLGISPGSRCLLVGANGSGKTTLLKILA-------GKHMVGGRDVVQV 76
            +  I  G    L+G +GSGKTT+L+++A       G   +GG+ V  +
Sbjct: 33 GVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDL 82

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 7/47 (14%)

Query: 34 DFNLGISPGSRCLLVGANGSGKTTLLKILAG-------KHMVGGRDV 73
          D +L + PG    ++GA+G GKTTLL+ LAG       +  + G+ +
Sbjct: 22 DISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTI 68

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 18/59 (30%), Positives = 27/59 (45%)

Query: 6  NENEKLNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAG 64
          N N +  S     + FS       P+  D N  I  G    + G+ G+GKT+LL ++ G
Sbjct: 28 NNNNRKTSNGDDSLSFSNFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMG 86

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348

 Score = 41.0 bits (97), Expect = 2e-04
 Identities = 13/50 (26%), Positives = 28/50 (56%), Gaps = 7/50 (14%)

Query: 34 DFNLGISPGSRCLLVGANGSGKTTLLKILA-------GKHMVGGRDVVQV 76
          + +L +  G   +++G  G+GKT  L+++A       G+ ++ G+DV  +
Sbjct: 18 NLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDL 67

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240

 Score = 39.5 bits (93), Expect = 6e-04
 Identities = 38/203 (18%), Positives = 73/203 (35%), Gaps = 63/203 (31%)

Query: 36  NLGISPGSRCL-LVGANGSGKTTLLKIL-------AGKHMVGG----------RDVVQVL 77
           N+    G     L+G  G+GK+  L+++        G+  + G          R +  V 
Sbjct: 17  NVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFV- 75

Query: 78  NRSSFHDTQLVCSGDLSY-----LGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEG-SDPV 131
                   Q        Y     L      +V               ++ +G+       
Sbjct: 76  ----P---Q-------DYALFPHL------SV-------------YRNIAYGLRNVERVE 102

Query: 132 RRERLIELLDI----DLQWRM-HKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVAR 186
           R  R+ E+ +      L  R   ++S G+R+RV +   L+   ++LLLDE    +D+  +
Sbjct: 103 RDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTK 162

Query: 187 MDLLDFFKDECEQRGATIVYATH 209
             L++  +    +    I++ TH
Sbjct: 163 GVLMEELRFVQREFDVPILHVTH 185

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353

 Score = 39.9 bits (94), Expect = 6e-04
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 7/47 (14%)

Query: 34 DFNLGISPGSRCLLVGANGSGKTTLLKILA-------GKHMVGGRDV 73
          + N+ I  G R  ++G +G+GKTT ++I+A       G+     R V
Sbjct: 23 NVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLV 69

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240

 Score = 39.0 bits (92), Expect = 8e-04
 Identities = 14/31 (45%), Positives = 19/31 (61%)

Query: 34 DFNLGISPGSRCLLVGANGSGKTTLLKILAG 64
            +L +  G    L+GANG+GKTT L  +AG
Sbjct: 24 GIDLKVPRGQIVTLIGANGAGKTTTLSAIAG 54

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	294
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	100.0
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	100.0
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	100.0
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	100.0
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	100.0
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	100.0
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	100.0
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	100.0
1g6h_A	257	High-affinity branched-chain amino acid transport	100.0
1b0u_A	262	Histidine permease; ABC transporter, transport pro	100.0
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	100.0
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	100.0
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	100.0
1ji0_A	240	ABC transporter; ATP binding protein, structural g	100.0
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	100.0
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	100.0
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	100.0
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	100.0
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	100.0
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	100.0
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	100.0
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	100.0
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	100.0
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	100.0
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	100.0
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	100.0
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	100.0
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	100.0
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	100.0
2ghi_A	260	Transport protein; multidrug resistance protein, M	100.0
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	100.0
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	100.0
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	100.0
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	100.0
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	100.0
1sgw_A	214	Putative ABC transporter; structural genomics, P p	100.0
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	100.0
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	100.0
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	100.0
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	100.0
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	100.0
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	100.0
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	100.0
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	100.0
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	100.0
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	100.0
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	100.0
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	100.0
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	100.0
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	100.0
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	100.0
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	100.0
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	100.0
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	100.0
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	100.0
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	100.0
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	100.0
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	100.0
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	100.0
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	100.0
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	100.0
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	100.0
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	100.0
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	100.0
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	99.97
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	99.96
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	99.96
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	99.94
1e69_A	322	Chromosome segregation SMC protein; structural mai	99.94
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	99.93
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	99.93
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	99.92
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	99.91
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	99.91
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	99.91
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	99.9
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.9
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	99.9
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	99.9
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	99.9
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	99.9
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	99.89
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	99.89
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	99.89
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.88
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	99.88
1f2t_B	148	RAD50 ABC-ATPase; DNA double-strand break repair,	99.88
2og2_A	359	Putative signal recognition particle receptor; nuc	99.87
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	99.87
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	99.86
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	99.86
4a74_A	231	DNA repair and recombination protein RADA; hydrola	99.85
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	99.84
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	99.84
2eyu_A	261	Twitching motility protein PILT; pilus retraction	99.84
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	99.84
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	99.83
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	99.83
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	99.83
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	99.82
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	99.82
2cvh_A	220	DNA repair and recombination protein RADB; filamen	99.8
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	99.79
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.78
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.78
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	99.77
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	99.75
3kta_B	173	Chromosome segregation protein SMC; structural mai	99.75
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	99.75
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	99.75
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	99.73
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	99.71
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	99.71
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.68
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	99.68
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	99.67
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	99.63
2ewv_A	372	Twitching motility protein PILT; pilus retraction	99.62
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	99.61
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	99.6
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	99.6
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	99.6
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	99.56
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	99.55
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.55
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	99.55
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	99.54
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.47
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	99.47
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	99.46
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	99.45
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	99.42
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	99.4
1p9r_A	418	General secretion pathway protein E; bacterial typ	99.4
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	99.38
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	99.36
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	99.35
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	99.34
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	99.34
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	99.33
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	99.33
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	99.32
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	99.32
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	99.31
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	99.31
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	99.3
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	99.3
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.29
2r6a_A	454	DNAB helicase, replicative helicase; replication,	99.27
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	99.26
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	99.26
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	99.23
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	99.18
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.17
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	99.17
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	99.1
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	99.0
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	98.95
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	98.93
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	98.88
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	98.87
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	98.86
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	98.82
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	98.82
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.81
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	98.78
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	98.77
2z43_A	324	DNA repair and recombination protein RADA; archaea	98.76
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	98.75
3kta_A	182	Chromosome segregation protein SMC; structural mai	98.71
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	98.68
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	98.66
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	98.66
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	98.62
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	98.61
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	98.61
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	98.6
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	98.57
1u94_A	356	RECA protein, recombinase A; homologous recombinat	98.56
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	98.52
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	98.44
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	98.42
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.42
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	98.41
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	98.41
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	98.39
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	98.37
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	98.35
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	98.34
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	98.33
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	98.33
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	98.33
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	98.32
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	98.31
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	98.31
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	98.3
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	98.25
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	98.24
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	98.24
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	98.22
3ice_A	422	Transcription termination factor RHO; transcriptio	98.22
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	98.21
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	98.19
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	98.18
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	98.15
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	98.14
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	98.14
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	98.14
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	98.13
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	98.11
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	98.1
1xp8_A	366	RECA protein, recombinase A; recombination, radior	98.09
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	98.09
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	98.03
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	98.01
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	97.96
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	97.93
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	97.92
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	97.91
3bos_A	242	Putative DNA replication factor; P-loop containing	97.85
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	97.84
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	97.83
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	97.81
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	97.81
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	97.8
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.79
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	97.78
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	97.76
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	97.75
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	97.72
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.72
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.7
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	97.69
3io5_A	333	Recombination and repair protein; storage dimer, i	97.68
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	97.66
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	97.66
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	97.66
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	97.64
1q57_A	503	DNA primase/helicase; dntpase, DNA replication, tr	97.61
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	97.61
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	97.61
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	97.6
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	97.58
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	97.57
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	97.56
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	97.55
2wji_A	165	Ferrous iron transport protein B homolog; membrane	97.51
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	97.49
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	97.48
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.46
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.45
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	97.44
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	97.43
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	97.43
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	97.39
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	97.37
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	97.37
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	97.35
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	97.34
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.32
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	97.32
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.31
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	97.28
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.25
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	97.22
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.21
2qgz_A	308	Helicase loader, putative primosome component; str	97.21
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	97.17
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	97.17
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	97.17
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	97.17
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.17
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	97.15
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.14
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	97.13
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	97.13
1via_A	175	Shikimate kinase; structural genomics, transferase	97.12
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	97.11
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.09
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	97.07
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	97.07
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	97.06
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	97.06
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	97.04
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.04
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	97.01
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	97.0
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.99
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	96.96
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	96.96
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	96.96
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	96.95
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	96.91
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	96.91
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	96.87
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	96.85
2vli_A	183	Antibiotic resistance protein; transferase, tunica	96.85
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.83
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.83
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	96.81
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	96.8
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	96.8
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	96.77
1xx6_A	191	Thymidine kinase; NESG, northeast structural genom	96.76
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.74
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	96.74
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	96.73
2ged_A	193	SR-beta, signal recognition particle receptor beta	96.73
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	96.71
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	96.71
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	96.71
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	96.7
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.69
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	96.67
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.67
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.66
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	96.66
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.65
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.65
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	96.64
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	96.64
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.64
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	96.63
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	96.63
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.6
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	96.6
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	96.6
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	96.6
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	96.58
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	96.58
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.57
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	96.56
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.56
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	96.55
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.55
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	96.54
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	96.54
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	96.52
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	96.51
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	96.51
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	96.51
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	96.5
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	96.49
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	96.49
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	96.46
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	96.46
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	96.45
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	96.45
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	96.45
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	96.45
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.45
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	96.45
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	96.42
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	96.42
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	96.42
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	96.42
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.42
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	96.4
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	96.39
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	96.39
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	96.39
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	96.38
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	96.38
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	96.37
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	96.37
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	96.37
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	96.37
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	96.36
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	96.35
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	96.32
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	96.32
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	96.31
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	96.3
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	96.3
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	96.3
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	96.29
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	96.29
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	96.29
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	96.29
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	96.28
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	96.27
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	96.27
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	96.26
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	96.26
1nrj_B	218	SR-beta, signal recognition particle receptor beta	96.26
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	96.26
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.26
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	96.25
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	96.24
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.23
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	96.23
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	96.23
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	96.22
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	96.22
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	96.21
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	96.2
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	96.2
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	96.2
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	96.2
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	96.19
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	96.19
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	96.18
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	96.18
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	96.18
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	96.18
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	96.18
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	96.18
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	96.16
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	96.16
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	96.16
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	96.15
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	96.15
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	96.15
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	96.14
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	96.14
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.12
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	96.12
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	96.11
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	96.1
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	96.09
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	96.09
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	96.08
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	96.08
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	96.08
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	96.08
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	96.07
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	96.06
3llu_A	196	RAS-related GTP-binding protein C; structural geno	96.05
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	96.05
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	96.05
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	96.05
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	96.03
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	96.02
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	96.02
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	96.02
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	96.0
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	96.0
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.0
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	95.98
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	95.98
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	95.97
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	95.96
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	95.96
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	95.96
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	95.96
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	95.96
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	95.96
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	95.95
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	95.95
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	95.94
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	95.93
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	95.92
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	95.92
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	95.92
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	95.92
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	95.92
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	95.91
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	95.91
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	95.91
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	95.88
2fh5_B	214	SR-beta, signal recognition particle receptor beta	95.88
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	95.87
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	95.84
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	95.79
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	95.79
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	95.79
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	95.73
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	95.72
2hf9_A	226	Probable hydrogenase nickel incorporation protein	95.72
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	95.7
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	95.63
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	95.61
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	95.6
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	95.58
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	95.56
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	95.53
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	95.51
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	95.5
2orv_A	234	Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2	95.49
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	95.49
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	95.48
2j9r_A	214	Thymidine kinase; TK1, DNK, lasso, transferase, AT	95.43
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	95.42
3l0o_A	427	Transcription termination factor RHO; helicase, RH	95.42
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	95.33
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	95.31
2chg_A	226	Replication factor C small subunit; DNA-binding pr	95.3
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	95.25
1wxq_A	397	GTP-binding protein; structural genomics, riken st	95.25
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	95.24
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	95.19
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	95.18
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	94.0
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	94.99
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	94.97
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	94.96
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	94.96
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	94.92
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	94.91
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	94.91

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=100.00  E-value=9.7e-53  Score=376.59  Aligned_cols=220  Identities=22%  Similarity=0.248  Sum_probs=175.6

Q ss_pred             cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663           11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS   90 (294)
Q Consensus        11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~   90 (294)
                      .++|+++||+++|++  ..++|+||||+|++||+++|+||||||||||+|+|+|++.|+ +|.+.++|.+......    
T Consensus         5 ~~~l~i~~ls~~y~~--~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~-~G~I~~~G~~i~~~~~----   77 (275)
T 3gfo_A            5 DYILKVEELNYNYSD--GTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS-SGRILFDNKPIDYSRK----   77 (275)
T ss_dssp             CEEEEEEEEEEECTT--SCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCS-EEEEEETTEECCCSHH----
T ss_pred             CcEEEEEEEEEEECC--CCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC-CeEEEECCEECCcccc----
Confidence            357999999999975  245999999999999999999999999999999999999886 8999999876421000    


Q ss_pred             CCcccccccccccccccCccc--ccccccHH-HHhhcC--CCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHH
Q 022663           91 GDLSYLGGSWSKTVGSAGEIP--LQGDFSAE-HMIFGV--EGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRV  159 (294)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv  159 (294)
                           ....++..++++++.+  .+...+.. ++.++.  ....    .+++.++++.+++.  .++++.+|||||||||
T Consensus        78 -----~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv  152 (275)
T 3gfo_A           78 -----GIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRV  152 (275)
T ss_dssp             -----HHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHH
T ss_pred             -----cHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHH
Confidence                 0001223344444422  12234443 333321  1112    23466788899985  5789999999999999


Q ss_pred             HHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHH
Q 022663          160 QICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELD  239 (294)
Q Consensus       160 ~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  239 (294)
                      +|||||+.+|++|||||||+|||+.++..++++|.++.++.|+|||+||||++++..+||||++|++|+++..|+++++.
T Consensus       153 ~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~  232 (275)
T 3gfo_A          153 AIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVF  232 (275)
T ss_dssp             HHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHT
T ss_pred             HHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence            99999999999999999999999999999999999987445999999999999999999999999999999999999987


Q ss_pred             Hhh
Q 022663          240 ELR  242 (294)
Q Consensus       240 ~~~  242 (294)
                      ...
T Consensus       233 ~~~  235 (275)
T 3gfo_A          233 AEK  235 (275)
T ss_dssp             HHH
T ss_pred             cCH
Confidence            643

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=100.00  E-value=1.7e-52  Score=373.59  Aligned_cols=216  Identities=20%  Similarity=0.286  Sum_probs=176.7

Q ss_pred             CcccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccc
Q 022663           10 KLNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVC   89 (294)
Q Consensus        10 ~~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~   89 (294)
                      ++++|+++||++.|++   +++|+||||+|++||+++|+||||||||||+|+|+|++.|+ +|.+.++|.+......   
T Consensus         8 ~~~~l~~~~l~~~~~~---~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~-~G~I~~~g~~~~~~~~---   80 (266)
T 4g1u_C            8 PVALLEASHLHYHVQQ---QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPS-HGECHLLGQNLNSWQP---   80 (266)
T ss_dssp             CCCEEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCS-SCEEEETTEETTTSCH---
T ss_pred             CcceEEEEeEEEEeCC---eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC-CcEEEECCEECCcCCH---
Confidence            3468999999999975   57999999999999999999999999999999999999887 8999999876432110   


Q ss_pred             cCCcccccccccccccccCc-ccccccccHHHH-hhcCC----CCcHHHHHHHHHHcCCC--cccccccCCHHHHHHHHH
Q 022663           90 SGDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHM-IFGVE----GSDPVRRERLIELLDID--LQWRMHKVSDGQRRRVQI  161 (294)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~----~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~l  161 (294)
                              ..+...++++++ ..++..++..++ .++..    ....++..++++.+++.  .++++.+|||||||||+|
T Consensus        81 --------~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~i  152 (266)
T 4g1u_C           81 --------KALARTRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQL  152 (266)
T ss_dssp             --------HHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHH
T ss_pred             --------HHHhheEEEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHH
Confidence                    011122334433 223344555443 33321    12244567889999985  578899999999999999


Q ss_pred             HHHHcc------CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccH
Q 022663          162 CMGLLH------PFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKL  235 (294)
Q Consensus       162 AraL~~------~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~  235 (294)
                      ||||+.      +|++|||||||+|||+.++..++++|++++++.++|||+||||++++..+||||++|++|+++..|++
T Consensus       153 AraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~  232 (266)
T 4g1u_C          153 ARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTP  232 (266)
T ss_dssp             HHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECH
T ss_pred             HHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCH
Confidence            999999      99999999999999999999999999998776568999999999999999999999999999999999


Q ss_pred             HHHHH
Q 022663          236 AELDE  240 (294)
Q Consensus       236 ~~~~~  240 (294)
                      +++.+
T Consensus       233 ~~~~~  237 (266)
T 4g1u_C          233 EEVLN  237 (266)
T ss_dssp             HHHCC
T ss_pred             HHHhC
Confidence            98764

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=100.00  E-value=4.1e-52  Score=383.92  Aligned_cols=218  Identities=22%  Similarity=0.359  Sum_probs=181.3

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      +|+++||+++|++   ..+|+||||+|++||+++|+||||||||||||+|+|++.|+ +|.|.++|.+......     .
T Consensus         4 ~l~i~~ls~~y~~---~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~-~G~I~i~G~~i~~~~~-----~   74 (359)
T 3fvq_A            4 ALHIGHLSKSFQN---TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD-SGEISLSGKTIFSKNT-----N   74 (359)
T ss_dssp             CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCS-EEEEEETTEEEESSSC-----B
T ss_pred             EEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCC-CcEEEECCEECccccc-----c
Confidence            7999999999975   57999999999999999999999999999999999999887 9999999876522100     0


Q ss_pred             cccccccccccccccCc-ccccccccHHH-HhhcCCC--C-c---HHHHHHHHHHcCCC--cccccccCCHHHHHHHHHH
Q 022663           93 LSYLGGSWSKTVGSAGE-IPLQGDFSAEH-MIFGVEG--S-D---PVRRERLIELLDID--LQWRMHKVSDGQRRRVQIC  162 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~--~-~---~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lA  162 (294)
                         . ....+.++++++ ..+++.+++.+ +.++...  . .   .+++.++++.+++.  .++++.+|||||||||+||
T Consensus        75 ---~-~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValA  150 (359)
T 3fvq_A           75 ---L-PVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALA  150 (359)
T ss_dssp             ---C-CGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHH
T ss_pred             ---c-chhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHH
Confidence               0 012234555554 44666677654 4454321  1 1   23567888999985  6889999999999999999


Q ss_pred             HHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHHhh
Q 022663          163 MGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDELR  242 (294)
Q Consensus       163 raL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~  242 (294)
                      |||+.+|++|||||||++||+..+.++++.|.++.++.|.|+|+||||++++..+||||++|++|+++..|+++++....
T Consensus       151 rAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~p  230 (359)
T 3fvq_A          151 RALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQP  230 (359)
T ss_dssp             HHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred             HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhCc
Confidence            99999999999999999999999999999888887778999999999999999999999999999999999999987654


Q ss_pred             h
Q 022663          243 N  243 (294)
Q Consensus       243 ~  243 (294)
                      .
T Consensus       231 ~  231 (359)
T 3fvq_A          231 A  231 (359)
T ss_dssp             S
T ss_pred             c
Confidence            3

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=100.00  E-value=1.5e-52  Score=387.16  Aligned_cols=225  Identities=22%  Similarity=0.264  Sum_probs=180.6

Q ss_pred             CcccEEEcceEEEcCCCC-CCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccc
Q 022663           10 KLNSIKVCGMQFSYEGND-KPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLV   88 (294)
Q Consensus        10 ~~~~l~~~~ls~~y~~~~-~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~   88 (294)
                      .+++|+++||+++|++.. ...+|+||||+|++||++||+||||||||||+|+|+|++.|+ +|.+.++|.+........
T Consensus        21 ~~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~-~G~I~i~G~~i~~~~~~~   99 (366)
T 3tui_C           21 DKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT-EGSVLVDGQELTTLSESE   99 (366)
T ss_dssp             --CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS-EEEEEETTEECSSCCHHH
T ss_pred             CCceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCC-ceEEEECCEECCcCCHHH
Confidence            356899999999996421 135899999999999999999999999999999999999887 999999987653211000


Q ss_pred             ccCCcccccccccccccccCc-ccccccccHHHH-hhcC--CCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHH
Q 022663           89 CSGDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHM-IFGV--EGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRR  158 (294)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqR  158 (294)
                          .    ...++.++++++ ..+++.+++.++ .++.  ....    .+++.++++.+++.  .++++.+||||||||
T Consensus       100 ----~----~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQR  171 (366)
T 3tui_C          100 ----L----TKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQR  171 (366)
T ss_dssp             ----H----HHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHH
T ss_pred             ----H----HHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHH
Confidence                0    011234555554 345555665443 3321  1222    23467788999985  588999999999999


Q ss_pred             HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663          159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL  238 (294)
Q Consensus       159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~  238 (294)
                      |+|||||+.+|++|||||||++||+.++..++++|+++.++.|.|||+||||++++.++||||++|++|++++.|+++++
T Consensus       172 VaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev  251 (366)
T 3tui_C          172 VAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEV  251 (366)
T ss_dssp             HHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHH
T ss_pred             HHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence            99999999999999999999999999999999999999877799999999999999999999999999999999999998


Q ss_pred             HHhhh
Q 022663          239 DELRN  243 (294)
Q Consensus       239 ~~~~~  243 (294)
                      +....
T Consensus       252 ~~~p~  256 (366)
T 3tui_C          252 FSHPK  256 (366)
T ss_dssp             HSSCC
T ss_pred             HhCCC
Confidence            86543

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=100.00  E-value=3.5e-52  Score=386.84  Aligned_cols=215  Identities=25%  Similarity=0.337  Sum_probs=180.3

Q ss_pred             ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663           12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG   91 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~   91 (294)
                      .+|+++||+++|++   ..+|+||||+|++||+++|+||||||||||||+|+|++.|+ +|.|.++|.+......     
T Consensus         2 ~~l~~~~l~~~yg~---~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~-~G~I~i~G~~~~~~~~-----   72 (381)
T 3rlf_A            2 ASVQLQNVTKAWGE---VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT-SGDLFIGEKRMNDTPP-----   72 (381)
T ss_dssp             CCEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS-EEEEEETTEECTTCCG-----
T ss_pred             CEEEEEeEEEEECC---EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCC-CeEEEECCEECCCCCH-----
Confidence            36999999999975   57999999999999999999999999999999999999887 9999998876432110     


Q ss_pred             CcccccccccccccccCc-ccccccccHHHH-hhcC--CCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHH
Q 022663           92 DLSYLGGSWSKTVGSAGE-IPLQGDFSAEHM-IFGV--EGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQI  161 (294)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~l  161 (294)
                              ..+.++++++ ..+++.++..++ .++.  ....    .+++.++++.+++.  .++++.+|||||||||+|
T Consensus        73 --------~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVai  144 (381)
T 3rlf_A           73 --------AERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAI  144 (381)
T ss_dssp             --------GGSCEEEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHH
T ss_pred             --------HHCCEEEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHH
Confidence                    1123444444 445666666544 3332  1222    23567788999985  688999999999999999


Q ss_pred             HHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHHh
Q 022663          162 CMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDEL  241 (294)
Q Consensus       162 AraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  241 (294)
                      ||||+.+|++|||||||++||+..+.++++.|+++.++.|.|+|+||||++++..+||||++|++|+++..|+++++...
T Consensus       145 ArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~  224 (381)
T 3rlf_A          145 GRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY  224 (381)
T ss_dssp             HHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHC
T ss_pred             HHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhC
Confidence            99999999999999999999999999999999999877799999999999999999999999999999999999998765


Q ss_pred             hh
Q 022663          242 RN  243 (294)
Q Consensus       242 ~~  243 (294)
                      +.
T Consensus       225 p~  226 (381)
T 3rlf_A          225 PA  226 (381)
T ss_dssp             CS
T ss_pred             Cc
Confidence            43

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=100.00  E-value=1.9e-51  Score=364.85  Aligned_cols=215  Identities=22%  Similarity=0.313  Sum_probs=173.9

Q ss_pred             CcccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccc
Q 022663           10 KLNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVC   89 (294)
Q Consensus        10 ~~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~   89 (294)
                      .+++|+++||+++|++   +++|+++||+|++||+++|+||||||||||+|+|+|++.|+ +|.+.++|.+.....    
T Consensus        12 ~~~~l~i~~l~~~y~~---~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~-~G~I~~~g~~~~~~~----   83 (256)
T 1vpl_A           12 HMGAVVVKDLRKRIGK---KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS-SGIVTVFGKNVVEEP----   83 (256)
T ss_dssp             --CCEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS-EEEEEETTEETTTCH----
T ss_pred             cCCeEEEEEEEEEECC---EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC-ceEEEECCEECCccH----
Confidence            4789999999999965   57999999999999999999999999999999999998886 899999886542110    


Q ss_pred             cCCcccccccccccccccCc-ccccccccHHHHh-hcC--CCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHH
Q 022663           90 SGDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-FGV--EGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRV  159 (294)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv  159 (294)
                              ..++..++++++ ..++..++..+++ +..  ....    .+++.++++.+++.  .++++.+|||||||||
T Consensus        84 --------~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv  155 (256)
T 1vpl_A           84 --------HEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKL  155 (256)
T ss_dssp             --------HHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHH
T ss_pred             --------HHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHH
Confidence                    011223444444 2344555554433 211  1111    23456788889985  5788999999999999


Q ss_pred             HHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHH
Q 022663          160 QICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELD  239 (294)
Q Consensus       160 ~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  239 (294)
                      +|||||+.+|++|||||||+|||+.++..++++|.++.+ .|.|||+||||++++..+||++++|++|+++..|+++++.
T Consensus       156 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  234 (256)
T 1vpl_A          156 LIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ-EGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELK  234 (256)
T ss_dssp             HHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHH
T ss_pred             HHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHh-CCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHH
Confidence            999999999999999999999999999999999999864 4899999999999999999999999999999999998886


Q ss_pred             Hh
Q 022663          240 EL  241 (294)
Q Consensus       240 ~~  241 (294)
                      +.
T Consensus       235 ~~  236 (256)
T 1vpl_A          235 ER  236 (256)
T ss_dssp             HH
T ss_pred             Hh
Confidence            53

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=100.00  E-value=3.8e-51  Score=364.12  Aligned_cols=216  Identities=20%  Similarity=0.250  Sum_probs=174.8

Q ss_pred             ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663           12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG   91 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~   91 (294)
                      ++|+++||+++|++   +++|+||||+|++||+++|+||||||||||+|+|+|++.|+ +|.+.++|.+.. ...    .
T Consensus        23 ~~l~i~~l~~~y~~---~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~-~G~I~~~g~~i~-~~~----~   93 (263)
T 2olj_A           23 QMIDVHQLKKSFGS---LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFD-EGEIIIDGINLK-AKD----T   93 (263)
T ss_dssp             CSEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS-EEEEEETTEESS-STT----C
T ss_pred             heEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCC-CcEEEECCEECC-Ccc----c
Confidence            47999999999965   57999999999999999999999999999999999999886 899999886542 000    0


Q ss_pred             CcccccccccccccccCc-ccccccccHHHH-hhc---CCCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHH
Q 022663           92 DLSYLGGSWSKTVGSAGE-IPLQGDFSAEHM-IFG---VEGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQ  160 (294)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~---~~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~  160 (294)
                      ..    ..++..++++++ ..+++.++..++ .++   .....    .+++.++++.+++.  .++++.+|||||||||+
T Consensus        94 ~~----~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~  169 (263)
T 2olj_A           94 NL----NKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVA  169 (263)
T ss_dssp             CH----HHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHH
T ss_pred             cH----HHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHH
Confidence            00    011223445444 334455555443 332   11221    23456788999985  57889999999999999


Q ss_pred             HHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHH
Q 022663          161 ICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDE  240 (294)
Q Consensus       161 lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  240 (294)
                      |||||+.+|++|||||||+|||+.++..++++|.+++++ |+|||+||||++++..+||+|++|++|+++..|+++++.+
T Consensus       170 lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  248 (263)
T 2olj_A          170 IARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANE-GMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFD  248 (263)
T ss_dssp             HHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred             HHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence            999999999999999999999999999999999998765 9999999999999999999999999999999999998865


Q ss_pred             h
Q 022663          241 L  241 (294)
Q Consensus       241 ~  241 (294)
                      .
T Consensus       249 ~  249 (263)
T 2olj_A          249 R  249 (263)
T ss_dssp             S
T ss_pred             C
Confidence            4

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=100.00  E-value=5.5e-52  Score=364.17  Aligned_cols=218  Identities=22%  Similarity=0.309  Sum_probs=167.9

Q ss_pred             cEEEcceEEEcCCCC-CCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663           13 SIKVCGMQFSYEGND-KPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG   91 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~-~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~   91 (294)
                      +|+++||+++|++.. ..++|+||||+|++||+++|+||||||||||+|+|+|++.|+ +|.+.++|.+.......    
T Consensus         1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~-~G~I~~~g~~~~~~~~~----   75 (235)
T 3tif_A            1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT-EGEVYIDNIKTNDLDDD----   75 (235)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS-EEEEEETTEECTTCCHH----
T ss_pred             CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC-ceEEEECCEEcccCCHH----
Confidence            489999999996421 135999999999999999999999999999999999999887 99999988754221100    


Q ss_pred             CcccccccccccccccCc-ccccccccHHHH-hhcC--C---CCc----HHHHHHHHHHcCCC---cccccccCCHHHHH
Q 022663           92 DLSYLGGSWSKTVGSAGE-IPLQGDFSAEHM-IFGV--E---GSD----PVRRERLIELLDID---LQWRMHKVSDGQRR  157 (294)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~--~---~~~----~~~~~~~l~~l~l~---~~~~~~~LSgGqkq  157 (294)
                      .   .....+..++++++ ..+++.++..++ .++.  .   ...    .+++.++++.+++.   .++++.+|||||||
T Consensus        76 ~---~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~Q  152 (235)
T 3tif_A           76 E---LTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQ  152 (235)
T ss_dssp             H---HHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHH
T ss_pred             H---HHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHH
Confidence            0   00001123555554 344555565443 3321  1   111    23345678888874   37889999999999


Q ss_pred             HHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHH
Q 022663          158 RVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAE  237 (294)
Q Consensus       158 Rv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~  237 (294)
                      ||+|||||+.+|++|||||||+|||+.++..++++|.+++++.|+|||+||||++.+ .+||+|++|++|+++..+++++
T Consensus       153 Rv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~-~~~d~i~~l~~G~i~~~~~~~~  231 (235)
T 3tif_A          153 RVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEVEREEKLRG  231 (235)
T ss_dssp             HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHH-TTSSEEEEEETTEEEEEEECC-
T ss_pred             HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHH-HhCCEEEEEECCEEEEEcChhh
Confidence            999999999999999999999999999999999999998766699999999999965 7999999999999999888766


Q ss_pred             HH
Q 022663          238 LD  239 (294)
Q Consensus       238 ~~  239 (294)
                      +.
T Consensus       232 ~~  233 (235)
T 3tif_A          232 FD  233 (235)
T ss_dssp             --
T ss_pred             hc
Confidence            53

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=100.00  E-value=1.6e-51  Score=365.90  Aligned_cols=212  Identities=16%  Similarity=0.246  Sum_probs=171.5

Q ss_pred             cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663           11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS   90 (294)
Q Consensus        11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~   90 (294)
                      +++|+++||+++|++   +++|+||||+|++||+++|+||||||||||+|+|+|++.|+ +|.+.++|.+.......   
T Consensus         5 ~~~l~i~~l~~~y~~---~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~-~G~i~~~g~~~~~~~~~---   77 (257)
T 1g6h_A            5 MEILRTENIVKYFGE---FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD-EGRVYFENKDITNKEPA---   77 (257)
T ss_dssp             CEEEEEEEEEEEETT---EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS-EEEEEETTEECTTCCHH---
T ss_pred             CcEEEEeeeEEEECC---EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEECCEECCCCCHH---
Confidence            357999999999975   57999999999999999999999999999999999999886 89999988654211000   


Q ss_pred             CCcccccccccccccccCc-ccccccccHHHH-hhcCC----C-----------Cc----HHHHHHHHHHcCCC--cccc
Q 022663           91 GDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHM-IFGVE----G-----------SD----PVRRERLIELLDID--LQWR  147 (294)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~----~-----------~~----~~~~~~~l~~l~l~--~~~~  147 (294)
                             ...+..++++++ ..+++.++..++ .++..    .           ..    .+++.++++.+++.  .+++
T Consensus        78 -------~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~  150 (257)
T 1g6h_A           78 -------ELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRK  150 (257)
T ss_dssp             -------HHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSB
T ss_pred             -------HHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCC
Confidence                   001223444444 234445555443 33211    1           11    23456788889985  5789


Q ss_pred             cccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCC
Q 022663          148 MHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDG  227 (294)
Q Consensus       148 ~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G  227 (294)
                      +.+|||||||||+|||||+.+|++|||||||+|||+.++..++++|.+++++ |+|||+||||++++..+||+|++|++|
T Consensus       151 ~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tvi~vtHd~~~~~~~~d~v~~l~~G  229 (257)
T 1g6h_A          151 AGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK-GITFLIIEHRLDIVLNYIDHLYVMFNG  229 (257)
T ss_dssp             GGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCCSTTGGGCSEEEEEETT
T ss_pred             chhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCHHHHHHhCCEEEEEECC
Confidence            9999999999999999999999999999999999999999999999998754 899999999999999999999999999


Q ss_pred             eEEecccHHH
Q 022663          228 ELRRAEKLAE  237 (294)
Q Consensus       228 ~i~~~g~~~~  237 (294)
                      +++..|++++
T Consensus       230 ~i~~~g~~~~  239 (257)
T 1g6h_A          230 QIIAEGRGEE  239 (257)
T ss_dssp             EEEEEEESHH
T ss_pred             EEEEEeCHHH
Confidence            9999998887

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=100.00  E-value=2.5e-51  Score=365.43  Aligned_cols=223  Identities=20%  Similarity=0.227  Sum_probs=174.9

Q ss_pred             ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663           12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG   91 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~   91 (294)
                      ++|+++||+++|++   .++|+||||+|++||+++|+||||||||||+|+|+|++.|+ +|.+.++|.+.......  ..
T Consensus         5 ~~l~i~~l~~~y~~---~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~-~G~i~~~g~~~~~~~~~--~~   78 (262)
T 1b0u_A            5 NKLHVIDLHKRYGG---HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS-EGAIIVNGQNINLVRDK--DG   78 (262)
T ss_dssp             CCEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS-EEEEEETTEECCEEECT--TS
T ss_pred             ceEEEeeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CcEEEECCEEccccccc--cc
Confidence            47999999999965   57999999999999999999999999999999999999886 89999988654210000  00


Q ss_pred             ---Cccc-ccccccccccccCc-ccccccccHHHH-hhc---CCCCc----HHHHHHHHHHcCCC---cccccccCCHHH
Q 022663           92 ---DLSY-LGGSWSKTVGSAGE-IPLQGDFSAEHM-IFG---VEGSD----PVRRERLIELLDID---LQWRMHKVSDGQ  155 (294)
Q Consensus        92 ---~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~---~~~~~----~~~~~~~l~~l~l~---~~~~~~~LSgGq  155 (294)
                         .... ....++..++++++ ..+++.++..++ .++   .....    .+++.++++.+++.   .++++.+|||||
T Consensus        79 ~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq  158 (262)
T 1b0u_A           79 QLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQ  158 (262)
T ss_dssp             SEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHH
T ss_pred             cccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHH
Confidence               0000 00011233455544 334555555443 331   11221    23456788999984   478899999999


Q ss_pred             HHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccH
Q 022663          156 RRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKL  235 (294)
Q Consensus       156 kqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~  235 (294)
                      ||||+|||||+.+|++|||||||+|||+.++..++++|.+++++ |.|||+||||++++..+||+|++|++|+++..|++
T Consensus       159 ~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~  237 (262)
T 1b0u_A          159 QQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDP  237 (262)
T ss_dssp             HHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-TCCEEEECSCHHHHHHHCSEEEEEETTEEEEEECH
T ss_pred             HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence            99999999999999999999999999999999999999998765 89999999999999999999999999999999999


Q ss_pred             HHHHHh
Q 022663          236 AELDEL  241 (294)
Q Consensus       236 ~~~~~~  241 (294)
                      +++...
T Consensus       238 ~~~~~~  243 (262)
T 1b0u_A          238 EQVFGN  243 (262)
T ss_dssp             HHHHHS
T ss_pred             HHHHhC
Confidence            988754

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=100.00  E-value=6e-51  Score=376.89  Aligned_cols=213  Identities=25%  Similarity=0.249  Sum_probs=178.8

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      +|+++||+++|++   ..+|+|+||+|++||+++|+||||||||||||+|+|++.|+ +|.+.++|.+.....       
T Consensus         3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~-~G~I~i~g~~i~~~~-------   71 (359)
T 2yyz_A            3 SIRVVNLKKYFGK---VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPT-SGEIYFDDVLVNDIP-------   71 (359)
T ss_dssp             CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCS-EEEEEETTEECTTSC-------
T ss_pred             EEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCC-ccEEEECCEECCCCC-------
Confidence            6999999999965   57999999999999999999999999999999999999887 899999887542110       


Q ss_pred             cccccccccccccccCc-ccccccccHHHH-hhcCC--CCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHHH
Q 022663           93 LSYLGGSWSKTVGSAGE-IPLQGDFSAEHM-IFGVE--GSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQIC  162 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~--~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lA  162 (294)
                            ...+.++++++ ..+++.++..++ .++..  ...    .+++.++++.+++.  .++++.+|||||||||+||
T Consensus        72 ------~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalA  145 (359)
T 2yyz_A           72 ------PKYREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALA  145 (359)
T ss_dssp             ------GGGTTEEEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHH
T ss_pred             ------hhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHH
Confidence                  01223455544 345666666544 44432  111    23567889999985  5889999999999999999


Q ss_pred             HHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHHhh
Q 022663          163 MGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDELR  242 (294)
Q Consensus       163 raL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~  242 (294)
                      |||+.+|++|||||||++||+..+..+++.|+++.++.|.|+|+||||++++..+||+|++|++|+++..|+++++.+..
T Consensus       146 rAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p  225 (359)
T 2yyz_A          146 RALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSP  225 (359)
T ss_dssp             HHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred             HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCc
Confidence            99999999999999999999999999999999987767999999999999999999999999999999999999987654

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=100.00  E-value=4.8e-51  Score=376.73  Aligned_cols=215  Identities=23%  Similarity=0.320  Sum_probs=178.8

Q ss_pred             cccEEEcceEEEc-CCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccc
Q 022663           11 LNSIKVCGMQFSY-EGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVC   89 (294)
Q Consensus        11 ~~~l~~~~ls~~y-~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~   89 (294)
                      .++|+++||+++| ++   .++|+|+||+|++||+++|+||||||||||||+|+|++.|+ +|.+.++|.+.....    
T Consensus        12 ~~~l~~~~l~~~y~g~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~-~G~I~i~g~~i~~~~----   83 (355)
T 1z47_A           12 SMTIEFVGVEKIYPGG---ARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT-KGDVWIGGKRVTDLP----   83 (355)
T ss_dssp             CEEEEEEEEEECCTTS---TTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS-EEEEEETTEECTTCC----
T ss_pred             CceEEEEEEEEEEcCC---CEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC-ccEEEECCEECCcCC----
Confidence            4689999999999 64   57999999999999999999999999999999999999887 899999887542110    


Q ss_pred             cCCcccccccccccccccCc-ccccccccHHHH-hhcC--CCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHH
Q 022663           90 SGDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHM-IFGV--EGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRV  159 (294)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv  159 (294)
                               ..++.++++++ ..+++.++..++ .++.  ....    .+++.++++.+++.  .++++.+|||||||||
T Consensus        84 ---------~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRv  154 (355)
T 1z47_A           84 ---------PQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRV  154 (355)
T ss_dssp             ---------GGGSSEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHH
T ss_pred             ---------hhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHH
Confidence                     01223444444 345566665443 3332  1211    23567788999985  5889999999999999


Q ss_pred             HHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHH
Q 022663          160 QICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELD  239 (294)
Q Consensus       160 ~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  239 (294)
                      +|||||+.+|++|||||||++||+..+.++++.|+++.++.|.|+|+||||++++..+||+|++|++|+++..|+++++.
T Consensus       155 alArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~  234 (355)
T 1z47_A          155 ALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVY  234 (355)
T ss_dssp             HHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred             HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence            99999999999999999999999999999999999987777999999999999999999999999999999999999987


Q ss_pred             Hhh
Q 022663          240 ELR  242 (294)
Q Consensus       240 ~~~  242 (294)
                      +.+
T Consensus       235 ~~p  237 (355)
T 1z47_A          235 EKP  237 (355)
T ss_dssp             HSC
T ss_pred             hCc
Confidence            653

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=100.00  E-value=6.2e-51  Score=376.59  Aligned_cols=218  Identities=22%  Similarity=0.290  Sum_probs=179.1

Q ss_pred             cEEEcceEEEcCCCCCCC--ceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663           13 SIKVCGMQFSYEGNDKPP--LFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS   90 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~--iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~   90 (294)
                      +|+++||+++|++   .+  +|+|+||+|++||+++|+||||||||||||+|+|++.|+ +|.+.++|.+......    
T Consensus         3 ~l~i~~l~~~y~~---~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~-~G~I~i~g~~i~~~~~----   74 (353)
T 1oxx_K            3 RIIVKNVSKVFKK---GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS-TGELYFDDRLVASNGK----   74 (353)
T ss_dssp             CEEEEEEEEEEGG---GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCS-EEEEEETTEEEEETTE----
T ss_pred             EEEEEeEEEEECC---EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC-ceEEEECCEECccccc----
Confidence            6999999999975   56  999999999999999999999999999999999999887 8999998875422000    


Q ss_pred             CCcccccccccccccccCc-ccccccccHHHH-hhcCC--CCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHH
Q 022663           91 GDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHM-IFGVE--GSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQ  160 (294)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~--~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~  160 (294)
                        .. . ...++.++++++ ..+++.++..++ .++..  ...    .+++.++++.+++.  .++++.+|||||||||+
T Consensus        75 --~~-~-~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRva  150 (353)
T 1oxx_K           75 --LI-V-PPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVA  150 (353)
T ss_dssp             --ES-S-CGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHH
T ss_pred             --cc-C-ChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHH
Confidence              00 0 011234555544 345666666544 44432  112    23467788999985  58899999999999999


Q ss_pred             HHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHH
Q 022663          161 ICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDE  240 (294)
Q Consensus       161 lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  240 (294)
                      |||||+.+|++|||||||++||+..+.++++.|+++.++.|.|+|+||||++++..+||+|++|++|+++..|+++++.+
T Consensus       151 lAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~  230 (353)
T 1oxx_K          151 LARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYD  230 (353)
T ss_dssp             HHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred             HHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            99999999999999999999999999999999999877679999999999999999999999999999999999999876


Q ss_pred             hh
Q 022663          241 LR  242 (294)
Q Consensus       241 ~~  242 (294)
                      .+
T Consensus       231 ~p  232 (353)
T 1oxx_K          231 NP  232 (353)
T ss_dssp             SC
T ss_pred             Cc
Confidence            54

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=100.00  E-value=7.5e-51  Score=358.05  Aligned_cols=214  Identities=18%  Similarity=0.226  Sum_probs=171.9

Q ss_pred             ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663           12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG   91 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~   91 (294)
                      ++|+++||+++|++   +++|+|+||+|++||+++|+||||||||||+|+|+|++.|+ +|.+.++|.+.......    
T Consensus         5 ~~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~~~~----   76 (240)
T 1ji0_A            5 IVLEVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ-KGKIIFNGQDITNKPAH----   76 (240)
T ss_dssp             EEEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS-EEEEEETTEECTTCCHH----
T ss_pred             ceEEEEeEEEEECC---eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEECCEECCCCCHH----
Confidence            47999999999975   57999999999999999999999999999999999999886 89999988654211000    


Q ss_pred             CcccccccccccccccCc-ccccccccHHHH-hhcC-CC--Cc--HHHHHHHHHHcC-CC--cccccccCCHHHHHHHHH
Q 022663           92 DLSYLGGSWSKTVGSAGE-IPLQGDFSAEHM-IFGV-EG--SD--PVRRERLIELLD-ID--LQWRMHKVSDGQRRRVQI  161 (294)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~-~~--~~--~~~~~~~l~~l~-l~--~~~~~~~LSgGqkqRv~l  161 (294)
                            ...+..++++++ ..++..++..++ .++. ..  ..  .+..+++++.++ +.  .++++.+|||||||||+|
T Consensus        77 ------~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~l  150 (240)
T 1ji0_A           77 ------VINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAI  150 (240)
T ss_dssp             ------HHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHH
T ss_pred             ------HHHhCCEEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHH
Confidence                  001112444444 334455565443 3332 11  11  234566778884 63  578899999999999999


Q ss_pred             HHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHH
Q 022663          162 CMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDE  240 (294)
Q Consensus       162 AraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  240 (294)
                      ||||+.+|++|||||||+|||+.++..++++|.++.+ .|+|||+||||++++..+||+|++|++|+++..|+++++.+
T Consensus       151 AraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  228 (240)
T 1ji0_A          151 GRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ-EGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD  228 (240)
T ss_dssp             HHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHT
T ss_pred             HHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhc
Confidence            9999999999999999999999999999999999865 58999999999999999999999999999999999888754

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=100.00  E-value=6.3e-51  Score=377.13  Aligned_cols=213  Identities=25%  Similarity=0.296  Sum_probs=177.8

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      +|+++||+++|++   .++|+|+||+|++||+++|+||||||||||||+|+|++.|+ +|.+.++|.+.....       
T Consensus         3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~-~G~I~i~g~~i~~~~-------   71 (362)
T 2it1_A            3 EIKLENIVKKFGN---FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPT-SGKIYFDEKDVTELP-------   71 (362)
T ss_dssp             CEEEEEEEEESSS---SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS-EEEEEETTEECTTSC-------
T ss_pred             EEEEEeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC-ceEEEECCEECCcCC-------
Confidence            6999999999965   57999999999999999999999999999999999999887 899999887542210       


Q ss_pred             cccccccccccccccCc-ccccccccHHHH-hhcC--CCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHHH
Q 022663           93 LSYLGGSWSKTVGSAGE-IPLQGDFSAEHM-IFGV--EGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQIC  162 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lA  162 (294)
                            ...+.++++++ ..+++.++..++ .++.  ....    .+++.++++.+++.  .++++.+|||||||||+||
T Consensus        72 ------~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalA  145 (362)
T 2it1_A           72 ------PKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIA  145 (362)
T ss_dssp             ------GGGTTEEEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHH
T ss_pred             ------HhHCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHH
Confidence                  01123444444 345666665443 3432  1111    23467788999985  5889999999999999999


Q ss_pred             HHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHHhh
Q 022663          163 MGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDELR  242 (294)
Q Consensus       163 raL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~  242 (294)
                      |||+.+|++|||||||++||+..+..+++.|+++.++.|.|+|+||||++++..+||+|++|++|+++..|+++++...+
T Consensus       146 rAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~p  225 (362)
T 2it1_A          146 RALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKP  225 (362)
T ss_dssp             HHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred             HHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence            99999999999999999999999999999999987767999999999999999999999999999999999999987654

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=100.00  E-value=3.2e-51  Score=356.80  Aligned_cols=209  Identities=22%  Similarity=0.270  Sum_probs=166.4

Q ss_pred             ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663           12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG   91 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~   91 (294)
                      ++|+++||+++|++   +++|+|+||+|++||+++|+||||||||||+|+|+|++.|+ +|.+.++|.+.......    
T Consensus         3 ~~l~~~~l~~~y~~---~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~~~~----   74 (224)
T 2pcj_A            3 EILRAENIKKVIRG---YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPT-EGKVFLEGKEVDYTNEK----   74 (224)
T ss_dssp             EEEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCS-EEEEEETTEECCSSCHH----
T ss_pred             cEEEEEeEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC-ceEEEECCEECCCCCHH----
Confidence            47999999999975   57999999999999999999999999999999999999886 89999988654211000    


Q ss_pred             Ccccccccc-cccccccCc-ccccccccHHHHh-hcC--CCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHH
Q 022663           92 DLSYLGGSW-SKTVGSAGE-IPLQGDFSAEHMI-FGV--EGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQ  160 (294)
Q Consensus        92 ~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~-~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~  160 (294)
                      ..    ..+ ...++++++ ..+++.++..+++ ++.  ....    .+++.++++.+++.  .++++.+|||||||||+
T Consensus        75 ~~----~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~  150 (224)
T 2pcj_A           75 EL----SLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVA  150 (224)
T ss_dssp             HH----HHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHH
T ss_pred             HH----HHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHH
Confidence            00    001 123444444 3344555554432 221  1111    23456788889885  57899999999999999


Q ss_pred             HHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEeccc
Q 022663          161 ICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEK  234 (294)
Q Consensus       161 lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~  234 (294)
                      |||||+.+|++|||||||+|||+.++..++++|.+++++ |.|||+||||++++ .+||++++|++|+++..|+
T Consensus       151 laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~~~-~~~d~v~~l~~G~i~~~g~  222 (224)
T 2pcj_A          151 IARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEG-GTSIVMVTHERELA-ELTHRTLEMKDGKVVGEIT  222 (224)
T ss_dssp             HHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCHHHH-TTSSEEEEEETTEEEEEEE
T ss_pred             HHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEcCCHHHH-HhCCEEEEEECCEEEEEee
Confidence            999999999999999999999999999999999998765 99999999999988 7999999999999998775

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=100.00  E-value=2.8e-50  Score=354.22  Aligned_cols=210  Identities=21%  Similarity=0.283  Sum_probs=171.9

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      ||+++||+++|++     +|+|+||+|++ |+++|+||||||||||+|+|+|++.|+ +|.+.++|.+.....       
T Consensus         1 ml~~~~l~~~y~~-----~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~~-------   66 (240)
T 2onk_A            1 MFLKVRAEKRLGN-----FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPD-RGEVRLNGADITPLP-------   66 (240)
T ss_dssp             CCEEEEEEEEETT-----EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCS-EEEEEETTEECTTSC-------
T ss_pred             CEEEEEEEEEeCC-----EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCEECCcCc-------
Confidence            4889999999953     59999999999 999999999999999999999999886 899999886542100       


Q ss_pred             cccccccccccccccCc-ccccccccHHHHh-hcCCCC----cHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHH
Q 022663           93 LSYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-FGVEGS----DPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMG  164 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~----~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAra  164 (294)
                            ..+..++++++ ..+++.++..+++ ++....    ..+++.++++.+++.  .++++.+|||||||||+||||
T Consensus        67 ------~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAra  140 (240)
T 2onk_A           67 ------PERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARA  140 (240)
T ss_dssp             ------TTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHH
T ss_pred             ------hhhCcEEEEcCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHH
Confidence                  01223444444 3345555655443 332211    123456788888885  578899999999999999999


Q ss_pred             HccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHHhh
Q 022663          165 LLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDELR  242 (294)
Q Consensus       165 L~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~  242 (294)
                      |+.+|++|||||||+|||+.++..++++|.+++++.|+|||+||||++++..+||++++|++|+++..|+++++.+..
T Consensus       141 l~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~  218 (240)
T 2onk_A          141 LVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAK  218 (240)
T ss_dssp             HTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred             HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence            999999999999999999999999999999987666899999999999999999999999999999999999886543

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=100.00  E-value=1.5e-50  Score=375.86  Aligned_cols=215  Identities=22%  Similarity=0.244  Sum_probs=176.6

Q ss_pred             cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663           11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS   90 (294)
Q Consensus        11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~   90 (294)
                      |.+|+++||+++|++   ..+|+|+||+|++||+++|+||||||||||||+|+|++.|+ +|.+.++|.+.....     
T Consensus         9 M~~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~-~G~I~i~g~~i~~~~-----   79 (372)
T 1v43_A            9 MVEVKLENLTKRFGN---FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT-EGRIYFGDRDVTYLP-----   79 (372)
T ss_dssp             CCCEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS-EEEEEETTEECTTSC-----
T ss_pred             eeeEEEEEEEEEECC---EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC-ceEEEECCEECCCCC-----
Confidence            346999999999965   57999999999999999999999999999999999999887 899999887542110     


Q ss_pred             CCcccccccccccccccCc-ccccccccHHHH-hhcCC--CCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHH
Q 022663           91 GDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHM-IFGVE--GSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQ  160 (294)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~--~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~  160 (294)
                              ...+.++++++ ..+++.++..++ .++..  ...    .+++.++++.+++.  .++++.+|||||||||+
T Consensus        80 --------~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRva  151 (372)
T 1v43_A           80 --------PKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVA  151 (372)
T ss_dssp             --------GGGGTEEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHH
T ss_pred             --------hhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHH
Confidence                    01123444444 345666666544 44432  112    23467788999985  58899999999999999


Q ss_pred             HHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHH
Q 022663          161 ICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDE  240 (294)
Q Consensus       161 lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  240 (294)
                      |||||+.+|++|||||||++||+..+.++++.|+++.++.|.|+|+||||++++..+||+|++|++|+++..|+++++..
T Consensus       152 lArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~  231 (372)
T 1v43_A          152 VARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYL  231 (372)
T ss_dssp             HHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred             HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence            99999999999999999999999999999999999877679999999999999999999999999999999999999876


Q ss_pred             hh
Q 022663          241 LR  242 (294)
Q Consensus       241 ~~  242 (294)
                      ..
T Consensus       232 ~p  233 (372)
T 1v43_A          232 RP  233 (372)
T ss_dssp             CC
T ss_pred             Cc
Confidence            53

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=100.00  E-value=1.1e-50  Score=377.27  Aligned_cols=219  Identities=21%  Similarity=0.288  Sum_probs=178.8

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      +|+++||+++|++   .++|+|+||+|++||+++|+||||||||||||+|+|++.|+ +|.+.++|.+......     .
T Consensus         3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~-~G~I~i~g~~~~~~~~-----~   73 (372)
T 1g29_1            3 GVRLVDVWKVFGE---VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS-RGQIYIGDKLVADPEK-----G   73 (372)
T ss_dssp             EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS-EEEEEETTEEEEEGGG-----T
T ss_pred             EEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCC-ccEEEECCEECccccc-----c
Confidence            6999999999965   57999999999999999999999999999999999999887 8999998876422000     0


Q ss_pred             cccccccccccccccCc-ccccccccHHHH-hhcC--CCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHHH
Q 022663           93 LSYLGGSWSKTVGSAGE-IPLQGDFSAEHM-IFGV--EGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQIC  162 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lA  162 (294)
                      .. .. ...+.++++++ ..+++.++..++ .++.  ....    .+++.++++.+++.  .++++.+|||||||||+||
T Consensus        74 ~~-~~-~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalA  151 (372)
T 1g29_1           74 IF-VP-PKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALG  151 (372)
T ss_dssp             EE-CC-GGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHH
T ss_pred             cc-CC-HhHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHH
Confidence            00 00 01234555554 345666666544 3432  1211    23467788999985  5889999999999999999


Q ss_pred             HHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHHhh
Q 022663          163 MGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDELR  242 (294)
Q Consensus       163 raL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~  242 (294)
                      |||+.+|++|||||||++||+..+..+++.|+++.++.|.|+|+||||++++..+||+|++|++|+++..|+++++....
T Consensus       152 rAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p  231 (372)
T 1g29_1          152 RAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKP  231 (372)
T ss_dssp             HHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred             HHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHHHhCc
Confidence            99999999999999999999999999999999987767999999999999999999999999999999999999987653

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=100.00  E-value=2e-50  Score=372.21  Aligned_cols=212  Identities=21%  Similarity=0.277  Sum_probs=177.7

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      ||+++||+++|++   + +|+|+||+|++||+++|+||||||||||||+|+|++.|+ +|.+.++|.+.....       
T Consensus         1 ml~~~~l~~~y~~---~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~-~G~I~~~g~~i~~~~-------   68 (348)
T 3d31_A            1 MIEIESLSRKWKN---F-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD-SGRILLDGKDVTDLS-------   68 (348)
T ss_dssp             CEEEEEEEEECSS---C-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCS-EEEEEETTEECTTSC-------
T ss_pred             CEEEEEEEEEECC---E-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCC-CcEEEECCEECCCCc-------
Confidence            4899999999965   5 999999999999999999999999999999999999887 899999887542100       


Q ss_pred             cccccccccccccccCc-ccccccccHHHH-hhcCC---CCcHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHHH
Q 022663           93 LSYLGGSWSKTVGSAGE-IPLQGDFSAEHM-IFGVE---GSDPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMGL  165 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~---~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL  165 (294)
                            ..++.++++++ ..+++.++..++ .++..   ....+++.++++.+++.  .++++.+|||||||||+|||||
T Consensus        69 ------~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL  142 (348)
T 3d31_A           69 ------PEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARAL  142 (348)
T ss_dssp             ------HHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHT
T ss_pred             ------hhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHH
Confidence                  11233455554 345666665543 33321   11225677889999985  5889999999999999999999


Q ss_pred             ccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHHhh
Q 022663          166 LHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDELR  242 (294)
Q Consensus       166 ~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~  242 (294)
                      +.+|++|||||||++||+..+..+++.|+++.++.|.|+|+||||++++..+||+|++|++|+++..|+++++.+..
T Consensus       143 ~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~p  219 (348)
T 3d31_A          143 VTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKP  219 (348)
T ss_dssp             TSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSC
T ss_pred             HcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence            99999999999999999999999999999987777999999999999999999999999999999999999987654

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=100.00  E-value=9.4e-51  Score=364.66  Aligned_cols=214  Identities=22%  Similarity=0.330  Sum_probs=170.7

Q ss_pred             cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccc--cccccc
Q 022663           11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSF--HDTQLV   88 (294)
Q Consensus        11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~--~~~~~~   88 (294)
                      .++|+++||+++|++   +++|+||||+|++||+++|+||||||||||+|+|+|++.|+ +|.+.++|.+..  ....  
T Consensus        19 ~~~l~~~~l~~~y~~---~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-~G~I~~~g~~~~~~~~~~--   92 (279)
T 2ihy_A           19 HMLIQLDQIGRMKQG---KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT-SGTVNLFGKMPGKVGYSA--   92 (279)
T ss_dssp             CEEEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS-EEEEEETTBCCC---CCH--
T ss_pred             CceEEEEeEEEEECC---EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-CeEEEECCEEcccccCCH--
Confidence            457999999999975   57999999999999999999999999999999999999887 899999887542  1000  


Q ss_pred             ccCCcccccccccccccccCccc---ccccccHHHH-hhcCC-------CCc---HHHHHHHHHHcCCC--cccccccCC
Q 022663           89 CSGDLSYLGGSWSKTVGSAGEIP---LQGDFSAEHM-IFGVE-------GSD---PVRRERLIELLDID--LQWRMHKVS  152 (294)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~-------~~~---~~~~~~~l~~l~l~--~~~~~~~LS  152 (294)
                               ..++..++++++.+   +...++..++ .++..       ...   .+++.++++.+++.  .++++.+||
T Consensus        93 ---------~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS  163 (279)
T 2ihy_A           93 ---------ETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLS  163 (279)
T ss_dssp             ---------HHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSC
T ss_pred             ---------HHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCC
Confidence                     01112233333311   1122354443 33211       011   23456788889985  578999999


Q ss_pred             HHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEE--EEEeCChhHHHhhhceEEEeeCCeEE
Q 022663          153 DGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATI--VYATHIFDGLETWATHLAYIQDGELR  230 (294)
Q Consensus       153 gGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tv--iivsHd~~~~~~~~d~v~~l~~G~i~  230 (294)
                      |||||||+|||||+.+|++|||||||+|||+.++..++++|.++.++ |+||  |+||||++++..+||+|++|++|+++
T Consensus       164 gGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~-g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~  242 (279)
T 2ihy_A          164 TGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDS-YPTLAMIYVTHFIEEITANFSKILLLKDGQSI  242 (279)
T ss_dssp             HHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHH-CTTCEEEEEESCGGGCCTTCCEEEEEETTEEE
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHC-CCEEEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence            99999999999999999999999999999999999999999998765 8999  99999999999999999999999999


Q ss_pred             ecccHHHHHH
Q 022663          231 RAEKLAELDE  240 (294)
Q Consensus       231 ~~g~~~~~~~  240 (294)
                      ..|+++++.+
T Consensus       243 ~~g~~~~~~~  252 (279)
T 2ihy_A          243 QQGAVEDILT  252 (279)
T ss_dssp             EEEEHHHHCS
T ss_pred             EECCHHHHhc
Confidence            9999888754

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=100.00  E-value=1.7e-49  Score=354.47  Aligned_cols=214  Identities=22%  Similarity=0.258  Sum_probs=172.7

Q ss_pred             cEEEcceEEEcCCCCC--CCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663           13 SIKVCGMQFSYEGNDK--PPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS   90 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~--~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~   90 (294)
                      +|+++||+++|+....  +++|+|+||+|++||+++|+||||||||||+|+|+|++.|+ +|.+.++|.+....      
T Consensus         2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~-~G~I~~~g~~~~~~------   74 (266)
T 2yz2_A            2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT-SGDVLYDGERKKGY------   74 (266)
T ss_dssp             CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS-EEEEEETTEECCHH------
T ss_pred             EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-CcEEEECCEECchH------
Confidence            6999999999962111  36999999999999999999999999999999999998886 89999988653210      


Q ss_pred             CCcccccccccccccccCccc--ccccccHHH-HhhcCC----C-CcHHHHHHHHHHcCCC----cccccccCCHHHHHH
Q 022663           91 GDLSYLGGSWSKTVGSAGEIP--LQGDFSAEH-MIFGVE----G-SDPVRRERLIELLDID----LQWRMHKVSDGQRRR  158 (294)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~----~-~~~~~~~~~l~~l~l~----~~~~~~~LSgGqkqR  158 (294)
                              .++..++++++.+  .+...+..+ +.++..    . ...+++.++++.+++.    .++++.+||||||||
T Consensus        75 --------~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qR  146 (266)
T 2yz2_A           75 --------EIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRR  146 (266)
T ss_dssp             --------HHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHH
T ss_pred             --------HhhhhEEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHH
Confidence                    1122234443321  223345443 333321    1 1234567889999986    478899999999999


Q ss_pred             HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663          159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL  238 (294)
Q Consensus       159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~  238 (294)
                      |+|||||+.+|++|||||||+|||+.++..++++|.++.++ |.|||+||||++++..+||++++|++|+++..|+++++
T Consensus       147 v~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~  225 (266)
T 2yz2_A          147 VAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL-GKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEF  225 (266)
T ss_dssp             HHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHH
T ss_pred             HHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            99999999999999999999999999999999999998765 89999999999999999999999999999999999888


Q ss_pred             HHhh
Q 022663          239 DELR  242 (294)
Q Consensus       239 ~~~~  242 (294)
                      ....
T Consensus       226 ~~~~  229 (266)
T 2yz2_A          226 LEKY  229 (266)
T ss_dssp             HHHS
T ss_pred             hcCc
Confidence            6543

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=100.00  E-value=1.7e-49  Score=351.87  Aligned_cols=200  Identities=22%  Similarity=0.342  Sum_probs=163.0

Q ss_pred             cEEEcceEEEcC-CCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663           13 SIKVCGMQFSYE-GNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG   91 (294)
Q Consensus        13 ~l~~~~ls~~y~-~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~   91 (294)
                      +|+++||+++|+ +   +++|+|+||+|++||+++|+||||||||||+|+|+|++.|+ +|.+.+.             .
T Consensus         4 ~l~i~~l~~~y~~~---~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~-~G~I~~~-------------~   66 (253)
T 2nq2_C            4 ALSVENLGFYYQAE---NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPI-QGKIEVY-------------Q   66 (253)
T ss_dssp             EEEEEEEEEEETTT---TEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCS-EEEEEEC-------------S
T ss_pred             eEEEeeEEEEeCCC---CeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEEe-------------c
Confidence            799999999997 4   57999999999999999999999999999999999998886 7777521             1


Q ss_pred             CcccccccccccccccCcccccccccHHH-HhhcCC---C-----C--cHHHHHHHHHHcCCC--cccccccCCHHHHHH
Q 022663           92 DLSYLGGSWSKTVGSAGEIPLQGDFSAEH-MIFGVE---G-----S--DPVRRERLIELLDID--LQWRMHKVSDGQRRR  158 (294)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~-----~--~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqR  158 (294)
                      .+.++++.          ..++..++..+ +.++..   .     .  ..+++.++++.+++.  .++++.+||||||||
T Consensus        67 ~i~~v~q~----------~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qr  136 (253)
T 2nq2_C           67 SIGFVPQF----------FSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQL  136 (253)
T ss_dssp             CEEEECSC----------CCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHH
T ss_pred             cEEEEcCC----------CccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHH
Confidence            23333221          12223344433 323210   0     1  123457788889985  578899999999999


Q ss_pred             HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663          159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL  238 (294)
Q Consensus       159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~  238 (294)
                      |+|||||+.+|++|||||||+|||+.++..++++|.++.++.|.|||+||||++++..+||++++|++|+ +..|+++++
T Consensus       137 v~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~  215 (253)
T 2nq2_C          137 ILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNI  215 (253)
T ss_dssp             HHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHH
T ss_pred             HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHH
Confidence            9999999999999999999999999999999999999876558999999999999999999999999999 889998887


Q ss_pred             HH
Q 022663          239 DE  240 (294)
Q Consensus       239 ~~  240 (294)
                      ..
T Consensus       216 ~~  217 (253)
T 2nq2_C          216 LT  217 (253)
T ss_dssp             CC
T ss_pred             hC
Confidence            53

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=100.00  E-value=3.1e-49  Score=353.50  Aligned_cols=216  Identities=21%  Similarity=0.303  Sum_probs=167.7

Q ss_pred             ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663           12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG   91 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~   91 (294)
                      .+|+++||+++|++...+++|++|||+|++||+++|+||||||||||+|+|+|++.|+ +|.+.++|.+......     
T Consensus        15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~-~G~I~~~g~~i~~~~~-----   88 (271)
T 2ixe_A           15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT-GGKVLLDGEPLVQYDH-----   88 (271)
T ss_dssp             CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS-EEEEEETTEEGGGBCH-----
T ss_pred             ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CCEEEECCEEcccCCH-----
Confidence            4799999999996411246999999999999999999999999999999999999886 8999998875421100     


Q ss_pred             CcccccccccccccccCc-ccccccccHHH-HhhcCCCCcH-HH---------HHHHHHHc--CCC--cccccccCCHHH
Q 022663           92 DLSYLGGSWSKTVGSAGE-IPLQGDFSAEH-MIFGVEGSDP-VR---------RERLIELL--DID--LQWRMHKVSDGQ  155 (294)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~-~~---------~~~~l~~l--~l~--~~~~~~~LSgGq  155 (294)
                            ..++..++++++ ..++. .+..+ +.++...... ..         ..++++.+  ++.  .++++.+|||||
T Consensus        89 ------~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq  161 (271)
T 2ixe_A           89 ------HYLHTQVAAVGQEPLLFG-RSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQ  161 (271)
T ss_dssp             ------HHHHHHEEEECSSCCCCS-SBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHH
T ss_pred             ------HHHhccEEEEecCCcccc-ccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHH
Confidence                  012233455544 23333 35544 4343221111 11         12345555  443  467899999999


Q ss_pred             HHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccH
Q 022663          156 RRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKL  235 (294)
Q Consensus       156 kqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~  235 (294)
                      ||||+|||||+.+|++|||||||+|||+.++..++++|.++.++.|+|||+||||++++.. ||+|++|++|+++..|++
T Consensus       162 ~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~-~d~v~~l~~G~i~~~g~~  240 (271)
T 2ixe_A          162 RQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAER-AHHILFLKEGSVCEQGTH  240 (271)
T ss_dssp             HHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTT-CSEEEEEETTEEEEEECH
T ss_pred             HHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHh-CCEEEEEECCEEEEECCH
Confidence            9999999999999999999999999999999999999998765458999999999999875 999999999999999999


Q ss_pred             HHHHHh
Q 022663          236 AELDEL  241 (294)
Q Consensus       236 ~~~~~~  241 (294)
                      +++...
T Consensus       241 ~~l~~~  246 (271)
T 2ixe_A          241 LQLMER  246 (271)
T ss_dssp             HHHHHH
T ss_pred             HHHHhC
Confidence            888654

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=100.00  E-value=7.1e-49  Score=346.80  Aligned_cols=212  Identities=22%  Similarity=0.264  Sum_probs=166.1

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      -|+++||+++|++. ++++|+|+||+|++||+++|+||||||||||+|+|+|++.|+ +|.+.++|.+......      
T Consensus         7 ~~~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-~G~I~i~g~~~~~~~~------   78 (247)
T 2ff7_A            7 DITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE-NGQVLIDGHDLALADP------   78 (247)
T ss_dssp             EEEEEEEEEESSTT-SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS-EEEEEETTEETTTSCH------
T ss_pred             ceeEEEEEEEeCCC-CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CcEEEECCEEhhhCCH------
Confidence            58999999999311 257999999999999999999999999999999999999887 8999998865421100      


Q ss_pred             cccccccccccccccCc-ccccccccHHHH-hhcCCCCcHHHHHHHHHHcCCC-------------cccccccCCHHHHH
Q 022663           93 LSYLGGSWSKTVGSAGE-IPLQGDFSAEHM-IFGVEGSDPVRRERLIELLDID-------------LQWRMHKVSDGQRR  157 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~-------------~~~~~~~LSgGqkq  157 (294)
                           ..++..++++++ ..++. .+..++ .++......+++.++++.+++.             .++++.+|||||||
T Consensus        79 -----~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~q  152 (247)
T 2ff7_A           79 -----NWLRRQVGVVLQDNVLLN-RSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQ  152 (247)
T ss_dssp             -----HHHHHHEEEECSSCCCTT-SBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHH
T ss_pred             -----HHHHhcEEEEeCCCcccc-ccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHH
Confidence                 012233455544 23333 355444 3432223344455666666652             23456899999999


Q ss_pred             HHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHH
Q 022663          158 RVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAE  237 (294)
Q Consensus       158 Rv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~  237 (294)
                      ||+|||||+.+|++|||||||++||+.++..++++|.++ + .|+|||+||||++.+. .||+|++|++|+++..|++++
T Consensus       153 Rv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~-~-~g~tviivtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~  229 (247)
T 2ff7_A          153 RIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKI-C-KGRTVIIIAHRLSTVK-NADRIIVMEKGKIVEQGKHKE  229 (247)
T ss_dssp             HHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHH-H-TTSEEEEECSSGGGGT-TSSEEEEEETTEEEEEECHHH
T ss_pred             HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-c-CCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEECCHHH
Confidence            999999999999999999999999999999999999988 3 3899999999999886 499999999999999999998


Q ss_pred             HHHh
Q 022663          238 LDEL  241 (294)
Q Consensus       238 ~~~~  241 (294)
                      +...
T Consensus       230 l~~~  233 (247)
T 2ff7_A          230 LLSE  233 (247)
T ss_dssp             HHTS
T ss_pred             HHhC
Confidence            8654

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=100.00  E-value=9e-49  Score=355.41  Aligned_cols=213  Identities=23%  Similarity=0.317  Sum_probs=169.7

Q ss_pred             ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663           12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG   91 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~   91 (294)
                      ..|+++||+|+|++  ..++|+||||+|++||+++|+||||||||||+++|+|++.|+ +|.|.++|.+......     
T Consensus        52 ~~i~~~~vs~~y~~--~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~-~G~I~i~G~~i~~~~~-----  123 (306)
T 3nh6_A           52 GRIEFENVHFSYAD--GRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDIS-SGCIRIDGQDISQVTQ-----  123 (306)
T ss_dssp             CCEEEEEEEEESST--TCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCS-EEEEEETTEETTSBCH-----
T ss_pred             CeEEEEEEEEEcCC--CCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC-CcEEEECCEEcccCCH-----
Confidence            35999999999964  257999999999999999999999999999999999999887 9999999876432110     


Q ss_pred             CcccccccccccccccCcc-cccccccHHHHhhcCCCCcHHHHHHHHHHcCCC-------------cccccccCCHHHHH
Q 022663           92 DLSYLGGSWSKTVGSAGEI-PLQGDFSAEHMIFGVEGSDPVRRERLIELLDID-------------LQWRMHKVSDGQRR  157 (294)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------------~~~~~~~LSgGqkq  157 (294)
                            ..++..++++++. .++.....+++.++......+...++++.+++.             .++++.+|||||||
T Consensus       124 ------~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQ  197 (306)
T 3nh6_A          124 ------ASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQ  197 (306)
T ss_dssp             ------HHHHHTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHH
T ss_pred             ------HHHhcceEEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHH
Confidence                  1223445555553 334332344555554333344444555544431             24566799999999


Q ss_pred             HHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHH
Q 022663          158 RVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAE  237 (294)
Q Consensus       158 Rv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~  237 (294)
                      ||+|||||+.+|+||||||||++||+.++..+++.|.++.  .++|+|+||||++.+.. ||+|++|++|+|++.|++++
T Consensus       198 RvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~--~~~Tvi~itH~l~~~~~-aD~i~vl~~G~iv~~G~~~e  274 (306)
T 3nh6_A          198 RVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVC--ANRTTIVVAHRLSTVVN-ADQILVIKDGCIVERGRHEA  274 (306)
T ss_dssp             HHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHH--TTSEEEEECCSHHHHHT-CSEEEEEETTEEEEEECHHH
T ss_pred             HHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc--CCCEEEEEEcChHHHHc-CCEEEEEECCEEEEECCHHH
Confidence            9999999999999999999999999999999999999875  37899999999999986 99999999999999999999


Q ss_pred             HHHh
Q 022663          238 LDEL  241 (294)
Q Consensus       238 ~~~~  241 (294)
                      +.+.
T Consensus       275 l~~~  278 (306)
T 3nh6_A          275 LLSR  278 (306)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            8764

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=100.00  E-value=1.2e-48  Score=344.68  Aligned_cols=211  Identities=19%  Similarity=0.289  Sum_probs=166.1

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      ||+++||+++|++  ++++|+|+||+|++||+++|+||||||||||+|+|+|++.|+ +|.+.++|.+......      
T Consensus         1 ml~~~~l~~~y~~--~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~~~------   71 (243)
T 1mv5_A            1 MLSARHVDFAYDD--SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT-AGEITIDGQPIDNISL------   71 (243)
T ss_dssp             CEEEEEEEECSSS--SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCS-BSCEEETTEESTTTSC------
T ss_pred             CEEEEEEEEEeCC--CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CcEEEECCEEhhhCCH------
Confidence            4899999999942  257999999999999999999999999999999999999886 8999998865421110      


Q ss_pred             cccccccccccccccCcc-cccccccHHHH-hhcC-CCCcHHHHHHHHHHcCCC--c-----------ccccccCCHHHH
Q 022663           93 LSYLGGSWSKTVGSAGEI-PLQGDFSAEHM-IFGV-EGSDPVRRERLIELLDID--L-----------QWRMHKVSDGQR  156 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~-~~~~~~~~~~~l~~l~l~--~-----------~~~~~~LSgGqk  156 (294)
                           ..++..++++++. .++. .+..++ .++. .....+...++++.+++.  .           ++++.+||||||
T Consensus        72 -----~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~  145 (243)
T 1mv5_A           72 -----ENWRSQIGFVSQDSAIMA-GTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQR  145 (243)
T ss_dssp             -----SCCTTTCCEECCSSCCCC-EEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHH
T ss_pred             -----HHHHhhEEEEcCCCcccc-ccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHH
Confidence                 0112234444442 2333 355444 3431 223344566777777653  1           245679999999


Q ss_pred             HHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHH
Q 022663          157 RRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLA  236 (294)
Q Consensus       157 qRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~  236 (294)
                      |||+|||||+.+|++|||||||+|||+.++..+++.|.++. + |+|||+||||++++. .||+|++|++|+++..|+++
T Consensus       146 qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~-~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~  222 (243)
T 1mv5_A          146 QRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-K-GRTTLVIAHRLSTIV-DADKIYFIEKGQITGSGKHN  222 (243)
T ss_dssp             HHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-T-TSEEEEECCSHHHHH-HCSEEEEEETTEECCCSCHH
T ss_pred             HHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCChHHHH-hCCEEEEEECCEEEEeCCHH
Confidence            99999999999999999999999999999999999999875 3 899999999999886 59999999999999999998


Q ss_pred             HHHHh
Q 022663          237 ELDEL  241 (294)
Q Consensus       237 ~~~~~  241 (294)
                      ++...
T Consensus       223 ~~~~~  227 (243)
T 1mv5_A          223 ELVAT  227 (243)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            87653

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=100.00  E-value=4.3e-49  Score=348.83  Aligned_cols=209  Identities=22%  Similarity=0.210  Sum_probs=160.9

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCC--cccCCCceEEecCCccccccccccc
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGK--HMVGGRDVVQVLNRSSFHDTQLVCS   90 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~--~~~~~~g~i~~~~~~~~~~~~~~~~   90 (294)
                      +|+++||+++|++   +++|+|+||+|++||+++|+||||||||||+|+|+|+  +.|+ +|.+.++|.+........  
T Consensus         3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~-~G~I~~~g~~~~~~~~~~--   76 (250)
T 2d2e_A            3 QLEIRDLWASIDG---ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVE-RGEILLDGENILELSPDE--   76 (250)
T ss_dssp             EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEE-EEEEEETTEECTTSCHHH--
T ss_pred             eEEEEeEEEEECC---EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC-ceEEEECCEECCCCCHHH--
Confidence            6999999999975   5799999999999999999999999999999999998  5665 899999886542110000  


Q ss_pred             CCcccccccccccccccCc-ccccccccHHHHh-hcC---CC--Cc----HHHHHHHHHHcCCC---ccccccc-CCHHH
Q 022663           91 GDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-FGV---EG--SD----PVRRERLIELLDID---LQWRMHK-VSDGQ  155 (294)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~---~~--~~----~~~~~~~l~~l~l~---~~~~~~~-LSgGq  155 (294)
                              ..+..++++++ ..+++.++..+++ +..   ..  ..    .++..++++.+++.   .++++.+ |||||
T Consensus        77 --------~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq  148 (250)
T 2d2e_A           77 --------RARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGE  148 (250)
T ss_dssp             --------HHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----H
T ss_pred             --------HHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHH
Confidence                    00112333333 2344455554432 211   01  11    23456788888983   4778898 99999


Q ss_pred             HHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhh-hceEEEeeCCeEEeccc
Q 022663          156 RRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETW-ATHLAYIQDGELRRAEK  234 (294)
Q Consensus       156 kqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~-~d~v~~l~~G~i~~~g~  234 (294)
                      ||||+|||||+.+|++|||||||+|||+.++..++++|.++.+ .|+|||+||||++++..+ ||+|++|++|+++..|+
T Consensus       149 kQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~  227 (250)
T 2d2e_A          149 KKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRG-PNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGG  227 (250)
T ss_dssp             HHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCS-TTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEES
T ss_pred             HHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeC
Confidence            9999999999999999999999999999999999999998754 589999999999999988 59999999999999998


Q ss_pred             HH
Q 022663          235 LA  236 (294)
Q Consensus       235 ~~  236 (294)
                      ++
T Consensus       228 ~~  229 (250)
T 2d2e_A          228 PE  229 (250)
T ss_dssp             HH
T ss_pred             HH
Confidence            77

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=100.00  E-value=3.6e-48  Score=342.43  Aligned_cols=207  Identities=20%  Similarity=0.200  Sum_probs=169.0

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      +|+++||+++       ++|+|+||+|++||+++|+||||||||||+|+|+|++.|+  |.+.++|.+......      
T Consensus         4 ~l~~~~l~~~-------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~--G~i~~~g~~~~~~~~------   68 (249)
T 2qi9_C            4 VMQLQDVAES-------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK--GSIQFAGQPLEAWSA------   68 (249)
T ss_dssp             EEEEEEEEET-------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE--EEEEETTEEGGGSCH------
T ss_pred             EEEEEceEEE-------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC--eEEEECCEECCcCCH------
Confidence            7999999985       3899999999999999999999999999999999998875  999998865321100      


Q ss_pred             cccccccccccccccCc-ccccccccHHHHh-hcCC-CCcHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHHHcc
Q 022663           93 LSYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-FGVE-GSDPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMGLLH  167 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~-~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL~~  167 (294)
                           ..++..++++++ ..++..++..+++ ++.. ....++..++++.+++.  .++++.+|||||||||+|||||+.
T Consensus        69 -----~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~  143 (249)
T 2qi9_C           69 -----TKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQ  143 (249)
T ss_dssp             -----HHHHHHEEEECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHH
T ss_pred             -----HHHhceEEEECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHc
Confidence                 012233444444 2344455655443 3321 11245667889999985  578899999999999999999999


Q ss_pred             CCC-------EEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHH
Q 022663          168 PFK-------VLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDE  240 (294)
Q Consensus       168 ~p~-------iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  240 (294)
                      +|+       +|||||||+|||+.++..++++|.++.++ |+|||+||||++++..+||++++|++|+++..|+++++..
T Consensus       144 ~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  222 (249)
T 2qi9_C          144 ITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQ-GLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT  222 (249)
T ss_dssp             HCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHSC
T ss_pred             CCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence            999       99999999999999999999999998655 8999999999999999999999999999999999888753

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=100.00  E-value=1.1e-47  Score=341.69  Aligned_cols=213  Identities=20%  Similarity=0.284  Sum_probs=164.5

Q ss_pred             ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663           12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG   91 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~   91 (294)
                      .+|+++||+++|++...+++|+|+||+|++||+++|+||||||||||+|+|+|++.+  .|.+.++|.+......     
T Consensus        16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~G~I~i~g~~i~~~~~-----   88 (260)
T 2ghi_A           16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA--EGDIKIGGKNVNKYNR-----   88 (260)
T ss_dssp             CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC--EEEEEETTEEGGGBCH-----
T ss_pred             CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC--CeEEEECCEEhhhcCH-----
Confidence            479999999999752114699999999999999999999999999999999999864  7999998865421100     


Q ss_pred             CcccccccccccccccCc-ccccccccHHH-HhhcCCCCcHHHHHHHHHHcCCC-------------cccccccCCHHHH
Q 022663           92 DLSYLGGSWSKTVGSAGE-IPLQGDFSAEH-MIFGVEGSDPVRRERLIELLDID-------------LQWRMHKVSDGQR  156 (294)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~l~l~-------------~~~~~~~LSgGqk  156 (294)
                            ..++..++++++ ..++. .+..+ +.++......+...++++.+++.             .++++.+||||||
T Consensus        89 ------~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqk  161 (260)
T 2ghi_A           89 ------NSIRSIIGIVPQDTILFN-ETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGER  161 (260)
T ss_dssp             ------HHHHTTEEEECSSCCCCS-EEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHH
T ss_pred             ------HHHhccEEEEcCCCcccc-cCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHH
Confidence                  011223444444 23333 35444 44432222334445556555541             1356789999999


Q ss_pred             HHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHH
Q 022663          157 RRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLA  236 (294)
Q Consensus       157 qRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~  236 (294)
                      |||+|||||+.+|++|||||||++||+.++..+++.|.++. + ++|||+||||++++. .||+|++|++|+++..|+++
T Consensus       162 qRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~-~-~~tviivtH~~~~~~-~~d~i~~l~~G~i~~~g~~~  238 (260)
T 2ghi_A          162 QRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLR-K-NRTLIIIAHRLSTIS-SAESIILLNKGKIVEKGTHK  238 (260)
T ss_dssp             HHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHT-T-TSEEEEECSSGGGST-TCSEEEEEETTEEEEEECHH
T ss_pred             HHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhc-C-CCEEEEEcCCHHHHH-hCCEEEEEECCEEEEECCHH
Confidence            99999999999999999999999999999999999999874 3 799999999999886 59999999999999999998


Q ss_pred             HHHHh
Q 022663          237 ELDEL  241 (294)
Q Consensus       237 ~~~~~  241 (294)
                      ++...
T Consensus       239 ~l~~~  243 (260)
T 2ghi_A          239 DLLKL  243 (260)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            88653

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=100.00  E-value=6.4e-48  Score=338.69  Aligned_cols=199  Identities=20%  Similarity=0.289  Sum_probs=154.3

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      +|+++||+++|++. ++++|+++||+|++||+++|+||||||||||+|+|+|++.|+ +|.+.++|.             
T Consensus         3 ~l~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-~G~I~~~g~-------------   67 (237)
T 2cbz_A            3 SITVRNATFTWARS-DPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV-EGHVAIKGS-------------   67 (237)
T ss_dssp             CEEEEEEEEESCTT-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEE-EEEEEECSC-------------
T ss_pred             eEEEEEEEEEeCCC-CCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CceEEECCE-------------
Confidence            69999999999631 257999999999999999999999999999999999999886 888887762             


Q ss_pred             cccccccccccccccCcccccccccHHH-HhhcCCCCcHHHHHHHHHH------cCCC-------cccccccCCHHHHHH
Q 022663           93 LSYLGGSWSKTVGSAGEIPLQGDFSAEH-MIFGVEGSDPVRRERLIEL------LDID-------LQWRMHKVSDGQRRR  158 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~------l~l~-------~~~~~~~LSgGqkqR  158 (294)
                      +.++++.           +.....+..+ +.++... ..+...++++.      ++..       .++++.+||||||||
T Consensus        68 i~~v~Q~-----------~~~~~~tv~enl~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqR  135 (237)
T 2cbz_A           68 VAYVPQQ-----------AWIQNDSLRENILFGCQL-EEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQR  135 (237)
T ss_dssp             EEEECSS-----------CCCCSEEHHHHHHTTSCC-CTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHH
T ss_pred             EEEEcCC-----------CcCCCcCHHHHhhCcccc-CHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHH
Confidence            2222221           1112334433 3333211 11222233332      2221       356789999999999


Q ss_pred             HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHH---HHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccH
Q 022663          159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFK---DECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKL  235 (294)
Q Consensus       159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~---~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~  235 (294)
                      |+|||||+.+|++|||||||++||+.++..+++.|.   ++ . .|+|||+||||++++. .||++++|++|+++..|++
T Consensus       136 v~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~-~-~~~tviivtH~~~~~~-~~d~v~~l~~G~i~~~g~~  212 (237)
T 2cbz_A          136 VSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGM-L-KNKTRILVTHSMSYLP-QVDVIIVMSGGKISEMGSY  212 (237)
T ss_dssp             HHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTST-T-TTSEEEEECSCSTTGG-GSSEEEEEETTEEEEEECH
T ss_pred             HHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhh-c-CCCEEEEEecChHHHH-hCCEEEEEeCCEEEEeCCH
Confidence            999999999999999999999999999999999984   33 2 3899999999999875 6999999999999999999


Q ss_pred             HHHHHh
Q 022663          236 AELDEL  241 (294)
Q Consensus       236 ~~~~~~  241 (294)
                      +++...
T Consensus       213 ~~~~~~  218 (237)
T 2cbz_A          213 QELLAR  218 (237)
T ss_dssp             HHHHHH
T ss_pred             HHHhhc
Confidence            887653

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=100.00  E-value=1.8e-48  Score=347.93  Aligned_cols=214  Identities=20%  Similarity=0.225  Sum_probs=164.0

Q ss_pred             cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCc--ccCCCceEEecCCccccccccc
Q 022663           11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKH--MVGGRDVVQVLNRSSFHDTQLV   88 (294)
Q Consensus        11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~--~~~~~g~i~~~~~~~~~~~~~~   88 (294)
                      .++|+++||+++|++   +++|+||||+|++||+++|+||||||||||+|+|+|++  .|+ +|.+.++|.+........
T Consensus        18 ~~~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~-~G~I~~~g~~i~~~~~~~   93 (267)
T 2zu0_C           18 SHMLSIKDLHVSVED---KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVT-GGTVEFKGKDLLALSPED   93 (267)
T ss_dssp             --CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEE-EEEEEETTEEGGGSCHHH
T ss_pred             CceEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC-CeEEEECCEECCcCCHHH
Confidence            357999999999964   57999999999999999999999999999999999984  455 899999887542110000


Q ss_pred             ccCCcccccccccccccccCc-ccccccccHHHHh-h---------cCCCCc----HHHHHHHHHHcCCC---cccccc-
Q 022663           89 CSGDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-F---------GVEGSD----PVRRERLIELLDID---LQWRMH-  149 (294)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~---------~~~~~~----~~~~~~~l~~l~l~---~~~~~~-  149 (294)
                                ..+..++++++ ..+++.++..++. +         +.....    .+++.++++.+++.   .++++. 
T Consensus        94 ----------~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~  163 (267)
T 2zu0_C           94 ----------RAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNV  163 (267)
T ss_dssp             ----------HHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTT
T ss_pred             ----------HhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCccc
Confidence                      00111333333 2233444433321 1         111111    23456788888884   367776 


Q ss_pred             cCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhh-hceEEEeeCCe
Q 022663          150 KVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETW-ATHLAYIQDGE  228 (294)
Q Consensus       150 ~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~-~d~v~~l~~G~  228 (294)
                      +|||||||||+|||||+.+|++|||||||+|||+.++..++++|.++.+ .|+|||+||||++++..+ ||++++|++|+
T Consensus       164 ~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~-~g~tviivtHd~~~~~~~~~d~v~~l~~G~  242 (267)
T 2zu0_C          164 GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRD-GKRSFIIVTHYQRILDYIKPDYVHVLYQGR  242 (267)
T ss_dssp             TCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCC-SSCEEEEECSSGGGGGTSCCSEEEEEETTE
T ss_pred             CCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEeeCHHHHHhhcCCEEEEEECCE
Confidence            5999999999999999999999999999999999999999999988753 489999999999999886 99999999999


Q ss_pred             EEecccHHHHH
Q 022663          229 LRRAEKLAELD  239 (294)
Q Consensus       229 i~~~g~~~~~~  239 (294)
                      ++..|+++++.
T Consensus       243 i~~~g~~~~~~  253 (267)
T 2zu0_C          243 IVKSGDFTLVK  253 (267)
T ss_dssp             EEEEECTTHHH
T ss_pred             EEEEcCHHHHh
Confidence            99999887764

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=100.00  E-value=1.1e-47  Score=341.71  Aligned_cols=207  Identities=20%  Similarity=0.246  Sum_probs=166.3

Q ss_pred             cEEEcceEEEcCCC-CCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663           13 SIKVCGMQFSYEGN-DKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG   91 (294)
Q Consensus        13 ~l~~~~ls~~y~~~-~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~   91 (294)
                      ||+++||+++|++. ..+++|+++||+|+ ||+++|+||||||||||+|+|+|++ |+ +|.+.++|.+.... .     
T Consensus         1 ml~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~-~G~I~~~g~~~~~~-~-----   71 (263)
T 2pjz_A            1 MIQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PY-SGNIFINGMEVRKI-R-----   71 (263)
T ss_dssp             CEEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CC-EEEEEETTEEGGGC-S-----
T ss_pred             CEEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CC-CcEEEECCEECcch-H-----
Confidence            48999999999630 00469999999999 9999999999999999999999999 86 89999988653211 0     


Q ss_pred             Cccccccccccccc-ccCcccccccccHHHH-hhcC--CCCcHHHHHHHHHHcCCC---cccccccCCHHHHHHHHHHHH
Q 022663           92 DLSYLGGSWSKTVG-SAGEIPLQGDFSAEHM-IFGV--EGSDPVRRERLIELLDID---LQWRMHKVSDGQRRRVQICMG  164 (294)
Q Consensus        92 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~l~~l~l~---~~~~~~~LSgGqkqRv~lAra  164 (294)
                             . +..++ ++++.+.. ..+..++ .+..  .....++..++++.+++.   .++++.+|||||||||+||||
T Consensus        72 -------~-~~~i~~~v~Q~~~l-~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAra  142 (263)
T 2pjz_A           72 -------N-YIRYSTNLPEAYEI-GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLA  142 (263)
T ss_dssp             -------C-CTTEEECCGGGSCT-TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHH
T ss_pred             -------H-hhheEEEeCCCCcc-CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHH
Confidence                   0 12234 44442222 4454433 2221  123355677889999986   578899999999999999999


Q ss_pred             HccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhc-eEEEeeCCeEEecccHHHHHHh
Q 022663          165 LLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWAT-HLAYIQDGELRRAEKLAELDEL  241 (294)
Q Consensus       165 L~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d-~v~~l~~G~i~~~g~~~~~~~~  241 (294)
                      |+.+|++|||||||++||+.++..++++|.++.   . |||+||||++++.++|| ++++|++|+++..|+++++.+.
T Consensus       143 L~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~---~-tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~~  216 (263)
T 2pjz_A          143 LASQPEIVGLDEPFENVDAARRHVISRYIKEYG---K-EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLES  216 (263)
T ss_dssp             HHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSC---S-EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHTE
T ss_pred             HHhCCCEEEEECCccccCHHHHHHHHHHHHHhc---C-cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHhh
Confidence            999999999999999999999999999998753   2 99999999999999999 9999999999999999888643

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=100.00  E-value=1.3e-46  Score=328.75  Aligned_cols=199  Identities=21%  Similarity=0.308  Sum_probs=152.7

Q ss_pred             ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663           12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG   91 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~   91 (294)
                      .+|+++||+++|++. ++++|+++||+|++||+++|+||||||||||+|+|+|++.|+ +|.+.++|.            
T Consensus         5 ~~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~------------   70 (229)
T 2pze_A            5 TEVVMENVTAFWEEG-GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS-EGKIKHSGR------------   70 (229)
T ss_dssp             EEEEEEEEEECSSTT-SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS-EEEEEECSC------------
T ss_pred             ceEEEEEEEEEeCCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC-ccEEEECCE------------
Confidence            379999999999631 257999999999999999999999999999999999999886 899888762            


Q ss_pred             CcccccccccccccccCcccccccccHHH-HhhcCCCCcHHHHHHHHHHcCCC-------------cccccccCCHHHHH
Q 022663           92 DLSYLGGSWSKTVGSAGEIPLQGDFSAEH-MIFGVEGSDPVRRERLIELLDID-------------LQWRMHKVSDGQRR  157 (294)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~l~l~-------------~~~~~~~LSgGqkq  157 (294)
                       +.+.++.          ..+++. +..+ +.++.. ........+++.+++.             .++++.+|||||||
T Consensus        71 -i~~v~q~----------~~~~~~-tv~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkq  137 (229)
T 2pze_A           71 -ISFCSQF----------SWIMPG-TIKENIIFGVS-YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRA  137 (229)
T ss_dssp             -EEEECSS----------CCCCSB-CHHHHHHTTSC-CCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHH
T ss_pred             -EEEEecC----------CcccCC-CHHHHhhccCC-cChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHH
Confidence             2232221          112232 4333 333321 1122223333333321             12346899999999


Q ss_pred             HHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHH-HHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHH
Q 022663          158 RVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFF-KDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLA  236 (294)
Q Consensus       158 Rv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l-~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~  236 (294)
                      ||+|||||+.+|++|||||||+|||+.++..+++.+ .++.  .++|||+||||++++. .||++++|++|+++..|+++
T Consensus       138 rv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~--~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~  214 (229)
T 2pze_A          138 RISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM--ANKTRILVTSKMEHLK-KADKILILHEGSSYFYGTFS  214 (229)
T ss_dssp             HHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT--TTSEEEEECCCHHHHH-HCSEEEEEETTEEEEEECHH
T ss_pred             HHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh--CCCEEEEEcCChHHHH-hCCEEEEEECCEEEEECCHH
Confidence            999999999999999999999999999999999964 4442  3789999999999886 59999999999999999998


Q ss_pred             HHHH
Q 022663          237 ELDE  240 (294)
Q Consensus       237 ~~~~  240 (294)
                      ++.+
T Consensus       215 ~~~~  218 (229)
T 2pze_A          215 ELQN  218 (229)
T ss_dssp             HHHT
T ss_pred             HHHh
Confidence            8764

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=100.00  E-value=5.1e-47  Score=354.13  Aligned_cols=214  Identities=19%  Similarity=0.243  Sum_probs=171.1

Q ss_pred             ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663           12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG   91 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~   91 (294)
                      ..|+++||+|+|++. +.++|+||||+|++||+++|+||||||||||||+|+|++. + +|.|.++|.+......     
T Consensus        18 ~~i~~~~l~~~y~~~-~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~-~G~I~i~G~~i~~~~~-----   89 (390)
T 3gd7_A           18 GQMTVKDLTAKYTEG-GNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T-EGEIQIDGVSWDSITL-----   89 (390)
T ss_dssp             CCEEEEEEEEESSSS-SCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-E-EEEEEESSCBTTSSCH-----
T ss_pred             CeEEEEEEEEEecCC-CeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-C-CeEEEECCEECCcCCh-----
Confidence            469999999999521 2579999999999999999999999999999999999986 4 8999999876432110     


Q ss_pred             CcccccccccccccccCcc-cccccccHHHHhhcCCCCcHHHHHHHHHHcCCC--ccccccc-----------CCHHHHH
Q 022663           92 DLSYLGGSWSKTVGSAGEI-PLQGDFSAEHMIFGVEGSDPVRRERLIELLDID--LQWRMHK-----------VSDGQRR  157 (294)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~--~~~~~~~-----------LSgGqkq  157 (294)
                            ..+++.++++++. .+++ .+..+++........++..++++.+++.  .++++.+           |||||||
T Consensus        90 ------~~~rr~ig~v~Q~~~lf~-~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQ  162 (390)
T 3gd7_A           90 ------EQWRKAFGVIPQKVFIFS-GTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQ  162 (390)
T ss_dssp             ------HHHHHTEEEESCCCCCCS-EEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHH
T ss_pred             ------HHHhCCEEEEcCCcccCc-cCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHH
Confidence                  1123345555542 3333 4555544322233455677888888885  4677777           9999999


Q ss_pred             HHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHH
Q 022663          158 RVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAE  237 (294)
Q Consensus       158 Rv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~  237 (294)
                      ||+|||||+.+|++|||||||++||+..+.++++.|+++.  .+.|+|+||||++.+ ..||||++|++|+|+..|++++
T Consensus       163 RvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~--~~~tvi~vtHd~e~~-~~aDri~vl~~G~i~~~g~~~e  239 (390)
T 3gd7_A          163 LMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF--ADCTVILCEARIEAM-LECDQFLVIEENKVRQYDSILE  239 (390)
T ss_dssp             HHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT--TTSCEEEECSSSGGG-TTCSEEEEEETTEEEEESSHHH
T ss_pred             HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--CCCEEEEEEcCHHHH-HhCCEEEEEECCEEEEECCHHH
Confidence            9999999999999999999999999999999999998753  479999999998765 4699999999999999999999


Q ss_pred             HHHhhh
Q 022663          238 LDELRN  243 (294)
Q Consensus       238 ~~~~~~  243 (294)
                      +...+.
T Consensus       240 l~~~p~  245 (390)
T 3gd7_A          240 LYHYPA  245 (390)
T ss_dssp             HHHCCS
T ss_pred             HHhCCC
Confidence            987643

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=100.00  E-value=8.9e-47  Score=326.27  Aligned_cols=195  Identities=17%  Similarity=0.186  Sum_probs=155.8

Q ss_pred             ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663           12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG   91 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~   91 (294)
                      .+|+++||+++|++    ++|+|+||+|++||+++|+||||||||||+|+|+|++.|+ +|.+.++|.+..   .     
T Consensus         9 ~~l~~~~ls~~y~~----~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~-~G~I~~~g~~~~---~-----   75 (214)
T 1sgw_A            9 SKLEIRDLSVGYDK----PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL-KGEIIYNGVPIT---K-----   75 (214)
T ss_dssp             CEEEEEEEEEESSS----EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCS-EEEEEETTEEGG---G-----
T ss_pred             ceEEEEEEEEEeCC----eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CeEEEECCEEhh---h-----
Confidence            47999999999953    6999999999999999999999999999999999998886 899999886531   0     


Q ss_pred             CcccccccccccccccCc-ccccccccHHHH-hhcC---C-CCcHHHHHHHHHHcCCCc-ccccccCCHHHHHHHHHHHH
Q 022663           92 DLSYLGGSWSKTVGSAGE-IPLQGDFSAEHM-IFGV---E-GSDPVRRERLIELLDIDL-QWRMHKVSDGQRRRVQICMG  164 (294)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~---~-~~~~~~~~~~l~~l~l~~-~~~~~~LSgGqkqRv~lAra  164 (294)
                              ++..++++++ ..++..++..++ .++.   . ....+++.++++.+++.. ++++.+|||||||||+||||
T Consensus        76 --------~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~lara  147 (214)
T 1sgw_A           76 --------VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLAST  147 (214)
T ss_dssp             --------GGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHH
T ss_pred             --------hcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHH
Confidence                    1122333333 233444454433 2221   1 223456678899998853 77899999999999999999


Q ss_pred             HccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeE
Q 022663          165 LLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL  229 (294)
Q Consensus       165 L~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i  229 (294)
                      |+.+|++|||||||++||+.++..++++|.++.++ |.|||++|||++++..+||+++++ .|+|
T Consensus       148 L~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~-g~tiiivtHd~~~~~~~~d~v~~~-~~~~  210 (214)
T 1sgw_A          148 LLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKE-KGIVIISSREELSYCDVNENLHKY-STKI  210 (214)
T ss_dssp             TTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHH-HSEEEEEESSCCTTSSEEEEGGGG-BC--
T ss_pred             HHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEe-CCcc
Confidence            99999999999999999999999999999998654 899999999999999999998754 3544

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=100.00  E-value=2.4e-44  Score=353.62  Aligned_cols=213  Identities=21%  Similarity=0.290  Sum_probs=169.2

Q ss_pred             ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663           12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG   91 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~   91 (294)
                      .+|+++||+++|++. ++++|+|+||+|++||+++|+||||||||||+|+|+|++.|+ +|.+.++|.+......     
T Consensus       340 ~~i~~~~v~~~y~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~-~G~i~~~g~~~~~~~~-----  412 (582)
T 3b5x_A          340 GEVDVKDVTFTYQGK-EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVD-SGSICLDGHDVRDYKL-----  412 (582)
T ss_pred             CeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CCEEEECCEEhhhCCH-----
Confidence            369999999999742 257999999999999999999999999999999999999887 8999999876422110     


Q ss_pred             CcccccccccccccccCcc-cccccccH-HHHhhcC-CCCcHHHHHHHHHHcCCC-------------cccccccCCHHH
Q 022663           92 DLSYLGGSWSKTVGSAGEI-PLQGDFSA-EHMIFGV-EGSDPVRRERLIELLDID-------------LQWRMHKVSDGQ  155 (294)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~-~~~~~~~~~~~l~~l~l~-------------~~~~~~~LSgGq  155 (294)
                            ..++..++++++. .++.. +. +++.++. ...+.++..++++.+++.             .+++..+|||||
T Consensus       413 ------~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq  485 (582)
T 3b5x_A          413 ------TNLRRHFALVSQNVHLFND-TIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQ  485 (582)
T ss_pred             ------HHHhcCeEEEcCCCccccc-cHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHH
Confidence                  1123344555542 33443 44 4444443 233445566677766652             133557999999


Q ss_pred             HHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccH
Q 022663          156 RRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKL  235 (294)
Q Consensus       156 kqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~  235 (294)
                      |||++|||||+.+|++|||||||++||+.++..+.+.|.++. + |+|+|+||||++.+. .||+|++|++|++++.|++
T Consensus       486 ~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~~g~~  562 (582)
T 3b5x_A          486 RQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQ-K-NKTVLVIAHRLSTIE-QADEILVVDEGEIIERGRH  562 (582)
T ss_pred             HHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-C-CCEEEEEecCHHHHH-hCCEEEEEECCEEEEECCH
Confidence            999999999999999999999999999999999999999874 3 899999999999886 6999999999999999999


Q ss_pred             HHHHHh
Q 022663          236 AELDEL  241 (294)
Q Consensus       236 ~~~~~~  241 (294)
                      +++.+.
T Consensus       563 ~~l~~~  568 (582)
T 3b5x_A          563 ADLLAQ  568 (582)
T ss_pred             HHHHhC
Confidence            998754

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=100.00  E-value=2.4e-44  Score=353.56  Aligned_cols=213  Identities=22%  Similarity=0.293  Sum_probs=169.8

Q ss_pred             ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663           12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG   91 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~   91 (294)
                      .+|+++||+++|++. ++++|+|+||+|++||+++|+||||||||||+|+|+|++.|+ +|.+.++|.+......     
T Consensus       340 ~~i~~~~v~~~y~~~-~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~-~G~i~~~g~~~~~~~~-----  412 (582)
T 3b60_A          340 GDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID-EGHILMDGHDLREYTL-----  412 (582)
T ss_dssp             CCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCS-EEEEEETTEETTTBCH-----
T ss_pred             CcEEEEEEEEEcCCC-CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCC-CCeEEECCEEccccCH-----
Confidence            469999999999741 257999999999999999999999999999999999999886 8999999876422100     


Q ss_pred             CcccccccccccccccCc-ccccccccH-HHHhhcC-CCCcHHHHHHHHHHcCCC-------------cccccccCCHHH
Q 022663           92 DLSYLGGSWSKTVGSAGE-IPLQGDFSA-EHMIFGV-EGSDPVRRERLIELLDID-------------LQWRMHKVSDGQ  155 (294)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~-~~~~~~~~~~~l~~l~l~-------------~~~~~~~LSgGq  155 (294)
                            ..++..++++++ ..+++. +. +++.++. ...+.++..++++.+++.             .+++..+|||||
T Consensus       413 ------~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq  485 (582)
T 3b60_A          413 ------ASLRNQVALVSQNVHLFND-TVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQ  485 (582)
T ss_dssp             ------HHHHHTEEEECSSCCCCSS-BHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHH
T ss_pred             ------HHHHhhCeEEccCCcCCCC-CHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHH
Confidence                  112334555554 334443 54 4444543 233445566666666542             234567999999


Q ss_pred             HHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccH
Q 022663          156 RRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKL  235 (294)
Q Consensus       156 kqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~  235 (294)
                      |||++|||||+.+|++|||||||++||+.++..+.+.|.++. + |+|+|+||||++.+. .||+|++|++|++++.|++
T Consensus       486 ~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~~g~~  562 (582)
T 3b60_A          486 RQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-K-NRTSLVIAHRLSTIE-QADEIVVVEDGIIVERGTH  562 (582)
T ss_dssp             HHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHH-T-TSEEEEECSCGGGTT-TCSEEEEEETTEEEEEECH
T ss_pred             HHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh-C-CCEEEEEeccHHHHH-hCCEEEEEECCEEEEecCH
Confidence            999999999999999999999999999999999999999875 3 899999999999886 6999999999999999999


Q ss_pred             HHHHHh
Q 022663          236 AELDEL  241 (294)
Q Consensus       236 ~~~~~~  241 (294)
                      +++.+.
T Consensus       563 ~~l~~~  568 (582)
T 3b60_A          563 SELLAQ  568 (582)
T ss_dssp             HHHHHH
T ss_pred             HHHHHc
Confidence            998754

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=100.00  E-value=3.2e-44  Score=352.79  Aligned_cols=213  Identities=23%  Similarity=0.313  Sum_probs=169.2

Q ss_pred             ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663           12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG   91 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~   91 (294)
                      ..|+++||+++|++. .+++|+|+||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|.+......     
T Consensus       340 ~~i~~~~v~~~y~~~-~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~-~G~i~i~g~~i~~~~~-----  412 (587)
T 3qf4_A          340 GSVSFENVEFRYFEN-TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPE-RGRVEVDELDVRTVKL-----  412 (587)
T ss_dssp             CCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCS-EEEEEESSSBGGGBCH-----
T ss_pred             CcEEEEEEEEEcCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCC-CcEEEECCEEcccCCH-----
Confidence            369999999999642 357999999999999999999999999999999999999887 9999999987532110     


Q ss_pred             CcccccccccccccccCcc-cccccccH-HHHhhcCCCCcHHHHHHHHHHcCC-----------C--cccccccCCHHHH
Q 022663           92 DLSYLGGSWSKTVGSAGEI-PLQGDFSA-EHMIFGVEGSDPVRRERLIELLDI-----------D--LQWRMHKVSDGQR  156 (294)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~l~l-----------~--~~~~~~~LSgGqk  156 (294)
                            ..++..++++++. .++.. +. +++.++......+...++++..++           +  .++++.+||||||
T Consensus       413 ------~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqr  485 (587)
T 3qf4_A          413 ------KDLRGHISAVPQETVLFSG-TIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQK  485 (587)
T ss_dssp             ------HHHHHHEEEECSSCCCCSE-EHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHH
T ss_pred             ------HHHHhheEEECCCCcCcCc-cHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHH
Confidence                  1223445555553 34443 54 444444433333444444443332           1  3566789999999


Q ss_pred             HHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHH
Q 022663          157 RRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLA  236 (294)
Q Consensus       157 qRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~  236 (294)
                      ||++|||||+.+|++|||||||++||+.++..+.+.|.++.  .|+|+|+||||++.+. .||+|++|++|++++.|+++
T Consensus       486 Qrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~-~~d~i~vl~~G~i~~~g~~~  562 (587)
T 3qf4_A          486 QRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT--KGCTTFIITQKIPTAL-LADKILVLHEGKVAGFGTHK  562 (587)
T ss_dssp             HHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS--TTCEEEEEESCHHHHT-TSSEEEEEETTEEEEEECHH
T ss_pred             HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC--CCCEEEEEecChHHHH-hCCEEEEEECCEEEEECCHH
Confidence            99999999999999999999999999999999999998863  4899999999999886 79999999999999999999


Q ss_pred             HHHHh
Q 022663          237 ELDEL  241 (294)
Q Consensus       237 ~~~~~  241 (294)
                      ++.+.
T Consensus       563 el~~~  567 (587)
T 3qf4_A          563 ELLEH  567 (587)
T ss_dssp             HHHHH
T ss_pred             HHHhC
Confidence            98764

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=100.00  E-value=2.6e-44  Score=352.97  Aligned_cols=214  Identities=22%  Similarity=0.312  Sum_probs=169.3

Q ss_pred             ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663           12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG   91 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~   91 (294)
                      ..|+++||+++|++. .+++|+|+||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|.+......     
T Consensus       338 ~~i~~~~v~~~y~~~-~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~-~G~i~~~g~~~~~~~~-----  410 (578)
T 4a82_A          338 GRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT-SGQILIDGHNIKDFLT-----  410 (578)
T ss_dssp             CCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCS-EEEEEETTEEGGGSCH-----
T ss_pred             CeEEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCC-CcEEEECCEEhhhCCH-----
Confidence            369999999999742 357999999999999999999999999999999999999887 9999999876432110     


Q ss_pred             CcccccccccccccccCc-ccccccccHHHHhhcCCCCcHHHHHHHHHHcCCC-------------cccccccCCHHHHH
Q 022663           92 DLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMIFGVEGSDPVRRERLIELLDID-------------LQWRMHKVSDGQRR  157 (294)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------------~~~~~~~LSgGqkq  157 (294)
                            ..++..++++++ ..+++....+++.++......+...++++..++.             .+++..+|||||||
T Consensus       411 ------~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Q  484 (578)
T 4a82_A          411 ------GSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQ  484 (578)
T ss_dssp             ------HHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHH
T ss_pred             ------HHHhhheEEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHH
Confidence                  112334555555 3344443344555554433444455555554431             23456789999999


Q ss_pred             HHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHH
Q 022663          158 RVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAE  237 (294)
Q Consensus       158 Rv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~  237 (294)
                      |++|||||+.+|++|||||||++||+.++..+.+.|.++.  .++|+|+||||++.+.. ||+|++|++|++++.|++++
T Consensus       485 rv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~e  561 (578)
T 4a82_A          485 RLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS--KDRTTLIVAHRLSTITH-ADKIVVIENGHIVETGTHRE  561 (578)
T ss_dssp             HHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT--TTSEEEEECSSGGGTTT-CSEEEEEETTEEEEEECHHH
T ss_pred             HHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHH
Confidence            9999999999999999999999999999999999998764  37899999999999864 99999999999999999999


Q ss_pred             HHHh
Q 022663          238 LDEL  241 (294)
Q Consensus       238 ~~~~  241 (294)
                      +.+.
T Consensus       562 l~~~  565 (578)
T 4a82_A          562 LIAK  565 (578)
T ss_dssp             HHHT
T ss_pred             HHhC
Confidence            8764

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=100.00  E-value=1.7e-44  Score=355.47  Aligned_cols=212  Identities=26%  Similarity=0.340  Sum_probs=168.0

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      .|+++||+++|++  ++++|+|+||+|++||+++|+||||||||||+|+|+|++.|+ +|.+.++|.+......      
T Consensus       354 ~i~~~~v~~~y~~--~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~-~G~i~~~g~~i~~~~~------  424 (598)
T 3qf4_B          354 EIEFKNVWFSYDK--KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVD-RGQILVDGIDIRKIKR------  424 (598)
T ss_dssp             CEEEEEEECCSSS--SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCS-EEEEEETTEEGGGSCH------
T ss_pred             eEEEEEEEEECCC--CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCC-CeEEEECCEEhhhCCH------
Confidence            5999999999975  357999999999999999999999999999999999999887 8999999876532110      


Q ss_pred             cccccccccccccccCcc-cccccccHHHHhhcCCCCcHHHHHHHHHHcCCC-------------cccccccCCHHHHHH
Q 022663           93 LSYLGGSWSKTVGSAGEI-PLQGDFSAEHMIFGVEGSDPVRRERLIELLDID-------------LQWRMHKVSDGQRRR  158 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------------~~~~~~~LSgGqkqR  158 (294)
                           ..++..++++++. .++.....+++.++....+.+...++++.+++.             ..++..+||||||||
T Consensus       425 -----~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qr  499 (598)
T 3qf4_B          425 -----SSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQL  499 (598)
T ss_dssp             -----HHHHHHEEEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHH
T ss_pred             -----HHHHhceEEEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHH
Confidence                 1233445555553 344433334444544333334444554444431             123447899999999


Q ss_pred             HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663          159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL  238 (294)
Q Consensus       159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~  238 (294)
                      ++|||||+.+|++|||||||++||+.++..+.+.|.++.  .|+|+|+||||++.+.. ||+|++|++|++++.|+++++
T Consensus       500 v~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l  576 (598)
T 3qf4_B          500 LAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM--EGKTSIIIAHRLNTIKN-ADLIIVLRDGEIVEMGKHDEL  576 (598)
T ss_dssp             HHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH--TTSEEEEESCCTTHHHH-CSEEEEECSSSEEECSCHHHH
T ss_pred             HHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHH
Confidence            999999999999999999999999999999999999874  48999999999999875 999999999999999999998


Q ss_pred             HHh
Q 022663          239 DEL  241 (294)
Q Consensus       239 ~~~  241 (294)
                      .+.
T Consensus       577 ~~~  579 (598)
T 3qf4_B          577 IQK  579 (598)
T ss_dssp             HHT
T ss_pred             HhC
Confidence            765

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=100.00  E-value=4.4e-44  Score=322.72  Aligned_cols=195  Identities=21%  Similarity=0.306  Sum_probs=138.7

Q ss_pred             ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663           12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG   91 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~   91 (294)
                      ++|+++||++.+     +++|+++||+|++||+++|+||||||||||+|+|+|++.|+ +|.+.++|.            
T Consensus        39 ~~l~~~~l~~~~-----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~-~G~I~~~g~------------  100 (290)
T 2bbs_A           39 DSLSFSNFSLLG-----TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS-EGKIKHSGR------------  100 (290)
T ss_dssp             -----------C-----CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEE-EEEEECCSC------------
T ss_pred             ceEEEEEEEEcC-----ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC-CcEEEECCE------------
Confidence            479999999864     36999999999999999999999999999999999999886 888887652            


Q ss_pred             CcccccccccccccccCcccccccccHHHHhhcCCCCcHHHHHHHHHHcCCC-------------cccccccCCHHHHHH
Q 022663           92 DLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDID-------------LQWRMHKVSDGQRRR  158 (294)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------------~~~~~~~LSgGqkqR  158 (294)
                       +.++++.          ..+++. +..+++.+.. ........+++.+++.             .++++.+||||||||
T Consensus       101 -i~~v~Q~----------~~l~~~-tv~enl~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QR  167 (290)
T 2bbs_A          101 -ISFCSQN----------SWIMPG-TIKENIIGVS-YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRAR  167 (290)
T ss_dssp             -EEEECSS----------CCCCSS-BHHHHHHTTC-CCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHH
T ss_pred             -EEEEeCC----------CccCcc-cHHHHhhCcc-cchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHH
Confidence             2232221          112222 4444333221 1222223334444331             123457999999999


Q ss_pred             HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHH-HHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHH
Q 022663          159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFF-KDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAE  237 (294)
Q Consensus       159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l-~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~  237 (294)
                      |+|||||+.+|++|||||||+|||+.++..+++.+ .++.  .|+|||+||||++++. .||++++|++|+++..|++++
T Consensus       168 v~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~--~~~tviivtHd~~~~~-~~d~i~~l~~G~i~~~g~~~~  244 (290)
T 2bbs_A          168 ISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM--ANKTRILVTSKMEHLK-KADKILILHEGSSYFYGTFSE  244 (290)
T ss_dssp             HHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT--TTSEEEEECCCHHHHH-HSSEEEEEETTEEEEEECHHH
T ss_pred             HHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh--CCCEEEEEecCHHHHH-cCCEEEEEECCeEEEeCCHHH
Confidence            99999999999999999999999999999999864 4442  3889999999999886 599999999999999999988


Q ss_pred             HHH
Q 022663          238 LDE  240 (294)
Q Consensus       238 ~~~  240 (294)
                      +..
T Consensus       245 l~~  247 (290)
T 2bbs_A          245 LQN  247 (290)
T ss_dssp             HHH
T ss_pred             Hhh
Confidence            754

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=100.00  E-value=4.6e-42  Score=333.87  Aligned_cols=202  Identities=21%  Similarity=0.199  Sum_probs=160.6

Q ss_pred             cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663           11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS   90 (294)
Q Consensus        11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~   90 (294)
                      .++++++|+++.|++    ..|+++||+|++||++||+||||||||||+|+|+|++.|+ +|.+.+.             
T Consensus       285 ~~~l~~~~l~~~~~~----~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~-~G~i~~~-------------  346 (538)
T 1yqt_A          285 ETLVTYPRLVKDYGS----FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPT-EGKIEWD-------------  346 (538)
T ss_dssp             CEEEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS-BCCCCCC-------------
T ss_pred             CeEEEEeeEEEEECC----EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CeEEEEC-------------
Confidence            357999999999964    4799999999999999999999999999999999998886 6666531             


Q ss_pred             CCcccccccccccccccCcccccccccHHHHhhcC--C-CCcHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHHH
Q 022663           91 GDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGV--E-GSDPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMGL  165 (294)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL  165 (294)
                      ..+.++++...          .....+..++....  . ....+.+.++++.+++.  .++++.+|||||||||+|||||
T Consensus       347 ~~i~~v~Q~~~----------~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL  416 (538)
T 1yqt_A          347 LTVAYKPQYIK----------ADYEGTVYELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATL  416 (538)
T ss_dssp             CCEEEECSSCC----------CCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHH
T ss_pred             ceEEEEecCCc----------CCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHH
Confidence            12333333211          11223333332211  0 01234456677888874  5788999999999999999999


Q ss_pred             ccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeC--CeEEecccHHHHHH
Q 022663          166 LHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQD--GELRRAEKLAELDE  240 (294)
Q Consensus       166 ~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~--G~i~~~g~~~~~~~  240 (294)
                      +.+|++|||||||+|||+.++..++++|.+++++.|.|||+||||++++..+||||++|++  |++...|+++++..
T Consensus       417 ~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~  493 (538)
T 1yqt_A          417 LRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMRE  493 (538)
T ss_dssp             TSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred             HhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence            9999999999999999999999999999998766799999999999999999999999986  77888888877654

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=100.00  E-value=1.3e-41  Score=334.37  Aligned_cols=201  Identities=21%  Similarity=0.205  Sum_probs=161.5

Q ss_pred             ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663           12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG   91 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~   91 (294)
                      ++++++|++++|++    ..|+++||+|.+||+++|+||||||||||+|+|+|++.|+ +|.+.+.             .
T Consensus       356 ~~l~~~~l~~~~~~----~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~-~G~I~~~-------------~  417 (607)
T 3bk7_A          356 TLVEYPRLVKDYGS----FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT-EGKVEWD-------------L  417 (607)
T ss_dssp             EEEEECCEEEECSS----CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS-BSCCCCC-------------C
T ss_pred             eEEEEeceEEEecc----eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCC-ceEEEEe-------------e
Confidence            57999999999964    4799999999999999999999999999999999998886 6766531             1


Q ss_pred             CcccccccccccccccCcccccccccHHHHhhcC--CC-CcHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHHHc
Q 022663           92 DLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGV--EG-SDPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMGLL  166 (294)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL~  166 (294)
                      .+.+++|..          ......+..++....  .. .....+.++++.+++.  .++++.+|||||||||+|||||+
T Consensus       418 ~i~~v~Q~~----------~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~  487 (607)
T 3bk7_A          418 TVAYKPQYI----------KAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLL  487 (607)
T ss_dssp             CEEEECSSC----------CCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHT
T ss_pred             EEEEEecCc----------cCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHH
Confidence            233333321          111223333332211  00 1234456788888885  57889999999999999999999


Q ss_pred             cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeC--CeEEecccHHHHHH
Q 022663          167 HPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQD--GELRRAEKLAELDE  240 (294)
Q Consensus       167 ~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~--G~i~~~g~~~~~~~  240 (294)
                      .+|++|||||||+|||+.++..++++|++++++.|.|||+||||++++..+||||++|++  |++...|+++++..
T Consensus       488 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~  563 (607)
T 3bk7_A          488 RDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMRE  563 (607)
T ss_dssp             SCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred             hCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence            999999999999999999999999999998766799999999999999999999999986  77788888887754

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=100.00  E-value=2e-41  Score=328.91  Aligned_cols=200  Identities=19%  Similarity=0.167  Sum_probs=156.3

Q ss_pred             ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663           12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG   91 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~   91 (294)
                      +.++++++++.|++    ..|+++||+|++||++||+||||||||||+|+|+|++.|+ +|.+.+.+..           
T Consensus       268 ~~l~~~~l~~~~~~----~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~~~~-----------  331 (538)
T 3ozx_A          268 TKMKWTKIIKKLGD----FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITAD-EGSVTPEKQI-----------  331 (538)
T ss_dssp             EEEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS-BCCEESSCCC-----------
T ss_pred             ceEEEcceEEEECC----EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEECCee-----------
Confidence            47999999999965    4688899999999999999999999999999999999887 8888765432           


Q ss_pred             CcccccccccccccccCcccccccccHHHHh-hcCC---CCcHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHHH
Q 022663           92 DLSYLGGSWSKTVGSAGEIPLQGDFSAEHMI-FGVE---GSDPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMGL  165 (294)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL  165 (294)
                       +.+.++...          .....+..++. ....   ........++++.+++.  .++++.+|||||||||+|||||
T Consensus       332 -i~~~~q~~~----------~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL  400 (538)
T 3ozx_A          332 -LSYKPQRIF----------PNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATL  400 (538)
T ss_dssp             -EEEECSSCC----------CCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHH
T ss_pred             -eEeechhcc----------cccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHH
Confidence             222222110          01112222222 1111   11223456777778875  5789999999999999999999


Q ss_pred             ccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeC--CeEEecccHHHH
Q 022663          166 LHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQD--GELRRAEKLAEL  238 (294)
Q Consensus       166 ~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~--G~i~~~g~~~~~  238 (294)
                      +.+|++|||||||+|||+.++..++++|++++++.|.|||+||||++++..+||||++|++  |.+...+++.++
T Consensus       401 ~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~  475 (538)
T 3ozx_A          401 AKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTL  475 (538)
T ss_dssp             HSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEH
T ss_pred             HcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHH
Confidence            9999999999999999999999999999999877799999999999999999999999986  445555555443

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=100.00  E-value=1.7e-41  Score=358.94  Aligned_cols=215  Identities=20%  Similarity=0.287  Sum_probs=173.9

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      .|+++||+|+|+++.+.++|+||||+|++||.+||+||||||||||+++|.|++.|. +|.|.++|.+...-.       
T Consensus      1076 ~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~-~G~I~iDG~di~~i~------- 1147 (1321)
T 4f4c_A         1076 KVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTL-GGEIFIDGSEIKTLN------- 1147 (1321)
T ss_dssp             CEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCS-SSEEEETTEETTTBC-------
T ss_pred             eEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCC-CCEEEECCEEhhhCC-------
Confidence            599999999997533457999999999999999999999999999999999999887 999999998753211       


Q ss_pred             cccccccccccccccCcc-cccccccHHHHhhcCC--CCcHHHHHHHHHHcCCC---------ccc----ccccCCHHHH
Q 022663           93 LSYLGGSWSKTVGSAGEI-PLQGDFSAEHMIFGVE--GSDPVRRERLIELLDID---------LQW----RMHKVSDGQR  156 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~l~l~---------~~~----~~~~LSgGqk  156 (294)
                          ...++..+++++|. .++.....+|+.++..  ..+.+.+.++++..++.         .+.    ...+||||||
T Consensus      1148 ----~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQr 1223 (1321)
T 4f4c_A         1148 ----PEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQK 1223 (1321)
T ss_dssp             ----HHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHH
T ss_pred             ----HHHHHhheEEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHH
Confidence                12345556666663 3454444556556643  23455566666665541         233    3457999999


Q ss_pred             HHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHH
Q 022663          157 RRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLA  236 (294)
Q Consensus       157 qRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~  236 (294)
                      ||++|||||+++|+|||||||||+||+++...|.+.|++..  .++|+|+|+|.+..+.. ||+|++|++|+|++.|+++
T Consensus      1224 QriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~--~~~TvI~IAHRLsTi~~-aD~I~Vld~G~IvE~Gth~ 1300 (1321)
T 4f4c_A         1224 QRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR--EGRTCIVIAHRLNTVMN-ADCIAVVSNGTIIEKGTHT 1300 (1321)
T ss_dssp             HHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS--SSSEEEEECSSSSTTTT-CSEEEEESSSSEEEEECHH
T ss_pred             HHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc--CCCEEEEeccCHHHHHh-CCEEEEEECCEEEEECCHH
Confidence            99999999999999999999999999999999999998754  48999999999998875 9999999999999999999


Q ss_pred             HHHHhh
Q 022663          237 ELDELR  242 (294)
Q Consensus       237 ~~~~~~  242 (294)
                      ++++..
T Consensus      1301 eLl~~~ 1306 (1321)
T 4f4c_A         1301 QLMSEK 1306 (1321)
T ss_dssp             HHHHCC
T ss_pred             HHHhCC
Confidence            998754

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=100.00  E-value=1.9e-40  Score=350.99  Aligned_cols=215  Identities=22%  Similarity=0.295  Sum_probs=176.1

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      .|+++||+|+|++..+.++|+|+||+|++|+.++|+||||||||||+++|.|++.|. +|.+.++|.+...-.       
T Consensus       415 ~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~-~G~I~idG~~i~~~~-------  486 (1321)
T 4f4c_A          415 DITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVL-KGKITIDGVDVRDIN-------  486 (1321)
T ss_dssp             CEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCS-EEEEEETTEETTTSC-------
T ss_pred             cEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccc-cCcccCCCccchhcc-------
Confidence            599999999997544568999999999999999999999999999999999999887 999999997653211       


Q ss_pred             cccccccccccccccCccc-ccccccHHHHhhcCCCCcHHHHHHHHHHcCCC-------------cccccccCCHHHHHH
Q 022663           93 LSYLGGSWSKTVGSAGEIP-LQGDFSAEHMIFGVEGSDPVRRERLIELLDID-------------LQWRMHKVSDGQRRR  158 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------------~~~~~~~LSgGqkqR  158 (294)
                          ...++..+++++|.+ ++.....+|+.++....+.+++.++++..++.             .......||||||||
T Consensus       487 ----~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQR  562 (1321)
T 4f4c_A          487 ----LEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQR  562 (1321)
T ss_dssp             ----HHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHH
T ss_pred             ----HHHHhhcccccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHH
Confidence                112445667776644 44444456666776555666666666665431             123456799999999


Q ss_pred             HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663          159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL  238 (294)
Q Consensus       159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~  238 (294)
                      ++||||++++|+|||||||||+||+.+...+.+.|.++.  .|+|+|+|||++..+. .||+|++|++|+|++.|+.+++
T Consensus       563 iaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~--~~~T~iiiaHrls~i~-~aD~Iivl~~G~ive~Gth~eL  639 (1321)
T 4f4c_A          563 IAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAA--KGRTTIIIAHRLSTIR-NADLIISCKNGQVVEVGDHRAL  639 (1321)
T ss_dssp             HHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH--TTSEEEEECSCTTTTT-TCSEEEEEETTEEEEEECHHHH
T ss_pred             HHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHh--CCCEEEEEcccHHHHH-hCCEEEEeeCCeeeccCCHHHH
Confidence            999999999999999999999999999999999998875  3899999999999876 5999999999999999999999


Q ss_pred             HHhh
Q 022663          239 DELR  242 (294)
Q Consensus       239 ~~~~  242 (294)
                      .+..
T Consensus       640 ~~~~  643 (1321)
T 4f4c_A          640 MAQQ  643 (1321)
T ss_dssp             HTTT
T ss_pred             HHhh
Confidence            7653

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=100.00  E-value=1.2e-40  Score=351.79  Aligned_cols=214  Identities=21%  Similarity=0.272  Sum_probs=169.4

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      .|+++||+|+|++..+.++|+|+||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|.+.....       
T Consensus       387 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~-~G~i~i~g~~i~~~~-------  458 (1284)
T 3g5u_A          387 NLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPL-DGMVSIDGQDIRTIN-------  458 (1284)
T ss_dssp             CEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCS-EEEEEETTEEGGGSC-------
T ss_pred             eEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CeEEEECCEEHHhCC-------
Confidence            599999999997532357999999999999999999999999999999999999887 899999987643211       


Q ss_pred             cccccccccccccccCcc-cccccccHHHHhhcCCCCcHHHHHHHHHHcCC---------C----cccccccCCHHHHHH
Q 022663           93 LSYLGGSWSKTVGSAGEI-PLQGDFSAEHMIFGVEGSDPVRRERLIELLDI---------D----LQWRMHKVSDGQRRR  158 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l---------~----~~~~~~~LSgGqkqR  158 (294)
                          ...++..+++++|. .++.....+++.++......+...++++..++         .    ...+..+||||||||
T Consensus       459 ----~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~Qr  534 (1284)
T 3g5u_A          459 ----VRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQR  534 (1284)
T ss_dssp             ----HHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHH
T ss_pred             ----HHHHHhheEEEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHH
Confidence                11233445666553 34444334555565544344444444433322         1    234567899999999


Q ss_pred             HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663          159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL  238 (294)
Q Consensus       159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~  238 (294)
                      ++|||||+.+|+||||||||++||+.+...+.+.+.++.  .|+|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus       535 iaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~i~~-~d~i~vl~~G~i~~~g~~~~l  611 (1284)
T 3g5u_A          535 IAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR--EGRTTIVIAHRLSTVRN-ADVIAGFDGGVIVEQGNHDEL  611 (1284)
T ss_dssp             HHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH--TTSEEEEECSCHHHHTT-CSEEEECSSSCCCCEECHHHH
T ss_pred             HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHH
Confidence            999999999999999999999999999999999998753  48999999999999976 999999999999999999998


Q ss_pred             HHh
Q 022663          239 DEL  241 (294)
Q Consensus       239 ~~~  241 (294)
                      .+.
T Consensus       612 ~~~  614 (1284)
T 3g5u_A          612 MRE  614 (1284)
T ss_dssp             HHT
T ss_pred             HhC
Confidence            765

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=100.00  E-value=2.5e-40  Score=349.20  Aligned_cols=215  Identities=21%  Similarity=0.302  Sum_probs=166.0

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      .|+++||+++|++..+.++|+|+||+|++||++||+||||||||||+++|+|++.|+ +|.+.++|.+......      
T Consensus      1030 ~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~-~G~I~i~g~~i~~~~~------ 1102 (1284)
T 3g5u_A         1030 NVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPM-AGSVFLDGKEIKQLNV------ 1102 (1284)
T ss_dssp             CEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCS-EEEEESSSSCTTSSCH------
T ss_pred             cEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC-CCEEEECCEEcccCCH------
Confidence            599999999997522246999999999999999999999999999999999999887 9999999987532111      


Q ss_pred             cccccccccccccccCcccccccccH-HHHhhcCC--CCcHHHHHHHHHHcCCC-------------cccccccCCHHHH
Q 022663           93 LSYLGGSWSKTVGSAGEIPLQGDFSA-EHMIFGVE--GSDPVRRERLIELLDID-------------LQWRMHKVSDGQR  156 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~l~~l~l~-------------~~~~~~~LSgGqk  156 (294)
                           ..++..++++++.+.....+. +++.++..  ....+...++++..++.             ......+||||||
T Consensus      1103 -----~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~ 1177 (1284)
T 3g5u_A         1103 -----QWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQK 1177 (1284)
T ss_dssp             -----HHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHH
T ss_pred             -----HHHHhceEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHH
Confidence                 112333444444332223344 44444332  12333444444443321             1234568999999


Q ss_pred             HHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHH
Q 022663          157 RRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLA  236 (294)
Q Consensus       157 qRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~  236 (294)
                      |||+|||||+.+|+||||||||++||+.+...+.+.|.+.  ..|+|||+||||++.+.. ||||++|++|++++.|+++
T Consensus      1178 Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~--~~~~tvi~isH~l~~i~~-~dri~vl~~G~i~~~g~~~ 1254 (1284)
T 3g5u_A         1178 QRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA--REGRTCIVIAHRLSTIQN-ADLIVVIQNGKVKEHGTHQ 1254 (1284)
T ss_dssp             HHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHH--SSSSCEEEECSCTTGGGS-CSEEEEEETBEEEEEECHH
T ss_pred             HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHh--CCCCEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHH
Confidence            9999999999999999999999999999999999999874  348999999999999865 9999999999999999999


Q ss_pred             HHHHhh
Q 022663          237 ELDELR  242 (294)
Q Consensus       237 ~~~~~~  242 (294)
                      ++.+..
T Consensus      1255 ~l~~~~ 1260 (1284)
T 3g5u_A         1255 QLLAQK 1260 (1284)
T ss_dssp             HHHHSC
T ss_pred             HHHhCC
Confidence            998653

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4e-40  Score=323.43  Aligned_cols=199  Identities=22%  Similarity=0.247  Sum_probs=156.0

Q ss_pred             cceEEEcCCCCCCCceeeeeEEEeCC-----CEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663           17 CGMQFSYEGNDKPPLFYDFNLGISPG-----SRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG   91 (294)
Q Consensus        17 ~~ls~~y~~~~~~~iL~~vsl~i~~G-----e~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~   91 (294)
                      .+++++|++  ...+++++||++.+|     |+++|+||||||||||+|+|+|++.|+ +|.. +.            ..
T Consensus       350 ~~~~~~y~~--~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~-~G~~-~~------------~~  413 (608)
T 3j16_B          350 ASRAFSYPS--LKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD-EGQD-IP------------KL  413 (608)
T ss_dssp             SSSCCEECC--EEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCS-BCCC-CC------------SC
T ss_pred             cceeEEecC--cccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCC-CCcC-cc------------CC
Confidence            678888864  235789999999999     889999999999999999999999887 4531 00            01


Q ss_pred             CcccccccccccccccCcccccccccHHHHhh-cCC--CCcHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHHHc
Q 022663           92 DLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIF-GVE--GSDPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMGLL  166 (294)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL~  166 (294)
                      .+.+.++..          ......+..++.. ...  ........++++.+++.  .++++.+|||||||||+|||||+
T Consensus       414 ~i~~~~q~~----------~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~  483 (608)
T 3j16_B          414 NVSMKPQKI----------APKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALG  483 (608)
T ss_dssp             CEEEECSSC----------CCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTT
T ss_pred             cEEEecccc----------cccCCccHHHHHHHHhhcccccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHH
Confidence            122222211          0011122323221 111  12344556788888885  58899999999999999999999


Q ss_pred             cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeC--CeEEecccHHHHHHh
Q 022663          167 HPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQD--GELRRAEKLAELDEL  241 (294)
Q Consensus       167 ~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~--G~i~~~g~~~~~~~~  241 (294)
                      .+|++|||||||+|||+.++..++++|+++.++.|.|||+||||++++..+||||++|++  |++...|+++++++.
T Consensus       484 ~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~  560 (608)
T 3j16_B          484 IPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTG  560 (608)
T ss_dssp             SCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred             hCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence            999999999999999999999999999998766799999999999999999999999996  899999999988764

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=100.00  E-value=6.9e-40  Score=322.06  Aligned_cols=202  Identities=19%  Similarity=0.258  Sum_probs=147.6

Q ss_pred             CcccEEE--------cceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceE-------
Q 022663           10 KLNSIKV--------CGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVV-------   74 (294)
Q Consensus        10 ~~~~l~~--------~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i-------   74 (294)
                      +..+|++        +||+++|++  ...+|+++| +|++||+++|+||||||||||+|+|+|++.|+ .|.+       
T Consensus        80 p~~~i~i~~l~~~~~~~ls~~yg~--~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~-~G~~~~~~~~~  155 (607)
T 3bk7_A           80 PFNAISIVNLPEQLDEDCVHRYGV--NAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPN-LCEDNDSWDNV  155 (607)
T ss_dssp             SSCCCEEEEECTTGGGSEEEECST--TCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCC-TTTTCCCHHHH
T ss_pred             CcceEEEecCCccccCCeEEEECC--CCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCC-CCccccccchh
Confidence            3456888        999999975  224899999 99999999999999999999999999998886 5553       


Q ss_pred             --EecCCcccccccccccCCcccccccccccccccCc-ccccc---cccHHHHhhcCCCCcHHHHHHHHHHcCCC--ccc
Q 022663           75 --QVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGE-IPLQG---DFSAEHMIFGVEGSDPVRRERLIELLDID--LQW  146 (294)
Q Consensus        75 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~l~l~--~~~  146 (294)
                        .+.|............         ....+++..+ .....   ..+..+++...  ....++.++++.+++.  .++
T Consensus       156 ~~~~~G~~~~~~~~~~~~---------~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~--~~~~~~~~~L~~lgL~~~~~~  224 (607)
T 3bk7_A          156 IRAFRGNELQNYFERLKN---------GEIRPVVKPQYVDLLPKAVKGKVRELLKKV--DEVGKFEEVVKELELENVLDR  224 (607)
T ss_dssp             HHHTTTSTHHHHHHHHHH---------TSCCCEEECSCGGGGGGTCCSBHHHHHHHT--CCSSCHHHHHHHTTCTTGGGS
T ss_pred             hheeCCEehhhhhhhhhh---------hhcceEEeechhhhchhhccccHHHHhhhh--HHHHHHHHHHHHcCCCchhCC
Confidence              1122211000000000         0000111111 00000   01333332211  1123467789999985  588


Q ss_pred             ccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeC
Q 022663          147 RMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQD  226 (294)
Q Consensus       147 ~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~  226 (294)
                      ++.+|||||||||+|||||+.+|++|||||||++||+.++..++++|+++.+ .|.|||+||||++++..+||+|++|++
T Consensus       225 ~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~g~tvIivsHdl~~~~~~adri~vl~~  303 (607)
T 3bk7_A          225 ELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN-EGKAVLVVEHDLAVLDYLSDVIHVVYG  303 (607)
T ss_dssp             BGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECSCHHHHHHHCSEEEEEES
T ss_pred             ChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEecChHHHHhhCCEEEEECC
Confidence            9999999999999999999999999999999999999999999999999875 499999999999999999999999986


Q ss_pred             C
Q 022663          227 G  227 (294)
Q Consensus       227 G  227 (294)
                      +
T Consensus       304 ~  304 (607)
T 3bk7_A          304 E  304 (607)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=100.00  E-value=1.3e-39  Score=316.58  Aligned_cols=198  Identities=18%  Similarity=0.225  Sum_probs=141.8

Q ss_pred             EEE-cceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceE---------EecCCcccc
Q 022663           14 IKV-CGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVV---------QVLNRSSFH   83 (294)
Q Consensus        14 l~~-~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i---------~~~~~~~~~   83 (294)
                      .++ +||+++|++  ...+|+++| +|++||+++|+||||||||||+|+|+|++.|+ .|.+         .+.|.....
T Consensus        21 ~~~~~~ls~~yg~--~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~-~G~~~~~~~~~~~~~~g~~~~~   96 (538)
T 1yqt_A           21 EQLEEDCVHRYGV--NAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPN-LCGDNDSWDGVIRAFRGNELQN   96 (538)
T ss_dssp             ---CCCEEEECST--TCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCC-TTTTCCSHHHHHHHTTTSTHHH
T ss_pred             hhHhcCcEEEECC--ccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CCccCcchhhhHHhhCCccHHH
Confidence            455 699999975  225899999 99999999999999999999999999998886 5552         112221100


Q ss_pred             cccccccCCcccccccccccccccCc-cccccc---ccHHHHhhcCCCCcHHHHHHHHHHcCCC--cccccccCCHHHHH
Q 022663           84 DTQLVCSGDLSYLGGSWSKTVGSAGE-IPLQGD---FSAEHMIFGVEGSDPVRRERLIELLDID--LQWRMHKVSDGQRR  157 (294)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkq  157 (294)
                      .......         ....+++..+ ....+.   .+..++....  ....++.++++.+++.  .++++.+|||||||
T Consensus        97 ~~~~~~~---------~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~--~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQ  165 (538)
T 1yqt_A           97 YFEKLKN---------GEIRPVVKPQYVDLIPKAVKGKVIELLKKA--DETGKLEEVVKALELENVLEREIQHLSGGELQ  165 (538)
T ss_dssp             HHHHHHT---------TSCCCEEECSCGGGSGGGCCSBHHHHHHHH--CSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHH
T ss_pred             HHHHHHH---------HhhhhhhhhhhhhhcchhhhccHHHHHhhh--hHHHHHHHHHHHcCCChhhhCChhhCCHHHHH
Confidence            0000000         0000111111 000000   1222222111  1123467788999985  57899999999999


Q ss_pred             HHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCC
Q 022663          158 RVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDG  227 (294)
Q Consensus       158 Rv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G  227 (294)
                      ||+|||||+.+|++|||||||++||+.++.+++++|+++.+ .|+|||+||||++++..+||+|++|++|
T Consensus       166 Rv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~g~tvi~vsHd~~~~~~~~dri~vl~~~  234 (538)
T 1yqt_A          166 RVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSE-EGKSVLVVEHDLAVLDYLSDIIHVVYGE  234 (538)
T ss_dssp             HHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred             HHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence            99999999999999999999999999999999999999875 5999999999999999999999999864

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=100.00  E-value=2.2e-39  Score=329.61  Aligned_cols=218  Identities=22%  Similarity=0.270  Sum_probs=151.3

Q ss_pred             cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccc---cccc-
Q 022663           11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSF---HDTQ-   86 (294)
Q Consensus        11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~---~~~~-   86 (294)
                      .++|+++||+++|++. .+++|+|+||+|.+||+++|+||||||||||+|+|+|++.|+ +|.+.+.+....   .+.. 
T Consensus       669 ~~mL~v~nLs~~Y~g~-~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~-sG~I~~~~~~~I~yv~Q~~~  746 (986)
T 2iw3_A          669 KAIVKVTNMEFQYPGT-SKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPT-SGEVYTHENCRIAYIKQHAF  746 (986)
T ss_dssp             SEEEEEEEEEECCTTC-SSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCS-EEEEEECTTCCEEEECHHHH
T ss_pred             CceEEEEeeEEEeCCC-CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEEcCccceEeeccchh
Confidence            3579999999999642 246999999999999999999999999999999999998887 888887653100   0000 


Q ss_pred             --------ccccCCcccccc------------------c-------------cc--------cccc--cc-------Cc-
Q 022663           87 --------LVCSGDLSYLGG------------------S-------------WS--------KTVG--SA-------GE-  109 (294)
Q Consensus        87 --------~~~~~~~~~~~~------------------~-------------~~--------~~~~--~~-------~~-  109 (294)
                              ......+.+..+                  +             .+        ..+.  +.       .+ 
T Consensus       747 ~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~~~sv~EN  826 (986)
T 2iw3_A          747 AHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGEN  826 (986)
T ss_dssp             HHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEES
T ss_pred             hhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhhhhhhhhh
Confidence                    000000000000                  0             00        0000  00       00 


Q ss_pred             cc----ccccccHHH-------------------------HhhcC-CCCcHHHHHHHHHHcCCC----cccccccCCHHH
Q 022663          110 IP----LQGDFSAEH-------------------------MIFGV-EGSDPVRRERLIELLDID----LQWRMHKVSDGQ  155 (294)
Q Consensus       110 ~~----~~~~~~~~~-------------------------~~~~~-~~~~~~~~~~~l~~l~l~----~~~~~~~LSgGq  155 (294)
                      ..    .+..++..+                         ...+. ......++.++++.+++.    .++++.+|||||
T Consensus       827 i~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~~~~~LSGGQ  906 (986)
T 2iw3_A          827 IGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQ  906 (986)
T ss_dssp             TTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHSCGGGCCHHH
T ss_pred             hhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcCCCccccCHHH
Confidence            00    000011000                         00111 112245567889999985    266899999999


Q ss_pred             HHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEeccc
Q 022663          156 RRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEK  234 (294)
Q Consensus       156 kqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~  234 (294)
                      ||||+|||||+.+|++|||||||+|||+.++..+.+.|.+    .+.|||+||||++++..+||++++|++|+++..|+
T Consensus       907 kQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~----~g~tVIiISHD~e~v~~l~DrVivL~~G~Iv~~G~  981 (986)
T 2iw3_A          907 KVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKE----FEGGVIIITHSAEFTKNLTEEVWAVKDGRMTPSGH  981 (986)
T ss_dssp             HHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHS----CSSEEEEECSCHHHHTTTCCEEECCBTTBCCC---
T ss_pred             HHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHH----hCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCC
Confidence            9999999999999999999999999999999998888764    36799999999999999999999999999987664

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=100.00  E-value=1e-37  Score=317.43  Aligned_cols=195  Identities=19%  Similarity=0.260  Sum_probs=151.2

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhC-CcccCCCceEEecCCcccccccccccC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAG-KHMVGGRDVVQVLNRSSFHDTQLVCSG   91 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G-~~~~~~~g~i~~~~~~~~~~~~~~~~~   91 (294)
                      .|...|++++|++   +.+|+|+||+|++|++++|+||||||||||+|+|+| .+          .|.+....      .
T Consensus       435 ~L~~~~ls~~yg~---~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i----------~g~~~~~~------~  495 (986)
T 2iw3_A          435 DLCNCEFSLAYGA---KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQV----------DGFPTQEE------C  495 (986)
T ss_dssp             EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCS----------TTCCCTTT------S
T ss_pred             eeEEeeEEEEECC---EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc----------CCCccccc------e
Confidence            5777799999975   579999999999999999999999999999999994 22          11110000      0


Q ss_pred             CcccccccccccccccCcccccccccHHHHhhc-CCCCcHHHHHHHHHHcCCC---cccccccCCHHHHHHHHHHHHHcc
Q 022663           92 DLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFG-VEGSDPVRRERLIELLDID---LQWRMHKVSDGQRRRVQICMGLLH  167 (294)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~l~---~~~~~~~LSgGqkqRv~lAraL~~  167 (294)
                      .+.+..+..         ..++..++..+++.. .... .++..++++.+++.   .++++.+|||||||||+|||||+.
T Consensus       496 ~~~~v~q~~---------~~~~~~ltv~e~l~~~~~~~-~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~  565 (986)
T 2iw3_A          496 RTVYVEHDI---------DGTHSDTSVLDFVFESGVGT-KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLR  565 (986)
T ss_dssp             CEEETTCCC---------CCCCTTSBHHHHHHTTCSSC-HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHT
T ss_pred             eEEEEcccc---------cccccCCcHHHHHHHhhcCH-HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhc
Confidence            011111100         012233444443321 1112 45677889999984   478899999999999999999999


Q ss_pred             CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEE-ecccHHHHHH
Q 022663          168 PFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELR-RAEKLAELDE  240 (294)
Q Consensus       168 ~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~~  240 (294)
                      +|++|||||||+|||+.++..++++|.+    .|.|||+||||++++..+||+|++|++|+++ ..|+++++..
T Consensus       566 ~P~lLLLDEPTs~LD~~~~~~l~~~L~~----~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~  635 (986)
T 2iw3_A          566 NADILLLDEPTNHLDTVNVAWLVNYLNT----CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVK  635 (986)
T ss_dssp             TCSEEEEESTTTTCCHHHHHHHHHHHHH----SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred             CCCEEEEECCccCCCHHHHHHHHHHHHh----CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence            9999999999999999999999999976    4899999999999999999999999999996 6899888764

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.9e-38  Score=310.25  Aligned_cols=206  Identities=22%  Similarity=0.304  Sum_probs=141.6

Q ss_pred             cceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC-cc-
Q 022663           17 CGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD-LS-   94 (294)
Q Consensus        17 ~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~-~~-   94 (294)
                      +|++++|+.  ....|++++ ++++||++||+||||||||||||+|+|++.|+ .|.+.....  +........+. +. 
T Consensus        81 ~~~~~~Y~~--~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~-~G~i~~~~~--~~~~~~~~~g~~~~~  154 (608)
T 3j16_B           81 AHVTHRYSA--NSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPN-LGRFDDPPE--WQEIIKYFRGSELQN  154 (608)
T ss_dssp             TTEEEECST--TSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCC-TTTTCCSSC--HHHHHHHTTTSTHHH
T ss_pred             CCeEEEECC--CceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCC-CceEecccc--hhhhhheecChhhhh
Confidence            367889975  234677777 69999999999999999999999999999887 666521110  00000000000 00 


Q ss_pred             ccccccccccc------ccCccc--ccc-cccHHHHhhcCCCCcHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHH
Q 022663           95 YLGGSWSKTVG------SAGEIP--LQG-DFSAEHMIFGVEGSDPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICM  163 (294)
Q Consensus        95 ~~~~~~~~~~~------~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAr  163 (294)
                      +........+.      +....+  ... ..+..++..........++.++++.+++.  .++++.+|||||||||+|||
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAr  234 (608)
T 3j16_B          155 YFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGM  234 (608)
T ss_dssp             HHHHHHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHH
T ss_pred             hhhHHHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHH
Confidence            00000000000      000000  000 00111111111122345677889999986  68899999999999999999


Q ss_pred             HHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeE
Q 022663          164 GLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL  229 (294)
Q Consensus       164 aL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i  229 (294)
                      ||+.+|++|||||||++||+.++..++++|+++.+ .|.|||+||||++++..+||+|++|++|..
T Consensus       235 aL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~-~g~tvi~vtHdl~~~~~~~drv~vl~~~~~  299 (608)
T 3j16_B          235 SCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLA-PTKYVICVEHDLSVLDYLSDFVCIIYGVPS  299 (608)
T ss_dssp             HHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGT-TTCEEEEECSCHHHHHHHCSEEEEEESCTT
T ss_pred             HHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHHhCCEEEEEeCCcc
Confidence            99999999999999999999999999999998864 489999999999999999999999987653

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=100.00  E-value=8.8e-38  Score=311.55  Aligned_cols=207  Identities=19%  Similarity=0.261  Sum_probs=132.2

Q ss_pred             CCceeeeeEEEeCCCEEEEECCCCCcHHHHH---------------------HHHhCCcccCCCceE-------EecCCc
Q 022663           29 PPLFYDFNLGISPGSRCLLVGANGSGKTTLL---------------------KILAGKHMVGGRDVV-------QVLNRS   80 (294)
Q Consensus        29 ~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLl---------------------k~i~G~~~~~~~g~i-------~~~~~~   80 (294)
                      ..+|+||||+|++||++||+||||||||||+                     +++.|+..|+ .+.+       .+.+..
T Consensus        31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~-~~~i~~~~~~i~~~~~~  109 (670)
T 3ux8_A           31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPD-VDAIEGLSPAISIDQKT  109 (670)
T ss_dssp             STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CC-CSEEESCCCEEEESSCC
T ss_pred             ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCC-ccceeccccceEecCch
Confidence            4689999999999999999999999999998                     7888876665 3333       333322


Q ss_pred             ccccccccccCCccccccccc------ccccccCc---ccccccccHHHHh-hc--CC--CCc----H------HHHHHH
Q 022663           81 SFHDTQLVCSGDLSYLGGSWS------KTVGSAGE---IPLQGDFSAEHMI-FG--VE--GSD----P------VRRERL  136 (294)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~---~~~~~~~~~~~~~-~~--~~--~~~----~------~~~~~~  136 (294)
                      .....    ...+.+..+...      ..++...+   ...+..++..++. +.  ..  ...    .      .....+
T Consensus       110 ~~~~~----~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (670)
T 3ux8_A          110 TSRNP----RSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGF  185 (670)
T ss_dssp             ---------CCBHHHHTTCC-------------------------CC--------------------------CHHHHHH
T ss_pred             hhccc----hhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHH
Confidence            11100    011111111100      00000000   0011112222211 10  00  000    0      011234


Q ss_pred             HHHcCCC---cccccccCCHHHHHHHHHHHHHccCCC--EEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCh
Q 022663          137 IELLDID---LQWRMHKVSDGQRRRVQICMGLLHPFK--VLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIF  211 (294)
Q Consensus       137 l~~l~l~---~~~~~~~LSgGqkqRv~lAraL~~~p~--iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~  211 (294)
                      ++.+++.   .++++.+|||||||||+|||||+.+|+  +|||||||+|||+..+.+++++|+++.+ .|.|||+||||+
T Consensus       186 l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~-~g~tvi~vtHd~  264 (670)
T 3ux8_A          186 LQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRD-LGNTLIVVEHDE  264 (670)
T ss_dssp             HHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHH-TTCEEEEECCCH
T ss_pred             HHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCH
Confidence            6777774   478999999999999999999999998  9999999999999999999999999864 599999999999


Q ss_pred             hHHHhhhceEEEe------eCCeEEecccHHHHHHhh
Q 022663          212 DGLETWATHLAYI------QDGELRRAEKLAELDELR  242 (294)
Q Consensus       212 ~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~~~  242 (294)
                      +++. .||+|++|      ++|+++..|+++++.+..
T Consensus       265 ~~~~-~~d~ii~l~~g~~~~~G~i~~~g~~~~~~~~~  300 (670)
T 3ux8_A          265 DTML-AADYLIDIGPGAGIHGGEVVAAGTPEEVMNDP  300 (670)
T ss_dssp             HHHH-HCSEEEEECSSSGGGCCSEEEEECHHHHHTCT
T ss_pred             HHHh-hCCEEEEecccccccCCEEEEecCHHHHhcCc
Confidence            9876 59999999      899999999999987543

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=100.00  E-value=3.8e-37  Score=298.93  Aligned_cols=198  Identities=19%  Similarity=0.240  Sum_probs=137.4

Q ss_pred             cceEEEcCCCCCCCceeeeeEEEe-CCCEEEEECCCCCcHHHHHHHHhCCcccCCCceE-----------EecCCccccc
Q 022663           17 CGMQFSYEGNDKPPLFYDFNLGIS-PGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVV-----------QVLNRSSFHD   84 (294)
Q Consensus        17 ~~ls~~y~~~~~~~iL~~vsl~i~-~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i-----------~~~~~~~~~~   84 (294)
                      ++.+.+|+.+    -|+-..|.+. +||++||+||||||||||+|+|+|++.|+ .|.+           .+.|......
T Consensus         3 ~~~~~~~~~~----~f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~-~G~i~~~~~~~~~~~~~~g~~i~~~   77 (538)
T 3ozx_A            3 GEVIHRYKVN----GFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPN-FGDPNSKVGKDEVLKRFRGKEIYNY   77 (538)
T ss_dssp             CCEEEESSTT----SCEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCC-TTCTTSCCCHHHHHHHHTTSTTHHH
T ss_pred             CCCceecCCC----ceeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCC-CCccccccchhhHHhhcCCeeHHHH
Confidence            4678899752    3555666554 89999999999999999999999999887 5654           1222211000


Q ss_pred             ccccccCCcccccccccccccccCcccccccccHHHHhhcCCCCcHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHH
Q 022663           85 TQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDID--LQWRMHKVSDGQRRRVQIC  162 (294)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lA  162 (294)
                      ..........     ....+.+....+.....+..+......  ...+.+++++.+++.  .++++.+|||||||||+||
T Consensus        78 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~l~~~~--~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA  150 (538)
T 3ozx_A           78 FKELYSNELK-----IVHKIQYVEYASKFLKGTVNEILTKID--ERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVA  150 (538)
T ss_dssp             HHHHHTTCCC-----EEEECSCTTGGGTTCCSBHHHHHHHHC--CSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHH
T ss_pred             HHHHhhcccc-----hhhccchhhhhhhhccCcHHHHhhcch--hHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHH
Confidence            0000000000     000111111111001112222221111  123456788889885  5889999999999999999


Q ss_pred             HHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCe
Q 022663          163 MGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGE  228 (294)
Q Consensus       163 raL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~  228 (294)
                      |||+.+|++|||||||++||+.++..++++|+++. + |+|||+||||++++..+||+|++|++|.
T Consensus       151 ~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~-~-g~tii~vsHdl~~~~~~~d~i~vl~~~~  214 (538)
T 3ozx_A          151 ASLLREADVYIFDQPSSYLDVRERMNMAKAIRELL-K-NKYVIVVDHDLIVLDYLTDLIHIIYGES  214 (538)
T ss_dssp             HHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHC-T-TSEEEEECSCHHHHHHHCSEEEEEEEET
T ss_pred             HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHh-C-CCEEEEEEeChHHHHhhCCEEEEecCCc
Confidence            99999999999999999999999999999999884 4 8999999999999999999999998654

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=100.00  E-value=3.4e-36  Score=300.11  Aligned_cols=108  Identities=22%  Similarity=0.307  Sum_probs=95.8

Q ss_pred             HHHHHHHHcCCC---cccccccCCHHHHHHHHHHHHHccCC---CEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEE
Q 022663          132 RRERLIELLDID---LQWRMHKVSDGQRRRVQICMGLLHPF---KVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIV  205 (294)
Q Consensus       132 ~~~~~l~~l~l~---~~~~~~~LSgGqkqRv~lAraL~~~p---~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tvi  205 (294)
                      +..+.++.+++.   .++++.+|||||||||+|||||+.+|   ++|||||||+|||+.++..++++|+++.+ .|.|||
T Consensus       522 ~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~-~g~tvi  600 (670)
T 3ux8_A          522 RKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVD-NGDTVL  600 (670)
T ss_dssp             HHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEE
T ss_pred             HHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEE
Confidence            345566777774   47889999999999999999999887   59999999999999999999999999865 499999


Q ss_pred             EEeCChhHHHhhhceEEEe------eCCeEEecccHHHHHHh
Q 022663          206 YATHIFDGLETWATHLAYI------QDGELRRAEKLAELDEL  241 (294)
Q Consensus       206 ivsHd~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~~  241 (294)
                      +||||++++. .||||++|      ++|++++.|+++++.+.
T Consensus       601 ~vtHd~~~~~-~~d~i~~l~~~~g~~~G~i~~~g~~~~~~~~  641 (670)
T 3ux8_A          601 VIEHNLDVIK-TADYIIDLGPEGGDRGGQIVAVGTPEEVAEV  641 (670)
T ss_dssp             EECCCHHHHT-TCSEEEEEESSSGGGCCEEEEEECHHHHHTC
T ss_pred             EEeCCHHHHH-hCCEEEEecCCcCCCCCEEEEecCHHHHHhC
Confidence            9999999875 69999999      89999999999998654

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=100.00  E-value=7.8e-34  Score=286.29  Aligned_cols=109  Identities=19%  Similarity=0.223  Sum_probs=98.5

Q ss_pred             HHHHHHHHcCCC---cccccccCCHHHHHHHHHHHHHccC---CCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEE
Q 022663          132 RRERLIELLDID---LQWRMHKVSDGQRRRVQICMGLLHP---FKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIV  205 (294)
Q Consensus       132 ~~~~~l~~l~l~---~~~~~~~LSgGqkqRv~lAraL~~~---p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tvi  205 (294)
                      +..++++.+++.   .++++.+|||||||||+||++|+.+   |++|||||||+|||+..+..++++|.++.+ .|.|||
T Consensus       709 ~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~G~tVI  787 (842)
T 2vf7_A          709 RALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVD-AGNTVI  787 (842)
T ss_dssp             HHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEEE
T ss_pred             HHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEE
Confidence            456788888885   4788999999999999999999996   799999999999999999999999999875 599999


Q ss_pred             EEeCChhHHHhhhceEEEe------eCCeEEecccHHHHHHhh
Q 022663          206 YATHIFDGLETWATHLAYI------QDGELRRAEKLAELDELR  242 (294)
Q Consensus       206 ivsHd~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~~~  242 (294)
                      +||||++++ ..||+|++|      ++|+++..|+++++.+..
T Consensus       788 visHdl~~i-~~aDrii~L~p~~g~~~G~Iv~~g~~~el~~~~  829 (842)
T 2vf7_A          788 AVEHKMQVV-AASDWVLDIGPGAGEDGGRLVAQGTPAEVAQAA  829 (842)
T ss_dssp             EECCCHHHH-TTCSEEEEECSSSGGGCCSEEEEECHHHHTTCT
T ss_pred             EEcCCHHHH-HhCCEEEEECCCCCCCCCEEEEEcCHHHHHhCc
Confidence            999999999 689999999      799999999999987543

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=100.00  E-value=4.9e-33  Score=282.62  Aligned_cols=109  Identities=20%  Similarity=0.321  Sum_probs=97.5

Q ss_pred             HHHHHHHHcCCC---cccccccCCHHHHHHHHHHHHHccCC---CEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEE
Q 022663          132 RRERLIELLDID---LQWRMHKVSDGQRRRVQICMGLLHPF---KVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIV  205 (294)
Q Consensus       132 ~~~~~l~~l~l~---~~~~~~~LSgGqkqRv~lAraL~~~p---~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tvi  205 (294)
                      +..++++.+++.   +++++.+|||||||||+|||||+.+|   +||||||||+|||+..+..+++.|.++.+ .|.|||
T Consensus       784 ~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~-~G~TVI  862 (916)
T 3pih_A          784 RTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVD-RGNTVI  862 (916)
T ss_dssp             HHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEE
T ss_pred             HHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEE
Confidence            445677888874   47889999999999999999999875   79999999999999999999999999865 599999


Q ss_pred             EEeCChhHHHhhhceEEEe------eCCeEEecccHHHHHHhh
Q 022663          206 YATHIFDGLETWATHLAYI------QDGELRRAEKLAELDELR  242 (294)
Q Consensus       206 ivsHd~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~~~  242 (294)
                      +||||++++.. ||+|++|      ++|+|++.|+++++.+..
T Consensus       863 vI~HdL~~i~~-ADrIivLgp~gg~~~G~Iv~~Gtpeel~~~~  904 (916)
T 3pih_A          863 VIEHNLDVIKN-ADHIIDLGPEGGKEGGYIVATGTPEEIAKNP  904 (916)
T ss_dssp             EECCCHHHHTT-CSEEEEEESSSGGGCCEEEEEESHHHHHSCT
T ss_pred             EEeCCHHHHHh-CCEEEEecCCCCCCCCEEEEEcCHHHHHhCC
Confidence            99999998865 9999999      899999999999997654

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=100.00  E-value=1.6e-32  Score=277.72  Aligned_cols=107  Identities=21%  Similarity=0.295  Sum_probs=96.5

Q ss_pred             HHHHHHHcCCC---cccccccCCHHHHHHHHHHHHHccCC---CEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEE
Q 022663          133 RERLIELLDID---LQWRMHKVSDGQRRRVQICMGLLHPF---KVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVY  206 (294)
Q Consensus       133 ~~~~l~~l~l~---~~~~~~~LSgGqkqRv~lAraL~~~p---~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tvii  206 (294)
                      ..++++.+++.   .++++.+|||||||||+||++|+.+|   ++|||||||+|||+..+..++++|.++.+ .|.|||+
T Consensus       825 ~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~G~TVIv  903 (972)
T 2r6f_A          825 KLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVD-NGDTVLV  903 (972)
T ss_dssp             HHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEEEE
T ss_pred             HHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEE
Confidence            45678888884   47889999999999999999999865   99999999999999999999999999865 5999999


Q ss_pred             EeCChhHHHhhhceEEEe------eCCeEEecccHHHHHHh
Q 022663          207 ATHIFDGLETWATHLAYI------QDGELRRAEKLAELDEL  241 (294)
Q Consensus       207 vsHd~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~~  241 (294)
                      ||||++++. .||+|++|      ++|+++..|+++++...
T Consensus       904 isHdl~~i~-~aDrIivL~p~gG~~~G~Iv~~g~~~el~~~  943 (972)
T 2r6f_A          904 IEHNLDVIK-TADYIIDLGPEGGDRGGQIVAVGTPEEVAEV  943 (972)
T ss_dssp             ECCCHHHHT-TCSEEEEECSSSTTSCCSEEEEESHHHHHTC
T ss_pred             EcCCHHHHH-hCCEEEEEcCCCCCCCCEEEEecCHHHHHhC
Confidence            999999874 79999999      78999999999998754

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-35  Score=283.12  Aligned_cols=197  Identities=15%  Similarity=0.156  Sum_probs=140.5

Q ss_pred             cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCc-e-EEecCCccccccccc
Q 022663           11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRD-V-VQVLNRSSFHDTQLV   88 (294)
Q Consensus        11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g-~-i~~~~~~~~~~~~~~   88 (294)
                      .+|++++||+++|+         ++||++++|++++|+||||||||||+|+|+|++.++ +| . +.+++..        
T Consensus       116 ~~mi~~~nl~~~y~---------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~-~G~~pI~vdg~~--------  177 (460)
T 2npi_A          116 HTMKYIYNLHFMLE---------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKF-NAYQPLYINLDP--------  177 (460)
T ss_dssp             CTHHHHHHHHHHHH---------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHH-HCCCCEEEECCT--------
T ss_pred             cchhhhhhhhehhh---------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCccccc-CCceeEEEcCCc--------
Confidence            46788999998883         699999999999999999999999999999998886 77 6 7777621        


Q ss_pred             ccCCcccccccccccccccCcccccccccHHHHhhcCC---C-CcHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHH
Q 022663           89 CSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVE---G-SDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMG  164 (294)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv~lAra  164 (294)
                       ...+.+.++....       .++...++..+..++..   . ...++...+++.+++.....+.+|||||||||+||||
T Consensus       178 -~~~i~~vpq~~~l-------~~~~~~~tv~eni~~~~~~~~~~~~~~~~~ll~~~gl~~~~~~~~LSgGq~qrlalAra  249 (460)
T 2npi_A          178 -QQPIFTVPGCISA-------TPISDILDAQLPTWGQSLTSGATLLHNKQPMVKNFGLERINENKDLYLECISQLGQVVG  249 (460)
T ss_dssp             -TSCSSSCSSCCEE-------EECCSCCCTTCTTCSCBCBSSCCSSCCBCCEECCCCSSSGGGCHHHHHHHHHHHHHHHH
T ss_pred             -cCCeeeeccchhh-------cccccccchhhhhcccccccCcchHHHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHH
Confidence             1122233222110       00111112211112111   0 0111223345556664222288999999999999999


Q ss_pred             --HccCCCE----EEeeC-CCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChh------HHHhhhce-----EEEee-
Q 022663          165 --LLHPFKV----LLLDE-ITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFD------GLETWATH-----LAYIQ-  225 (294)
Q Consensus       165 --L~~~p~i----LlLDE-Pt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~------~~~~~~d~-----v~~l~-  225 (294)
                        |+.+|++    ||||| ||++||+. +..+.+++    ++.+.|+|+||||.+      ++..+||+     |++|+ 
T Consensus       250 ~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~----~~~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k  324 (460)
T 2npi_A          250 QRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHII----EKLNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPK  324 (460)
T ss_dssp             HHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHH----HHTTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECC
T ss_pred             HHhccCcccCcceEEEeCCcccccChh-HHHHHHHH----HHhCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeC
Confidence              9999999    99999 99999998 44444444    445889999999988      88899999     99999 


Q ss_pred             CCeEEecccHHHHH
Q 022663          226 DGELRRAEKLAELD  239 (294)
Q Consensus       226 ~G~i~~~g~~~~~~  239 (294)
                      +|+++ .++++++.
T Consensus       325 ~G~iv-~g~~~~~~  337 (460)
T 2npi_A          325 LDGVS-AVDDVYKR  337 (460)
T ss_dssp             CTTCC-CCCHHHHH
T ss_pred             CCcEE-ECCHHHHh
Confidence            99999 88887764

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=99.97  E-value=2.3e-31  Score=250.63  Aligned_cols=79  Identities=16%  Similarity=0.230  Sum_probs=73.5

Q ss_pred             CCHHHHHHHHHHHHHccCC--CEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEe----
Q 022663          151 VSDGQRRRVQICMGLLHPF--KVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYI----  224 (294)
Q Consensus       151 LSgGqkqRv~lAraL~~~p--~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l----  224 (294)
                      |||||||||+||++|+.+|  ++|||||||+|||+..+..+.+.|.++.  .|.|||+||||++++ .+||++++|    
T Consensus       296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~--~~~~vi~itH~~~~~-~~~d~i~~l~k~~  372 (415)
T 4aby_A          296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA--DTRQVLVVTHLAQIA-ARAHHHYKVEKQV  372 (415)
T ss_dssp             SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT--TTSEEEEECSCHHHH-TTCSEEEEEEEEE
T ss_pred             cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh--CCCEEEEEeCcHHHH-hhcCeEEEEEEec
Confidence            6999999999999999999  9999999999999999999999999885  389999999999876 579999999    


Q ss_pred             eCCeEEec
Q 022663          225 QDGELRRA  232 (294)
Q Consensus       225 ~~G~i~~~  232 (294)
                      ++|+++..
T Consensus       373 ~~G~~~~~  380 (415)
T 4aby_A          373 EDGRTVSH  380 (415)
T ss_dssp             ETTEEEEE
T ss_pred             cCCceEEE
Confidence            99998654

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=99.96  E-value=1.1e-29  Score=236.00  Aligned_cols=85  Identities=18%  Similarity=0.203  Sum_probs=78.0

Q ss_pred             ccccccCCHHHHHHHHHHHHHc------cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhh
Q 022663          145 QWRMHKVSDGQRRRVQICMGLL------HPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWA  218 (294)
Q Consensus       145 ~~~~~~LSgGqkqRv~lAraL~------~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~  218 (294)
                      ++++.+|||||||||+||+||+      .+|++|||||||+|||+..+..++++|.++.+ .|.|||+||||+++ ...|
T Consensus       274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~-~g~tvi~itH~~~~-~~~~  351 (365)
T 3qf7_A          274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELER-LNKVIVFITHDREF-SEAF  351 (365)
T ss_dssp             EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGG-SSSEEEEEESCHHH-HTTC
T ss_pred             CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEecchHH-HHhC
Confidence            4678899999999999999999      79999999999999999999999999998854 59999999999998 5679


Q ss_pred             ceEEEeeCCeEEe
Q 022663          219 THLAYIQDGELRR  231 (294)
Q Consensus       219 d~v~~l~~G~i~~  231 (294)
                      |++++|++|+++.
T Consensus       352 d~~~~l~~G~i~~  364 (365)
T 3qf7_A          352 DRKLRITGGVVVN  364 (365)
T ss_dssp             SCEEEEETTEEC-
T ss_pred             CEEEEEECCEEEe
Confidence            9999999999864

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=99.96  E-value=4.4e-31  Score=220.08  Aligned_cols=147  Identities=12%  Similarity=0.024  Sum_probs=96.8

Q ss_pred             eeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcccccccccccccccCccccc
Q 022663           34 DFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQ  113 (294)
Q Consensus        34 ~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (294)
                      ||||+|++||+++|+||||||||||+|++.+-..     .+  ... ..       .   .+..+..        .....
T Consensus         1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~-----~~--~~d-~~-------~---g~~~~~~--------~~~~~   54 (171)
T 4gp7_A            1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTE-----VI--SSD-FC-------R---GLMSDDE--------NDQTV   54 (171)
T ss_dssp             CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGG-----EE--EHH-HH-------H---HHHCSST--------TCGGG
T ss_pred             CccccCCCCEEEEEECCCCCCHHHHHHHHccCCe-----EE--ccH-HH-------H---HHhcCcc--------cchhh
Confidence            6899999999999999999999999998764211     10  000 00       0   0000000        00000


Q ss_pred             ccccHHHHhhcCCCCcHHHHHHHHHHcCCC-cccccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHH--------
Q 022663          114 GDFSAEHMIFGVEGSDPVRRERLIELLDID-LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVV--------  184 (294)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~--------  184 (294)
                      ........         ..........+.. ........|+|||||++||||++.+|++|+|||||++||+.        
T Consensus        55 ~~~~~~~~---------~~~~~~~~~~g~~~~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~  125 (171)
T 4gp7_A           55 TGAAFDVL---------HYIVSKRLQLGKLTVVDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQ  125 (171)
T ss_dssp             HHHHHHHH---------HHHHHHHHHTTCCEEEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCC
T ss_pred             HHHHHHHH---------HHHHHHHHhCCCeEEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCC
Confidence            00000000         0011111122322 22234567999999999999999999999999999999999        


Q ss_pred             --------HHHHHHHHHHHHHHhcCcEEEEEeCChhHHHh
Q 022663          185 --------ARMDLLDFFKDECEQRGATIVYATHIFDGLET  216 (294)
Q Consensus       185 --------~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~  216 (294)
                              .+..+.+.|.++.++ |.|+|+||||++++..
T Consensus       126 ~~~~vi~~~~~~l~~~l~~l~~~-g~tvi~vtH~~~~~~~  164 (171)
T 4gp7_A          126 VEEYVIRKHTQQMKKSIKGLQRE-GFRYVYILNSPEEVEE  164 (171)
T ss_dssp             CCHHHHHHHHHHHHHHSTTHHHH-TCSEEEEECSHHHHHH
T ss_pred             CCHHHHHHHHHHhhhhhhhHHhc-CCcEEEEeCCHHHhhh
Confidence                    568899998887665 9999999999998875

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=99.94  E-value=3.1e-30  Score=221.78  Aligned_cols=154  Identities=15%  Similarity=0.094  Sum_probs=92.8

Q ss_pred             CCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcccccccccccccccC
Q 022663           29 PPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAG  108 (294)
Q Consensus        29 ~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (294)
                      +.+|++|    ++||+++|+||||||||||+|+|+|+ .|+ +|.+...  .... ..           ......+++++
T Consensus        13 ~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~-~G~I~~~--~~~~-~~-----------~~~~~~ig~v~   72 (208)
T 3b85_A           13 KHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQ-SKQVSRI--ILTR-PA-----------VEAGEKLGFLP   72 (208)
T ss_dssp             HHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHH-TTSCSEE--EEEE-CS-----------CCTTCCCCSSC
T ss_pred             HHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCc-CCeeeeE--EecC-Cc-----------hhhhcceEEec
Confidence            4689985    89999999999999999999999999 876 6666321  0000 00           00111233332


Q ss_pred             cccccccc-----cHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCH
Q 022663          109 EIPLQGDF-----SAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDV  183 (294)
Q Consensus       109 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~  183 (294)
                      +.+ ...+     ........  ......+.++++. ++           ||||||+|||||+.+|++|||||||++   
T Consensus        73 q~~-~enl~~~~~~~~~~~~~--~~~~~~~~~~l~~-gl-----------Gq~qrv~lAraL~~~p~lllLDEPts~---  134 (208)
T 3b85_A           73 GTL-NEKIDPYLRPLHDALRD--MVEPEVIPKLMEA-GI-----------VEVAPLAYMRGRTLNDAFVILDEAQNT---  134 (208)
T ss_dssp             C-------CTTTHHHHHHHTT--TSCTTHHHHHHHT-TS-----------EEEEEGGGGTTCCBCSEEEEECSGGGC---
T ss_pred             CCH-HHHHHHHHHHHHHHHHH--hccHHHHHHHHHh-CC-----------chHHHHHHHHHHhcCCCEEEEeCCccc---
Confidence            211 0000     00000000  0112233444443 22           999999999999999999999999999   


Q ss_pred             HHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCe
Q 022663          184 VARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGE  228 (294)
Q Consensus       184 ~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~  228 (294)
                       ++..++++|.++ + .|.||| ||||++++..    +...++|.
T Consensus       135 -~~~~l~~~l~~l-~-~g~tii-vtHd~~~~~~----~~~~~~G~  171 (208)
T 3b85_A          135 -TPAQMKMFLTRL-G-FGSKMV-VTGDITQVDL----PGGQKSGL  171 (208)
T ss_dssp             -CHHHHHHHHTTB-C-TTCEEE-EEEC----------------CC
T ss_pred             -cHHHHHHHHHHh-c-CCCEEE-EECCHHHHhC----cCCCCCcH
Confidence             888999999887 3 488999 9999986653    33455664

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.94  E-value=1.3e-26  Score=211.74  Aligned_cols=82  Identities=18%  Similarity=0.239  Sum_probs=72.2

Q ss_pred             ccccccCCHHHHHHHHHHHHHc----cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhce
Q 022663          145 QWRMHKVSDGQRRRVQICMGLL----HPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATH  220 (294)
Q Consensus       145 ~~~~~~LSgGqkqRv~lAraL~----~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~  220 (294)
                      +.++.+||+|||||++||+||+    .+|++|||||||++||+..+..++++|.++.  .+.|||+|||+.+ +..+||+
T Consensus       214 ~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~--~~~~vi~~tH~~~-~~~~~d~  290 (322)
T 1e69_A          214 DQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS--KHTQFIVITHNKI-VMEAADL  290 (322)
T ss_dssp             CCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT--TTSEEEEECCCTT-GGGGCSE
T ss_pred             cCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEECCHH-HHhhCce
Confidence            4567899999999999999997    6899999999999999999999999998863  3789999999975 5668998


Q ss_pred             E--EEeeCCeE
Q 022663          221 L--AYIQDGEL  229 (294)
Q Consensus       221 v--~~l~~G~i  229 (294)
                      +  ++|.+|..
T Consensus       291 ~~~v~~~~g~s  301 (322)
T 1e69_A          291 LHGVTMVNGVS  301 (322)
T ss_dssp             EEEEEESSSCE
T ss_pred             EEEEEEeCCEE
Confidence            7  88888864

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=99.93  E-value=9.6e-29  Score=232.15  Aligned_cols=173  Identities=10%  Similarity=0.117  Sum_probs=125.3

Q ss_pred             CceeeeeEEEeCCC--------------------EEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccc
Q 022663           30 PLFYDFNLGISPGS--------------------RCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVC   89 (294)
Q Consensus        30 ~iL~~vsl~i~~Ge--------------------~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~   89 (294)
                      .+|++|||+|++|+                    +++|+||||||||||+|+|+|+..|+ .|.+.+++.+...      
T Consensus        37 ~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~-~GsI~~~g~~~t~------  109 (413)
T 1tq4_A           37 EILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEE-EGAAKTGVVEVTM------  109 (413)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTS-TTSCCCCC----C------
T ss_pred             HHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCcc-CceEEECCeecce------
Confidence            58999999999999                    99999999999999999999998876 7777766543210      


Q ss_pred             cCCcccccccccccccccCcccccccccHHHH-hhcCCCCcHHHHHHHHHHcCCC-cccccccCCHH--HHHHHHHHHHH
Q 022663           90 SGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHM-IFGVEGSDPVRRERLIELLDID-LQWRMHKVSDG--QRRRVQICMGL  165 (294)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~LSgG--qkqRv~lAraL  165 (294)
                      .   .+..+.           +.++.++..++ .++.   ......++++.+++. .+..+. ||+|  |+||++||++|
T Consensus       110 ~---~~v~q~-----------~~~~~ltv~D~~g~~~---~~~~~~~~L~~~~L~~~~~~~~-lS~G~~~kqrv~la~aL  171 (413)
T 1tq4_A          110 E---RHPYKH-----------PNIPNVVFWDLPGIGS---TNFPPDTYLEKMKFYEYDFFII-ISATRFKKNDIDIAKAI  171 (413)
T ss_dssp             C---CEEEEC-----------SSCTTEEEEECCCGGG---SSCCHHHHHHHTTGGGCSEEEE-EESSCCCHHHHHHHHHH
T ss_pred             e---EEeccc-----------cccCCeeehHhhcccc---hHHHHHHHHHHcCCCccCCeEE-eCCCCccHHHHHHHHHH
Confidence            0   111110           00111111110 0111   112356778888775 244444 9999  99999999999


Q ss_pred             cc----------CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHH----hc----CcEEEEEeCChhH--HHhhhceEE-Ee
Q 022663          166 LH----------PFKVLLLDEITVDLDVVARMDLLDFFKDECE----QR----GATIVYATHIFDG--LETWATHLA-YI  224 (294)
Q Consensus       166 ~~----------~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~----~~----g~tviivsHd~~~--~~~~~d~v~-~l  224 (294)
                      +.          +|++++|||||+|||+..+.++++.|+++++    +.    ..+|+++||+++.  ++++||++. .|
T Consensus       172 ~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~L  251 (413)
T 1tq4_A          172 SMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDL  251 (413)
T ss_dssp             HHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHS
T ss_pred             HhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhC
Confidence            99          9999999999999999999999999998852    22    3678899999987  999999985 34


Q ss_pred             eCC
Q 022663          225 QDG  227 (294)
Q Consensus       225 ~~G  227 (294)
                      ..|
T Consensus       252 peg  254 (413)
T 1tq4_A          252 PIY  254 (413)
T ss_dssp             CGG
T ss_pred             ccc
Confidence            344

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=99.93  E-value=8.8e-27  Score=195.51  Aligned_cols=80  Identities=13%  Similarity=0.001  Sum_probs=68.6

Q ss_pred             cccccccCCHHHHHHHHHHHH-----HccCCCEEEeeC--CCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEe---CChhH
Q 022663          144 LQWRMHKVSDGQRRRVQICMG-----LLHPFKVLLLDE--ITVDLDVVARMDLLDFFKDECEQRGATIVYAT---HIFDG  213 (294)
Q Consensus       144 ~~~~~~~LSgGqkqRv~lAra-----L~~~p~iLlLDE--Pt~gLD~~~~~~l~~~l~~~~~~~g~tviivs---Hd~~~  213 (294)
                      .++++.+||||||||++||+|     ++.+|++|||||  ||++||+..+..+.+++.+    .+.|+|++|   ||.++
T Consensus        70 ~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~----~~~~~i~~~H~~h~~~~  145 (178)
T 1ye8_A           70 VGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD----PNVNVVATIPIRDVHPL  145 (178)
T ss_dssp             ETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC----TTSEEEEECCSSCCSHH
T ss_pred             ccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc----CCCeEEEEEccCCCchH
Confidence            456788999999999999996     999999999999  9999999999888888764    467788888   59999


Q ss_pred             HHhhhceEEEeeCCeEEe
Q 022663          214 LETWATHLAYIQDGELRR  231 (294)
Q Consensus       214 ~~~~~d~v~~l~~G~i~~  231 (294)
                      +..+|++    .+|+++.
T Consensus       146 ~~~i~~r----~~~~i~~  159 (178)
T 1ye8_A          146 VKEIRRL----PGAVLIE  159 (178)
T ss_dssp             HHHHHTC----TTCEEEE
T ss_pred             HHHHHhc----CCcEEEE
Confidence            9999998    3455544

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=99.92  E-value=4.4e-29  Score=225.72  Aligned_cols=163  Identities=14%  Similarity=0.062  Sum_probs=113.8

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      +|+++||+++|+    .++|+++||+|++|++++|+||||||||||+++|+|++    +|.|......           .
T Consensus       101 ~i~~~~vs~~y~----~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~----~G~I~~~v~q-----------~  161 (305)
T 2v9p_A          101 FFNYQNIELITF----INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL----GGSVLSFANH-----------K  161 (305)
T ss_dssp             HHHHTTCCHHHH----HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH----TCEEECGGGT-----------T
T ss_pred             eEEEEEEEEEcC----hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc----CceEEEEecC-----------c
Confidence            589999999996    36999999999999999999999999999999999976    4555432110           0


Q ss_pred             cccccccccccccccCcccccccccHHHHhhcCCCCcHHHHHHHHHH-cCCCcccccccCCHHHHHHHHHHHHHccCCCE
Q 022663           93 LSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIEL-LDIDLQWRMHKVSDGQRRRVQICMGLLHPFKV  171 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-l~l~~~~~~~~LSgGqkqRv~lAraL~~~p~i  171 (294)
                      ..++......                .++.+.. ... ....+.++. +.-.++  +..||||||||   ||||+.+|+|
T Consensus       162 ~~lf~~ti~~----------------~ni~~~~-~~~-~~~~~~i~~~L~~gld--g~~LSgGqkQR---ARAll~~p~i  218 (305)
T 2v9p_A          162 SHFWLASLAD----------------TRAALVD-DAT-HACWRYFDTYLRNALD--GYPVSIDRKHK---AAVQIKAPPL  218 (305)
T ss_dssp             SGGGGGGGTT----------------CSCEEEE-EEC-HHHHHHHHHTTTGGGG--TCCEECCCSSC---CCCEECCCCE
T ss_pred             cccccccHHH----------------HhhccCc-ccc-HHHHHHHHHHhHccCC--ccCcCHHHHHH---HHHHhCCCCE
Confidence            0000000000                0000100 000 122334444 221123  77999999999   9999999999


Q ss_pred             EEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663          172 LLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL  238 (294)
Q Consensus       172 LlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~  238 (294)
                      ||    |++||+.++..+..               +||++..+ ..||+| +|++|++++.|+++++
T Consensus       219 Ll----Ts~LD~~~~~~i~~---------------ltH~~~~~-~~aD~i-vl~~G~iv~~g~~~el  264 (305)
T 2v9p_A          219 LV----TSNIDVQAEDRYLY---------------LHSRVQTF-RFEQPC-TDESGEQPFNITDADW  264 (305)
T ss_dssp             EE----EESSCSTTCGGGGG---------------GTTTEEEE-ECCCCC-CCC---CCCCCCHHHH
T ss_pred             EE----ECCCCHHHHHHHHH---------------HhCCHHHH-HhCCEE-EEeCCEEEEeCCHHHH
Confidence            99    99999999877752               28998865 589999 9999999999999887

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=99.91  E-value=1.2e-27  Score=205.09  Aligned_cols=169  Identities=12%  Similarity=0.001  Sum_probs=95.7

Q ss_pred             CCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcccccccccccccccC
Q 022663           29 PPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAG  108 (294)
Q Consensus        29 ~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (294)
                      .++++|  .+|++|++++|+||||||||||+|+|+|++..     +.+.+..............+.+..+..        
T Consensus         9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~-----i~~~~~~~~~~~~~~~~~~i~~~~q~~--------   73 (207)
T 1znw_A            9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN-----LHFSVSATTRAPRPGEVDGVDYHFIDP--------   73 (207)
T ss_dssp             ------------CCCEEEEECSTTSSHHHHHHHHHHHSTT-----CEECCCEESSCCCTTCCBTTTBEECCH--------
T ss_pred             CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc-----eEEcccccccCCcccccCCCeeEecCH--------
Confidence            467888  79999999999999999999999999997631     111111000000000001122222111        


Q ss_pred             cccccccccHHHHh------hc---CCCCcHHHHHH-HH---------HHcCCC--cccccccCCHHHHHHHHHHHHHcc
Q 022663          109 EIPLQGDFSAEHMI------FG---VEGSDPVRRER-LI---------ELLDID--LQWRMHKVSDGQRRRVQICMGLLH  167 (294)
Q Consensus       109 ~~~~~~~~~~~~~~------~~---~~~~~~~~~~~-~l---------~~l~l~--~~~~~~~LSgGqkqRv~lAraL~~  167 (294)
                        ..+..++..+.+      +.   ..........+ +.         +.+++.  .++++.+||           +|+.
T Consensus        74 --~~~~~~~~~~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS-----------~l~~  140 (207)
T 1znw_A           74 --TRFQQLIDQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVT-----------VFLA  140 (207)
T ss_dssp             --HHHHHHHHTTCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEE-----------EEEE
T ss_pred             --HHHHHHHhcCCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEE-----------EEEE
Confidence              001111111000      00   00111111111 11         122221  245566777           8999


Q ss_pred             CCCEEEeeCCCCCC----CHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEee
Q 022663          168 PFKVLLLDEITVDL----DVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQ  225 (294)
Q Consensus       168 ~p~iLlLDEPt~gL----D~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~  225 (294)
                      +|++++|||||+++    |+..+..+.+++.++.++.|.|+|+||||++++..+||+|++|.
T Consensus       141 ~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~  202 (207)
T 1znw_A          141 PPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT  202 (207)
T ss_dssp             CSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred             CCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence            99999999999998    78899999999999876668999999999999999999999885

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=99.91  E-value=4.9e-24  Score=196.05  Aligned_cols=79  Identities=24%  Similarity=0.317  Sum_probs=70.5

Q ss_pred             ccccccCCHHHHH------HHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhh
Q 022663          145 QWRMHKVSDGQRR------RVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWA  218 (294)
Q Consensus       145 ~~~~~~LSgGqkq------Rv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~  218 (294)
                      ++++.+|||||||      |+++|++|+.+|++|||||||+|||+..+..++++|.++.. .|.|||+||||.+ +..+|
T Consensus       243 ~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~~vi~~sH~~~-~~~~~  320 (339)
T 3qkt_A          243 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK-KIPQVILVSHDEE-LKDAA  320 (339)
T ss_dssp             EECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGG-GSSEEEEEESCGG-GGGGC
T ss_pred             cCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEEChHH-HHHhC
Confidence            4568899999999      67888888999999999999999999999999999998754 4789999999965 56789


Q ss_pred             ceEEEee
Q 022663          219 THLAYIQ  225 (294)
Q Consensus       219 d~v~~l~  225 (294)
                      |++++|+
T Consensus       321 d~~~~l~  327 (339)
T 3qkt_A          321 DHVIRIS  327 (339)
T ss_dssp             SEEEEEE
T ss_pred             CEEEEEE
Confidence            9999986

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=99.91  E-value=1.1e-24  Score=201.40  Aligned_cols=85  Identities=26%  Similarity=0.242  Sum_probs=76.1

Q ss_pred             cccc-cCCHHHHHHHHHHHHHc---------cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHH
Q 022663          146 WRMH-KVSDGQRRRVQICMGLL---------HPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLE  215 (294)
Q Consensus       146 ~~~~-~LSgGqkqRv~lAraL~---------~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~  215 (294)
                      +++. .||||||||++||++|+         .+|+||||||||++||+..+..+++.|.++    +.|+|++||+ +.  
T Consensus       260 ~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~----~qt~i~~th~-~~--  332 (359)
T 2o5v_A          260 FPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASV----PQAIVTGTEL-AP--  332 (359)
T ss_dssp             EEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHS----SEEEEEESSC-CT--
T ss_pred             cchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhc----CcEEEEEEec-cc--
Confidence            4566 79999999999999999         899999999999999999999999998764    2699999994 43  


Q ss_pred             hhhceEEEeeCCeEEecccHHHH
Q 022663          216 TWATHLAYIQDGELRRAEKLAEL  238 (294)
Q Consensus       216 ~~~d~v~~l~~G~i~~~g~~~~~  238 (294)
                       .||++++|++|+++..|+++++
T Consensus       333 -~~~~i~~l~~G~i~~~g~~~~~  354 (359)
T 2o5v_A          333 -GAALTLRAQAGRFTPVADEEMQ  354 (359)
T ss_dssp             -TCSEEEEEETTEEEECCCTTTS
T ss_pred             -cCCEEEEEECCEEEecCCHHHH
Confidence             8999999999999999988764

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=99.90  E-value=8.1e-27  Score=201.74  Aligned_cols=183  Identities=9%  Similarity=-0.045  Sum_probs=98.3

Q ss_pred             CceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccc-cccCCcccccccccccccccC
Q 022663           30 PLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQL-VCSGDLSYLGGSWSKTVGSAG  108 (294)
Q Consensus        30 ~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  108 (294)
                      .-|+||||+|++|++++|+||||||||||+++|+|++ |   |.+.+ +.+....... .....+.+.++..........
T Consensus        11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p---G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   85 (218)
T 1z6g_A           11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P---NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLK   85 (218)
T ss_dssp             -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T---TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHH
T ss_pred             ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C---CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhh
Confidence            4689999999999999999999999999999999976 4   55665 4432110000 000112222111000000000


Q ss_pred             cccccccccHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHHHHHH-----HHHHccCCCEEEeeCCCCCCCH
Q 022663          109 EIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQI-----CMGLLHPFKVLLLDEITVDLDV  183 (294)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv~l-----AraL~~~p~iLlLDEPt~gLD~  183 (294)
                      +..+....+.....++   ......+++++...+..  ...+|||||+||++|     |++|+.+|++++|||||+++|.
T Consensus        86 ~~~~l~~~~~~~~~~g---~~~~~i~~~l~~~~~~i--l~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~  160 (218)
T 1z6g_A           86 NEDFLEYDNYANNFYG---TLKSEYDKAKEQNKICL--FEMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNT  160 (218)
T ss_dssp             TTCEEEEEEETTEEEE---EEHHHHHHHHHTTCEEE--EEECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCC
T ss_pred             ccchhhhhhcccccCC---CcHHHHHHHHhCCCcEE--EEecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCC
Confidence            0000000000000111   12233455555433211  115799999999999     8999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHh------cCcEEEEEeCChhHHHhhhceEE
Q 022663          184 VARMDLLDFFKDECEQ------RGATIVYATHIFDGLETWATHLA  222 (294)
Q Consensus       184 ~~~~~l~~~l~~~~~~------~g~tviivsHd~~~~~~~~d~v~  222 (294)
                      .+...+.+.|.+..++      .....|+++||++++...+++++
T Consensus       161 ~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea~~~~~~ii  205 (218)
T 1z6g_A          161 ENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLTLTYQQLKNYL  205 (218)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHHHHHHHHHHHH
Confidence            9998998888776543      23445555555555555544443

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.90  E-value=6.4e-25  Score=213.02  Aligned_cols=153  Identities=15%  Similarity=0.046  Sum_probs=113.6

Q ss_pred             eEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcccccccccccccccCccccccc
Q 022663           36 NLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGD  115 (294)
Q Consensus        36 sl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (294)
                      +..|.+|++++|+||||||||||+++++|...+.+...+.+.......               .+....           
T Consensus       275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~---------------~l~~~~-----------  328 (525)
T 1tf7_A          275 GGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRA---------------QLLRNA-----------  328 (525)
T ss_dssp             TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHH---------------HHHHHH-----------
T ss_pred             CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHH---------------HHHHHH-----------
Confidence            458999999999999999999999999997766422223322221100               000000           


Q ss_pred             ccHHHHhhcCCCCcHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHH-----HHHH
Q 022663          116 FSAEHMIFGVEGSDPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVV-----ARMD  188 (294)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~-----~~~~  188 (294)
                           ..++   .+.   .++ ..+++.  .+.++.+|||||+||+++|+++..+|++||+| ||++||..     .+..
T Consensus       329 -----~~~g---~~~---~~~-~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~  395 (525)
T 1tf7_A          329 -----YSWG---MDF---EEM-ERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQF  395 (525)
T ss_dssp             -----HTTS---CCH---HHH-HHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHH
T ss_pred             -----HHcC---CCH---HHH-HhCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHH
Confidence                 0011   111   111 123332  35678899999999999999999999999999 99999999     9999


Q ss_pred             HHHHHHHHHHhcCcEEEEEeCCh----------hHHHhhhceEEEeeCCe
Q 022663          189 LLDFFKDECEQRGATIVYATHIF----------DGLETWATHLAYIQDGE  228 (294)
Q Consensus       189 l~~~l~~~~~~~g~tviivsHd~----------~~~~~~~d~v~~l~~G~  228 (294)
                      +.+++..++ +.|.|||++||+.          ..+..+||+|++|++|+
T Consensus       396 i~~ll~~l~-~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge  444 (525)
T 1tf7_A          396 VIGVTGYAK-QEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE  444 (525)
T ss_dssp             HHHHHHHHH-HTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred             HHHHHHHHH-hCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence            999998765 5699999999999          78888999999999886

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=99.90  E-value=2.6e-24  Score=193.80  Aligned_cols=179  Identities=17%  Similarity=0.198  Sum_probs=113.5

Q ss_pred             CceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCc-eE-EecCCcccccccccccCCcccccccccccc-cc
Q 022663           30 PLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRD-VV-QVLNRSSFHDTQLVCSGDLSYLGGSWSKTV-GS  106 (294)
Q Consensus        30 ~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g-~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  106 (294)
                      ++|+++++.|++|++++|+||||||||||++.|+|...+. .| .+ .+.+.....               .....+ ..
T Consensus        23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~-~G~~v~~~~~e~~~~---------------~~~~r~~~~   86 (296)
T 1cr0_A           23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTA-MGKKVGLAMLEESVE---------------ETAEDLIGL   86 (296)
T ss_dssp             TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHT-SCCCEEEEESSSCHH---------------HHHHHHHHH
T ss_pred             HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH-cCCeEEEEeCcCCHH---------------HHHHHHHHH
Confidence            5799999999999999999999999999999999988775 33 34 332221100               000000 00


Q ss_pred             cCcccc--cccccHHHHhhcCCCCc-HHHHHHHHHHcCCCcccccccCCHHH-HHHHHHHHHHccCCCEEEeeCCCC---
Q 022663          107 AGEIPL--QGDFSAEHMIFGVEGSD-PVRRERLIELLDIDLQWRMHKVSDGQ-RRRVQICMGLLHPFKVLLLDEITV---  179 (294)
Q Consensus       107 ~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~l~~l~l~~~~~~~~LSgGq-kqRv~lAraL~~~p~iLlLDEPt~---  179 (294)
                      .....+  ...+....+    .... ......+++...+.....+..+|.++ +||+. |+++..+|++||+||||+   
T Consensus        87 ~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~l~~~~l~i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~  161 (296)
T 1cr0_A           87 HNRVRLRQSDSLKREII----ENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVS  161 (296)
T ss_dssp             HTTCCGGGCHHHHHHHH----HHTHHHHHHHHHHSSSCEEEECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC----
T ss_pred             HcCCChhhccccccCCC----CHHHHHHHHHHHhccCCEEEECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCC
Confidence            000000  000000000    0000 01122222222333334456789998 66666 999999999999999999   


Q ss_pred             C---CCH-HHHHHHHHHHHHHHHhcCcEEEEEeCCh--h--------------------HHHhhhceEEEeeCCeE
Q 022663          180 D---LDV-VARMDLLDFFKDECEQRGATIVYATHIF--D--------------------GLETWATHLAYIQDGEL  229 (294)
Q Consensus       180 g---LD~-~~~~~l~~~l~~~~~~~g~tviivsHd~--~--------------------~~~~~~d~v~~l~~G~i  229 (294)
                      +   +|. .....+.+.|++++++.|+|||++||+.  +                    .+..+||+|++|++|+.
T Consensus       162 ~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~  237 (296)
T 1cr0_A          162 ASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ  237 (296)
T ss_dssp             -------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence            5   455 6677899999999887899999999995  5                    78889999999999875

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=99.90  E-value=2.7e-26  Score=211.47  Aligned_cols=199  Identities=15%  Similarity=0.143  Sum_probs=134.2

Q ss_pred             cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663           11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS   90 (294)
Q Consensus        11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~   90 (294)
                      .++++++++++.|+.  +..+++++ |+|.+|++++|+||||||||||+++|+|+..++ .|.+.+.|.+...-..    
T Consensus        43 ~~~i~~~~l~~~~~t--g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~-~g~i~~~G~~~~ev~~----  114 (347)
T 2obl_A           43 PDPLLRQVIDQPFIL--GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASAD-IIVLALIGERGREVNE----  114 (347)
T ss_dssp             SCSTTCCCCCSEECC--SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCS-EEEEEEESCCHHHHHH----
T ss_pred             CCCeeecccceecCC--CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCC-EEEEEEecccHHHHHH----
Confidence            357999999999973  25699999 999999999999999999999999999988776 7777777754211000    


Q ss_pred             CCcccccc-cccccccccCcccccccccHHHHhhcCCCCcHHHHHHHHHHc---CCC---cccccccCCHHHHHHHHHHH
Q 022663           91 GDLSYLGG-SWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELL---DID---LQWRMHKVSDGQRRRVQICM  163 (294)
Q Consensus        91 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l---~l~---~~~~~~~LSgGqkqRv~lAr  163 (294)
                       .+.+... .....+.+..+..   .........      ......+.+.+   +..   .-..+.+||+|| |||++| 
T Consensus       115 -~i~~~~~~~~~~~v~~~~~~~---~~~~~r~~~------~~~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~la-  182 (347)
T 2obl_A          115 -FLALLPQSTLSKCVLVVTTSD---RPALERMKA------AFTATTIAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLA-  182 (347)
T ss_dssp             -HHTTSCHHHHTTEEEEEECTT---SCHHHHHHH------HHHHHHHHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHH-
T ss_pred             -HHHhhhhhhhhceEEEEECCC---CCHHHHHHH------HHHHHHHHHHHHhccccHHHHHhhHHHHHHHH-HHHHHH-
Confidence             0000000 0001111111000   000000000      00000111111   111   114678999999 899999 


Q ss_pred             HHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHH-hcCc-----EEEEEeCChhHHHhhhceEEEeeCCeEEecccHHH
Q 022663          164 GLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECE-QRGA-----TIVYATHIFDGLETWATHLAYIQDGELRRAEKLAE  237 (294)
Q Consensus       164 aL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~-~~g~-----tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~  237 (294)
                        +.+|++      |+|||+..+..+.+++.++.+ +.|.     ||+++|||++  ..+||++++|.+|+|+.++++++
T Consensus       183 --l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~--~~i~d~v~~i~dG~Ivl~~~l~~  252 (347)
T 2obl_A          183 --SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN--DPIGDEVRSILDGHIVLTRELAE  252 (347)
T ss_dssp             --TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--CHHHHHHHHHCSEEEEBCHHHHT
T ss_pred             --cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--ChhhhheEEeeCcEEEEeCCHHH
Confidence              688887      999999999999999988753 3477     9999999999  77999999999999999988876


Q ss_pred             HH
Q 022663          238 LD  239 (294)
Q Consensus       238 ~~  239 (294)
                      +.
T Consensus       253 ~~  254 (347)
T 2obl_A          253 EN  254 (347)
T ss_dssp             TT
T ss_pred             cC
Confidence            53

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=99.90  E-value=9.5e-26  Score=206.71  Aligned_cols=133  Identities=17%  Similarity=0.197  Sum_probs=103.0

Q ss_pred             ceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcccccccccccccccCcc
Q 022663           31 LFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEI  110 (294)
Q Consensus        31 iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (294)
                      +++++||+|++|++++|+||||||||||+++|+|++.|+ .|.+.+.+.....           .  ......++     
T Consensus       160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~-~g~i~i~~~~e~~-----------~--~~~~~~i~-----  220 (330)
T 2pt7_A          160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE-ERIISIEDTEEIV-----------F--KHHKNYTQ-----  220 (330)
T ss_dssp             HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTT-SCEEEEESSCCCC-----------C--SSCSSEEE-----
T ss_pred             HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCC-CcEEEECCeeccc-----------c--ccchhEEE-----
Confidence            789999999999999999999999999999999998876 8888877643110           0  00000000     


Q ss_pred             cccccccHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHH
Q 022663          111 PLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLL  190 (294)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~  190 (294)
                       +                                   ...  |||+||++||+||..+|++|||||||+.       +++
T Consensus       221 -~-----------------------------------~~g--gg~~~r~~la~aL~~~p~ilildE~~~~-------e~~  255 (330)
T 2pt7_A          221 -L-----------------------------------FFG--GNITSADCLKSCLRMRPDRIILGELRSS-------EAY  255 (330)
T ss_dssp             -E-----------------------------------ECB--TTBCHHHHHHHHTTSCCSEEEECCCCST-------HHH
T ss_pred             -E-----------------------------------EeC--CChhHHHHHHHHhhhCCCEEEEcCCChH-------HHH
Confidence             0                                   000  8999999999999999999999999982       356


Q ss_pred             HHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeE
Q 022663          191 DFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL  229 (294)
Q Consensus       191 ~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i  229 (294)
                      ++|..+. ..+.|+|+++|+.+ +...|||+++|.+|..
T Consensus       256 ~~l~~~~-~g~~tvi~t~H~~~-~~~~~dri~~l~~g~~  292 (330)
T 2pt7_A          256 DFYNVLC-SGHKGTLTTLHAGS-SEEAFIRLANMSSSNS  292 (330)
T ss_dssp             HHHHHHH-TTCCCEEEEEECSS-HHHHHHHHHHHHHTSG
T ss_pred             HHHHHHh-cCCCEEEEEEcccH-HHHHhhhheehhcCCc
Confidence            6676653 32357999999999 7778999999998864

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=99.90  E-value=6.4e-24  Score=218.87  Aligned_cols=169  Identities=15%  Similarity=0.156  Sum_probs=114.3

Q ss_pred             cccEEEcc-----eEEEcCCCCCCCceeeeeEEEeC-------CCEEEEECCCCCcHHHHHHHHhCCcccC-CCceEEec
Q 022663           11 LNSIKVCG-----MQFSYEGNDKPPLFYDFNLGISP-------GSRCLLVGANGSGKTTLLKILAGKHMVG-GRDVVQVL   77 (294)
Q Consensus        11 ~~~l~~~~-----ls~~y~~~~~~~iL~~vsl~i~~-------Ge~~~liG~NGsGKSTLlk~i~G~~~~~-~~g~i~~~   77 (294)
                      .++|++++     |++.|.+  +..+++|++|++++       |++++|+||||||||||||+| |++.+- ..|     
T Consensus       748 ~~~l~i~~~rHP~l~~~~~~--~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~aqiG-----  819 (1022)
T 2o8b_B          748 PPFLELKGSRHPCITKTFFG--DDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVMAQMG-----  819 (1022)
T ss_dssp             CCCEEEEEECCCC------C--CCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHHHTTT-----
T ss_pred             CceEEEEeccccEEEEEecC--CceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHHhhee-----
Confidence            34799999     9999943  25799999999987       999999999999999999999 976431 000     


Q ss_pred             CCcccccccccccCCcccccccccccccccCcccccccccHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHH
Q 022663           78 NRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRR  157 (294)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkq  157 (294)
                                      .++++... .+      .....      ++..-+.. +           ......+++|+++++
T Consensus       820 ----------------~~Vpq~~~-~l------~v~d~------I~~rig~~-d-----------~~~~~~stf~~em~~  858 (1022)
T 2o8b_B          820 ----------------CYVPAEVC-RL------TPIDR------VFTRLGAS-D-----------RIMSGESTFFVELSE  858 (1022)
T ss_dssp             ----------------CCEESSEE-EE------CCCSB------EEEECC---------------------CHHHHHHHH
T ss_pred             ----------------EEeccCcC-CC------CHHHH------HHHHcCCH-H-----------HHhhchhhhHHHHHH
Confidence                            01111100 00      00000      00000000 0           011234577887775


Q ss_pred             HHHHHHHHccCCCEEEeeCCCCCCCHHHH-HHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEE
Q 022663          158 RVQICMGLLHPFKVLLLDEITVDLDVVAR-MDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELR  230 (294)
Q Consensus       158 Rv~lAraL~~~p~iLlLDEPt~gLD~~~~-~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~  230 (294)
                       +++|++++.+|+++||||||+|+|+... ..++++|..+.++.|.++|++||+++++..+||++.++ +|++.
T Consensus       859 -~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~  930 (1022)
T 2o8b_B          859 -TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMA  930 (1022)
T ss_dssp             -HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEE
T ss_pred             -HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEE
Confidence             9999999999999999999999999875 45788888776545899999999999999999999886 47776

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=99.89  E-value=1.2e-25  Score=213.19  Aligned_cols=202  Identities=14%  Similarity=0.122  Sum_probs=137.7

Q ss_pred             ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663           12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG   91 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~   91 (294)
                      ++++++++++.|+.  +..+|+++ |+|.+|++++|+||||||||||+++|+|+..++ .|.+.+.|.....-.... ..
T Consensus       130 ~~l~~~~v~~~~~t--g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~-~G~i~~~G~r~~ev~~~~-~~  204 (438)
T 2dpy_A          130 NPLQRTPIEHVLDT--GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRAD-VIVVGLIGERGREVKDFI-EN  204 (438)
T ss_dssp             CTTTSCCCCSBCCC--SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCS-EEEEEEESCCHHHHHHHH-HT
T ss_pred             CceEEeccceecCC--CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCC-eEEEEEeceecHHHHHHH-Hh
Confidence            57999999999973  25699999 999999999999999999999999999988776 788888886311000000 00


Q ss_pred             CcccccccccccccccCc--ccccccccHHHHhhcCCCCcHHHHHHHHHHcCCC---cccccccCCHHHHHHHHHHHHHc
Q 022663           92 DLSYLGGSWSKTVGSAGE--IPLQGDFSAEHMIFGVEGSDPVRRERLIELLDID---LQWRMHKVSDGQRRRVQICMGLL  166 (294)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~---~~~~~~~LSgGqkqRv~lAraL~  166 (294)
                      ..  ....+.+.+.++++  .+....++..+....        ..+....-+..   .-..+..||+|| |||+||   +
T Consensus       205 ~~--~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~--------~ae~~~~~~~~v~~~ld~l~~lS~g~-qrvslA---l  270 (438)
T 2dpy_A          205 IL--GPDGRARSVVIAAPADVSPLLRMQGAAYATR--------IAEDFRDRGQHVLLIMDSLTRYAMAQ-REIALA---I  270 (438)
T ss_dssp             TT--HHHHHHTEEEEEECTTSCHHHHHHHHHHHHH--------HHHHHHTTTCEEEEEEECHHHHHHHH-HHHHHH---T
T ss_pred             hc--cccccCceEEEEECCCCCHHHHHHHHHHHHH--------HHHHHHhCCCCHHHHHHhHHHHHHHH-HHHHHH---h
Confidence            00  00011122233222  111222222211100        00111110110   112367899999 999999   8


Q ss_pred             cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHH---hcCc-----EEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663          167 HPFKVLLLDEITVDLDVVARMDLLDFFKDECE---QRGA-----TIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL  238 (294)
Q Consensus       167 ~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~---~~g~-----tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~  238 (294)
                      .+|++      |+|||+..+..+.+++.++.+   +.|.     ||+++|||++  ..+||++++|.+|+++..+++.++
T Consensus       271 ~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~--~~iad~v~~l~dG~Ivl~~~~~~~  342 (438)
T 2dpy_A          271 GEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ--DPIADSARAILDGHIVLSRRLAEA  342 (438)
T ss_dssp             TCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC--CHHHHHHHHHSSEEEEECHHHHHT
T ss_pred             CCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc--chhhceEEEEeCcEEEEeCCHHHc
Confidence            88888      999999999999999988754   2364     9999999999  678999999999999999888776


Q ss_pred             HH
Q 022663          239 DE  240 (294)
Q Consensus       239 ~~  240 (294)
                      ..
T Consensus       343 ~~  344 (438)
T 2dpy_A          343 GH  344 (438)
T ss_dssp             TC
T ss_pred             cC
Confidence            44

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=99.89  E-value=4.2e-25  Score=199.98  Aligned_cols=177  Identities=20%  Similarity=0.184  Sum_probs=118.3

Q ss_pred             eeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcccccccc--cccccccCc
Q 022663           32 FYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSW--SKTVGSAGE  109 (294)
Q Consensus        32 L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  109 (294)
                      ++++||++++|++++|+||||||||||+++|+|++.+. +|.+.+.+.+.+.....   ...    ..+  +..++++.+
T Consensus        90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~-~g~V~l~g~d~~r~~a~---~ql----~~~~~~~~i~~v~q  161 (302)
T 3b9q_A           90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE-GTKVLMAAGDTFRAAAS---DQL----EIWAERTGCEIVVA  161 (302)
T ss_dssp             CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEECCCCSCHHHH---HHH----HHHHHHHTCEEECC
T ss_pred             ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc-CCeEEEEeecccchhHH---HHH----HHHHHhcCceEEEe
Confidence            46789999999999999999999999999999998886 78888888765321000   000    001  112233222


Q ss_pred             c-c-ccccccHHHHh-hcC-CCCcHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHHHccCCC--EEEeeCCCCCC
Q 022663          110 I-P-LQGDFSAEHMI-FGV-EGSDPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMGLLHPFK--VLLLDEITVDL  181 (294)
Q Consensus       110 ~-~-~~~~~~~~~~~-~~~-~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL~~~p~--iLlLDEPt~gL  181 (294)
                      . . ..+..+..+.+ +.. ...+    ..+++.+++.  .++++.+||   +||++||||++.+|+  +|+|| ||+||
T Consensus       162 ~~~~~~~~~~v~e~l~~~~~~~~d----~~lldt~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsgl  233 (302)
T 3b9q_A          162 EGDKAKAATVLSKAVKRGKEEGYD----VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGL  233 (302)
T ss_dssp             C--CCCHHHHHHHHHHHHHHTTCS----EEEECCCCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGG
T ss_pred             cCCccCHHHHHHHHHHHHHHcCCc----chHHhcCCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCc
Confidence            1 1 22222222221 110 0000    0122333442  346778999   999999999999999  99999 99999


Q ss_pred             CHHHHHHHHHHHHHHHHhcCcEEEEEeC---------ChhHHHhhhceEEEeeCCeEE
Q 022663          182 DVVARMDLLDFFKDECEQRGATIVYATH---------IFDGLETWATHLAYIQDGELR  230 (294)
Q Consensus       182 D~~~~~~l~~~l~~~~~~~g~tviivsH---------d~~~~~~~~d~v~~l~~G~i~  230 (294)
                      |+..+      +.++.++.|.|+|++||         .+..+..++..|.++..|+.+
T Consensus       234 D~~~~------~~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~~  285 (302)
T 3b9q_A          234 NMLPQ------AREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV  285 (302)
T ss_dssp             GGHHH------HHHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred             CHHHH------HHHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCCh
Confidence            99754      23444456899999999         566777788899999999753

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=99.89  E-value=2e-23  Score=213.06  Aligned_cols=168  Identities=13%  Similarity=0.088  Sum_probs=113.1

Q ss_pred             cEEEcceEEEcCC--CCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhC--------CcccCCCceEEecCCccc
Q 022663           13 SIKVCGMQFSYEG--NDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAG--------KHMVGGRDVVQVLNRSSF   82 (294)
Q Consensus        13 ~l~~~~ls~~y~~--~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G--------~~~~~~~g~i~~~~~~~~   82 (294)
                      .|.+++...-+-.  .+...+++|++|++++|++++|+||||||||||||+|++        ...|.....         
T Consensus       631 ~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~---------  701 (934)
T 3thx_A          631 RIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE---------  701 (934)
T ss_dssp             EEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE---------
T ss_pred             ceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc---------
Confidence            3555554433311  012468899999999999999999999999999999943        222210000         


Q ss_pred             ccccccccCCcccccccccccccccCcccccccccHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHHHHHHH
Q 022663           83 HDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQIC  162 (294)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv~lA  162 (294)
                                           ++.+..  ++..                        +++ .+.....+|+|+++++.+|
T Consensus       702 ---------------------~~~~d~--i~~~------------------------ig~-~d~l~~~lStf~~e~~~~a  733 (934)
T 3thx_A          702 ---------------------VSIVDC--ILAR------------------------VGA-GDSQLKGVSTFMAEMLETA  733 (934)
T ss_dssp             ---------------------EECCSE--EEEE------------------------CC----------CHHHHHHHHHH
T ss_pred             ---------------------chHHHH--HHHh------------------------cCc-hhhHHHhHhhhHHHHHHHH
Confidence                                 000000  0000                        000 0112346788888888888


Q ss_pred             HHH--ccCCCEEEeeCCCCCCCHHHHHHH-HHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663          163 MGL--LHPFKVLLLDEITVDLDVVARMDL-LDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL  238 (294)
Q Consensus       163 raL--~~~p~iLlLDEPt~gLD~~~~~~l-~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~  238 (294)
                      +++  +.+|+++||||||+|||+.....+ +.++..+.++.|.++|++||+.+++ .+||++..+.+|++...++.+++
T Consensus       734 ~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~-~lad~~~~v~ng~v~~~~~~~~l  811 (934)
T 3thx_A          734 SILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELT-ALANQIPTVNNLHVTALTTEETL  811 (934)
T ss_dssp             HHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGG-GGGGTCTTEEEEEEEEEEETTEE
T ss_pred             HHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHH-HHhcccceeEeeEEEEEecCCcE
Confidence            888  999999999999999999998888 5566655544589999999997755 68999999999998876655543

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.88  E-value=6.8e-25  Score=212.83  Aligned_cols=183  Identities=16%  Similarity=0.162  Sum_probs=117.3

Q ss_pred             cccEEEcceEEEcCCCCCCCceeeeeE-EEeCCCEEEEECCCCCcHHHHHHH--HhCCcccCCCceEEecCCcccccccc
Q 022663           11 LNSIKVCGMQFSYEGNDKPPLFYDFNL-GISPGSRCLLVGANGSGKTTLLKI--LAGKHMVGGRDVVQVLNRSSFHDTQL   87 (294)
Q Consensus        11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl-~i~~Ge~~~liG~NGsGKSTLlk~--i~G~~~~~~~g~i~~~~~~~~~~~~~   87 (294)
                      .++++.+++.+..++   .++|++|+| .|++|++++|+||||||||||+++  ++|+..|+ .|.+.+.+.+...... 
T Consensus        10 ~~~~~~~~~~~~~~g---~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~-~g~i~v~g~~~~~~~~-   84 (525)
T 1tf7_A           10 NNNSEHQAIAKMRTM---IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFD-EPGVFVTFEETPQDII-   84 (525)
T ss_dssp             ----CCSSCCEECCC---CTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHC-CCEEEEESSSCHHHHH-
T ss_pred             CCCccccccccccCC---chhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCC-CCEEEEEEeCCHHHHH-
Confidence            346777778765544   579999999 999999999999999999999999  68988775 7888888765311000 


Q ss_pred             cccCCcccccccccccccccCcccccccccHHHHhhcCCCCcHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHHH
Q 022663           88 VCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMGL  165 (294)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL  165 (294)
                      .....+.+..+....          ...+..    ..... . ....++++.+++.  .++.+.+||+||          
T Consensus        85 ~~~~~~g~~~q~~~~----------~~~l~~----~~~~~-~-~~~~~~l~~~~l~~~~~~~~~~LS~g~----------  138 (525)
T 1tf7_A           85 KNARSFGWDLAKLVD----------EGKLFI----LDASP-D-PEGQEVVGGFDLSALIERINYAIQKYR----------  138 (525)
T ss_dssp             HHHGGGTCCHHHHHH----------TTSEEE----EECCC-C-SSCCSCCSSHHHHHHHHHHHHHHHHHT----------
T ss_pred             HHHHHcCCChHHhhc----------cCcEEE----EecCc-c-cchhhhhcccCHHHHHHHHHHHHHHcC----------
Confidence            000111221111100          000000    00000 0 0000011111111  234566777764          


Q ss_pred             ccCCCEEEeeCCCC-----CCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHH---------HhhhceEEEeeCCe
Q 022663          166 LHPFKVLLLDEITV-----DLDVVARMDLLDFFKDECEQRGATIVYATHIFDGL---------ETWATHLAYIQDGE  228 (294)
Q Consensus       166 ~~~p~iLlLDEPt~-----gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~---------~~~~d~v~~l~~G~  228 (294)
                         |++++|||||+     +||+..+..+++++..+.+ .|+|||++||+++++         ..+||+|++|++|+
T Consensus       139 ---~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~-~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~~  211 (525)
T 1tf7_A          139 ---ARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQ-IGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNVL  211 (525)
T ss_dssp             ---CSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHH-HTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEEC
T ss_pred             ---CCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHH-CCCEEEEEecCCCCccccccccceeeeeeEEEEEEEEc
Confidence               78999999998     4699999999999998865 599999999999984         56699999999843

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*

Probab=99.88  E-value=1.6e-22  Score=164.36  Aligned_cols=83  Identities=23%  Similarity=0.314  Sum_probs=74.0

Q ss_pred             cccccccCCHHHHHHHHHH------HHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhh
Q 022663          144 LQWRMHKVSDGQRRRVQIC------MGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETW  217 (294)
Q Consensus       144 ~~~~~~~LSgGqkqRv~lA------raL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~  217 (294)
                      .++++.+||||||||++||      |||+.+|++|||||||+|||+.++..+.+.|.++.+ .|.|||+||||.+ +..+
T Consensus        51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiiivsH~~~-~~~~  128 (148)
T 1f2t_B           51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK-KIPQVILVSHDEE-LKDA  128 (148)
T ss_dssp             EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGG-GSSEEEEEESCGG-GGGG
T ss_pred             ccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHc-cCCEEEEEEChHH-HHHh
Confidence            3567899999999999876      899999999999999999999999999999998754 4899999999995 6789


Q ss_pred             hceEEEe--eCCe
Q 022663          218 ATHLAYI--QDGE  228 (294)
Q Consensus       218 ~d~v~~l--~~G~  228 (294)
                      ||++++|  .+|.
T Consensus       129 ~d~ii~l~~~~g~  141 (148)
T 1f2t_B          129 ADHVIRISLENGS  141 (148)
T ss_dssp             CSEEEEEEEETTE
T ss_pred             CCEEEEEEcCCCe
Confidence            9999999  4564

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=99.87  E-value=7e-24  Score=195.81  Aligned_cols=175  Identities=20%  Similarity=0.199  Sum_probs=116.9

Q ss_pred             eeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcccccccc--cccccccCcc
Q 022663           33 YDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSW--SKTVGSAGEI  110 (294)
Q Consensus        33 ~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  110 (294)
                      .++||++++|++++|+||||||||||+++|+|++.+. +|.+.+.+.+.+.....   ...    ..+  +..++++.+.
T Consensus       148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~-~G~V~l~g~D~~r~~a~---eql----~~~~~r~~i~~v~q~  219 (359)
T 2og2_A          148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE-GTKVLMAAGDTFRAAAS---DQL----EIWAERTGCEIVVAE  219 (359)
T ss_dssp             CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEECCCCSCHHHH---HHH----HHHHHHHTCEEECCS
T ss_pred             CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcccc-CCEEEEecccccccchh---HHH----HHHHHhcCeEEEEec
Confidence            4689999999999999999999999999999998876 78888888765321000   000    001  1122332221


Q ss_pred             -c-ccccccHHHHh-hcC-CCCcHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHHHccCCC--EEEeeCCCCCCC
Q 022663          111 -P-LQGDFSAEHMI-FGV-EGSDPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMGLLHPFK--VLLLDEITVDLD  182 (294)
Q Consensus       111 -~-~~~~~~~~~~~-~~~-~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL~~~p~--iLlLDEPt~gLD  182 (294)
                       . ..+..+..+.+ +.. ...+    ..+++.+++.  .++.+.+||   +||++||||++.+|+  +|+|| ||+|||
T Consensus       220 ~~~~~p~~tv~e~l~~~~~~~~d----~~lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD  291 (359)
T 2og2_A          220 GDKAKAATVLSKAVKRGKEEGYD----VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLN  291 (359)
T ss_dssp             SSSCCHHHHHHHHHHHHHHTTCS----EEEEECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGG
T ss_pred             ccccChhhhHHHHHHHHHhCCCH----HHHHHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCC
Confidence             1 22222222221 110 0000    0122333442  345678899   999999999999999  99999 999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCcEEEEEeC---------ChhHHHhhhceEEEeeCCeE
Q 022663          183 VVARMDLLDFFKDECEQRGATIVYATH---------IFDGLETWATHLAYIQDGEL  229 (294)
Q Consensus       183 ~~~~~~l~~~l~~~~~~~g~tviivsH---------d~~~~~~~~d~v~~l~~G~i  229 (294)
                      +..+.      ..+.++.|.|+|++||         .+..+..++..|.++..|+.
T Consensus       292 ~~~~~------~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~  341 (359)
T 2og2_A          292 MLPQA------REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA  341 (359)
T ss_dssp             GHHHH------HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred             HHHHH------HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence            97652      3344456899999999         45667777889999999975

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=99.87  E-value=2.8e-22  Score=204.06  Aligned_cols=144  Identities=11%  Similarity=0.095  Sum_probs=98.0

Q ss_pred             CCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcccccccccccccccC
Q 022663           29 PPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAG  108 (294)
Q Consensus        29 ~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (294)
                      ..|++|++|++++|++++|+||||||||||||+|+++......|..                     .+... ..++.+.
T Consensus       660 ~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~---------------------vpa~~-~~i~~~d  717 (918)
T 3thx_B          660 QYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSY---------------------VPAEE-ATIGIVD  717 (918)
T ss_dssp             SSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCC---------------------BSSSE-EEEECCS
T ss_pred             ceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCcc---------------------ccchh-hhhhHHH
Confidence            5789999999999999999999999999999999874321100100                     00000 0000000


Q ss_pred             cccccccccHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHH
Q 022663          109 EIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMD  188 (294)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~  188 (294)
                        .++..+...              +        ......+.+|+||+|++.|+++ +.+|+++||||||+|||+.....
T Consensus       718 --~i~~~ig~~--------------d--------~l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~  772 (918)
T 3thx_B          718 --GIFTRMGAA--------------D--------NIYKGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIA  772 (918)
T ss_dssp             --EEEEEC--------------------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHH
T ss_pred             --HHHHhCChH--------------H--------HHHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHH
Confidence              000000000              0        1124467899999999999999 89999999999999999999998


Q ss_pred             HH-HHHHHHHHhcCcEEEEEeCChhHHHhhhce
Q 022663          189 LL-DFFKDECEQRGATIVYATHIFDGLETWATH  220 (294)
Q Consensus       189 l~-~~l~~~~~~~g~tviivsHd~~~~~~~~d~  220 (294)
                      +. .++..+.++.|.|+|++|||++++ .+||+
T Consensus       773 i~~~il~~L~~~~g~tvl~vTH~~el~-~l~~~  804 (918)
T 3thx_B          773 IAYATLEYFIRDVKSLTLFVTHYPPVC-ELEKN  804 (918)
T ss_dssp             HHHHHHHHHHHTTCCEEEEECSCGGGG-GHHHH
T ss_pred             HHHHHHHHHHHhcCCeEEEEeCcHHHH-HHHhh
Confidence            87 666666555689999999998765 45654

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=99.86  E-value=5.9e-22  Score=201.48  Aligned_cols=105  Identities=19%  Similarity=0.282  Sum_probs=93.7

Q ss_pred             HHHHcCCC---cccccccCCHHHHHHHHHHHHHccCCC--EEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q 022663          136 LIELLDID---LQWRMHKVSDGQRRRVQICMGLLHPFK--VLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHI  210 (294)
Q Consensus       136 ~l~~l~l~---~~~~~~~LSgGqkqRv~lAraL~~~p~--iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd  210 (294)
                      .+..+++.   +++++.+|||||+|||+|||||+++|+  +|||||||+|||+..+.+++++|+++.+ .|.|||+||||
T Consensus       447 ~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~-~G~TvivVtHd  525 (916)
T 3pih_A          447 FLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRD-LGNTVIVVEHD  525 (916)
T ss_dssp             HHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTT-TTCEEEEECCC
T ss_pred             HHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHh-cCCEEEEEeCC
Confidence            34446663   478899999999999999999999887  9999999999999999999999998864 59999999999


Q ss_pred             hhHHHhhhceEEEe------eCCeEEecccHHHHHHhh
Q 022663          211 FDGLETWATHLAYI------QDGELRRAEKLAELDELR  242 (294)
Q Consensus       211 ~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~~~  242 (294)
                      ++++.. ||+|++|      ++|++++.|+++++....
T Consensus       526 ~~~~~~-aD~ii~lgpgag~~~G~iv~~G~~~e~~~~~  562 (916)
T 3pih_A          526 EEVIRN-ADHIIDIGPGGGTNGGRVVFQGTVDELLKNP  562 (916)
T ss_dssp             HHHHHT-CSEEEEEESSSGGGCSEEEEEECHHHHHHSC
T ss_pred             HHHHHh-CCEEEEEcCCcccCCCEEEEeechhhhhcCc
Confidence            998865 9999999      899999999999987653

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=99.86  E-value=1e-21  Score=169.22  Aligned_cols=172  Identities=16%  Similarity=0.133  Sum_probs=110.9

Q ss_pred             CCceeeeeE-EEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCccccccccccccccc
Q 022663           29 PPLFYDFNL-GISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSA  107 (294)
Q Consensus        29 ~~iL~~vsl-~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (294)
                      .+.|+++.. .+++|++++|+||||||||||++.|++...+. ++.+.+.+.......       +.    ......++.
T Consensus         9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~-~~~v~~~~~~~~~~~-------~~----~~~~~~~~~   76 (235)
T 2w0m_A            9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRD-GDPCIYVTTEESRDS-------II----RQAKQFNWD   76 (235)
T ss_dssp             CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHH-TCCEEEEESSSCHHH-------HH----HHHHHTTCC
T ss_pred             chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHC-CCeEEEEEcccCHHH-------HH----HHHHHhcch
Confidence            457889988 89999999999999999999999999876554 333333322110000       00    000001100


Q ss_pred             CcccccccccHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHHHccCCC--EEEeeCCCCCC--CH
Q 022663          108 GEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFK--VLLLDEITVDL--DV  183 (294)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv~lAraL~~~p~--iLlLDEPt~gL--D~  183 (294)
                      .+.     .....+. ....... .       ++  ........|.++.++...+.+...+|+  +|++||||+.+  |+
T Consensus        77 ~~~-----~~~~~~~-~~~~~~~-~-------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~  140 (235)
T 2w0m_A           77 FEE-----YIEKKLI-IIDALMK-E-------KE--DQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKP  140 (235)
T ss_dssp             CGG-----GBTTTEE-EEECCC--------------CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCG
T ss_pred             HHH-----HhhCCEE-EEecccc-c-------cC--ceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCH
Confidence            000     0000000 0000000 0       00  001122459999998888888888999  99999999888  99


Q ss_pred             HHHHHHHHHHHHHHHhcCcEEEEEeCCh--------hHHHhhhceEEEeeCCe
Q 022663          184 VARMDLLDFFKDECEQRGATIVYATHIF--------DGLETWATHLAYIQDGE  228 (294)
Q Consensus       184 ~~~~~l~~~l~~~~~~~g~tviivsHd~--------~~~~~~~d~v~~l~~G~  228 (294)
                      ..+..+++.|.+++++.|.|||++||+.        ..+..+||+|++|++..
T Consensus       141 ~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~~  193 (235)
T 2w0m_A          141 AMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRMI  193 (235)
T ss_dssp             GGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEEe
Confidence            9999999999999877899999999999        55889999999998653

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=99.85  E-value=2.5e-21  Score=166.83  Aligned_cols=151  Identities=19%  Similarity=0.248  Sum_probs=90.4

Q ss_pred             EEeCCCEEEEECCCCCcHHHHHHHHhCCcccC------CCceEEecCCcccccccccccCCcccccccccccccccCccc
Q 022663           38 GISPGSRCLLVGANGSGKTTLLKILAGKHMVG------GRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIP  111 (294)
Q Consensus        38 ~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~------~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (294)
                      -|++|++++|+||||||||||+++|+|...+.      +.+.+.+.+......                 ..+....+  
T Consensus        21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~-----------------~~i~~~~~--   81 (231)
T 4a74_A           21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRP-----------------ERIREIAQ--   81 (231)
T ss_dssp             SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCH-----------------HHHHHHHH--
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCH-----------------HHHHHHHH--
Confidence            79999999999999999999999999954432      122333333211000                 00000000  


Q ss_pred             ccccccHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCHHHH-HHHHHHHHHcc-------CCCEEEeeCCCCCCCH
Q 022663          112 LQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQR-RRVQICMGLLH-------PFKVLLLDEITVDLDV  183 (294)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqk-qRv~lAraL~~-------~p~iLlLDEPt~gLD~  183 (294)
                              .  +   .....   .+.+.+.     ....++.+++ +.+..+++++.       +|++|++||||+++|+
T Consensus        82 --------~--~---~~~~~---~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~  140 (231)
T 4a74_A           82 --------N--R---GLDPD---EVLKHIY-----VARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRS  140 (231)
T ss_dssp             --------H--T---TSCHH---HHHHTEE-----EEECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHH
T ss_pred             --------H--c---CCCHH---HHhhcEE-----EEecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhcc
Confidence                    0  0   00000   1122111     1223344433 33555555544       9999999999999998


Q ss_pred             HH------------HHHHHHHHHHHHHhcCcEEEEEeCCh----hHHHhhhceEEEeeCCe
Q 022663          184 VA------------RMDLLDFFKDECEQRGATIVYATHIF----DGLETWATHLAYIQDGE  228 (294)
Q Consensus       184 ~~------------~~~l~~~l~~~~~~~g~tviivsHd~----~~~~~~~d~v~~l~~G~  228 (294)
                      ..            ...+++.|.+++++.|.|||++||+.    ..+..+||++++|++|+
T Consensus       141 ~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~  201 (231)
T 4a74_A          141 EYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK  201 (231)
T ss_dssp             HSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred             ccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence            42            23678888888777899999999954    45899999999998753

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=99.84  E-value=1.2e-24  Score=197.93  Aligned_cols=173  Identities=10%  Similarity=0.031  Sum_probs=113.5

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEE-----------------------EeCCCEEEEECCCCCcHHHHHHHHhCCcccC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLG-----------------------ISPGSRCLLVGANGSGKTTLLKILAGKHMVG   69 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~-----------------------i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~   69 (294)
                      .|++++|++.|.     ++++++++.                       +++|+++||+||||||||||+++|+|++.+.
T Consensus        43 ~i~~~~v~~~y~-----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~  117 (312)
T 3aez_A           43 QIDLLEVEEVYL-----PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARW  117 (312)
T ss_dssp             CCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTS
T ss_pred             eEEeeehhhhhh-----hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhcccc
Confidence            689999999994     577777765                       8999999999999999999999999988764


Q ss_pred             CCceEEecCCcccccccccccCCcccccccccccccccCcccccccccHHHHh-h----cCC-CCcHHHHHHHHHHcCCC
Q 022663           70 GRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMI-F----GVE-GSDPVRRERLIELLDID  143 (294)
Q Consensus        70 ~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~-~~~~~~~~~~l~~l~l~  143 (294)
                       .|.     .            .+.++.+..          .+++. +..+.. +    +.. ..+.+...++++.++-.
T Consensus       118 -~G~-----~------------~v~~v~qd~----------~~~~~-t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~~~  168 (312)
T 3aez_A          118 -DHH-----P------------RVDLVTTDG----------FLYPN-AELQRRNLMHRKGFPESYNRRALMRFVTSVKSG  168 (312)
T ss_dssp             -TTC-----C------------CEEEEEGGG----------GBCCH-HHHHHTTCTTCTTSGGGBCHHHHHHHHHHHHTT
T ss_pred             -CCC-----C------------eEEEEecCc----------cCCcc-cHHHHHHHHHhcCCChHHHHHHHHHHHHHhCCC
Confidence             221     0            011111100          00111 111111 0    110 12234556677777632


Q ss_pred             -cccccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHH-HhhhceE
Q 022663          144 -LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGL-ETWATHL  221 (294)
Q Consensus       144 -~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~-~~~~d~v  221 (294)
                       .+.++.+|||||+||+++|++++.+|+|||||||+..+|+..     ..+.   ...+ .+|+|+|+.+.. ..+++|.
T Consensus       169 ~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-----~~l~---~~~D-~~I~V~a~~~~~~~R~i~R~  239 (312)
T 3aez_A          169 SDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-----LMVS---DLFD-FSLYVDARIEDIEQWYVSRF  239 (312)
T ss_dssp             CSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-----CCGG---GGCS-EEEEEEECHHHHHHHHHHHH
T ss_pred             cccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-----HHHH---HhcC-cEEEEECCHHHHHHHHHHHH
Confidence             346788999999999999999999999999999999998522     1122   2233 457778887654 4456776


Q ss_pred             EEeeCCe
Q 022663          222 AYIQDGE  228 (294)
Q Consensus       222 ~~l~~G~  228 (294)
                      +.+.++.
T Consensus       240 ~~~rd~~  246 (312)
T 3aez_A          240 LAMRTTA  246 (312)
T ss_dssp             HHHTTTG
T ss_pred             HHHHhcc
Confidence            6665554

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=99.84  E-value=3.7e-22  Score=177.13  Aligned_cols=142  Identities=12%  Similarity=0.076  Sum_probs=98.8

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      .+++++|++.       ++|+++|  +++|++++|+||||||||||+++|+|++.++.+|.+.+.+.+..          
T Consensus         5 ~~~l~~l~~~-------~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~----------   65 (261)
T 2eyu_A            5 IPEFKKLGLP-------DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE----------   65 (261)
T ss_dssp             -CCGGGSSCC-------THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCC----------
T ss_pred             CCChHHCCCH-------HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcce----------
Confidence            4677888642       4899999  99999999999999999999999999887643677766654321          


Q ss_pred             cccccccccccccccCcccccccccHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHHHccCCCEE
Q 022663           93 LSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVL  172 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv~lAraL~~~p~iL  172 (294)
                        +..+.   ...++.+                            ..+++.    ...|      |++||++|..+|++|
T Consensus        66 --~~~~~---~~~~v~q----------------------------~~~gl~----~~~l------~~~la~aL~~~p~il  102 (261)
T 2eyu_A           66 --YVFKH---KKSIVNQ----------------------------REVGED----TKSF------ADALRAALREDPDVI  102 (261)
T ss_dssp             --SCCCC---SSSEEEE----------------------------EEBTTT----BSCH------HHHHHHHHHHCCSEE
T ss_pred             --eecCC---cceeeeH----------------------------HHhCCC----HHHH------HHHHHHHHhhCCCEE
Confidence              11000   0000000                            011111    1122      899999999999999


Q ss_pred             EeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEee
Q 022663          173 LLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQ  225 (294)
Q Consensus       173 lLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~  225 (294)
                      |+||||   |+.+...++   +. + +.|.+|++++|+.+ +..+|||++.|.
T Consensus       103 llDEp~---D~~~~~~~l---~~-~-~~g~~vl~t~H~~~-~~~~~dri~~l~  146 (261)
T 2eyu_A          103 FVGEMR---DLETVETAL---RA-A-ETGHLVFGTLHTNT-AIDTIHRIVDIF  146 (261)
T ss_dssp             EESCCC---SHHHHHHHH---HH-H-HTTCEEEEEECCSS-HHHHHHHHHHTS
T ss_pred             EeCCCC---CHHHHHHHH---HH-H-ccCCEEEEEeCcch-HHHHHHHHhhhc
Confidence            999999   988865443   32 3 35899999999988 567788876553

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=99.84  E-value=3.7e-21  Score=194.90  Aligned_cols=103  Identities=21%  Similarity=0.258  Sum_probs=92.9

Q ss_pred             HHHcCCC---cccccccCCHHHHHHHHHHHHHccCC--CEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCh
Q 022663          137 IELLDID---LQWRMHKVSDGQRRRVQICMGLLHPF--KVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIF  211 (294)
Q Consensus       137 l~~l~l~---~~~~~~~LSgGqkqRv~lAraL~~~p--~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~  211 (294)
                      +..+++.   +++.+.+|||||+|||+||++|+.+|  ++|||||||+|||+...+.+++.|+++. +.|.|||+||||+
T Consensus       488 L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr-~~G~TVIvVeHdl  566 (972)
T 2r6f_A          488 LQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMR-DLGNTLIVVEHDE  566 (972)
T ss_dssp             HHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHH-TTTCEEEEECCCH
T ss_pred             hhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCH
Confidence            5556764   58899999999999999999999985  9999999999999999999999999985 5699999999999


Q ss_pred             hHHHhhhceEEEe------eCCeEEecccHHHHHHh
Q 022663          212 DGLETWATHLAYI------QDGELRRAEKLAELDEL  241 (294)
Q Consensus       212 ~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~~  241 (294)
                      +++. .||+|++|      ++|++++.|+++++...
T Consensus       567 ~~i~-~ADrIi~LgpgaG~~gG~iv~~G~~~e~~~~  601 (972)
T 2r6f_A          567 DTML-AADYLIDIGPGAGIHGGEVVAAGTPEEVMND  601 (972)
T ss_dssp             HHHH-SCSEEEEECSSSGGGCCSEEEEECTTTTTTC
T ss_pred             HHHH-hCCEEEEeCCCccCCCCEEEEecCHHHHHhh
Confidence            9876 69999999      78999999999887653

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=99.83  E-value=6.2e-22  Score=173.72  Aligned_cols=159  Identities=13%  Similarity=0.024  Sum_probs=87.8

Q ss_pred             CCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcccccccccccccccC
Q 022663           29 PPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAG  108 (294)
Q Consensus        29 ~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (294)
                      +++|+|+||++++|+++||+||||||||||+++|+|++     |.+.++  .        ....+.++++.         
T Consensus        12 ~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l-----G~~~~~--~--------~~~~i~~v~~d---------   67 (245)
T 2jeo_A           12 DLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL-----GQNEVE--Q--------RQRKVVILSQD---------   67 (245)
T ss_dssp             -----------CCSEEEEEECSTTSSHHHHHHHHHHHH-----TGGGSC--G--------GGCSEEEEEGG---------
T ss_pred             ceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh-----chhccc--c--------cCCceEEEeCC---------
Confidence            57999999999999999999999999999999999854     111111  0        00111111111         


Q ss_pred             cccccccccHHHHh-h--cCCC------CcHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHHHccCCCEEEeeCCCC
Q 022663          109 EIPLQGDFSAEHMI-F--GVEG------SDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITV  179 (294)
Q Consensus       109 ~~~~~~~~~~~~~~-~--~~~~------~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~  179 (294)
                        .++..++..++. +  +...      .+.+...+.++.+.-....++..||+||+||+++ ++++.+|+++|||||..
T Consensus        68 --~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~  144 (245)
T 2jeo_A           68 --RFYKVLTAEQKAKALKGQYNFDHPDAFDNDLMHRTLKNIVEGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILV  144 (245)
T ss_dssp             --GGBCCCCHHHHHHHHTTCCCTTSGGGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTT
T ss_pred             --cCccccCHhHhhhhhccCCCCCCcccccHHHHHHHHHHHHCCCCeecccccccccCccCc-eEEecCCCEEEEeCccc
Confidence              111122222211 1  1000      1122233444444223466788999999999988 68889999999999988


Q ss_pred             CCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC-hhHHHhhhceEEEeeCCe
Q 022663          180 DLDVVARMDLLDFFKDECEQRGATIVYATHI-FDGLETWATHLAYIQDGE  228 (294)
Q Consensus       180 gLD~~~~~~l~~~l~~~~~~~g~tviivsHd-~~~~~~~~d~v~~l~~G~  228 (294)
                      ..|..        +.++   .+.+|+++||+ ......+++++   ++|+
T Consensus       145 ~~~~~--------l~~~---~~~~i~v~th~~~~~~r~~~r~~---~~G~  180 (245)
T 2jeo_A          145 FYSQE--------IRDM---FHLRLFVDTDSDVRLSRRVLRDV---RRGR  180 (245)
T ss_dssp             TTSHH--------HHTT---CSEEEEEECCHHHHHHHHHHHHT---C---
T ss_pred             cccHH--------HHHh---cCeEEEEECCHHHHHHHHHHHHH---HcCC
Confidence            88753        1222   37899999997 44445555544   6664

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=99.83  E-value=2e-20  Score=188.79  Aligned_cols=104  Identities=20%  Similarity=0.296  Sum_probs=93.5

Q ss_pred             HHHHcCCC---cccccccCCHHHHHHHHHHHHHccCC--CEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q 022663          136 LIELLDID---LQWRMHKVSDGQRRRVQICMGLLHPF--KVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHI  210 (294)
Q Consensus       136 ~l~~l~l~---~~~~~~~LSgGqkqRv~lAraL~~~p--~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd  210 (294)
                      .+..+++.   +++.+.+|||||+|||+||++|+.+|  .+|||||||++||+...+.++++|+++. +.|.|||+||||
T Consensus       362 ~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~-~~G~TVIvVeHd  440 (842)
T 2vf7_A          362 VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLK-RGGNSLFVVEHD  440 (842)
T ss_dssp             HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHH-TTTCEEEEECCC
T ss_pred             HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHH-HcCCEEEEEcCC
Confidence            45567764   58899999999999999999999999  5999999999999999999999999985 469999999999


Q ss_pred             hhHHHhhhceEEEe------eCCeEEecccHHHHHHh
Q 022663          211 FDGLETWATHLAYI------QDGELRRAEKLAELDEL  241 (294)
Q Consensus       211 ~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~~  241 (294)
                      ++++. .||+|++|      ++|++++.|+++++.+.
T Consensus       441 l~~l~-~aD~ii~lgpgaG~~~G~iv~~g~~~~~~~~  476 (842)
T 2vf7_A          441 LDVIR-RADWLVDVGPEAGEKGGEILYSGPPEGLKHV  476 (842)
T ss_dssp             HHHHT-TCSEEEEECSSSGGGCCSEEEEECGGGGGGC
T ss_pred             HHHHH-hCCEEEEeCCCcccCCCEEEEecCHHHHHhc
Confidence            99765 79999999      79999999999987654

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=99.83  E-value=6.1e-21  Score=192.42  Aligned_cols=155  Identities=15%  Similarity=0.154  Sum_probs=100.9

Q ss_pred             CCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcccccccccccccccC
Q 022663           29 PPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAG  108 (294)
Q Consensus        29 ~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (294)
                      ..+++|++|+ ++|++++|+||||||||||||+|+|+......|..                     .+.. ...++++.
T Consensus       595 ~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~---------------------vpa~-~~~i~~~~  651 (800)
T 1wb9_A          595 PFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSY---------------------VPAQ-KVEIGPID  651 (800)
T ss_dssp             CCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCC---------------------BSSS-EEEECCCC
T ss_pred             ceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCcc---------------------cchh-cccceeHH
Confidence            5689999999 99999999999999999999999996432211110                     0000 00111111


Q ss_pred             cccccccccHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHH
Q 022663          109 EIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMD  188 (294)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~  188 (294)
                      +  ++..+...+.                      .....+.+|+++++ ++.+...+.+|+++|||||++|+|+.....
T Consensus       652 ~--i~~~~~~~d~----------------------l~~~~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~  706 (800)
T 1wb9_A          652 R--IFTRVGAADD----------------------LASGRSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLS  706 (800)
T ss_dssp             E--EEEEEC---------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHH
T ss_pred             H--HHhhCCHHHH----------------------HHhhhhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHH
Confidence            1  1111111100                      01123457777765 444555689999999999999999987777


Q ss_pred             H-HHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEec
Q 022663          189 L-LDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRA  232 (294)
Q Consensus       189 l-~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~  232 (294)
                      + +.++..+.++.|.++|++|||.+++ .+||++..+.+|++...
T Consensus       707 i~~~ll~~l~~~~g~~vl~~TH~~el~-~l~d~~~~v~n~~~~~~  750 (800)
T 1wb9_A          707 LAWACAENLANKIKALTLFATHYFELT-QLPEKMEGVANVHLDAL  750 (800)
T ss_dssp             HHHHHHHHHHHTTCCEEEEECSCGGGG-GHHHHSTTEEEEEEEEE
T ss_pred             HHHHHHHHHHhccCCeEEEEeCCHHHH-HHhhhhhceEEEEEEEE
Confidence            5 6777776543589999999999875 48998877777766543

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=99.82  E-value=1.2e-22  Score=181.03  Aligned_cols=145  Identities=14%  Similarity=0.097  Sum_probs=79.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcccccccccccccccCcccccccccHHHH-h
Q 022663           44 RCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHM-I  122 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  122 (294)
                      .++|+||||||||||+|+|+|+..|+ .|.+.+.|.+.....   ....+.+..+.          ..+...++..+. .
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g~~~~~-~G~i~~~g~~i~~~~---~~~~i~~v~q~----------~~~~~~ltv~d~~~   69 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFKSQVSR-KASSWNREEKIPKTV---EIKAIGHVIEE----------GGVKMKLTVIDTPG   69 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHC-------------CCCCC---SCCEEEESCC--------------CCEEEEECCCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCC-CCccccCCcccCcce---eeeeeEEEeec----------CCCcCCceEEechh
Confidence            48999999999999999999988776 788877775431110   01112222211          111222222111 1


Q ss_pred             hcCC---CCcHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHh
Q 022663          123 FGVE---GSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQ  199 (294)
Q Consensus       123 ~~~~---~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~  199 (294)
                      ++..   ....+....+++.  -..+..+.+|||||+||+++|||++.   +++||||+++||+..    .++++.+.+ 
T Consensus        70 ~g~~~~~~~~~~~i~~~~~~--~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~-  139 (270)
T 3sop_A           70 FGDQINNENCWEPIEKYINE--QYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSK-  139 (270)
T ss_dssp             --CCSBCTTCSHHHHHHHHH--HHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHT-
T ss_pred             hhhhcccHHHHHHHHHHHHH--HHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHh-
Confidence            1111   0111122222220  01245678999999999999999886   999999999999987    344444433 


Q ss_pred             cCcEEEEEeCChhH
Q 022663          200 RGATIVYATHIFDG  213 (294)
Q Consensus       200 ~g~tviivsHd~~~  213 (294)
                      . .+||+|.|..+.
T Consensus       140 ~-~~vI~Vi~K~D~  152 (270)
T 3sop_A          140 V-VNIIPVIAKADT  152 (270)
T ss_dssp             T-SEEEEEETTGGG
T ss_pred             c-CcEEEEEecccc
Confidence            3 789999887653

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=99.82  E-value=1.5e-20  Score=188.56  Aligned_cols=132  Identities=20%  Similarity=0.162  Sum_probs=92.8

Q ss_pred             CCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcc-cCCCceEEecCCcccccccccccCCccccccccccccccc
Q 022663           29 PPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHM-VGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSA  107 (294)
Q Consensus        29 ~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~-~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (294)
                      ..+++|+||+   |++++|+||||||||||||+|+|+.. +. .|.+..      .                ....++++
T Consensus       566 ~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~-~G~~vp------a----------------~~~~i~~v  619 (765)
T 1ewq_A          566 EFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQ-VGSFVP------A----------------EEAHLPLF  619 (765)
T ss_dssp             CCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHT-TTCCBS------S----------------SEEEECCC
T ss_pred             ceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcc-cCceee------h----------------hccceeeH
Confidence            5689999999   99999999999999999999999754 33 333210      0                00011111


Q ss_pred             CcccccccccHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHHH--ccCCCEEEeeCC---CCCCC
Q 022663          108 GEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGL--LHPFKVLLLDEI---TVDLD  182 (294)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv~lAraL--~~~p~iLlLDEP---t~gLD  182 (294)
                      .+  ++..++..+                         .....+|+|+++++.+|+++  +.+|+++|||||   |++||
T Consensus       620 ~~--i~~~~~~~d-------------------------~l~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD  672 (765)
T 1ewq_A          620 DG--IYTRIGASD-------------------------DLAGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLD  672 (765)
T ss_dssp             SE--EEEECCC-------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHH
T ss_pred             HH--hhccCCHHH-------------------------HHHhcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcC
Confidence            11  111111110                         01225799999999999999  999999999999   99999


Q ss_pred             HHHH-HHHHHHHHHHHHhcCcEEEEEeCChhHHHhhh
Q 022663          183 VVAR-MDLLDFFKDECEQRGATIVYATHIFDGLETWA  218 (294)
Q Consensus       183 ~~~~-~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~  218 (294)
                      +.+. ..+++.|.+    .|.|+|++||+.+++. +|
T Consensus       673 ~~~~~~~i~~~L~~----~g~~vl~~TH~~~l~~-~~  704 (765)
T 1ewq_A          673 GVAIATAVAEALHE----RRAYTLFATHYFELTA-LG  704 (765)
T ss_dssp             HHHHHHHHHHHHHH----HTCEEEEECCCHHHHT-CC
T ss_pred             HHHHHHHHHHHHHh----CCCEEEEEeCCHHHHH-hh
Confidence            9876 467777754    4899999999998764 44

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=99.80  E-value=5.5e-19  Score=151.13  Aligned_cols=154  Identities=18%  Similarity=0.202  Sum_probs=102.2

Q ss_pred             CceeeeeE-EEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcccccccccccccccC
Q 022663           30 PLFYDFNL-GISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAG  108 (294)
Q Consensus        30 ~iL~~vsl-~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (294)
                      +.|+.+.. .+++|++++|+||||||||||++.|++  .. +.+.+.+........             ..         
T Consensus         7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~-~~~v~~i~~~~~~~~-------------~~---------   61 (220)
T 2cvh_A            7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LS-GKKVAYVDTEGGFSP-------------ER---------   61 (220)
T ss_dssp             HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HH-CSEEEEEESSCCCCH-------------HH---------
T ss_pred             HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--Hc-CCcEEEEECCCCCCH-------------HH---------
Confidence            45777765 799999999999999999999999998  32 233433322210000             00         


Q ss_pred             cccccccccHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCHHH--HHHHHHHHHHccC-CCEEEeeCCCCCCCHHH
Q 022663          109 EIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQ--RRRVQICMGLLHP-FKVLLLDEITVDLDVVA  185 (294)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGq--kqRv~lAraL~~~-p~iLlLDEPt~gLD~~~  185 (294)
                               ..+... ....+.   +.+++.+      .+.++|+++  +++++.+++++.+ |+++|+||||+.+|+..
T Consensus        62 ---------~~~~~~-~~~~~~---~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~  122 (220)
T 2cvh_A           62 ---------LVQMAE-TRGLNP---EEALSRF------ILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEE  122 (220)
T ss_dssp             ---------HHHHHH-TTTCCH---HHHHHHE------EEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGG
T ss_pred             ---------HHHHHH-hcCCCh---HHHhhcE------EEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcC
Confidence                     000000 000111   1122211      234556654  5688888899986 99999999999999743


Q ss_pred             --------HHHHHHHHHHHHHhcCcEEEEEeCChh-------------HHHhhhceEEEeeCC
Q 022663          186 --------RMDLLDFFKDECEQRGATIVYATHIFD-------------GLETWATHLAYIQDG  227 (294)
Q Consensus       186 --------~~~l~~~l~~~~~~~g~tviivsHd~~-------------~~~~~~d~v~~l~~G  227 (294)
                              ...+++.|++++++.+.|||+++|...             .+..+||++++|++.
T Consensus       123 ~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~  185 (220)
T 2cvh_A          123 NRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL  185 (220)
T ss_dssp             GSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred             chHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence                    244666688887777999999999876             577899999999865

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=99.79  E-value=4.5e-19  Score=158.31  Aligned_cols=152  Identities=18%  Similarity=0.219  Sum_probs=95.3

Q ss_pred             EEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcccccccccccccccCccccccccc
Q 022663           38 GISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFS  117 (294)
Q Consensus        38 ~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (294)
                      .+++|++++|+||||||||||++.+++.+.   .|.+ +.|.....      .+.+.|+..          +... ..+ 
T Consensus        26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~---~g~~-~~g~~~~~------~~~v~~~~~----------e~~~-~~~-   83 (279)
T 1nlf_A           26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA---GGPD-LLEVGELP------TGPVIYLPA----------EDPP-TAI-   83 (279)
T ss_dssp             TEETTSEEEEEESTTSSHHHHHHHHHHHHH---TCCC-TTCCCCCC------CCCEEEEES----------SSCH-HHH-
T ss_pred             CccCCCEEEEEcCCCCCHHHHHHHHHHHHh---cCCC-cCCCccCC------CccEEEEEC----------CCCH-HHH-
Confidence            578999999999999999999999998543   2222 11221100      011111100          0000 000 


Q ss_pred             HHHH-hhcCCCCcHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHHHccCCCEEEeeCCCC--CCCHHHH---HHH
Q 022663          118 AEHM-IFGVEGSDPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITV--DLDVVAR---MDL  189 (294)
Q Consensus       118 ~~~~-~~~~~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~--gLD~~~~---~~l  189 (294)
                      .... ..+. .........+++.+.+.  .++.+..||+||.|++   ++++.+|++||+||||+  ++|....   ..+
T Consensus        84 ~~r~~~~g~-~~~~~~~~~~~~~l~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~  159 (279)
T 1nlf_A           84 HHRLHALGA-HLSAEERQAVADGLLIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQV  159 (279)
T ss_dssp             HHHHHHHHT-TSCHHHHHHHHHHEEECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHH
T ss_pred             HHHHHHHHh-hcChhhhhhccCceEEeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHH
Confidence            0000 0111 11223345566777653  4667889999997765   67888999999999999  9998544   788


Q ss_pred             HHHHHHHHHhcCcEEEEEeCChhHHH
Q 022663          190 LDFFKDECEQRGATIVYATHIFDGLE  215 (294)
Q Consensus       190 ~~~l~~~~~~~g~tviivsHd~~~~~  215 (294)
                      ++.|.+++++.|+|||+++|+.....
T Consensus       160 ~~~L~~l~~~~g~tvi~i~H~~~~~~  185 (279)
T 1nlf_A          160 IGRMEAIAADTGCSIVFLHHASKGAA  185 (279)
T ss_dssp             HHHHHHHHHHHCCEEEEEEEC-----
T ss_pred             HHHHHHHHHHcCCEEEEEecCCCccc
Confidence            88898887777999999999987654

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.78  E-value=1.7e-20  Score=159.46  Aligned_cols=177  Identities=15%  Similarity=0.150  Sum_probs=94.7

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCc-----ccCCCceEEecCCcccccc-c
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKH-----MVGGRDVVQVLNRSSFHDT-Q   86 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~-----~~~~~g~i~~~~~~~~~~~-~   86 (294)
                      +|+++|+++.|+.    +++++  |++.+|.+++|+|+||||||||++.|+|..     .+. .|.....+....... .
T Consensus         3 ~l~~~~~~~~~~~----~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~-~G~~~~~~~~~~~~~~~   75 (210)
T 1pui_A            3 NLNYQQTHFVMSA----PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKT-PGRTQLINLFEVADGKR   75 (210)
T ss_dssp             --------CEEEE----SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC--------------CCEEEEEEETTEE
T ss_pred             chhhhhhhheeec----CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCC-CccceeeEEEEecCCEE
Confidence            5899999999963    57887  899999999999999999999999999976     332 333322110000000 0


Q ss_pred             c-cccCCcc-ccc----ccccccccccCc-ccccccccHHHHhhcCC-CCc--HHHHHHHHHHcCCC---cccccccCCH
Q 022663           87 L-VCSGDLS-YLG----GSWSKTVGSAGE-IPLQGDFSAEHMIFGVE-GSD--PVRRERLIELLDID---LQWRMHKVSD  153 (294)
Q Consensus        87 ~-~~~~~~~-~~~----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~--~~~~~~~l~~l~l~---~~~~~~~LSg  153 (294)
                      . ...+... ...    ..+...+....+ ........   +.+... ...  ......+++..++.   ...++..+|+
T Consensus        76 l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~  152 (210)
T 1pui_A           76 LVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLV---VLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLAS  152 (210)
T ss_dssp             EEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEE---EEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCH
T ss_pred             EEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEE---EEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCc
Confidence            0 0000000 000    000000000000 00000000   000000 011  11233445555554   2566788999


Q ss_pred             HHHHH-HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHh
Q 022663          154 GQRRR-VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQ  199 (294)
Q Consensus       154 GqkqR-v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~  199 (294)
                      ||+|| +..+++++.+|+++++|||||++|.....++++.|.++..+
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~  199 (210)
T 1pui_A          153 GARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSE  199 (210)
T ss_dssp             HHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred             hhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhh
Confidence            99999 89999999999999999999999999999999999887643

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.78  E-value=2e-21  Score=175.85  Aligned_cols=164  Identities=14%  Similarity=0.047  Sum_probs=75.3

Q ss_pred             cceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCC-cccCCCceEEecCCcccccccccccCCccc
Q 022663           17 CGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGK-HMVGGRDVVQVLNRSSFHDTQLVCSGDLSY   95 (294)
Q Consensus        17 ~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~-~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~   95 (294)
                      .||+++|++   +.++++++|+|      +|+||||||||||+++|+|. ..++ +| +.+.|.+......   ...+.+
T Consensus         2 ~~l~~~~~~---~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~-~g-i~~~g~~~~~t~~---~~~~~~   67 (301)
T 2qnr_A            2 SNLPNQVHR---KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPE-RV-ISGAAEKIERTVQ---IEASTV   67 (301)
T ss_dssp             -------------------CEEE------EEEEETTSSHHHHHHHHHC-----------------------------CEE
T ss_pred             CCCcceECC---EEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCC-CC-cccCCcccCCcce---EeeEEE
Confidence            478999975   57999999998      99999999999999999997 5554 45 4443332211000   001111


Q ss_pred             ccccccccccccCcccccccccHHHHh-hcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHHHccCCCEEEe
Q 022663           96 LGGSWSKTVGSAGEIPLQGDFSAEHMI-FGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLL  174 (294)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv~lAraL~~~p~iLlL  174 (294)
                      ..+.          ......++..+.. ++......+....+.+.+.-..+.++.++|||||||+.+|||++    +|++
T Consensus        68 ~~q~----------~~~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~----ll~l  133 (301)
T 2qnr_A           68 EIEE----------RGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHC----CFYF  133 (301)
T ss_dssp             EEC-------------CCEEEEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCE----EEEE
T ss_pred             EecC----------CCcccCcchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhh----eeee
Confidence            1110          0000001100000 00000000000111111110124678899999999999999986    9999


Q ss_pred             eCCCCC-CCHHHHHHHHHHHHHHHHhcCcEEEEEeCChh
Q 022663          175 DEITVD-LDVVARMDLLDFFKDECEQRGATIVYATHIFD  212 (294)
Q Consensus       175 DEPt~g-LD~~~~~~l~~~l~~~~~~~g~tviivsHd~~  212 (294)
                      ||||++ ||+...    ++++++..+.+.++|+++||+.
T Consensus       134 dePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~  168 (301)
T 2qnr_A          134 ISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTL  168 (301)
T ss_dssp             ECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred             ecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence            999985 999873    4555554445789999999974

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=99.77  E-value=5.5e-21  Score=161.63  Aligned_cols=157  Identities=11%  Similarity=0.023  Sum_probs=90.5

Q ss_pred             CCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcccccccccccccccCcccccccccH-HH
Q 022663           42 GSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSA-EH  120 (294)
Q Consensus        42 Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  120 (294)
                      |++++|+||||||||||+++|+|++. + .| +.++|.....         +.    .+...+++..+.. .+.... ..
T Consensus         1 G~~i~i~G~nG~GKTTll~~l~g~~~-~-~G-i~~~g~~~~~---------~~----~~~~~ig~~~~~~-~g~~~~l~~   63 (189)
T 2i3b_A            1 ARHVFLTGPPGVGKTTLIHKASEVLK-S-SG-VPVDGFYTEE---------VR----QGGRRIGFDVVTL-SGTRGPLSR   63 (189)
T ss_dssp             CCCEEEESCCSSCHHHHHHHHHHHHH-H-TT-CCCEEEECCE---------EE----TTSSEEEEEEEET-TSCEEEEEE
T ss_pred             CCEEEEECCCCChHHHHHHHHHhhcc-c-CC-EEEcCEecch---------hH----hhhceEEEEEEec-ccceehhhc
Confidence            78999999999999999999999876 4 56 6665543210         00    0111122111100 000000 00


Q ss_pred             HhhcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHHHH-HHHH---HHccCCCEEEeeC--CCCCCCHHHHHHHHHHHH
Q 022663          121 MIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRV-QICM---GLLHPFKVLLLDE--ITVDLDVVARMDLLDFFK  194 (294)
Q Consensus       121 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv-~lAr---aL~~~p~iLlLDE--Pt~gLD~~~~~~l~~~l~  194 (294)
                      +.+...  +..        ..-...++...+|+||++++ ++++   |++.+|++|||||  |++.+|+.....+.+++.
T Consensus        64 ~~~~~~--~~~--------~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~  133 (189)
T 2i3b_A           64 VGLEPP--PGK--------RECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLS  133 (189)
T ss_dssp             CCCCCC--SSS--------CCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHH
T ss_pred             ccccCC--ccc--------cccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHh
Confidence            000000  000        00012344557999999988 4454   6899999999999  899999977666655553


Q ss_pred             HHHHhcCcEEE----EEeCChhHHHhhhceEEEeeCCeEEec
Q 022663          195 DECEQRGATIV----YATHIFDGLETWATHLAYIQDGELRRA  232 (294)
Q Consensus       195 ~~~~~~g~tvi----ivsHd~~~~~~~~d~v~~l~~G~i~~~  232 (294)
                          . ..++|    .||||..  ..++|+|..+.+|+|+..
T Consensus       134 ----~-~~~~ilgti~vsh~~~--~~~vd~i~~~~~~~i~~~  168 (189)
T 2i3b_A          134 ----T-PGTIILGTIPVPKGKP--LALVEEIRNRKDVKVFNV  168 (189)
T ss_dssp             ----C-SSCCEEEECCCCCSSC--CTTHHHHHTTCCSEEEEC
T ss_pred             ----C-CCcEEEEEeecCCCCc--hHHHHHHeecCCcEEEEe
Confidence                3 33444    3459873  234555555677887764

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=99.75  E-value=4.5e-19  Score=163.78  Aligned_cols=147  Identities=12%  Similarity=0.125  Sum_probs=93.0

Q ss_pred             ceEEEcCCCCCCCceeeeeE-------EEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663           18 GMQFSYEGNDKPPLFYDFNL-------GISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS   90 (294)
Q Consensus        18 ~ls~~y~~~~~~~iL~~vsl-------~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~   90 (294)
                      .++++|-.. ..+.|+++.+       .+.+|++++|+||||||||||+++|+|++.++.++.+...+.+..        
T Consensus        93 ~~~iR~~~~-~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e--------  163 (356)
T 3jvv_A           93 GAVFRTIPS-KVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIE--------  163 (356)
T ss_dssp             EEEEEEECC-SCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCC--------
T ss_pred             EEEEEECCC-CCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHH--------
Confidence            455555321 2345667665       678899999999999999999999999887753444432222110        


Q ss_pred             CCcccccccccccccccCcccccccccHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHHHccCCC
Q 022663           91 GDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFK  170 (294)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv~lAraL~~~p~  170 (294)
                          +...   .....+.+...                                  ....++..+    +||+||.++|+
T Consensus       164 ----~~~~---~~~~~v~q~~~----------------------------------~~~~~~~~~----~La~aL~~~Pd  198 (356)
T 3jvv_A          164 ----FVHE---SKKCLVNQREV----------------------------------HRDTLGFSE----ALRSALREDPD  198 (356)
T ss_dssp             ----SCCC---CSSSEEEEEEB----------------------------------TTTBSCHHH----HHHHHTTSCCS
T ss_pred             ----hhhh---ccccceeeeee----------------------------------ccccCCHHH----HHHHHhhhCcC
Confidence                0000   00000000000                                  000112211    99999999999


Q ss_pred             EEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCC
Q 022663          171 VLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDG  227 (294)
Q Consensus       171 iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G  227 (294)
                      +||+||||   |.+..    +.+.+.+ +.|.+||+++|+.+.+ ..|||++.|..|
T Consensus       199 villDEp~---d~e~~----~~~~~~~-~~G~~vl~t~H~~~~~-~~~dRli~l~~~  246 (356)
T 3jvv_A          199 IILVGEMR---DLETI----RLALTAA-ETGHLVFGTLHTTSAA-KTIDRVVDVFPA  246 (356)
T ss_dssp             EEEESCCC---SHHHH----HHHHHHH-HTTCEEEEEESCSSHH-HHHHHHHHTSCH
T ss_pred             EEecCCCC---CHHHH----HHHHHHH-hcCCEEEEEEccChHH-HHHHHHhhhcCc
Confidence            99999999   66554    3333444 3599999999999977 679999888543

>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*

Probab=99.75  E-value=3.3e-18  Score=142.43  Aligned_cols=82  Identities=20%  Similarity=0.218  Sum_probs=70.0

Q ss_pred             ccccccCCHHHHHHHHHHHHHcc----CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhce
Q 022663          145 QWRMHKVSDGQRRRVQICMGLLH----PFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATH  220 (294)
Q Consensus       145 ~~~~~~LSgGqkqRv~lAraL~~----~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~  220 (294)
                      .+.+..||||||||++||++|+.    +|+++||||||++||+.++..+.++|.++.+  +.++|+|||+... ..+||+
T Consensus        59 ~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~--~~~~ivith~~~~-~~~ad~  135 (173)
T 3kta_B           59 VKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK--ESQFIVITLRDVM-MANADK  135 (173)
T ss_dssp             CCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSEEEEECSCHHH-HTTCSE
T ss_pred             ccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc--CCEEEEEEecHHH-HHhCCE
Confidence            35678999999999999999974    4699999999999999999999999988753  5789999999865 468999


Q ss_pred             EEEe--eCCeE
Q 022663          221 LAYI--QDGEL  229 (294)
Q Consensus       221 v~~l--~~G~i  229 (294)
                      ++.+  .+|..
T Consensus       136 i~~v~~~~g~s  146 (173)
T 3kta_B          136 IIGVSMRDGVS  146 (173)
T ss_dssp             EEEEEEETTEE
T ss_pred             EEEEEecCCEE
Confidence            9865  46653

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=99.75  E-value=1.3e-18  Score=160.36  Aligned_cols=166  Identities=15%  Similarity=0.133  Sum_probs=97.8

Q ss_pred             Cceeee-eEEEeCCCEEEEECCCCCcHHHHHHHHhCCc--ccCC---Cce-EEecCCcccccccccccCCcccccccccc
Q 022663           30 PLFYDF-NLGISPGSRCLLVGANGSGKTTLLKILAGKH--MVGG---RDV-VQVLNRSSFHDTQLVCSGDLSYLGGSWSK  102 (294)
Q Consensus        30 ~iL~~v-sl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~--~~~~---~g~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (294)
                      +.|+.+ ++.|++|++++|+||||||||||++.++|..  .|+.   .|. +++++...+.      ...+.+..+    
T Consensus       118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~------~~~i~~i~q----  187 (349)
T 1pzn_A          118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR------PERIREIAQ----  187 (349)
T ss_dssp             HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCC------HHHHHHHHH----
T ss_pred             HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCC------HHHHHHHHH----
Confidence            356665 6899999999999999999999999999976  3432   244 5555543210      000000000    


Q ss_pred             cccccCcccccccccHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHHHc-------cCCCEEEee
Q 022663          103 TVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLL-------HPFKVLLLD  175 (294)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv~lAraL~-------~~p~iLlLD  175 (294)
                            ...                ....   .+++.+.+.  .  ..-|.+++|++.++++++       .+|++||+|
T Consensus       188 ------~~~----------------~~~~---~v~~ni~~~--~--~~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlD  238 (349)
T 1pzn_A          188 ------NRG----------------LDPD---EVLKHIYVA--R--AFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVD  238 (349)
T ss_dssp             ------TTT----------------CCHH---HHGGGEEEE--E--CCSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEE
T ss_pred             ------HcC----------------CCHH---HHhhCEEEE--e--cCChHHHHHHHHHHHHHHHHhccccCCCCEEEEe
Confidence                  000                0000   111111110  0  012567888888888888       689999999


Q ss_pred             CCCCCCCHHH------------HHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEeccc
Q 022663          176 EITVDLDVVA------------RMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEK  234 (294)
Q Consensus       176 EPt~gLD~~~------------~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~  234 (294)
                      |||++||+..            ..+++..|.+++++.+.|||+++|+.......++.......|++...+.
T Consensus       239 s~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~~  309 (349)
T 1pzn_A          239 SLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSA  309 (349)
T ss_dssp             TSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CCCCCTTC
T ss_pred             CchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceEeecC
Confidence            9999999852            4567777778777789999999999876654444455666677665543

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=99.75  E-value=2e-18  Score=167.02  Aligned_cols=78  Identities=15%  Similarity=0.233  Sum_probs=71.5

Q ss_pred             ccccC-CHHHHHHHHHHHHHccCC--CEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEE
Q 022663          147 RMHKV-SDGQRRRVQICMGLLHPF--KVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAY  223 (294)
Q Consensus       147 ~~~~L-SgGqkqRv~lAraL~~~p--~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~  223 (294)
                      ++.+| ||||+|||+||++|+.+|  ++|||||||+|||+..+..+.++|.++.+  |.|||+||||++.+. +||++++
T Consensus       393 ~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~--~~~vi~itH~~~~~~-~~d~~~~  469 (517)
T 4ad8_A          393 PLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD--TRQVLVVTHLAQIAA-RAHHHYK  469 (517)
T ss_dssp             BSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH--HSEEEEECCCHHHHH-HSSEEEE
T ss_pred             cHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC--CCEEEEEecCHHHHH-hCCEEEE
Confidence            45667 999999999999999999  99999999999999999999999999864  789999999999776 6999999


Q ss_pred             eeCC
Q 022663          224 IQDG  227 (294)
Q Consensus       224 l~~G  227 (294)
                      |+++
T Consensus       470 ~~~~  473 (517)
T 4ad8_A          470 VEKQ  473 (517)
T ss_dssp             EECC
T ss_pred             Eecc
Confidence            9654

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=99.73  E-value=1.4e-20  Score=160.81  Aligned_cols=142  Identities=18%  Similarity=0.148  Sum_probs=96.5

Q ss_pred             EeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcccccccccccccccCcccccccccH
Q 022663           39 ISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSA  118 (294)
Q Consensus        39 i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (294)
                      .++|++++|+||||||||||+++|+|++.+    .+.+...+..            +..            .   ..++.
T Consensus         3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----~i~~v~~d~~------------~~~------------~---~~~~~   51 (211)
T 3asz_A            3 APKPFVIGIAGGTASGKTTLAQALARTLGE----RVALLPMDHY------------YKD------------L---GHLPL   51 (211)
T ss_dssp             --CCEEEEEEESTTSSHHHHHHHHHHHHGG----GEEEEEGGGC------------BCC------------C---TTSCH
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----CeEEEecCcc------------ccC------------c---ccccH
Confidence            578999999999999999999999997543    1111111100            000            0   00011


Q ss_pred             HH-Hh--hcCC-CCcHHHHHHHHHHcCCC--cccccccCCHHH----HHHHHHHHHHccCCCEEEeeCCCCC-------C
Q 022663          119 EH-MI--FGVE-GSDPVRRERLIELLDID--LQWRMHKVSDGQ----RRRVQICMGLLHPFKVLLLDEITVD-------L  181 (294)
Q Consensus       119 ~~-~~--~~~~-~~~~~~~~~~l~~l~l~--~~~~~~~LSgGq----kqRv~lAraL~~~p~iLlLDEPt~g-------L  181 (294)
                      .+ ..  +... ..+.+...++++.+++.  .+.++.++|+||    +||+++|++++.+|+++++||||++       |
T Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~l  131 (211)
T 3asz_A           52 EERLRVNYDHPDAFDLALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFV  131 (211)
T ss_dssp             HHHHHSCTTSGGGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEE
T ss_pred             HHhcCCCCCChhhhhHHHHHHHHHHHHcCCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEE
Confidence            11 00  1100 12234455666666653  456778999996    4788999999999999999999999       9


Q ss_pred             CHHHHHHHHHHHHHHHHhcCcEEEEEeCCh
Q 022663          182 DVVARMDLLDFFKDECEQRGATIVYATHIF  211 (294)
Q Consensus       182 D~~~~~~l~~~l~~~~~~~g~tviivsHd~  211 (294)
                      |+.....+.+.+.+..++.|.|++.++|+.
T Consensus       132 d~~~~~~~~r~l~r~~~~~g~t~~~~~~~~  161 (211)
T 3asz_A          132 DADADERFIRRLKRDVLERGRSLEGVVAQY  161 (211)
T ss_dssp             ECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred             eCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence            999999999998876556689999999985

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=99.71  E-value=1.8e-19  Score=177.40  Aligned_cols=194  Identities=14%  Similarity=0.149  Sum_probs=101.3

Q ss_pred             ccEEEcceEEEcCCCCCCCceeee----------eEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcc
Q 022663           12 NSIKVCGMQFSYEGNDKPPLFYDF----------NLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSS   81 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~~~~iL~~v----------sl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~   81 (294)
                      ++++++||++.|+.. .+++|+.+          +|+++.   ++|+|||||||||||++|+|+..|.++|.+.++|.+.
T Consensus         9 ~~i~~~~l~~~~~~~-~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i   84 (608)
T 3szr_A            9 GSVAENNLCSQYEEK-VRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVL   84 (608)
T ss_dssp             -----------CHHH-HHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEE
T ss_pred             chhhhhhhhHHHHHH-HHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEE
Confidence            368899999999641 12355544          366665   9999999999999999999998774588888777653


Q ss_pred             cccccccccCCcccccccccccccccCc-ccccccccHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHHHHH
Q 022663           82 FHDTQLVCSGDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQ  160 (294)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv~  160 (294)
                      .....    ..    ...++..+++.++ ..+++..+..+.+           ......++...    ..+|   ++++.
T Consensus        85 ~~~~~----~~----~~~~~~~i~~v~Q~~~l~~~~tv~e~i-----------~~~~~~~~~~~----~~~s---~~~i~  138 (608)
T 3szr_A           85 KLKKL----VN----EDKWRGKVSYQDYEIEISDASEVEKEI-----------NKAQNAIAGEG----MGIS---HELIT  138 (608)
T ss_dssp             EEEEC----SS----SSCCEEEESCC---CCCCCHHHHHTTH-----------HHHHHHHHCSS----SCCC---SCCEE
T ss_pred             EEecC----Cc----cccceeEEeeecccccCCCHHHHHHHH-----------HHHHHHhcCCc----cccc---hHHHH
Confidence            11000    00    0112333444433 2222222222111           11111111100    0011   12223


Q ss_pred             HHHHHccCCCEEEeeCC------CCCCCHHHHHHHHHHHHHHHH-hcCcEEEEEeCChhHHH----hh--------hceE
Q 022663          161 ICMGLLHPFKVLLLDEI------TVDLDVVARMDLLDFFKDECE-QRGATIVYATHIFDGLE----TW--------ATHL  221 (294)
Q Consensus       161 lAraL~~~p~iLlLDEP------t~gLD~~~~~~l~~~l~~~~~-~~g~tviivsHd~~~~~----~~--------~d~v  221 (294)
                      ++.+....|+++|+|||      |+|||+..+..+.+++.++.+ ..+.++++++||++.+.    ++        +..|
T Consensus       139 l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI  218 (608)
T 3szr_A          139 LEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTI  218 (608)
T ss_dssp             EEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEE
T ss_pred             HHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceE
Confidence            33334568999999999      999999999999999998654 34788999999987332    22        2457


Q ss_pred             EEeeCCeEEecccH
Q 022663          222 AYIQDGELRRAEKL  235 (294)
Q Consensus       222 ~~l~~G~i~~~g~~  235 (294)
                      +++.++.++..|+.
T Consensus       219 ~VlTK~Dlv~~g~~  232 (608)
T 3szr_A          219 GILTKPDLVDKGTE  232 (608)
T ss_dssp             EEEECGGGSSSSST
T ss_pred             EEecchhhcCcccH
Confidence            88887776665554

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=99.71  E-value=1.7e-16  Score=137.69  Aligned_cols=150  Identities=15%  Similarity=0.290  Sum_probs=84.2

Q ss_pred             EEeCCCEEEEECCCCCcHHHHHHHHhC--Cccc----CCCceEEecCCcccccccccccCCcccccccccccccccCccc
Q 022663           38 GISPGSRCLLVGANGSGKTTLLKILAG--KHMV----GGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIP  111 (294)
Q Consensus        38 ~i~~Ge~~~liG~NGsGKSTLlk~i~G--~~~~----~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (294)
                      -|++|++++|+||||||||||++.|++  ...+    .+.+.+.+.+...+....      +.    .+...        
T Consensus        20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~------~~----~~~~~--------   81 (243)
T 1n0w_A           20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPER------LL----AVAER--------   81 (243)
T ss_dssp             SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHH------HH----HHHHH--------
T ss_pred             CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHH------HH----HHHHH--------
Confidence            589999999999999999999999998  3433    124455444432110000      00    00000        


Q ss_pred             ccccccHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHHH-HHHHHHHc--cCCCEEEeeCCCCCCCHH----
Q 022663          112 LQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRR-VQICMGLL--HPFKVLLLDEITVDLDVV----  184 (294)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqR-v~lAraL~--~~p~iLlLDEPt~gLD~~----  184 (294)
                                 ++   ...   +.+++.+.     ....++..+... +.-+..++  .+|+++++|||++.+|+.    
T Consensus        82 -----------~g---~~~---~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~  139 (243)
T 1n0w_A           82 -----------YG---LSG---SDVLDNVA-----YARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGR  139 (243)
T ss_dssp             -----------TT---CCH---HHHHHTEE-----EEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC------
T ss_pred             -----------cC---CCH---HHHhhCeE-----EEecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCC
Confidence                       00   000   01111111     112344444332 22233333  589999999999999985    


Q ss_pred             ---H-----HHHHHHHHHHHHHhcCcEEEEEeCChhHHHh-------------------hhceEEEeeCC
Q 022663          185 ---A-----RMDLLDFFKDECEQRGATIVYATHIFDGLET-------------------WATHLAYIQDG  227 (294)
Q Consensus       185 ---~-----~~~l~~~l~~~~~~~g~tviivsHd~~~~~~-------------------~~d~v~~l~~G  227 (294)
                         .     ...++..|.+++++.|.|||+++|.......                   +||++++|+++
T Consensus       140 ~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~  209 (243)
T 1n0w_A          140 GELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG  209 (243)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence               2     3456667777777779999999997765443                   79999999875

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.68  E-value=3.9e-18  Score=160.46  Aligned_cols=163  Identities=13%  Similarity=0.083  Sum_probs=85.8

Q ss_pred             ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccC-CCceEEecCCccccccccccc
Q 022663           12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVG-GRDVVQVLNRSSFHDTQLVCS   90 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~-~~g~i~~~~~~~~~~~~~~~~   90 (294)
                      .+|.++||+++|++   +.+++++||+|      +|+||||||||||+++|+|...+. +.+.+.+....          
T Consensus        10 ~~l~~~~l~~~y~~---~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~----------   70 (418)
T 2qag_C           10 GYVGFANLPNQVYR---KSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKK----------   70 (418)
T ss_dssp             -----CCCCCCTTT---TTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC---------------
T ss_pred             CcEEEEecceeECC---EEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCcc----------
Confidence            57999999999975   57999999998      999999999999999999987542 11111110000          


Q ss_pred             CCcccccccccccccccCc-ccccccccHHHH-hhcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHHHccC
Q 022663           91 GDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHM-IFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHP  168 (294)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv~lAraL~~~  168 (294)
                       ...      ...+++..+ ..+...++..+. .++...........+.+.+       -..++.+++||++|||+++.+
T Consensus        71 -t~~------~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i-------~~~~~~~l~qr~~IaRal~~d  136 (418)
T 2qag_C           71 -TVQ------VEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYI-------DSKFEDYLNAESRVNRRQMPD  136 (418)
T ss_dssp             -CCE------EEEEECC------CEEEEEEECC-----------CHHHHHHH-------HHHHHHHTTTSCC-CCCCCCC
T ss_pred             -cee------eeeEEEEEecCCcccceeeeechhhhhhccchhhHHHHHHHH-------HHHHHHHHHHHHHHHHHhccC
Confidence             000      000111111 001111111110 0000000000011111111       124667788999999999999


Q ss_pred             CC---EEEeeCCC-CCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhH
Q 022663          169 FK---VLLLDEIT-VDLDVVARMDLLDFFKDECEQRGATIVYATHIFDG  213 (294)
Q Consensus       169 p~---iLlLDEPt-~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~  213 (294)
                      |+   +|++|||| ++||+...    +++..+. . +.+||+|.|-.+.
T Consensus       137 ~~~~vlL~ldePt~~~L~~~d~----~~lk~L~-~-~v~iIlVinK~Dl  179 (418)
T 2qag_C          137 NRVQCCLYFIAPSGHGLKPLDI----EFMKRLH-E-KVNIIPLIAKADT  179 (418)
T ss_dssp             C-CCEEEEECCC-CCSCCHHHH----HHHHHHT-T-TSEEEEEEESTTS
T ss_pred             CCeeEEEEEecCcccCCCHHHH----HHHHHHh-c-cCcEEEEEEcccC
Confidence            99   99999999 69998763    3444443 2 6788888876553

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=99.68  E-value=1.6e-17  Score=150.31  Aligned_cols=154  Identities=21%  Similarity=0.145  Sum_probs=86.8

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcccccccc--cccccccCcc-ccccccc
Q 022663           41 PGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSW--SKTVGSAGEI-PLQGDFS  117 (294)
Q Consensus        41 ~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~  117 (294)
                      +|++++|+||||||||||+++|+|++.++ +|.+.+.+.+.+....      .... ..+  +..++++++. ...+..+
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~-~g~V~l~g~D~~r~~a------~~ql-~~~~~~~~i~~v~q~~~~~p~~~  172 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL-GKKVMFCAGDTFRAAG------GTQL-SEWGKRLSIPVIQGPEGTDSAAL  172 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHTT-TCCEEEECCCCSSTTT------THHH-HHHHHHHTCCEECCCTTCCHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhc-CCEEEEEeecCCChhH------HHHH-HHHHHhcCceEEEeCCCCCHHHH
Confidence            79999999999999999999999998886 7888888876532110      0000 001  1122222221 1111112


Q ss_pred             HHHHh-hcC-CCCcHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHH
Q 022663          118 AEHMI-FGV-EGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKD  195 (294)
Q Consensus       118 ~~~~~-~~~-~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~  195 (294)
                      ..+.+ +.. ...+    ..+++..+. .+.....++..++||++||||++.+|+.++|     .||+.+...+++.+..
T Consensus       173 v~~~v~~~~~~~~d----~~llDt~G~-~~~~~~~~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~~~~~  242 (304)
T 1rj9_A          173 AYDAVQAMKARGYD----LLFVDTAGR-LHTKHNLMEELKKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLEQAKK  242 (304)
T ss_dssp             HHHHHHHHHHHTCS----EEEECCCCC-CTTCHHHHHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHHHHHH
T ss_pred             HHHHHHHHHhCCCC----EEEecCCCC-CCchHHHHHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHHHHHH
Confidence            21111 000 0000    000011111 1112222444558999999999999994444     4555544556666766


Q ss_pred             HHHhcCcEEEEEeCChh
Q 022663          196 ECEQRGATIVYATHIFD  212 (294)
Q Consensus       196 ~~~~~g~tviivsHd~~  212 (294)
                      +.++.+.|+|++||+.+
T Consensus       243 ~~~~~~~t~iivTh~d~  259 (304)
T 1rj9_A          243 FHEAVGLTGVIVTKLDG  259 (304)
T ss_dssp             HHHHHCCSEEEEECTTS
T ss_pred             HHHHcCCcEEEEECCcc
Confidence            66666899999999854

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=99.67  E-value=2.2e-19  Score=166.54  Aligned_cols=166  Identities=13%  Similarity=0.089  Sum_probs=99.8

Q ss_pred             ceeeeeEEEeC--CCEEEEECCCCCcHHHHHHHHhCCcccCCC----ceEEecCCcccccccccccCCcccccccccccc
Q 022663           31 LFYDFNLGISP--GSRCLLVGANGSGKTTLLKILAGKHMVGGR----DVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTV  104 (294)
Q Consensus        31 iL~~vsl~i~~--Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~----g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (294)
                      +.+.|+++|.+  |++++|+||||||||||+|+|+|++.++ .    |.+.+.+....        ....+....+ ..+
T Consensus       157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~-~~~e~G~i~i~~~~~~--------~~~~~~~~~~-~~I  226 (365)
T 1lw7_A          157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTT-SAWEYGREFVFEKLGG--------DEQAMQYSDY-PQM  226 (365)
T ss_dssp             GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCE-EECCTTHHHHHHSSSS--------CTTSSCTTTH-HHH
T ss_pred             ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCC-cchhhHHHHHHhhcCC--------CcccCChhHH-HHH
Confidence            35679999999  9999999999999999999999987765 3    33322110000        0000000000 001


Q ss_pred             cccCcccccccccHHHHhhcCCCCcHHHHHHHHHHc---CCC-cccccccCCHHHHHHHHHHHHHc-cCCCEEEeeC---
Q 022663          105 GSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELL---DID-LQWRMHKVSDGQRRRVQICMGLL-HPFKVLLLDE---  176 (294)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l---~l~-~~~~~~~LSgGqkqRv~lAraL~-~~p~iLlLDE---  176 (294)
                      .+..+..         ..+         .....+.+   +.. .+..+..+|+|++|+..+++++. .+|+++||||   
T Consensus       227 ~~~~q~~---------~~~---------~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~  288 (365)
T 1lw7_A          227 ALGHQRY---------IDY---------AVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNT  288 (365)
T ss_dssp             HHHHHHH---------HHH---------HHHHCSSEEEESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCC
T ss_pred             HHHHHHH---------HHH---------HHhccCCEEEEeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCC
Confidence            0000000         000         00000000   111 12234456778888888888874 6999999999   


Q ss_pred             CC------CCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEee
Q 022663          177 IT------VDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQ  225 (294)
Q Consensus       177 Pt------~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~  225 (294)
                      |+      .++|+..+..+.+.|.++.++.+.+||+++|. ....++++++.+++
T Consensus       289 p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~~~~r~~~~i~~i~  342 (365)
T 1lw7_A          289 EWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-SYLDRYNQVKAVIE  342 (365)
T ss_dssp             C-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-SHHHHHHHHHHHHH
T ss_pred             CcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHHHH
Confidence            65      58999999999999988876668999999976 45667777766554

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=99.63  E-value=6.1e-16  Score=143.63  Aligned_cols=78  Identities=26%  Similarity=0.348  Sum_probs=68.3

Q ss_pred             cccccCCHHHHHHH------HHHHHHccC-CCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhh
Q 022663          146 WRMHKVSDGQRRRV------QICMGLLHP-FKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWA  218 (294)
Q Consensus       146 ~~~~~LSgGqkqRv------~lAraL~~~-p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~  218 (294)
                      .++..|||||+||+      ++|++|+.+ |++|||||||++||+..+..+.+.|.++.  .+.+||+|||+++ +..+|
T Consensus       276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~--~~~~vi~~th~~~-~~~~~  352 (371)
T 3auy_A          276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK--SIPQMIIITHHRE-LEDVA  352 (371)
T ss_dssp             ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCC--SCSEEEEEESCGG-GGGGC
T ss_pred             cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc--cCCeEEEEEChHH-HHhhC
Confidence            45678999999988      567889999 99999999999999999999999998753  2468999999987 57899


Q ss_pred             ceEEEeeC
Q 022663          219 THLAYIQD  226 (294)
Q Consensus       219 d~v~~l~~  226 (294)
                      |++++|++
T Consensus       353 d~~~~l~k  360 (371)
T 3auy_A          353 DVIINVKK  360 (371)
T ss_dssp             SEEEEEEE
T ss_pred             CEEEEEEe
Confidence            99999973

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=99.62  E-value=1.8e-16  Score=147.30  Aligned_cols=128  Identities=11%  Similarity=0.097  Sum_probs=84.2

Q ss_pred             ceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcccccccccccccccCcc
Q 022663           31 LFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEI  110 (294)
Q Consensus        31 iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (294)
                      +|++++  +++|++++|+||||||||||+++|+|++.+...|.+...+.+..            +.   +...++++.+.
T Consensus       127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e------------~~---~~~~~~~v~Q~  189 (372)
T 2ewv_A          127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE------------YV---FKHKKSIVNQR  189 (372)
T ss_dssp             SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC------------SC---CCCSSSEEEEE
T ss_pred             HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh------------hh---hccCceEEEee
Confidence            455554  78999999999999999999999999887653566654443210            00   00001100000


Q ss_pred             cccccccHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHH
Q 022663          111 PLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLL  190 (294)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~  190 (294)
                                                  .+++    .+..|      +.+|+++|..+|++|++|||+   |+....   
T Consensus       190 ----------------------------~~g~----~~~~~------~~~l~~~L~~~pd~illdE~~---d~e~~~---  225 (372)
T 2ewv_A          190 ----------------------------EVGE----DTKSF------ADALRAALREDPDVIFVGEMR---DLETVE---  225 (372)
T ss_dssp             ----------------------------EBTT----TBSCS------HHHHHHHTTSCCSEEEESCCC---SHHHHH---
T ss_pred             ----------------------------ecCC----CHHHH------HHHHHHHhhhCcCEEEECCCC---CHHHHH---
Confidence                                        0111    12334      469999999999999999999   776543   


Q ss_pred             HHHHHHHHhcCcEEEEEeCChhHHHhhhceEE
Q 022663          191 DFFKDECEQRGATIVYATHIFDGLETWATHLA  222 (294)
Q Consensus       191 ~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~  222 (294)
                      .+++. + ..|.+|+.++|+.+ +...+||++
T Consensus       226 ~~l~~-~-~~g~~vi~t~H~~~-~~~~~~rl~  254 (372)
T 2ewv_A          226 TALRA-A-ETGHLVFGTLHTNT-AIDTIHRIV  254 (372)
T ss_dssp             HHHHH-H-TTTCEEEECCCCCS-HHHHHHHHH
T ss_pred             HHHHH-H-hcCCEEEEEECcch-HHHHHHHHH
Confidence            33433 3 35889999999966 666777764

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=99.61  E-value=1.2e-15  Score=144.17  Aligned_cols=77  Identities=13%  Similarity=0.195  Sum_probs=67.9

Q ss_pred             cccCCHHHHHHHHHHHHHc----cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEE
Q 022663          148 MHKVSDGQRRRVQICMGLL----HPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAY  223 (294)
Q Consensus       148 ~~~LSgGqkqRv~lAraL~----~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~  223 (294)
                      +..||||||||++||++|+    .+|++|||||||++||+..+..+.++|.++.. .+.++|+|||+... ...||+++.
T Consensus       331 ~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~~~ii~th~~~~-~~~~d~~~~  408 (430)
T 1w1w_A          331 MEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN-PDLQFIVISLKNTM-FEKSDALVG  408 (430)
T ss_dssp             GGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB-TTBEEEEECSCHHH-HTTCSEEEE
T ss_pred             cccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhc-CCCEEEEEECCHHH-HHhCCEEEE
Confidence            4569999999999999999    58999999999999999999999999987643 37899999999765 457999999


Q ss_pred             eeC
Q 022663          224 IQD  226 (294)
Q Consensus       224 l~~  226 (294)
                      |..
T Consensus       409 ~~~  411 (430)
T 1w1w_A          409 VYR  411 (430)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            863

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=99.60  E-value=4.9e-16  Score=134.12  Aligned_cols=150  Identities=13%  Similarity=0.109  Sum_probs=81.2

Q ss_pred             eeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCccc-CCCceEEecCCcccccccccccCCcccccccccccccccCcc-c
Q 022663           34 DFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMV-GGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEI-P  111 (294)
Q Consensus        34 ~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~-~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  111 (294)
                      .-.-..++|++++|+||||||||||+++|+|+.+| ...|.+.+.+.....       +        ....+++.++. .
T Consensus         8 ~~~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~-------~--------e~~gi~y~fq~~~   72 (219)
T 1s96_A            8 HHHHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP-------G--------EVHGEHYFFVNHD   72 (219)
T ss_dssp             -------CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT-------T--------CCBTTTBEECCHH
T ss_pred             cccccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc-------c--------cccCceEEECCHH
Confidence            33456899999999999999999999999998764 224444444432110       0        00111111110 0


Q ss_pred             ccccccHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHH
Q 022663          112 LQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLD  191 (294)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~  191 (294)
                      .+..++...              ..++.+..     ...+.|-.+++   +..++..++++|||     ||+.++.++.+
T Consensus        73 ~f~~~~~~~--------------~f~E~~~~-----~~~~yg~~~~~---v~~~l~~G~illLD-----LD~~~~~~i~~  125 (219)
T 1s96_A           73 EFKEMISRD--------------AFLEHAEV-----FGNYYGTSREA---IEQVLATGVDVFLD-----IDWQGAQQIRQ  125 (219)
T ss_dssp             HHHHHHHTT--------------CEEEEEEE-----TTEEEEEEHHH---HHHHHTTTCEEEEE-----CCHHHHHHHHH
T ss_pred             HHHHHHhcC--------------HHHHHHHH-----HhccCCCCHHH---HHHHHhcCCeEEEE-----ECHHHHHHHHH
Confidence            000000000              00000000     00111111221   34455668999999     99999999998


Q ss_pred             HHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHH
Q 022663          192 FFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELD  239 (294)
Q Consensus       192 ~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  239 (294)
                      .+.     .+.||+++||+++++.+   |+  +.+|    .++++++.
T Consensus       126 ~l~-----~~~tI~i~th~~~~l~~---Rl--~~rG----~~~~e~i~  159 (219)
T 1s96_A          126 KMP-----HARSIFILPPSKIELDR---RL--RGRG----QDSEEVIA  159 (219)
T ss_dssp             HCT-----TCEEEEEECSSHHHHHH---HH--HTTS----CSCHHHHH
T ss_pred             Hcc-----CCEEEEEECCCHHHHHH---HH--HHcC----CCCHHHHH
Confidence            775     38899999999998776   43  6666    45666654

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=99.60  E-value=1.1e-14  Score=136.36  Aligned_cols=62  Identities=11%  Similarity=0.202  Sum_probs=48.8

Q ss_pred             cCCCEEEeeCCCCCCCHHHH------------HHHHHHHHHHHHhcCcEEEEEeCCh-------------------hHHH
Q 022663          167 HPFKVLLLDEITVDLDVVAR------------MDLLDFFKDECEQRGATIVYATHIF-------------------DGLE  215 (294)
Q Consensus       167 ~~p~iLlLDEPt~gLD~~~~------------~~l~~~l~~~~~~~g~tviivsHd~-------------------~~~~  215 (294)
                      .+|+++++|||++.+|....            .++++.|.+++++.|.|||+|+|..                   ..+.
T Consensus       272 ~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~  351 (400)
T 3lda_A          272 SRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMA  351 (400)
T ss_dssp             SCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHH
T ss_pred             cCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHH
Confidence            57999999999999997533            5688888888888899999999982                   2356


Q ss_pred             hhhceEEEeeCCe
Q 022663          216 TWATHLAYIQDGE  228 (294)
Q Consensus       216 ~~~d~v~~l~~G~  228 (294)
                      .++|.+++|++++
T Consensus       352 ~~ad~vl~L~~~~  364 (400)
T 3lda_A          352 YSSTTRLGFKKGK  364 (400)
T ss_dssp             HHCSEEEEEEECS
T ss_pred             HhcceEEEEEecC
Confidence            7789999998763

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.60  E-value=3.4e-16  Score=147.04  Aligned_cols=172  Identities=15%  Similarity=0.115  Sum_probs=96.3

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCE--EEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSR--CLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS   90 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~--~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~   90 (294)
                      .|++++ +++|++   .+ |+++||+|++|++  ++|+||||||||||+|+|+|+.. .+..........        ..
T Consensus        16 ~l~~~~-~~~y~~---~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l-~g~~~~~~~~~~--------~~   81 (427)
T 2qag_B           16 TVPLAG-HVGFDS---LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF-EGEPATHTQPGV--------QL   81 (427)
T ss_dssp             -CCCCC-CC-CC-----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC--------CCSSC--------EE
T ss_pred             eEEEee-EEEECC---ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc-cCCcCCCCCccc--------eE
Confidence            577788 889975   45 9999999999999  99999999999999999999742 111000000000        00


Q ss_pred             CCcccccccccccccccCcccccccccHHH-HhhcCCC-----Cc------HHHHHHHHHHc-CCC------ccccc---
Q 022663           91 GDLSYLGGSWSKTVGSAGEIPLQGDFSAEH-MIFGVEG-----SD------PVRRERLIELL-DID------LQWRM---  148 (294)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-----~~------~~~~~~~l~~l-~l~------~~~~~---  148 (294)
                      ..+.+..+..          .++..++..+ ..++...     +.      ......++... ++.      .+.++   
T Consensus        82 ~~i~~v~Q~~----------~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~  151 (427)
T 2qag_B           82 QSNTYDLQES----------NVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVC  151 (427)
T ss_dssp             EEEEEEEEC------------CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEE
T ss_pred             eeEEEEeecC----------ccccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEE
Confidence            0111111110          0001111100 0011000     00      11222333332 221      12221   


Q ss_pred             --------ccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCh
Q 022663          149 --------HKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIF  211 (294)
Q Consensus       149 --------~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~  211 (294)
                              ..|+-.+   +.|+++|..++++|++|||+..|.+.....+.+.+.+..+..|.+|+.+|.|-
T Consensus       152 v~fI~d~~~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~d  219 (427)
T 2qag_B          152 LYFIAPTGHSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTDD  219 (427)
T ss_dssp             EEEECCCC---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC---
T ss_pred             EEEEeCCCCCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCCc
Confidence                    2466555   79999999999999999999999999999999999874556799999999764

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=99.56  E-value=3.4e-16  Score=144.92  Aligned_cols=155  Identities=14%  Similarity=0.055  Sum_probs=103.9

Q ss_pred             EEcceEEE---cCCCCCCCce---------eeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccc
Q 022663           15 KVCGMQFS---YEGNDKPPLF---------YDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSF   82 (294)
Q Consensus        15 ~~~~ls~~---y~~~~~~~iL---------~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~   82 (294)
                      ++++++|+   |+.. ...+|         +++||+|++|++++|+||||||||||+++|+|++.++ .|.+.+.+....
T Consensus       137 ~f~~v~f~~~~Y~~~-~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~-~g~I~ie~~~e~  214 (361)
T 2gza_A          137 FFKHVRPMSKSLTPF-EQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFD-QRLITIEDVPEL  214 (361)
T ss_dssp             TTSCCCCSCSCCCHH-HHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTT-SCEEEEESSSCC
T ss_pred             CcCccccccccccch-hHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCC-ceEEEECCcccc
Confidence            66777777   6420 12344         9999999999999999999999999999999998875 888887654211


Q ss_pred             ccccccccCCcccccccccccccccCcccccccccHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHHHHHHH
Q 022663           83 HDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQIC  162 (294)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv~lA  162 (294)
                      ..             ......++++.                 .   .+               ....++++..++..|+
T Consensus       215 ~~-------------~~~~~~v~~v~-----------------~---q~---------------~~~~~~~~~t~~~~i~  246 (361)
T 2gza_A          215 FL-------------PDHPNHVHLFY-----------------P---SE---------------AKEEENAPVTAATLLR  246 (361)
T ss_dssp             CC-------------TTCSSEEEEEC-----------------C----------------------------CCHHHHHH
T ss_pred             Cc-------------cccCCEEEEee-----------------c---Cc---------------cccccccccCHHHHHH
Confidence            00             00000111000                 0   00               0001245556889999


Q ss_pred             HHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCe
Q 022663          163 MGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGE  228 (294)
Q Consensus       163 raL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~  228 (294)
                      .++..+|+.+++|||..       .++.++|..+. ....|++.++|+.. +...++|+..+..+.
T Consensus       247 ~~l~~~pd~~l~~e~r~-------~~~~~~l~~l~-~g~~~~l~t~H~~~-~~~~~~Rl~~l~~~~  303 (361)
T 2gza_A          247 SCLRMKPTRILLAELRG-------GEAYDFINVAA-SGHGGSITSCHAGS-CELTFERLALMVLQN  303 (361)
T ss_dssp             HHTTSCCSEEEESCCCS-------THHHHHHHHHH-TTCCSCEEEEECSS-HHHHHHHHHHHHTTS
T ss_pred             HHHhcCCCEEEEcCchH-------HHHHHHHHHHh-cCCCeEEEEECCCC-HHHHHHHHHHHHhcc
Confidence            99999999999999985       23455665553 22347899999966 778899999888764

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=99.55  E-value=1.3e-15  Score=126.81  Aligned_cols=47  Identities=15%  Similarity=0.048  Sum_probs=39.7

Q ss_pred             ccCCCEEEeeCCCC-CCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhH
Q 022663          166 LHPFKVLLLDEITV-DLDVVARMDLLDFFKDECEQRGATIVYATHIFDG  213 (294)
Q Consensus       166 ~~~p~iLlLDEPt~-gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~  213 (294)
                      +.+|++|+||||++ ++|+..+..+.+++.... +.++++|++||....
T Consensus        98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~-~~~~~ii~tsn~~~~  145 (180)
T 3ec2_A           98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRY-NNLKSTIITTNYSLQ  145 (180)
T ss_dssp             HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHH-HTTCEEEEECCCCSC
T ss_pred             hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHH-HcCCCEEEEcCCChh
Confidence            34999999999985 999999999999987764 358999999998643

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.55  E-value=7.9e-16  Score=144.64  Aligned_cols=152  Identities=16%  Similarity=0.140  Sum_probs=86.6

Q ss_pred             eeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcccccccccccccccCccc
Q 022663           32 FYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIP  111 (294)
Q Consensus        32 L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (294)
                      -++++|+++.|++++|+|+|||||||||++|+|..+.       +.+......     ...+..+.......+. +.+.+
T Consensus       147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~-------i~~~~ftTl-----~p~~G~V~~~~~~~~~-l~Dtp  213 (416)
T 1udx_A          147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPK-------IAPYPFTTL-----SPNLGVVEVSEEERFT-LADIP  213 (416)
T ss_dssp             EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCE-------ECCCTTCSS-----CCEEEEEECSSSCEEE-EEECC
T ss_pred             EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCcc-------ccCccccee-----cceeeEEEecCcceEE-EEecc
Confidence            4799999999999999999999999999999996321       111110000     0000000000000000 00000


Q ss_pred             -ccccccHHHHhhcCCCCcHHHH------HHHHHHcCCCcccccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHH
Q 022663          112 -LQGDFSAEHMIFGVEGSDPVRR------ERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVV  184 (294)
Q Consensus       112 -~~~~~~~~~~~~~~~~~~~~~~------~~~l~~l~l~~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~  184 (294)
                       +....  .+    .........      +.++..+++. +.++.+||+|++|++++|++|+..|.+|++    |.+|+.
T Consensus       214 Gli~~a--~~----~~~L~~~fl~~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~  282 (416)
T 1udx_A          214 GIIEGA--SE----GKGLGLEFLRHIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLL  282 (416)
T ss_dssp             CCCCCG--GG----SCCSCHHHHHHHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTS
T ss_pred             ccccch--hh----hhhhhHHHHHHHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChh
Confidence             00000  00    000000000      0111222233 466788999999999999999999999999    999998


Q ss_pred             HHHHHHHHHHHHHHhcCcEEEEEe
Q 022663          185 ARMDLLDFFKDECEQRGATIVYAT  208 (294)
Q Consensus       185 ~~~~l~~~l~~~~~~~g~tviivs  208 (294)
                      .. ..++.+.+..++.+.+++++|
T Consensus       283 ~~-~~~~~l~~~l~~~g~~vi~iS  305 (416)
T 1udx_A          283 EE-EAVKALADALAREGLAVLPVS  305 (416)
T ss_dssp             CH-HHHHHHHHHHHTTTSCEEECC
T ss_pred             hH-HHHHHHHHHHHhcCCeEEEEE
Confidence            77 445555555555577777666

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=99.55  E-value=9.5e-18  Score=140.79  Aligned_cols=80  Identities=11%  Similarity=0.059  Sum_probs=61.2

Q ss_pred             CHHHHHHHHHHH------HHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC-hhHHHhhhceEEEe
Q 022663          152 SDGQRRRVQICM------GLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHI-FDGLETWATHLAYI  224 (294)
Q Consensus       152 SgGqkqRv~lAr------aL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd-~~~~~~~~d~v~~l  224 (294)
                      |+|++|++.++.      +++.+|+...+|+   +||+..+.. ++.+..+. +.+.++|.+||. ++.++++||+|+  
T Consensus        96 s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~-~~~~~ii~tsh~~~~~~e~~~~~i~--  168 (189)
T 2bdt_A           96 AKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKG-IDERYFYNTSHLQPTNLNDIVKNLK--  168 (189)
T ss_dssp             HHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTT-CCTTSEEECSSSCGGGHHHHHHHHH--
T ss_pred             hcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcC-CCccEEEeCCCCChhhHHHHHHHHh--
Confidence            889998988888      8889998888884   899988888 88777663 347899999999 999999999998  


Q ss_pred             eCCeEEecccHHHH
Q 022663          225 QDGELRRAEKLAEL  238 (294)
Q Consensus       225 ~~G~i~~~g~~~~~  238 (294)
                      ++|+++..|+++-+
T Consensus       169 ~~g~~~~~~~~~~~  182 (189)
T 2bdt_A          169 TNPRFIFCMAGDPL  182 (189)
T ss_dssp             HCGGGSCC------
T ss_pred             hCCcEEEeecCCch
Confidence            99999999887654

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=99.54  E-value=7.2e-15  Score=119.27  Aligned_cols=44  Identities=14%  Similarity=0.190  Sum_probs=35.5

Q ss_pred             HccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcE-EEEEeCC
Q 022663          165 LLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGAT-IVYATHI  210 (294)
Q Consensus       165 L~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~t-viivsHd  210 (294)
                      ++.+|++|++|||++ ++...+..+++++..+.. .|++ +|++||.
T Consensus        80 ~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~-~g~~~iiits~~  124 (149)
T 2kjq_A           80 AAFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRN-SGKGFLLLGSEY  124 (149)
T ss_dssp             GGGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHH-HTCCEEEEEESS
T ss_pred             HHhCCCEEEEeCccc-cChHHHHHHHHHHHHHHH-cCCcEEEEECCC
Confidence            467899999999998 666668889999987654 4777 8888884

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.47  E-value=1e-15  Score=140.34  Aligned_cols=66  Identities=17%  Similarity=0.093  Sum_probs=57.4

Q ss_pred             ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcc
Q 022663           12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSS   81 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~   81 (294)
                      .+|+++++++.|+.   ..+|+++||++.+|++++|+||||||||||+++|+|++.+. +|.+.+.+.+.
T Consensus        28 ~~ie~~~~~~~~~~---~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~-~g~v~i~~~d~   93 (337)
T 2qm8_A           28 TLAESRRADHRAAV---RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAA-GHKVAVLAVDP   93 (337)
T ss_dssp             HHHTCSSHHHHHHH---HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEEEECG
T ss_pred             HHHeeCCcccccCh---HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhC-CCEEEEEEEcC
Confidence            36889999999964   46899999999999999999999999999999999988776 77777766554

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=99.47  E-value=2.4e-15  Score=131.50  Aligned_cols=48  Identities=21%  Similarity=0.178  Sum_probs=41.8

Q ss_pred             ccccccCCHHHHHHHHHHHHH-ccCCCEEEee----CCCCCCCHHHHHHHHHHHHHHHHh
Q 022663          145 QWRMHKVSDGQRRRVQICMGL-LHPFKVLLLD----EITVDLDVVARMDLLDFFKDECEQ  199 (294)
Q Consensus       145 ~~~~~~LSgGqkqRv~lAraL-~~~p~iLlLD----EPt~gLD~~~~~~l~~~l~~~~~~  199 (294)
                      ++++.+|||    |+   +|+ +.+|++++||    |||++||+..+..+.+.|.++.++
T Consensus       147 ~r~~~~lSg----rv---~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~~  199 (246)
T 2bbw_A          147 RRWIHPPSG----RV---YNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKDV  199 (246)
T ss_dssp             TEEEETTTT----EE---EETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHH
T ss_pred             cCCCcCCCC----Cc---cccccCCCcccccccccccccccCCCCcHHHHHHHHHHHHHh
Confidence            466788999    66   777 9999999999    999999999999999999887543

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=99.46  E-value=6.9e-16  Score=129.26  Aligned_cols=133  Identities=20%  Similarity=0.080  Sum_probs=74.2

Q ss_pred             EEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcccccccccccccccCccccccccc
Q 022663           38 GISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFS  117 (294)
Q Consensus        38 ~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (294)
                      .+++|++++|+||||||||||+++|+|.  ++ .|.+.+++.+......  ....+.+.           .+... ...+
T Consensus         5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~-~g~i~i~~d~~~~~~~--~~~~~~~~-----------~~~~~-~~~~   67 (191)
T 1zp6_A            5 DDLGGNILLLSGHPGSGKSTIAEALANL--PG-VPKVHFHSDDLWGYIK--HGRIDPWL-----------PQSHQ-QNRM   67 (191)
T ss_dssp             -CCTTEEEEEEECTTSCHHHHHHHHHTC--SS-SCEEEECTTHHHHTCC--SSCCCTTS-----------SSHHH-HHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHhc--cC-CCeEEEcccchhhhhh--cccccCCc-----------cchhh-hhHH
Confidence            5789999999999999999999999996  33 6777777654321100  00001111           11000 0111


Q ss_pred             HHHHh-hc-----CCCCcHHHHHHHHHHcCCC----cccccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHH
Q 022663          118 AEHMI-FG-----VEGSDPVRRERLIELLDID----LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARM  187 (294)
Q Consensus       118 ~~~~~-~~-----~~~~~~~~~~~~l~~l~l~----~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~  187 (294)
                      ..+.+ +.     ..... ...+.++..+.+.    .+..+..+|+|++|+++++|++..+|+++        +|+....
T Consensus        68 v~~~l~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~  138 (191)
T 1zp6_A           68 IMQIAADVAGRYAKEGYF-VILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVA  138 (191)
T ss_dssp             HHHHHHHHHHHHHHTSCE-EEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHH
T ss_pred             HHHHHHHHHHHHhccCCe-EEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHH
Confidence            11110 00     00000 0000000000110    13345689999999999999999999876        6888877


Q ss_pred             HHHHHHHHH
Q 022663          188 DLLDFFKDE  196 (294)
Q Consensus       188 ~l~~~l~~~  196 (294)
                      .+++.+..+
T Consensus       139 ~~~~~~~~l  147 (191)
T 1zp6_A          139 DLHSQFADL  147 (191)
T ss_dssp             HHHHHTTCC
T ss_pred             HHHHHHhcc
Confidence            777776554

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=99.45  E-value=9.7e-16  Score=125.68  Aligned_cols=63  Identities=17%  Similarity=0.015  Sum_probs=53.7

Q ss_pred             EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcc
Q 022663           14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSS   81 (294)
Q Consensus        14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~   81 (294)
                      ++..++++.|++   ..+++++||+|++|++++|+||||||||||+|+|+|++ |. .|.+.+.+.+.
T Consensus         8 ~~~~~~~~~~g~---~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~-~G~V~~~g~~i   70 (158)
T 1htw_A            8 IPDEFSMLRFGK---KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GH-QGNVKSPTYTL   70 (158)
T ss_dssp             ECSHHHHHHHHH---HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TC-CSCCCCCTTTC
T ss_pred             cCCHHHHHHHHH---HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CC-CCeEEECCEee
Confidence            445677888864   46899999999999999999999999999999999988 65 78887777654

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=99.42  E-value=2.6e-12  Score=111.17  Aligned_cols=60  Identities=13%  Similarity=0.145  Sum_probs=48.1

Q ss_pred             cCCCEEEeeCCCCCC--CHHHHHHHHHHHHHHHHhcCcEEEEEeCChhH--------HHhhhceEEEeeC
Q 022663          167 HPFKVLLLDEITVDL--DVVARMDLLDFFKDECEQRGATIVYATHIFDG--------LETWATHLAYIQD  226 (294)
Q Consensus       167 ~~p~iLlLDEPt~gL--D~~~~~~l~~~l~~~~~~~g~tviivsHd~~~--------~~~~~d~v~~l~~  226 (294)
                      .+|+++++|+|++.+  |+....+++..|.+++++.|.|||+++|....        +..+||.|+.|+.
T Consensus       127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~  196 (247)
T 2dr3_A          127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL  196 (247)
T ss_dssp             HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred             hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence            579999999999988  66556666667777777789999999998775        5678999999975

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=99.40  E-value=4e-17  Score=157.40  Aligned_cols=177  Identities=14%  Similarity=0.089  Sum_probs=100.9

Q ss_pred             CceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccc-----ccccCCcccccccccc--
Q 022663           30 PLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQ-----LVCSGDLSYLGGSWSK--  102 (294)
Q Consensus        30 ~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~--  102 (294)
                      .+++++++.+++|++++|+||||||||||+++|+|++.++ .|.+.+.+........     ...+..+......+..  
T Consensus       248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~-~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l  326 (511)
T 2oap_1          248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPD-AKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLL  326 (511)
T ss_dssp             HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTT-CCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHH
T ss_pred             HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCC-CCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHH
Confidence            4678899999999999999999999999999999998765 8888887754221100     0000000000000000  


Q ss_pred             --cccccCcccccccccHHHHh------h-cCCC---CcHHHHHHHHHHcCC-----C------cc---cccccCCHHHH
Q 022663          103 --TVGSAGEIPLQGDFSAEHMI------F-GVEG---SDPVRRERLIELLDI-----D------LQ---WRMHKVSDGQR  156 (294)
Q Consensus       103 --~~~~~~~~~~~~~~~~~~~~------~-~~~~---~~~~~~~~~l~~l~l-----~------~~---~~~~~LSgGqk  156 (294)
                        ....-++..+.+.+...+..      . +...   .......++++.|..     .      .+   .....+|+||+
T Consensus       327 ~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~G~~  406 (511)
T 2oap_1          327 RAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRGNTR  406 (511)
T ss_dssp             HTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESSSCE
T ss_pred             HHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeCCCc
Confidence              00000011112222222111      0 1100   000112233333321     1      11   23446899999


Q ss_pred             HHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEE--EeCChhHHHhhhce
Q 022663          157 RRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVY--ATHIFDGLETWATH  220 (294)
Q Consensus       157 qRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tvii--vsHd~~~~~~~~d~  220 (294)
                      ||++++.          + | |+|||+..+..+++.|.++. ..+.|+++  +||+++++...|+.
T Consensus       407 ~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~-~~~~tii~~~~sH~l~ei~~~~g~  459 (511)
T 2oap_1          407 LRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWD-PKEDKHIEVSMPKKLEKMADFLGV  459 (511)
T ss_dssp             EEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEE-TTTTEEEECSCCTHHHHHHHHHTS
T ss_pred             eEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEc-ccCCEEEEcccHHHHHHHHHHcCC
Confidence            9887651          1 7 99999988777777776654 34788875  99999999988863

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=99.40  E-value=1.3e-15  Score=143.44  Aligned_cols=153  Identities=12%  Similarity=0.097  Sum_probs=86.9

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccc----cc
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQ----LV   88 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~----~~   88 (294)
                      .++++++++.|+.   ..+|+++ +. .+|++++|+|||||||||||++|+|++.++ .|.+.+.+.+......    ..
T Consensus       143 ~~~l~~Lg~~~~~---~~~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~~~-~g~I~~~ed~ie~~~~~~~q~~  216 (418)
T 1p9r_A          143 RLDLHSLGMTAHN---HDNFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQELNSS-ERNILTVEDPIEFDIDGIGQTQ  216 (418)
T ss_dssp             CCCGGGSCCCHHH---HHHHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHCCT-TSCEEEEESSCCSCCSSSEEEE
T ss_pred             CCCHHHcCCCHHH---HHHHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcCCC-CCEEEEecccchhccCCcceEE
Confidence            4567777777643   3578888 54 899999999999999999999999988776 6777766654311000    00


Q ss_pred             ccCCccccccc-ccccccccCccccccc----ccHHHHh-hc---------CCCCcHHHHHHHHHHcCCCcccccccCCH
Q 022663           89 CSGDLSYLGGS-WSKTVGSAGEIPLQGD----FSAEHMI-FG---------VEGSDPVRRERLIELLDIDLQWRMHKVSD  153 (294)
Q Consensus        89 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~~~~~-~~---------~~~~~~~~~~~~l~~l~l~~~~~~~~LSg  153 (294)
                      ....+.+.... .+..+...+...+.+.    .+..+.+ +.         ....+.......+..+++.....+..|||
T Consensus       217 v~~~~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~~~~~~LSg  296 (418)
T 1p9r_A          217 VNPRVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFLISSSLLG  296 (418)
T ss_dssp             CBGGGTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHHHHHHHEEE
T ss_pred             EccccCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHHHHHHHHHH
Confidence            00001000000 0000000001111121    2332221 11         11112222233456677764457789999


Q ss_pred             HHHHHHHHHHHHccCCCEEE
Q 022663          154 GQRRRVQICMGLLHPFKVLL  173 (294)
Q Consensus       154 GqkqRv~lAraL~~~p~iLl  173 (294)
                      ||+||  |||+|+.+|+++.
T Consensus       297 g~~QR--LaraL~~~p~~~~  314 (418)
T 1p9r_A          297 VLAQR--LVRTLCPDCKEPY  314 (418)
T ss_dssp             EEEEE--EEEEECTTTCEEE
T ss_pred             HHHHH--hhhhhcCCCCccC
Confidence            99999  9999999999876

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=99.38  E-value=4.4e-15  Score=123.33  Aligned_cols=138  Identities=19%  Similarity=0.173  Sum_probs=75.7

Q ss_pred             CEEEEECCCCCcHHHHHHHHhCCcccCC--CceEEecCCcccccccccccCCccccccccc-cccc----ccCccc-ccc
Q 022663           43 SRCLLVGANGSGKTTLLKILAGKHMVGG--RDVVQVLNRSSFHDTQLVCSGDLSYLGGSWS-KTVG----SAGEIP-LQG  114 (294)
Q Consensus        43 e~~~liG~NGsGKSTLlk~i~G~~~~~~--~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~-~~~  114 (294)
                      ++++|+|+||||||||+++|+|++.+.+  .|.+.+++.+......   .+     ...++ ..++    +..+.. ++ 
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~---~~-----~d~~r~~~ig~~~~~~~~~~~~~-   73 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDK---EG-----KDSWKIYNSGADVVIASPVKLAF-   73 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC--------------------CHHHHHHHHTCEEEEECSSEEEE-
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCc---cc-----hhHHHHHhcCCceEEECCCcEEE-
Confidence            5899999999999999999999888753  6788877765221000   00     00011 1122    111110 00 


Q ss_pred             cccHHHHhhcCCCCcHH--HHHHHHHH-cCCCccccc-ccCCHHHHHHHHHHHHHccCCCEE-------EeeCCCC---C
Q 022663          115 DFSAEHMIFGVEGSDPV--RRERLIEL-LDIDLQWRM-HKVSDGQRRRVQICMGLLHPFKVL-------LLDEITV---D  180 (294)
Q Consensus       115 ~~~~~~~~~~~~~~~~~--~~~~~l~~-l~l~~~~~~-~~LSgGqkqRv~lAraL~~~p~iL-------lLDEPt~---g  180 (294)
                       +.        ......  ...++++. +. ..+..+ ..|||||+||++||||++.+|++.       +-|.|..   -
T Consensus        74 -i~--------~~~~~~~a~l~~~i~~~l~-g~dt~i~EglSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~~~~  143 (171)
T 2f1r_A           74 -IR--------RVSEEEGNDLDWIYERYLS-DYDLVITEGFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGHKW  143 (171)
T ss_dssp             -EE--------ECCHHHHTCHHHHHHHHTT-TCSEEEEESCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSSCE
T ss_pred             -Ee--------cCChhhhhCHHHHHHhhCC-CCCEEEECCcCCCCCcEEEEEecccCCCccCccceEEEEecCCcccCcc
Confidence             00        000011  23344444 43 222222 249999999999999999999873       3355532   2


Q ss_pred             CCHHHHHHHHHHHHHHHHh
Q 022663          181 LDVVARMDLLDFFKDECEQ  199 (294)
Q Consensus       181 LD~~~~~~l~~~l~~~~~~  199 (294)
                      +|......+.+++.+...+
T Consensus       144 f~~~~~~~~a~~i~~~~~~  162 (171)
T 2f1r_A          144 FRRDEVERIAEFILSLLRE  162 (171)
T ss_dssp             ECTTCHHHHHHHHHHHHTC
T ss_pred             cCcccHHHHHHHHHHHHhc
Confidence            3445567888888776654

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=99.36  E-value=1.2e-15  Score=138.91  Aligned_cols=57  Identities=18%  Similarity=-0.050  Sum_probs=46.0

Q ss_pred             ccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhh
Q 022663          149 HKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWA  218 (294)
Q Consensus       149 ~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~  218 (294)
                      .+||+||+||+..+++++.+|+++  |||         ..+.+.|+++.  .+.+|+++||+...+..+.
T Consensus       140 ~~ls~g~~Q~~~ad~ill~k~dl~--de~---------~~l~~~l~~l~--~~~~ii~~sh~~~~~~~l~  196 (318)
T 1nij_A          140 NQFTIAQSQVGYADRILLTKTDVA--GEA---------EKLHERLARIN--ARAPVYTVTHGDIDLGLLF  196 (318)
T ss_dssp             HHCHHHHHHHHTCSEEEEECTTTC--SCT---------HHHHHHHHHHC--SSSCEEECCSSCCCGGGGS
T ss_pred             hhchHHHHHHHhCCEEEEECcccC--CHH---------HHHHHHHHHhC--CCCeEEEecccCCCHHHHh
Confidence            379999999999999999999987  999         67778887753  4789999999765544443

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=99.35  E-value=2.2e-12  Score=116.06  Aligned_cols=142  Identities=18%  Similarity=0.050  Sum_probs=91.3

Q ss_pred             EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCc
Q 022663           14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL   93 (294)
Q Consensus        14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~   93 (294)
                      +.++++++.|+.   ..  ++++|+  +|++++|+|+||+||||+++.|+|.+.+. ++.+.+.+.+....         
T Consensus        77 ~~~~~l~~~~~~---~~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~-~~~v~l~~~d~~~~---------  139 (295)
T 1ls1_A           77 TVYEALKEALGG---EA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK-GRRPLLVAADTQRP---------  139 (295)
T ss_dssp             HHHHHHHHHTTS---SC--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHT-TCCEEEEECCSSCH---------
T ss_pred             HHHHHHHHHHCC---CC--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEecCCcccH---------
Confidence            556788888864   22  788888  99999999999999999999999987665 45555444332100         


Q ss_pred             ccccccccccccccCcccccccccHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHHHccCCCEEE
Q 022663           94 SYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLL  173 (294)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv~lAraL~~~p~iLl  173 (294)
                                            ....            ....+.+..++..-......+..+.+|.+|+.+...+++++|
T Consensus       140 ----------------------~~~~------------ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~~~~~~D~vi  185 (295)
T 1ls1_A          140 ----------------------AARE------------QLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLEARDLIL  185 (295)
T ss_dssp             ----------------------HHHH------------HHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHHHHHTCCEEE
T ss_pred             ----------------------hHHH------------HHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHHHhCCCCEEE
Confidence                                  0000            000112223332100000123344578899999889999999


Q ss_pred             eeCC-CCCCCHHHHHHHHHHHHHHHHhcCcEEEEEe
Q 022663          174 LDEI-TVDLDVVARMDLLDFFKDECEQRGATIVYAT  208 (294)
Q Consensus       174 LDEP-t~gLD~~~~~~l~~~l~~~~~~~g~tviivs  208 (294)
                      +||| +.++|.....++.++.....  ...+++++.
T Consensus       186 iDtpp~~~~d~~~~~~l~~~~~~~~--~~~~~lv~~  219 (295)
T 1ls1_A          186 VDTAGRLQIDEPLMGELARLKEVLG--PDEVLLVLD  219 (295)
T ss_dssp             EECCCCSSCCHHHHHHHHHHHHHHC--CSEEEEEEE
T ss_pred             EeCCCCccccHHHHHHHHHHhhhcC--CCEEEEEEe
Confidence            9999 99999988888777765432  234444444

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=99.34  E-value=3.1e-12  Score=116.69  Aligned_cols=167  Identities=14%  Similarity=0.054  Sum_probs=92.0

Q ss_pred             EEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCccccccccccccc--ccCc-ccccc
Q 022663           38 GISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVG--SAGE-IPLQG  114 (294)
Q Consensus        38 ~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~  114 (294)
                      ..++|++++|+||||||||||+++|+|++.+. +|.+.+.+.+.+....      .... ..+...++  ++.+ ....+
T Consensus       125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~-~g~V~l~g~D~~r~~a------~eql-~~~~~~~gv~~v~q~~~~~p  196 (328)
T 3e70_C          125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNH-GFSVVIAASDTFRAGA------IEQL-EEHAKRIGVKVIKHSYGADP  196 (328)
T ss_dssp             SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEECCSSTTH------HHHH-HHHHHHTTCEEECCCTTCCH
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhc-CCEEEEEeecccccch------HHHH-HHHHHHcCceEEeccccCCH
Confidence            44789999999999999999999999998886 7788877766432110      0000 00111111  1111 11111


Q ss_pred             cccHHHHhhcCCCCcHHHHHHHH-HHcCCC-ccccc--ccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHH
Q 022663          115 DFSAEHMIFGVEGSDPVRRERLI-ELLDID-LQWRM--HKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLL  190 (294)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~l-~~l~l~-~~~~~--~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~  190 (294)
                      ..+..+.+           .... ...+.- .+...  +.-..=+.+.-.+++++..++.+++||.++. .      .+.
T Consensus       197 ~~~v~e~l-----------~~~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~-~------~~~  258 (328)
T 3e70_C          197 AAVAYDAI-----------QHAKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAG-N------AIV  258 (328)
T ss_dssp             HHHHHHHH-----------HHHHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT-T------HHH
T ss_pred             HHHHHHHH-----------HHHHhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHH-H------HHH
Confidence            11111111           0011 111110 11100  0001112233348999998888888885554 3      445


Q ss_pred             HHHHHHHHhcCcEEEEEeCChh---------HHHhhhceEEEeeCCeEE
Q 022663          191 DFFKDECEQRGATIVYATHIFD---------GLETWATHLAYIQDGELR  230 (294)
Q Consensus       191 ~~l~~~~~~~g~tviivsHd~~---------~~~~~~d~v~~l~~G~i~  230 (294)
                      +.++.+.+..+.|+|++||.-+         .+....-.|.++..|+.+
T Consensus       259 ~~~~~~~~~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v  307 (328)
T 3e70_C          259 EQARQFNEAVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGY  307 (328)
T ss_dssp             HHHHHHHHHSCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSST
T ss_pred             HHHHHHHHhcCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCCc
Confidence            5556665567899999999542         334455678888888754

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=99.34  E-value=5.4e-14  Score=126.31  Aligned_cols=126  Identities=13%  Similarity=0.092  Sum_probs=68.7

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhCCcccCC--CceEEecCCcccccccccccCCcccccccccccccccC-cccccccc
Q 022663           40 SPGSRCLLVGANGSGKTTLLKILAGKHMVGG--RDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAG-EIPLQGDF  116 (294)
Q Consensus        40 ~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~--~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  116 (294)
                      .++.+++|+|++|||||||.+.|++.+.+.+  ...+.+...+.+            +........+.+.. ..++..  
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f------------~~~~~~~~~l~~~~~~~~l~~--   94 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDF------------YLTHEDQLKLNEQFKNNKLLQ--   94 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGG------------BCCHHHHHHHHHHTTTCGGGS--
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccc------------cCChHHHHHHhccccccchhh--
Confidence            5688999999999999999999999765421  001111011000            00000000000000 000000  


Q ss_pred             cHHHHhhcC-CCCcHHHHHHHHHHcCCC----------cccccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHH
Q 022663          117 SAEHMIFGV-EGSDPVRRERLIELLDID----------LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVV  184 (294)
Q Consensus       117 ~~~~~~~~~-~~~~~~~~~~~l~~l~l~----------~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~  184 (294)
                           ..+. ...+.....+.++.+...          ...+...+||||+||+++|++...+|+|||+||||+++|+.
T Consensus        95 -----~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~  168 (290)
T 1odf_A           95 -----GRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPI  168 (290)
T ss_dssp             -----SSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCC
T ss_pred             -----hccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEcCCCEEEEeCccccCCcc
Confidence                 0001 112233444455554322          12345689999999999984333399999999999999985

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=99.33  E-value=1.2e-12  Score=124.63  Aligned_cols=49  Identities=27%  Similarity=0.214  Sum_probs=43.3

Q ss_pred             eeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcc
Q 022663           32 FYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSS   81 (294)
Q Consensus        32 L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~   81 (294)
                      -+++||++.+|++++|+|+||||||||+++|+|++.+. +|.+.+.+.+.
T Consensus       283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~-~G~V~l~g~D~  331 (503)
T 2yhs_A          283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQ-GKSVMLAAGDT  331 (503)
T ss_dssp             BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEECCCT
T ss_pred             CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhc-CCeEEEecCcc
Confidence            46899999999999999999999999999999988876 78888766554

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=99.33  E-value=2.3e-12  Score=116.46  Aligned_cols=114  Identities=18%  Similarity=0.225  Sum_probs=77.1

Q ss_pred             eeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcccccccccccccccCccccc
Q 022663           34 DFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQ  113 (294)
Q Consensus        34 ~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (294)
                      .++++..+|++++|+|||||||||+++.|++.+.+. ++.+.+.+.+.+.                              
T Consensus        96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~-g~kV~lv~~D~~r------------------------------  144 (306)
T 1vma_A           96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE-GKSVVLAAADTFR------------------------------  144 (306)
T ss_dssp             CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEECTTC------------------------------
T ss_pred             CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhc-CCEEEEEcccccc------------------------------
Confidence            456777899999999999999999999999987665 4444433322110                              


Q ss_pred             ccccHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHHHH---HHHHHHccCCCEEEeeCCCCCCCHHHHHHHH
Q 022663          114 GDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRV---QICMGLLHPFKVLLLDEITVDLDVVARMDLL  190 (294)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv---~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~  190 (294)
                       . ..           .+....+.+.+++..   +..+|+|+.+++   +|++++..+|+++|+|||..   ......++
T Consensus       145 -~-~a-----------~eqL~~~~~~~gl~~---~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l~  205 (306)
T 1vma_A          145 -A-AA-----------IEQLKIWGERVGATV---ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKKNLM  205 (306)
T ss_dssp             -H-HH-----------HHHHHHHHHHHTCEE---ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHHH
T ss_pred             -H-HH-----------HHHHHHHHHHcCCcE---EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHHH
Confidence             0 00           011223344445432   346789999999   99999999999999999974   33445555


Q ss_pred             HHHHHHH
Q 022663          191 DFFKDEC  197 (294)
Q Consensus       191 ~~l~~~~  197 (294)
                      +.|..+.
T Consensus       206 ~eL~~l~  212 (306)
T 1vma_A          206 EELRKVH  212 (306)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5555543

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=99.32  E-value=4.4e-15  Score=125.99  Aligned_cols=57  Identities=7%  Similarity=-0.048  Sum_probs=43.4

Q ss_pred             HHH-HHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeC
Q 022663          161 ICM-GLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQD  226 (294)
Q Consensus       161 lAr-aL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~  226 (294)
                      .++ +++.+|++++|||||+++|..+...+.+.|....++     +.+.|..    ..+|+|+++++
T Consensus       116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~-----~~~a~~~----~~~D~iivnd~  173 (198)
T 1lvg_A          116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD-----MESSKEP----GLFDLVIINDD  173 (198)
T ss_dssp             CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH-----TTGGGST----TTCSEEEECSS
T ss_pred             CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-----HHHhhcc----CCceEEEECCC
Confidence            456 788889999999999999999999999888776543     2345621    56899887764

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=99.32  E-value=2.6e-15  Score=137.37  Aligned_cols=172  Identities=19%  Similarity=0.139  Sum_probs=100.0

Q ss_pred             ccEEEcceEEEcCCCCCCCceeeeeEEEeCC-------CEEEEECCCCCcHHHHHHHHhCCc----ccCCCceEEecCCc
Q 022663           12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPG-------SRCLLVGANGSGKTTLLKILAGKH----MVGGRDVVQVLNRS   80 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~G-------e~~~liG~NGsGKSTLlk~i~G~~----~~~~~g~i~~~~~~   80 (294)
                      .+++.++++..|++   ..+++++++.+.+|       +.++|+||||+|||||+++|+|.+    .+. +|.+...+.+
T Consensus        17 ~~lr~~~l~~~~g~---~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~-sg~~~~~~~~   92 (334)
T 1in4_A           17 QFLRPKSLDEFIGQ---ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVT-SGPVLVKQGD   92 (334)
T ss_dssp             CTTSCSSGGGCCSC---HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEE-ETTTCCSHHH
T ss_pred             HHcCCccHHHccCc---HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEE-echHhcCHHH
Confidence            46788889888865   46899999999877       899999999999999999999965    221 2221111111


Q ss_pred             ccccccccccCCcccccccccccccccCcccccccccHHHHhhc-C--CC--------CcHHHHHHHHHHcCCC-ccccc
Q 022663           81 SFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFG-V--EG--------SDPVRRERLIELLDID-LQWRM  148 (294)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~--------~~~~~~~~~l~~l~l~-~~~~~  148 (294)
                      ...           .........+.++.+...... +..+.++. .  ..        .....+...+..+.+. ...++
T Consensus        93 l~~-----------~~~~~~~~~v~~iDE~~~l~~-~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~  160 (334)
T 1in4_A           93 MAA-----------ILTSLERGDVLFIDEIHRLNK-AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRS  160 (334)
T ss_dssp             HHH-----------HHHHCCTTCEEEEETGGGCCH-HHHHHHHHHHHTSCCCC---------------CCCEEEEEESCG
T ss_pred             HHH-----------HHHHccCCCEEEEcchhhcCH-HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCc
Confidence            000           000000111222222111111 22222211 0  00        0011112223333332 45677


Q ss_pred             ccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhce
Q 022663          149 HKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATH  220 (294)
Q Consensus       149 ~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~  220 (294)
                      ..||+|++||+.++                .+||+....++.++|.+.++..+     ++|+.+.+..++++
T Consensus       161 ~~Ls~~l~sR~~l~----------------~~Ld~~~~~~l~~iL~~~~~~~~-----~~~~~~~~~~ia~~  211 (334)
T 1in4_A          161 GLLSSPLRSRFGII----------------LELDFYTVKELKEIIKRAASLMD-----VEIEDAAAEMIAKR  211 (334)
T ss_dssp             GGSCHHHHTTCSEE----------------EECCCCCHHHHHHHHHHHHHHTT-----CCBCHHHHHHHHHT
T ss_pred             ccCCHHHHHhcCce----------------eeCCCCCHHHHHHHHHHHHHHcC-----CCcCHHHHHHHHHh
Confidence            89999999998655                78889899999999988876554     37888888777775

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=99.31  E-value=8.4e-15  Score=126.81  Aligned_cols=38  Identities=24%  Similarity=0.126  Sum_probs=22.9

Q ss_pred             CceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHh-CCcc
Q 022663           30 PLFYDFNLGISPGSRCLLVGANGSGKTTLLKILA-GKHM   67 (294)
Q Consensus        30 ~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~-G~~~   67 (294)
                      +..+++||++++|++++|+||||||||||+++|+ |+++
T Consensus        15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~   53 (231)
T 3lnc_A           15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN   53 (231)
T ss_dssp             -------CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred             cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence            4678999999999999999999999999999999 9763

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=99.31  E-value=2.4e-11  Score=111.79  Aligned_cols=73  Identities=12%  Similarity=0.245  Sum_probs=49.4

Q ss_pred             HHHHHHHHccC--CCEEEeeCCCCCC----------CH---HHHHHHHHHHHH---HHHhcCcEEEEEeCChh-------
Q 022663          158 RVQICMGLLHP--FKVLLLDEITVDL----------DV---VARMDLLDFFKD---ECEQRGATIVYATHIFD-------  212 (294)
Q Consensus       158 Rv~lAraL~~~--p~iLlLDEPt~gL----------D~---~~~~~l~~~l~~---~~~~~g~tviivsHd~~-------  212 (294)
                      -+.++++++.+  |+++++|||++.+          |+   ...+.+.+.+.+   ++++.++|||+++|...       
T Consensus       127 ~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~  206 (349)
T 2zr9_A          127 ALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFG  206 (349)
T ss_dssp             HHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC--------
T ss_pred             HHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccC
Confidence            45577777654  9999999999998          32   111233344444   34677999999999653       


Q ss_pred             ---------HHHhhhceEEEeeCCeEE
Q 022663          213 ---------GLETWATHLAYIQDGELR  230 (294)
Q Consensus       213 ---------~~~~~~d~v~~l~~G~i~  230 (294)
                               .+..+||.++.++.+++.
T Consensus       207 ~p~~~~gg~~l~~~ad~~l~lrr~~~~  233 (349)
T 2zr9_A          207 SPETTTGGKALKFYASVRLDVRRIETL  233 (349)
T ss_dssp             ---CCSSHHHHHHHCSEEEEEEEEEEE
T ss_pred             CCcccCCchHhhhccceEEEEEEeeee
Confidence                     256789999988876543

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=99.30  E-value=2.9e-14  Score=121.58  Aligned_cols=146  Identities=18%  Similarity=0.038  Sum_probs=81.8

Q ss_pred             EeCCCEEEEECCCCCcHHHHHHHHhCCcccCC--CceEEecCCcccccccccccCCcccccccccccccccCcccccccc
Q 022663           39 ISPGSRCLLVGANGSGKTTLLKILAGKHMVGG--RDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDF  116 (294)
Q Consensus        39 i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~--~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (294)
                      .++|++++|+||||||||||+++|+|++.+.+  .|.+..++......               .....+.........  
T Consensus        19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~~---------------~~~~~~~~~~~~~~~--   81 (208)
T 3c8u_A           19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNR---------------LLEPRGLLPRKGAPE--   81 (208)
T ss_dssp             CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCHH---------------HHGGGTCGGGTTSGG--
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCHH---------------HHHHhcccccCCCCc--
Confidence            57899999999999999999999999887532  44554444321100               000000000000000  


Q ss_pred             cHHHHhhcCCCCcHHHHHHHHHHcC----C--CcccccccCCHHHHHHHHHH-HHHccCCCEEEeeCCCCCCCHHHHHHH
Q 022663          117 SAEHMIFGVEGSDPVRRERLIELLD----I--DLQWRMHKVSDGQRRRVQIC-MGLLHPFKVLLLDEITVDLDVVARMDL  189 (294)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~l~~l~----l--~~~~~~~~LSgGqkqRv~lA-raL~~~p~iLlLDEPt~gLD~~~~~~l  189 (294)
                                ..+.......+..+.    +  ........+|+||+||+++| ++++.++.++++|||..          
T Consensus        82 ----------~~~~~~~~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~----------  141 (208)
T 3c8u_A           82 ----------TFDFEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW----------  141 (208)
T ss_dssp             ----------GBCHHHHHHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG----------
T ss_pred             ----------hhhHHHHHHHHHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCchh----------
Confidence                      001111222222221    1  11223345799999999998 88888888888888731          


Q ss_pred             HHHHHHHHHhcCcEEEEEeCChhH-HHhhhceEEEeeCCe
Q 022663          190 LDFFKDECEQRGATIVYATHIFDG-LETWATHLAYIQDGE  228 (294)
Q Consensus       190 ~~~l~~~~~~~g~tviivsHd~~~-~~~~~d~v~~l~~G~  228 (294)
                       ..+..    .--.+|+++++.+. +.+.+.|.  +..|.
T Consensus       142 -~~l~~----~~d~~i~vd~~~~~~~~R~~~R~--~~~g~  174 (208)
T 3c8u_A          142 -RDLTA----IWDVSIRLEVPMADLEARLVQRW--LDHGL  174 (208)
T ss_dssp             -GGGGG----TCSEEEEECCCHHHHHHHHHHHH--HHTTC
T ss_pred             -HHHHH----hcCEEEEEeCCHHHHHHHHHHHH--HhcCC
Confidence             11111    12368889999886 56666662  34454

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.30  E-value=5.3e-12  Score=115.44  Aligned_cols=148  Identities=15%  Similarity=0.208  Sum_probs=72.7

Q ss_pred             CEEEEECCCCCcHHHHHHHHhC-CcccCCCceEEecCCcccccccccccCCcccccccccccccccCcccccccccHHHH
Q 022663           43 SRCLLVGANGSGKTTLLKILAG-KHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHM  121 (294)
Q Consensus        43 e~~~liG~NGsGKSTLlk~i~G-~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (294)
                      ..+.|.||||+|||||+++|+| +..++ .|.+.+++........     .        ...+++..+.... .+...+ 
T Consensus        37 ~~~ll~Gp~G~GKTtl~~~la~~l~~~~-~g~i~~~~~~~~~~~~-----~--------~~~~~~~~~~~~~-~~~~~~-  100 (354)
T 1sxj_E           37 PHLLLYGPNGTGKKTRCMALLESIFGPG-VYRLKIDVRQFVTASN-----R--------KLELNVVSSPYHL-EITPSD-  100 (354)
T ss_dssp             CCEEEECSTTSSHHHHHHTHHHHHSCTT-CCC-------------------------------CCEECSSEE-EECCC--
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHcCCC-CCeEEecceeeccccc-----c--------cceeeeecccceE-EecHhh-
Confidence            3499999999999999999999 55544 6666665543210000     0        0001111110000 000000 


Q ss_pred             hhcCCCCcHHHHHHHHHHcCC--CcccccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHh
Q 022663          122 IFGVEGSDPVRRERLIELLDI--DLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQ  199 (294)
Q Consensus       122 ~~~~~~~~~~~~~~~l~~l~l--~~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~  199 (294)
                       .+  ........+.++.+..  ..+... .|||           +..+|+++|+|||++ ||+..+..+++.|.+..  
T Consensus       101 -~~--~~~~~~~~~~i~~~~~~~~~~~~~-~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~--  162 (354)
T 1sxj_E          101 -MG--NNDRIVIQELLKEVAQMEQVDFQD-SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS--  162 (354)
T ss_dssp             ------CCHHHHHHHHHHHTTTTC------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHST--
T ss_pred             -cC--CcchHHHHHHHHHHHHhccccccc-cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc--
Confidence             00  0011122333333221  111111 4566           788999999999999 99999999999988753  


Q ss_pred             cCcEEEEEeCChhHH-HhhhceEEEe
Q 022663          200 RGATIVYATHIFDGL-ETWATHLAYI  224 (294)
Q Consensus       200 ~g~tviivsHd~~~~-~~~~d~v~~l  224 (294)
                      .+.++|++||+++.+ ..+.+|+..+
T Consensus       163 ~~~~~Il~t~~~~~l~~~l~sR~~~~  188 (354)
T 1sxj_E          163 KNIRLIMVCDSMSPIIAPIKSQCLLI  188 (354)
T ss_dssp             TTEEEEEEESCSCSSCHHHHTTSEEE
T ss_pred             CCCEEEEEeCCHHHHHHHHHhhceEE
Confidence            368999999997643 3344555444

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.29  E-value=2.6e-15  Score=139.96  Aligned_cols=66  Identities=8%  Similarity=0.008  Sum_probs=56.2

Q ss_pred             CC--CEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEE-EeeCC-eEEecccH
Q 022663          168 PF--KVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLA-YIQDG-ELRRAEKL  235 (294)
Q Consensus       168 ~p--~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~-~l~~G-~i~~~g~~  235 (294)
                      +|  +++++|||+.++|+......++.+.......|.|++  +|+...+..+|+++. +|++| +++..++.
T Consensus       139 dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~  208 (392)
T 1ni3_A          139 DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKKEEQAIIEKVYQYLTETKQPIRKGDW  208 (392)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHHHHHHHHHHHHHHHHTTCSCGGGSCC
T ss_pred             CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHHHHHHHHHHHHHHhccCCceeecCCC
Confidence            89  999999999999999999999988876123466754  999999999999999 99999 88766654

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=99.27  E-value=1.1e-11  Score=117.84  Aligned_cols=178  Identities=12%  Similarity=0.104  Sum_probs=107.2

Q ss_pred             CceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccC-CCceEEecCCcccccccccccCCcccccccccccccccC
Q 022663           30 PLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVG-GRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAG  108 (294)
Q Consensus        30 ~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~-~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (294)
                      +.|+++..-+++|+++.|.|++|+|||||+..|++...+. +.....+........        +      ..+......
T Consensus       191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~~~--------l------~~r~~~~~~  256 (454)
T 2r6a_A          191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSAQQ--------L------VMRMLCAEG  256 (454)
T ss_dssp             HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCHHH--------H------HHHHHHHHH
T ss_pred             HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHH--------H------HHHHHHHHc
Confidence            4688888889999999999999999999999998855442 112222222111000        0      000000000


Q ss_pred             cccccccccHHHHhhc-CCCCcHHHHHHHHHHcCCC-c-ccccccCCHHHHHHHHHHHHHc--cCCCEEEeeCCCCCCCH
Q 022663          109 EIPLQGDFSAEHMIFG-VEGSDPVRRERLIELLDID-L-QWRMHKVSDGQRRRVQICMGLL--HPFKVLLLDEITVDLDV  183 (294)
Q Consensus       109 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~l~-~-~~~~~~LSgGqkqRv~lAraL~--~~p~iLlLDEPt~gLD~  183 (294)
                            ......+..+ +...+..+...+++.+... . -.....+|.++.+  +.++.++  .+|+++++|+++...+.
T Consensus       257 ------~~~~~~l~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~  328 (454)
T 2r6a_A          257 ------NINAQNLRTGKLTPEDWGKLTMAMGSLSNAGIYIDDTPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGS  328 (454)
T ss_dssp             ------TCCHHHHHTSCCCHHHHHHHHHHHHHHHSSCEEEECCTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCS
T ss_pred             ------CCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccC
Confidence                  0000111111 0000112233333333321 1 1224579999887  4566665  68999999999987743


Q ss_pred             --------HHHHHHHHHHHHHHHhcCcEEEEEeC---------C--hh--------HHHhhhceEEEeeCCeE
Q 022663          184 --------VARMDLLDFFKDECEQRGATIVYATH---------I--FD--------GLETWATHLAYIQDGEL  229 (294)
Q Consensus       184 --------~~~~~l~~~l~~~~~~~g~tviivsH---------d--~~--------~~~~~~d~v~~l~~G~i  229 (294)
                              ....++...|+.++++.+++||+++|         |  +.        .+...||.|++|+.++.
T Consensus       329 ~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~  401 (454)
T 2r6a_A          329 GRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY  401 (454)
T ss_dssp             CC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence                    33467778888888888999999999         3  32        57788999999987764

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=99.26  E-value=3.8e-12  Score=117.16  Aligned_cols=116  Identities=16%  Similarity=0.145  Sum_probs=64.8

Q ss_pred             ceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcc-cCCCceEEec-CCcccccccccccCCcccccccccccccccC
Q 022663           31 LFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHM-VGGRDVVQVL-NRSSFHDTQLVCSGDLSYLGGSWSKTVGSAG  108 (294)
Q Consensus        31 iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~-~~~~g~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (294)
                      -++++++. .+|++++|+||||||||||+|+|+|... +. .|.+... |.....    .....+.++++.         
T Consensus       205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~-~G~I~~~~G~g~~t----t~~~~i~~v~q~---------  269 (358)
T 2rcn_A          205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEIL-TNDVSNVSGLGQHT----TTAARLYHFPHG---------  269 (358)
T ss_dssp             THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCC-CC-----------------CCCEEEECTTS---------
T ss_pred             CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccc-cCCccccCCCCccc----eEEEEEEEECCC---------
Confidence            46777775 4899999999999999999999999887 75 6776654 432110    000111111110         


Q ss_pred             cccccccccHHHHhhcCCCCcHH----HHHHHHHHcCCC--cccccccCCHHHHHHHHHHHHH
Q 022663          109 EIPLQGDFSAEHMIFGVEGSDPV----RRERLIELLDID--LQWRMHKVSDGQRRRVQICMGL  165 (294)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL  165 (294)
                       ..++...+..+  +.......+    .+.++++.+++.  .++.+.+|| ||+||++||+++
T Consensus       270 -~~l~dtpgv~e--~~l~~l~~~e~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gl  328 (358)
T 2rcn_A          270 -GDVIDSPGVRE--FGLWHLEPEQITQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAVENGA  328 (358)
T ss_dssp             -CEEEECHHHHT--CCCCCCCHHHHHHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTS
T ss_pred             -CEecCcccHHH--hhhcCCCHHHHHHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHHHhcC
Confidence             11122222222  111122221    123455666664  477888999 999999999874

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=99.26  E-value=7.8e-12  Score=112.51  Aligned_cols=139  Identities=15%  Similarity=0.214  Sum_probs=82.8

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhCCcccCCCc-eEEecCCcccccccccccCCcccccccccccccccCcccccccccH
Q 022663           40 SPGSRCLLVGANGSGKTTLLKILAGKHMVGGRD-VVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSA  118 (294)
Q Consensus        40 ~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (294)
                      .+|++++|+|||||||||+++.|++.+.+. .| .+.+.+.+.+.                                ...
T Consensus       103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~-~G~~V~lv~~D~~r--------------------------------~~a  149 (296)
T 2px0_A          103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLE-KHKKIAFITTDTYR--------------------------------IAA  149 (296)
T ss_dssp             CCSSEEEEEESTTSSHHHHHHHHHHHHHHT-TCCCEEEEECCCSS--------------------------------TTH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHHh-cCCEEEEEecCccc--------------------------------chH
Confidence            479999999999999999999999977653 23 23222211100                                000


Q ss_pred             HHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHH
Q 022663          119 EHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECE  198 (294)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~  198 (294)
                      .           +....+.+.+++....   ..+. ..-+.+|++  +.+|+++|+|  |+|+|+.....+.++.. +..
T Consensus       150 ~-----------eqL~~~~~~~gl~~~~---~~~~-~~l~~al~~--~~~~dlvIiD--T~G~~~~~~~~~~el~~-~l~  209 (296)
T 2px0_A          150 V-----------EQLKTYAELLQAPLEV---CYTK-EEFQQAKEL--FSEYDHVFVD--TAGRNFKDPQYIDELKE-TIP  209 (296)
T ss_dssp             H-----------HHHHHHHTTTTCCCCB---CSSH-HHHHHHHHH--GGGSSEEEEE--CCCCCTTSHHHHHHHHH-HSC
T ss_pred             H-----------HHHHHHHHhcCCCeEe---cCCH-HHHHHHHHH--hcCCCEEEEe--CCCCChhhHHHHHHHHH-HHh
Confidence            0           0011111222222100   1122 333556664  4999999999  99999877655554433 322


Q ss_pred             ---hcCcEEEE-EeCChhHHHhhhceEEEeeCCeEEe
Q 022663          199 ---QRGATIVY-ATHIFDGLETWATHLAYIQDGELRR  231 (294)
Q Consensus       199 ---~~g~tvii-vsHd~~~~~~~~d~v~~l~~G~i~~  231 (294)
                         ..+.++++ ++|+.+.+.++++++..+..+.++.
T Consensus       210 ~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVl  246 (296)
T 2px0_A          210 FESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIF  246 (296)
T ss_dssp             CCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEE
T ss_pred             hcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEE
Confidence               22333444 4999999999999887777777765

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=99.23  E-value=9.8e-14  Score=125.57  Aligned_cols=58  Identities=19%  Similarity=0.160  Sum_probs=51.7

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEE-------------------eCCCEEEEECCCCCcHHHHHHHHhCCcc--cCCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGI-------------------SPGSRCLLVGANGSGKTTLLKILAGKHM--VGGR   71 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i-------------------~~Ge~~~liG~NGsGKSTLlk~i~G~~~--~~~~   71 (294)
                      +|++++|++.|.     ++++++++.+                   .+|+++||+||||||||||+++|+|++.  |+ +
T Consensus        37 ~i~~~~v~~~y~-----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~-~  110 (308)
T 1sq5_A           37 DLSLEEVAEIYL-----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPE-H  110 (308)
T ss_dssp             TCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTT-C
T ss_pred             ccchHhHHHHHH-----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCC-C
Confidence            689999999993     5899999998                   8999999999999999999999999776  65 6


Q ss_pred             ceEEe
Q 022663           72 DVVQV   76 (294)
Q Consensus        72 g~i~~   76 (294)
                      |.+.+
T Consensus       111 G~i~v  115 (308)
T 1sq5_A          111 RRVEL  115 (308)
T ss_dssp             CCEEE
T ss_pred             CeEEE
Confidence            77766

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=99.18  E-value=9.3e-12  Score=118.65  Aligned_cols=49  Identities=18%  Similarity=0.257  Sum_probs=44.3

Q ss_pred             CceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCc
Q 022663           30 PLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRS   80 (294)
Q Consensus        30 ~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~   80 (294)
                      .+|+++||+|++ ++++|+|||||||||||++|+|++.|+ +|.+.++|.+
T Consensus        18 ~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~-~G~I~~~g~~   66 (483)
T 3euj_A           18 NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPD-LTLLNFRNTT   66 (483)
T ss_dssp             TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCC-TTTCCCCCTT
T ss_pred             ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCC-CCEEEECCEE
Confidence            479999999999 999999999999999999999988876 7888777654

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.17  E-value=5.4e-12  Score=113.86  Aligned_cols=120  Identities=16%  Similarity=0.226  Sum_probs=67.3

Q ss_pred             EEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEe---cCCcccccccccccCCcccccccccccccccCccccc
Q 022663           37 LGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQV---LNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQ  113 (294)
Q Consensus        37 l~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (294)
                      +++.+|++++|+||||||||||+|+|+ +..+. .|.+.+   .|.+............+.++.+..    ++ ....++
T Consensus       160 ~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~-~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~p----g~-~~~~l~  232 (302)
T 2yv5_A          160 VDYLEGFICILAGPSGVGKSSILSRLT-GEELR-TQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTP----GF-SKVEAT  232 (302)
T ss_dssp             HHHTTTCEEEEECSTTSSHHHHHHHHH-SCCCC-CSCC---------CCCCEEEEEETTTEEEESSC----CC-SSCCGG
T ss_pred             HhhccCcEEEEECCCCCCHHHHHHHHH-HhhCc-ccccccccCCCCCceeeEEEEEcCCCcEEEECc----Cc-CcCccc
Confidence            356689999999999999999999999 87776 788877   665432211100001112221110    00 000111


Q ss_pred             ccccHHHH--hhc--------CC-----CCcHHHHHHHHHHcCCC---cccccccCCHHHHHHHHHHH
Q 022663          114 GDFSAEHM--IFG--------VE-----GSDPVRRERLIELLDID---LQWRMHKVSDGQRRRVQICM  163 (294)
Q Consensus       114 ~~~~~~~~--~~~--------~~-----~~~~~~~~~~l~~l~l~---~~~~~~~LSgGqkqRv~lAr  163 (294)
                      ..++.+++  .+.        ..     .....++.++++.+++.   .++++..|||.++|++.|||
T Consensus       233 ~~lt~e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~  300 (302)
T 2yv5_A          233 MFVKPREVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCR  300 (302)
T ss_dssp             GTSCGGGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred             ccCCHHHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence            22323322  111        11     11234678889999985   36788999999999999986

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=99.17  E-value=5.8e-14  Score=125.05  Aligned_cols=146  Identities=15%  Similarity=0.091  Sum_probs=81.1

Q ss_pred             CCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcccccccccccccccC
Q 022663           29 PPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAG  108 (294)
Q Consensus        29 ~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (294)
                      ..+++++++++++|  ++|+||||||||||+|+|+|...   .+.+.+.+.+............+.+..+....   ..+
T Consensus        33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~---~~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~---~~p  104 (274)
T 2x8a_A           33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESG---LNFISVKGPELLNMYVGESERAVRQVFQRAKN---SAP  104 (274)
T ss_dssp             HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTT---CEEEEEETTTTCSSTTHHHHHHHHHHHHHHHH---TCS
T ss_pred             HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcC---CCEEEEEcHHHHhhhhhHHHHHHHHHHHHHHh---cCC
Confidence            35889999999999  99999999999999999999654   35677766543211000000011111110000   000


Q ss_pred             cccccccccHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHHHccCCCEEEeeCCCC---------
Q 022663          109 EIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITV---------  179 (294)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~---------  179 (294)
                      ...+.     +++............    ....-..++.+.+|||||+||+.|++|+..+|++|  |||+.         
T Consensus       105 ~i~~~-----Deid~~~~~r~~~~~----~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i  173 (274)
T 2x8a_A          105 CVIFF-----DEVDALCPRRSDRET----GASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTL  173 (274)
T ss_dssp             EEEEE-----ETCTTTCC-------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEE
T ss_pred             CeEee-----ehhhhhhcccCCCcc----hHHHHHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEE
Confidence            00000     111000000000000    00000124567789999999999999999999985  99864         


Q ss_pred             ---CCCHHHHHHHHHHH
Q 022663          180 ---DLDVVARMDLLDFF  193 (294)
Q Consensus       180 ---gLD~~~~~~l~~~l  193 (294)
                         -.|...+.++++.+
T Consensus       174 ~~~~P~~~~r~~il~~~  190 (274)
T 2x8a_A          174 FVGLPPPADRLAILKTI  190 (274)
T ss_dssp             ECCSCCHHHHHHHHHHH
T ss_pred             EeCCcCHHHHHHHHHHH
Confidence               23666666666544

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=99.10  E-value=6.5e-12  Score=120.56  Aligned_cols=175  Identities=16%  Similarity=0.097  Sum_probs=95.7

Q ss_pred             eeeEEEeCCCEEEEECCCCCcHHHHHHHHhC-CcccCCCceEEecCCcccccccccccCCcccccccccccccccCcccc
Q 022663           34 DFNLGISPGSRCLLVGANGSGKTTLLKILAG-KHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPL  112 (294)
Q Consensus        34 ~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G-~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (294)
                      .+++++.++..+.|.|++||||||++++|.. ++.....+.+.+...+... .      ....+.. +.....     ..
T Consensus       159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~-~------el~~~~~-lPhl~~-----~V  225 (512)
T 2ius_A          159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKM-L------ELSVYEG-IPHLLT-----EV  225 (512)
T ss_dssp             EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSS-S------GGGGGTT-CTTBSS-----SC
T ss_pred             EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCch-h------hhhhhcc-CCcccc-----ee
Confidence            5788999999999999999999999999875 2211113333333222110 0      0000000 000000     00


Q ss_pred             ccccc-HHHHhhcCCCCcHHHHHHHHHHcCCC-c---c-cccccCCHHHHHHH----------HHHHHHccCCC-EEEee
Q 022663          113 QGDFS-AEHMIFGVEGSDPVRRERLIELLDID-L---Q-WRMHKVSDGQRRRV----------QICMGLLHPFK-VLLLD  175 (294)
Q Consensus       113 ~~~~~-~~~~~~~~~~~~~~~~~~~l~~l~l~-~---~-~~~~~LSgGqkqRv----------~lAraL~~~p~-iLlLD  175 (294)
                      ..+.. ....+... ....++..+++...++. .   + +....+|+||+|+.          .+|+++...|. ++++|
T Consensus       226 vtd~~~a~~~L~~~-~~EmerR~~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvID  304 (512)
T 2ius_A          226 VTDMKDAANALRWC-VNEMERRYKLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVD  304 (512)
T ss_dssp             BCSHHHHHHHHHHH-HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEE
T ss_pred             ecCHHHHHHHHHHH-HHHHHHHHHHHHHcCCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEEEEEe
Confidence            01100 00000000 00111223455666653 1   1 12346889988752          35667778898 89999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHH---HhcCcEEEEEeCChh-------HHHhhhceEEE
Q 022663          176 EITVDLDVVARMDLLDFFKDEC---EQRGATIVYATHIFD-------GLETWATHLAY  223 (294)
Q Consensus       176 EPt~gLD~~~~~~l~~~l~~~~---~~~g~tviivsHd~~-------~~~~~~d~v~~  223 (294)
                      |+++-+|.. ...+.+.|.+++   +..|.++|++||++.       ...++.+||.+
T Consensus       305 E~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~l  361 (512)
T 2ius_A          305 EFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAF  361 (512)
T ss_dssp             THHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEE
T ss_pred             CHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEE
Confidence            999988743 344555555443   445889999999987       45667777766

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=99.00  E-value=2.3e-11  Score=106.75  Aligned_cols=53  Identities=26%  Similarity=0.397  Sum_probs=35.2

Q ss_pred             cccEEEcce-EEEcCCCCCCCceeeeeEEEeC---CCEEEEECCCCCcHHHHHHHHhCC
Q 022663           11 LNSIKVCGM-QFSYEGNDKPPLFYDFNLGISP---GSRCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        11 ~~~l~~~~l-s~~y~~~~~~~iL~~vsl~i~~---Ge~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .++|+++|+ +++|++  ..++|+++||+|.+   |++++|+|++||||||+.++|++.
T Consensus        15 ~~~l~~~~~~~~~~~~--~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~   71 (250)
T 3nwj_A           15 SALLETGSLLHSPFDE--EQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARS   71 (250)
T ss_dssp             -------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHH
T ss_pred             CCceEEcceeeEEecC--cchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            358999999 999932  25799999999999   999999999999999999999873

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=98.95  E-value=1.5e-08  Score=93.11  Aligned_cols=40  Identities=25%  Similarity=0.209  Sum_probs=31.2

Q ss_pred             EEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEec
Q 022663           38 GISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVL   77 (294)
Q Consensus        38 ~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~   77 (294)
                      -+++|+++.|.||+|||||||+..+++...+.+...++++
T Consensus        57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId   96 (356)
T 3hr8_A           57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFID   96 (356)
T ss_dssp             SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence            4889999999999999999999999986555423333443

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=98.93  E-value=3e-10  Score=102.27  Aligned_cols=44  Identities=20%  Similarity=0.246  Sum_probs=30.9

Q ss_pred             EEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEe---cCCcc
Q 022663           37 LGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQV---LNRSS   81 (294)
Q Consensus        37 l~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~---~~~~~   81 (294)
                      |++.+|++++|+||||||||||+|+|+|+..|+ .|.+.+   .|...
T Consensus       164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~-~G~i~~~~~~g~~~  210 (301)
T 1u0l_A          164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLR-VSEVSEKLQRGRHT  210 (301)
T ss_dssp             HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC--------------C
T ss_pred             HHHhcCCeEEEECCCCCcHHHHHHHhccccccc-ccceecccCCCCCc
Confidence            567789999999999999999999999998886 788777   56543

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=98.88  E-value=1.1e-09  Score=91.57  Aligned_cols=37  Identities=8%  Similarity=0.011  Sum_probs=33.3

Q ss_pred             HHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHH
Q 022663          157 RRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKD  195 (294)
Q Consensus       157 qRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~  195 (294)
                      +.+.+|++++.+|+++++|  ||++|.....++++.|.+
T Consensus       152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~  188 (191)
T 1oix_A          152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT  188 (191)
T ss_dssp             SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence            3467899999999999999  999999999999988865

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=98.87  E-value=1.8e-09  Score=102.92  Aligned_cols=117  Identities=22%  Similarity=0.257  Sum_probs=76.5

Q ss_pred             CceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcccccccccccccccCc
Q 022663           30 PLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGE  109 (294)
Q Consensus        30 ~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (294)
                      ..++++++.+++|  +.|+||+|+|||||+++|++....   ..+.+.                                
T Consensus        39 ~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~---~f~~is--------------------------------   81 (476)
T 2ce7_A           39 SKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANV---PFFHIS--------------------------------   81 (476)
T ss_dssp             HHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTC---CEEEEE--------------------------------
T ss_pred             HHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCC---CeeeCC--------------------------------
Confidence            4667788888888  889999999999999999983210   000000                                


Q ss_pred             ccccccccHHHHhhcCCCCcHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHHHccCCCEEEeeCC----------CC
Q 022663          110 IPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEI----------TV  179 (294)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEP----------t~  179 (294)
                              ..++..                      ...+  .+++++|..+++|....|.+|++||+          +.
T Consensus        82 --------~~~~~~----------------------~~~g--~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~  129 (476)
T 2ce7_A           82 --------GSDFVE----------------------LFVG--VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLG  129 (476)
T ss_dssp             --------GGGTTT----------------------CCTT--HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC------
T ss_pred             --------HHHHHH----------------------HHhc--ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccC
Confidence                    000000                      0000  26778889999999999999999999          34


Q ss_pred             CCCHHHHHHHHHHHHHHH---HhcCcEEEEEeCChhHHH
Q 022663          180 DLDVVARMDLLDFFKDEC---EQRGATIVYATHIFDGLE  215 (294)
Q Consensus       180 gLD~~~~~~l~~~l~~~~---~~~g~tviivsHd~~~~~  215 (294)
                      |.|......+.+++..+-   ...+..||.+||+++.+.
T Consensus       130 g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld  168 (476)
T 2ce7_A          130 GGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILD  168 (476)
T ss_dssp             ---CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSC
T ss_pred             cCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhc
Confidence            677766666666665542   234678999999986543

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=98.86  E-value=1.3e-09  Score=92.06  Aligned_cols=71  Identities=7%  Similarity=0.055  Sum_probs=45.1

Q ss_pred             CCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHH--HhhhceEEEeeC
Q 022663          151 VSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGL--ETWATHLAYIQD  226 (294)
Q Consensus       151 LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~--~~~~d~v~~l~~  226 (294)
                      .+.|+.+|..+++.+..+|+.+..+  .+.++|..+..+.+.+...   .+.++|+.+|.+.+.  ...||.+++++-
T Consensus        60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~---~~~~vv~~~~~l~e~~~~~~~d~vi~l~~  132 (206)
T 1jjv_A           60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ---TAPYTLFVVPLLIENKLTALCDRILVVDV  132 (206)
T ss_dssp             ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC---CSSEEEEECTTTTTTTCGGGCSEEEEEEC
T ss_pred             ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc---CCCEEEEEechhhhcCcHhhCCEEEEEEC
Confidence            3678899999999888888654333  3456666666665554321   256888889988665  677999988863

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=98.82  E-value=2.9e-09  Score=107.48  Aligned_cols=75  Identities=19%  Similarity=0.139  Sum_probs=58.3

Q ss_pred             cccccCCHHHHHHHHHHHHHccCCCEEEeeCCCC-CCCHHHHHHHHHHHHHHHHhcCcEEEE-EeCChhHHHhhhceE
Q 022663          146 WRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITV-DLDVVARMDLLDFFKDECEQRGATIVY-ATHIFDGLETWATHL  221 (294)
Q Consensus       146 ~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~-gLD~~~~~~l~~~l~~~~~~~g~tvii-vsHd~~~~~~~~d~v  221 (294)
                      ..+.-+|+|+.+|..++++++.++++||+|||.. +||......+++.+.... ....+|++ +||+.+.+.++++..
T Consensus       186 ~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~-~~~~iIl~SAT~~~~~l~~~~~~~  262 (773)
T 2xau_A          186 TILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRR-PDLKIIIMSATLDAEKFQRYFNDA  262 (773)
T ss_dssp             CSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHC-TTCEEEEEESCSCCHHHHHHTTSC
T ss_pred             CCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhC-CCceEEEEeccccHHHHHHHhcCC
Confidence            3466789999999999999999999999999996 999877666665554432 22456666 499998888887753

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=98.82  E-value=1.3e-09  Score=91.57  Aligned_cols=31  Identities=19%  Similarity=0.386  Sum_probs=25.9

Q ss_pred             eEEEeCCCEEEEECCCCCcHHHHHHHHhCCc
Q 022663           36 NLGISPGSRCLLVGANGSGKTTLLKILAGKH   66 (294)
Q Consensus        36 sl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~   66 (294)
                      |+++.+|++++|+||||||||||+++|+|++
T Consensus         1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~   31 (205)
T 3tr0_A            1 SNAMNKANLFIISAPSGAGKTSLVRALVKAL   31 (205)
T ss_dssp             ----CCCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CCcCCCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence            5788899999999999999999999999974

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.81  E-value=6.3e-10  Score=100.37  Aligned_cols=39  Identities=15%  Similarity=0.288  Sum_probs=26.9

Q ss_pred             EEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEe
Q 022663           37 LGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQV   76 (294)
Q Consensus        37 l~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~   76 (294)
                      +++.+|++++|+||||||||||+|+|+|...+. .|.+.+
T Consensus       168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~-~G~I~~  206 (307)
T 1t9h_A          168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLR-TNEISE  206 (307)
T ss_dssp             GGGGTTSEEEEEESHHHHHHHHHHHHCC------------
T ss_pred             HhhcCCCEEEEECCCCCCHHHHHHHhccccccc-ccceee
Confidence            678899999999999999999999999988776 676665

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=98.78  E-value=1e-09  Score=107.91  Aligned_cols=168  Identities=14%  Similarity=0.093  Sum_probs=92.6

Q ss_pred             cceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcccc
Q 022663           17 CGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYL   96 (294)
Q Consensus        17 ~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~   96 (294)
                      ++++.-|+.   ..+++++++.+.+|+.++|+||||+|||||+++|+|+..+...+.+.+.+.......     ..+.+.
T Consensus        38 ~~l~~i~G~---~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~-----p~i~~~  109 (604)
T 3k1j_A           38 KLIDQVIGQ---EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENM-----PRIKTV  109 (604)
T ss_dssp             SHHHHCCSC---HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTS-----CEEEEE
T ss_pred             cccceEECc---hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccC-----CcEEEE
Confidence            334444543   468899999999999999999999999999999999887654466655444321100     001111


Q ss_pred             cccccc-----------------cccccC-cccccccccHHHHhhcCCCCc--HHHHHHHHHHcCCC--cccccccCCHH
Q 022663           97 GGSWSK-----------------TVGSAG-EIPLQGDFSAEHMIFGVEGSD--PVRRERLIELLDID--LQWRMHKVSDG  154 (294)
Q Consensus        97 ~~~~~~-----------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~l~l~--~~~~~~~LSgG  154 (294)
                      ++....                 ...... ......++...+  .......  ........+.++..  .....+.+|+|
T Consensus       110 p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~--~~~~~~~~v~~~~~~~~~L~G~~~~~~~~~g~~~~g  187 (604)
T 3k1j_A          110 PACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDN--CGRTKAPFIDATGAHAGALLGDVRHDPFQSGGLGTP  187 (604)
T ss_dssp             ETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECC--TTCSSCCEEECTTCCHHHHHCEECCCCC----CCCC
T ss_pred             ecchHHHHHHHHHHhhccchhhhhhcccccccccccceeecc--ccCCCCCEEEcCCCCHHhcCceEEechhhcCCcccc
Confidence            000000                 000000 000000000000  0000000  00000112223321  11223569999


Q ss_pred             HHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHH
Q 022663          155 QRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKD  195 (294)
Q Consensus       155 qkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~  195 (294)
                      ++|++..++....++.+|+|||... |++..+..+++.|.+
T Consensus       188 ~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~  227 (604)
T 3k1j_A          188 AHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE  227 (604)
T ss_dssp             GGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred             ccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence            9999999999999999999999987 899988888888764

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=98.77  E-value=8.8e-11  Score=101.57  Aligned_cols=58  Identities=16%  Similarity=0.248  Sum_probs=41.1

Q ss_pred             ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcc
Q 022663           12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSS   81 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~   81 (294)
                      ..|+++|+...|+    .      +|+|.+ ++++|+|||||||||||++|+|++.|+ +|.+.++|.+.
T Consensus         8 ~~l~l~~~~~~~~----~------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~-~G~i~~~g~~~   65 (227)
T 1qhl_A            8 RSLTLINWNGFFA----R------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPD-LTLLHFRNTTE   65 (227)
T ss_dssp             EEEEEEEETTEEE----E------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCC-TTTC-------
T ss_pred             eEEEEEeeecccC----C------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccC-CCeEEECCEEc
Confidence            3578888765542    1      566666 899999999999999999999988876 77777776543

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=98.76  E-value=2.9e-08  Score=90.09  Aligned_cols=56  Identities=13%  Similarity=0.189  Sum_probs=40.0

Q ss_pred             HHHHHHHHHc---cCCCEEEeeCCCCCCCH--------HH----HHHHHHHHHHHHHhcCcEEEEEeCChh
Q 022663          157 RRVQICMGLL---HPFKVLLLDEITVDLDV--------VA----RMDLLDFFKDECEQRGATIVYATHIFD  212 (294)
Q Consensus       157 qRv~lAraL~---~~p~iLlLDEPt~gLD~--------~~----~~~l~~~l~~~~~~~g~tviivsHd~~  212 (294)
                      +.+..++.++   .+|+++++|+.++-...        ..    ..+++..|..++++.+.+||+++|-..
T Consensus       189 ~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~~~  259 (324)
T 2z43_A          189 AIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVMA  259 (324)
T ss_dssp             HHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC--
T ss_pred             HHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcceee
Confidence            5566777777   67999999999876532        11    245666677777788999999998653

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=98.75  E-value=3.6e-08  Score=90.23  Aligned_cols=56  Identities=14%  Similarity=0.217  Sum_probs=39.0

Q ss_pred             HHHHHHHHHc----cCCCEEEeeCCCCCCCHH------------HHHHHHHHHHHHHHhcCcEEEEEeCChh
Q 022663          157 RRVQICMGLL----HPFKVLLLDEITVDLDVV------------ARMDLLDFFKDECEQRGATIVYATHIFD  212 (294)
Q Consensus       157 qRv~lAraL~----~~p~iLlLDEPt~gLD~~------------~~~~l~~~l~~~~~~~g~tviivsHd~~  212 (294)
                      +.+..++.++    .+++++++|+.++-....            ...+++..|..++++.+.+||+++|-..
T Consensus       204 ~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~~  275 (343)
T 1v5w_A          204 ELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTA  275 (343)
T ss_dssp             HHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC--
T ss_pred             HHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeecee
Confidence            3444455555    679999999999876432            1345666677778888999999999654

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=98.71  E-value=7.5e-09  Score=85.50  Aligned_cols=35  Identities=29%  Similarity=0.245  Sum_probs=31.7

Q ss_pred             eeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCccc
Q 022663           33 YDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMV   68 (294)
Q Consensus        33 ~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~   68 (294)
                      +++++++.+| +++|+||||||||||+++|.+++.+
T Consensus        18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~   52 (182)
T 3kta_A           18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGG   52 (182)
T ss_dssp             SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred             ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcC
Confidence            6889999999 9999999999999999999986544

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=98.68  E-value=8.7e-08  Score=87.95  Aligned_cols=50  Identities=12%  Similarity=0.018  Sum_probs=37.4

Q ss_pred             cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHh--cCcEEEEEeCChhHHHhh
Q 022663          167 HPFKVLLLDEITVDLDVVARMDLLDFFKDECEQ--RGATIVYATHIFDGLETW  217 (294)
Q Consensus       167 ~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~--~g~tviivsHd~~~~~~~  217 (294)
                      .+|.+|++||+... |......+..++.+....  .+.++|++||+.+....+
T Consensus       124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l  175 (389)
T 1fnn_A          124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNL  175 (389)
T ss_dssp             TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTS
T ss_pred             CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHh
Confidence            45889999999876 888888887777654321  378999999998655443

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=98.66  E-value=7e-08  Score=88.05  Aligned_cols=128  Identities=18%  Similarity=0.264  Sum_probs=82.7

Q ss_pred             CceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcccccccccccccccCc
Q 022663           30 PLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGE  109 (294)
Q Consensus        30 ~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (294)
                      +-|+.+.--+.+|+++.|.|++|+|||||+.-++...... +..+.                   ++.            
T Consensus        34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~-g~~Vl-------------------~fS------------   81 (338)
T 4a1f_A           34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALND-DRGVA-------------------VFS------------   81 (338)
T ss_dssp             HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHT-TCEEE-------------------EEE------------
T ss_pred             hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc-CCeEE-------------------EEe------------
Confidence            3567766679999999999999999999998887532221 11111                   100            


Q ss_pred             ccccccccHHHHhhcCCCCcHHHHHHHHH-HcCCCcc-cccccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHH
Q 022663          110 IPLQGDFSAEHMIFGVEGSDPVRRERLIE-LLDIDLQ-WRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARM  187 (294)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~l~l~~~-~~~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~  187 (294)
                          ..++.+++           ..+++. ..++... -.-+.||.++++|+..|...+.+++++|.|+|...++     
T Consensus        82 ----lEms~~ql-----------~~Rlls~~~~v~~~~l~~g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~-----  141 (338)
T 4a1f_A           82 ----LEMSAEQL-----------ALRALSDLTSINMHDLESGRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE-----  141 (338)
T ss_dssp             ----SSSCHHHH-----------HHHHHHHHHCCCHHHHHHTCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH-----
T ss_pred             ----CCCCHHHH-----------HHHHHHHhhCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH-----
Confidence                01111111           112211 1122211 1124799999999999999999999999999975433     


Q ss_pred             HHHHHHHHHHHhc-CcEEEEEeC
Q 022663          188 DLLDFFKDECEQR-GATIVYATH  209 (294)
Q Consensus       188 ~l~~~l~~~~~~~-g~tviivsH  209 (294)
                      +|...++++.+++ +..+|+|-|
T Consensus       142 ~i~~~ir~l~~~~gg~~lIVIDy  164 (338)
T 4a1f_A          142 QIRLQLRKLKSQHKELGIAFIDY  164 (338)
T ss_dssp             HHHHHHHHHHHHCTTEEEEEEEE
T ss_pred             HHHHHHHHHHHhcCCCCEEEEec
Confidence            5666666666666 788988864

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=98.66  E-value=2.7e-08  Score=91.50  Aligned_cols=56  Identities=18%  Similarity=0.299  Sum_probs=38.0

Q ss_pred             EcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCc-ccCCCceE
Q 022663           16 VCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKH-MVGGRDVV   74 (294)
Q Consensus        16 ~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~-~~~~~g~i   74 (294)
                      ++++...|+......+|++++++++   .++|+|++|||||||++.|+|.. .|.+.|.+
T Consensus        11 l~~~~~~~~~~~~~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~v   67 (360)
T 3t34_A           11 IQRACTALGDHGDSSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIV   67 (360)
T ss_dssp             TTTTTTSCSSCCSSCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSC
T ss_pred             HHHHHHhhCccccccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcc
Confidence            4566666753222358999999998   89999999999999999999943 24444543

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=98.62  E-value=1.7e-08  Score=84.91  Aligned_cols=38  Identities=32%  Similarity=0.244  Sum_probs=23.9

Q ss_pred             CCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCC
Q 022663           28 KPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        28 ~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      ...+++||||++.+|++++|+|++||||||+.+.|++.
T Consensus        11 ~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~   48 (199)
T 3vaa_A           11 VDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARK   48 (199)
T ss_dssp             -------------CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence            35689999999999999999999999999999999964

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=98.61  E-value=6.5e-09  Score=87.06  Aligned_cols=37  Identities=11%  Similarity=0.092  Sum_probs=32.6

Q ss_pred             HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHH
Q 022663          159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDEC  197 (294)
Q Consensus       159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~  197 (294)
                      ...|++++.+|+++++|  ||++|.....++++.|.+..
T Consensus       130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~  166 (199)
T 2f9l_A          130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI  166 (199)
T ss_dssp             HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence            45689999999999999  99999999999999887654

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=98.61  E-value=4.4e-09  Score=88.58  Aligned_cols=48  Identities=21%  Similarity=0.139  Sum_probs=36.6

Q ss_pred             cceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcc
Q 022663           17 CGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHM   67 (294)
Q Consensus        17 ~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~   67 (294)
                      +|+++.++.   ....+.+++..++|++++|+||||||||||+++|++.+.
T Consensus         3 ~~~~~~~~~---~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~   50 (200)
T 3uie_A            3 TNIKWHECS---VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY   50 (200)
T ss_dssp             -------CC---CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCcccccc---cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            467776654   457788999999999999999999999999999999765

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=98.60  E-value=1.7e-07  Score=86.08  Aligned_cols=65  Identities=6%  Similarity=0.146  Sum_probs=50.2

Q ss_pred             cccccCCHHHHHHHHHHHHHccCCCEEEee-CCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEe--CChhH
Q 022663          146 WRMHKVSDGQRRRVQICMGLLHPFKVLLLD-EITVDLDVVARMDLLDFFKDECEQRGATIVYAT--HIFDG  213 (294)
Q Consensus       146 ~~~~~LSgGqkqRv~lAraL~~~p~iLlLD-EPt~gLD~~~~~~l~~~l~~~~~~~g~tviivs--Hd~~~  213 (294)
                      ..+..+|+|++|++. +.+...++-++++| +|.+++|......+++.+.....  +..+|+|.  ||+..
T Consensus       227 ~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~--~~piilV~NK~Dl~~  294 (357)
T 2e87_A          227 RPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK--DLPFLVVINKIDVAD  294 (357)
T ss_dssp             SCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT--TSCEEEEECCTTTCC
T ss_pred             cchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC--CCCEEEEEECcccCC
Confidence            345679999998876 55556778899999 99999999888777776665432  67888888  88753

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=98.57  E-value=2.7e-08  Score=83.50  Aligned_cols=32  Identities=25%  Similarity=0.297  Sum_probs=27.1

Q ss_pred             EEEeCCCEEEEECCCCCcHHHHHHHHhCCccc
Q 022663           37 LGISPGSRCLLVGANGSGKTTLLKILAGKHMV   68 (294)
Q Consensus        37 l~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~   68 (294)
                      ++|.+|++++|+||||||||||+++|++.+.+
T Consensus         1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~   32 (207)
T 2j41_A            1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPST   32 (207)
T ss_dssp             ---CCCCEEEEECSTTSCHHHHHHHHHHCTTC
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCC
Confidence            46889999999999999999999999997744

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=98.56  E-value=1.4e-06  Score=80.07  Aligned_cols=26  Identities=31%  Similarity=0.374  Sum_probs=24.2

Q ss_pred             EeCCCEEEEECCCCCcHHHHHHHHhC
Q 022663           39 ISPGSRCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        39 i~~Ge~~~liG~NGsGKSTLlk~i~G   64 (294)
                      +++|+++.|.|++|+|||||...++.
T Consensus        60 l~~G~ii~I~G~pGsGKTtLal~la~   85 (356)
T 1u94_A           60 LPMGRIVEIYGPESSGKTTLTLQVIA   85 (356)
T ss_dssp             EETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence            88999999999999999999988775

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=98.44  E-value=7.3e-08  Score=81.03  Aligned_cols=35  Identities=26%  Similarity=0.474  Sum_probs=24.6

Q ss_pred             eeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCc
Q 022663           32 FYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKH   66 (294)
Q Consensus        32 L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~   66 (294)
                      +-+..++.++|++++|+||||||||||+++|+|.+
T Consensus        19 ~~~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~   53 (200)
T 4eun_A           19 YFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET   53 (200)
T ss_dssp             ---------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             HHHhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence            33344677899999999999999999999999854

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=98.42  E-value=2.5e-07  Score=85.38  Aligned_cols=51  Identities=16%  Similarity=0.083  Sum_probs=39.6

Q ss_pred             ccccccCCHHHHHHHHHH----HHH-ccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHh
Q 022663          145 QWRMHKVSDGQRRRVQIC----MGL-LHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQ  199 (294)
Q Consensus       145 ~~~~~~LSgGqkqRv~lA----raL-~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~  199 (294)
                      ..++..+|+|+++++.++    +++ ..+|++    +|+|++|......+++.|.+....
T Consensus       299 ~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~SA~~g~gi~~L~~~I~~~l~~  354 (364)
T 2qtf_A          299 LNKIDKINGDLYKKLDLVEKLSKELYSPIFDV----IPISALKRTNLELLRDKIYQLATQ  354 (364)
T ss_dssp             EECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----EECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             EECCCCCCchHHHHHHHHHHHHHHhcCCCCcE----EEEECCCCcCHHHHHHHHHHHhcc
Confidence            345667898888888877    665 444554    899999999999999999886644

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.42  E-value=5.4e-07  Score=84.78  Aligned_cols=29  Identities=38%  Similarity=0.210  Sum_probs=25.8

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCcccC
Q 022663           41 PGSRCLLVGANGSGKTTLLKILAGKHMVG   69 (294)
Q Consensus        41 ~Ge~~~liG~NGsGKSTLlk~i~G~~~~~   69 (294)
                      ++.+++++|||||||||++..|++.+...
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~  124 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKR  124 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            57899999999999999999999876654

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=98.41  E-value=9.2e-07  Score=79.87  Aligned_cols=129  Identities=12%  Similarity=0.111  Sum_probs=80.2

Q ss_pred             CceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCcccccccccccccccCc
Q 022663           30 PLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGE  109 (294)
Q Consensus        30 ~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (294)
                      +-|+.+.--+.+|+++.|.|++|+|||||+..++......+...+                    ++.            
T Consensus        56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl--------------------~~s------------  103 (315)
T 3bh0_A           56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVN--------------------LHS------------  103 (315)
T ss_dssp             HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEE--------------------EEE------------
T ss_pred             HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEE--------------------EEE------------
Confidence            457777766999999999999999999999888742211110000                    000            


Q ss_pred             ccccccccHHHHhhcCCCCcHHHHHHHHHH-cCCCccc-ccc--cCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHH
Q 022663          110 IPLQGDFSAEHMIFGVEGSDPVRRERLIEL-LDIDLQW-RMH--KVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVA  185 (294)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-l~l~~~~-~~~--~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~  185 (294)
                          ...+.++           ...+++.. .++...+ .-+  .||.++++|+..|...+.++++++.|+|...+    
T Consensus       104 ----lE~s~~~-----------l~~R~~~~~~~i~~~~l~~~~~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~~----  164 (315)
T 3bh0_A          104 ----LEMGKKE-----------NIKRLIVTAGSINAQKIKAARRDFASEDWGKLSMAIGEISNSNINIFDKAGQSV----  164 (315)
T ss_dssp             ----SSSCHHH-----------HHHHHHHHHTTCCHHHHHSCHHHHCSSCHHHHHHHHHHHHTSCEEEECCSCCBH----
T ss_pred             ----CCCCHHH-----------HHHHHHHHHcCCCHHHHhcCCCCCCHHHHHHHHHHHHHHhCCCEEEECCCCCCH----
Confidence                0011111           11122211 1222111 112  39999999999999999999999999986442    


Q ss_pred             HHHHHHHHHHHHHhcCcE--EEEEeCC
Q 022663          186 RMDLLDFFKDECEQRGAT--IVYATHI  210 (294)
Q Consensus       186 ~~~l~~~l~~~~~~~g~t--viivsHd  210 (294)
                       .++...++++.++.+..  +|+|-|-
T Consensus       165 -~~i~~~i~~l~~~~~~~~~lVVID~l  190 (315)
T 3bh0_A          165 -NYIWSKTRQTKRKNPGKRVIVMIDYL  190 (315)
T ss_dssp             -HHHHHHHHHHHHTSSSCCEEEEEECG
T ss_pred             -HHHHHHHHHHHHhcCCCCeEEEEeCc
Confidence             34566666666666777  8888763

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=98.41  E-value=4.6e-08  Score=85.55  Aligned_cols=41  Identities=22%  Similarity=0.237  Sum_probs=31.4

Q ss_pred             ceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHh---CCcccCCCceEE
Q 022663           31 LFYDFNLGISPGSRCLLVGANGSGKTTLLKILA---GKHMVGGRDVVQ   75 (294)
Q Consensus        31 iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~---G~~~~~~~g~i~   75 (294)
                      ++++.+   .+|++++|+|||||||||++++|+   |+..++ .|.+.
T Consensus        19 ~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d-~g~i~   62 (252)
T 4e22_A           19 ERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLD-SGAIY   62 (252)
T ss_dssp             ----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEE-HHHHH
T ss_pred             hhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCC-CCcee
Confidence            444443   789999999999999999999999   987765 55554

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=98.39  E-value=1.2e-07  Score=78.52  Aligned_cols=28  Identities=29%  Similarity=0.439  Sum_probs=25.3

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhCCcc
Q 022663           40 SPGSRCLLVGANGSGKTTLLKILAGKHM   67 (294)
Q Consensus        40 ~~Ge~~~liG~NGsGKSTLlk~i~G~~~   67 (294)
                      .+|++++|+||||||||||+++|++...
T Consensus         3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~   30 (180)
T 1kgd_A            3 HMRKTLVLLGAHGVGRRHIKNTLITKHP   30 (180)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            3689999999999999999999999653

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=98.37  E-value=8.9e-08  Score=87.49  Aligned_cols=28  Identities=25%  Similarity=0.447  Sum_probs=24.4

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhCCcc
Q 022663           40 SPGSRCLLVGANGSGKTTLLKILAGKHM   67 (294)
Q Consensus        40 ~~Ge~~~liG~NGsGKSTLlk~i~G~~~   67 (294)
                      ..+..+.|.||+|+|||||++.+++...
T Consensus        43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~   70 (386)
T 2qby_A           43 EKPNNIFIYGLTGTGKTAVVKFVLSKLH   70 (386)
T ss_dssp             CCCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            4578999999999999999999998543

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=98.35  E-value=5.3e-09  Score=100.29  Aligned_cols=58  Identities=26%  Similarity=0.387  Sum_probs=43.3

Q ss_pred             EEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCc
Q 022663           15 KVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRS   80 (294)
Q Consensus        15 ~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~   80 (294)
                      +++++...|..   ..+++++++.+++|  +.|+||||+|||||+++|+|...   .+.+.+.+.+
T Consensus        42 ~l~~lv~~l~~---~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~---~~~i~i~g~~   99 (499)
T 2dhr_A           42 ELKEIVEFLKN---PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR---VPFITASGSD   99 (499)
T ss_dssp             HHHHHHHHHHC---GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT---CCEEEEEGGG
T ss_pred             HHHHHHHHhhc---hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC---CCEEEEehhH
Confidence            34444444533   35788999999999  99999999999999999999542   5566666543

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=98.34  E-value=1.8e-07  Score=88.39  Aligned_cols=44  Identities=18%  Similarity=0.327  Sum_probs=35.4

Q ss_pred             cCCCEEEeeCCCCCCCH-HHHHHHHHHHHHHHHhcCcEEEEEeCCh
Q 022663          167 HPFKVLLLDEITVDLDV-VARMDLLDFFKDECEQRGATIVYATHIF  211 (294)
Q Consensus       167 ~~p~iLlLDEPt~gLD~-~~~~~l~~~l~~~~~~~g~tviivsHd~  211 (294)
                      .+|++|++||+..-.+. ..+..++..+..+. +.|..||++||+.
T Consensus       193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~-~~~~~iIitt~~~  237 (440)
T 2z4s_A          193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELH-DSGKQIVICSDRE  237 (440)
T ss_dssp             TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHH-TTTCEEEEEESSC
T ss_pred             CCCCEEEEeCcccccCChHHHHHHHHHHHHHH-HCCCeEEEEECCC
Confidence            48999999999877664 67778888887765 4588999999983

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=98.33  E-value=1.6e-07  Score=88.49  Aligned_cols=48  Identities=23%  Similarity=0.421  Sum_probs=37.5

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVG   69 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~   69 (294)
                      .|+++|+ +.|++   .   .  .+++.+|++++|+||||||||||+++|+++..+.
T Consensus         6 ~l~~~~~-~~~~~---~---~--~~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~~   53 (430)
T 1w1w_A            6 GLELSNF-KSYRG---V---T--KVGFGESNFTSIIGPNGSGKSNMMDAISFVLGVR   53 (430)
T ss_dssp             EEEEESC-SSCCS---E---E--EEECTTCSEEEEECSTTSSHHHHHHHHHHHTTC-
T ss_pred             EEEEeCE-EEECC---c---e--eEEecCCCEEEEECCCCCCHHHHHHHHHhhhccc
Confidence            4788888 67743   1   2  3557789999999999999999999999866543

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=98.33  E-value=7.7e-08  Score=89.12  Aligned_cols=36  Identities=28%  Similarity=0.228  Sum_probs=34.1

Q ss_pred             CceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCC
Q 022663           30 PLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        30 ~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .+|+++++.+++|++++|+||||||||||+++|+|.
T Consensus       157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~  192 (377)
T 1svm_A          157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL  192 (377)
T ss_dssp             HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            578999999999999999999999999999999984

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=98.33  E-value=1.2e-07  Score=81.70  Aligned_cols=41  Identities=24%  Similarity=0.235  Sum_probs=32.6

Q ss_pred             eeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCc
Q 022663           35 FNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRS   80 (294)
Q Consensus        35 vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~   80 (294)
                      -+.+.++|++++|.|+||||||||+++|+|.     +|.+.+.+.+
T Consensus        13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~-----~g~v~~~~~~   53 (230)
T 2vp4_A           13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY-----KNDICLLTEP   53 (230)
T ss_dssp             CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG-----TTTEEEECCT
T ss_pred             ccCCCCCceEEEEECCCCCCHHHHHHHHHhc-----cCCeEEEecC
Confidence            3446689999999999999999999999995     3445555543

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=98.32  E-value=1.7e-08  Score=88.04  Aligned_cols=58  Identities=26%  Similarity=0.369  Sum_probs=46.1

Q ss_pred             EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCC
Q 022663           14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNR   79 (294)
Q Consensus        14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~   79 (294)
                      .+++++.+.|..   ..+++++++++++|  ++|+||||||||||+++|+|...   .+.+.+.+.
T Consensus        26 ~~l~~l~~~~~~---~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~---~~~i~~~~~   83 (254)
T 1ixz_A           26 EELKEIVEFLKN---PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR---VPFITASGS   83 (254)
T ss_dssp             HHHHHHHHHHHC---HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT---CCEEEEEHH
T ss_pred             HHHHHHHHHHHC---HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC---CCEEEeeHH
Confidence            456677777754   46899999999999  99999999999999999999643   556666553

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=98.31  E-value=2.7e-07  Score=78.11  Aligned_cols=29  Identities=24%  Similarity=0.297  Sum_probs=26.4

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhCCccc
Q 022663           40 SPGSRCLLVGANGSGKTTLLKILAGKHMV   68 (294)
Q Consensus        40 ~~Ge~~~liG~NGsGKSTLlk~i~G~~~~   68 (294)
                      ++|++++|+||||||||||++.|++.+.+
T Consensus         6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~   34 (208)
T 3tau_A            6 ERGLLIVLSGPSGVGKGTVREAVFKDPET   34 (208)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence            58999999999999999999999997643

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=98.31  E-value=1.7e-08  Score=91.52  Aligned_cols=46  Identities=13%  Similarity=0.110  Sum_probs=37.5

Q ss_pred             eEEEcCCCCCCCceeeeeEEEeCCC------EEEEECCCCCcHHHHHHHHhCCcc
Q 022663           19 MQFSYEGNDKPPLFYDFNLGISPGS------RCLLVGANGSGKTTLLKILAGKHM   67 (294)
Q Consensus        19 ls~~y~~~~~~~iL~~vsl~i~~Ge------~~~liG~NGsGKSTLlk~i~G~~~   67 (294)
                      +++.|++   ...|++++..+..++      ++||+||||||||||+++|++++.
T Consensus        66 l~~~~~~---~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~  117 (321)
T 3tqc_A           66 LSFYVTA---RQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS  117 (321)
T ss_dssp             HHHHHHH---HHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             HHHhhcc---hHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            3444543   457888888888887      999999999999999999999765

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=98.30  E-value=2.1e-08  Score=88.78  Aligned_cols=57  Identities=26%  Similarity=0.391  Sum_probs=44.7

Q ss_pred             EEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCC
Q 022663           15 KVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNR   79 (294)
Q Consensus        15 ~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~   79 (294)
                      +++++.+.|..   ..+++++++++++|  ++|+||||||||||+++|+|...   .+.+.+.+.
T Consensus        51 ~l~~l~~~~~~---~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~---~~~i~~~~~  107 (278)
T 1iy2_A           51 ELKEIVEFLKN---PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR---VPFITASGS  107 (278)
T ss_dssp             HHHHHHHHHHC---HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT---CCEEEEEHH
T ss_pred             HHHHHHHHHHC---HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC---CCEEEecHH
Confidence            34566666643   45889999999999  99999999999999999999653   556666554

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=98.25  E-value=4.7e-06  Score=73.87  Aligned_cols=74  Identities=15%  Similarity=0.121  Sum_probs=43.8

Q ss_pred             CHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHH----------HHHHHHHHHHHHHHh---cCcEEEEEeCChhHH----
Q 022663          152 SDGQRRRVQICMGLLHPFKVLLLDEITVDLDVV----------ARMDLLDFFKDECEQ---RGATIVYATHIFDGL----  214 (294)
Q Consensus       152 SgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~----------~~~~l~~~l~~~~~~---~g~tviivsHd~~~~----  214 (294)
                      +++++.|..+..+...+|.+|++||+.+-++..          ....++..+......   .+..||.+|++.+.+    
T Consensus        97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l  176 (297)
T 3b9p_A           97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA  176 (297)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred             hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence            356777778888888899999999998766532          222334333322110   235678888875422    


Q ss_pred             HhhhceEEEee
Q 022663          215 ETWATHLAYIQ  225 (294)
Q Consensus       215 ~~~~d~v~~l~  225 (294)
                      .+-+++++.+.
T Consensus       177 ~~R~~~~i~~~  187 (297)
T 3b9p_A          177 LRRFTKRVYVS  187 (297)
T ss_dssp             HHHCCEEEECC
T ss_pred             HhhCCeEEEeC
Confidence            22355555543

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=98.24  E-value=2.5e-07  Score=83.88  Aligned_cols=48  Identities=27%  Similarity=0.238  Sum_probs=39.8

Q ss_pred             eeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCc
Q 022663           32 FYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRS   80 (294)
Q Consensus        32 L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~   80 (294)
                      +++++|++.+|++++|+|+||+||||++..|++.+.+. ++.+.+.+.+
T Consensus        95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~-g~kVllid~D  142 (320)
T 1zu4_A           95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAEL-GYKVLIAAAD  142 (320)
T ss_dssp             -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHT-TCCEEEEECC
T ss_pred             ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEeCC
Confidence            37899999999999999999999999999999987765 5555554444

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=98.24  E-value=2.8e-07  Score=77.55  Aligned_cols=40  Identities=25%  Similarity=0.087  Sum_probs=32.1

Q ss_pred             EEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecC
Q 022663           38 GISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLN   78 (294)
Q Consensus        38 ~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~   78 (294)
                      ...+|++++|+|+||||||||+++|++.+.+. ++.+.+.+
T Consensus        18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~-~~~v~~~~   57 (201)
T 1rz3_A           18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQ-GISVCVFH   57 (201)
T ss_dssp             CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred             ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-CCeEEEec
Confidence            46789999999999999999999999977654 44444433

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=98.22  E-value=1.1e-06  Score=78.73  Aligned_cols=65  Identities=15%  Similarity=0.091  Sum_probs=48.3

Q ss_pred             CCHHHHHHHHHHHHHc--cCCCEEEeeCCCCCCCHHH-HHHHHHHHHHHHHhcCc--EEEEEeCChhHHHhhhceEE
Q 022663          151 VSDGQRRRVQICMGLL--HPFKVLLLDEITVDLDVVA-RMDLLDFFKDECEQRGA--TIVYATHIFDGLETWATHLA  222 (294)
Q Consensus       151 LSgGqkqRv~lAraL~--~~p~iLlLDEPt~gLD~~~-~~~l~~~l~~~~~~~g~--tviivsHd~~~~~~~~d~v~  222 (294)
                      +|+|++   .+++.+.  ..|.++++    |.+|... +..+.+.+.++.+..+.  .+.+++|+-+-+..++|.+.
T Consensus       101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~  170 (301)
T 1ega_A          101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVR  170 (301)
T ss_dssp             CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHH
T ss_pred             CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHH
Confidence            898886   4566665  67899998    8999877 67788888877655554  66677788777777777654

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=98.22  E-value=2.3e-07  Score=85.63  Aligned_cols=52  Identities=25%  Similarity=0.223  Sum_probs=46.9

Q ss_pred             cEEEcceEEEcCCCCCCCcee--------------eeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCc
Q 022663           13 SIKVCGMQFSYEGNDKPPLFY--------------DFNLGISPGSRCLLVGANGSGKTTLLKILAGKH   66 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~--------------~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~   66 (294)
                      -+.++||++.|+.  .+..|+              |+.+.|.+|+.++|+||+|+|||||++.|++.+
T Consensus       133 ri~Fe~ltp~yP~--er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i  198 (422)
T 3ice_A          133 KILFENLTPLHAN--SRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI  198 (422)
T ss_dssp             SCCTTTSCEESCC--SBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred             CceeccccccCCC--CccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence            5889999999986  356788              899999999999999999999999999998754

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=98.21  E-value=5.2e-07  Score=89.55  Aligned_cols=30  Identities=43%  Similarity=0.379  Sum_probs=25.3

Q ss_pred             eEEEeCCCEEEEECCCCCcHHHHHHHHhCC
Q 022663           36 NLGISPGSRCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        36 sl~i~~Ge~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      ++++++|..++|+|+||+|||||++.|++.
T Consensus         3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~   32 (665)
T 2dy1_A            3 TEGGAMIRTVALVGHAGSGKTTLTEALLYK   32 (665)
T ss_dssp             ---CCCEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCccCCCcEEEEECCCCChHHHHHHHHHHh
Confidence            467789999999999999999999999964

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=98.18  E-value=9.5e-07  Score=71.03  Aligned_cols=31  Identities=35%  Similarity=0.539  Sum_probs=25.9

Q ss_pred             eeeeEEEeCCCEEEEECCCCCcHHHHHHHHhC
Q 022663           33 YDFNLGISPGSRCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        33 ~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G   64 (294)
                      ++.++++.+| +.+|+|||||||||++.+|.-
T Consensus        15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~   45 (149)
T 1f2t_A           15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILV   45 (149)
T ss_dssp             SSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred             cceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence            4556666665 999999999999999999973

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=98.15  E-value=6.1e-06  Score=74.42  Aligned_cols=27  Identities=30%  Similarity=0.398  Sum_probs=24.6

Q ss_pred             EEeCCCEEEEECCCCCcHHHHHHHHhC
Q 022663           38 GISPGSRCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        38 ~i~~Ge~~~liG~NGsGKSTLlk~i~G   64 (294)
                      -+++|+++.|.||+|+|||||...++.
T Consensus        94 Gl~~g~i~~i~G~~gsGKT~la~~la~  120 (322)
T 2i1q_A           94 GLESQSVTEFAGVFGSGKTQIMHQSCV  120 (322)
T ss_dssp             SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999999999988764

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=98.14  E-value=3.9e-08  Score=89.95  Aligned_cols=54  Identities=15%  Similarity=0.078  Sum_probs=45.5

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVG   69 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~   69 (294)
                      +++.+++.+.|+.   ..+++++++.+.+|.+++|+|++|+|||||++.|+|.+.+.
T Consensus        30 ~ie~~~~~~~~~~---~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~   83 (341)
T 2p67_A           30 LVESRHPRHQALS---TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIRE   83 (341)
T ss_dssp             HHHCCCHHHHHHH---HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred             HhhcCCchhhhHH---HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence            4666777777753   46889999999999999999999999999999999876554

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=98.14  E-value=2.1e-05  Score=74.24  Aligned_cols=175  Identities=13%  Similarity=0.075  Sum_probs=92.3

Q ss_pred             CceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccC-CCceEEecCCcccccccccccCCcccccccccccccccC
Q 022663           30 PLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVG-GRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAG  108 (294)
Q Consensus        30 ~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~-~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (294)
                      +-|+.+.--+++|+++.|.|++|+|||||+..++...... +...+.+........        +  .........+...
T Consensus       188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~~~~--------l--~~R~~~~~~~i~~  257 (444)
T 2q6t_A          188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMPAAQ--------L--TLRMMCSEARIDM  257 (444)
T ss_dssp             HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSCHHH--------H--HHHHHHHHTTCCT
T ss_pred             HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCCHHH--------H--HHHHHHHHcCCCH
Confidence            3466666568999999999999999999998887643321 222333222111000        0  0000000000000


Q ss_pred             cccccccccHHHHhhcCCCCcHHHHHHHHHHcC---CCcccccccCCHHHHHHHHHHHHHc--cCCCEEEeeCCCCCCCH
Q 022663          109 EIPLQGDFSAEHMIFGVEGSDPVRRERLIELLD---IDLQWRMHKVSDGQRRRVQICMGLL--HPFKVLLLDEITVDLDV  183 (294)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~---l~~~~~~~~LSgGqkqRv~lAraL~--~~p~iLlLDEPt~gLD~  183 (294)
                      .....+.++..         +..+....+..+.   +..+ ....+|..+.  .+.++.+.  .+|+++++|..+.-...
T Consensus       258 ~~l~~g~l~~~---------~~~~~~~a~~~l~~~~l~i~-d~~~~s~~~l--~~~~~~l~~~~~~~lIvID~l~~~~~~  325 (444)
T 2q6t_A          258 NRVRLGQLTDR---------DFSRLVDVASRLSEAPIYID-DTPDLTLMEV--RARARRLVSQNQVGLIIIDYLQLMSGP  325 (444)
T ss_dssp             TTCCGGGCCHH---------HHHHHHHHHHHHHTSCEEEE-CCTTCBHHHH--HHHHHHHHHHSCCCEEEEECGGGCBCC
T ss_pred             HHHhCCCCCHH---------HHHHHHHHHHHHhcCCEEEE-CCCCCCHHHH--HHHHHHHHHHcCCCEEEEcChhhcCCC
Confidence            00000001110         1112222222221   1111 1235666654  34455554  58999999998765432


Q ss_pred             ----------HHHHHHHHHHHHHHHhcCcEEEEEeCChh-------------------HHHhhhceEEEeeC
Q 022663          184 ----------VARMDLLDFFKDECEQRGATIVYATHIFD-------------------GLETWATHLAYIQD  226 (294)
Q Consensus       184 ----------~~~~~l~~~l~~~~~~~g~tviivsHd~~-------------------~~~~~~d~v~~l~~  226 (294)
                                .....+...|+.++++.+++||+++|--.                   .++..||.|++|..
T Consensus       326 ~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L~r  397 (444)
T 2q6t_A          326 GSGKSGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIYR  397 (444)
T ss_dssp             -------CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEEEE
T ss_pred             cCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEEec
Confidence                      12246777888888889999999998211                   24667888888864

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=98.14  E-value=5.5e-07  Score=87.33  Aligned_cols=42  Identities=29%  Similarity=0.392  Sum_probs=34.4

Q ss_pred             EEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEE-ecCC
Q 022663           38 GISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQ-VLNR   79 (294)
Q Consensus        38 ~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~-~~~~   79 (294)
                      .+++|++++|+|+||||||||+++|+|.+.+.+++.+. +++.
T Consensus       365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD  407 (552)
T 3cr8_A          365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGD  407 (552)
T ss_dssp             GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSH
T ss_pred             ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCc
Confidence            57899999999999999999999999988776333554 5543

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=98.13  E-value=8.2e-07  Score=72.57  Aligned_cols=26  Identities=27%  Similarity=0.419  Sum_probs=24.0

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhCC
Q 022663           40 SPGSRCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        40 ~~Ge~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .+|++++|+|+||||||||+++|++.
T Consensus         6 ~~g~~i~l~G~~GsGKSTl~~~l~~~   31 (175)
T 1knq_A            6 HDHHIYVLMGVSGSGKSAVASEVAHQ   31 (175)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence            46899999999999999999999974

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=98.11  E-value=1.1e-06  Score=74.02  Aligned_cols=31  Identities=26%  Similarity=0.456  Sum_probs=25.6

Q ss_pred             eEEEeCCCEEEEECCCCCcHHHHHHHHhCCc
Q 022663           36 NLGISPGSRCLLVGANGSGKTTLLKILAGKH   66 (294)
Q Consensus        36 sl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~   66 (294)
                      |+...+|++++|+||||||||||++.|++..
T Consensus        13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~   43 (197)
T 3ney_A           13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQN   43 (197)
T ss_dssp             ---CCSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             cCCCCCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence            3445689999999999999999999999854

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=98.10  E-value=1.1e-06  Score=71.57  Aligned_cols=26  Identities=35%  Similarity=0.478  Sum_probs=23.5

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCc
Q 022663           41 PGSRCLLVGANGSGKTTLLKILAGKH   66 (294)
Q Consensus        41 ~Ge~~~liG~NGsGKSTLlk~i~G~~   66 (294)
                      .|++++|+||||||||||+++|++.+
T Consensus         3 ~~~~i~l~G~~GsGKSTl~~~La~~l   28 (173)
T 1kag_A            3 EKRNIFLVGPMGAGKSTIGRQLAQQL   28 (173)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999999999853

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=98.09  E-value=3.9e-05  Score=70.66  Aligned_cols=27  Identities=33%  Similarity=0.485  Sum_probs=24.0

Q ss_pred             EEeCCCEEEEECCCCCcHHHHHHHHhC
Q 022663           38 GISPGSRCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        38 ~i~~Ge~~~liG~NGsGKSTLlk~i~G   64 (294)
                      -+++|+++.|.||.|+|||||...++-
T Consensus        70 Gl~~G~li~I~G~pGsGKTtlal~la~   96 (366)
T 1xp8_A           70 GIPRGRITEIYGPESGGKTTLALAIVA   96 (366)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CccCCcEEEEEcCCCCChHHHHHHHHH
Confidence            478999999999999999999877754

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=98.09  E-value=8e-06  Score=76.67  Aligned_cols=57  Identities=23%  Similarity=0.079  Sum_probs=43.7

Q ss_pred             EcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCc
Q 022663           16 VCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRS   80 (294)
Q Consensus        16 ~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~   80 (294)
                      .+++++.|++   ..  ++++|+  +|++++++|+|||||||++..|++.+.+. ++.+.+.+.+
T Consensus        79 ~~~L~~~~~~---~~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~-g~~Vllvd~D  135 (425)
T 2ffh_A           79 YEALKEALGG---EA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK-GRRPLLVAAD  135 (425)
T ss_dssp             HHHHHHHTTS---SC--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTT-TCCEEEEECC
T ss_pred             HHHHHHHhCC---Cc--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEeecc
Confidence            4567777864   22  678888  89999999999999999999999987765 5555554444

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=98.03  E-value=1.9e-06  Score=72.50  Aligned_cols=33  Identities=30%  Similarity=0.132  Sum_probs=28.4

Q ss_pred             eeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCc
Q 022663           34 DFNLGISPGSRCLLVGANGSGKTTLLKILAGKH   66 (294)
Q Consensus        34 ~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~   66 (294)
                      ++--++++|.+++|+|++|||||||+++|++.+
T Consensus        13 ~~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~   45 (207)
T 2qt1_A           13 GLVPRGSKTFIIGISGVTNSGKTTLAKNLQKHL   45 (207)
T ss_dssp             -CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred             cccccCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence            344467889999999999999999999999964

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=98.01  E-value=3.6e-06  Score=75.26  Aligned_cols=29  Identities=38%  Similarity=0.693  Sum_probs=26.1

Q ss_pred             EEEeCCCEEEEECCCCCcHHHHHHHHhCC
Q 022663           37 LGISPGSRCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        37 l~i~~Ge~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      +.+.++..+.|.||+|+|||||+++|++.
T Consensus        44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~   72 (301)
T 3cf0_A           44 FGMTPSKGVLFYGPPGCGKTLLAKAIANE   72 (301)
T ss_dssp             HCCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred             cCCCCCceEEEECCCCcCHHHHHHHHHHH
Confidence            45688999999999999999999999984

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=97.96  E-value=6.4e-05  Score=64.49  Aligned_cols=46  Identities=17%  Similarity=-0.102  Sum_probs=30.8

Q ss_pred             ccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHh-cCcEEEEEeC-Ch
Q 022663          166 LHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQ-RGATIVYATH-IF  211 (294)
Q Consensus       166 ~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~-~g~tviivsH-d~  211 (294)
                      ..+|+++|+..+.+.++......+..++..+... ...++|+++| |.
T Consensus       110 ~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~  157 (239)
T 3lxx_A          110 SPGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTRKDD  157 (239)
T ss_dssp             TTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGG
T ss_pred             CCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeCCcc
Confidence            3578999999998888886665555544332211 1248888898 44

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=97.93  E-value=5e-06  Score=70.20  Aligned_cols=30  Identities=37%  Similarity=0.594  Sum_probs=25.5

Q ss_pred             eeeeEEEeCCCEEEEECCCCCcHHHHHHHHh
Q 022663           33 YDFNLGISPGSRCLLVGANGSGKTTLLKILA   63 (294)
Q Consensus        33 ~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~   63 (294)
                      .+.++++.+| +.+|+|||||||||++.+|.
T Consensus        15 ~~~~i~f~~~-~~~I~G~NgsGKStil~ai~   44 (203)
T 3qks_A           15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred             cceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence            4566677665 99999999999999999986

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=97.92  E-value=3.6e-06  Score=69.06  Aligned_cols=29  Identities=31%  Similarity=0.399  Sum_probs=25.3

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhCCccc
Q 022663           40 SPGSRCLLVGANGSGKTTLLKILAGKHMV   68 (294)
Q Consensus        40 ~~Ge~~~liG~NGsGKSTLlk~i~G~~~~   68 (294)
                      .+|++++|+|++||||||++++|++.+.+
T Consensus         3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~   31 (179)
T 2pez_A            3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC   31 (179)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            47899999999999999999999986544

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=97.91  E-value=2.9e-05  Score=69.48  Aligned_cols=56  Identities=21%  Similarity=0.063  Sum_probs=41.8

Q ss_pred             EcceEEEcCCCCCCCceee-eeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecC
Q 022663           16 VCGMQFSYEGNDKPPLFYD-FNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLN   78 (294)
Q Consensus        16 ~~~ls~~y~~~~~~~iL~~-vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~   78 (294)
                      .+++++.|++   ..  ++ ++|+.+ |.+++++|+||+||||++..|++.+.+. ++.+.+.+
T Consensus        77 ~~~l~~~~~~---~~--~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~-g~~v~l~~  133 (297)
T 1j8m_F           77 YDELSNLFGG---DK--EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKK-GFKVGLVG  133 (297)
T ss_dssp             HHHHHHHTTC---SC--CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHT-TCCEEEEE
T ss_pred             HHHHHHHhcc---cc--ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEe
Confidence            4566677764   11  56 888876 9999999999999999999999977654 44444433

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=97.85  E-value=4.9e-05  Score=64.37  Aligned_cols=26  Identities=23%  Similarity=0.266  Sum_probs=23.3

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCc
Q 022663           41 PGSRCLLVGANGSGKTTLLKILAGKH   66 (294)
Q Consensus        41 ~Ge~~~liG~NGsGKSTLlk~i~G~~   66 (294)
                      .+..+.|.||+|+|||||++.++...
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~~   76 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACARA   76 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            57899999999999999999998743

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=97.84  E-value=7.4e-06  Score=70.50  Aligned_cols=38  Identities=24%  Similarity=0.192  Sum_probs=26.9

Q ss_pred             ceeeeeEEEe---CCCEEEEECCCCCcHHHHHHHHhCCccc
Q 022663           31 LFYDFNLGIS---PGSRCLLVGANGSGKTTLLKILAGKHMV   68 (294)
Q Consensus        31 iL~~vsl~i~---~Ge~~~liG~NGsGKSTLlk~i~G~~~~   68 (294)
                      -|.++||++.   +|.+++|.|++||||||+++.|+..+..
T Consensus        12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~   52 (229)
T 4eaq_A           12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK   52 (229)
T ss_dssp             --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred             CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence            4778888877   9999999999999999999999985543

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=97.83  E-value=2.5e-05  Score=70.17  Aligned_cols=43  Identities=16%  Similarity=0.267  Sum_probs=30.4

Q ss_pred             cCCCEEEeeCCCCC-CCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q 022663          167 HPFKVLLLDEITVD-LDVVARMDLLDFFKDECEQRGATIVYATHI  210 (294)
Q Consensus       167 ~~p~iLlLDEPt~g-LD~~~~~~l~~~l~~~~~~~g~tviivsHd  210 (294)
                      .++++|++||+-.- -+...+..++..+..... .+..+|++++.
T Consensus        97 ~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~-~~~~iii~~~~  140 (324)
T 1l8q_A           97 KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYL-LEKQIILASDR  140 (324)
T ss_dssp             HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHH-TTCEEEEEESS
T ss_pred             cCCCEEEEcCcccccCChHHHHHHHHHHHHHHH-CCCeEEEEecC
Confidence            46999999998652 334677788888877654 46667776653

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=97.81  E-value=5.5e-07  Score=87.34  Aligned_cols=48  Identities=21%  Similarity=0.127  Sum_probs=37.9

Q ss_pred             cceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCccc
Q 022663           17 CGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMV   68 (294)
Q Consensus        17 ~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~   68 (294)
                      +++.+.|..   ..++.++++++ +|++++|+||||+|||||+++|++...+
T Consensus        87 ~~vk~~i~~---~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~  134 (543)
T 3m6a_A           87 EKVKERILE---YLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGR  134 (543)
T ss_dssp             HHHHHHHHH---HHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHH---HHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence            444555532   34678888888 8999999999999999999999986543

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=97.81  E-value=4.1e-05  Score=63.77  Aligned_cols=24  Identities=38%  Similarity=0.444  Sum_probs=21.7

Q ss_pred             CEEEEECCCCCcHHHHHHHHhCCc
Q 022663           43 SRCLLVGANGSGKTTLLKILAGKH   66 (294)
Q Consensus        43 e~~~liG~NGsGKSTLlk~i~G~~   66 (294)
                      ..+.|.||+|+|||||++.|+...
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~   78 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANEL   78 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHH
Confidence            689999999999999999998743

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=97.80  E-value=8.3e-06  Score=69.21  Aligned_cols=25  Identities=32%  Similarity=0.403  Sum_probs=22.5

Q ss_pred             CCEEEEECCCCCcHHHHHHHHhCCc
Q 022663           42 GSRCLLVGANGSGKTTLLKILAGKH   66 (294)
Q Consensus        42 Ge~~~liG~NGsGKSTLlk~i~G~~   66 (294)
                      +.+++|+||+||||||+.++|++.+
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~~~   29 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAEAL   29 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            5689999999999999999998743

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.79  E-value=1.1e-05  Score=66.68  Aligned_cols=31  Identities=26%  Similarity=0.484  Sum_probs=25.9

Q ss_pred             eeeEEEeCCCEEEEECCCCCcHHHHHHHHhC
Q 022663           34 DFNLGISPGSRCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        34 ~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G   64 (294)
                      ++|++..+|.+++|+|++||||||+.+.|+.
T Consensus         2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~   32 (184)
T 1y63_A            2 PGSMEQPKGINILITGTPGTGKTSMAEMIAA   32 (184)
T ss_dssp             ----CCCSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcCcCCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence            5788999999999999999999999999986

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=97.78  E-value=5.1e-06  Score=79.96  Aligned_cols=33  Identities=24%  Similarity=0.526  Sum_probs=30.5

Q ss_pred             ceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhC
Q 022663           31 LFYDFNLGISPGSRCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        31 iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G   64 (294)
                      .+++++|++.+| +.+|+|+||||||||+.+|.+
T Consensus        50 ~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~   82 (517)
T 4ad8_A           50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGL   82 (517)
T ss_dssp             TBSCEEEECCCS-EEEEEESHHHHHHHHTHHHHH
T ss_pred             ceeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHH
Confidence            578999999999 999999999999999999954

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=97.76  E-value=9.1e-06  Score=74.37  Aligned_cols=38  Identities=24%  Similarity=0.294  Sum_probs=29.6

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecC
Q 022663           40 SPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLN   78 (294)
Q Consensus        40 ~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~   78 (294)
                      +++.+++|+|++|||||||++.|+|...+. ++.+.+.+
T Consensus        72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~-~~~v~V~~  109 (349)
T 2www_A           72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTER-GHKLSVLA  109 (349)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHHHhhhc-CCeEEEEe
Confidence            357899999999999999999999866554 44444433

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=97.75  E-value=2.4e-05  Score=72.02  Aligned_cols=43  Identities=16%  Similarity=0.433  Sum_probs=34.0

Q ss_pred             EEEcceEEE-cCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHh
Q 022663           14 IKVCGMQFS-YEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILA   63 (294)
Q Consensus        14 l~~~~ls~~-y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~   63 (294)
                      +.+..|+.. |.      .+++..+++.+| +.+|+|||||||||+|.+|.
T Consensus         3 M~l~~L~l~nFr------~~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~   46 (371)
T 3auy_A            3 MILKEIRMNNFK------SHVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF   46 (371)
T ss_dssp             EEEEEEEEEEET------TEEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred             cEEeEEEEEccc------cccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence            455666654 32      357888888886 99999999999999999985

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=97.72  E-value=0.00045  Score=74.50  Aligned_cols=28  Identities=29%  Similarity=0.334  Sum_probs=25.7

Q ss_pred             EeCCCEEEEECCCCCcHHHHHHHHhCCc
Q 022663           39 ISPGSRCLLVGANGSGKTTLLKILAGKH   66 (294)
Q Consensus        39 i~~Ge~~~liG~NGsGKSTLlk~i~G~~   66 (294)
                      +++|+++.|.||+|+|||||+..++...
T Consensus       729 l~~G~lVlI~G~PG~GKTtLal~lA~~a  756 (1706)
T 3cmw_A          729 LPMGRIVEIYGPESSGKTTLTLQVIAAA  756 (1706)
T ss_dssp             EETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cCCCceEEEECCCCCCcHHHHHHHHHHH
Confidence            8999999999999999999999887643

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.72  E-value=1.5e-05  Score=66.91  Aligned_cols=28  Identities=25%  Similarity=0.395  Sum_probs=24.8

Q ss_pred             EEeCCCEEEEECCCCCcHHHHHHHHhCC
Q 022663           38 GISPGSRCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        38 ~i~~Ge~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      ...+|.+++|+||+|||||||.+.|+..
T Consensus         8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~   35 (204)
T 2qor_A            8 HMARIPPLVVCGPSGVGKGTLIKKVLSE   35 (204)
T ss_dssp             -CCCCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             ccccCCEEEEECCCCCCHHHHHHHHHHh
Confidence            4578999999999999999999999864

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.70  E-value=1.2e-05  Score=67.09  Aligned_cols=21  Identities=33%  Similarity=0.515  Sum_probs=20.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 022663           44 RCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G   64 (294)
                      +++|+|+|||||||+.++|++
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHH
Confidence            689999999999999999998

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.69  E-value=3.6e-06  Score=77.40  Aligned_cols=46  Identities=20%  Similarity=0.326  Sum_probs=36.1

Q ss_pred             ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCc
Q 022663           12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKH   66 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~   66 (294)
                      ..+.+.+++..|++   +.++++++|+|      +|+|++|+|||||++.|.|..
T Consensus        16 ~~v~~~~l~~~~~~---k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~   61 (361)
T 2qag_A           16 GYVGFANLPNQVHR---KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTD   61 (361)
T ss_dssp             -----CCHHHHHHT---HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCC
T ss_pred             ceEEeccchHHhCC---eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCC
Confidence            35888999998865   56889999987      999999999999999998853

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=97.68  E-value=0.00026  Score=63.72  Aligned_cols=60  Identities=10%  Similarity=0.172  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHHHH--c--cCCCEEEeeCCCCCCC-----H----------HHHHHHHHHH---HHHHHhcCcEEEEEeCC
Q 022663          153 DGQRRRVQICMGL--L--HPFKVLLLDEITVDLD-----V----------VARMDLLDFF---KDECEQRGATIVYATHI  210 (294)
Q Consensus       153 gGqkqRv~lAraL--~--~~p~iLlLDEPt~gLD-----~----------~~~~~l~~~l---~~~~~~~g~tviivsHd  210 (294)
                      -++++.+.++.++  +  .+|+++++|=-++-.-     -          ...+.+-+.|   ..++++.+.+||++-|-
T Consensus        92 ~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQV  171 (333)
T 3io5_A           92 SLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINHT  171 (333)
T ss_dssp             BHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred             CHHHHHHHHHHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECCe
Confidence            3555556666666  3  3699999998766531     0          1222333333   34567889999999998


Q ss_pred             hh
Q 022663          211 FD  212 (294)
Q Consensus       211 ~~  212 (294)
                      ..
T Consensus       172 ~k  173 (333)
T 3io5_A          172 YE  173 (333)
T ss_dssp             --
T ss_pred             ee
Confidence            65

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=97.66  E-value=5.9e-05  Score=64.68  Aligned_cols=27  Identities=37%  Similarity=0.448  Sum_probs=23.2

Q ss_pred             EEeCCCEEEEECCCCCcHHHHHHHHhC
Q 022663           38 GISPGSRCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        38 ~i~~Ge~~~liG~NGsGKSTLlk~i~G   64 (294)
                      .+.+|+.++++||+||||||++.++..
T Consensus        72 ~i~~g~~~~i~g~TGsGKTt~~~~~~~   98 (235)
T 3llm_A           72 AISQNSVVIIRGATGCGKTTQVPQFIL   98 (235)
T ss_dssp             HHHHCSEEEEECCTTSSHHHHHHHHHH
T ss_pred             HHhcCCEEEEEeCCCCCcHHhHHHHHh
Confidence            456799999999999999999887753

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=97.66  E-value=2.3e-05  Score=69.69  Aligned_cols=39  Identities=28%  Similarity=0.330  Sum_probs=29.6

Q ss_pred             CceeeeeEEEeCC-----------CEEEEECCCCCcHHHHHHHHhCCccc
Q 022663           30 PLFYDFNLGISPG-----------SRCLLVGANGSGKTTLLKILAGKHMV   68 (294)
Q Consensus        30 ~iL~~vsl~i~~G-----------e~~~liG~NGsGKSTLlk~i~G~~~~   68 (294)
                      .+++.+...+..+           ..+.|.||+|+|||||.++|++....
T Consensus        24 ~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~   73 (311)
T 4fcw_A           24 EAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD   73 (311)
T ss_dssp             HHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcC
Confidence            3455555555543           58999999999999999999986543

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=97.66  E-value=5.8e-06  Score=68.96  Aligned_cols=42  Identities=29%  Similarity=0.517  Sum_probs=31.5

Q ss_pred             EEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhC
Q 022663           20 QFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        20 s~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G   64 (294)
                      ++.|++  -..+++++||..+++ .++|+|++|+|||||++.+++
T Consensus         6 ~~~~~~--~~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~   47 (198)
T 1f6b_A            6 DWIYSG--FSSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKD   47 (198)
T ss_dssp             ---------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSC
T ss_pred             HHHHHH--HHHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhc
Confidence            455665  246899999998887 578999999999999999987

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=97.64  E-value=2.3e-05  Score=63.78  Aligned_cols=26  Identities=38%  Similarity=0.728  Sum_probs=22.7

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhCC
Q 022663           40 SPGSRCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        40 ~~Ge~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .+|..++|+|++|+|||||++.++|.
T Consensus         2 ~~~~ki~ivG~~g~GKStLl~~l~~~   27 (172)
T 2gj8_A            2 SHGMKVVIAGRPNAGKSSLLNALAGR   27 (172)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            36788999999999999999999985

>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2

Probab=97.61  E-value=0.00041  Score=66.29  Aligned_cols=68  Identities=13%  Similarity=0.129  Sum_probs=45.5

Q ss_pred             HHHHHHHHc--cCCCEEEeeCCCCCCC-------H-HHHHHHHHHHHHHHHhcCcEEEEEeCChh---------------
Q 022663          158 RVQICMGLL--HPFKVLLLDEITVDLD-------V-VARMDLLDFFKDECEQRGATIVYATHIFD---------------  212 (294)
Q Consensus       158 Rv~lAraL~--~~p~iLlLDEPt~gLD-------~-~~~~~l~~~l~~~~~~~g~tviivsHd~~---------------  212 (294)
                      -+..++.+.  .+|+++++|= ...+.       . ....++...|+.++++.+++||+++|--.               
T Consensus       342 i~~~i~~~~~~~~~~lvVID~-l~~l~~~~~~~~~~~~~~~~~~~Lk~lak~~~i~vi~~~q~~r~~~~~~~~~~~~p~l  420 (503)
T 1q57_A          342 LLAKLAYMRSGLGCDVIILDH-ISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSI  420 (503)
T ss_dssp             HHHHHHHHHHTTCCSEEEEEC-TTCCCSCCSCCCHHHHHHHHHHHHHHHHHHHTCEEEEEEECCCCSSSSCSTTCCCCCS
T ss_pred             HHHHHHHHHHhcCCCEEEEcc-chhcCCCCCCCCHHHHHHHHHHHHHHHHHHHCCeEEEEEcCCchhccCccccCCCCCh
Confidence            334444443  4799999993 33332       1 22345777788888889999999998432               


Q ss_pred             -------HHHhhhceEEEeeC
Q 022663          213 -------GLETWATHLAYIQD  226 (294)
Q Consensus       213 -------~~~~~~d~v~~l~~  226 (294)
                             .++..||-|+.|+.
T Consensus       421 ~dlr~s~~ie~~aD~vi~l~r  441 (503)
T 1q57_A          421 TDLRGSGALRQLSDTIIALER  441 (503)
T ss_dssp             SSCSSSSHHHHHCSEEEEEEE
T ss_pred             hhhccchHhhecCcEEEEEEe
Confidence                   24567899988864

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=97.61  E-value=8.5e-05  Score=65.18  Aligned_cols=27  Identities=44%  Similarity=0.614  Sum_probs=23.8

Q ss_pred             EeCCCEEEEECCCCCcHHHHHHHHhCC
Q 022663           39 ISPGSRCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        39 i~~Ge~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      +.++..+.|.||.|+|||||++.++..
T Consensus        48 ~~~~~~~ll~G~~GtGKT~la~~la~~   74 (285)
T 3h4m_A           48 IEPPKGILLYGPPGTGKTLLAKAVATE   74 (285)
T ss_dssp             CCCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred             CCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence            456778999999999999999999873

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=97.61  E-value=0.001  Score=71.74  Aligned_cols=26  Identities=31%  Similarity=0.374  Sum_probs=23.8

Q ss_pred             EeCCCEEEEECCCCCcHHHHHHHHhC
Q 022663           39 ISPGSRCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        39 i~~Ge~~~liG~NGsGKSTLlk~i~G   64 (294)
                      +++|.++.|.||.|+|||||.-.++.
T Consensus       380 l~~G~lilI~G~pGsGKTtLaLq~a~  405 (1706)
T 3cmw_A          380 LPMGRIVEIYGPESSGKTTLTLQVIA  405 (1706)
T ss_dssp             EETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred             cCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence            88999999999999999999877764

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=97.60  E-value=6.8e-05  Score=68.23  Aligned_cols=27  Identities=30%  Similarity=0.511  Sum_probs=23.5

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhCCc
Q 022663           40 SPGSRCLLVGANGSGKTTLLKILAGKH   66 (294)
Q Consensus        40 ~~Ge~~~liG~NGsGKSTLlk~i~G~~   66 (294)
                      ..+..+.|.||.|+|||||++.++...
T Consensus        42 ~~~~~vll~G~~G~GKT~l~~~~~~~~   68 (387)
T 2v1u_A           42 EKPSNALLYGLTGTGKTAVARLVLRRL   68 (387)
T ss_dssp             CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence            567789999999999999999998643

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=97.58  E-value=0.00063  Score=74.31  Aligned_cols=70  Identities=16%  Similarity=0.224  Sum_probs=45.6

Q ss_pred             HHHHHHHHc--cCCCEEEeeCCCCCCC-H------------HHHHHHHHHHHHH---HHhcCcEEEEEeCChh-------
Q 022663          158 RVQICMGLL--HPFKVLLLDEITVDLD-V------------VARMDLLDFFKDE---CEQRGATIVYATHIFD-------  212 (294)
Q Consensus       158 Rv~lAraL~--~~p~iLlLDEPt~gLD-~------------~~~~~l~~~l~~~---~~~~g~tviivsHd~~-------  212 (294)
                      -+.+++.++  .+|+++++|.-++-.. .            ...+.+.+.++.+   +++.+++||+++|-..       
T Consensus       449 il~~~~~lv~~~~~~lIVIDSL~al~~~~e~eg~~Gd~~~~~q~R~is~~Lr~L~~lake~~i~VIlinQl~~~vg~~~g  528 (2050)
T 3cmu_A          449 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFG  528 (2050)
T ss_dssp             HHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECTTCCSS
T ss_pred             HHHHHHHHHHhcCCcEEEECCHHHhhcccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCeEEEEeecccccccccC
Confidence            345555554  5799999999876552 1            1122344444444   6788999999998432       


Q ss_pred             ---------HHHhhhceEEEeeCC
Q 022663          213 ---------GLETWATHLAYIQDG  227 (294)
Q Consensus       213 ---------~~~~~~d~v~~l~~G  227 (294)
                               .++.++|.++.|.+.
T Consensus       529 ~p~~psGg~ale~~ADv~l~L~R~  552 (2050)
T 3cmu_A          529 NPETTTGGNALKFYASVRLDIRRI  552 (2050)
T ss_dssp             CCEECSSHHHHHHHEEEEEEEEEE
T ss_pred             CCcCCCCcchhhhhCCEEEEEEec
Confidence                     366788888887653

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=97.57  E-value=2.3e-05  Score=64.53  Aligned_cols=32  Identities=38%  Similarity=0.343  Sum_probs=27.3

Q ss_pred             EEEeCCCEEEEECCCCCcHHHHHHHHhCCccc
Q 022663           37 LGISPGSRCLLVGANGSGKTTLLKILAGKHMV   68 (294)
Q Consensus        37 l~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~   68 (294)
                      +...+|.+++|+|++||||||+.+.|+..+..
T Consensus         8 ~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~   39 (186)
T 2yvu_A            8 KCIEKGIVVWLTGLPGSGKTTIATRLADLLQK   39 (186)
T ss_dssp             CCCSCCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             cccCCCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence            34457999999999999999999999986544

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=97.56  E-value=9.3e-06  Score=74.27  Aligned_cols=37  Identities=30%  Similarity=0.390  Sum_probs=33.4

Q ss_pred             CceeeeeEEEeCCCE--EEEECCCCCcHHHHHHHHhCCc
Q 022663           30 PLFYDFNLGISPGSR--CLLVGANGSGKTTLLKILAGKH   66 (294)
Q Consensus        30 ~iL~~vsl~i~~Ge~--~~liG~NGsGKSTLlk~i~G~~   66 (294)
                      .+++.+++.+++|++  ++|+|++||||||+.++|++.+
T Consensus        10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l   48 (359)
T 2ga8_A           10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII   48 (359)
T ss_dssp             HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence            377889999999999  9999999999999999998743

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.55  E-value=4.7e-06  Score=75.62  Aligned_cols=49  Identities=20%  Similarity=0.220  Sum_probs=39.8

Q ss_pred             cceEEEcCCCCCCCceeeeeEEEeCCCE--EEEECCCCCcHHHHHHHHhCCccc
Q 022663           17 CGMQFSYEGNDKPPLFYDFNLGISPGSR--CLLVGANGSGKTTLLKILAGKHMV   68 (294)
Q Consensus        17 ~~ls~~y~~~~~~~iL~~vsl~i~~Ge~--~~liG~NGsGKSTLlk~i~G~~~~   68 (294)
                      ++++..|+.   ..+++.++..+..|++  +.+.||+|+||||+++++++.+..
T Consensus        22 ~~~~~~~g~---~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~   72 (340)
T 1sxj_C           22 ETLDEVYGQ---NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG   72 (340)
T ss_dssp             SSGGGCCSC---HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred             CcHHHhcCc---HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcC
Confidence            444445543   4588999999999999  999999999999999999986543

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=97.51  E-value=5e-05  Score=61.08  Aligned_cols=23  Identities=30%  Similarity=0.612  Sum_probs=21.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhCCc
Q 022663           44 RCLLVGANGSGKTTLLKILAGKH   66 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~~   66 (294)
                      .++|+|++|+|||||++.++|..
T Consensus         5 ~v~lvG~~gvGKStL~~~l~~~~   27 (165)
T 2wji_A            5 EIALIGNPNVGKSTIFNALTGEN   27 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHHCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999999853

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=97.49  E-value=3.9e-05  Score=63.37  Aligned_cols=34  Identities=32%  Similarity=0.536  Sum_probs=20.5

Q ss_pred             CceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhC
Q 022663           30 PLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        30 ~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G   64 (294)
                      .+++++++..++. .++|+|++|+|||||++.+++
T Consensus        12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~   45 (190)
T 1m2o_B           12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN   45 (190)
T ss_dssp             ------------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred             HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence            3789999998887 789999999999999999986

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=97.48  E-value=0.00021  Score=60.99  Aligned_cols=60  Identities=18%  Similarity=0.045  Sum_probs=42.7

Q ss_pred             ccCCCEEEeeCCCC----CCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChh----------HHHhhhceEEEee
Q 022663          166 LHPFKVLLLDEITV----DLDVVARMDLLDFFKDECEQRGATIVYATHIFD----------GLETWATHLAYIQ  225 (294)
Q Consensus       166 ~~~p~iLlLDEPt~----gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~----------~~~~~~d~v~~l~  225 (294)
                      ..+|+++++|--+.    .-|.....++...|..++++.+.++++++|-..          .+..+||-|+.|+
T Consensus       133 ~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~~~~~~~~~~~~~~~~~aD~vi~l~  206 (251)
T 2zts_A          133 AINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD  206 (251)
T ss_dssp             HTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred             hcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEecccccccccCCceeEEeeEEEEEE
Confidence            45789999985431    124556667788888888899999999998532          2345688888775

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.46  E-value=5.1e-05  Score=62.18  Aligned_cols=25  Identities=32%  Similarity=0.490  Sum_probs=22.2

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhC
Q 022663           40 SPGSRCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        40 ~~Ge~~~liG~NGsGKSTLlk~i~G   64 (294)
                      .+|.+++|+|++||||||+.+.|+.
T Consensus         2 ~~g~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            2 DVGQAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3678999999999999999999984

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.45  E-value=6e-05  Score=62.90  Aligned_cols=24  Identities=25%  Similarity=0.469  Sum_probs=21.8

Q ss_pred             CCEEEEECCCCCcHHHHHHHHhCC
Q 022663           42 GSRCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        42 Ge~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      ..+++|+|++|||||||.+.|++.
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~   41 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEA   41 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            568999999999999999999874

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=97.44  E-value=0.00054  Score=64.59  Aligned_cols=54  Identities=9%  Similarity=0.140  Sum_probs=39.3

Q ss_pred             CCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcE--EEEEeC
Q 022663          151 VSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGAT--IVYATH  209 (294)
Q Consensus       151 LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~t--viivsH  209 (294)
                      |+..+.+|+.-|...+.+.+++|.|+|.  +++   .++...++++.++.+..  +|+|-+
T Consensus       263 l~~~~~~~l~~a~~~l~~~~l~i~d~~~--~s~---~~i~~~ir~l~~~~~~~~~lIVID~  318 (444)
T 3bgw_A          263 FASEDWGKLSMAIGEISNSNINIFDKAG--QSV---NYIWSKTRQTKRKNPGKRVIVMIDY  318 (444)
T ss_dssp             TCCSCHHHHHHHHHHHHTSCEEEECCSS--CBH---HHHHHHHHHHHHHSCSSCEEEEEEC
T ss_pred             CCHHHHHHHHHHHHHHhcCCEEEECCCC--CCH---HHHHHHHHHHHHHhCCCCeEEEEec
Confidence            8888888988888888788899988874  444   34555566665566777  877754

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=97.43  E-value=6.2e-05  Score=64.61  Aligned_cols=26  Identities=31%  Similarity=0.348  Sum_probs=23.5

Q ss_pred             EeCCCEEEEECCCCCcHHHHHHHHhC
Q 022663           39 ISPGSRCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        39 i~~Ge~~~liG~NGsGKSTLlk~i~G   64 (294)
                      -.+|.+++|+|++||||||+.++|++
T Consensus        13 ~~~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           13 KMKTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence            46789999999999999999999986

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=97.39  E-value=6.7e-05  Score=63.18  Aligned_cols=31  Identities=32%  Similarity=0.335  Sum_probs=27.9

Q ss_pred             EEEeCCCEEEEECCCCCcHHHHHHHHhCCcc
Q 022663           37 LGISPGSRCLLVGANGSGKTTLLKILAGKHM   67 (294)
Q Consensus        37 l~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~   67 (294)
                      +.+.+|.+++|+|++||||||+.+.|++.+.
T Consensus        20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~   50 (211)
T 1m7g_A           20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLV   50 (211)
T ss_dssp             HHTSSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             ccCCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence            5578899999999999999999999998654

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=97.37  E-value=5.7e-05  Score=65.45  Aligned_cols=34  Identities=41%  Similarity=0.624  Sum_probs=24.6

Q ss_pred             ceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCc
Q 022663           31 LFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKH   66 (294)
Q Consensus        31 iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~   66 (294)
                      .++++++.++.|  +.|+||+|+|||||+++|++..
T Consensus        36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~   69 (257)
T 1lv7_A           36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEA   69 (257)
T ss_dssp             GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHH
T ss_pred             HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHc
Confidence            455666666666  8999999999999999999843

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=97.37  E-value=9.5e-05  Score=60.27  Aligned_cols=22  Identities=32%  Similarity=0.622  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .++|+|++|+|||||++.++|.
T Consensus         9 ~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            9 EIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999984

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=97.35  E-value=0.0001  Score=60.26  Aligned_cols=22  Identities=50%  Similarity=0.765  Sum_probs=20.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .++|+|++|+|||||++.++|.
T Consensus         4 kv~ivG~~gvGKStLl~~l~~~   25 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLLQQLMKT   25 (184)
T ss_dssp             EEEEESCTTSSHHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999995

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=97.34  E-value=0.00028  Score=60.37  Aligned_cols=52  Identities=19%  Similarity=0.234  Sum_probs=37.6

Q ss_pred             CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC----------hhHHHhhhceEEEee
Q 022663          168 PFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHI----------FDGLETWATHLAYIQ  225 (294)
Q Consensus       168 ~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd----------~~~~~~~~d~v~~l~  225 (294)
                      +++++++||--. |+..    +.+.+..++. .|.+||++-|+          ...+..+||+|..|.
T Consensus        89 ~~dvViIDEaQ~-l~~~----~ve~l~~L~~-~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~  150 (223)
T 2b8t_A           89 ETKVIGIDEVQF-FDDR----ICEVANILAE-NGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT  150 (223)
T ss_dssp             TCCEEEECSGGG-SCTH----HHHHHHHHHH-TTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred             CCCEEEEecCcc-CcHH----HHHHHHHHHh-CCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence            589999999854 6653    3444555554 48999999994          244566899999875

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.32  E-value=0.00011  Score=59.14  Aligned_cols=21  Identities=24%  Similarity=0.207  Sum_probs=19.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 022663           44 RCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G   64 (294)
                      +++|+|++||||||+.+.|+.
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~   23 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSK   23 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999985

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=97.32  E-value=0.0027  Score=59.67  Aligned_cols=27  Identities=41%  Similarity=0.444  Sum_probs=23.4

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCcc
Q 022663           41 PGSRCLLVGANGSGKTTLLKILAGKHM   67 (294)
Q Consensus        41 ~Ge~~~liG~NGsGKSTLlk~i~G~~~   67 (294)
                      ++.+++++|++|+||||++..|+..+.
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~  125 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQ  125 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence            467999999999999999999986444

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.31  E-value=0.00014  Score=59.14  Aligned_cols=24  Identities=21%  Similarity=0.403  Sum_probs=21.8

Q ss_pred             CCEEEEECCCCCcHHHHHHHHhCC
Q 022663           42 GSRCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        42 Ge~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      |.++.|+|++||||||+.+.|+..
T Consensus         3 ~~~i~l~G~~GsGKST~a~~La~~   26 (178)
T 1qhx_A            3 TRMIILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHh
Confidence            578999999999999999999863

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=97.28  E-value=0.00013  Score=67.68  Aligned_cols=28  Identities=21%  Similarity=0.393  Sum_probs=25.0

Q ss_pred             EEeCCCEEEEECCCCCcHHHHHHHHhCC
Q 022663           38 GISPGSRCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        38 ~i~~Ge~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .+..|..++|+|+||+|||||++.|+|.
T Consensus        18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~   45 (396)
T 2ohf_A           18 RFGTSLKIGIVGLPNVGKSTFFNVLTNS   45 (396)
T ss_dssp             CSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred             hccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence            5568889999999999999999999995

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.25  E-value=0.00012  Score=60.16  Aligned_cols=26  Identities=35%  Similarity=0.333  Sum_probs=22.7

Q ss_pred             CEEEEECCCCCcHHHHHHHHhCCccc
Q 022663           43 SRCLLVGANGSGKTTLLKILAGKHMV   68 (294)
Q Consensus        43 e~~~liG~NGsGKSTLlk~i~G~~~~   68 (294)
                      .+++|+|++|||||||++.|.+.+..
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~l~~   32 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPALCA   32 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhccc
Confidence            58999999999999999999886543

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=97.22  E-value=7.3e-05  Score=64.96  Aligned_cols=34  Identities=26%  Similarity=0.264  Sum_probs=27.9

Q ss_pred             eeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCc
Q 022663           32 FYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKH   66 (294)
Q Consensus        32 L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~   66 (294)
                      +.+.. ....+.++.|+|++||||||+.+.|+..+
T Consensus        23 ~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~l   56 (253)
T 2p5t_B           23 TRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKEF   56 (253)
T ss_dssp             HTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred             HccCC-cccCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence            34444 56788999999999999999999998743

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.21  E-value=0.00019  Score=58.73  Aligned_cols=23  Identities=22%  Similarity=0.342  Sum_probs=21.3

Q ss_pred             CCEEEEECCCCCcHHHHHHHHhC
Q 022663           42 GSRCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        42 Ge~~~liG~NGsGKSTLlk~i~G   64 (294)
                      |.+++|.|++||||||+.+.|+-
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            67899999999999999999975

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=97.21  E-value=0.00012  Score=65.58  Aligned_cols=25  Identities=32%  Similarity=0.371  Sum_probs=22.3

Q ss_pred             CCEEEEECCCCCcHHHHHHHHhCCc
Q 022663           42 GSRCLLVGANGSGKTTLLKILAGKH   66 (294)
Q Consensus        42 Ge~~~liG~NGsGKSTLlk~i~G~~   66 (294)
                      +..+.|.||.|+|||+|+++|+...
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~~  176 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHEL  176 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHH
Confidence            6789999999999999999998743

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=97.17  E-value=0.00028  Score=66.32  Aligned_cols=23  Identities=30%  Similarity=0.546  Sum_probs=21.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhCCc
Q 022663           44 RCLLVGANGSGKTTLLKILAGKH   66 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~~   66 (294)
                      .++|+|+||||||||++.|+|..
T Consensus       182 kvaivG~~gvGKSTLln~l~g~~  204 (439)
T 1mky_A          182 KVAIVGRPNVGKSTLFNAILNKE  204 (439)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTST
T ss_pred             eEEEECCCCCCHHHHHHHHhCCc
Confidence            79999999999999999999964

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=97.17  E-value=0.00019  Score=61.81  Aligned_cols=23  Identities=26%  Similarity=0.361  Sum_probs=21.0

Q ss_pred             CCEEEEECCCCCcHHHHHHHHhC
Q 022663           42 GSRCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        42 Ge~~~liG~NGsGKSTLlk~i~G   64 (294)
                      .-+++|.||+||||||+.+.|+.
T Consensus         9 ~~~i~i~G~~GsGKsTla~~la~   31 (233)
T 3r20_A            9 SLVVAVDGPAGTGKSSVSRGLAR   31 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45899999999999999999984

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=97.17  E-value=0.0022  Score=55.07  Aligned_cols=26  Identities=38%  Similarity=0.505  Sum_probs=22.2

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhCC
Q 022663           40 SPGSRCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        40 ~~Ge~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      ....-+.|.||.|+|||||.+.++..
T Consensus        37 ~~~~~vll~G~~GtGKT~la~~la~~   62 (262)
T 2qz4_A           37 KVPKGALLLGPPGCGKTLLAKAVATE   62 (262)
T ss_dssp             CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHH
Confidence            44556899999999999999999873

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=97.17  E-value=8.6e-05  Score=63.66  Aligned_cols=44  Identities=11%  Similarity=0.092  Sum_probs=27.4

Q ss_pred             HccCCCEEEeeCCCCC-CCHHHHHHHHHHHHHHHHhcCcEEEEEeC
Q 022663          165 LLHPFKVLLLDEITVD-LDVVARMDLLDFFKDECEQRGATIVYATH  209 (294)
Q Consensus       165 L~~~p~iLlLDEPt~g-LD~~~~~~l~~~l~~~~~~~g~tviivsH  209 (294)
                      +..+|+++|+|||-.- .+.......++.+.... ..|..|+.++|
T Consensus        81 L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l-~sgidVitT~N  125 (228)
T 2r8r_A           81 LKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELL-AAGIDVYTTVN  125 (228)
T ss_dssp             HHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHH-HTTCEEEEEEE
T ss_pred             HhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHH-cCCCCEEEEcc
Confidence            3458999999998642 33222223344444433 45888999988

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.17  E-value=0.00021  Score=57.29  Aligned_cols=19  Identities=42%  Similarity=0.693  Sum_probs=18.3

Q ss_pred             EEEEECCCCCcHHHHHHHH
Q 022663           44 RCLLVGANGSGKTTLLKIL   62 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i   62 (294)
                      +++|+|++||||||+.+.|
T Consensus         3 ~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            3 VILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             EEEEECCTTSCHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            7899999999999999999

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=97.15  E-value=0.0014  Score=59.83  Aligned_cols=26  Identities=38%  Similarity=0.580  Sum_probs=22.6

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhCC
Q 022663           40 SPGSRCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        40 ~~Ge~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .+...+.|.||.|+|||||++.|+..
T Consensus       115 ~~~~~vLl~GppGtGKT~la~aia~~  140 (357)
T 3d8b_A          115 GPPKGILLFGPPGTGKTLIGKCIASQ  140 (357)
T ss_dssp             SCCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHH
Confidence            35667999999999999999999863

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.14  E-value=0.00019  Score=58.94  Aligned_cols=25  Identities=32%  Similarity=0.410  Sum_probs=22.4

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhC
Q 022663           40 SPGSRCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        40 ~~Ge~~~liG~NGsGKSTLlk~i~G   64 (294)
                      .++.++.|+|++||||||+.+.|+-
T Consensus         3 ~~~~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            3 QTPALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             SCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4577899999999999999999974

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=97.13  E-value=0.00016  Score=59.03  Aligned_cols=24  Identities=50%  Similarity=0.455  Sum_probs=22.1

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHh
Q 022663           40 SPGSRCLLVGANGSGKTTLLKILA   63 (294)
Q Consensus        40 ~~Ge~~~liG~NGsGKSTLlk~i~   63 (294)
                      ..+.++.|+|++||||||+.+.|+
T Consensus         9 ~~~~~i~i~G~~GsGKst~~~~l~   32 (180)
T 3iij_A            9 MLLPNILLTGTPGVGKTTLGKELA   32 (180)
T ss_dssp             CCCCCEEEECSTTSSHHHHHHHHH
T ss_pred             ccCCeEEEEeCCCCCHHHHHHHHH
Confidence            467889999999999999999998

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=97.13  E-value=0.00024  Score=59.90  Aligned_cols=24  Identities=33%  Similarity=0.379  Sum_probs=21.6

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhC
Q 022663           41 PGSRCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        41 ~Ge~~~liG~NGsGKSTLlk~i~G   64 (294)
                      .+-+++|+|++||||||+.+.|+.
T Consensus         3 ~~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            3 LRYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            345899999999999999999986

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=97.12  E-value=0.00021  Score=58.12  Aligned_cols=21  Identities=43%  Similarity=0.648  Sum_probs=19.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 022663           44 RCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G   64 (294)
                      +++|+|++||||||+.+.|+.
T Consensus         6 ~i~i~G~~GsGKsTla~~La~   26 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAK   26 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            589999999999999999986

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=97.11  E-value=0.00025  Score=58.64  Aligned_cols=21  Identities=24%  Similarity=0.480  Sum_probs=19.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 022663           44 RCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G   64 (294)
                      +++|+|++||||||+.+.|+.
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            689999999999999999986

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.09  E-value=0.00025  Score=59.00  Aligned_cols=20  Identities=45%  Similarity=0.725  Sum_probs=18.2

Q ss_pred             EEEECCCCCcHHHHHHHHhC
Q 022663           45 CLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        45 ~~liG~NGsGKSTLlk~i~G   64 (294)
                      +.|+||||||||||++.|.-
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~   23 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFA   23 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999998864

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=97.07  E-value=0.00027  Score=61.42  Aligned_cols=21  Identities=33%  Similarity=0.381  Sum_probs=19.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 022663           44 RCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G   64 (294)
                      +++|+||+|||||||.+.|++
T Consensus         3 li~I~G~~GSGKSTla~~La~   23 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQ   23 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            689999999999999999986

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=97.07  E-value=0.00032  Score=57.36  Aligned_cols=24  Identities=33%  Similarity=0.392  Sum_probs=21.2

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhC
Q 022663           41 PGSRCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        41 ~Ge~~~liG~NGsGKSTLlk~i~G   64 (294)
                      .+.++.|+|+.||||||+.+.|+-
T Consensus         4 ~~~~i~l~G~~GsGKst~a~~La~   27 (185)
T 3trf_A            4 NLTNIYLIGLMGAGKTSVGSQLAK   27 (185)
T ss_dssp             -CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            367899999999999999999974

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=97.06  E-value=0.00034  Score=64.59  Aligned_cols=48  Identities=19%  Similarity=0.081  Sum_probs=38.0

Q ss_pred             cCCCEEEeeCCCCCCC---HHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHH
Q 022663          167 HPFKVLLLDEITVDLD---VVARMDLLDFFKDECEQRGATIVYATHIFDGLE  215 (294)
Q Consensus       167 ~~p~iLlLDEPt~gLD---~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~  215 (294)
                      ..|.++++||--.-++   +.....+.+++++. +++|..++++||++..+.
T Consensus       261 ~~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~-Rk~g~~~~~~tQ~~~d~~  311 (392)
T 4ag6_A          261 RERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRI-RKYNGSLIVISQNVIDFL  311 (392)
T ss_dssp             CTTCEEEETTGGGGCCTTCTHHHHHHHHHHHHG-GGGTCEEEEEESCGGGGG
T ss_pred             CccEEEEEecHHHHhCcCchHHHHHHHHHHHHh-hhhCeEEEEEcCCHHHhh
Confidence            3588999999988884   56666777777664 678999999999987654

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=97.06  E-value=0.0039  Score=68.27  Aligned_cols=29  Identities=31%  Similarity=0.398  Sum_probs=26.0

Q ss_pred             EEeCCCEEEEECCCCCcHHHHHHHHhCCc
Q 022663           38 GISPGSRCLLVGANGSGKTTLLKILAGKH   66 (294)
Q Consensus        38 ~i~~Ge~~~liG~NGsGKSTLlk~i~G~~   66 (294)
                      -+++|+++.|.|+.|+|||||+..++...
T Consensus       728 Gl~~G~lilIaG~PG~GKTtLalqlA~~~  756 (2050)
T 3cmu_A          728 GLPMGRIVEIYGPESSGKTTLTLQVIAAA  756 (2050)
T ss_dssp             SEETTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CcCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            48899999999999999999999888643

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=97.04  E-value=0.00038  Score=57.71  Aligned_cols=26  Identities=27%  Similarity=0.268  Sum_probs=23.4

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCc
Q 022663           41 PGSRCLLVGANGSGKTTLLKILAGKH   66 (294)
Q Consensus        41 ~Ge~~~liG~NGsGKSTLlk~i~G~~   66 (294)
                      +|-+++|+|+.||||||+.+.|+-.+
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~~l   28 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIMESI   28 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            67899999999999999999998643

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.04  E-value=0.00033  Score=56.68  Aligned_cols=22  Identities=32%  Similarity=0.471  Sum_probs=20.0

Q ss_pred             CEEEEECCCCCcHHHHHHHHhC
Q 022663           43 SRCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        43 e~~~liG~NGsGKSTLlk~i~G   64 (294)
                      .++.|.|++||||||+.+.|+.
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            3689999999999999999985

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=97.01  E-value=0.00031  Score=61.49  Aligned_cols=51  Identities=14%  Similarity=0.011  Sum_probs=40.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCC
Q 022663          177 ITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDG  227 (294)
Q Consensus       177 Pt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G  227 (294)
                      ||++++.....++++.+.+...+...+..+.+|..+.+++.++++...-.+
T Consensus       144 ~~Sa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~e~~~~~l~~~~~~  194 (271)
T 3k53_A          144 PTNAKKGEGVEELKRMIALMAEGKVTTNPIIPRYDEDIEREIKHISELLRG  194 (271)
T ss_dssp             ECBGGGTBTHHHHHHHHHHHHHTCCCCCCCCCCCCHHHHHHHHHHHHHHHS
T ss_pred             EEEeCCCCCHHHHHHHHHHHHhccccCCCCCcCCCHHHHHHHHHHHHHHhh
Confidence            899999999999999998887665556677888888888888887544333

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=97.00  E-value=0.00034  Score=57.87  Aligned_cols=23  Identities=30%  Similarity=0.355  Sum_probs=21.0

Q ss_pred             CCEEEEECCCCCcHHHHHHHHhC
Q 022663           42 GSRCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        42 Ge~~~liG~NGsGKSTLlk~i~G   64 (294)
                      ..+++|+|++||||||+.+.|+.
T Consensus         8 ~~~I~i~G~~GsGKST~~~~La~   30 (203)
T 1uf9_A            8 PIIIGITGNIGSGKSTVAALLRS   30 (203)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999986

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.99  E-value=0.00016  Score=60.45  Aligned_cols=24  Identities=33%  Similarity=0.549  Sum_probs=21.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhCCcc
Q 022663           44 RCLLVGANGSGKTTLLKILAGKHM   67 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~~~   67 (294)
                      +++|.|++||||||+++.|+..+.
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~   25 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFR   25 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHH
Confidence            689999999999999999987543

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=96.96  E-value=0.00041  Score=57.05  Aligned_cols=25  Identities=28%  Similarity=0.363  Sum_probs=22.5

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhC
Q 022663           40 SPGSRCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        40 ~~Ge~~~liG~NGsGKSTLlk~i~G   64 (294)
                      .++-+++|+|+.||||||+.+.|+-
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~La~   31 (196)
T 2c95_A            7 KKTNIIFVVGGPGSGKGTQCEKIVQ   31 (196)
T ss_dssp             TTSCEEEEEECTTSSHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHH
Confidence            4677999999999999999999974

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=96.96  E-value=0.00042  Score=57.61  Aligned_cols=25  Identities=28%  Similarity=0.408  Sum_probs=22.3

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhCC
Q 022663           41 PGSRCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        41 ~Ge~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      +|-+++|.|+.||||||+.+.|+-.
T Consensus         3 ~~~~I~i~G~~GsGKsT~~~~L~~~   27 (213)
T 2plr_A            3 KGVLIAFEGIDGSGKSSQATLLKDW   27 (213)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            4678999999999999999999863

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=96.96  E-value=0.00035  Score=61.99  Aligned_cols=26  Identities=35%  Similarity=0.460  Sum_probs=22.9

Q ss_pred             EeCCCEEEEECCCCCcHHHHHHHHhC
Q 022663           39 ISPGSRCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        39 i~~Ge~~~liG~NGsGKSTLlk~i~G   64 (294)
                      -..|.++.|.||+||||||+.+.|+.
T Consensus        30 ~~~~~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           30 VESPTAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             CSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34577999999999999999999975

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=96.95  E-value=0.00044  Score=57.65  Aligned_cols=25  Identities=32%  Similarity=0.428  Sum_probs=22.8

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhC
Q 022663           40 SPGSRCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        40 ~~Ge~~~liG~NGsGKSTLlk~i~G   64 (294)
                      .+|-+++|.|+.||||||+.+.|+-
T Consensus         8 ~~~~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A            8 KKGKFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             BCSCEEEEEESTTSSHHHHHHHHHH
T ss_pred             hcCCEEEEEcCCCCCHHHHHHHHHH
Confidence            4688999999999999999999975

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=96.91  E-value=0.00049  Score=57.41  Aligned_cols=26  Identities=27%  Similarity=0.378  Sum_probs=23.1

Q ss_pred             EeCCCEEEEECCCCCcHHHHHHHHhC
Q 022663           39 ISPGSRCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        39 i~~Ge~~~liG~NGsGKSTLlk~i~G   64 (294)
                      ..+|-+++|.|+.||||||+.+.|+-
T Consensus         6 ~~~~~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A            6 ARRGALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             -CCCCEEEEEESTTSSHHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence            35788999999999999999999985

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=96.91  E-value=0.00047  Score=56.42  Aligned_cols=23  Identities=22%  Similarity=0.309  Sum_probs=20.7

Q ss_pred             CCEEEEECCCCCcHHHHHHHHhC
Q 022663           42 GSRCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        42 Ge~~~liG~NGsGKSTLlk~i~G   64 (294)
                      +.+++|+|+.||||||+.+.|+-
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            56899999999999999999874

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=96.87  E-value=0.00049  Score=56.21  Aligned_cols=22  Identities=27%  Similarity=0.400  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      +++|.|+.||||||+.+.|+-.
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~~   24 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKEI   24 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999999863

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=96.85  E-value=0.00057  Score=56.71  Aligned_cols=22  Identities=23%  Similarity=0.375  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      +++|.|++||||||+.+.|+..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~   25 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAA   25 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            8999999999999999999873

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=96.85  E-value=0.00041  Score=56.42  Aligned_cols=24  Identities=25%  Similarity=0.246  Sum_probs=17.3

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhC
Q 022663           41 PGSRCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        41 ~Ge~~~liG~NGsGKSTLlk~i~G   64 (294)
                      ++.++.|.|++||||||+.+.|+-
T Consensus         4 ~~~~I~l~G~~GsGKST~a~~La~   27 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTAHTLHE   27 (183)
T ss_dssp             -CCEEEEECCC----CHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            567899999999999999999974

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.83  E-value=0.00064  Score=55.59  Aligned_cols=25  Identities=32%  Similarity=0.381  Sum_probs=21.7

Q ss_pred             CEEEEECCCCCcHHHHHHHHhCCcc
Q 022663           43 SRCLLVGANGSGKTTLLKILAGKHM   67 (294)
Q Consensus        43 e~~~liG~NGsGKSTLlk~i~G~~~   67 (294)
                      .+++|+|++|||||||+..|+..+.
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~~l~   29 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVAAAV   29 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhhH
Confidence            4799999999999999999987544

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=96.81  E-value=0.00095  Score=63.69  Aligned_cols=26  Identities=35%  Similarity=0.603  Sum_probs=22.5

Q ss_pred             EeCCCEEEEECCCCCcHHHHHHHHhC
Q 022663           39 ISPGSRCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        39 i~~Ge~~~liG~NGsGKSTLlk~i~G   64 (294)
                      +.+..-+.|.||+|+|||+|.+.|+.
T Consensus       235 ~~~~~~vLL~GppGtGKT~lAraia~  260 (489)
T 3hu3_A          235 VKPPRGILLYGPPGTGKTLIARAVAN  260 (489)
T ss_dssp             CCCCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCCcEEEECcCCCCHHHHHHHHHH
Confidence            35556699999999999999999986

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=96.80  E-value=0.0022  Score=64.56  Aligned_cols=25  Identities=36%  Similarity=0.601  Sum_probs=21.7

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhCC
Q 022663           41 PGSRCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        41 ~Ge~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      +-.-+.|.||.|+|||||.|.+++.
T Consensus       237 ~p~GILL~GPPGTGKT~LAraiA~e  261 (806)
T 3cf2_A          237 PPRGILLYGPPGTGKTLIARAVANE  261 (806)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHTT
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHH
Confidence            3344899999999999999999984

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=96.80  E-value=0.00067  Score=59.69  Aligned_cols=22  Identities=36%  Similarity=0.715  Sum_probs=20.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .++|+|++|||||||++.++|.
T Consensus         5 kI~lvG~~nvGKSTL~n~L~g~   26 (272)
T 3b1v_A            5 EIALIGNPNSGKTSLFNLITGH   26 (272)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            5899999999999999999995

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=96.77  E-value=0.0023  Score=60.89  Aligned_cols=72  Identities=15%  Similarity=0.242  Sum_probs=55.7

Q ss_pred             ccccCCHHHHHHHHHHHHHc--c---------------CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeC
Q 022663          147 RMHKVSDGQRRRVQICMGLL--H---------------PFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATH  209 (294)
Q Consensus       147 ~~~~LSgGqkqRv~lAraL~--~---------------~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsH  209 (294)
                      ..+.+||||+|-..+|.+-+  +               .-.+++|||. +-+|.......++++++    .|.-+|+++-
T Consensus       376 ~~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~----lglQliiatP  450 (483)
T 3euj_A          376 ESSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCER----LDMQLLIAAP  450 (483)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHH----TTCEEEEEES
T ss_pred             ccCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHH----cCCEEEEECc
Confidence            35689999999654444332  2               2258999999 99999999998888764    5899999998


Q ss_pred             ChhHHHhhhceEEEee
Q 022663          210 IFDGLETWATHLAYIQ  225 (294)
Q Consensus       210 d~~~~~~~~d~v~~l~  225 (294)
                      +  .+..++|.++.+-
T Consensus       451 ~--~i~p~v~~~~~~~  464 (483)
T 3euj_A          451 E--NISPERGTTYKLV  464 (483)
T ss_dssp             S--SCCCSSSEEEECC
T ss_pred             c--hhhhccCceEEEE
Confidence            8  5667788888764

>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14

Probab=96.76  E-value=0.0026  Score=52.95  Aligned_cols=52  Identities=21%  Similarity=0.280  Sum_probs=37.7

Q ss_pred             CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCh----------hHHHhhhceEEEee
Q 022663          168 PFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIF----------DGLETWATHLAYIQ  225 (294)
Q Consensus       168 ~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~----------~~~~~~~d~v~~l~  225 (294)
                      +.+++++||--- +|+..    ++.+..+... ++.||+..+|.          ..+..+||.|..|.
T Consensus        81 ~~dvViIDEaqf-l~~~~----v~~l~~l~~~-~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~  142 (191)
T 1xx6_A           81 DTEVIAIDEVQF-FDDEI----VEIVNKIAES-GRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ  142 (191)
T ss_dssp             TCSEEEECSGGG-SCTHH----HHHHHHHHHT-TCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred             cCCEEEEECCCC-CCHHH----HHHHHHHHhC-CCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence            579999999543 76543    4455555544 89999999865          45667899998775

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.74  E-value=0.00076  Score=55.50  Aligned_cols=27  Identities=26%  Similarity=0.373  Sum_probs=23.5

Q ss_pred             EEeCCCEEEEECCCCCcHHHHHHHHhC
Q 022663           38 GISPGSRCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        38 ~i~~Ge~~~liG~NGsGKSTLlk~i~G   64 (294)
                      .+..+-+++|+|+.||||||+.+.|+-
T Consensus         8 ~~~~~~~I~l~G~~GsGKsT~a~~L~~   34 (199)
T 2bwj_A            8 DLRKCKIIFIIGGPGSGKGTQCEKLVE   34 (199)
T ss_dssp             HHHHSCEEEEEECTTSSHHHHHHHHHH
T ss_pred             ccCCCCEEEEECCCCCCHHHHHHHHHH
Confidence            345677999999999999999999975

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=96.74  E-value=0.00073  Score=55.00  Aligned_cols=22  Identities=59%  Similarity=0.827  Sum_probs=20.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .++|+|++|+|||||++.+++.
T Consensus        18 ki~ivG~~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A           18 RILLLGLDNAGKTTLLKQLASE   39 (181)
T ss_dssp             EEEEEESTTSSHHHHHHHHCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6899999999999999999984

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=96.73  E-value=0.00092  Score=56.36  Aligned_cols=24  Identities=33%  Similarity=0.452  Sum_probs=21.8

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhC
Q 022663           41 PGSRCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        41 ~Ge~~~liG~NGsGKSTLlk~i~G   64 (294)
                      +|-+++|+|+.||||||+.+.|+-
T Consensus         3 ~~~~I~l~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A            3 ESIRMVLIGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            567899999999999999999975

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=96.73  E-value=0.00067  Score=55.44  Aligned_cols=23  Identities=35%  Similarity=0.634  Sum_probs=21.0

Q ss_pred             CEEEEECCCCCcHHHHHHHHhCC
Q 022663           43 SRCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        43 e~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      =.++|+|+.|||||||++.+++.
T Consensus        49 ~~i~vvG~~g~GKSsll~~l~~~   71 (193)
T 2ged_A           49 PSIIIAGPQNSGKTSLLTLLTTD   71 (193)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            37999999999999999999874

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=96.71  E-value=0.0008  Score=53.31  Aligned_cols=22  Identities=45%  Similarity=0.833  Sum_probs=20.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .++|+|+.|+|||||++.++|.
T Consensus         4 ki~~vG~~~~GKSsli~~l~~~   25 (166)
T 3q72_A            4 KVLLLGAPGVGKSALARIFGGV   25 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHCCC
T ss_pred             EEEEECCCCCCHHHHHHHHcCc
Confidence            4799999999999999999984

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=96.71  E-value=0.00084  Score=56.95  Aligned_cols=25  Identities=32%  Similarity=0.440  Sum_probs=21.3

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhC
Q 022663           40 SPGSRCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        40 ~~Ge~~~liG~NGsGKSTLlk~i~G   64 (294)
                      .++-+++|+|+.||||||+.+.|+-
T Consensus         5 ~~~~~I~l~G~~GsGKsT~a~~La~   29 (227)
T 1zd8_A            5 ARLLRAVIMGAPGSGKGTVSSRITT   29 (227)
T ss_dssp             --CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHHH
Confidence            3567899999999999999999984

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=96.71  E-value=0.00084  Score=56.27  Aligned_cols=21  Identities=29%  Similarity=0.441  Sum_probs=19.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 022663           44 RCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G   64 (294)
                      +++|+|+.||||||+.+.|+-
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIE   22 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999964

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.70  E-value=0.0072  Score=56.72  Aligned_cols=27  Identities=44%  Similarity=0.632  Sum_probs=22.5

Q ss_pred             EeCCCEEEEECCCCCcHHHHHHHHhCC
Q 022663           39 ISPGSRCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        39 i~~Ge~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      +.+-.=+.|.||.|+|||+|.++|++.
T Consensus       212 ~~~prGvLL~GPPGtGKTllAkAiA~e  238 (437)
T 4b4t_L          212 IKPPKGVLLYGPPGTGKTLLAKAVAAT  238 (437)
T ss_dssp             CCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence            334445999999999999999999984

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.69  E-value=0.0008  Score=54.13  Aligned_cols=22  Identities=41%  Similarity=0.537  Sum_probs=19.9

Q ss_pred             CEEEEECCCCCcHHHHHHHHhC
Q 022663           43 SRCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        43 e~~~liG~NGsGKSTLlk~i~G   64 (294)
                      .+++|+|+.||||||+.+.|+-
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELAR   24 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999975

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=96.67  E-value=0.001  Score=53.05  Aligned_cols=22  Identities=50%  Similarity=0.863  Sum_probs=20.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .++|+|+.|+|||||++.+.|.
T Consensus         6 ki~i~G~~~vGKSsl~~~l~~~   27 (175)
T 2nzj_A            6 RVVLLGDPGVGKTSLASLFAGK   27 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCccHHHHHHHHhcC
Confidence            4899999999999999999984

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.67  E-value=0.00093  Score=54.63  Aligned_cols=21  Identities=43%  Similarity=0.422  Sum_probs=19.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 022663           44 RCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G   64 (294)
                      +++|.|+.||||||+.+.|+-
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999975

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.66  E-value=0.0011  Score=53.35  Aligned_cols=23  Identities=35%  Similarity=0.437  Sum_probs=20.5

Q ss_pred             CCEEEEECCCCCcHHHHHHHHhC
Q 022663           42 GSRCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        42 Ge~~~liG~NGsGKSTLlk~i~G   64 (294)
                      -++++|+|+.||||||+.+.|+-
T Consensus         7 ~~~i~l~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A            7 MQHLVLIGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHHH
T ss_pred             cceEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999999975

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=96.66  E-value=0.0011  Score=54.90  Aligned_cols=24  Identities=42%  Similarity=0.501  Sum_probs=21.5

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhC
Q 022663           41 PGSRCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        41 ~Ge~~~liG~NGsGKSTLlk~i~G   64 (294)
                      .+-+++|+|+.||||||+.+.|+-
T Consensus        19 ~~~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           19 SHMRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999999975

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.65  E-value=0.001  Score=53.25  Aligned_cols=21  Identities=38%  Similarity=0.496  Sum_probs=19.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 022663           44 RCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G   64 (294)
                      +++|.|+.||||||+.+.|+-
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999975

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.65  E-value=0.00085  Score=56.65  Aligned_cols=24  Identities=25%  Similarity=0.378  Sum_probs=21.3

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhC
Q 022663           41 PGSRCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        41 ~Ge~~~liG~NGsGKSTLlk~i~G   64 (294)
                      .+-++.|+|+.||||||+.+.|+-
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~   27 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKT   27 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            456799999999999999999974

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=96.64  E-value=0.0011  Score=52.53  Aligned_cols=22  Identities=32%  Similarity=0.522  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .++|+|+.|+|||||++.+.+.
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~   26 (172)
T 2erx_A            5 RVAVFGAGGVGKSSLVLRFVKG   26 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4899999999999999999873

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=96.64  E-value=0.0011  Score=52.62  Aligned_cols=22  Identities=41%  Similarity=0.726  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .++|+|+.|+|||||++.++|.
T Consensus         4 ki~ivG~~~~GKSsli~~l~~~   25 (169)
T 3q85_A            4 KVMLVGESGVGKSTLAGTFGGL   25 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            4789999999999999999874

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.64  E-value=0.00092  Score=54.53  Aligned_cols=22  Identities=45%  Similarity=0.665  Sum_probs=20.0

Q ss_pred             CEEEEECCCCCcHHHHHHHHhC
Q 022663           43 SRCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        43 e~~~liG~NGsGKSTLlk~i~G   64 (294)
                      .+++|+|+.||||||+.+.|+-
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999974

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=96.63  E-value=0.001  Score=55.79  Aligned_cols=21  Identities=29%  Similarity=0.390  Sum_probs=19.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 022663           44 RCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G   64 (294)
                      .++|+|+.||||||+.+.|+-
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999974

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=96.63  E-value=0.0011  Score=53.11  Aligned_cols=22  Identities=36%  Similarity=0.690  Sum_probs=20.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .++|+|+.|+|||||++.+.+.
T Consensus        11 ~i~v~G~~~~GKssl~~~l~~~   32 (181)
T 3tw8_B           11 KLLIIGDSGVGKSSLLLRFADN   32 (181)
T ss_dssp             EEEEECCTTSCHHHHHHHHCSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4799999999999999999874

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.60  E-value=0.001  Score=54.33  Aligned_cols=23  Identities=26%  Similarity=0.359  Sum_probs=20.6

Q ss_pred             CCEEEEECCCCCcHHHHHHHHhC
Q 022663           42 GSRCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        42 Ge~~~liG~NGsGKSTLlk~i~G   64 (294)
                      ..+++|+|+.||||||+.+.|+-
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999974

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=96.60  E-value=0.0014  Score=52.43  Aligned_cols=25  Identities=28%  Similarity=0.347  Sum_probs=22.0

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhCC
Q 022663           41 PGSRCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        41 ~Ge~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      +.-.++|+|+.|+|||||++.+.+.
T Consensus         7 ~~~~i~v~G~~~~GKssl~~~l~~~   31 (178)
T 2lkc_A            7 RPPVVTIMGHVDHGKTTLLDAIRHS   31 (178)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4557899999999999999999874

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=96.60  E-value=0.00093  Score=52.86  Aligned_cols=22  Identities=18%  Similarity=0.468  Sum_probs=19.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .++|+|+.|+|||||++.+.+.
T Consensus         7 ~i~v~G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A            7 KMVVVGNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            4799999999999999999863

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=96.60  E-value=0.0011  Score=54.99  Aligned_cols=24  Identities=29%  Similarity=0.353  Sum_probs=21.0

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhC
Q 022663           41 PGSRCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        41 ~Ge~~~liG~NGsGKSTLlk~i~G   64 (294)
                      ...+++|.|+.||||||+.+.|+-
T Consensus        14 ~~~~I~l~G~~GsGKsT~~~~L~~   37 (203)
T 1ukz_A           14 QVSVIFVLGGPGAGKGTQCEKLVK   37 (203)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            345799999999999999999974

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=96.58  E-value=0.001  Score=52.34  Aligned_cols=22  Identities=32%  Similarity=0.566  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .++|+|+.|+|||||++.+.+.
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~   24 (161)
T 2dyk_A            3 KVVIVGRPNVGKSSLFNRLLKK   24 (161)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4799999999999999999874

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.57  E-value=0.0012  Score=55.03  Aligned_cols=22  Identities=32%  Similarity=0.421  Sum_probs=20.2

Q ss_pred             CEEEEECCCCCcHHHHHHHHhC
Q 022663           43 SRCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        43 e~~~liG~NGsGKSTLlk~i~G   64 (294)
                      -+++|+|+.||||||+.+.|+-
T Consensus        13 ~iIgltG~~GSGKSTva~~L~~   34 (192)
T 2grj_A           13 MVIGVTGKIGTGKSTVCEILKN   34 (192)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999974

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=96.56  E-value=0.0011  Score=54.20  Aligned_cols=23  Identities=22%  Similarity=0.462  Sum_probs=21.0

Q ss_pred             CEEEEECCCCCcHHHHHHHHhCC
Q 022663           43 SRCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        43 e~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      -.++|+|+.|+|||||++.+.|.
T Consensus        24 ~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           24 PEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            46899999999999999999984

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.56  E-value=0.0012  Score=57.41  Aligned_cols=24  Identities=38%  Similarity=0.368  Sum_probs=21.7

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhC
Q 022663           41 PGSRCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        41 ~Ge~~~liG~NGsGKSTLlk~i~G   64 (294)
                      ++.++.|+|++||||||+.+.|+-
T Consensus         3 ~~~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            3 DIMLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHH
Confidence            466899999999999999999975

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.55  E-value=0.00081  Score=54.27  Aligned_cols=23  Identities=43%  Similarity=0.595  Sum_probs=20.6

Q ss_pred             CCEEEEECCCCCcHHHHHHHHhC
Q 022663           42 GSRCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        42 Ge~~~liG~NGsGKSTLlk~i~G   64 (294)
                      .=.++|+|++|+|||||++.+.+
T Consensus        18 ~~~i~v~G~~~~GKssli~~l~~   40 (183)
T 1moz_A           18 ELRILILGLDGAGKTTILYRLQI   40 (183)
T ss_dssp             CEEEEEEEETTSSHHHHHHHTCC
T ss_pred             ccEEEEECCCCCCHHHHHHHHhc
Confidence            34689999999999999999985

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.55  E-value=0.0012  Score=57.01  Aligned_cols=22  Identities=18%  Similarity=0.200  Sum_probs=20.1

Q ss_pred             CEEEEECCCCCcHHHHHHHHhC
Q 022663           43 SRCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        43 e~~~liG~NGsGKSTLlk~i~G   64 (294)
                      -+++|.|+.||||||+.+.|+-
T Consensus        23 ~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           23 FLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999975

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=96.54  E-value=0.0011  Score=53.83  Aligned_cols=22  Identities=32%  Similarity=0.554  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .++|+|+.|+|||||++.+.|.
T Consensus        25 ~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 3pqc_A           25 EVAFVGRSNVGKSSLLNALFNR   46 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            6899999999999999999884

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=96.54  E-value=0.00096  Score=52.39  Aligned_cols=22  Identities=36%  Similarity=0.558  Sum_probs=19.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .++++|+.|+|||||++.+.+.
T Consensus         5 ~i~v~G~~~~GKssl~~~l~~~   26 (166)
T 2ce2_X            5 KLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4899999999999999999863

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=96.52  E-value=0.0011  Score=52.10  Aligned_cols=21  Identities=24%  Similarity=0.537  Sum_probs=19.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 022663           44 RCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G   64 (294)
                      .++|+|+.|+|||||++.+.+
T Consensus         5 ~i~v~G~~~~GKSsli~~l~~   25 (167)
T 1kao_A            5 KVVVLGSGGVGKSALTVQFVT   25 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            489999999999999999875

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=96.51  E-value=0.0012  Score=52.12  Aligned_cols=22  Identities=27%  Similarity=0.513  Sum_probs=19.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .++++|+.|+|||||++.+.+.
T Consensus         6 ~i~v~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            6 KVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4799999999999999999863

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=96.51  E-value=0.0012  Score=52.42  Aligned_cols=22  Identities=27%  Similarity=0.454  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .++|+|+.|+|||||++.+.+.
T Consensus         8 ~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            8 KVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            4899999999999999999863

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=96.51  E-value=0.0012  Score=52.34  Aligned_cols=22  Identities=23%  Similarity=0.511  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .++|+|+.|+|||||++.+.+.
T Consensus         8 ~i~v~G~~~~GKSsli~~l~~~   29 (170)
T 1z0j_A            8 KVCLLGDTGVGKSSIMWRFVED   29 (170)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            4799999999999999999874

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=96.50  E-value=0.0012  Score=52.94  Aligned_cols=22  Identities=27%  Similarity=0.647  Sum_probs=19.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .++|+|+.|||||||++.+.+.
T Consensus        10 ~i~v~G~~~~GKSsli~~l~~~   31 (182)
T 1ky3_A           10 KVIILGDSGVGKTSLMHRYVND   31 (182)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4899999999999999998863

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.49  E-value=0.0011  Score=52.43  Aligned_cols=22  Identities=18%  Similarity=0.468  Sum_probs=19.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .++|+|+.|+|||||++.+.+.
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1ek0_A            5 KLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999863

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=96.49  E-value=0.0013  Score=53.34  Aligned_cols=22  Identities=36%  Similarity=0.613  Sum_probs=20.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .++|+|+.|+|||||++.+.|.
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~   24 (190)
T 2cxx_A            3 TIIFAGRSNVGKSTLIYRLTGK   24 (190)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCc
Confidence            4789999999999999999984

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=96.46  E-value=0.001  Score=52.66  Aligned_cols=22  Identities=36%  Similarity=0.637  Sum_probs=19.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .++|+|+.|+|||||++.+.+.
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1g16_A            5 KILLIGDSGVGKSCLLVRFVED   26 (170)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            4799999999999999999863

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=96.46  E-value=0.0013  Score=51.94  Aligned_cols=21  Identities=24%  Similarity=0.515  Sum_probs=19.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 022663           44 RCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G   64 (294)
                      .++|+|+.|+|||||++.+.+
T Consensus         5 ki~v~G~~~~GKssli~~l~~   25 (167)
T 1c1y_A            5 KLVVLGSGGVGKSALTVQFVQ   25 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            479999999999999999986

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.45  E-value=0.0093  Score=55.32  Aligned_cols=29  Identities=31%  Similarity=0.565  Sum_probs=23.6

Q ss_pred             eeEEEeCCCEEEEECCCCCcHHHHHHHHhCC
Q 022663           35 FNLGISPGSRCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        35 vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      +.+.-++|  +.|.||.|+|||+|.+++++.
T Consensus       177 ~gi~~prG--vLL~GPPGTGKTllAkAiA~e  205 (405)
T 4b4t_J          177 LGIAQPKG--VILYGPPGTGKTLLARAVAHH  205 (405)
T ss_dssp             HTCCCCCC--EEEESCSSSSHHHHHHHHHHH
T ss_pred             CCCCCCCc--eEEeCCCCCCHHHHHHHHHHh
Confidence            33444555  899999999999999999984

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.45  E-value=0.017  Score=53.98  Aligned_cols=26  Identities=42%  Similarity=0.653  Sum_probs=21.9

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhCC
Q 022663           40 SPGSRCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        40 ~~Ge~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .+..=+.|.||.|+|||+|.++|++.
T Consensus       204 ~~prGiLL~GPPGtGKT~lakAiA~~  229 (428)
T 4b4t_K          204 DPPRGVLLYGPPGTGKTMLVKAVANS  229 (428)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHH
Confidence            33344999999999999999999983

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=96.45  E-value=0.0013  Score=52.57  Aligned_cols=22  Identities=27%  Similarity=0.628  Sum_probs=19.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .++|+|+.|+|||||++.+.+.
T Consensus         9 ~i~v~G~~~~GKSsli~~l~~~   30 (177)
T 1wms_A            9 KVILLGDGGVGKSSLMNRYVTN   30 (177)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4799999999999999999863

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=96.45  E-value=0.00078  Score=59.83  Aligned_cols=24  Identities=17%  Similarity=0.307  Sum_probs=18.4

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhC
Q 022663           41 PGSRCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        41 ~Ge~~~liG~NGsGKSTLlk~i~G   64 (294)
                      ++-+++|.||+||||||+.+.|+.
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~   27 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQ   27 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            355899999999999999999975

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.45  E-value=0.0016  Score=55.23  Aligned_cols=21  Identities=38%  Similarity=0.571  Sum_probs=19.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 022663           44 RCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G   64 (294)
                      +++|.|+.||||||+.+.|+-
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~   22 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKD   22 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999999974

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=96.45  E-value=0.0014  Score=54.21  Aligned_cols=22  Identities=41%  Similarity=0.726  Sum_probs=20.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .++|+|++|+|||||++.++|.
T Consensus        25 ki~vvG~~~vGKSsLi~~l~~~   46 (195)
T 3cbq_A           25 KVMLVGESGVGKSTLAGTFGGL   46 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHTCCE
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            5899999999999999999873

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.42  E-value=0.014  Score=54.50  Aligned_cols=26  Identities=42%  Similarity=0.634  Sum_probs=22.0

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhCC
Q 022663           40 SPGSRCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        40 ~~Ge~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      ++..=+.|.||.|+|||+|.++|++.
T Consensus       214 ~~prGvLLyGPPGTGKTlLAkAiA~e  239 (437)
T 4b4t_I          214 KPPKGVILYGAPGTGKTLLAKAVANQ  239 (437)
T ss_dssp             CCCSEEEEESSTTTTHHHHHHHHHHH
T ss_pred             CCCCCCceECCCCchHHHHHHHHHHH
Confidence            33344999999999999999999984

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=96.42  E-value=0.0013  Score=52.75  Aligned_cols=22  Identities=27%  Similarity=0.489  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .++|+|+.|+|||||++.+.+.
T Consensus        11 ~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A           11 KLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4899999999999999999874

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=96.42  E-value=0.0016  Score=58.05  Aligned_cols=22  Identities=41%  Similarity=0.516  Sum_probs=20.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .++|+|++|+|||||++.|.|.
T Consensus         9 ~V~ivG~~nvGKSTLln~l~g~   30 (301)
T 1wf3_A            9 FVAIVGKPNVGKSTLLNNLLGV   30 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6999999999999999999984

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=96.42  E-value=0.0015  Score=56.80  Aligned_cols=22  Identities=41%  Similarity=0.659  Sum_probs=20.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .++|+|..|||||||++.++|.
T Consensus         3 kI~lvG~~n~GKSTL~n~L~g~   24 (256)
T 3iby_A            3 HALLIGNPNCGKTTLFNALTNA   24 (256)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            5899999999999999999995

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.42  E-value=0.0015  Score=57.68  Aligned_cols=22  Identities=32%  Similarity=0.326  Sum_probs=20.2

Q ss_pred             CCEEEEECCCCCcHHHHHHHHh
Q 022663           42 GSRCLLVGANGSGKTTLLKILA   63 (294)
Q Consensus        42 Ge~~~liG~NGsGKSTLlk~i~   63 (294)
                      .-+++|+|+.||||||+.+.|+
T Consensus        75 ~~iI~I~G~~GSGKSTva~~La   96 (281)
T 2f6r_A           75 LYVLGLTGISGSGKSSVAQRLK   96 (281)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHH
Confidence            3479999999999999999998

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=96.40  E-value=0.0017  Score=55.84  Aligned_cols=25  Identities=40%  Similarity=0.547  Sum_probs=22.0

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhC
Q 022663           40 SPGSRCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        40 ~~Ge~~~liG~NGsGKSTLlk~i~G   64 (294)
                      .++-+++|+||.||||||+.+.|+-
T Consensus        27 ~~~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           27 KPDGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3566899999999999999999974

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=96.39  E-value=0.0014  Score=57.29  Aligned_cols=22  Identities=36%  Similarity=0.536  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .++|+|++|+|||||++.|.|.
T Consensus        10 ~I~vvG~~g~GKSTLin~L~~~   31 (274)
T 3t5d_A           10 TLMVVGESGLGKSTLINSLFLT   31 (274)
T ss_dssp             EEEEEECTTSSHHHHHHHHSSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3899999999999999999874

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=96.39  E-value=0.0015  Score=53.19  Aligned_cols=23  Identities=39%  Similarity=0.390  Sum_probs=20.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhCCc
Q 022663           44 RCLLVGANGSGKTTLLKILAGKH   66 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~~   66 (294)
                      .++|+|+.|+|||||++.+.|..
T Consensus        16 ki~vvG~~~~GKssL~~~l~~~~   38 (198)
T 3t1o_A           16 KIVYYGPGLSGKTTNLKWIYSKV   38 (198)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhc
Confidence            47999999999999999999854

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=96.39  E-value=0.0018  Score=51.87  Aligned_cols=22  Identities=32%  Similarity=0.554  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .++|+|+.|+|||||++.+.+-
T Consensus         8 ki~v~G~~~~GKssl~~~l~~~   29 (178)
T 2hxs_A            8 KIVVLGDGASGKTSLTTCFAQE   29 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHGG
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            4899999999999999999873

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=96.38  E-value=0.0015  Score=53.36  Aligned_cols=22  Identities=36%  Similarity=0.691  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .++|+|+.|+|||||++.+++.
T Consensus        27 ki~v~G~~~~GKSsLi~~l~~~   48 (193)
T 2oil_A           27 KVVLIGESGVGKTNLLSRFTRN   48 (193)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            5899999999999999999873

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=96.38  E-value=0.0013  Score=60.55  Aligned_cols=22  Identities=32%  Similarity=0.427  Sum_probs=20.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .++|+|++|+|||||++.|+|.
T Consensus         3 ~v~IVG~pnvGKSTL~n~L~~~   24 (368)
T 2dby_A            3 AVGIVGLPNVGKSTLFNALTRA   24 (368)
T ss_dssp             SEEEECCSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3799999999999999999874

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=96.37  E-value=0.0015  Score=51.78  Aligned_cols=21  Identities=48%  Similarity=0.716  Sum_probs=19.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 022663           44 RCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G   64 (294)
                      .++|+|+.|+|||||++.+.+
T Consensus         9 ~i~v~G~~~~GKssl~~~l~~   29 (171)
T 1upt_A            9 RILILGLDGAGKTTILYRLQV   29 (171)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            589999999999999999975

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=96.37  E-value=0.0016  Score=52.68  Aligned_cols=22  Identities=36%  Similarity=0.585  Sum_probs=19.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .++|+|+.|+|||||++.+.+.
T Consensus         6 ki~v~G~~~~GKSsli~~l~~~   27 (189)
T 4dsu_A            6 KLVVVGADGVGKSALTIQLIQN   27 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4799999999999999999863

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=96.37  E-value=0.0016  Score=51.54  Aligned_cols=21  Identities=24%  Similarity=0.491  Sum_probs=19.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 022663           44 RCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G   64 (294)
                      .++|+|+.|+|||||++.+.+
T Consensus         8 ~i~v~G~~~~GKssli~~l~~   28 (170)
T 1r2q_A            8 KLVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            479999999999999999986

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=96.37  E-value=0.0016  Score=59.74  Aligned_cols=23  Identities=39%  Similarity=0.681  Sum_probs=21.1

Q ss_pred             CCEEEEECCCCCcHHHHHHHHhC
Q 022663           42 GSRCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        42 Ge~~~liG~NGsGKSTLlk~i~G   64 (294)
                      |-.++|+|.+|+|||||++.|+|
T Consensus         2 ~~kI~IVG~pnvGKSTL~n~Lt~   24 (363)
T 1jal_A            2 GFKCGIVGLPNVGKSTLFNALTK   24 (363)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHC
Confidence            45689999999999999999997

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=96.36  E-value=0.0016  Score=53.08  Aligned_cols=22  Identities=23%  Similarity=0.510  Sum_probs=20.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .++|+|+.|+|||||++.+.|.
T Consensus         9 ki~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            9 KTVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4899999999999999999874

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=96.35  E-value=0.0016  Score=52.75  Aligned_cols=21  Identities=33%  Similarity=0.566  Sum_probs=19.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 022663           44 RCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G   64 (294)
                      .++|+|+.|+|||||++.+.+
T Consensus        13 ki~v~G~~~~GKSsli~~l~~   33 (195)
T 3bc1_A           13 KFLALGDSGVGKTSVLYQYTD   33 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            589999999999999999986

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=96.32  E-value=0.0017  Score=51.19  Aligned_cols=21  Identities=48%  Similarity=0.629  Sum_probs=19.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 022663           44 RCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G   64 (294)
                      .++|+|+.|+|||||++.+.+
T Consensus         2 ki~~~G~~~~GKssl~~~l~~   22 (164)
T 1r8s_A            2 RILMVGLDAAGKTTILYKLKL   22 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            378999999999999999976

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=96.32  E-value=0.0022  Score=51.90  Aligned_cols=25  Identities=40%  Similarity=0.658  Sum_probs=21.6

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhCC
Q 022663           41 PGSRCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        41 ~Ge~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      +.=.++|+|+.|+|||||++.+.+-
T Consensus        17 ~~~~i~v~G~~~~GKssl~~~l~~~   41 (186)
T 1ksh_A           17 RELRLLMLGLDNAGKTTILKKFNGE   41 (186)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhcC
Confidence            3346899999999999999999874

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=96.31  E-value=0.0047  Score=62.79  Aligned_cols=24  Identities=42%  Similarity=0.596  Sum_probs=21.5

Q ss_pred             CEEEEECCCCCcHHHHHHHHhCCc
Q 022663           43 SRCLLVGANGSGKTTLLKILAGKH   66 (294)
Q Consensus        43 e~~~liG~NGsGKSTLlk~i~G~~   66 (294)
                      ..+.|.||+|+|||+|.+.|+...
T Consensus       589 ~~vLl~Gp~GtGKT~lA~~la~~~  612 (854)
T 1qvr_A          589 GSFLFLGPTGVGKTELAKTLAATL  612 (854)
T ss_dssp             EEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            478999999999999999999754

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=96.30  E-value=0.0018  Score=52.71  Aligned_cols=22  Identities=36%  Similarity=0.558  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .++++|+.|+|||||++.+++.
T Consensus        23 ki~vvG~~~~GKSsli~~l~~~   44 (190)
T 3con_A           23 KLVVVGAGGVGKSALTIQLIQN   44 (190)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            5899999999999999999863

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=96.30  E-value=0.0018  Score=52.87  Aligned_cols=21  Identities=29%  Similarity=0.382  Sum_probs=18.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 022663           44 RCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G   64 (294)
                      .++|+|++|+|||||++.+++
T Consensus        22 ki~ivG~~~vGKSsL~~~~~~   42 (184)
T 3ihw_A           22 KVGIVGNLSSGKSALVHRYLT   42 (184)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            589999999999999976654

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=96.30  E-value=0.0022  Score=55.80  Aligned_cols=22  Identities=36%  Similarity=0.641  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .++|+|+.|||||||++.++|.
T Consensus         7 kI~lvG~~nvGKTsL~n~l~g~   28 (258)
T 3a1s_A            7 KVALAGCPNVGKTSLFNALTGT   28 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            4899999999999999999984

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=96.29  E-value=0.0018  Score=51.68  Aligned_cols=22  Identities=32%  Similarity=0.653  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .++|+|+.|+|||||++.+.+.
T Consensus        17 ~i~v~G~~~~GKSsli~~l~~~   38 (179)
T 1z0f_A           17 KYIIIGDMGVGKSCLLHQFTEK   38 (179)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4899999999999999999873

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=96.29  E-value=0.0018  Score=52.09  Aligned_cols=22  Identities=27%  Similarity=0.513  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .++|+|+.|+|||||++.+.+.
T Consensus        20 ki~v~G~~~~GKSsli~~l~~~   41 (187)
T 2a9k_A           20 KVIMVGSGGVGKSALTLQFMYD   41 (187)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhhC
Confidence            4899999999999999999863

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=96.29  E-value=0.0039  Score=52.27  Aligned_cols=34  Identities=24%  Similarity=0.261  Sum_probs=28.0

Q ss_pred             CceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhC
Q 022663           30 PLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        30 ~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G   64 (294)
                      ..+...-+.+ .|..++|+||+|||||||...|+.
T Consensus        23 ~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~   56 (205)
T 2qmh_A           23 RSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQ   56 (205)
T ss_dssp             CCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHT
T ss_pred             eeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHH
Confidence            4566666665 678999999999999999998875

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=96.29  E-value=0.002  Score=55.59  Aligned_cols=22  Identities=36%  Similarity=0.572  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .++|+|+.|||||||++.|.|.
T Consensus        24 ~I~lvG~~g~GKStl~n~l~~~   45 (260)
T 2xtp_A           24 RIILVGKTGTGKSAAGNSILRK   45 (260)
T ss_dssp             EEEEEECTTSCHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999984

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.28  E-value=0.0019  Score=51.84  Aligned_cols=22  Identities=41%  Similarity=0.637  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .++|+|+.|+|||||++.+.+.
T Consensus        12 ~i~v~G~~~~GKssli~~l~~~   33 (180)
T 2g6b_A           12 KVMLVGDSGVGKTCLLVRFKDG   33 (180)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            5899999999999999999863

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=96.27  E-value=0.0017  Score=51.88  Aligned_cols=21  Identities=24%  Similarity=0.463  Sum_probs=19.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 022663           44 RCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G   64 (294)
                      .++|+|+.|+|||||++.+.+
T Consensus        16 ~i~v~G~~~~GKssli~~l~~   36 (179)
T 2y8e_A           16 KLVFLGEQSVGKTSLITRFMY   36 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            489999999999999999986

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=96.27  E-value=0.002  Score=54.01  Aligned_cols=21  Identities=33%  Similarity=0.482  Sum_probs=19.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 022663           44 RCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G   64 (294)
                      .++|.|+.||||||+.+.|+-
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999974

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=96.26  E-value=0.0022  Score=52.52  Aligned_cols=22  Identities=27%  Similarity=0.703  Sum_probs=19.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .++|+|+.|+|||||++.+.+.
T Consensus        28 ki~vvG~~~~GKSsLi~~l~~~   49 (192)
T 2il1_A           28 QVIIIGSRGVGKTSLMERFTDD   49 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHCC-
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4899999999999999999874

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=96.26  E-value=0.0023  Score=57.20  Aligned_cols=22  Identities=41%  Similarity=0.564  Sum_probs=20.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .++|+|+.|+|||||++.|.|.
T Consensus        12 ~v~ivG~~nvGKSTLin~l~g~   33 (308)
T 3iev_A           12 YVAIVGKPNVGKSTLLNNLLGT   33 (308)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            7999999999999999999984

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.26  E-value=0.0019  Score=53.92  Aligned_cols=22  Identities=36%  Similarity=0.656  Sum_probs=20.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .++|+|+.|+|||||++.+++.
T Consensus        14 ~i~~~G~~g~GKTsl~~~l~~~   35 (218)
T 1nrj_B           14 SIIIAGPQNSGKTSLLTLLTTD   35 (218)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999874

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=96.26  E-value=0.0013  Score=55.07  Aligned_cols=23  Identities=22%  Similarity=0.504  Sum_probs=21.1

Q ss_pred             CEEEEECCCCCcHHHHHHHHhCC
Q 022663           43 SRCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        43 e~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      -.++|+|+.|+|||||++.|+|.
T Consensus        30 ~~i~v~G~~~~GKSslin~l~~~   52 (223)
T 4dhe_A           30 PEIAFAGRSNAGKSTAINVLCNQ   52 (223)
T ss_dssp             CEEEEEESCHHHHHHHHHHHTTC
T ss_pred             CEEEEEcCCCCCHHHHHHHHhCC
Confidence            46899999999999999999985

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.26  E-value=0.0027  Score=51.03  Aligned_cols=26  Identities=31%  Similarity=0.506  Sum_probs=22.3

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhCC
Q 022663           40 SPGSRCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        40 ~~Ge~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      ..+..+.|.||.|+|||||++.++..
T Consensus        41 ~~~~~~ll~G~~G~GKT~l~~~~~~~   66 (195)
T 1jbk_A           41 RTKNNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             SSSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHH
Confidence            34567899999999999999999864

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=96.25  E-value=0.0031  Score=56.56  Aligned_cols=34  Identities=21%  Similarity=0.259  Sum_probs=29.4

Q ss_pred             CceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhC
Q 022663           30 PLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        30 ~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G   64 (294)
                      ..+++..+.+ .|.-++|+|+||+|||||...+.+
T Consensus       133 ~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~  166 (314)
T 1ko7_A          133 TSLHGVLVDV-YGVGVLITGDSGIGKSETALELIK  166 (314)
T ss_dssp             EEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             eeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence            4677878887 788999999999999999988875

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=96.24  E-value=0.0022  Score=56.23  Aligned_cols=22  Identities=45%  Similarity=0.613  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .++|+|..|||||||++.++|.
T Consensus         5 ~I~lvG~~n~GKSTLin~l~g~   26 (274)
T 3i8s_A            5 TIGLIGNPNSGKTTLFNQLTGS   26 (274)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999985

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.23  E-value=0.0023  Score=53.90  Aligned_cols=24  Identities=33%  Similarity=0.491  Sum_probs=21.2

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhC
Q 022663           41 PGSRCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        41 ~Ge~~~liG~NGsGKSTLlk~i~G   64 (294)
                      +|-.++|+|+.||||||+.+.|+-
T Consensus         4 ~~~~I~l~G~~GsGKsT~a~~La~   27 (217)
T 3be4_A            4 KKHNLILIGAPGSGKGTQCEFIKK   27 (217)
T ss_dssp             GCCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            356789999999999999999975

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=96.23  E-value=0.0022  Score=54.96  Aligned_cols=26  Identities=31%  Similarity=0.501  Sum_probs=20.7

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhCC
Q 022663           40 SPGSRCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        40 ~~Ge~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .+|-++.|.|+.||||||+.+.|+-.
T Consensus        23 ~~g~~I~~eG~~GsGKsT~~~~l~~~   48 (227)
T 3v9p_A           23 ARGKFITFEGIDGAGKTTHLQWFCDR   48 (227)
T ss_dssp             CCCCEEEEECCC---CHHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999999999753

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=96.23  E-value=0.0021  Score=51.57  Aligned_cols=22  Identities=27%  Similarity=0.549  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .++|+|+.|+|||||++.+.+.
T Consensus        14 ki~v~G~~~~GKSsli~~l~~~   35 (181)
T 2efe_B           14 KLVLLGDVGAGKSSLVLRFVKD   35 (181)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            4899999999999999999863

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=96.22  E-value=0.002  Score=52.52  Aligned_cols=24  Identities=33%  Similarity=0.508  Sum_probs=21.2

Q ss_pred             CEEEEECCCCCcHHHHHHHHhCCc
Q 022663           43 SRCLLVGANGSGKTTLLKILAGKH   66 (294)
Q Consensus        43 e~~~liG~NGsGKSTLlk~i~G~~   66 (294)
                      =.++|+|+.|+|||||++.+++..
T Consensus        22 ~ki~v~G~~~~GKSsli~~l~~~~   45 (190)
T 2h57_A           22 VHVLCLGLDNSGKTTIINKLKPSN   45 (190)
T ss_dssp             EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCC
Confidence            368999999999999999999843

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=96.22  E-value=0.0027  Score=51.82  Aligned_cols=23  Identities=26%  Similarity=0.478  Sum_probs=20.7

Q ss_pred             CEEEEECCCCCcHHHHHHHHhCC
Q 022663           43 SRCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        43 e~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      -.++|+|+.|+|||||++.+++.
T Consensus        18 ~ki~v~G~~~~GKSsl~~~l~~~   40 (199)
T 4bas_A           18 LQVVMCGLDNSGKTTIINQVKPA   40 (199)
T ss_dssp             EEEEEECCTTSCHHHHHHHHSCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhcC
Confidence            36899999999999999999884

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=96.21  E-value=0.0025  Score=56.24  Aligned_cols=22  Identities=32%  Similarity=0.471  Sum_probs=19.9

Q ss_pred             CEEEEECCCCCcHHHHHHHHhC
Q 022663           43 SRCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        43 e~~~liG~NGsGKSTLlk~i~G   64 (294)
                      .++.|+|++||||||+.+.|+-
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999974

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=96.20  E-value=0.0019  Score=52.11  Aligned_cols=22  Identities=36%  Similarity=0.697  Sum_probs=19.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .++|+|+.|+|||||++.+.+.
T Consensus        12 ki~v~G~~~~GKSsli~~l~~~   33 (186)
T 2bme_A           12 KFLVIGNAGTGKSCLLHQFIEK   33 (186)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999999863

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=96.20  E-value=0.0028  Score=52.14  Aligned_cols=22  Identities=32%  Similarity=0.534  Sum_probs=20.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .++|+|+.|+|||||++.+.+.
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~   31 (203)
T 1zbd_A           10 KILIIGNSSVGKTSFLFRYADD   31 (203)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4899999999999999999874

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=96.20  E-value=0.0022  Score=52.83  Aligned_cols=22  Identities=32%  Similarity=0.699  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .++|+|+.|+|||||++.+.+.
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~   31 (207)
T 1vg8_A           10 KVIILGDSGVGKTSLMNQYVNK   31 (207)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            5899999999999999999873

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=96.20  E-value=0.0027  Score=59.17  Aligned_cols=27  Identities=22%  Similarity=0.199  Sum_probs=23.5

Q ss_pred             EEeCCCEEEEECCCCCcHHHHHHHHhC
Q 022663           38 GISPGSRCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        38 ~i~~Ge~~~liG~NGsGKSTLlk~i~G   64 (294)
                      .-....++.|+|++||||||+.+.|+.
T Consensus       254 ~~~~~~lIil~G~pGSGKSTla~~L~~  280 (416)
T 3zvl_A          254 LSPNPEVVVAVGFPGAGKSTFIQEHLV  280 (416)
T ss_dssp             CCSSCCEEEEESCTTSSHHHHHHHHTG
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            345678999999999999999999975

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=96.19  E-value=0.002  Score=52.98  Aligned_cols=21  Identities=29%  Similarity=0.529  Sum_probs=19.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 022663           44 RCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G   64 (294)
                      .++|+|+.|+|||||++.+.+
T Consensus        16 ki~v~G~~~~GKSsli~~l~~   36 (206)
T 2bov_A           16 KVIMVGSGGVGKSALTLQFMY   36 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            489999999999999999986

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=96.19  E-value=0.0027  Score=53.58  Aligned_cols=23  Identities=26%  Similarity=0.523  Sum_probs=20.9

Q ss_pred             CEEEEECCCCCcHHHHHHHHhCC
Q 022663           43 SRCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        43 e~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      -.++|+|+.|+|||||++.++|.
T Consensus        30 ~kI~vvG~~~vGKSsLin~l~~~   52 (228)
T 2qu8_A           30 KTIILSGAPNVGKSSFMNIVSRA   52 (228)
T ss_dssp             EEEEEECSTTSSHHHHHHHHTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            36899999999999999999984

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=96.18  E-value=0.0022  Score=52.77  Aligned_cols=21  Identities=52%  Similarity=0.934  Sum_probs=19.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 022663           44 RCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G   64 (294)
                      .++|+|++|+|||||++.++|
T Consensus         8 kv~lvG~~~vGKSsL~~~~~~   28 (192)
T 2cjw_A            8 RVVLIGEQGVGKSTLANIFAG   28 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            489999999999999999986

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=96.18  E-value=0.0022  Score=51.66  Aligned_cols=22  Identities=32%  Similarity=0.501  Sum_probs=19.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .++|+|+.|+|||||++.+.+.
T Consensus        20 ki~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           20 KLVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999999863

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=96.18  E-value=0.002  Score=52.29  Aligned_cols=22  Identities=36%  Similarity=0.656  Sum_probs=19.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .++|+|+.|+|||||++.+.+.
T Consensus         9 ki~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A            9 KIVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4799999999999999999863

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=96.18  E-value=0.0027  Score=53.70  Aligned_cols=27  Identities=33%  Similarity=0.385  Sum_probs=23.2

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhCCc
Q 022663           40 SPGSRCLLVGANGSGKTTLLKILAGKH   66 (294)
Q Consensus        40 ~~Ge~~~liG~NGsGKSTLlk~i~G~~   66 (294)
                      -+|-+++|.|+.||||||+.+.|+-.+
T Consensus         4 m~g~~i~~eG~~gsGKsT~~~~l~~~l   30 (213)
T 4edh_A            4 MTGLFVTLEGPEGAGKSTNRDYLAERL   30 (213)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHHHHH
Confidence            368899999999999999999997543

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=96.18  E-value=0.0022  Score=52.15  Aligned_cols=22  Identities=36%  Similarity=0.546  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .++|+|+.|+|||||++.+++.
T Consensus        24 ki~vvG~~~~GKSsli~~l~~~   45 (189)
T 2gf9_A           24 KLLLIGNSSVGKTSFLFRYADD   45 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999999863

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=96.18  E-value=0.0022  Score=52.19  Aligned_cols=22  Identities=41%  Similarity=0.673  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .++|+|+.|+|||||++.+.+.
T Consensus        18 ki~v~G~~~~GKSsli~~l~~~   39 (196)
T 3tkl_A           18 KLLLIGDSGVGKSCLLLRFADD   39 (196)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            4899999999999999999873

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=96.16  E-value=0.0028  Score=59.97  Aligned_cols=34  Identities=26%  Similarity=0.319  Sum_probs=28.8

Q ss_pred             ceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCC
Q 022663           31 LFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        31 iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      +++.+ +.+-+|+.++|+|++|+|||||++.|+..
T Consensus       141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~  174 (473)
T 1sky_E          141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHN  174 (473)
T ss_dssp             HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHH
T ss_pred             HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhh
Confidence            44444 67789999999999999999999999864

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=96.16  E-value=0.0026  Score=57.69  Aligned_cols=22  Identities=36%  Similarity=0.371  Sum_probs=20.1

Q ss_pred             CEEEEECCCCCcHHHHHHHHhC
Q 022663           43 SRCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        43 e~~~liG~NGsGKSTLlk~i~G   64 (294)
                      .+++|+||+|||||||.+.|+.
T Consensus         8 ~lI~I~GptgSGKTtla~~La~   29 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAK   29 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHH
Confidence            3799999999999999999985

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.16  E-value=0.0027  Score=51.53  Aligned_cols=22  Identities=32%  Similarity=0.573  Sum_probs=20.1

Q ss_pred             CEEEEECCCCCcHHHHHHHHhC
Q 022663           43 SRCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        43 e~~~liG~NGsGKSTLlk~i~G   64 (294)
                      =.++|+|+.|+|||||++.+.+
T Consensus        17 ~~i~v~G~~~~GKssl~~~l~~   38 (187)
T 1zj6_A           17 HKVIIVGLDNAGKTTILYQFSM   38 (187)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHhc
Confidence            3689999999999999999986

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=96.15  E-value=0.0029  Score=54.45  Aligned_cols=26  Identities=19%  Similarity=0.404  Sum_probs=23.4

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCc
Q 022663           41 PGSRCLLVGANGSGKTTLLKILAGKH   66 (294)
Q Consensus        41 ~Ge~~~liG~NGsGKSTLlk~i~G~~   66 (294)
                      +|.+++|.|++||||||+++.|+..+
T Consensus        26 ~~~~i~~eG~~GsGKsT~~~~l~~~l   51 (236)
T 3lv8_A           26 NAKFIVIEGLEGAGKSTAIQVVVETL   51 (236)
T ss_dssp             CCCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            68999999999999999999997644

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=96.15  E-value=0.0027  Score=52.37  Aligned_cols=22  Identities=32%  Similarity=0.682  Sum_probs=19.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .++|+|+.|+|||||++.+.+.
T Consensus        27 ki~v~G~~~~GKSsLi~~l~~~   48 (200)
T 2o52_A           27 KFLVIGSAGTGKSCLLHQFIEN   48 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHC-
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            5899999999999999999873

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.15  E-value=0.002  Score=52.66  Aligned_cols=21  Identities=33%  Similarity=0.612  Sum_probs=19.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 022663           44 RCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G   64 (294)
                      .++|+|+.|+|||||++.+.+
T Consensus        10 ki~vvG~~~~GKSsli~~l~~   30 (199)
T 2gf0_A           10 RVVVFGAGGVGKSSLVLRFVK   30 (199)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHc
Confidence            589999999999999999986

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.14  E-value=0.0074  Score=56.90  Aligned_cols=27  Identities=37%  Similarity=0.581  Sum_probs=22.6

Q ss_pred             EeCCCEEEEECCCCCcHHHHHHHHhCC
Q 022663           39 ISPGSRCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        39 i~~Ge~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      +.+-.=+.|.||.|+|||+|.++|++.
T Consensus       240 i~pprGILLyGPPGTGKTlLAkAiA~e  266 (467)
T 4b4t_H          240 IDPPKGILLYGPPGTGKTLCARAVANR  266 (467)
T ss_dssp             CCCCSEEEECSCTTSSHHHHHHHHHHH
T ss_pred             CCCCCceEeeCCCCCcHHHHHHHHHhc
Confidence            344445999999999999999999984

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=96.14  E-value=0.0022  Score=52.47  Aligned_cols=22  Identities=23%  Similarity=0.504  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .++|+|+.|+|||||++.+.+.
T Consensus        25 ki~vvG~~~~GKSsli~~l~~~   46 (192)
T 2fg5_A           25 KVCLLGDTGVGKSSIVCRFVQD   46 (192)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            4899999999999999999863

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.12  E-value=0.0035  Score=53.32  Aligned_cols=24  Identities=42%  Similarity=0.591  Sum_probs=21.6

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhC
Q 022663           41 PGSRCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        41 ~Ge~~~liG~NGsGKSTLlk~i~G   64 (294)
                      .+-.+.|+|+.||||||+.+.|+-
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La~   38 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLAK   38 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999999975

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=96.12  E-value=0.0025  Score=51.27  Aligned_cols=21  Identities=38%  Similarity=0.680  Sum_probs=19.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 022663           44 RCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G   64 (294)
                      .++|+|+.|+|||||++.+.+
T Consensus         7 ~i~~~G~~~~GKssl~~~l~~   27 (186)
T 1mh1_A            7 KCVVVGDGAVGKTCLLISYTT   27 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            489999999999999999985

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=96.11  E-value=0.003  Score=52.96  Aligned_cols=23  Identities=30%  Similarity=0.390  Sum_probs=20.9

Q ss_pred             CCEEEEECCCCCcHHHHHHHHhC
Q 022663           42 GSRCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        42 Ge~~~liG~NGsGKSTLlk~i~G   64 (294)
                      +-+++|+|+.||||||+.+.|+.
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~   25 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVAS   25 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999986

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=96.10  E-value=0.0023  Score=53.54  Aligned_cols=23  Identities=35%  Similarity=0.453  Sum_probs=20.6

Q ss_pred             CEEEEECCCCCcHHHHHHHHhCC
Q 022663           43 SRCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        43 e~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      -.++|+|+.|||||||++.+++.
T Consensus        31 ~~i~i~G~~g~GKTTl~~~l~~~   53 (221)
T 2wsm_A           31 VAVNIMGAIGSGKTLLIERTIER   53 (221)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Confidence            47999999999999999999863

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=96.09  E-value=0.0026  Score=51.46  Aligned_cols=22  Identities=32%  Similarity=0.588  Sum_probs=20.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .++|+|+.|+|||||++.+.+-
T Consensus        23 ~i~v~G~~~~GKSsli~~l~~~   44 (181)
T 2h17_A           23 KVIIVGLDNAGKTTILYQFSMN   44 (181)
T ss_dssp             EEEEEEETTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999873

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=96.09  E-value=0.0024  Score=52.70  Aligned_cols=23  Identities=22%  Similarity=0.380  Sum_probs=20.5

Q ss_pred             CEEEEECCCCCcHHHHHHHHhCC
Q 022663           43 SRCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        43 e~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      =.++|+|+.|+|||||++.+.+.
T Consensus        25 ~ki~vvG~~~~GKSsli~~l~~~   47 (201)
T 3oes_A           25 RKVVILGYRCVGKTSLAHQFVEG   47 (201)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            36899999999999999999873

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=96.08  E-value=0.0027  Score=51.65  Aligned_cols=21  Identities=24%  Similarity=0.460  Sum_probs=19.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 022663           44 RCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G   64 (294)
                      .++|+|+.|+|||||++.+.+
T Consensus        22 ki~v~G~~~~GKSsli~~l~~   42 (189)
T 1z06_A           22 KIIVIGDSNVGKTCLTYRFCA   42 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            489999999999999999986

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=96.08  E-value=0.0027  Score=51.83  Aligned_cols=22  Identities=32%  Similarity=0.667  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .++|+|+.|+|||||++.+.+.
T Consensus        23 ki~v~G~~~~GKSsli~~l~~~   44 (191)
T 2a5j_A           23 KYIIIGDTGVGKSCLLLQFTDK   44 (191)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            4899999999999999999863

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=96.08  E-value=0.0029  Score=56.15  Aligned_cols=23  Identities=30%  Similarity=0.696  Sum_probs=21.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhCCc
Q 022663           44 RCLLVGANGSGKTTLLKILAGKH   66 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~~   66 (294)
                      .++|+|+.|||||||++.|+|..
T Consensus        26 ~I~vvG~~~~GKSTlln~l~g~~   48 (315)
T 1jwy_B           26 QIVVVGSQSSGKSSVLENIVGRD   48 (315)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTSC
T ss_pred             eEEEEcCCCCCHHHHHHHHHCCC
Confidence            69999999999999999999953

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=96.08  E-value=0.0035  Score=52.15  Aligned_cols=22  Identities=36%  Similarity=0.552  Sum_probs=20.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .++|+|+.|+|||||++.+.+.
T Consensus        27 ki~vvG~~~~GKSsLi~~l~~~   48 (217)
T 2f7s_A           27 KLLALGDSGVGKTTFLYRYTDN   48 (217)
T ss_dssp             EEEEESCTTSSHHHHHHHHHCS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            4899999999999999999874

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.07  E-value=0.0024  Score=52.11  Aligned_cols=21  Identities=33%  Similarity=0.545  Sum_probs=19.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 022663           44 RCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G   64 (294)
                      .++|+|+.|+|||||++.+.+
T Consensus        25 ki~v~G~~~~GKSsli~~l~~   45 (191)
T 3dz8_A           25 KLLIIGNSSVGKTSFLFRYAD   45 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHhc
Confidence            589999999999999999987

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=96.06  E-value=0.0036  Score=53.02  Aligned_cols=26  Identities=23%  Similarity=0.360  Sum_probs=23.1

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCc
Q 022663           41 PGSRCLLVGANGSGKTTLLKILAGKH   66 (294)
Q Consensus        41 ~Ge~~~liG~NGsGKSTLlk~i~G~~   66 (294)
                      +|.++.+-|+.||||||+++.|+-.+
T Consensus         2 ~g~~i~~eG~~gsGKsT~~~~l~~~l   27 (213)
T 4tmk_A            2 RSKYIVIEGLEGAGKTTARNVVVETL   27 (213)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            48899999999999999999997643

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=96.05  E-value=0.0032  Score=51.69  Aligned_cols=23  Identities=39%  Similarity=0.586  Sum_probs=20.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhCCc
Q 022663           44 RCLLVGANGSGKTTLLKILAGKH   66 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~~   66 (294)
                      .++|+|+.|+|||||++.+.|..
T Consensus        22 ki~~vG~~~vGKTsLi~~l~~~~   44 (196)
T 3llu_A           22 RILLMGLRRSGKSSIQKVVFHKM   44 (196)
T ss_dssp             EEEEEESTTSSHHHHHHHHHSCC
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC
Confidence            58999999999999999998843

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=96.05  E-value=0.0028  Score=51.78  Aligned_cols=22  Identities=32%  Similarity=0.495  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .++|+|+.|+|||||++.+++-
T Consensus        25 ki~~vG~~~~GKSsl~~~l~~~   46 (194)
T 3reg_A           25 KIVVVGDGAVGKTCLLLAFSKG   46 (194)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            5899999999999999999873

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.05  E-value=0.0025  Score=52.97  Aligned_cols=21  Identities=33%  Similarity=0.661  Sum_probs=19.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 022663           44 RCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G   64 (294)
                      .++|+|+.|+|||||++.+.+
T Consensus        28 ki~lvG~~~vGKSsLi~~l~~   48 (201)
T 2ew1_A           28 KIVLIGNAGVGKTCLVRRFTQ   48 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHh
Confidence            589999999999999998876

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=96.05  E-value=0.0037  Score=51.30  Aligned_cols=23  Identities=35%  Similarity=0.653  Sum_probs=20.1

Q ss_pred             CEEEEECCCCCcHHHHHHHHhCC
Q 022663           43 SRCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        43 e~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      =.++|+|+.|+|||||++.+.+-
T Consensus        21 ~ki~~~G~~~~GKssl~~~l~~~   43 (201)
T 2q3h_A           21 VKCVLVGDGAVGKTSLVVSYTTN   43 (201)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHC-
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            35899999999999999999873

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=96.03  E-value=0.003  Score=50.72  Aligned_cols=22  Identities=36%  Similarity=0.598  Sum_probs=19.9

Q ss_pred             CEEEEECCCCCcHHHHHHHHhC
Q 022663           43 SRCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        43 e~~~liG~NGsGKSTLlk~i~G   64 (294)
                      =.++|+|+.|+|||||++.+.+
T Consensus         9 ~ki~v~G~~~~GKssl~~~~~~   30 (182)
T 3bwd_D            9 IKCVTVGDGAVGKTCLLISYTS   30 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHhc
Confidence            3589999999999999999986

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=96.02  E-value=0.0034  Score=52.40  Aligned_cols=22  Identities=45%  Similarity=0.791  Sum_probs=19.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .++|+|+.|+|||||++.+.+-
T Consensus        36 ki~vvG~~~vGKSsli~~l~~~   57 (214)
T 2j1l_A           36 KVVLVGDGGCGKTSLLMVFADG   57 (214)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC-
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            5899999999999999999873

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=96.02  E-value=0.003  Score=51.50  Aligned_cols=21  Identities=43%  Similarity=0.594  Sum_probs=19.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 022663           44 RCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G   64 (294)
                      .++|+|+.|+|||||++.+.+
T Consensus        24 ki~v~G~~~~GKSsli~~l~~   44 (188)
T 1zd9_A           24 ELTLVGLQYSGKTTFVNVIAS   44 (188)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            589999999999999999986

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=96.02  E-value=0.0034  Score=50.49  Aligned_cols=21  Identities=19%  Similarity=0.349  Sum_probs=19.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 022663           44 RCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G   64 (294)
                      .++|+|+.|+|||||++.+.+
T Consensus         8 ki~~~G~~~~GKSsli~~l~~   28 (181)
T 3t5g_A            8 KIAILGYRSVGKSSLTIQFVE   28 (181)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHc
Confidence            589999999999999999984

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.00  E-value=0.0031  Score=51.66  Aligned_cols=22  Identities=27%  Similarity=0.466  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .++|+|+.|+|||||++.+++.
T Consensus        30 ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           30 KLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999999863

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=96.00  E-value=0.0031  Score=51.22  Aligned_cols=22  Identities=32%  Similarity=0.668  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .++|+|+.|+|||||++.+.+.
T Consensus        17 ~i~v~G~~~~GKssli~~l~~~   38 (195)
T 1x3s_A           17 KILIIGESGVGKSSLLLRFTDD   38 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999999863

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.00  E-value=0.0033  Score=50.48  Aligned_cols=27  Identities=33%  Similarity=0.416  Sum_probs=22.5

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhCCc
Q 022663           40 SPGSRCLLVGANGSGKTTLLKILAGKH   66 (294)
Q Consensus        40 ~~Ge~~~liG~NGsGKSTLlk~i~G~~   66 (294)
                      ..+..+.|.||.|+|||||++.++...
T Consensus        41 ~~~~~vll~G~~G~GKT~la~~~~~~~   67 (187)
T 2p65_A           41 RTKNNPILLGDPGVGKTAIVEGLAIKI   67 (187)
T ss_dssp             SSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence            345678999999999999999998643

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=95.98  E-value=0.0031  Score=51.84  Aligned_cols=24  Identities=25%  Similarity=0.429  Sum_probs=20.9

Q ss_pred             CCEEEEECCCCCcHHHHHHHHhCC
Q 022663           42 GSRCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        42 Ge~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      -=.++|+|+.|+|||||++.+.+.
T Consensus        28 ~~ki~v~G~~~~GKSsli~~l~~~   51 (199)
T 2p5s_A           28 AYKIVLAGDAAVGKSSFLMRLCKN   51 (199)
T ss_dssp             CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred             CeEEEEECcCCCCHHHHHHHHHhC
Confidence            346899999999999999999863

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=95.98  E-value=0.0024  Score=51.18  Aligned_cols=21  Identities=29%  Similarity=0.431  Sum_probs=19.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 022663           44 RCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G   64 (294)
                      .++|+|+.|+|||||++.+++
T Consensus         9 ki~~vG~~~vGKTsli~~l~~   29 (178)
T 2iwr_A            9 RLGVLGDARSGKSSLIHRFLT   29 (178)
T ss_dssp             EEEEECCGGGCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            489999999999999999986

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=95.97  E-value=0.0043  Score=51.68  Aligned_cols=44  Identities=25%  Similarity=0.282  Sum_probs=31.3

Q ss_pred             cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhH
Q 022663          167 HPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDG  213 (294)
Q Consensus       167 ~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~  213 (294)
                      .+|.+|++||.-. +|......+.+.+.+.  ..+..+|++|++...
T Consensus       125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~--~~~~~~i~~t~~~~~  168 (250)
T 1njg_A          125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEP--PEHVKFLLATTDPQK  168 (250)
T ss_dssp             SSSEEEEEETGGG-SCHHHHHHHHHHHHSC--CTTEEEEEEESCGGG
T ss_pred             CCceEEEEECccc-ccHHHHHHHHHHHhcC--CCceEEEEEeCChHh
Confidence            4678999999755 7887777777666432  235678888887653

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=95.96  E-value=0.0036  Score=51.31  Aligned_cols=23  Identities=43%  Similarity=0.540  Sum_probs=20.5

Q ss_pred             CCEEEEECCCCCcHHHHHHHHhC
Q 022663           42 GSRCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        42 Ge~~~liG~NGsGKSTLlk~i~G   64 (294)
                      .=.++|+|+.|+|||||++.+.+
T Consensus        29 ~~ki~v~G~~~vGKSsLi~~l~~   51 (192)
T 2b6h_A           29 QMRILMVGLDAAGKTTILYKLKL   51 (192)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHCS
T ss_pred             ccEEEEECCCCCCHHHHHHHHHh
Confidence            34689999999999999999976

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.96  E-value=0.0032  Score=52.03  Aligned_cols=23  Identities=35%  Similarity=0.589  Sum_probs=20.4

Q ss_pred             CEEEEECCCCCcHHHHHHHHhCC
Q 022663           43 SRCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        43 e~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      =.++|+|+.|+|||||++.+.+.
T Consensus        21 ~~i~v~G~~~~GKSsli~~l~~~   43 (213)
T 3cph_A           21 MKILLIGDSGVGKSCLLVRFVED   43 (213)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            36899999999999999999863

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=95.96  E-value=0.0029  Score=52.22  Aligned_cols=22  Identities=36%  Similarity=0.653  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .++|+|+.|+|||||++.+.+.
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~   31 (206)
T 2bcg_Y           10 KLLLIGNSGVGKSCLLLRFSDD   31 (206)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999863

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=95.96  E-value=0.0042  Score=52.72  Aligned_cols=27  Identities=37%  Similarity=0.426  Sum_probs=23.8

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhCCc
Q 022663           40 SPGSRCLLVGANGSGKTTLLKILAGKH   66 (294)
Q Consensus        40 ~~Ge~~~liG~NGsGKSTLlk~i~G~~   66 (294)
                      .+|.++.+-|+.||||||+.+.|+-.+
T Consensus         3 ~~g~~i~~eG~~g~GKst~~~~l~~~l   29 (216)
T 3tmk_A            3 GRGKLILIEGLDRTGKTTQCNILYKKL   29 (216)
T ss_dssp             CCCCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            368999999999999999999998643

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=95.96  E-value=0.0039  Score=55.95  Aligned_cols=23  Identities=30%  Similarity=0.351  Sum_probs=20.6

Q ss_pred             CCEEEEECCCCCcHHHHHHHHhC
Q 022663           42 GSRCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        42 Ge~~~liG~NGsGKSTLlk~i~G   64 (294)
                      +.+++|+||+|||||||...|+-
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~   25 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAK   25 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CcEEEEECCCcCCHHHHHHHHHH
Confidence            45789999999999999999975

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=95.96  E-value=0.0038  Score=56.23  Aligned_cols=22  Identities=36%  Similarity=0.527  Sum_probs=20.2

Q ss_pred             CEEEEECCCCCcHHHHHHHHhC
Q 022663           43 SRCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        43 e~~~liG~NGsGKSTLlk~i~G   64 (294)
                      .+++|+||+|||||||.+.|+.
T Consensus         6 ~~i~i~GptGsGKTtla~~La~   27 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALAD   27 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3789999999999999999986

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=95.95  E-value=0.0036  Score=54.64  Aligned_cols=24  Identities=42%  Similarity=0.775  Sum_probs=21.9

Q ss_pred             CEEEEECCCCCcHHHHHHHHhCCc
Q 022663           43 SRCLLVGANGSGKTTLLKILAGKH   66 (294)
Q Consensus        43 e~~~liG~NGsGKSTLlk~i~G~~   66 (294)
                      -.++++|.+|+|||||++.|.|..
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~  123 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKR  123 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTC
T ss_pred             hheEEeCCCCCCHHHHHHHHhccc
Confidence            489999999999999999999854

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=95.95  E-value=0.0044  Score=52.20  Aligned_cols=22  Identities=50%  Similarity=0.866  Sum_probs=20.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .++|+|++|+|||||++.++|.
T Consensus        39 kVvlvG~~~vGKSSLl~r~~~~   60 (211)
T 2g3y_A           39 RVVLIGEQGVGKSTLANIFAGV   60 (211)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999999873

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=95.94  E-value=0.0038  Score=54.18  Aligned_cols=22  Identities=32%  Similarity=0.650  Sum_probs=20.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .++|+|+.|+|||||++.|.|.
T Consensus        38 ~I~lvG~~g~GKSSLin~l~~~   59 (262)
T 3def_A           38 TVLVLGKGGVGKSSTVNSLIGE   59 (262)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999984

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=95.93  E-value=0.0026  Score=51.31  Aligned_cols=22  Identities=36%  Similarity=0.603  Sum_probs=9.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .++|+|+.|+|||||++.+.+.
T Consensus        10 ki~v~G~~~~GKssl~~~l~~~   31 (183)
T 2fu5_C           10 KLLLIGDSGVGKTCVLFRFSED   31 (183)
T ss_dssp             EEEEECCCCC------------
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4899999999999999999863

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=95.92  E-value=0.0031  Score=52.55  Aligned_cols=22  Identities=36%  Similarity=0.656  Sum_probs=20.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .++|+|+.|+|||||++.+++.
T Consensus        30 ki~vvG~~~vGKSsLi~~l~~~   51 (205)
T 1gwn_A           30 KIVVVGDSQCGKTALLHVFAKD   51 (205)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999874

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=95.92  E-value=0.0043  Score=52.93  Aligned_cols=27  Identities=33%  Similarity=0.313  Sum_probs=23.8

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhCCc
Q 022663           40 SPGSRCLLVGANGSGKTTLLKILAGKH   66 (294)
Q Consensus        40 ~~Ge~~~liG~NGsGKSTLlk~i~G~~   66 (294)
                      .+|-+++|.|+.||||||+.+.|+-.+
T Consensus        19 ~~~~~i~~~G~~g~GKst~~~~l~~~l   45 (223)
T 3ld9_A           19 PGSMFITFEGIDGSGKTTQSHLLAEYL   45 (223)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            468899999999999999999997643

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=95.92  E-value=0.0041  Score=56.37  Aligned_cols=26  Identities=35%  Similarity=0.443  Sum_probs=22.9

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCc
Q 022663           41 PGSRCLLVGANGSGKTTLLKILAGKH   66 (294)
Q Consensus        41 ~Ge~~~liG~NGsGKSTLlk~i~G~~   66 (294)
                      ++.+++|+||.|||||||...|+-.+
T Consensus        39 ~~~lIvI~GPTgsGKTtLa~~LA~~l   64 (339)
T 3a8t_A           39 KEKLLVLMGATGTGKSRLSIDLAAHF   64 (339)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHC
Confidence            45689999999999999999999743

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=95.92  E-value=0.0036  Score=51.08  Aligned_cols=21  Identities=24%  Similarity=0.425  Sum_probs=19.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 022663           44 RCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G   64 (294)
                      .++|+|+.|+|||||++.+.+
T Consensus        23 ki~vvG~~~vGKTsLi~~l~~   43 (187)
T 3c5c_A           23 NLAILGRRGAGKSALTVKFLT   43 (187)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHh
Confidence            589999999999999988876

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.92  E-value=0.0017  Score=58.30  Aligned_cols=52  Identities=15%  Similarity=0.270  Sum_probs=35.3

Q ss_pred             CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhH-HHhhhceEE
Q 022663          168 PFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDG-LETWATHLA  222 (294)
Q Consensus       168 ~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~-~~~~~d~v~  222 (294)
                      ++.+|++|| ...|++.....+.+.+.+..  ....+|+++++... ...+.+|+.
T Consensus       133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~--~~~~~il~~~~~~~l~~~l~sR~~  185 (353)
T 1sxj_D          133 PYKIIILDE-ADSMTADAQSALRRTMETYS--GVTRFCLICNYVTRIIDPLASQCS  185 (353)
T ss_dssp             SCEEEEETT-GGGSCHHHHHHHHHHHHHTT--TTEEEEEEESCGGGSCHHHHHHSE
T ss_pred             CceEEEEEC-CCccCHHHHHHHHHHHHhcC--CCceEEEEeCchhhCcchhhccCc
Confidence            667999999 78899988888888876642  23456777766542 333444543

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=95.91  E-value=0.0039  Score=53.29  Aligned_cols=23  Identities=30%  Similarity=0.440  Sum_probs=21.2

Q ss_pred             CCEEEEECCCCCcHHHHHHHHhC
Q 022663           42 GSRCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        42 Ge~~~liG~NGsGKSTLlk~i~G   64 (294)
                      |-+++|.|+.||||||+.+.|+-
T Consensus         2 ~~~i~~~G~~g~GKtt~~~~l~~   24 (241)
T 2ocp_A            2 PRRLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Confidence            56899999999999999999985

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=95.91  E-value=0.0039  Score=54.36  Aligned_cols=22  Identities=27%  Similarity=0.613  Sum_probs=20.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .++++|+.|+|||||++.|+|.
T Consensus        41 ~I~vvG~~g~GKSSLin~l~~~   62 (270)
T 1h65_A           41 TILVMGKGGVGKSSTVNSIIGE   62 (270)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999984

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.91  E-value=0.0032  Score=52.18  Aligned_cols=22  Identities=32%  Similarity=0.588  Sum_probs=20.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .++|+|+.|+|||||++.+.+-
T Consensus        27 ki~vvG~~~~GKSsli~~l~~~   48 (207)
T 2fv8_A           27 KLVVVGDGACGKTCLLIVFSKD   48 (207)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            6899999999999999999873

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=95.88  E-value=0.0037  Score=54.85  Aligned_cols=23  Identities=26%  Similarity=0.616  Sum_probs=21.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhCCc
Q 022663           44 RCLLVGANGSGKTTLLKILAGKH   66 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~~   66 (294)
                      .++|+|..|+|||||++.|+|..
T Consensus        28 ~i~vvG~~~~GKSSLln~l~g~~   50 (299)
T 2aka_B           28 QIAVVGGQSAGKSSVLENFVGRD   50 (299)
T ss_dssp             EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred             eEEEEeCCCCCHHHHHHHHHCCC
Confidence            69999999999999999999853

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=95.88  E-value=0.0036  Score=51.95  Aligned_cols=22  Identities=41%  Similarity=0.428  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .++|+|+.|+|||||++.+++.
T Consensus         9 ki~vvG~~~~GKTsli~~l~~~   30 (214)
T 2fh5_B            9 AVLFVGLCDSGKTLLFVRLLTG   30 (214)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999863

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=95.87  E-value=0.0036  Score=53.17  Aligned_cols=29  Identities=24%  Similarity=0.360  Sum_probs=24.3

Q ss_pred             eEEEeCCCEEEEECCCCCcHHHHHHHHhC
Q 022663           36 NLGISPGSRCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        36 sl~i~~Ge~~~liG~NGsGKSTLlk~i~G   64 (294)
                      +-.+.+..++.|+||.||||||..+.|+-
T Consensus        23 ~~~~~k~kiI~llGpPGsGKgTqa~~L~~   51 (217)
T 3umf_A           23 DQKLAKAKVIFVLGGPGSGKGTQCEKLVQ   51 (217)
T ss_dssp             -CCTTSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred             chhccCCcEEEEECCCCCCHHHHHHHHHH
Confidence            34556778999999999999999999984

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=95.84  E-value=0.0035  Score=59.05  Aligned_cols=21  Identities=33%  Similarity=0.577  Sum_probs=20.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 022663           44 RCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G   64 (294)
                      .++|+|++|+|||||++.|+|
T Consensus        25 ~V~lvG~~nvGKSTL~n~l~~   45 (456)
T 4dcu_A           25 VVAIVGRPNVGKSTIFNRIAG   45 (456)
T ss_dssp             EEEEECSSSSSHHHHHHHHEE
T ss_pred             EEEEECCCCCcHHHHHHHHhC
Confidence            799999999999999999987

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=95.79  E-value=0.0038  Score=51.49  Aligned_cols=22  Identities=32%  Similarity=0.603  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .++|+|+.|+|||||++.+++-
T Consensus        27 ki~vvG~~~~GKSsli~~l~~~   48 (201)
T 2gco_A           27 KLVIVGDGACGKTCLLIVFSKD   48 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4899999999999999999873

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=95.79  E-value=0.0023  Score=53.32  Aligned_cols=22  Identities=32%  Similarity=0.533  Sum_probs=19.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .++|+|+.|+|||||++.++|.
T Consensus        13 ki~vvG~~~~GKSsli~~l~~~   34 (218)
T 4djt_A           13 KICLIGDGGVGKTTYINRVLDG   34 (218)
T ss_dssp             EEEEECCTTSSHHHHHCBCTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999863

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=95.79  E-value=0.0013  Score=57.06  Aligned_cols=28  Identities=50%  Similarity=0.741  Sum_probs=22.8

Q ss_pred             eEEEeCCCEEEEECCCCCcHHHHHHHHhCC
Q 022663           36 NLGISPGSRCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        36 sl~i~~Ge~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .+..+.|  +.|.||+|+|||||++.|+..
T Consensus        40 ~~~~~~~--vll~G~~GtGKT~la~~la~~   67 (268)
T 2r62_A           40 GAKIPKG--VLLVGPPGTGKTLLAKAVAGE   67 (268)
T ss_dssp             SCCCCSC--CCCBCSSCSSHHHHHHHHHHH
T ss_pred             CCCCCce--EEEECCCCCcHHHHHHHHHHH
Confidence            3444555  789999999999999999873

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=95.73  E-value=0.0043  Score=50.60  Aligned_cols=22  Identities=41%  Similarity=0.717  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .++|+|+.|+|||||++.+.+-
T Consensus        20 ki~v~G~~~~GKssli~~l~~~   41 (194)
T 2atx_A           20 KCVVVGDGAVGKTCLLMSYAND   41 (194)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999863

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=95.72  E-value=0.0033  Score=54.53  Aligned_cols=27  Identities=22%  Similarity=0.250  Sum_probs=22.9

Q ss_pred             EeCCCEEEEECCCCCcHHHHHHHHhCC
Q 022663           39 ISPGSRCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        39 i~~Ge~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      ..++-+++|.|+.||||||+.+.|+-.
T Consensus        21 ~~~~~~I~ieG~~GsGKST~~~~L~~~   47 (263)
T 1p5z_B           21 GTRIKKISIEGNIAAGKSTFVNILKQL   47 (263)
T ss_dssp             --CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred             ccCceEEEEECCCCCCHHHHHHHHHHh
Confidence            357789999999999999999999863

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=95.72  E-value=0.0051  Score=51.54  Aligned_cols=22  Identities=41%  Similarity=0.492  Sum_probs=19.9

Q ss_pred             CEEEEECCCCCcHHHHHHHHhC
Q 022663           43 SRCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        43 e~~~liG~NGsGKSTLlk~i~G   64 (294)
                      -.++|+|+.|+|||||++-+++
T Consensus        39 ~~i~ivG~~gvGKTtl~~~l~~   60 (226)
T 2hf9_A           39 VAFDFMGAIGSGKTLLIEKLID   60 (226)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Confidence            4789999999999999998876

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=95.70  E-value=0.0038  Score=50.66  Aligned_cols=22  Identities=36%  Similarity=0.539  Sum_probs=19.9

Q ss_pred             CEEEEECCCCCcHHHHHHHHhC
Q 022663           43 SRCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        43 e~~~liG~NGsGKSTLlk~i~G   64 (294)
                      =.++|+|+.|+|||||++.+.+
T Consensus        23 ~~i~v~G~~~~GKssli~~l~~   44 (189)
T 2x77_A           23 IRVLMLGLDNAGKTSILYRLHL   44 (189)
T ss_dssp             EEEEEEEETTSSHHHHHHHTCC
T ss_pred             eEEEEECCCCCCHHHHHHHHHc
Confidence            3589999999999999999975

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=95.63  E-value=0.0063  Score=54.49  Aligned_cols=23  Identities=35%  Similarity=0.403  Sum_probs=20.5

Q ss_pred             CCEEEEECCCCCcHHHHHHHHhC
Q 022663           42 GSRCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        42 Ge~~~liG~NGsGKSTLlk~i~G   64 (294)
                      ..+++|+||+|||||||...|+-
T Consensus        10 ~~~i~i~GptgsGKt~la~~La~   32 (316)
T 3foz_A           10 PKAIFLMGPTASGKTALAIELRK   32 (316)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CcEEEEECCCccCHHHHHHHHHH
Confidence            34789999999999999999985

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=95.61  E-value=0.0025  Score=52.32  Aligned_cols=22  Identities=27%  Similarity=0.582  Sum_probs=4.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .++|+|+.|+|||||++.+.+.
T Consensus        22 ~i~v~G~~~~GKssli~~l~~~   43 (208)
T 2yc2_C           22 KVAVVGEATVGKSALISMFTSK   43 (208)
T ss_dssp             EEEEC-----------------
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999999874

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=95.60  E-value=0.007  Score=47.52  Aligned_cols=26  Identities=27%  Similarity=0.295  Sum_probs=22.5

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhCC
Q 022663           40 SPGSRCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        40 ~~Ge~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      ..+.-+.|.||.|+|||+|.+.|...
T Consensus        22 ~~~~~vll~G~~GtGKt~lA~~i~~~   47 (145)
T 3n70_A           22 ETDIAVWLYGAPGTGRMTGARYLHQF   47 (145)
T ss_dssp             TCCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHHh
Confidence            45667999999999999999999863

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=95.58  E-value=0.0052  Score=50.76  Aligned_cols=21  Identities=29%  Similarity=0.490  Sum_probs=19.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 022663           44 RCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G   64 (294)
                      .++|+|+.|+|||||++.+.+
T Consensus        31 ki~vvG~~~vGKSsli~~l~~   51 (201)
T 2hup_A           31 KLVLVGDASVGKTCVVQRFKT   51 (201)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHhh
Confidence            489999999999999999976

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=95.56  E-value=0.0054  Score=51.46  Aligned_cols=22  Identities=32%  Similarity=0.653  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .++|+|+.|+|||||++.+.+.
T Consensus        15 ki~v~G~~~vGKSsli~~l~~~   36 (223)
T 3cpj_B           15 KIVLIGDSGVGKSNLLSRFTKN   36 (223)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            5899999999999999999863

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=95.53  E-value=0.0054  Score=50.76  Aligned_cols=22  Identities=36%  Similarity=0.622  Sum_probs=19.8

Q ss_pred             CEEEEECCCCCcHHHHHHHHhC
Q 022663           43 SRCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        43 e~~~liG~NGsGKSTLlk~i~G   64 (294)
                      =.++|+|+.|+|||||++.+++
T Consensus        31 ~ki~vvG~~~~GKSsLi~~l~~   52 (204)
T 4gzl_A           31 IKCVVVGDGAVGKTCLLISYTT   52 (204)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECcCCCCHHHHHHHHHh
Confidence            4689999999999999998875

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=95.51  E-value=0.0062  Score=50.93  Aligned_cols=21  Identities=43%  Similarity=0.686  Sum_probs=19.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 022663           44 RCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G   64 (294)
                      .++|+|+.|+|||||++.+.+
T Consensus        29 ki~vvG~~~vGKSsL~~~l~~   49 (214)
T 3q3j_B           29 KLVLVGDVQCGKTAMLQVLAK   49 (214)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHhc
Confidence            589999999999999999876

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=95.50  E-value=0.0077  Score=50.62  Aligned_cols=21  Identities=38%  Similarity=0.475  Sum_probs=19.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 022663           44 RCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G   64 (294)
                      ++.|+||.||||+|..+.|+-
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~   22 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAK   22 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999999985

>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14

Probab=95.49  E-value=0.062  Score=45.93  Aligned_cols=52  Identities=17%  Similarity=0.139  Sum_probs=38.3

Q ss_pred             cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC----------hhHHHhhhceEEEee
Q 022663          167 HPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHI----------FDGLETWATHLAYIQ  225 (294)
Q Consensus       167 ~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd----------~~~~~~~~d~v~~l~  225 (294)
                      .+.+++++||---..|   ..++.+.+.    +.|+.||+.-+|          ...+..+||.|..|+
T Consensus        89 ~~~dvViIDEaQF~~~---v~el~~~l~----~~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk  150 (234)
T 2orv_A           89 LGVAVIGIDEGQFFPD---IVEFCEAMA----NAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT  150 (234)
T ss_dssp             TTCSEEEESSGGGCTT---HHHHHHHHH----HTTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred             ccCCEEEEEchhhhhh---HHHHHHHHH----hCCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence            6789999999877654   334444333    368999999999          344667899998875

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=95.49  E-value=0.0084  Score=49.34  Aligned_cols=54  Identities=17%  Similarity=0.230  Sum_probs=36.0

Q ss_pred             cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChh----------HHHhhhceEEEeeC
Q 022663          167 HPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFD----------GLETWATHLAYIQD  226 (294)
Q Consensus       167 ~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~----------~~~~~~d~v~~l~~  226 (294)
                      .+++++++||--. +++.    +.+.|..+..+ +..||++.++.+          .+..+||.|..|+.
T Consensus        75 ~~~dvviIDE~Q~-~~~~----~~~~l~~l~~~-~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~~  138 (184)
T 2orw_A           75 EDTRGVFIDEVQF-FNPS----LFEVVKDLLDR-GIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKKA  138 (184)
T ss_dssp             TTEEEEEECCGGG-SCTT----HHHHHHHHHHT-TCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECCB
T ss_pred             CCCCEEEEECccc-CCHH----HHHHHHHHHHC-CCCEEEEeeccccccCCccchHHHHHHhhheEEeee
Confidence            3678999999743 5543    44555555544 888999888554          23446888877653

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=95.48  E-value=0.0036  Score=58.71  Aligned_cols=31  Identities=45%  Similarity=0.515  Sum_probs=25.1

Q ss_pred             EEEeCC--CEEEEECCCCCcHHHHHHHHhCCcc
Q 022663           37 LGISPG--SRCLLVGANGSGKTTLLKILAGKHM   67 (294)
Q Consensus        37 l~i~~G--e~~~liG~NGsGKSTLlk~i~G~~~   67 (294)
                      |.+.++  .+++|+|++|+||||++..|++.+.
T Consensus        92 ~~~~~~~~~vI~ivG~~GvGKTTla~~La~~l~  124 (432)
T 2v3c_C           92 LELNPKKQNVILLVGIQGSGKTTTAAKLARYIQ  124 (432)
T ss_dssp             CCCCSSSCCCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred             ccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            444434  5999999999999999999998554

>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*

Probab=95.43  E-value=0.046  Score=46.15  Aligned_cols=52  Identities=21%  Similarity=0.268  Sum_probs=38.2

Q ss_pred             CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC----------hhHHHhhhceEEEee
Q 022663          168 PFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHI----------FDGLETWATHLAYIQ  225 (294)
Q Consensus       168 ~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd----------~~~~~~~~d~v~~l~  225 (294)
                      +.+++++||--- +|+...    +.+..++. .|+.||+.-+|          ...+..+||.|..|+
T Consensus       101 ~~dvViIDEaQF-~~~~~V----~~l~~l~~-~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~  162 (214)
T 2j9r_A          101 EMDVIAIDEVQF-FDGDIV----EVVQVLAN-RGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQ  162 (214)
T ss_dssp             SCCEEEECCGGG-SCTTHH----HHHHHHHH-TTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred             CCCEEEEECccc-CCHHHH----HHHHHHhh-CCCEEEEEecccccccCccccHHHHHHhcccEEeee
Confidence            579999999865 776433    55555544 48999999994          345667899998876

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=95.42  E-value=0.0084  Score=50.31  Aligned_cols=25  Identities=28%  Similarity=0.389  Sum_probs=21.6

Q ss_pred             CCEEEEECCCCCcHHHHHHHHhCCc
Q 022663           42 GSRCLLVGANGSGKTTLLKILAGKH   66 (294)
Q Consensus        42 Ge~~~liG~NGsGKSTLlk~i~G~~   66 (294)
                      |.+++|=|+-||||||+++.|+-.+
T Consensus         2 ~kFI~~EG~dGsGKsTq~~~L~~~L   26 (205)
T 4hlc_A            2 SAFITFEGPEGSGKTTVINEVYHRL   26 (205)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHH
Confidence            5688999999999999999998643

>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}

Probab=95.42  E-value=0.0051  Score=56.77  Aligned_cols=32  Identities=38%  Similarity=0.518  Sum_probs=28.1

Q ss_pred             eeeEEEeCCCEEEEECCCCCcHHHHHHHHhCC
Q 022663           34 DFNLGISPGSRCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        34 ~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      |.=+.|.+|+..+|+|+.|+|||||+..|+..
T Consensus       167 D~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~  198 (427)
T 3l0o_A          167 DLFAPIGKGQRGMIVAPPKAGKTTILKEIANG  198 (427)
T ss_dssp             HHHSCCBTTCEEEEEECTTCCHHHHHHHHHHH
T ss_pred             hhcccccCCceEEEecCCCCChhHHHHHHHHH
Confidence            45567899999999999999999999988763

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=95.33  E-value=0.013  Score=48.01  Aligned_cols=33  Identities=24%  Similarity=0.194  Sum_probs=25.5

Q ss_pred             CceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHh
Q 022663           30 PLFYDFNLGISPGSRCLLVGANGSGKTTLLKILA   63 (294)
Q Consensus        30 ~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~   63 (294)
                      ..++..-+.+ .|.-+.|.|+||+|||||...+.
T Consensus         5 ~~lHas~v~v-~G~gvli~G~SGaGKStlal~L~   37 (181)
T 3tqf_A            5 QTWHANFLVI-DKMGVLITGEANIGKSELSLALI   37 (181)
T ss_dssp             EEEESEEEEE-TTEEEEEEESSSSSHHHHHHHHH
T ss_pred             EEEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHH
Confidence            3455555554 67889999999999999987774

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=95.31  E-value=0.0071  Score=50.07  Aligned_cols=21  Identities=33%  Similarity=0.646  Sum_probs=19.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 022663           44 RCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G   64 (294)
                      .++|+|+.|+|||||++.+.+
T Consensus        11 ki~i~G~~~~GKTsli~~l~~   31 (212)
T 2j0v_A           11 KCVTVGDGAVGKTCMLICYTS   31 (212)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            589999999999999999985

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=95.30  E-value=0.0091  Score=49.10  Aligned_cols=43  Identities=21%  Similarity=0.335  Sum_probs=29.7

Q ss_pred             cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChh
Q 022663          167 HPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFD  212 (294)
Q Consensus       167 ~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~  212 (294)
                      .++.+|++||. ..++......+..++.+.  ..+..+|++|+...
T Consensus       101 ~~~~vliiDe~-~~l~~~~~~~l~~~l~~~--~~~~~~i~~~~~~~  143 (226)
T 2chg_A          101 APFKIIFLDEA-DALTADAQAALRRTMEMY--SKSCRFILSCNYVS  143 (226)
T ss_dssp             CSCEEEEEETG-GGSCHHHHHHHHHHHHHT--TTTEEEEEEESCGG
T ss_pred             cCceEEEEeCh-hhcCHHHHHHHHHHHHhc--CCCCeEEEEeCChh
Confidence            46889999995 557777777777776542  23456777777654

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=95.25  E-value=0.0094  Score=52.57  Aligned_cols=24  Identities=42%  Similarity=0.643  Sum_probs=21.5

Q ss_pred             CEEEEECCCCCcHHHHHHHHhCCc
Q 022663           43 SRCLLVGANGSGKTTLLKILAGKH   66 (294)
Q Consensus        43 e~~~liG~NGsGKSTLlk~i~G~~   66 (294)
                      -.++|+|.+|+|||||++.|.|..
T Consensus       121 ~~v~~vG~~nvGKSsliN~l~~~~  144 (282)
T 1puj_A          121 IRALIIGIPNVGKSTLINRLAKKN  144 (282)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             ceEEEEecCCCchHHHHHHHhcCc
Confidence            368999999999999999999853

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=95.25  E-value=0.0092  Score=55.30  Aligned_cols=22  Identities=23%  Similarity=0.232  Sum_probs=19.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .++|+|..++|||||++.|+|.
T Consensus         2 kI~ivG~pnvGKSTL~n~L~~~   23 (397)
T 1wxq_A            2 EIGVVGKPNVGKSTFFSAATLV   23 (397)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC-
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            4799999999999999999984

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=95.24  E-value=0.011  Score=52.11  Aligned_cols=27  Identities=33%  Similarity=0.470  Sum_probs=22.7

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhCCc
Q 022663           40 SPGSRCLLVGANGSGKTTLLKILAGKH   66 (294)
Q Consensus        40 ~~Ge~~~liG~NGsGKSTLlk~i~G~~   66 (294)
                      .++..+.|.||.|+|||||.+.++..+
T Consensus        65 ~~~~~vll~G~~GtGKT~la~~la~~l   91 (309)
T 3syl_A           65 TPTLHMSFTGNPGTGKTTVALKMAGLL   91 (309)
T ss_dssp             CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence            345579999999999999999998743

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=95.19  E-value=0.0094  Score=55.26  Aligned_cols=22  Identities=32%  Similarity=0.450  Sum_probs=19.8

Q ss_pred             CEEEEECCCCCcHHHHHHHHhC
Q 022663           43 SRCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        43 e~~~liG~NGsGKSTLlk~i~G   64 (294)
                      .+++|.||+|||||||.+.|+-
T Consensus         3 ~~i~i~GptgsGKttla~~La~   24 (409)
T 3eph_A            3 KVIVIAGTTGVGKSQLSIQLAQ   24 (409)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHH
T ss_pred             cEEEEECcchhhHHHHHHHHHH
Confidence            4789999999999999999874

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=95.18  E-value=0.0085  Score=56.06  Aligned_cols=22  Identities=32%  Similarity=0.569  Sum_probs=20.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .++|+|+.|+|||||++.|+|.
T Consensus         5 ~V~ivG~~nvGKStL~n~l~~~   26 (436)
T 2hjg_A            5 VVAIVGRPNVGKSTIFNRIAGE   26 (436)
T ss_dssp             EEEEECSTTSSHHHHHHHHEEE
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999883

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=94.00  E-value=0.0041  Score=51.25  Aligned_cols=23  Identities=35%  Similarity=0.602  Sum_probs=20.1

Q ss_pred             CCEEEEECCCCCcHHHHHHHHhC
Q 022663           42 GSRCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        42 Ge~~~liG~NGsGKSTLlk~i~G   64 (294)
                      .=.++|+|+.|+|||||++.+.+
T Consensus        30 ~~ki~v~G~~~~GKSsli~~l~~   52 (204)
T 3th5_A           30 AIKCVVVGDGAVGKTCLLISYTT   52 (204)
Confidence            34689999999999999998876

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=94.99  E-value=0.0027  Score=52.20  Aligned_cols=22  Identities=41%  Similarity=0.673  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .++|+|+.|+|||||++.+.+.
T Consensus        35 ki~vvG~~~~GKSsli~~l~~~   56 (199)
T 3l0i_B           35 KLLLIGDSGVGKSCLLLRFADD   56 (199)
T ss_dssp             EEEEECCTTSCCTTTTTSSBCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999998873

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=94.97  E-value=0.013  Score=53.23  Aligned_cols=26  Identities=27%  Similarity=0.378  Sum_probs=22.1

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCc
Q 022663           41 PGSRCLLVGANGSGKTTLLKILAGKH   66 (294)
Q Consensus        41 ~Ge~~~liG~NGsGKSTLlk~i~G~~   66 (294)
                      ..-+++|+|+.|+|||||++.|++.+
T Consensus        78 ~~~~I~i~G~~G~GKSTl~~~L~~~l  103 (355)
T 3p32_A           78 NAHRVGITGVPGVGKSTAIEALGMHL  103 (355)
T ss_dssp             CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHH
Confidence            44589999999999999999998643

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=94.96  E-value=0.015  Score=52.15  Aligned_cols=26  Identities=38%  Similarity=0.563  Sum_probs=22.7

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhCC
Q 022663           40 SPGSRCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        40 ~~Ge~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .+..-+.|.||.|+|||||.+.++..
T Consensus        43 ~~~~~iLL~GppGtGKT~la~ala~~   68 (322)
T 1xwi_A           43 TPWRGILLFGPPGTGKSYLAKAVATE   68 (322)
T ss_dssp             CCCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCccHHHHHHHHHHH
Confidence            45567999999999999999999973

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=94.96  E-value=0.013  Score=50.91  Aligned_cols=25  Identities=40%  Similarity=0.454  Sum_probs=21.6

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhC
Q 022663           40 SPGSRCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        40 ~~Ge~~~liG~NGsGKSTLlk~i~G   64 (294)
                      .+...+.|.||.|+|||||.+.++.
T Consensus        62 ~~~~~vLl~G~~GtGKT~la~~ia~   86 (272)
T 1d2n_A           62 TPLVSVLLEGPPHSGKTALAAKIAE   86 (272)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHH
Confidence            3445788999999999999999986

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=94.92  E-value=0.014  Score=51.05  Aligned_cols=24  Identities=33%  Similarity=0.527  Sum_probs=21.3

Q ss_pred             CCEEEEECCCCCcHHHHHHHHhCC
Q 022663           42 GSRCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        42 Ge~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      +..+.|.||.|+|||||.+.++..
T Consensus        50 ~~~vll~G~~GtGKT~la~~la~~   73 (310)
T 1ofh_A           50 PKNILMIGPTGVGKTEIARRLAKL   73 (310)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            456889999999999999999864

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=94.91  E-value=0.013  Score=52.21  Aligned_cols=23  Identities=39%  Similarity=0.694  Sum_probs=20.4

Q ss_pred             CEEEEECCCCCcHHHHHHHHhCC
Q 022663           43 SRCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        43 e~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      -.++|+|+.|+|||||++.+.+.
T Consensus         4 ~KI~lvG~~~vGKSSLi~~l~~~   26 (307)
T 3r7w_A            4 SKLLLMGRSGSGKSSMRSIIFSN   26 (307)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            46899999999999999998764

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=94.91  E-value=0.014  Score=53.02  Aligned_cols=25  Identities=48%  Similarity=0.583  Sum_probs=21.9

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhCC
Q 022663           41 PGSRCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        41 ~Ge~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      ++..+.|.||+|+||||+.++|+..
T Consensus        50 ~~~~vll~GppGtGKT~la~~ia~~   74 (363)
T 3hws_A           50 GKSNILLIGPTGSGKTLLAETLARL   74 (363)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHH
Confidence            4557899999999999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	294
d1sgwa_	200	c.37.1.12 (A:) Putative ABC transporter PF0895 {Py	3e-26
d1v43a3	239	c.37.1.12 (A:7-245) Hypothetical protein PH0022, N	2e-24
d1l2ta_	230	c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann	4e-24
d1r0wa_	281	c.37.1.12 (A:) Cystic fibrosis transmembrane condu	8e-23
d1jj7a_	251	c.37.1.12 (A:) Peptide transporter Tap1, C-termina	2e-22
d3b60a1	253	c.37.1.12 (A:329-581) Multidrug resistance ABC tra	6e-22
d2pmka1	241	c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro	1e-21
d3dhwc1	240	c.37.1.12 (C:1-240) Methionine import ATP-binding	1e-21
d1b0ua_	258	c.37.1.12 (A:) ATP-binding subunit of the histidin	1e-21
d2hyda1	255	c.37.1.12 (A:324-578) Putative multidrug export AT	8e-21
d1mv5a_	242	c.37.1.12 (A:) Multidrug resistance ABC transporte	8e-21
d1g2912	240	c.37.1.12 (1:1-240) Maltose transport protein MalK	1e-20
d1g6ha_	254	c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann	3e-20
d1ji0a_	240	c.37.1.12 (A:) Branched chain aminoacid ABC transp	3e-20
d1oxxk2	242	c.37.1.12 (K:1-242) Glucose transport protein GlcV	2e-19
d1l7vc_	231	c.37.1.12 (C:) ABC transporter involved in vitamin	5e-19
d1vpla_	238	c.37.1.12 (A:) Putative ABC transporter TM0544 {Th	8e-18
d2awna2	232	c.37.1.12 (A:4-235) Maltose transport protein MalK	1e-17
d3d31a2	229	c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor	2e-17
d2onka1	240	c.37.1.12 (A:1-240) Molybdate/tungstate import ATP	2e-16
d1ye8a1	178	c.37.1.11 (A:1-178) Hypothetical kinase-like prote	3e-07
d1ls1a2	207	c.37.1.10 (A:89-295) GTPase domain of the signal s	4e-06
g1ii8.1	369	c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio	6e-05
d2i3ba1	189	c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57	1e-04
d1okkd2	207	c.37.1.10 (D:97-303) GTPase domain of the signal r	1e-04
g1f2t.1	292	c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio	2e-04
g1f2t.1	292	c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio	7e-04
d1j8yf2	211	c.37.1.10 (F:87-297) GTPase domain of the signal s	0.001
d1vmaa2	213	c.37.1.10 (A:82-294) GTPase domain of the signal r	0.001
d1nksa_	194	c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobu	0.002
d1n0wa_	242	c.37.1.11 (A:) DNA repair protein Rad51, catalytic	0.002
d2qy9a2	211	c.37.1.10 (A:285-495) GTPase domain of the signal	0.004

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

 Score =  100 bits (250), Expect = 3e-26
 Identities = 37/207 (17%), Positives = 82/207 (39%), Gaps = 30/207 (14%)

Query: 14  IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAG-------KH 66
           +++  +   Y+     P+     + I  G+     G NG GKTTLLK ++        + 
Sbjct: 3   LEIRDLSVGYDK----PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 58

Query: 67  MVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVE 126
           +  G  + +V  +  F   +++    +S                    D+          
Sbjct: 59  IYNGVPITKVKGKIFFLPEEIIVPRKISVE------------------DYLKAVASLYGV 100

Query: 127 GSDPVRRERLIELLDI-DLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVA 185
             +       +E +++ DL+ ++ ++S G  RRVQ+   LL   ++ +LD+  V +D  +
Sbjct: 101 KVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDS 160

Query: 186 RMDLLDFFKDECEQRGATIVYATHIFD 212
           +  +L    +  +++G  I+ +     
Sbjct: 161 KHKVLKSILEILKEKGIVIISSREELS 187

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 96.4 bits (240), Expect = 2e-24
 Identities = 55/235 (23%), Positives = 90/235 (38%), Gaps = 37/235 (15%)

Query: 10  KLNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILA------ 63
           K+  +K+  +   +            NL I  G   +L+G +G GKTT L+++A      
Sbjct: 3   KMVEVKLENLTKRFGNF---TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT 59

Query: 64  -GKHMVGGRDVVQVLNRSS-----FHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFS 117
            G+   G RDV  +  +       F    +               TV      PL+    
Sbjct: 60  EGRIYFGDRDVTYLPPKDRNISMVFQSYAVW-----------PHMTVYENIAFPLK---- 104

Query: 118 AEHMIFGVEGSDPVRR-ERLIELLDID--LQWRMHKVSDGQRRRVQICMGLLHPFKVLLL 174
               I      +  +R     ELL I+  L     ++S GQR+RV +   ++    VLL+
Sbjct: 105 ----IKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLM 160

Query: 175 DEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL 229
           DE   +LD   R+ +    K   ++   T +Y TH      T    +A +  G+L
Sbjct: 161 DEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQL 215

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 95.3 bits (237), Expect = 4e-24
 Identities = 52/238 (21%), Positives = 102/238 (42%), Gaps = 26/238 (10%)

Query: 14  IKVCGMQFSYEGNDKP-PLFYDFNLGISPGSRCLLVGANGSGKTTLLKILA-------GK 65
           IK+  +  +Y+  ++      + NL I  G    ++G +GSGK+T+L I+        G+
Sbjct: 2   IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61

Query: 66  HMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWS----KTVGSAGEIPLQGDFSAEHM 121
             +         N     +   +    + ++   ++     T     E+PL         
Sbjct: 62  VYIDNIKT----NDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPL-----IFKY 112

Query: 122 IFGVEGSDPVRR----ERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEI 177
              + G +  +R     ++ EL +     + +++S GQ++RV I   L +   ++L D+ 
Sbjct: 113 RGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQP 172

Query: 178 TVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKL 235
           T  LD      ++   K   E+ G T+V  TH  + +  +   + Y++DGE+ R EKL
Sbjct: 173 TGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN-VARFGERIIYLKDGEVEREEKL 229

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 93.1 bits (231), Expect = 8e-23
 Identities = 47/251 (18%), Positives = 84/251 (33%), Gaps = 40/251 (15%)

Query: 6   NENEKLNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGK 65
           +  ++ +S     + FS+      P+  + NL I  G    + G+ GSGKT+LL ++ G 
Sbjct: 26  SNGDRKHSSDENNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILG- 84

Query: 66  HMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIP-LQGDFSAEHMIFG 124
                             +      G + + G      V    +   +      E++IFG
Sbjct: 85  ----------------ELEAS---EGIIKHSG-----RVSFCSQFSWIMPGTIKENIIFG 120

Query: 125 VEGSDPVRRE------------RLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVL 172
           V   +   +             +  E  +  L      +S GQR R+ +   +     + 
Sbjct: 121 VSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLY 180

Query: 173 LLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRA 232
           LLD     LDV     + +    +      T +  T   + L   A  +  +  G     
Sbjct: 181 LLDSPFGYLDVFTEEQVFESCVCK-LMANKTRILVTSKMEHLR-KADKILILHQGSSYFY 238

Query: 233 EKLAELDELRN 243
              +EL  LR 
Sbjct: 239 GTFSELQSLRP 249

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.5 bits (227), Expect = 2e-22
 Identities = 42/228 (18%), Positives = 88/228 (38%), Gaps = 20/228 (8%)

Query: 13  SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAG-------K 65
            ++   + F+Y       +       + PG    LVG NGSGK+T+  +L         +
Sbjct: 11  LVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQ 70

Query: 66  HMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGV 125
            ++ G+ + Q  +R        V      +      +++       L    + E +    
Sbjct: 71  LLLDGKPLPQYEHRYLHRQVAAVGQEPQVF-----GRSLQENIAYGLTQKPTMEEIT--- 122

Query: 126 EGSDPVRRERLIELL----DIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDL 181
             +        I  L    D ++     ++S GQR+ V +   L+    VL+LD+ T  L
Sbjct: 123 AAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSAL 182

Query: 182 DVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL 229
           D  +++ +     +  E+   +++  T     +E  A H+ +++ G +
Sbjct: 183 DANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQ-ADHILFLEGGAI 229

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

 Score = 89.9 bits (223), Expect = 6e-22
 Identities = 49/223 (21%), Positives = 86/223 (38%), Gaps = 15/223 (6%)

Query: 14  IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAG-------KH 66
           ++   + F+Y G + P L  + NL I  G    LVG +GSGK+T+  ++           
Sbjct: 14  LEFRNVTFTYPGREVPAL-RNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHI 72

Query: 67  MVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVE 126
           ++ G D+ +    S  +   LV      +L         +            E       
Sbjct: 73  LMDGHDLREYTLASLRNQVALVSQN--VHLFNDTVANNIAYARTEEYSREQIEEAARMAY 130

Query: 127 GSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVAR 186
             D +   ++   LD  +      +S GQR+R+ I   LL    +L+LDE T  LD  + 
Sbjct: 131 AMDFI--NKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESE 188

Query: 187 MDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL 229
             +     +   Q+  T +   H    +E  A  +  ++DG +
Sbjct: 189 RAIQAALDE--LQKNRTSLVIAHRLSTIE-QADEIVVVEDGII 228

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

 Score = 89.2 bits (221), Expect = 1e-21
 Identities = 47/223 (21%), Positives = 89/223 (39%), Gaps = 16/223 (7%)

Query: 14  IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKH------- 66
           I    ++F Y+  D P +  + NL I  G    +VG +GSGK+TL K++   +       
Sbjct: 2   ITFRNIRFRYKP-DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV 60

Query: 67  MVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVE 126
           ++ G D+    + +       V   D   L  S       +   P        +      
Sbjct: 61  LIDGHDLAL-ADPNWLRRQVGVVLQDNVLLNRSI--IDNISLANPGMSVEKVIYAAKLAG 117

Query: 127 GSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVAR 186
             D +    L E  +  +  +   +S GQR+R+ I   L++  K+L+ DE T  LD  + 
Sbjct: 118 AHDFI--SELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESE 175

Query: 187 MDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL 229
             ++         +G T++   H    ++  A  +  ++ G++
Sbjct: 176 HVIMRNMHK--ICKGRTVIIIAHRLSTVKN-ADRIIVMEKGKI 215

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

 Score = 88.8 bits (220), Expect = 1e-21
 Identities = 53/229 (23%), Positives = 95/229 (41%), Gaps = 24/229 (10%)

Query: 14  IKVCGMQFSYEGNDKP-PLFYDFNLGISPGSRCLLVGANGSGKTTLLKIL-------AGK 65
           IK+  +   +    +      + +L +  G    ++GA+G+GK+TL++ +        G 
Sbjct: 2   IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61

Query: 66  HMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGV 125
            +V G+++  +         + +      +     S+TV     +PL+        +   
Sbjct: 62  VLVDGQELTTLSESELTKARRQIGMIFQHF-NLLSSRTVFGNVALPLE--------LDNT 112

Query: 126 EGSDPVRRERLIELLDI-----DLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVD 180
              +   + R+ ELL +             +S GQ++RV I   L    KVLL DE T  
Sbjct: 113 PKDE--VKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSA 170

Query: 181 LDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL 229
           LD      +L+  KD   + G TI+  TH  D ++     +A I +GEL
Sbjct: 171 LDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGEL 219

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

 Score = 89.1 bits (221), Expect = 1e-21
 Identities = 52/233 (22%), Positives = 91/233 (39%), Gaps = 21/233 (9%)

Query: 12  NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILA-------G 64
           N + V  +   Y G+    +    +L    G    ++G++GSGK+T L+ +        G
Sbjct: 1   NKLHVIDLHKRYGGH---EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEG 57

Query: 65  KHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQ--GDFSAEHMI 122
             +V G+++  V  R      ++     L  L    +               +   E  I
Sbjct: 58  AIIVNGQNINLV--RDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPI 115

Query: 123 FGVEGSDPVRRERLIELLDI-----DLQWRM-HKVSDGQRRRVQICMGLLHPFKVLLLDE 176
             +  S    RER ++ L         Q +    +S GQ++RV I   L     VLL DE
Sbjct: 116 QVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDE 175

Query: 177 ITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL 229
            T  LD     ++L   +   E+ G T+V  TH        ++H+ ++  G++
Sbjct: 176 PTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSSHVIFLHQGKI 227

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

 Score = 87.2 bits (216), Expect = 8e-21
 Identities = 51/237 (21%), Positives = 94/237 (39%), Gaps = 42/237 (17%)

Query: 13  SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILA-------GK 65
            I +  + F Y  N+ P L  D NL I  G     VG +G GK+TL+ ++        G+
Sbjct: 16  RIDIDHVSFQYNDNEAPIL-KDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQ 74

Query: 66  HMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGV 125
            ++ G ++   L  S  +   LV   ++ +     S TV              E+++ G 
Sbjct: 75  ILIDGHNIKDFLTGSLRNQIGLVQQDNILF-----SDTV-------------KENILLGR 116

Query: 126 EGSDPVRRERLIEL-------------LDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVL 172
             +         ++              D ++  R  K+S GQ++R+ I    L+   +L
Sbjct: 117 PTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPIL 176

Query: 173 LLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL 229
           +LDE T  LD+ +   + +        +  T +   H    + T A  +  I++G +
Sbjct: 177 ILDEATSALDLESESIIQEALDV--LSKDRTTLIVAHRLSTI-THADKIVVIENGHI 230

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

 Score = 86.8 bits (215), Expect = 8e-21
 Identities = 46/217 (21%), Positives = 94/217 (43%), Gaps = 18/217 (8%)

Query: 21  FSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILA-------GKHMVGGRDV 73
           F+Y  +D   +  D +    P S     G +G GK+T+  +L        G+  + G+ +
Sbjct: 9   FAY--DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPI 66

Query: 74  VQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPV-R 132
              ++  ++       S D + + G+  + +       L+GD++ E +   ++ +     
Sbjct: 67  DN-ISLENWRSQIGFVSQDSAIMAGTIRENL----TYGLEGDYTDEDLWQVLDLAFARSF 121

Query: 133 RERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDF 192
            E + + L+ ++  R  K+S GQR+R+ I    L   K+L+LDE T  LD  +   +   
Sbjct: 122 VENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKA 181

Query: 193 FKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL 229
                  +G T +   H    +   A  + +I+ G++
Sbjct: 182 LDS--LMKGRTTLVIAHRLSTIV-DADKIYFIEKGQI 215

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

 Score = 86.1 bits (213), Expect = 1e-20
 Identities = 43/205 (20%), Positives = 77/205 (37%), Gaps = 16/205 (7%)

Query: 34  DFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL 93
           + +L +  G   +L+G +G GKTT L+++AG        +          D  +      
Sbjct: 21  EMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI-------YIGDKLVADPEKG 73

Query: 94  SYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEG----SDPVRRERLIELLDI----DLQ 145
            ++               L    +    I               +R+ E+ ++    +L 
Sbjct: 74  IFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELL 133

Query: 146 WRM-HKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATI 204
            R   ++S GQR+RV +   ++   +V L+DE   +LD   R+ +    K    Q G T 
Sbjct: 134 NRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTT 193

Query: 205 VYATHIFDGLETWATHLAYIQDGEL 229
           +Y TH      T    +A +  G L
Sbjct: 194 IYVTHDQVEAMTMGDRIAVMNRGVL 218

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 85.4 bits (211), Expect = 3e-20
 Identities = 38/208 (18%), Positives = 78/208 (37%), Gaps = 13/208 (6%)

Query: 34  DFNLGISPGSRCLLVGANGSGKTTLLKILAGKH-------MVGGRDVVQVLNRSSFHDTQ 86
             ++ ++ G   L++G NGSGK+TL+ ++ G             +D+        +H   
Sbjct: 22  GVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 81

Query: 87  LVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDI-DLQ 145
           +        L           GEI                  +    E+  ++L+   L 
Sbjct: 82  VRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLS 141

Query: 146 WRMHK----VSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRG 201
               +    +S GQ + V+I   L+   K++++DE    +      D+ +    E + +G
Sbjct: 142 HLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVL-ELKAKG 200

Query: 202 ATIVYATHIFDGLETWATHLAYIQDGEL 229
            T +   H  D +  +  HL  + +G++
Sbjct: 201 ITFLIIEHRLDIVLNYIDHLYVMFNGQI 228

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

 Score = 85.0 bits (210), Expect = 3e-20
 Identities = 41/209 (19%), Positives = 81/209 (38%), Gaps = 10/209 (4%)

Query: 34  DFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQ-VLNRSSFHDTQLVCSGD 92
             +L +  G    L+GANG+GKTT L  +AG        ++    + ++     +   G 
Sbjct: 24  GIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGI 83

Query: 93  LSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIEL---LDIDLQWRMH 149
                G       +  E  + G           +       E +  L   L   L+    
Sbjct: 84  ALVPEGRRIFPELTVYENLMMG-----AYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGG 138

Query: 150 KVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATH 209
            +S G+++ + I   L+   K+L++DE ++ L  +   ++ +  + +  Q G TI+    
Sbjct: 139 TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQ-KINQEGTTILLVEQ 197

Query: 210 IFDGLETWATHLAYIQDGELRRAEKLAEL 238
              G    A +   ++ G++    K +EL
Sbjct: 198 NALGALKVAHYGYVLETGQIVLEGKASEL 226

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 83.2 bits (205), Expect = 2e-19
 Identities = 49/228 (21%), Positives = 88/228 (38%), Gaps = 24/228 (10%)

Query: 14  IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAG-------KH 66
           I V  +   ++      L  + N+ I  G R  ++G +G+GKTT ++I+AG       + 
Sbjct: 4   IIVKNVSKVFKKGKVVALD-NVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL 62

Query: 67  MVGGRDVVQ---VLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIF 123
               R V     ++         +V            + T       PL     ++  I 
Sbjct: 63  YFDDRLVASNGKLIVPPEDRKIGMVFQ----TWALYPNLTAFENIAFPLTNMKMSKEEIR 118

Query: 124 GVEGSDPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDL 181
                   R E + ++LDI   L     ++S  Q++RV +   L+    +LLLDE   +L
Sbjct: 119 K-------RVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNL 171

Query: 182 DVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL 229
           D   R       K+   + G T++  +H    +   A  +  +  G+L
Sbjct: 172 DARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKL 219

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

 Score = 81.9 bits (202), Expect = 5e-19
 Identities = 42/205 (20%), Positives = 75/205 (36%), Gaps = 20/205 (9%)

Query: 34  DFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL 93
             +  +  G    LVG NG+GK+TLL  +AG     G          ++  T+L      
Sbjct: 17  PLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHR-- 74

Query: 94  SYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDID--LQWRMHKV 151
                     +      P          +   + +       +   L +D  L    +++
Sbjct: 75  --------AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQL 126

Query: 152 SDGQRRRVQICMGLLHPF-------KVLLLDEITVDLDVVARMDLLDFFKDECEQRGATI 204
           S G+ +RV++   +L          ++LLLDE    LDV  +  L       C+Q G  I
Sbjct: 127 SGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQ-GLAI 185

Query: 205 VYATHIFDGLETWATHLAYIQDGEL 229
           V ++H  +     A     ++ G++
Sbjct: 186 VMSSHDLNHTLRHAHRAWLLKGGKM 210

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

 Score = 78.5 bits (193), Expect = 8e-18
 Identities = 49/219 (22%), Positives = 86/219 (39%), Gaps = 14/219 (6%)

Query: 34  DFNLGISPGSRCLLVGANGSGKTTLLKILAG--KHMVGGRDVVQVLNRSSFHDTQLVCSG 91
             +  I  G    L+G NG+GKTT L+I++   K   G   V         H+ + + S 
Sbjct: 20  GISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISY 79

Query: 92  DLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRR-ERLIELLDID--LQWRM 148
                G   +                     +    S+     ER  E+  +   ++ R+
Sbjct: 80  LPEEAGAYRNMQGIEYLRFVAG--------FYASSSSEIEEMVERATEIAGLGEKIKDRV 131

Query: 149 HKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYAT 208
              S G  R++ I   L+   ++ +LDE T  LDV+   ++    K +  Q G TI+ ++
Sbjct: 132 STYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILK-QASQEGLTILVSS 190

Query: 209 HIFDGLETWATHLAYIQDGELRRAEKLAELDELRNSTNL 247
           H    +E     +A I +G +     + EL E   + N+
Sbjct: 191 HNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQNI 229

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 77.7 bits (191), Expect = 1e-17
 Identities = 52/234 (22%), Positives = 95/234 (40%), Gaps = 25/234 (10%)

Query: 14  IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDV 73
           +++  +  ++       +  D NL I  G   + VG +G GK+TLL+++AG   +   D+
Sbjct: 1   VQLQNVTKAWGEV---VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL 57

Query: 74  VQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGD-FSAEHMIFGVE---GSD 129
                         +    ++    +            L      AE+M FG++      
Sbjct: 58  -------------FIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKK 104

Query: 130 PVRRERLIELLDI-----DLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVV 184
            V  +R+ ++ ++      L  +   +S GQR+RV I   L+    V LLDE   +LD  
Sbjct: 105 EVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAA 164

Query: 185 ARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL 238
            R+ +        ++ G T++Y TH      T A  +  +  G + +  K  EL
Sbjct: 165 LRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 218

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

 Score = 77.0 bits (189), Expect = 2e-17
 Identities = 37/201 (18%), Positives = 82/201 (40%), Gaps = 17/201 (8%)

Query: 34  DFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL 93
           + +L +  G   +++G  G+GKT  L+++AG H+     ++      +    +       
Sbjct: 18  NLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIA-- 75

Query: 94  SYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDI-----DLQWRM 148
            ++  ++S                 +++ FG+        +R+++          L    
Sbjct: 76  -FVYQNYS---------LFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNP 125

Query: 149 HKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYAT 208
             +S G+++RV +   L+   K+LLLDE    LD   + +  +      ++   T+++ T
Sbjct: 126 LTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHIT 185

Query: 209 HIFDGLETWATHLAYIQDGEL 229
           H        A  +A + DG+L
Sbjct: 186 HDQTEARIMADRIAVVMDGKL 206

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 74.3 bits (182), Expect = 2e-16
 Identities = 39/210 (18%), Positives = 77/210 (36%), Gaps = 27/210 (12%)

Query: 32  FYDFNLGIS---PGSRCLLVGANGSGKTTLLKILA-------GKHMVGGRDVVQVLNRSS 81
             +F L +        C+L+G  G+GK+  L+++A       G+  + G D+  +     
Sbjct: 11  LGNFRLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPL--PPE 68

Query: 82  FHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLD 141
                 V                 +           A  +          R   + E L 
Sbjct: 69  RRGIGFVPQDY-------------ALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLG 115

Query: 142 ID--LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQ 199
           I   L  +  ++S G+R+RV +   L+   ++LLLDE    +D+  +  L++  +    +
Sbjct: 116 IAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQRE 175

Query: 200 RGATIVYATHIFDGLETWATHLAYIQDGEL 229
               I++ TH        A  +A + +G +
Sbjct: 176 FDVPILHVTHDLIEAAMLADEVAVMLNGRI 205

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

 Score = 47.3 bits (111), Expect = 3e-07
 Identities = 21/186 (11%), Positives = 41/186 (22%), Gaps = 30/186 (16%)

Query: 44  RCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKT 103
           + ++ G  G GKTTL+K +  +                           L      +   
Sbjct: 2   KIIITGEPGVGKTTLVKKIVER---------------------------LGKRAIGFWTE 34

Query: 104 VGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICM 163
                E   +  F         +            +    +  +  +             
Sbjct: 35  EVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQYFEELAIPILERAYRE 94

Query: 164 GLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAY 223
                 KV+++DEI             D  +         +V    I D        +  
Sbjct: 95  AKKDRRKVIIIDEIGKMELF--SKKFRDLVRQIMHDPNVNVVATIPIRDVHP-LVKEIRR 151

Query: 224 IQDGEL 229
           +    L
Sbjct: 152 LPGAVL 157

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

 Score = 44.3 bits (104), Expect = 4e-06
 Identities = 27/133 (20%), Positives = 45/133 (33%), Gaps = 13/133 (9%)

Query: 46  LLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVG 105
            LVG  GSGKTT    LA  +   GR  +            LV +           + +G
Sbjct: 14  FLVGLQGSGKTTTAAKLALYYKGKGRRPL------------LVAADTQRPAAREQLRLLG 61

Query: 106 SAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGL 165
               +P+      E         +   R    +L+ +D   R+           ++   +
Sbjct: 62  EKVGVPVLEVMDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKE-V 120

Query: 166 LHPFKVLLLDEIT 178
           L P +VLL+ +  
Sbjct: 121 LGPDEVLLVLDAM 133

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (92), Expect = 1e-04
 Identities = 21/168 (12%), Positives = 39/168 (23%), Gaps = 2/168 (1%)

Query: 46  LLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS--GDLSYLGGSWSKT 103
            L G  G GKTTL+   +      G  V            + +      LS   G  S+ 
Sbjct: 5   FLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSRV 64

Query: 104 VGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICM 163
                    +       +         +   R  +      Q        G+        
Sbjct: 65  GLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLF 124

Query: 164 GLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIF 211
                  +     I +    V +   L   ++   ++   +   T   
Sbjct: 125 IQAVRQTLSTPGTIILGTIPVPKGKPLALVEEIRNRKDVKVFNVTKEN 172

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

 Score = 40.1 bits (93), Expect = 1e-04
 Identities = 35/192 (18%), Positives = 58/192 (30%), Gaps = 22/192 (11%)

Query: 46  LLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVG 105
           L+VG NG GKTT +  L   +   G+ V+                      GG+     G
Sbjct: 10  LVVGVNGVGKTTTIAKLGRYYQNLGKKVM------------FCAGDTFRAAGGTQLSEWG 57

Query: 106 SAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGL 165
               IP+               +    + R  +LL +D               ++     
Sbjct: 58  KRLSIPVIQGPEGTDPAALAYDAVQAMKARGYDLLFVDTA-GRLHTKHNLMEELKKVKRA 116

Query: 166 LHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATH---------IFDGLET 216
           +         E+ + LD V   + L+  K   E  G T V  T          +   + T
Sbjct: 117 IAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAVGLTGVIVTKLDGTAKGGVLIPIVRT 176

Query: 217 WATHLAYIQDGE 228
               + ++  GE
Sbjct: 177 LKVPIKFVGVGE 188

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} Length = 211

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

 Score = 37.1 bits (85), Expect = 0.001
 Identities = 28/192 (14%), Positives = 59/192 (30%), Gaps = 26/192 (13%)

Query: 46  LLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVG 105
           +LVG  G+GK T    LA  +   G  V             LV +           + +G
Sbjct: 16  MLVGVQGTGKATTAGKLAYFYKKKGFKVG------------LVGADVYRPAALEQLQQLG 63

Query: 106 SAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGL 165
               +P+ G+   + ++   +          +E++ +D   R             +   +
Sbjct: 64  QQIGVPVYGEPGEKDVVGIAKRGVEKFLSEKMEIIIVDTAGRHGY-----GEEAALLEEM 118

Query: 166 LHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATH---------IFDGLET 216
            + ++ +  DE+T+ +D        D      +      +  T              +  
Sbjct: 119 KNIYEAIKPDEVTLVIDASIGQKAYDLASKFNQASKIGTIIITKMDGTAKGGGALSAVAA 178

Query: 217 WATHLAYIQDGE 228
               + +I  GE
Sbjct: 179 TGATIKFIGTGE 190

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} Length = 213

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

 Score = 37.0 bits (85), Expect = 0.001
 Identities = 37/213 (17%), Positives = 62/213 (29%), Gaps = 24/213 (11%)

Query: 36  NLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSY 95
           N+   P    ++VG NG+GKTT    LA   +  G+ VV            L  +     
Sbjct: 5   NVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVV------------LAAADTFRA 52

Query: 96  LGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQ 155
                 K  G      +               +      R  +++ ID   R+H   +  
Sbjct: 53  AAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGRLHTKKN-L 111

Query: 156 RRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATH------ 209
              ++    ++         E  + +D     + L   K   E    T +  T       
Sbjct: 112 MEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQAKIFKEAVNVTGIILTKLDGTAK 171

Query: 210 ---IFDGLETWATHLAYIQDGELRRAEKLAELD 239
                         + +I  GE  +AE L   D
Sbjct: 172 GGITLAIARELGIPIKFIGVGE--KAEDLRPFD 202

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

 Score = 36.5 bits (83), Expect = 0.002
 Identities = 23/159 (14%), Positives = 50/159 (31%), Gaps = 14/159 (8%)

Query: 46  LLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVG 105
           ++ G  G GK+T+L  +       G +   +    ++ D  L  +  L Y          
Sbjct: 5   IVTGIPGVGKSTVLAKVKEILDNQGINNKII----NYGDFMLATALKLGYAKDRDEMRKL 60

Query: 106 SAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGL 165
           S  +       +A+ +           R      L ID    +   S          +  
Sbjct: 61  SVEKQKKLQIDAAKGIA-------EEARAGGEGYLFIDTHAVIRTPSGYLPGLPSYVITE 113

Query: 166 LHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATI 204
           ++P  + LL+    D  ++      D  ++  +    ++
Sbjct: 114 INPSVIFLLE---ADPKIILSRQKRDTTRNRNDYSDESV 149

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (83), Expect = 0.002
 Identities = 22/140 (15%), Positives = 33/140 (23%), Gaps = 5/140 (3%)

Query: 38  GISPGSRCLLVGANGSGKTTLLKILA-----GKHMVGGRDVVQVLNRSSFHDTQLVCSGD 92
           GI  GS   + G   +GKT +   LA          GG      ++       + + +  
Sbjct: 19  GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVA 78

Query: 93  LSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVS 152
             Y           A       D   + +          R   LI      L    +   
Sbjct: 79  ERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGR 138

Query: 153 DGQRRRVQICMGLLHPFKVL 172
                R       L     L
Sbjct: 139 GELSARQMHLARFLRMLLRL 158

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} Length = 211

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

 Score = 35.4 bits (81), Expect = 0.004
 Identities = 37/202 (18%), Positives = 66/202 (32%), Gaps = 22/202 (10%)

Query: 36  NLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSY 95
           N+        L+VG NG GKTT +  LA +    G+ V+            L        
Sbjct: 3   NVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVM------------LAAGDTFRA 50

Query: 96  LGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQ 155
                 +  G    IP+    +       +  +    + R I++L  D   R+       
Sbjct: 51  AAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKARNIDVLIADTAGRLQ-NKSHL 109

Query: 156 RRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATH------ 209
              ++  + ++    V    E+ + +D     + +   K   E  G T +  T       
Sbjct: 110 MEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAVGLTGITLTKLDGTAK 169

Query: 210 ---IFDGLETWATHLAYIQDGE 228
              IF   + +   + YI  GE
Sbjct: 170 GGVIFSVADQFGIPIRYIGVGE 191

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	294
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	100.0
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	100.0
d1g2912	240	Maltose transport protein MalK, N-terminal domain	100.0
d2awna2	232	Maltose transport protein MalK, N-terminal domain	100.0
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	100.0
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	100.0
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	100.0
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	100.0
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	100.0
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	100.0
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	100.0
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	100.0
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	100.0
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	100.0
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	100.0
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	100.0
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	100.0
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	100.0
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	100.0
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	100.0
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.91
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	99.79
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.48
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	99.23
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	99.14
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	98.95
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	98.82
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	98.6
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	98.14
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	98.0
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	97.98
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	97.92
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	97.79
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	97.78
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.77
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	97.76
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.76
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.64
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.6
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	97.58
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.58
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	97.57
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	97.56
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.49
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.48
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.47
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.47
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.45
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.4
d1ls1a2	207	GTPase domain of the signal sequence recognition p	97.39
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.39
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	97.36
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.36
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	97.35
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.35
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	97.35
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.34
d1vmaa2	213	GTPase domain of the signal recognition particle r	97.33
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	97.32
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.29
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.29
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.28
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	97.27
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	97.22
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.17
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	97.14
d1j8yf2	211	GTPase domain of the signal sequence recognition p	97.12
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	97.12
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	97.1
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.1
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.08
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	97.07
d1okkd2	207	GTPase domain of the signal recognition particle r	97.06
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	97.05
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	97.04
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.04
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.02
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	97.01
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	97.0
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	97.0
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	96.98
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	96.98
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	96.97
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	96.92
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	96.92
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	96.91
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	96.91
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	96.9
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	96.9
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.89
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.88
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	96.88
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	96.87
d1nrjb_	209	Signal recognition particle receptor beta-subunit	96.85
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	96.85
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	96.84
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.8
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	96.8
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	96.78
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	96.77
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.77
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	96.69
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	96.68
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	96.66
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.66
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	96.64
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	96.63
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	96.6
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.6
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.59
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.58
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	96.57
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	96.56
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	96.55
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	96.52
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	96.5
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	96.5
d2qy9a2	211	GTPase domain of the signal recognition particle r	96.49
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.46
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	96.44
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	96.44
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	96.42
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.41
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.4
d2fh5b1	207	Signal recognition particle receptor beta-subunit	96.39
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.37
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	96.36
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	96.36
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.34
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	96.32
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	96.31
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	96.29
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.29
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	96.29
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.28
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	96.22
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	96.21
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	96.19
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.19
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	96.18
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	96.18
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	96.16
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	96.11
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	96.09
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	96.07
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	96.06
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	96.06
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.06
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	96.04
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	96.04
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.03
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	96.01
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	95.99
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	95.99
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	95.95
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	95.9
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	95.9
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	95.89
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	95.87
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	95.86
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	95.85
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	95.83
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	95.82
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	95.81
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	95.81
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	95.8
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	95.79
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	95.79
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	95.74
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	95.74
d1xpua3	289	Transcription termination factor Rho, ATPase domai	95.71
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	95.71
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	95.68
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	95.65
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	95.65
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	95.63
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	95.63
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	95.62
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	95.61
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	95.57
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	95.56
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	95.49
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	95.49
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	95.43
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	95.43
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	95.43
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	95.42
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	95.41
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	95.4
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	95.39
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	95.38
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	95.29
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	95.29
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	95.28
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	95.26
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	95.25
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	95.18
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.18
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	95.11
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	95.1
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	95.08
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	95.07
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	95.05
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	95.01
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	94.89
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	94.73
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	94.71
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	94.65
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	94.62
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	94.58
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	94.58
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	94.57
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	94.43
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	94.38
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	94.34
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	94.32
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	94.23
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	94.06
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	93.99
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	93.94
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	93.84
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	93.63
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	93.62
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	93.49
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	93.34
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	93.25
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	93.16
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	93.14
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	93.07
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	92.63
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	92.59
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	92.19
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	92.13
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	92.03
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	92.02
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	91.83
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	91.75
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	91.51
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	91.5
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	91.33
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	90.83
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	90.77
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	90.41
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	90.02
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	89.73
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	88.79
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	88.28
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	87.98
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	87.83
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	87.56
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	87.54
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	87.52
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	87.51
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	86.96
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	86.59
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	86.22
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	86.13
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	86.09
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	86.01
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	85.69
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	85.0
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	84.97
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	84.22
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	84.19
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	83.9
d1tuea_	205	Replication protein E1 helicase domain {Human papi	83.39
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	82.51
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	80.72

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=2.2e-58  Score=400.35  Aligned_cols=216  Identities=23%  Similarity=0.255  Sum_probs=180.4

Q ss_pred             cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663           11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS   90 (294)
Q Consensus        11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~   90 (294)
                      |..|+++||+|+|++   ..+|+||||+|++||+++|+||||||||||+|+|+|++.|+ +|.+.++|.+......    
T Consensus         4 M~~I~v~nlsk~yg~---~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~-sG~I~i~g~~i~~~~~----   75 (239)
T d1v43a3           4 MVEVKLENLTKRFGN---FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT-EGRIYFGDRDVTYLPP----   75 (239)
T ss_dssp             CCCEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS-EEEEEETTEECTTSCG----
T ss_pred             cCeEEEEEEEEEECC---EEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC-CCEEEEcceecccCCc----
Confidence            446999999999976   67999999999999999999999999999999999999987 9999999986532111    


Q ss_pred             CCcccccccccccccccCc-ccccccccHHHHh-hcCC--CCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHH
Q 022663           91 GDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-FGVE--GSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQ  160 (294)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~--~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~  160 (294)
                               ..+.+++++| ..+++.+++.+++ +...  ..+    .+++.++++.+++.  .++++.+|||||||||+
T Consensus        76 ---------~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRva  146 (239)
T d1v43a3          76 ---------KDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVA  146 (239)
T ss_dssp             ---------GGGTEEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHH
T ss_pred             ---------ccceEEEEeechhhcccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHH
Confidence                     1223555554 4466667765543 3321  222    23456788999986  68899999999999999


Q ss_pred             HHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHH
Q 022663          161 ICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDE  240 (294)
Q Consensus       161 lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  240 (294)
                      |||||+.+|++|||||||+|||+.++.+++++|.+++++.|+|||+||||++++.++||||++|++|+|++.|+++++++
T Consensus       147 iAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~  226 (239)
T d1v43a3         147 VARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYL  226 (239)
T ss_dssp             HHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred             HHhhhccCCCceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            99999999999999999999999999999999999988889999999999999999999999999999999999999987


Q ss_pred             hhh
Q 022663          241 LRN  243 (294)
Q Consensus       241 ~~~  243 (294)
                      .+.
T Consensus       227 ~P~  229 (239)
T d1v43a3         227 RPN  229 (239)
T ss_dssp             CCS
T ss_pred             CCC
Confidence            654

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=100.00  E-value=8.4e-58  Score=394.25  Aligned_cols=213  Identities=21%  Similarity=0.282  Sum_probs=182.3

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      ||+++||||+|++    .+|+||||+|++||+++|+||||||||||+|+|+|++.|+ +|.+.++|.+.....       
T Consensus         1 mi~v~nlsk~y~~----~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~-sG~I~~~G~~i~~~~-------   68 (229)
T d3d31a2           1 MIEIESLSRKWKN----FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD-SGRILLDGKDVTDLS-------   68 (229)
T ss_dssp             CEEEEEEEEECSS----CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCS-EEEEEETTEECTTSC-------
T ss_pred             CEEEEEEEEEeCC----EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCC-CCEEEEccEeccccc-------
Confidence            5899999999964    4899999999999999999999999999999999999887 999999997653211       


Q ss_pred             cccccccccccccccCc-ccccccccHHHHh-hcC---CCCcHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHHH
Q 022663           93 LSYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-FGV---EGSDPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMGL  165 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~---~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL  165 (294)
                            ..++.++++++ ..+++.+++.+++ ++.   .....+++.++++.+++.  .++++.+|||||||||+|||||
T Consensus        69 ------~~~r~ig~v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGG~~QRvaiAraL  142 (229)
T d3d31a2          69 ------PEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARAL  142 (229)
T ss_dssp             ------HHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHT
T ss_pred             ------hhHhcceeeccccccCccccHHHHHHHHHhhccccHHHHHHHHHHHhcchhhHhCChhhCCHHHhcchhhhhhh
Confidence                  11234555554 4566677765543 322   123456778889999986  6889999999999999999999


Q ss_pred             ccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHHhhh
Q 022663          166 LHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDELRN  243 (294)
Q Consensus       166 ~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~  243 (294)
                      +++|++|||||||+|||+.++.+++++|.++.++.|.|||+||||++++..+||||++|++|++++.|+++++++.+.
T Consensus       143 ~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~P~  220 (229)
T d3d31a2         143 VTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPV  220 (229)
T ss_dssp             TSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCC
T ss_pred             hccCCceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence            999999999999999999999999999999988889999999999999999999999999999999999999987644

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=100.00  E-value=1.2e-57  Score=396.12  Aligned_cols=222  Identities=21%  Similarity=0.288  Sum_probs=183.6

Q ss_pred             cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663           11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS   90 (294)
Q Consensus        11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~   90 (294)
                      |+.|+++||+|+|++   ..+|+||||+|++||+++|+||||||||||+|+|+|++.|+ +|.+.++|.+........  
T Consensus         1 M~~i~v~nl~k~yg~---~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~-sG~I~~~g~~i~~~~~~~--   74 (240)
T d1g2912           1 MAGVRLVDVWKVFGE---VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS-RGQIYIGDKLVADPEKGI--   74 (240)
T ss_dssp             CEEEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS-EEEEEETTEEEEEGGGTE--
T ss_pred             CCcEEEEeEEEEECC---EEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC-CCEEEECCEEecccchhh--
Confidence            347999999999975   57999999999999999999999999999999999999987 999999997653211100  


Q ss_pred             CCcccccccccccccccCc-ccccccccHHHHh-hc--CCCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHH
Q 022663           91 GDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-FG--VEGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQ  160 (294)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~--~~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~  160 (294)
                           .....++.++++++ ..+++.++..+++ ++  .....    .+++.++++.+++.  .++++++|||||||||+
T Consensus        75 -----~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p~~LSGGqkQRv~  149 (240)
T d1g2912          75 -----FVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVA  149 (240)
T ss_dssp             -----ECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHH
T ss_pred             -----hcccccccceecccchhhcchhhhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHH
Confidence                 00111334555554 4566677765543 32  12222    23467788899986  58899999999999999


Q ss_pred             HHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHH
Q 022663          161 ICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDE  240 (294)
Q Consensus       161 lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  240 (294)
                      |||||+.+|++|||||||+|||+.++..++++|.+++++.|.|||+||||++++..+||||++|++|+|++.|+++++++
T Consensus       150 IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~~  229 (240)
T d1g2912         150 LGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYD  229 (240)
T ss_dssp             HHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred             HHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            99999999999999999999999999999999999988889999999999999999999999999999999999999987


Q ss_pred             hhh
Q 022663          241 LRN  243 (294)
Q Consensus       241 ~~~  243 (294)
                      .+.
T Consensus       230 ~P~  232 (240)
T d1g2912         230 KPA  232 (240)
T ss_dssp             SCS
T ss_pred             CCC
Confidence            654

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=6.8e-58  Score=395.85  Aligned_cols=213  Identities=25%  Similarity=0.338  Sum_probs=156.2

Q ss_pred             EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCc
Q 022663           14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL   93 (294)
Q Consensus        14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~   93 (294)
                      |+++||+|+|++   ..+|+||||+|++||+++|+||||||||||+|+|+|++.|+ +|.+.++|.+......       
T Consensus         1 Iev~nv~k~yg~---~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~-sG~I~i~g~~i~~~~~-------   69 (232)
T d2awna2           1 VQLQNVTKAWGE---VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT-SGDLFIGEKRMNDTPP-------   69 (232)
T ss_dssp             EEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS-EEEEEESSSCCTTSCG-------
T ss_pred             CEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC-CCEEEECCEECCCCch-------
Confidence            689999999976   67999999999999999999999999999999999999887 9999999987532111       


Q ss_pred             ccccccccccccccCc-ccccccccHHHHh-hcCC--C---C-cHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHH
Q 022663           94 SYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-FGVE--G---S-DPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICM  163 (294)
Q Consensus        94 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~--~---~-~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAr  163 (294)
                            .++.++++++ ..+++.++..+++ ++..  .   . ..+++.++++.+++.  .++++++|||||||||+|||
T Consensus        70 ------~~r~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSGGqkQRvaiAr  143 (232)
T d2awna2          70 ------AERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGR  143 (232)
T ss_dssp             ------GGTCEEEECSSCCC---------------------CHHHHHHHHHHHHC---------------------CHHH
T ss_pred             ------hhceeeeeccccccccchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCChhhhhCChhhCCHHHHHHHHHHH
Confidence                  1223555554 3456666654433 3321  1   1 134567889999985  58899999999999999999


Q ss_pred             HHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHHhhh
Q 022663          164 GLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDELRN  243 (294)
Q Consensus       164 aL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~  243 (294)
                      ||+.+|++|||||||+|||+.++.++++.|.++.++.|+|||+||||++++..+||||++|++|+|++.|+++++++.+.
T Consensus       144 aL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~  223 (232)
T d2awna2         144 TLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPA  223 (232)
T ss_dssp             HHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCS
T ss_pred             HHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCCC
Confidence            99999999999999999999999999999999988889999999999999999999999999999999999999987654

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=100.00  E-value=1.6e-57  Score=395.23  Aligned_cols=222  Identities=23%  Similarity=0.288  Sum_probs=184.9

Q ss_pred             ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663           12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG   91 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~   91 (294)
                      ..|+++||+|+|+.+ ...+|+||||+|++||+++|+||||||||||+|+|+|++.|+ +|.+.++|.+.......    
T Consensus         2 ~~i~v~nlsk~y~~g-~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~-~G~I~~~g~~i~~~~~~----   75 (242)
T d1oxxk2           2 VRIIVKNVSKVFKKG-KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS-TGELYFDDRLVASNGKL----   75 (242)
T ss_dssp             CCEEEEEEEEEEGGG-TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCS-EEEEEETTEEEEETTEE----
T ss_pred             CEEEEEeEEEEECCC-CEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCC-CceEEECCEEeecCchh----
Confidence            469999999999532 257899999999999999999999999999999999999887 99999999865431110    


Q ss_pred             CcccccccccccccccCc-ccccccccHHH-HhhcCC--CCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHH
Q 022663           92 DLSYLGGSWSKTVGSAGE-IPLQGDFSAEH-MIFGVE--GSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQI  161 (294)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~--~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~l  161 (294)
                          .....++.+++++| +.+++.+++.+ +.++..  ..+    .+++.++++.+++.  .++++++|||||||||+|
T Consensus        76 ----~~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p~~LSGGqkQRvai  151 (242)
T d1oxxk2          76 ----IVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVAL  151 (242)
T ss_dssp             ----SSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHH
T ss_pred             ----hcchhhccceEEeccccccccccHHHHhhhhhHhhcCCHHHHHHHHHHHHhhcChHhhhhCChhhCCHHHHhHHHH
Confidence                00112334666655 44667777654 444432  222    23567889999986  589999999999999999


Q ss_pred             HHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHHh
Q 022663          162 CMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDEL  241 (294)
Q Consensus       162 AraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  241 (294)
                      ||||+.+|++|||||||++||+.++.+++++|+++.++.|+|||+||||++++.++||||++|++|+|++.|+++++++.
T Consensus       152 ARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~~  231 (242)
T d1oxxk2         152 ARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDN  231 (242)
T ss_dssp             HHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred             HhHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence            99999999999999999999999999999999999888899999999999999999999999999999999999999876


Q ss_pred             hh
Q 022663          242 RN  243 (294)
Q Consensus       242 ~~  243 (294)
                      +.
T Consensus       232 P~  233 (242)
T d1oxxk2         232 PV  233 (242)
T ss_dssp             CS
T ss_pred             CC
Confidence            54

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3e-57  Score=393.64  Aligned_cols=221  Identities=23%  Similarity=0.287  Sum_probs=181.5

Q ss_pred             cEEEcceEEEcCCCCC-CCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663           13 SIKVCGMQFSYEGNDK-PPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG   91 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~-~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~   91 (294)
                      ||+++||+++|+.+.. ..+|+||||+|++||+++|+||||||||||+|+|+|+..|+ +|.+.++|.+.......    
T Consensus         1 mi~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~-sG~I~~~g~~i~~~~~~----   75 (240)
T d3dhwc1           1 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT-EGSVLVDGQELTTLSES----   75 (240)
T ss_dssp             CEEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCS-EEEEEETTEEECTTCHH----
T ss_pred             CEEEEeEEEEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCcccc-CCceEEcCeEeeeCChh----
Confidence            5899999999975321 24799999999999999999999999999999999999887 99999999865321110    


Q ss_pred             CcccccccccccccccCc-ccccccccHHH-Hhhc--CCCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHH
Q 022663           92 DLSYLGGSWSKTVGSAGE-IPLQGDFSAEH-MIFG--VEGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQI  161 (294)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~--~~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~l  161 (294)
                      ..    ..+++.+++++| ..+++.+++.+ +.++  .....    .+++.++++.+++.  .++++++|||||||||+|
T Consensus        76 ~~----~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~~~LSGG~~QRvai  151 (240)
T d3dhwc1          76 EL----TKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAI  151 (240)
T ss_dssp             HH----HHHHHHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCBSCCCHHHHHHHHH
T ss_pred             hh----hhhhccccccccccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHH
Confidence            00    012234666665 34566666544 3332  11111    34567889999985  688999999999999999


Q ss_pred             HHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHHh
Q 022663          162 CMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDEL  241 (294)
Q Consensus       162 AraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  241 (294)
                      ||||+.+|++|||||||+|||+.++.+++++|.++.++.|+|||+||||++++..+||||++|++|+|++.|+++++++.
T Consensus       152 AraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~~~  231 (240)
T d3dhwc1         152 ARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSH  231 (240)
T ss_dssp             HHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTTCS
T ss_pred             hhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence            99999999999999999999999999999999999888899999999999999999999999999999999999998765


Q ss_pred             h
Q 022663          242 R  242 (294)
Q Consensus       242 ~  242 (294)
                      +
T Consensus       232 P  232 (240)
T d3dhwc1         232 P  232 (240)
T ss_dssp             S
T ss_pred             C
Confidence            4

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=100.00  E-value=9.1e-56  Score=386.06  Aligned_cols=216  Identities=19%  Similarity=0.230  Sum_probs=174.2

Q ss_pred             ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663           12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG   91 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~   91 (294)
                      .+|+++||+++|++   ..+|+||||+|++||++||+||||||||||+|+|+|+++|+ +|.+.++|.+.........  
T Consensus         5 ~~Lev~~l~k~yg~---~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~-~G~I~~~G~~i~~~~~~~~--   78 (240)
T d1ji0a_           5 IVLEVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ-KGKIIFNGQDITNKPAHVI--   78 (240)
T ss_dssp             EEEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS-EEEEEETTEECTTCCHHHH--
T ss_pred             eEEEEeeEEEEECC---EEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC-ccEEEecccccccccHHHH--
Confidence            48999999999976   67999999999999999999999999999999999999887 9999999987543211000  


Q ss_pred             CcccccccccccccccCc-ccccccccHHHHh-hcCCC---Cc--HHHHHHHHHHc-CC--CcccccccCCHHHHHHHHH
Q 022663           92 DLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-FGVEG---SD--PVRRERLIELL-DI--DLQWRMHKVSDGQRRRVQI  161 (294)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~---~~--~~~~~~~l~~l-~l--~~~~~~~~LSgGqkqRv~l  161 (294)
                              .+..+++.++ ..+++.++..++. +....   ..  ....+++++.+ ++  ..++++++|||||||||+|
T Consensus        79 --------~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSGG~~Qrv~i  150 (240)
T d1ji0a_          79 --------NRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAI  150 (240)
T ss_dssp             --------HHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHH
T ss_pred             --------HHhcccccCcccccCCcccHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhChHHHHhCchhhCCHHHHHHHHH
Confidence                    0112333333 3456677765543 32211   11  12234455544 33  2678899999999999999


Q ss_pred             HHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHHh
Q 022663          162 CMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDEL  241 (294)
Q Consensus       162 AraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  241 (294)
                      ||||+.+|++|||||||+|||+.++.+++++|++++++ |+|||+||||++++.++||||++|++|++++.|+++++.+.
T Consensus       151 AraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~-g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~  229 (240)
T d1ji0a_         151 GRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQE-GTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN  229 (240)
T ss_dssp             HHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHT-TCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred             HHHHHhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHhcC
Confidence            99999999999999999999999999999999998754 99999999999999999999999999999999999999765


Q ss_pred             h
Q 022663          242 R  242 (294)
Q Consensus       242 ~  242 (294)
                      +
T Consensus       230 ~  230 (240)
T d1ji0a_         230 E  230 (240)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=8.2e-56  Score=382.61  Aligned_cols=214  Identities=23%  Similarity=0.308  Sum_probs=169.6

Q ss_pred             cEEEcceEEEcCCCCC-CCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663           13 SIKVCGMQFSYEGNDK-PPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG   91 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~-~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~   91 (294)
                      ||+++||+|+|+.... ..+|+||||+|++||+++|+||||||||||+++|+|++.|+ +|.+.++|.+........   
T Consensus         1 mI~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~-sG~I~~~g~~i~~~~~~~---   76 (230)
T d1l2ta_           1 MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT-EGEVYIDNIKTNDLDDDE---   76 (230)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS-EEEEEETTEECTTCCHHH---
T ss_pred             CEEEEeEEEEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCC-cceeEECCEEcCcCChhh---
Confidence            5899999999964211 23799999999999999999999999999999999999887 999999997653211100   


Q ss_pred             CcccccccccccccccCc-ccccccccHHH-HhhcC-----CCCc-H---HHHHHHHHHcCCC---cccccccCCHHHHH
Q 022663           92 DLSYLGGSWSKTVGSAGE-IPLQGDFSAEH-MIFGV-----EGSD-P---VRRERLIELLDID---LQWRMHKVSDGQRR  157 (294)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~-----~~~~-~---~~~~~~l~~l~l~---~~~~~~~LSgGqkq  157 (294)
                          .....+..+++++| +.+++.+++.+ +.++.     .... .   +++.++++.+++.   .+++|++|||||||
T Consensus        77 ----~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGqkQ  152 (230)
T d1l2ta_          77 ----LTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQ  152 (230)
T ss_dssp             ----HHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHH
T ss_pred             ----cchhhcceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChhhCCHHHHH
Confidence                00011234566655 44566666654 33321     1222 2   2345667777774   47789999999999


Q ss_pred             HHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccH
Q 022663          158 RVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKL  235 (294)
Q Consensus       158 Rv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~  235 (294)
                      ||+|||||+.+|++|||||||++||+.++..++++|.++.++.|+|||+||||++++ ++||||++|++|+|+++|.+
T Consensus       153 RvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a-~~~drv~~m~~G~Iv~~g~~  229 (230)
T d1l2ta_         153 RVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEVEREEKL  229 (230)
T ss_dssp             HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHH-TTSSEEEEEETTEEEEEEEC
T ss_pred             HHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHHHH-HhCCEEEEEECCEEEEeccC
Confidence            999999999999999999999999999999999999999888899999999999977 69999999999999998764

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=2.3e-55  Score=382.92  Aligned_cols=222  Identities=23%  Similarity=0.327  Sum_probs=180.2

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      +|+++||+++|++   +++|+||||+|++||++||+||||||||||+|+|+|++.|+ +|.+.++|.+......      
T Consensus         2 aI~v~nl~k~yg~---~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~-~G~i~i~G~~i~~~~~------   71 (238)
T d1vpla_           2 AVVVKDLRKRIGK---KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS-SGIVTVFGKNVVEEPH------   71 (238)
T ss_dssp             CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS-EEEEEETTEETTTCHH------
T ss_pred             CEEEEeEEEEECC---EEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CCEEEECcEecccChH------
Confidence            4899999999976   68999999999999999999999999999999999999887 9999999986533211      


Q ss_pred             cccccccccccccccCc-ccccccccHHHHh-h--cCCCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHHH
Q 022663           93 LSYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-F--GVEGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQIC  162 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~--~~~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lA  162 (294)
                            ..+..++++++ ..++..++..++. +  ......    .+..+++++.+++.  .++++.+|||||||||+||
T Consensus        72 ------~~~~~i~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lSgG~~qrv~iA  145 (238)
T d1vpla_          72 ------EVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIA  145 (238)
T ss_dssp             ------HHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHH
T ss_pred             ------HHHhhEeEeeeccccCCCccHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHhhhhhhCCHHHHHHHHHH
Confidence                  11223444443 3345556654432 1  111111    23456677888885  5789999999999999999


Q ss_pred             HHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHHhh
Q 022663          163 MGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDELR  242 (294)
Q Consensus       163 raL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~  242 (294)
                      |||+++|++|||||||+|||+.++.+++++|+++.+ .|+|||++|||++++..+||||++|++|++++.|+++++.+..
T Consensus       146 ~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~-~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~~  224 (238)
T d1vpla_         146 RALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ-EGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERY  224 (238)
T ss_dssp             HHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHHT
T ss_pred             HHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhcc
Confidence            999999999999999999999999999999999865 4999999999999999999999999999999999999998765


Q ss_pred             hhhhhHHHH
Q 022663          243 NSTNLLSVV  251 (294)
Q Consensus       243 ~~~~~~~~~  251 (294)
                      ...++.+.+
T Consensus       225 ~~~~~~~~f  233 (238)
T d1vpla_         225 KAQNIEEVF  233 (238)
T ss_dssp             TCSSHHHHH
T ss_pred             CCchHHHHH
Confidence            555544443

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=6.6e-55  Score=384.03  Aligned_cols=226  Identities=19%  Similarity=0.194  Sum_probs=180.3

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccc--c
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVC--S   90 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~--~   90 (294)
                      .|+++||+|+|++   ..+|+||||+|++||++||+||||||||||+|+|+|+++|+ +|.|.++|.+.........  .
T Consensus         2 ~Lev~nl~k~yg~---~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~-~G~I~~~G~~i~~~~~~~~~~~   77 (258)
T d1b0ua_           2 KLHVIDLHKRYGG---HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS-EGAIIVNGQNINLVRDKDGQLK   77 (258)
T ss_dssp             CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS-EEEEEETTEECCEEECTTSSEE
T ss_pred             eEEEEEEEEEECC---EEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCC-CCCEEECCEEeccCCccchhcc
Confidence            5999999999976   57999999999999999999999999999999999999887 9999999986532111000  0


Q ss_pred             CCcccccccccccccccCc-ccccccccHHHH-hhc---CCCCc----HHHHHHHHHHcCCC---cccccccCCHHHHHH
Q 022663           91 GDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHM-IFG---VEGSD----PVRRERLIELLDID---LQWRMHKVSDGQRRR  158 (294)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~---~~~~~----~~~~~~~l~~l~l~---~~~~~~~LSgGqkqR  158 (294)
                      ..-......+++.+++++| +.+++.++..+. .++   .....    .++..++++.+++.   .++++.+||||||||
T Consensus        78 ~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~LSGG~~QR  157 (258)
T d1b0ua_          78 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQR  157 (258)
T ss_dssp             ESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHH
T ss_pred             cccHhHHHHHhcceEEEEechhhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCcccccHHHHHH
Confidence            0000000123345666665 445666665443 332   12222    23456788888885   367899999999999


Q ss_pred             HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663          159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL  238 (294)
Q Consensus       159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~  238 (294)
                      |+|||||+.+|++|||||||+|||+.++.+++++|+++.+ .|.|||+||||++++..+||||++|++|+|++.|+++++
T Consensus       158 v~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~-~g~til~vtHdl~~~~~~adri~vm~~G~iv~~g~~~ev  236 (258)
T d1b0ua_         158 VSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE-EGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQV  236 (258)
T ss_dssp             HHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH-TTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred             HHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcc-cCCceEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence            9999999999999999999999999999999999999875 599999999999999999999999999999999999999


Q ss_pred             HHhhh
Q 022663          239 DELRN  243 (294)
Q Consensus       239 ~~~~~  243 (294)
                      +..+.
T Consensus       237 ~~~P~  241 (258)
T d1b0ua_         237 FGNPQ  241 (258)
T ss_dssp             HHSCC
T ss_pred             HhCCC
Confidence            87654

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=8.5e-55  Score=383.29  Aligned_cols=216  Identities=16%  Similarity=0.237  Sum_probs=173.9

Q ss_pred             cccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCccccccccccc
Q 022663           11 LNSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCS   90 (294)
Q Consensus        11 ~~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~   90 (294)
                      |.+|+++||+++|++   ..+|+||||+|++||++||+||||||||||+|+|+|++.|+ +|.|.++|.+........  
T Consensus         2 M~iL~v~nlsk~yg~---~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~-~G~I~~~g~~i~~~~~~~--   75 (254)
T d1g6ha_           2 MEILRTENIVKYFGE---FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD-EGRVYFENKDITNKEPAE--   75 (254)
T ss_dssp             CEEEEEEEEEEEETT---EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS-EEEEEETTEECTTCCHHH--
T ss_pred             cceEEEEEEEEEECC---eEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCC-CcEEEECCEeccchhHHH--
Confidence            458999999999976   57999999999999999999999999999999999999887 999999998653211100  


Q ss_pred             CCcccccccccccccccCc-ccccccccHHHHh-hcC--------------C--CCcH---HHHHHHHHHcCCC--cccc
Q 022663           91 GDLSYLGGSWSKTVGSAGE-IPLQGDFSAEHMI-FGV--------------E--GSDP---VRRERLIELLDID--LQWR  147 (294)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~--------------~--~~~~---~~~~~~l~~l~l~--~~~~  147 (294)
                              ..+..++++++ ..+++.++..+++ ++.              .  ....   ++..++++.+++.  .+++
T Consensus        76 --------~~~~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~  147 (254)
T d1g6ha_          76 --------LYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRK  147 (254)
T ss_dssp             --------HHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSB
T ss_pred             --------HHHhcCCccCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCc
Confidence                    01112334443 2344555554432 211              0  1111   2345677778875  5788


Q ss_pred             cccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCC
Q 022663          148 MHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDG  227 (294)
Q Consensus       148 ~~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G  227 (294)
                      +++|||||||||+|||||+.+|++|||||||+|||+.++.+++++|.++++ .|+|||+||||++++.++||||++|++|
T Consensus       148 ~~~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~-~g~til~vsHdl~~~~~~~Drv~vm~~G  226 (254)
T d1g6ha_         148 AGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA-KGITFLIIEHRLDIVLNYIDHLYVMFNG  226 (254)
T ss_dssp             GGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECSCCSTTGGGCSEEEEEETT
T ss_pred             hhhCCcHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCcHHHHHHhCCEEEEEeCC
Confidence            999999999999999999999999999999999999999999999999864 5999999999999999999999999999


Q ss_pred             eEEecccHHHHHHh
Q 022663          228 ELRRAEKLAELDEL  241 (294)
Q Consensus       228 ~i~~~g~~~~~~~~  241 (294)
                      +++..|+++++.+.
T Consensus       227 ~iv~~g~~~e~~~~  240 (254)
T d1g6ha_         227 QIIAEGRGEEEIKN  240 (254)
T ss_dssp             EEEEEEESHHHHHH
T ss_pred             EEEEEecHHHHhhc
Confidence            99999999887653

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6e-53  Score=370.46  Aligned_cols=218  Identities=20%  Similarity=0.306  Sum_probs=171.5

Q ss_pred             ccEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccC
Q 022663           12 NSIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSG   91 (294)
Q Consensus        12 ~~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~   91 (294)
                      ..|+++||+|+|++..+..+|+||||+|++||++||+||||||||||+++|+|++.|+ +|.|.++|.+.....      
T Consensus        10 g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~-~G~I~i~g~~i~~~~------   82 (251)
T d1jj7a_          10 GLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT-GGQLLLDGKPLPQYE------   82 (251)
T ss_dssp             CCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS-EEEEEETTEEGGGBC------
T ss_pred             ceEEEEEEEEECCCCCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCC-cCEEEECCEecchhh------
Confidence            3699999999997533456999999999999999999999999999999999999987 999999998653211      


Q ss_pred             CcccccccccccccccCcc-cccccccHHHHhhcCCC-CcHHHHH---------HHHHHcC--C--CcccccccCCHHHH
Q 022663           92 DLSYLGGSWSKTVGSAGEI-PLQGDFSAEHMIFGVEG-SDPVRRE---------RLIELLD--I--DLQWRMHKVSDGQR  156 (294)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~---------~~l~~l~--l--~~~~~~~~LSgGqk  156 (294)
                           ...+++.++++++. .+++....+++.++... .......         ..++.+.  +  ..++.+.+||||||
T Consensus        83 -----~~~~r~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqk  157 (251)
T d1jj7a_          83 -----HRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQR  157 (251)
T ss_dssp             -----HHHHHHHEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHH
T ss_pred             -----hHHHHHHhhhccccccccCcchhhhhhhhhcccchHHHHHHHHHHHHHHHHHHhccccchhhHhccCccCChhHc
Confidence                 11234456666653 34444334555555432 2221111         1222232  1  13567789999999


Q ss_pred             HHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHH
Q 022663          157 RRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLA  236 (294)
Q Consensus       157 qRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~  236 (294)
                      |||+|||||+++|+||||||||++||+.++..+++.|.++.++.++|||+||||++.+. .||||++|++|+|++.|+++
T Consensus       158 QRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~-~aDrI~vl~~G~iv~~Gt~~  236 (251)
T d1jj7a_         158 QAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVE-QADHILFLEGGAIREGGTHQ  236 (251)
T ss_dssp             HHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHH-TCSEEEEEETTEEEEEECHH
T ss_pred             eEEEEeeccccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEECCHH
Confidence            99999999999999999999999999999999999999887767899999999999875 69999999999999999999


Q ss_pred             HHHHhh
Q 022663          237 ELDELR  242 (294)
Q Consensus       237 ~~~~~~  242 (294)
                      ++++..
T Consensus       237 eLl~~~  242 (251)
T d1jj7a_         237 QLMEKK  242 (251)
T ss_dssp             HHHHHT
T ss_pred             HHHhCC
Confidence            998753

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=1.2e-52  Score=363.74  Aligned_cols=209  Identities=22%  Similarity=0.301  Sum_probs=175.3

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      .|++ ++.++|++   . -+ ||||++. +|+++|+||||||||||+|+|+|++.|+ +|.+.++|.+.....       
T Consensus         2 ~l~v-~~~k~~g~---~-~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~-~G~I~~~G~~i~~~~-------   66 (240)
T d2onka1           2 FLKV-RAEKRLGN---F-RL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPD-RGEVRLNGADITPLP-------   66 (240)
T ss_dssp             CEEE-EEEEEETT---E-EE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCS-EEEEEETTEECTTSC-------
T ss_pred             EEEE-EEEEEECC---E-EE-EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCC-ceEEEECCEECCcCC-------
Confidence            4788 67899975   2 34 8999995 6899999999999999999999999887 999999998653211       


Q ss_pred             cccccccccccccccCc-ccccccccHHH-HhhcCCCCc----HHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHH
Q 022663           93 LSYLGGSWSKTVGSAGE-IPLQGDFSAEH-MIFGVEGSD----PVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMG  164 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAra  164 (294)
                            ..++.+++++| ..+++.+++.+ +.++.....    .+++.++++.+++.  .++++.+|||||||||+||||
T Consensus        67 ------~~~r~ig~v~Q~~~l~~~ltV~enl~~~l~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~LSGG~kQRvaiAra  140 (240)
T d2onka1          67 ------PERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARA  140 (240)
T ss_dssp             ------TTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHH
T ss_pred             ------HHHcCceeeccchhhcccchhhHhhhhhhcccCHHHHHHHHHHHHHhcCcHhhhhCChhhCCHHHHHHHHHHHH
Confidence                  11234566655 45666777654 456554332    23567788888886  689999999999999999999


Q ss_pred             HccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHHhh
Q 022663          165 LLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDELR  242 (294)
Q Consensus       165 L~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~  242 (294)
                      |+.+|++|||||||+|||+.++..+++.|++++++.|.|||+||||++++.++||||++|++|++++.|+++++.+.+
T Consensus       141 l~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~~  218 (240)
T d2onka1         141 LVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAK  218 (240)
T ss_dssp             HTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred             HhccCCceEecCccccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEecHHHHhcCC
Confidence            999999999999999999999999999999998888999999999999999999999999999999999999998654

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=100.00  E-value=3.9e-53  Score=369.77  Aligned_cols=212  Identities=21%  Similarity=0.317  Sum_probs=167.4

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      ||+++||+|+|++  .+++|+||||+|++||++||+||||||||||+++|+|++.|+ +|.|.++|.+.....       
T Consensus         1 mle~knvsf~Y~~--~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~-~G~I~i~g~~i~~~~-------   70 (242)
T d1mv5a_           1 MLSARHVDFAYDD--SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT-AGEITIDGQPIDNIS-------   70 (242)
T ss_dssp             CEEEEEEEECSSS--SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCS-BSCEEETTEESTTTS-------
T ss_pred             CEEEEEEEEECCC--CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCC-CCEEEECCEEecccc-------
Confidence            5899999999975  357999999999999999999999999999999999999887 999999997653211       


Q ss_pred             cccccccccccccccCcc-cccccccHHHHhhcCCC-CcHHHHHHHHHHcCCC-------------cccccccCCHHHHH
Q 022663           93 LSYLGGSWSKTVGSAGEI-PLQGDFSAEHMIFGVEG-SDPVRRERLIELLDID-------------LQWRMHKVSDGQRR  157 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~l~l~-------------~~~~~~~LSgGqkq  157 (294)
                          ...++..++++++. .++.....+++.++... .........++...+.             ....+.+|||||||
T Consensus        71 ----~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQ  146 (242)
T d1mv5a_          71 ----LENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQ  146 (242)
T ss_dssp             ----CSCCTTTCCEECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHH
T ss_pred             ----HHHHHhheEEEccccccCCcchhhheecccccccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHH
Confidence                12234455666553 34444333444444322 2333334444433221             12345679999999


Q ss_pred             HHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHH
Q 022663          158 RVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAE  237 (294)
Q Consensus       158 Rv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~  237 (294)
                      ||+|||||+.+|+||||||||++||+.++..+++.|.++.  .++|||+||||++.+. .||||++|++|+|++.|++++
T Consensus       147 Rv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~--~~~Tvi~itH~l~~~~-~~D~i~vl~~G~iv~~G~~~e  223 (242)
T d1mv5a_         147 RLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM--KGRTTLVIAHRLSTIV-DADKIYFIEKGQITGSGKHNE  223 (242)
T ss_dssp             HHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH--TTSEEEEECCSHHHHH-HCSEEEEEETTEECCCSCHHH
T ss_pred             HHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHc--CCCEEEEEECCHHHHH-hCCEEEEEECCEEEEECCHHH
Confidence            9999999999999999999999999999999999999875  3899999999999886 599999999999999999999


Q ss_pred             HHHh
Q 022663          238 LDEL  241 (294)
Q Consensus       238 ~~~~  241 (294)
                      +++.
T Consensus       224 Ll~~  227 (242)
T d1mv5a_         224 LVAT  227 (242)
T ss_dssp             HHHH
T ss_pred             HHhC
Confidence            9865

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.4e-52  Score=365.62  Aligned_cols=213  Identities=22%  Similarity=0.290  Sum_probs=169.7

Q ss_pred             EEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCCc
Q 022663           14 IKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDL   93 (294)
Q Consensus        14 l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~~   93 (294)
                      |+++||+|+|++. .+++|+||||+|++||++||+||||||||||+++|+|++.|. +|.|.++|.+.....        
T Consensus         2 I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~-~G~I~i~g~~i~~~~--------   71 (241)
T d2pmka1           2 ITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE-NGQVLIDGHDLALAD--------   71 (241)
T ss_dssp             EEEEEEEEESSTT-SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS-EEEEEETTEETTTSC--------
T ss_pred             eEEEEEEEEeCCC-CcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCC-CCEEEECCEEecccc--------
Confidence            7899999999642 357999999999999999999999999999999999999886 999999997653211        


Q ss_pred             ccccccccccccccCcc-cccccccHHHHhhcCCCCcHHHHHHHHHHcCC---------C----cccccccCCHHHHHHH
Q 022663           94 SYLGGSWSKTVGSAGEI-PLQGDFSAEHMIFGVEGSDPVRRERLIELLDI---------D----LQWRMHKVSDGQRRRV  159 (294)
Q Consensus        94 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l---------~----~~~~~~~LSgGqkqRv  159 (294)
                         ...+++.++++++. .++.....+++.++......+....+++..++         .    ....+..|||||||||
T Consensus        72 ---~~~lr~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRv  148 (241)
T d2pmka1          72 ---PNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRI  148 (241)
T ss_dssp             ---HHHHHHHEEEECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHH
T ss_pred             ---hhhhhceEEEEecccccCCccccccccccCccccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHH
Confidence               11234456666653 34444334455455444444444444443322         1    2445679999999999


Q ss_pred             HHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHH
Q 022663          160 QICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELD  239 (294)
Q Consensus       160 ~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  239 (294)
                      +|||||+.+|+||||||||++||+.+...+++.|.++.  .++|||+|||+++.+. .||||++|++|+|++.|++++++
T Consensus       149 alARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~--~~~Tvi~itH~l~~~~-~~D~i~vl~~G~Iv~~G~~~ell  225 (241)
T d2pmka1         149 AIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC--KGRTVIIIAHRLSTVK-NADRIIVMEKGKIVEQGKHKELL  225 (241)
T ss_dssp             HHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH--TTSEEEEECSSGGGGT-TSSEEEEEETTEEEEEECHHHHH
T ss_pred             hhhhhhhcccchhhhhCCccccCHHHHHHHHHHHHHHh--CCCEEEEEECCHHHHH-hCCEEEEEECCEEEEECCHHHHH
Confidence            99999999999999999999999999999999999875  3899999999999875 69999999999999999999998


Q ss_pred             Hhh
Q 022663          240 ELR  242 (294)
Q Consensus       240 ~~~  242 (294)
                      +..
T Consensus       226 ~~~  228 (241)
T d2pmka1         226 SEP  228 (241)
T ss_dssp             HST
T ss_pred             hCC
Confidence            754

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=5.4e-52  Score=364.77  Aligned_cols=214  Identities=22%  Similarity=0.300  Sum_probs=170.4

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      .|+++||+|+|++. ..++|+||||+|++||++||+||||||||||+++|+|++.|+ +|.|.++|.+......      
T Consensus        13 ~I~~~nvsf~Y~~~-~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~-~G~I~i~g~~i~~~~~------   84 (253)
T d3b60a1          13 DLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID-EGHILMDGHDLREYTL------   84 (253)
T ss_dssp             CEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCS-EEEEEETTEETTTBCH------
T ss_pred             EEEEEEEEEEeCCC-CCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCC-ccEEEECCcccchhhh------
Confidence            59999999999753 357999999999999999999999999999999999999887 8999999976532111      


Q ss_pred             cccccccccccccccCc-ccccccccHHHHhhcC-CCCcHHHHHHHHHHcCC-----------C--cccccccCCHHHHH
Q 022663           93 LSYLGGSWSKTVGSAGE-IPLQGDFSAEHMIFGV-EGSDPVRRERLIELLDI-----------D--LQWRMHKVSDGQRR  157 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~l~l-----------~--~~~~~~~LSgGqkq  157 (294)
                           ..++..++++++ ..++.....+++.++. .....+...++++..++           +  ..+++.+|||||||
T Consensus        85 -----~~~r~~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQ  159 (253)
T d3b60a1          85 -----ASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQ  159 (253)
T ss_dssp             -----HHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHH
T ss_pred             -----hhhhheEEEEeeccccCCcchhhhhhhcCcccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHH
Confidence                 123344555555 3344444455555543 23344444444433321           1  34567789999999


Q ss_pred             HHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHH
Q 022663          158 RVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAE  237 (294)
Q Consensus       158 Rv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~  237 (294)
                      ||+|||||+.+|+||||||||++||+.++..+++.|.++.+  ++|||+||||++.+. .||+|++|++|+|++.|++++
T Consensus       160 RvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~--~~Tvi~itH~l~~~~-~~D~v~vl~~G~Iv~~G~~~e  236 (253)
T d3b60a1         160 RIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK--NRTSLVIAHRLSTIE-QADEIVVVEDGIIVERGTHSE  236 (253)
T ss_dssp             HHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT--TSEEEEECSCGGGTT-TCSEEEEEETTEEEEEECHHH
T ss_pred             HHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHHHHHhcc--CCEEEEEECCHHHHH-hCCEEEEEECCEEEEECCHHH
Confidence            99999999999999999999999999999999999998753  799999999999875 699999999999999999999


Q ss_pred             HHHhh
Q 022663          238 LDELR  242 (294)
Q Consensus       238 ~~~~~  242 (294)
                      +++..
T Consensus       237 Ll~~~  241 (253)
T d3b60a1         237 LLAQH  241 (253)
T ss_dssp             HHHHT
T ss_pred             HHhCC
Confidence            98753

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=100.00  E-value=2.2e-51  Score=360.60  Aligned_cols=214  Identities=22%  Similarity=0.310  Sum_probs=172.2

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      .|+++||+|+|++. .+++|+||||+|++||++||+||||||||||+++|+|++.|+ +|.+.++|.+.....       
T Consensus        16 ~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~-~G~I~i~g~~i~~~~-------   86 (255)
T d2hyda1          16 RIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT-SGQILIDGHNIKDFL-------   86 (255)
T ss_dssp             CEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCS-EEEEEETTEEGGGSC-------
T ss_pred             EEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCcc-ccccccCCEEcccCC-------
Confidence            49999999999753 357999999999999999999999999999999999999887 999999987653211       


Q ss_pred             cccccccccccccccCcc-cccccccHHHHhhcCCCCcHHHHHHHHHHcCCC-------------cccccccCCHHHHHH
Q 022663           93 LSYLGGSWSKTVGSAGEI-PLQGDFSAEHMIFGVEGSDPVRRERLIELLDID-------------LQWRMHKVSDGQRRR  158 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------------~~~~~~~LSgGqkqR  158 (294)
                          ...++..++++++. .++.....+++.++......+...++++..++.             ....+.+||||||||
T Consensus        87 ----~~~lr~~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QR  162 (255)
T d2hyda1          87 ----TGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQR  162 (255)
T ss_dssp             ----HHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHH
T ss_pred             ----HHHhhheeeeeeccccCCCCCHHHHHhccCcCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHH
Confidence                11234456666653 344443345555665444455555566555431             234556899999999


Q ss_pred             HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHH
Q 022663          159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL  238 (294)
Q Consensus       159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~  238 (294)
                      ++|||||+.+|+||||||||++||+.++..+++.|.++.  .++|+|+||||++.+. .||||++|++|+|++.|+++++
T Consensus       163 i~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~--~~~TvI~itH~~~~~~-~~D~ii~l~~G~iv~~G~~~eL  239 (255)
T d2hyda1         163 LSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS--KDRTTLIVAHRLSTIT-HADKIVVIENGHIVETGTHREL  239 (255)
T ss_dssp             HHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT--TTSEEEEECSSGGGTT-TCSEEEEEETTEEEEEECHHHH
T ss_pred             HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEECCHHHH
Confidence            999999999999999999999999999999999998874  3789999999999875 6999999999999999999999


Q ss_pred             HHhh
Q 022663          239 DELR  242 (294)
Q Consensus       239 ~~~~  242 (294)
                      ++..
T Consensus       240 l~~~  243 (255)
T d2hyda1         240 IAKQ  243 (255)
T ss_dssp             HHTT
T ss_pred             HhCC
Confidence            8753

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.1e-49  Score=345.94  Aligned_cols=210  Identities=20%  Similarity=0.235  Sum_probs=164.4

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      +|+++||+++|       +|++|||+|++||++||+||||||||||+++|+|+. + ++|.+.++|.+.......     
T Consensus         3 il~~~dv~~~~-------~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~-~~G~I~~~g~~i~~~~~~-----   68 (231)
T d1l7vc_           3 VMQLQDVAEST-------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-S-GKGSIQFAGQPLEAWSAT-----   68 (231)
T ss_dssp             EEEEEEECCTT-------TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-C-CSSEEEESSSBGGGSCHH-----
T ss_pred             EEEEECcccCc-------eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-C-CceEEEECCEECCcCCHH-----
Confidence            68999997644       589999999999999999999999999999999975 4 489999999864321110     


Q ss_pred             cccccccccccccccCc-ccccccccHHHH-hhcC-CCCcHHHHHHHHHHcCCC--cccccccCCHHHHHHHHHHHHHcc
Q 022663           93 LSYLGGSWSKTVGSAGE-IPLQGDFSAEHM-IFGV-EGSDPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMGLLH  167 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~-~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqkqRv~lAraL~~  167 (294)
                            .......+..+ .......+..++ .++. .....+...++++.+++.  .++++.+|||||||||+|||||++
T Consensus        69 ------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSgG~~Qrv~iA~al~~  142 (231)
T d1l7vc_          69 ------KLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQ  142 (231)
T ss_dssp             ------HHHHHEEEECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHH
T ss_pred             ------HHHhhceeeeccccCCccccHHHHhhhccchhhHHHHHHHHHHhcCCHhHhCcChhhcCHHHHHHHHHHHHHHh
Confidence                  00111111111 111112233332 2222 223455667888888885  678999999999999999999997


Q ss_pred             -------CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHHH
Q 022663          168 -------PFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDE  240 (294)
Q Consensus       168 -------~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  240 (294)
                             +|+||||||||+|||+.++..++++|+++++ .|.|||+||||++++.++||||++|++|++++.|+++++++
T Consensus       143 ~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~-~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~~  221 (231)
T d1l7vc_         143 ITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQ-QGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT  221 (231)
T ss_dssp             HCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHH-TTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHSC
T ss_pred             hCcccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEECCHHHHhC
Confidence                   7799999999999999999999999999865 59999999999999999999999999999999999999976


Q ss_pred             hhh
Q 022663          241 LRN  243 (294)
Q Consensus       241 ~~~  243 (294)
                      ...
T Consensus       222 ~~~  224 (231)
T d1l7vc_         222 PPN  224 (231)
T ss_dssp             HHH
T ss_pred             ChH
Confidence            543

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=100.00  E-value=3.2e-46  Score=317.40  Aligned_cols=189  Identities=21%  Similarity=0.335  Sum_probs=148.5

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      .|+++||+++|+    +++|+||||+|++||+++|+||||||||||+|+|+|+++|+ +|.+.++|.+....     .+.
T Consensus         2 ~lev~~ls~~y~----~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~-~G~I~~~g~~i~~~-----~~~   71 (200)
T d1sgwa_           2 KLEIRDLSVGYD----KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL-KGEIIYNGVPITKV-----KGK   71 (200)
T ss_dssp             EEEEEEEEEESS----SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCS-EEEEEETTEEGGGG-----GGG
T ss_pred             eEEEEEEEEEeC----CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccC-CCEEEECCEehhHh-----cCc
Confidence            589999999995    36999999999999999999999999999999999999987 99999988764321     112


Q ss_pred             cccccccccccccccCcccccccccHHHHh------hcCCCCcHHHHHHHHHHcCC-CcccccccCCHHHHHHHHHHHHH
Q 022663           93 LSYLGGSWSKTVGSAGEIPLQGDFSAEHMI------FGVEGSDPVRRERLIELLDI-DLQWRMHKVSDGQRRRVQICMGL  165 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~l~l-~~~~~~~~LSgGqkqRv~lAraL  165 (294)
                      +.+.++.          ..++..++.++++      ++. ......+.++++.+++ +.++++++|||||||||+|||||
T Consensus        72 i~~~~~~----------~~~~~~~t~~~~l~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~LSgG~~qrv~ia~al  140 (200)
T d1sgwa_          72 IFFLPEE----------IIVPRKISVEDYLKAVASLYGV-KVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTL  140 (200)
T ss_dssp             EEEECSS----------CCCCTTSBHHHHHHHHHHHTTC-CCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHT
T ss_pred             EEEEeec----------ccCCCCcCHHHHHHHHHHhcCC-ccCHHHHHHHHHHcCCcccccccCcCCCcHHHHHHHHHHH
Confidence            2222211          1223344444432      121 2334455667777776 36778999999999999999999


Q ss_pred             ccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeC
Q 022663          166 LHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQD  226 (294)
Q Consensus       166 ~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~  226 (294)
                      +.+|++|||||||+|||+.++.++++.|.++.++.+.+||.++|++.    +||++.+|++
T Consensus       141 ~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~l~----~~D~~~~l~~  197 (200)
T d1sgwa_         141 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELS----YCDVNENLHK  197 (200)
T ss_dssp             TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCT----TSSEEEEGGG
T ss_pred             hcCCCEEEEcCcccccCHHHHHHHHHHHHHHHhCCCEEEEEEechhh----hcchhhheee
Confidence            99999999999999999999999999999998877777777777753    7999998864

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.6e-47  Score=338.05  Aligned_cols=197  Identities=22%  Similarity=0.314  Sum_probs=146.2

Q ss_pred             cEEEcceEEEcCCCCCCCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCCcccccccccccCC
Q 022663           13 SIKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGD   92 (294)
Q Consensus        13 ~l~~~~ls~~y~~~~~~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~~~~~~~~~~~~~~   92 (294)
                      .|+++|+++  .+   ++||+||||+|++||++||+||||||||||+++|+|++.|+ +|.+.++|+.            
T Consensus        38 ~i~~~~~~~--~g---~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~-~G~I~~~g~i------------   99 (281)
T d1r0wa_          38 NVSFSHLCL--VG---NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS-EGIIKHSGRV------------   99 (281)
T ss_dssp             --CHHHHHH--TT---CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCS-EEEEECCSCE------------
T ss_pred             cEEEEEcCC--CC---CeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCC-CcEEEECCEE------------
Confidence            355555543  33   57999999999999999999999999999999999999887 8888877642            


Q ss_pred             cccccccccccccccCcccccccccHHHHhhcCCCCcHHHHHHHHHHcCC-------C------cccccccCCHHHHHHH
Q 022663           93 LSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDI-------D------LQWRMHKVSDGQRRRV  159 (294)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l-------~------~~~~~~~LSgGqkqRv  159 (294)
                       .+.+|.          ..+++....+++.++.. .+......+++...+       .      ..+.+.+|||||||||
T Consensus       100 -~~v~Q~----------~~l~~~tv~eni~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv  167 (281)
T d1r0wa_         100 -SFCSQF----------SWIMPGTIKENIIFGVS-YDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARI  167 (281)
T ss_dssp             -EEECSS----------CCCCSEEHHHHHTTTSC-CCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHH
T ss_pred             -EEEecc----------ccccCceeecccccccc-ccchHHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHH
Confidence             222221          11222222344444432 222333333333221       1      2345568999999999


Q ss_pred             HHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCeEEecccHHHHH
Q 022663          160 QICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELD  239 (294)
Q Consensus       160 ~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  239 (294)
                      +|||||+++|+||||||||++||+.++..+++.+.... ..++|+|+|||+++.+ +.||||++|++|+|++.|+++++.
T Consensus       168 ~lARaL~~~p~illLDEPts~LD~~~~~~i~~~~~~~~-~~~~tvi~itH~~~~l-~~aDrI~vl~~G~i~~~Gt~~eL~  245 (281)
T d1r0wa_         168 SLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKL-MANKTRILVTSKMEHL-RKADKILILHQGSSYFYGTFSELQ  245 (281)
T ss_dssp             HHHHHHHSCCSEEEEESCCCSSCHHHHHHHHHHCCCCC-TTTSEEEEECSCHHHH-HTCSEEEEEETTEEEEEECHHHHH
T ss_pred             HHHHHHHhCccchhhcCccccCCHHHHHHHHHHHHHHh-hCCCEEEEEechHHHH-HhCCEEEEEECCEEEEECCHHHHh
Confidence            99999999999999999999999999999987643332 2478999999999876 579999999999999999999987


Q ss_pred             Hh
Q 022663          240 EL  241 (294)
Q Consensus       240 ~~  241 (294)
                      ..
T Consensus       246 ~~  247 (281)
T d1r0wa_         246 SL  247 (281)
T ss_dssp             HH
T ss_pred             cc
Confidence            53

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.79  E-value=2.1e-20  Score=152.98  Aligned_cols=82  Identities=12%  Similarity=0.030  Sum_probs=66.7

Q ss_pred             ccCCHHHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEEeeCCe
Q 022663          149 HKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGE  228 (294)
Q Consensus       149 ~~LSgGqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~l~~G~  228 (294)
                      .++|+|+++|.++++++..+|++|++|||....  .....+.+.+.+..++.+.++|+++|+... ..+|+++..+.+|+
T Consensus        80 ~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~--~~~~~~~~~l~~~l~~~~~~il~~~h~~~~-~~~~~~i~~~~~~~  156 (178)
T d1ye8a1          80 FEELAIPILERAYREAKKDRRKVIIIDEIGKME--LFSKKFRDLVRQIMHDPNVNVVATIPIRDV-HPLVKEIRRLPGAV  156 (178)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTG--GGCHHHHHHHHHHHTCTTSEEEEECCSSCC-SHHHHHHHTCTTCE
T ss_pred             hhhhhhhhHHHHHHHHHhcCCCceeecCCCccc--hhhHHHHHHHHHHhccCCCEEEEEEccHHH-HHhhceEEEEeCCE
Confidence            468999999999999999999999999985443  334556666666666668999999999764 56899999999999


Q ss_pred             EEecc
Q 022663          229 LRRAE  233 (294)
Q Consensus       229 i~~~g  233 (294)
                      ++..+
T Consensus       157 i~~v~  161 (178)
T d1ye8a1         157 LIELT  161 (178)
T ss_dssp             EEECC
T ss_pred             EEEEC
Confidence            98754

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.14  E-value=5.7e-11  Score=108.21  Aligned_cols=75  Identities=15%  Similarity=0.256  Sum_probs=62.5

Q ss_pred             cccCCHHHHHHHHHHHHH----ccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEEE
Q 022663          148 MHKVSDGQRRRVQICMGL----LHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAY  223 (294)
Q Consensus       148 ~~~LSgGqkqRv~lAraL----~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~~  223 (294)
                      ...||||||.+++||..+    ..++++++||||+++||+..+..+.++|.++. ..+.-+|++||++..+. .||+++.
T Consensus       330 ~~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~-~~~~Q~I~iTH~~~~~~-~ad~~~~  407 (427)
T d1w1wa_         330 MEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHR-NPDLQFIVISLKNTMFE-KSDALVG  407 (427)
T ss_dssp             GGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHC-BTTBEEEEECSCHHHHT-TCSEEEE
T ss_pred             hhhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCCEEEEEeCCHHHHH-hcccEEE
Confidence            367899999998887654    46778999999999999999999999998764 33567999999998665 6899876


Q ss_pred             e
Q 022663          224 I  224 (294)
Q Consensus       224 l  224 (294)
                      +
T Consensus       408 V  408 (427)
T d1w1wa_         408 V  408 (427)
T ss_dssp             E
T ss_pred             E
Confidence            5

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.95  E-value=7.9e-09  Score=86.98  Aligned_cols=62  Identities=18%  Similarity=0.235  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHH
Q 022663          154 GQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLE  215 (294)
Q Consensus       154 GqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~  215 (294)
                      .|-+++.-+.-.+.+..++|+||+..|=|+.....+...+.+...+.+..++++||..++..
T Consensus       100 ~el~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~  161 (224)
T d1ewqa2         100 VEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA  161 (224)
T ss_dssp             HHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred             HhHHHHHHHhccCCCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeechhhhh
Confidence            44445544444567778999999999999988887776666665667889999999987654

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.82  E-value=2.6e-08  Score=84.32  Aligned_cols=62  Identities=16%  Similarity=0.166  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHH-HHHHHHhcCcEEEEEeCChhHHH
Q 022663          154 GQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDF-FKDECEQRGATIVYATHIFDGLE  215 (294)
Q Consensus       154 GqkqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~-l~~~~~~~g~tviivsHd~~~~~  215 (294)
                      .|.+|+.-+.--+.+..++|+||+..|=++.....+... +..+..+.+..+|++||..+...
T Consensus       106 ~E~~~~~~il~~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~~  168 (234)
T d1wb9a2         106 VEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQ  168 (234)
T ss_dssp             HHHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGG
T ss_pred             HHHHHHHHHHHhcccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchHHHhh
Confidence            334444433334667789999999999999998887655 44454444567899999876543

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.60  E-value=7.5e-08  Score=83.71  Aligned_cols=78  Identities=21%  Similarity=0.288  Sum_probs=64.9

Q ss_pred             ccccCCHHHHHHHHHHHHH----ccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhceEE
Q 022663          147 RMHKVSDGQRRRVQICMGL----LHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLA  222 (294)
Q Consensus       147 ~~~~LSgGqkqRv~lAraL----~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~v~  222 (294)
                      ....+|+|||+...++..+    ...|.++++|||-++|+|.....+.+.|++..+  +.-||++||.+.++. .+|+++
T Consensus       216 ~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~--~~QviitTHsp~~~~-~~d~~~  292 (308)
T d1e69a_         216 KLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK--HTQFIVITHNKIVME-AADLLH  292 (308)
T ss_dssp             BGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT--TSEEEEECCCTTGGG-GCSEEE
T ss_pred             hhhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhcc--CCEEEEEECCHHHHH-hcccEE
Confidence            3568999999998776653    457799999999999999999999999988753  578999999999876 579886


Q ss_pred             E--eeCC
Q 022663          223 Y--IQDG  227 (294)
Q Consensus       223 ~--l~~G  227 (294)
                      .  +.+|
T Consensus       293 ~v~~~~g  299 (308)
T d1e69a_         293 GVTMVNG  299 (308)
T ss_dssp             EEEESSS
T ss_pred             EEEEeCC
Confidence            5  4555

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=98.00  E-value=9.5e-05  Score=62.38  Aligned_cols=46  Identities=13%  Similarity=0.239  Sum_probs=35.6

Q ss_pred             HccCCCEEEeeCCCC-----CCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q 022663          165 LLHPFKVLLLDEITV-----DLDVVARMDLLDFFKDECEQRGATIVYATHI  210 (294)
Q Consensus       165 L~~~p~iLlLDEPt~-----gLD~~~~~~l~~~l~~~~~~~g~tviivsHd  210 (294)
                      ...+|+++++|--++     --|......++..|..+++..+++||++.|-
T Consensus       129 ~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~v~H~  179 (274)
T d1nlfa_         129 AAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHA  179 (274)
T ss_dssp             HHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred             hccCccEEecCchhhhccccccchhhHHHHHHHHHHHhhcCCCceehhhhc
Confidence            457899999995432     1255666778888888888889999999994

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=97.98  E-value=1.4e-07  Score=75.91  Aligned_cols=32  Identities=25%  Similarity=0.409  Sum_probs=29.0

Q ss_pred             ceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHh
Q 022663           31 LFYDFNLGISPGSRCLLVGANGSGKTTLLKILA   63 (294)
Q Consensus        31 iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~   63 (294)
                      -+++.+|++.+| +++|+|||||||||+|.+|.
T Consensus        14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHH
T ss_pred             CEeeEEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence            368889999887 99999999999999999996

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=97.92  E-value=2.8e-05  Score=66.00  Aligned_cols=35  Identities=26%  Similarity=0.350  Sum_probs=29.1

Q ss_pred             CCceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHh
Q 022663           29 PPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILA   63 (294)
Q Consensus        29 ~~iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~   63 (294)
                      .+-|+++..=+.+|+++.|.|++|+|||||+.-|+
T Consensus        22 ~~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la   56 (277)
T d1cr2a_          22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQA   56 (277)
T ss_dssp             CTTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHH
T ss_pred             chhHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHH
Confidence            34567666558999999999999999999987775

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.79  E-value=6.4e-06  Score=71.03  Aligned_cols=27  Identities=33%  Similarity=0.610  Sum_probs=22.6

Q ss_pred             eEEEeCCCEEEEECCCCCcHHHHHHHHh
Q 022663           36 NLGISPGSRCLLVGANGSGKTTLLKILA   63 (294)
Q Consensus        36 sl~i~~Ge~~~liG~NGsGKSTLlk~i~   63 (294)
                      .+.+.++ +.+|+|||||||||+|.+|.
T Consensus        19 ~i~f~~~-lnvlvG~NgsGKS~iL~Ai~   45 (308)
T d1e69a_          19 LIGFSDR-VTAIVGPNGSGKSNIIDAIK   45 (308)
T ss_dssp             EEECCSS-EEEEECCTTTCSTHHHHHHH
T ss_pred             EEeCCCC-eEEEECCCCCcHHHHHHHHH
Confidence            3555554 99999999999999999995

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.78  E-value=7e-05  Score=61.96  Aligned_cols=60  Identities=10%  Similarity=0.024  Sum_probs=41.4

Q ss_pred             cCCCEEEeeCCC---CCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCh----------hHHHhhhceEEEeeC
Q 022663          167 HPFKVLLLDEIT---VDLDVVARMDLLDFFKDECEQRGATIVYATHIF----------DGLETWATHLAYIQD  226 (294)
Q Consensus       167 ~~p~iLlLDEPt---~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~----------~~~~~~~d~v~~l~~  226 (294)
                      .+|++++.|--+   .+.+..........|..++++.+.+++++.|-.          ..+..+||-|+.|+.
T Consensus       115 ~~~~~vviDs~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~~  187 (242)
T d1tf7a2         115 FKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQY  187 (242)
T ss_dssp             TCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEE
T ss_pred             cCCceeeeecchhhhcCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeEeeccccccCCcceeeecceEEEEEE
Confidence            578999988643   334566655666666677778899999998742          124567888888753

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.77  E-value=6.1e-06  Score=66.09  Aligned_cols=23  Identities=30%  Similarity=0.553  Sum_probs=21.7

Q ss_pred             CCEEEEECCCCCcHHHHHHHHhC
Q 022663           42 GSRCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        42 Ge~~~liG~NGsGKSTLlk~i~G   64 (294)
                      |.+++|+||||||||||++.|..
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~   24 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRE   24 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHh
Confidence            88999999999999999999975

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=97.76  E-value=0.00038  Score=58.94  Aligned_cols=42  Identities=24%  Similarity=0.293  Sum_probs=28.8

Q ss_pred             EEeCCCEEEEECCCCCcHHHHHHHHhCCcccCCCceEEecCC
Q 022663           38 GISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNR   79 (294)
Q Consensus        38 ~i~~Ge~~~liG~NGsGKSTLlk~i~G~~~~~~~g~i~~~~~   79 (294)
                      =|+.|.++-|.||+|||||||+-.++-...-.+...++++..
T Consensus        50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE   91 (263)
T d1u94a1          50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE   91 (263)
T ss_dssp             SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CccCceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEccc
Confidence            478999999999999999999866654322222334444433

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.76  E-value=6e-06  Score=64.48  Aligned_cols=22  Identities=41%  Similarity=0.428  Sum_probs=20.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      +++|+|++|||||||++.|+..
T Consensus         4 vi~itG~~GSGKTTL~~~L~~~   25 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIPA   25 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            7899999999999999999853

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.64  E-value=1.1e-05  Score=63.37  Aligned_cols=25  Identities=44%  Similarity=0.577  Sum_probs=23.1

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhCC
Q 022663           41 PGSRCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        41 ~Ge~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .|.++.|.||+||||||+.+.|+..
T Consensus         3 ~g~iI~l~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1           3 GGNILLLSGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            5889999999999999999999874

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.60  E-value=1.3e-05  Score=62.60  Aligned_cols=25  Identities=28%  Similarity=0.416  Sum_probs=23.0

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhC
Q 022663           40 SPGSRCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        40 ~~Ge~~~liG~NGsGKSTLlk~i~G   64 (294)
                      +.+.++.|+||+||||||+.+.|+.
T Consensus         4 ~~~~iivl~G~~GsGKsT~a~~La~   28 (171)
T d1knqa_           4 HDHHIYVLMGVSGSGKSAVASEVAH   28 (171)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4678999999999999999999986

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.58  E-value=2e-05  Score=70.52  Aligned_cols=28  Identities=25%  Similarity=0.620  Sum_probs=23.6

Q ss_pred             eEEEeCCCEEEEECCCCCcHHHHHHHHh
Q 022663           36 NLGISPGSRCLLVGANGSGKTTLLKILA   63 (294)
Q Consensus        36 sl~i~~Ge~~~liG~NGsGKSTLlk~i~   63 (294)
                      .+++..+.+++|+|||||||||+|.+|+
T Consensus        19 ~i~f~~~~l~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          19 KVGFGESNFTSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             EEECTTCSEEEEECSTTSSHHHHHHHHH
T ss_pred             EEeCCCCCEEEEECCCCCCHHHHHHHHH
Confidence            4455656699999999999999999984

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.58  E-value=1.5e-05  Score=62.40  Aligned_cols=25  Identities=28%  Similarity=0.388  Sum_probs=22.9

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhC
Q 022663           40 SPGSRCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        40 ~~Ge~~~liG~NGsGKSTLlk~i~G   64 (294)
                      .+|-++.|+|++||||||+.+.|+-
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~   28 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQV   28 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4788999999999999999999984

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.57  E-value=1.9e-05  Score=65.65  Aligned_cols=26  Identities=27%  Similarity=0.463  Sum_probs=24.0

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCc
Q 022663           41 PGSRCLLVGANGSGKTTLLKILAGKH   66 (294)
Q Consensus        41 ~Ge~~~liG~NGsGKSTLlk~i~G~~   66 (294)
                      +|..++++|+||+|||||+|.|.|..
T Consensus        94 ~~kt~~~~G~SGVGKSTLiN~L~~~~  119 (225)
T d1u0la2          94 KGKISTMAGLSGVGKSSLLNAINPGL  119 (225)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred             cCCeEEEECCCCCCHHHHHHhhcchh
Confidence            69999999999999999999999854

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=97.56  E-value=0.00044  Score=58.71  Aligned_cols=28  Identities=32%  Similarity=0.485  Sum_probs=24.6

Q ss_pred             EEeCCCEEEEECCCCCcHHHHHHHHhCC
Q 022663           38 GISPGSRCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        38 ~i~~Ge~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      =|+.|.++-|.||+|||||||.-.++..
T Consensus        53 Gip~g~itei~G~~~sGKT~l~l~~~~~   80 (268)
T d1xp8a1          53 GIPRGRITEIYGPESGGKTTLALAIVAQ   80 (268)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CccCceEEEEecCCccchHHHHHHHHHH
Confidence            4689999999999999999998777653

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.49  E-value=2.8e-05  Score=63.75  Aligned_cols=24  Identities=25%  Similarity=0.559  Sum_probs=21.9

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhC
Q 022663           41 PGSRCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        41 ~Ge~~~liG~NGsGKSTLlk~i~G   64 (294)
                      +|.++.|+||||||||||.+.|.-
T Consensus         1 ~G~livi~GPSG~GK~tl~~~L~~   24 (205)
T d1s96a_           1 QGTLYIVSAPSGAGKSSLIQALLK   24 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHh
Confidence            589999999999999999998864

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=2.4e-05  Score=61.38  Aligned_cols=26  Identities=31%  Similarity=0.409  Sum_probs=22.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhCCcccC
Q 022663           44 RCLLVGANGSGKTTLLKILAGKHMVG   69 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~~~~~   69 (294)
                      .+.|+||+|+|||||++.++..+...
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~~l~~~   28 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASEVLKSS   28 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHHHC
Confidence            58999999999999999999865543

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.47  E-value=2.8e-05  Score=60.93  Aligned_cols=26  Identities=31%  Similarity=0.341  Sum_probs=21.4

Q ss_pred             CEEEEECCCCCcHHHHHHHHhCCccc
Q 022663           43 SRCLLVGANGSGKTTLLKILAGKHMV   68 (294)
Q Consensus        43 e~~~liG~NGsGKSTLlk~i~G~~~~   68 (294)
                      .+++|+|++|||||||++-|...+..
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~L~~   27 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAAAVR   27 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence            47899999999999999888754443

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.47  E-value=3.1e-05  Score=60.49  Aligned_cols=25  Identities=32%  Similarity=0.664  Sum_probs=22.7

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhC
Q 022663           40 SPGSRCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        40 ~~Ge~~~liG~NGsGKSTLlk~i~G   64 (294)
                      ++|-.++|.||+||||||+.+.|+-
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~   27 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAA   27 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHH
Confidence            4677899999999999999999985

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.45  E-value=2.7e-05  Score=61.05  Aligned_cols=22  Identities=32%  Similarity=0.555  Sum_probs=20.2

Q ss_pred             CEEEEECCCCCcHHHHHHHHhC
Q 022663           43 SRCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        43 e~~~liG~NGsGKSTLlk~i~G   64 (294)
                      ..++|+||.|||||||.+.|+-
T Consensus         8 K~I~i~G~~GsGKTTla~~La~   29 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLAA   29 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999985

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.40  E-value=4.4e-05  Score=59.51  Aligned_cols=25  Identities=20%  Similarity=0.361  Sum_probs=22.2

Q ss_pred             CCEEEEECCCCCcHHHHHHHHhCCc
Q 022663           42 GSRCLLVGANGSGKTTLLKILAGKH   66 (294)
Q Consensus        42 Ge~~~liG~NGsGKSTLlk~i~G~~   66 (294)
                      ..++.|.|++||||||+.+.|+..+
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~l   27 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSVL   27 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHc
Confidence            4689999999999999999998743

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=97.39  E-value=0.00072  Score=55.10  Aligned_cols=23  Identities=48%  Similarity=0.476  Sum_probs=19.1

Q ss_pred             CCEEEEECCCCCcHHHHHHHHhC
Q 022663           42 GSRCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        42 Ge~~~liG~NGsGKSTLlk~i~G   64 (294)
                      ..++.++||+|+||||.+-=|+-
T Consensus        10 ~~vi~lvGp~GvGKTTTiaKLA~   32 (207)
T d1ls1a2          10 RNLWFLVGLQGSGKTTTAAKLAL   32 (207)
T ss_dssp             SEEEEEECCTTTTHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            45889999999999998766654

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.39  E-value=3.7e-05  Score=58.93  Aligned_cols=21  Identities=43%  Similarity=0.626  Sum_probs=19.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 022663           44 RCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G   64 (294)
                      .+.|+||+||||||+.+.|+-
T Consensus         4 ~I~l~G~~GsGKSTvak~La~   24 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQ   24 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            578899999999999999985

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.36  E-value=0.00016  Score=60.75  Aligned_cols=22  Identities=41%  Similarity=0.478  Sum_probs=19.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      -+.|.||.|||||+|.+.|+..
T Consensus        42 ~vLL~GppGtGKT~la~alA~~   63 (246)
T d1d2na_          42 SVLLEGPPHSGKTALAAKIAEE   63 (246)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHhhc
Confidence            4789999999999999999873

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.36  E-value=3.9e-05  Score=61.06  Aligned_cols=22  Identities=36%  Similarity=0.308  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      ++||.||+|||||||.+.|.-.
T Consensus        24 iIgI~G~~GSGKSTla~~L~~~   45 (198)
T d1rz3a_          24 VLGIDGLSRSGKTTLANQLSQT   45 (198)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999999753

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.35  E-value=2.1e-05  Score=65.60  Aligned_cols=26  Identities=23%  Similarity=0.495  Sum_probs=23.0

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCc
Q 022663           41 PGSRCLLVGANGSGKTTLLKILAGKH   66 (294)
Q Consensus        41 ~Ge~~~liG~NGsGKSTLlk~i~G~~   66 (294)
                      +|..++++|+||+|||||+|.|.|..
T Consensus        96 ~~~~~vl~G~SGVGKSSLiN~L~~~~  121 (231)
T d1t9ha2          96 QDKTTVFAGQSGVGKSSLLNAISPEL  121 (231)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC--
T ss_pred             ccceEEEECCCCccHHHHHHhhccHh
Confidence            68899999999999999999999854

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.35  E-value=4.3e-05  Score=58.48  Aligned_cols=21  Identities=33%  Similarity=0.485  Sum_probs=18.7

Q ss_pred             CEEEEECCCCCcHHHHHHHHh
Q 022663           43 SRCLLVGANGSGKTTLLKILA   63 (294)
Q Consensus        43 e~~~liG~NGsGKSTLlk~i~   63 (294)
                      +++.|.|++|||||||.+.|.
T Consensus         3 klIii~G~pGsGKTTla~~L~   23 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFI   23 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            478899999999999999775

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=97.35  E-value=0.00011  Score=62.08  Aligned_cols=24  Identities=46%  Similarity=0.709  Sum_probs=20.9

Q ss_pred             CCEEEEECCCCCcHHHHHHHHhCC
Q 022663           42 GSRCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        42 Ge~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      ..-+.|.||.|||||+|.+.|+..
T Consensus        45 ~~~iLL~GppGtGKT~la~~iA~~   68 (256)
T d1lv7a_          45 PKGVLMVGPPGTGKTLLAKAIAGE   68 (256)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEeeCCCCCCccHHHHHHHHH
Confidence            345889999999999999999963

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.34  E-value=5.4e-05  Score=59.43  Aligned_cols=24  Identities=21%  Similarity=0.339  Sum_probs=21.2

Q ss_pred             CCEEEEECCCCCcHHHHHHHHhCC
Q 022663           42 GSRCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        42 Ge~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      ..+++|.|+.||||||+.+.|+-.
T Consensus         1 ~kiI~i~G~~GsGKsT~~~~L~~~   24 (190)
T d1khta_           1 NKVVVVTGVPGVGSTTSSQLAMDN   24 (190)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            368999999999999999999753

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=97.33  E-value=0.00028  Score=57.86  Aligned_cols=24  Identities=46%  Similarity=0.574  Sum_probs=18.9

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHh
Q 022663           40 SPGSRCLLVGANGSGKTTLLKILA   63 (294)
Q Consensus        40 ~~Ge~~~liG~NGsGKSTLlk~i~   63 (294)
                      .+..+++++||+|+||||.+-=|+
T Consensus         9 ~~p~vi~lvGptGvGKTTTiAKLA   32 (213)
T d1vmaa2           9 EPPFVIMVVGVNGTGKTTSCGKLA   32 (213)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH
Confidence            345589999999999999864444

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=97.32  E-value=3.6e-05  Score=61.88  Aligned_cols=22  Identities=23%  Similarity=0.477  Sum_probs=20.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .++|+|+.|+|||||++.|+|.
T Consensus        25 ~I~lvG~~n~GKSTLin~L~g~   46 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHhcCC
Confidence            4999999999999999999984

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=3.4e-05  Score=61.45  Aligned_cols=24  Identities=38%  Similarity=0.534  Sum_probs=22.1

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhC
Q 022663           41 PGSRCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        41 ~Ge~~~liG~NGsGKSTLlk~i~G   64 (294)
                      +|-++.|+|++||||||+.+.|+-
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~   41 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEE   41 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            577999999999999999999974

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.29  E-value=6e-05  Score=58.38  Aligned_cols=23  Identities=35%  Similarity=0.514  Sum_probs=20.5

Q ss_pred             CEEEEECCCCCcHHHHHHHHhCC
Q 022663           43 SRCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        43 e~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .++.|.||.||||||+.+.|+..
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~   25 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQ   25 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999999863

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.28  E-value=5.6e-05  Score=58.75  Aligned_cols=21  Identities=57%  Similarity=0.648  Sum_probs=18.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 022663           44 RCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G   64 (294)
                      .++|+||.||||||+.+.|+-
T Consensus         6 ~I~i~G~pGsGKTTia~~La~   26 (173)
T d1rkba_           6 NILLTGTPGVGKTTLGKELAS   26 (173)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            367999999999999999974

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=97.27  E-value=0.0007  Score=56.67  Aligned_cols=22  Identities=50%  Similarity=0.768  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      -+.|.||.|+|||+|.+.|+..
T Consensus        44 giLl~GppGtGKT~la~aia~~   65 (247)
T d1ixza_          44 GVLLVGPPGVGKTHLARAVAGE   65 (247)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEecCCCCChhHHHHHHHHH
Confidence            3899999999999999999973

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.22  E-value=7.9e-05  Score=63.34  Aligned_cols=27  Identities=37%  Similarity=0.639  Sum_probs=22.7

Q ss_pred             EeCCCEEEEECCCCCcHHHHHHHHhCC
Q 022663           39 ISPGSRCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        39 i~~Ge~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      +....-+.|.||.|+|||+|.+.+++.
T Consensus        38 ~~~~~giLL~Gp~GtGKT~l~~ala~~   64 (265)
T d1r7ra3          38 MTPSKGVLFYGPPGCGKTLLAKAIANE   64 (265)
T ss_dssp             CCCCCEEEEBCCTTSSHHHHHHHHHHH
T ss_pred             CCCCCeEEEECCCCCcchhHHHHHHHH
Confidence            344455889999999999999999984

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.17  E-value=8.7e-05  Score=59.43  Aligned_cols=20  Identities=45%  Similarity=0.725  Sum_probs=18.4

Q ss_pred             EEEECCCCCcHHHHHHHHhC
Q 022663           45 CLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        45 ~~liG~NGsGKSTLlk~i~G   64 (294)
                      ++|+||+|||||||++.|+-
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~   23 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFA   23 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999865

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.14  E-value=0.0039  Score=52.65  Aligned_cols=27  Identities=30%  Similarity=0.396  Sum_probs=23.2

Q ss_pred             EEeCCCEEEEECCCCCcHHHHHHHHhC
Q 022663           38 GISPGSRCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        38 ~i~~Ge~~~liG~NGsGKSTLlk~i~G   64 (294)
                      =++.|.++-|.||+|+|||||+-.++.
T Consensus        56 G~~~g~i~e~~G~~~~GKT~l~l~~~~   82 (269)
T d1mo6a1          56 GLPRGRVIEIYGPESSGKTTVALHAVA   82 (269)
T ss_dssp             SBCSSSEEEEECSSSSSHHHHHHHHHH
T ss_pred             CcccceeEEEecCCCcHHHHHHHHHHH
Confidence            578999999999999999999755543

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=97.12  E-value=0.001  Score=54.38  Aligned_cols=23  Identities=39%  Similarity=0.437  Sum_probs=14.8

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHh
Q 022663           41 PGSRCLLVGANGSGKTTLLKILA   63 (294)
Q Consensus        41 ~Ge~~~liG~NGsGKSTLlk~i~   63 (294)
                      ...+++++||+|+||||.+-=|+
T Consensus        11 ~p~vi~lvGptGvGKTTTiAKLA   33 (211)
T d1j8yf2          11 IPYVIMLVGVQGTGKATTAGKLA   33 (211)
T ss_dssp             SSEEEEEECSCCC----HHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH
Confidence            45689999999999999865444

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.12  E-value=0.00011  Score=59.81  Aligned_cols=21  Identities=19%  Similarity=0.254  Sum_probs=19.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 022663           44 RCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G   64 (294)
                      ++||.|++|||||||.+.|+-
T Consensus         4 iIgI~G~~gSGKSTla~~L~~   24 (213)
T d1uj2a_           4 LIGVSGGTASGKSSVCAKIVQ   24 (213)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998864

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=97.10  E-value=0.00011  Score=60.40  Aligned_cols=21  Identities=43%  Similarity=0.567  Sum_probs=19.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 022663           44 RCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G   64 (294)
                      +++|+|+.|||||||++.|..
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~   22 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGR   22 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHH
Confidence            689999999999999999964

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.10  E-value=0.00014  Score=57.98  Aligned_cols=22  Identities=27%  Similarity=0.510  Sum_probs=19.9

Q ss_pred             CEEEEECCCCCcHHHHHHHHhC
Q 022663           43 SRCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        43 e~~~liG~NGsGKSTLlk~i~G   64 (294)
                      ..+.|+||||+|||||++.|..
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~   25 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLIT   25 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999998874

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.08  E-value=0.00012  Score=58.86  Aligned_cols=20  Identities=50%  Similarity=0.732  Sum_probs=18.2

Q ss_pred             EEEECCCCCcHHHHHHHHhC
Q 022663           45 CLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        45 ~~liG~NGsGKSTLlk~i~G   64 (294)
                      ++|+||+|||||||.+.|+-
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~   22 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQ   22 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67999999999999999864

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=97.07  E-value=0.00015  Score=56.81  Aligned_cols=22  Identities=41%  Similarity=0.594  Sum_probs=20.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .++|+|+.|+|||||++.|+|.
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~   23 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKK   23 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC-
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999984

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=97.06  E-value=0.0067  Score=49.11  Aligned_cols=24  Identities=46%  Similarity=0.645  Sum_probs=19.7

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhC
Q 022663           41 PGSRCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        41 ~Ge~~~liG~NGsGKSTLlk~i~G   64 (294)
                      ++.+++++||+|+||||.+-=|+-
T Consensus         5 ~~~vi~lvGptGvGKTTTiaKLA~   28 (207)
T d1okkd2           5 KGRVVLVVGVNGVGKTTTIAKLGR   28 (207)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999998644453

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.05  E-value=0.00012  Score=57.84  Aligned_cols=22  Identities=36%  Similarity=0.613  Sum_probs=20.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      -++|+|+.|+|||||++.|+|.
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~   23 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGK   23 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3799999999999999999984

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.04  E-value=0.00012  Score=57.40  Aligned_cols=22  Identities=36%  Similarity=0.697  Sum_probs=20.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .++|+|++|||||||++.+.|-
T Consensus        15 kI~lvG~~~vGKTsLl~~l~~~   36 (186)
T d1f6ba_          15 KLVFLGLDNAGKTTLLHMLKDD   36 (186)
T ss_dssp             EEEEEEETTSSHHHHHHHHSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6889999999999999999884

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.04  E-value=0.00014  Score=58.22  Aligned_cols=24  Identities=25%  Similarity=0.336  Sum_probs=21.2

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhC
Q 022663           41 PGSRCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        41 ~Ge~~~liG~NGsGKSTLlk~i~G   64 (294)
                      +..+++|+||.||||||+.+.|+-
T Consensus         5 kp~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           5 KPNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            345899999999999999999984

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.02  E-value=0.00015  Score=56.54  Aligned_cols=20  Identities=45%  Similarity=0.675  Sum_probs=18.6

Q ss_pred             EEEECCCCCcHHHHHHHHhC
Q 022663           45 CLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        45 ~~liG~NGsGKSTLlk~i~G   64 (294)
                      +.|+|+.||||||+.+.|+-
T Consensus         3 I~liG~~GsGKsTi~k~La~   22 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAK   22 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67899999999999999985

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.01  E-value=9.5e-05  Score=58.67  Aligned_cols=20  Identities=40%  Similarity=0.569  Sum_probs=19.3

Q ss_pred             EEEECCCCCcHHHHHHHHhC
Q 022663           45 CLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        45 ~~liG~NGsGKSTLlk~i~G   64 (294)
                      +||+|+.++|||||++.|+|
T Consensus         4 VaiiG~~nvGKSSLin~L~~   23 (185)
T d1lnza2           4 VGLVGFPSVGKSTLLSVVSS   23 (185)
T ss_dssp             EEEESSTTSSHHHHHHHSEE
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            79999999999999999987

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.00  E-value=0.00018  Score=56.45  Aligned_cols=22  Identities=41%  Similarity=0.555  Sum_probs=20.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      +++|+|..|+|||||++.|+|.
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~~   28 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLGQ   28 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4899999999999999999984

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.00  E-value=0.00023  Score=56.75  Aligned_cols=26  Identities=35%  Similarity=0.399  Sum_probs=23.7

Q ss_pred             EeCCCEEEEECCCCCcHHHHHHHHhC
Q 022663           39 ISPGSRCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        39 i~~Ge~~~liG~NGsGKSTLlk~i~G   64 (294)
                      |++|+++.|.||+|||||||+--++.
T Consensus        20 i~~G~v~~i~G~~GsGKT~l~l~la~   45 (242)
T d1n0wa_          20 IETGSITEMFGEFRTGKTQICHTLAV   45 (242)
T ss_dssp             EETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcCCEEEEEEeCCCCCHHHHHHHHHH
Confidence            78999999999999999999877764

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.98  E-value=0.00019  Score=56.57  Aligned_cols=22  Identities=41%  Similarity=0.516  Sum_probs=20.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      +++|+|+.|+|||||++.|+|.
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            7999999999999999999984

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=96.98  E-value=0.00017  Score=56.58  Aligned_cols=21  Identities=43%  Similarity=0.559  Sum_probs=18.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 022663           44 RCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G   64 (294)
                      .+.|+|++||||||+.+.|+-
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~   24 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELAR   24 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            467899999999999999974

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.97  E-value=0.00015  Score=55.27  Aligned_cols=22  Identities=41%  Similarity=0.735  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .++|+|++|+|||||++.+.+-
T Consensus         2 KI~liG~~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKND   23 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999999873

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.92  E-value=0.00015  Score=57.18  Aligned_cols=21  Identities=33%  Similarity=0.471  Sum_probs=19.9

Q ss_pred             EEEECCCCCcHHHHHHHHhCC
Q 022663           45 CLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        45 ~~liG~NGsGKSTLlk~i~G~   65 (294)
                      +||+|..|+|||||++.|+|.
T Consensus         4 VaivG~~nvGKSTLin~L~~~   24 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTRA   24 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCSS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            899999999999999999984

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.92  E-value=0.00018  Score=57.71  Aligned_cols=26  Identities=27%  Similarity=0.394  Sum_probs=23.4

Q ss_pred             EeCCCEEEEECCCCCcHHHHHHHHhC
Q 022663           39 ISPGSRCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        39 i~~Ge~~~liG~NGsGKSTLlk~i~G   64 (294)
                      +.++.++.|+||.||||||+.+.|+-
T Consensus         5 ~~~~~iI~l~G~pGSGKsT~a~~La~   30 (194)
T d3adka_           5 LKKSKIIFVVGGPGSGKGTQCEKIVQ   30 (194)
T ss_dssp             HHTSCEEEEEECTTSSHHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence            45678999999999999999999985

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.91  E-value=0.00022  Score=57.11  Aligned_cols=24  Identities=29%  Similarity=0.353  Sum_probs=21.4

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhC
Q 022663           41 PGSRCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        41 ~Ge~~~liG~NGsGKSTLlk~i~G   64 (294)
                      +-.+++|+||.||||||+.+.|+-
T Consensus         7 ~~~iI~i~GppGSGKsT~a~~La~   30 (196)
T d1ukza_           7 QVSVIFVLGGPGAGKGTQCEKLVK   30 (196)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            345799999999999999999985

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=96.91  E-value=0.00019  Score=56.44  Aligned_cols=23  Identities=26%  Similarity=0.355  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhCCc
Q 022663           44 RCLLVGANGSGKTTLLKILAGKH   66 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~~   66 (294)
                      ++.|.|++||||||+.+.|+..+
T Consensus         3 iivi~G~~GsGKTT~~~~La~~L   25 (194)
T d1nksa_           3 IGIVTGIPGVGKSTVLAKVKEIL   25 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            67889999999999999998644

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=96.90  E-value=0.00019  Score=54.79  Aligned_cols=21  Identities=48%  Similarity=0.629  Sum_probs=19.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 022663           44 RCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G   64 (294)
                      .++|+|+.|||||||++.+++
T Consensus         2 kivlvG~~~vGKSsLi~~l~~   22 (160)
T d1r8sa_           2 RILMVGLDAAGKTTILYKLKL   22 (160)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            478999999999999999876

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=96.90  E-value=0.00024  Score=56.12  Aligned_cols=22  Identities=32%  Similarity=0.564  Sum_probs=20.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .+||+|+.|+|||||++.|+|.
T Consensus        10 kV~iiG~~~~GKSTLin~l~~~   31 (186)
T d1mkya2          10 KVAIVGRPNVGKSTLFNAILNK   31 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            4899999999999999999983

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=96.89  E-value=0.00029  Score=56.11  Aligned_cols=24  Identities=42%  Similarity=0.612  Sum_probs=22.1

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHh
Q 022663           40 SPGSRCLLVGANGSGKTTLLKILA   63 (294)
Q Consensus        40 ~~Ge~~~liG~NGsGKSTLlk~i~   63 (294)
                      ++|=.++|+||.||||||+.+.|+
T Consensus         1 p~~~riil~G~pGSGKsT~a~~La   24 (190)
T d1ak2a1           1 PKGVRAVLLGPPGAGKGTQAPKLA   24 (190)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHH
Confidence            467788999999999999999998

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=96.88  E-value=0.0002  Score=55.02  Aligned_cols=42  Identities=7%  Similarity=0.043  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHh
Q 022663          156 RRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQ  199 (294)
Q Consensus       156 kqRv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~  199 (294)
                      .-.-.++..++.+..+-++  |+|+.+-....++++.|.+..++
T Consensus       126 ~i~~~~~~~~~~~~~~~~~--~~SA~~g~gv~e~~~~l~~~l~~  167 (169)
T d1upta_         126 EMANSLGLPALKDRKWQIF--KTSATKGTGLDEAMEWLVETLKS  167 (169)
T ss_dssp             HHHHHHTGGGCTTSCEEEE--ECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhcCCCEEE--EEeCCCCCCHHHHHHHHHHHHHh
Confidence            3344455556666666555  89999999999888888766543

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.88  E-value=0.00023  Score=55.49  Aligned_cols=20  Identities=50%  Similarity=0.680  Sum_probs=18.2

Q ss_pred             EEEECCCCCcHHHHHHHHhC
Q 022663           45 CLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        45 ~~liG~NGsGKSTLlk~i~G   64 (294)
                      +.|+|+.||||||+.+.|+-
T Consensus         4 IvliG~~G~GKSTig~~La~   23 (165)
T d2iyva1           4 AVLVGLPGSGKSTIGRRLAK   23 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            66889999999999999985

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.87  E-value=0.0003  Score=55.55  Aligned_cols=25  Identities=24%  Similarity=0.298  Sum_probs=21.9

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhC
Q 022663           40 SPGSRCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        40 ~~Ge~~~liG~NGsGKSTLlk~i~G   64 (294)
                      ++-+++.++|+.||||||+.+-++-
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            5668999999999999999988753

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.85  E-value=0.00021  Score=57.37  Aligned_cols=22  Identities=36%  Similarity=0.656  Sum_probs=20.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .++|+|+.|||||||++.|+|-
T Consensus         5 ~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           5 SIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999874

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=96.85  E-value=0.00025  Score=54.56  Aligned_cols=22  Identities=36%  Similarity=0.765  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .++|+|+.|+|||||++.|+|.
T Consensus         3 kI~lvG~~nvGKSsLin~l~~~   24 (161)
T d2gj8a1           3 KVVIAGRPNAGKSSLLNALAGR   24 (161)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999984

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=96.84  E-value=0.00021  Score=56.90  Aligned_cols=21  Identities=29%  Similarity=0.501  Sum_probs=19.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 022663           44 RCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G   64 (294)
                      ++.|+||.||||||+.+.|+-
T Consensus         5 ~I~i~GppGsGKsT~a~~La~   25 (189)
T d1zaka1           5 KVMISGAPASGKGTQCELIKT   25 (189)
T ss_dssp             CEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999974

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.80  E-value=0.00028  Score=56.20  Aligned_cols=20  Identities=35%  Similarity=0.458  Sum_probs=18.8

Q ss_pred             EEEEECCCCCcHHHHHHHHh
Q 022663           44 RCLLVGANGSGKTTLLKILA   63 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~   63 (294)
                      ++||.|+.||||||+.+.|.
T Consensus         5 IIgitG~~gSGKstva~~l~   24 (191)
T d1uf9a_           5 IIGITGNIGSGKSTVAALLR   24 (191)
T ss_dssp             EEEEEECTTSCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            78999999999999999985

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.80  E-value=0.00032  Score=55.90  Aligned_cols=21  Identities=24%  Similarity=0.396  Sum_probs=19.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 022663           44 RCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G   64 (294)
                      ++.|+||.||||||..+.|+-
T Consensus         3 iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           3 VVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999984

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.78  E-value=0.00033  Score=55.01  Aligned_cols=21  Identities=29%  Similarity=0.466  Sum_probs=18.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 022663           44 RCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G   64 (294)
                      .+.|+||.||||||+.+.|+-
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIVA   22 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            378999999999999999974

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.77  E-value=0.00034  Score=56.07  Aligned_cols=21  Identities=33%  Similarity=0.403  Sum_probs=19.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 022663           44 RCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G   64 (294)
                      ++.++|..|||||||.+.|+.
T Consensus         4 li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           4 LIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999985

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=96.77  E-value=0.00036  Score=53.96  Aligned_cols=22  Identities=45%  Similarity=0.804  Sum_probs=20.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .++|+|+.|||||||++.+.|.
T Consensus         4 ki~ivG~~~~GKTsLi~~l~~~   25 (165)
T d1ksha_           4 RLLMLGLDNAGKTTILKKFNGE   25 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHcCC
Confidence            4789999999999999999984

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.69  E-value=0.00029  Score=56.20  Aligned_cols=23  Identities=39%  Similarity=0.442  Sum_probs=20.9

Q ss_pred             CEEEEECCCCCcHHHHHHHHhCC
Q 022663           43 SRCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        43 e~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      =+++|-|+.||||||+++.|+..
T Consensus        10 ~~I~ieG~~GsGKTTl~~~L~~~   32 (197)
T d2vp4a1          10 FTVLIEGNIGSGKTTYLNHFEKY   32 (197)
T ss_dssp             EEEEEECSTTSCHHHHHHTTGGG
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            48999999999999999999863

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=96.68  E-value=0.00022  Score=55.83  Aligned_cols=22  Identities=23%  Similarity=0.486  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .++|+|+.++|||||++.|+|.
T Consensus        18 ~I~lvG~~NvGKSSL~n~L~~~   39 (188)
T d1puia_          18 EVAFAGRSNAGKSSALNTLTNQ   39 (188)
T ss_dssp             EEEEEECTTSSHHHHHTTTCCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4999999999999999999984

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.66  E-value=0.00028  Score=58.85  Aligned_cols=25  Identities=36%  Similarity=0.441  Sum_probs=21.7

Q ss_pred             CCEEEEECCCCCcHHHHHHHHhCCc
Q 022663           42 GSRCLLVGANGSGKTTLLKILAGKH   66 (294)
Q Consensus        42 Ge~~~liG~NGsGKSTLlk~i~G~~   66 (294)
                      ...+.|.||.|||||||.+.|++.+
T Consensus        32 P~~ilL~GpPGtGKT~la~~la~~~   56 (273)
T d1gvnb_          32 PTAFLLGGQPGSGKTSLRSAIFEET   56 (273)
T ss_dssp             CEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHh
Confidence            3458899999999999999999844

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.66  E-value=0.00046  Score=55.77  Aligned_cols=21  Identities=38%  Similarity=0.501  Sum_probs=19.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 022663           44 RCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G   64 (294)
                      +++|.||.||||||+.+.|+-
T Consensus         5 iI~I~GppGSGKgT~ak~La~   25 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAE   25 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            899999999999999999973

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=96.64  E-value=0.00048  Score=54.36  Aligned_cols=21  Identities=29%  Similarity=0.436  Sum_probs=19.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 022663           44 RCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G   64 (294)
                      .+.|+||.||||||+.+.|+-
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVE   22 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999984

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=96.63  E-value=0.0034  Score=56.04  Aligned_cols=45  Identities=16%  Similarity=0.130  Sum_probs=32.1

Q ss_pred             HHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCh
Q 022663          159 VQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIF  211 (294)
Q Consensus       159 v~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~  211 (294)
                      -+|..+|=++|++|+..|..   |+++....+    +.+ ..|..|+-+-|=-
T Consensus       218 ~~l~~~lR~dPDvi~igEiR---d~~ta~~a~----~aa-~tGhlV~tTlHa~  262 (401)
T d1p9ra_         218 RGLRAILRQDPDVVMVGEIR---DLETAQIAV----QAS-LTGHLVMSTLHTN  262 (401)
T ss_dssp             HHHHHHGGGCCSEEEESCCC---SHHHHHHHH----HHH-HTTCEEEEEECCS
T ss_pred             HHHHHHHhhcCCEEEecCcC---ChHHHHHHH----HHH-hcCCeEEEEeccC
Confidence            34667788999999999986   566554443    333 3588888888854

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.60  E-value=0.00051  Score=55.74  Aligned_cols=21  Identities=38%  Similarity=0.540  Sum_probs=19.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 022663           44 RCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G   64 (294)
                      +++|-||.||||||+.+.|+-
T Consensus         5 ~IaIdGp~GsGKgT~ak~La~   25 (223)
T d1q3ta_           5 QIAIDGPASSGKSTVAKIIAK   25 (223)
T ss_dssp             EEEEECSSCSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            578889999999999999985

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.60  E-value=0.00038  Score=60.76  Aligned_cols=29  Identities=31%  Similarity=0.407  Sum_probs=24.5

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCcccC
Q 022663           41 PGSRCLLVGANGSGKTTLLKILAGKHMVG   69 (294)
Q Consensus        41 ~Ge~~~liG~NGsGKSTLlk~i~G~~~~~   69 (294)
                      .+.-+.|.|+-|||||||++.|++.++++
T Consensus       165 ~~~nili~G~tgSGKTT~l~al~~~i~~~  193 (323)
T d1g6oa_         165 IGKNVIVCGGTGSGKTTYIKSIMEFIPKE  193 (323)
T ss_dssp             HTCCEEEEESTTSSHHHHHHHHGGGSCTT
T ss_pred             hCCCEEEEeeccccchHHHHHHhhhcccc
Confidence            34458999999999999999999977654

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.59  E-value=0.00052  Score=55.92  Aligned_cols=25  Identities=36%  Similarity=0.396  Sum_probs=22.8

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhC
Q 022663           40 SPGSRCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        40 ~~Ge~~~liG~NGsGKSTLlk~i~G   64 (294)
                      ++|-++-|.|.+|||||||.+.|.-
T Consensus        22 ~kg~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          22 QRGLTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            6788999999999999999999863

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=96.58  E-value=0.00053  Score=53.39  Aligned_cols=22  Identities=32%  Similarity=0.588  Sum_probs=20.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .++|+|..|||||||++.|.|.
T Consensus        17 kI~vvG~~~~GKSsLi~rl~~~   38 (177)
T d1zj6a1          17 KVIIVGLDNAGKTTILYQFSMN   38 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5889999999999999999883

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=96.57  E-value=0.00056  Score=55.35  Aligned_cols=20  Identities=40%  Similarity=0.549  Sum_probs=18.9

Q ss_pred             EEEEECCCCCcHHHHHHHHh
Q 022663           44 RCLLVGANGSGKTTLLKILA   63 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~   63 (294)
                      ++||+|+.||||||+.+++.
T Consensus         4 iIgITG~igSGKStv~~~l~   23 (205)
T d1jjva_           4 IVGLTGGIGSGKTTIANLFT   23 (205)
T ss_dssp             EEEEECSTTSCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            68999999999999999986

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.56  E-value=0.00061  Score=55.09  Aligned_cols=25  Identities=24%  Similarity=0.400  Sum_probs=22.6

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhCC
Q 022663           41 PGSRCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        41 ~Ge~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      +|.+++|-|+-||||||+++.|+-.
T Consensus         1 rgkfIviEG~dGsGKsT~~~~L~~~   25 (210)
T d4tmka_           1 RSKYIVIEGLEGAGKTTARNVVVET   25 (210)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHH
Confidence            5889999999999999999999853

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.55  E-value=0.00049  Score=57.94  Aligned_cols=22  Identities=27%  Similarity=0.613  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .++|+|..|+|||||+|.|.|.
T Consensus        34 ~I~LvG~tg~GKSSliN~ilg~   55 (257)
T d1h65a_          34 TILVMGKGGVGKSSTVNSIIGE   55 (257)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            4899999999999999999994

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.52  E-value=0.00058  Score=53.65  Aligned_cols=21  Identities=33%  Similarity=0.482  Sum_probs=18.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 022663           44 RCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G   64 (294)
                      .+.|+||.||||||..+.|+-
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~   22 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIME   22 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999973

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.50  E-value=0.00069  Score=55.14  Aligned_cols=26  Identities=27%  Similarity=0.383  Sum_probs=23.1

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhCC
Q 022663           40 SPGSRCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        40 ~~Ge~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .+|-+++|-|+-||||||+.+.|+-.
T Consensus         1 ~rG~lI~ieG~dGsGKsT~~~~L~~~   26 (209)
T d1nn5a_           1 RRGALIVLEGVDRAGKSTQSRKLVEA   26 (209)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHHH
Confidence            37889999999999999999998753

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.50  E-value=0.00069  Score=53.32  Aligned_cols=21  Identities=48%  Similarity=0.610  Sum_probs=19.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 022663           44 RCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G   64 (294)
                      .+.|+||.||||||+.+.|+-
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~   22 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAE   22 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999974

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=96.49  E-value=0.00044  Score=56.55  Aligned_cols=23  Identities=48%  Similarity=0.541  Sum_probs=18.4

Q ss_pred             CCEEEEECCCCCcHHHHHHHHhC
Q 022663           42 GSRCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        42 Ge~~~liG~NGsGKSTLlk~i~G   64 (294)
                      -.+++++||+|+||||.+-=|+-
T Consensus         9 p~vi~lvGptGvGKTTTiAKLA~   31 (211)
T d2qy9a2           9 PFVILMVGVNGVGKTTTIGKLAR   31 (211)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            35899999999999998755553

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.46  E-value=0.00067  Score=55.54  Aligned_cols=22  Identities=41%  Similarity=0.499  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .+.|.||+|+|||||.++|+..
T Consensus        47 ~lll~Gp~G~GKTtla~~iak~   68 (231)
T d1iqpa2          47 HLLFAGPPGVGKTTAALALARE   68 (231)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            4789999999999999999864

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.44  E-value=0.00085  Score=54.63  Aligned_cols=25  Identities=36%  Similarity=0.465  Sum_probs=23.3

Q ss_pred             EeCCCEEEEECCCCCcHHHHHHHHh
Q 022663           39 ISPGSRCLLVGANGSGKTTLLKILA   63 (294)
Q Consensus        39 i~~Ge~~~liG~NGsGKSTLlk~i~   63 (294)
                      +++|.++.|.||.|||||||.--++
T Consensus        31 i~~G~~~li~G~pGsGKT~l~lq~~   55 (251)
T d1szpa2          31 VETGSITELFGEFRTGKSQLCHTLA   55 (251)
T ss_dssp             EESSSEEEEEESTTSSHHHHHHHHT
T ss_pred             CcCCeEEEEEcCCCCCHHHHHHHHH
Confidence            8999999999999999999997775

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.44  E-value=0.00044  Score=56.69  Aligned_cols=25  Identities=24%  Similarity=0.310  Sum_probs=22.4

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhCC
Q 022663           41 PGSRCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        41 ~Ge~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      ++.+++|-|+-||||||+++.|+..
T Consensus         1 ~~k~I~ieG~dGsGKST~~~~L~~~   25 (241)
T d1p5zb_           1 RIKKISIEGNIAAGKSTFVNILKQL   25 (241)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHH
Confidence            3678999999999999999999864

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.42  E-value=0.00019  Score=55.22  Aligned_cols=22  Identities=41%  Similarity=0.623  Sum_probs=20.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .++|+|+.|+|||||++.|+|.
T Consensus         2 kI~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           2 RMVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEEECCHHHHTCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4799999999999999999983

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.41  E-value=0.00087  Score=55.39  Aligned_cols=23  Identities=35%  Similarity=0.528  Sum_probs=20.8

Q ss_pred             CEEEEECCCCCcHHHHHHHHhCC
Q 022663           43 SRCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        43 e~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      ..+.|.||+|+||||+.++|+..
T Consensus        53 ~~lll~GPpG~GKTt~a~~la~~   75 (253)
T d1sxja2          53 RAAMLYGPPGIGKTTAAHLVAQE   75 (253)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999999973

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=96.40  E-value=0.00069  Score=52.42  Aligned_cols=21  Identities=43%  Similarity=0.594  Sum_probs=18.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 022663           44 RCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G   64 (294)
                      .++|+|+.|+|||||++.+.+
T Consensus         4 ki~i~G~~~~GKTsLl~~l~~   24 (164)
T d1zd9a1           4 ELTLVGLQYSGKTTFVNVIAS   24 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            378999999999999998865

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.39  E-value=0.00062  Score=54.76  Aligned_cols=21  Identities=43%  Similarity=0.466  Sum_probs=19.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 022663           44 RCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G   64 (294)
                      -++|+|+.|||||||++.+.+
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~   22 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLT   22 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            489999999999999999986

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.37  E-value=0.00077  Score=58.30  Aligned_cols=23  Identities=22%  Similarity=0.287  Sum_probs=20.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhCCc
Q 022663           44 RCLLVGANGSGKTTLLKILAGKH   66 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~~   66 (294)
                      ++||.|++|||||||.+.|.-++
T Consensus        82 iIGIaG~sgSGKSTla~~L~~lL  104 (308)
T d1sq5a_          82 IISIAGSVAVGKSTTARVLQALL  104 (308)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCCCcHHHHHHHHHH
Confidence            89999999999999999997644

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.36  E-value=0.00093  Score=52.64  Aligned_cols=21  Identities=38%  Similarity=0.547  Sum_probs=18.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 022663           44 RCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G   64 (294)
                      .+.|+||-||||||+.+.|+-
T Consensus         4 rIvl~G~pGSGKtT~a~~La~   24 (180)
T d1akya1           4 RMVLIGPPGAGKGTQAPNLQE   24 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            467899999999999999984

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.36  E-value=0.00092  Score=54.50  Aligned_cols=24  Identities=38%  Similarity=0.455  Sum_probs=22.6

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhC
Q 022663           41 PGSRCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        41 ~Ge~~~liG~NGsGKSTLlk~i~G   64 (294)
                      +|.+++|-|+-||||||+.+.|+-
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~   25 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYK   25 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHH
Confidence            699999999999999999999975

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=96.34  E-value=0.00096  Score=53.25  Aligned_cols=21  Identities=38%  Similarity=0.575  Sum_probs=19.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 022663           44 RCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G   64 (294)
                      .++|+||.||||||+.+.|+-
T Consensus         8 rIiliG~PGSGKtT~a~~La~   28 (189)
T d2ak3a1           8 RAAIMGAPGSGKGTVSSRITK   28 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            678999999999999999985

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=96.32  E-value=0.00087  Score=52.84  Aligned_cols=21  Identities=38%  Similarity=0.392  Sum_probs=19.9

Q ss_pred             EEEECCCCCcHHHHHHHHhCC
Q 022663           45 CLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        45 ~~liG~NGsGKSTLlk~i~G~   65 (294)
                      +||+|+-.||||||++.|+|.
T Consensus         8 IaiiG~~naGKSTL~n~L~~~   28 (179)
T d1wb1a4           8 LGIFGHIDHGKTTLSKVLTEI   28 (179)
T ss_dssp             EEEEECTTSSHHHHHHHHHTT
T ss_pred             EEEEeCCCCcHHHHHHHHHHh
Confidence            899999999999999999984

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=96.31  E-value=0.00099  Score=53.96  Aligned_cols=20  Identities=40%  Similarity=0.539  Sum_probs=19.0

Q ss_pred             EEEEECCCCCcHHHHHHHHh
Q 022663           44 RCLLVGANGSGKTTLLKILA   63 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~   63 (294)
                      ++||+|..||||||..+++.
T Consensus         5 iIgitG~igSGKStv~~~l~   24 (208)
T d1vhta_           5 IVALTGGIGSGKSTVANAFA   24 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHH
T ss_pred             EEEEECCCcCCHHHHHHHHH
Confidence            78999999999999999986

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=96.29  E-value=0.013  Score=50.57  Aligned_cols=33  Identities=24%  Similarity=0.240  Sum_probs=24.9

Q ss_pred             eeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCC
Q 022663           32 FYDFNLGISPGSRCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        32 L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      ++-+-...++| ++.+.||.|+|||.|.+.|++.
T Consensus       114 ~~~~~~~~~~g-~~l~~G~pG~GKT~la~ala~~  146 (321)
T d1w44a_         114 AEFGGHRYASG-MVIVTGKGNSGKTPLVHALGEA  146 (321)
T ss_dssp             EEETTEEEESE-EEEEECSSSSCHHHHHHHHHHH
T ss_pred             HHHhhcccCCc-eEEEECCCCccHHHHHHHHHHH
Confidence            33334455665 5666899999999999999984

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=96.29  E-value=0.00098  Score=51.89  Aligned_cols=21  Identities=62%  Similarity=0.847  Sum_probs=19.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 022663           44 RCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G   64 (294)
                      .++++|+.|+|||||++.+.+
T Consensus        18 kI~vvG~~~vGKSsLi~~l~~   38 (176)
T d1fzqa_          18 RILLLGLDNAGKTTLLKQLAS   38 (176)
T ss_dssp             EEEEEESTTSSHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            488999999999999999977

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.29  E-value=0.00087  Score=52.21  Aligned_cols=20  Identities=30%  Similarity=0.659  Sum_probs=18.4

Q ss_pred             EEEECCCCCcHHHHHHHHhC
Q 022663           45 CLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        45 ~~liG~NGsGKSTLlk~i~G   64 (294)
                      ++|+|+.|+|||||++.+.+
T Consensus         5 i~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           5 VIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHc
Confidence            78999999999999998875

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.28  E-value=0.00094  Score=54.53  Aligned_cols=21  Identities=33%  Similarity=0.559  Sum_probs=19.4

Q ss_pred             EEEECCCCCcHHHHHHHHhCC
Q 022663           45 CLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        45 ~~liG~NGsGKSTLlk~i~G~   65 (294)
                      +.|.||+|+|||||.++++..
T Consensus        36 lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          36 MLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCChHHHHHHHHHH
Confidence            789999999999999999864

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=96.22  E-value=0.001  Score=58.00  Aligned_cols=26  Identities=27%  Similarity=0.360  Sum_probs=22.4

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhCC
Q 022663           40 SPGSRCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        40 ~~Ge~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .+.-++||+||.|||||||+..++..
T Consensus        52 ~~~~~IgitG~pGaGKSTLi~~l~~~   77 (327)
T d2p67a1          52 GNTLRLGVTGTPGAGKSTFLEAFGML   77 (327)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred             CCceEEEeeCCCCCCHHHHHHHHHHH
Confidence            45668999999999999999999753

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.21  E-value=0.0014  Score=52.94  Aligned_cols=59  Identities=17%  Similarity=0.079  Sum_probs=38.9

Q ss_pred             cCCCEEEeeCCCCCC----CHHHHHHHHHHHHHHHHhcCcEEEEEeCChh---------HHHhhhceEEEee
Q 022663          167 HPFKVLLLDEITVDL----DVVARMDLLDFFKDECEQRGATIVYATHIFD---------GLETWATHLAYIQ  225 (294)
Q Consensus       167 ~~p~iLlLDEPt~gL----D~~~~~~l~~~l~~~~~~~g~tviivsHd~~---------~~~~~~d~v~~l~  225 (294)
                      .+|+++++|=-+.-.    +.......+..+...+++.+.|+++++|...         .....+|.++.+.
T Consensus       124 ~~~~~viiD~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~  195 (242)
T d1tf7a1         124 YRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILR  195 (242)
T ss_dssp             HTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEE
T ss_pred             hccchhhhhHHHHHHHhccChhHHHHHHHHHHHHHHhcCCceEEeecccccccccccCcceeeeccEEEEEE
Confidence            478999999654433    3344444555555666778999999988543         3455678777664

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.19  E-value=0.001  Score=51.66  Aligned_cols=20  Identities=35%  Similarity=0.534  Sum_probs=18.3

Q ss_pred             EEEECCCCCcHHHHHHHHhC
Q 022663           45 CLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        45 ~~liG~NGsGKSTLlk~i~G   64 (294)
                      ++++|+.|+|||||++.+.+
T Consensus         8 i~vvG~~~vGKTsLi~~l~~   27 (169)
T d3raba_           8 ILIIGNSSVGKTSFLFRYAD   27 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHc
Confidence            88999999999999998764

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.19  E-value=0.0013  Score=54.44  Aligned_cols=24  Identities=25%  Similarity=0.441  Sum_probs=21.3

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhC
Q 022663           41 PGSRCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        41 ~Ge~~~liG~NGsGKSTLlk~i~G   64 (294)
                      .+.++.|.||.|+|||||++.++-
T Consensus        28 ~~~~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          28 RAPITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred             cCCEEEEEcCCCCcHHHHHHHHHH
Confidence            567899999999999999998763

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.18  E-value=0.00095  Score=51.68  Aligned_cols=21  Identities=38%  Similarity=0.572  Sum_probs=18.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 022663           44 RCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G   64 (294)
                      .++|+|+.|+|||||++.+.+
T Consensus         5 Ki~viG~~~vGKTsli~~l~~   25 (166)
T d1ctqa_           5 KLVVVGAGGVGKSALTIQLIQ   25 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            389999999999999988875

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.18  E-value=0.00059  Score=58.39  Aligned_cols=23  Identities=17%  Similarity=0.312  Sum_probs=17.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhCCc
Q 022663           44 RCLLVGANGSGKTTLLKILAGKH   66 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~~   66 (294)
                      ++||.|++||||||+.+.|.-.+
T Consensus         6 IIgIaG~SGSGKTTva~~l~~i~   28 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVKHTFDQIF   28 (288)
T ss_dssp             EEEEESCC---CCTHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHHH
Confidence            89999999999999999887543

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.16  E-value=0.0012  Score=54.15  Aligned_cols=22  Identities=50%  Similarity=0.730  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .+.+.||.|+|||||.++|+..
T Consensus        37 ~~L~~GPpGtGKT~lA~~la~~   58 (238)
T d1in4a2          37 HVLLAGPPGLGKTTLAHIIASE   58 (238)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHhc
Confidence            4789999999999999999864

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.11  E-value=0.0012  Score=51.59  Aligned_cols=20  Identities=35%  Similarity=0.680  Sum_probs=18.1

Q ss_pred             EEEECCCCCcHHHHHHHHhC
Q 022663           45 CLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        45 ~~liG~NGsGKSTLlk~i~G   64 (294)
                      ++|+|+.|+|||||++.+.+
T Consensus         7 i~vvG~~~vGKTsLi~~~~~   26 (175)
T d2f9la1           7 VVLIGDSGVGKSNLLSRFTR   26 (175)
T ss_dssp             EEEESSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            88999999999999997754

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.09  E-value=0.0014  Score=53.58  Aligned_cols=26  Identities=31%  Similarity=0.318  Sum_probs=23.7

Q ss_pred             EEeCCCEEEEECCCCCcHHHHHHHHh
Q 022663           38 GISPGSRCLLVGANGSGKTTLLKILA   63 (294)
Q Consensus        38 ~i~~Ge~~~liG~NGsGKSTLlk~i~   63 (294)
                      =|++|.++.|.||+|||||||.-.++
T Consensus        33 Gip~G~~~~i~G~~GsGKT~lalq~~   58 (258)
T d1v5wa_          33 GIESMAITEAFGEFRTGKTQLSHTLC   58 (258)
T ss_dssp             SBCSSEEEEEECCTTCTHHHHHHHHH
T ss_pred             CCcCCEEEEEECCCCCCHHHHHHHHH
Confidence            38999999999999999999987775

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.07  E-value=0.0016  Score=52.97  Aligned_cols=25  Identities=28%  Similarity=0.385  Sum_probs=23.0

Q ss_pred             EeCCCEEEEECCCCCcHHHHHHHHh
Q 022663           39 ISPGSRCLLVGANGSGKTTLLKILA   63 (294)
Q Consensus        39 i~~Ge~~~liG~NGsGKSTLlk~i~   63 (294)
                      +++|+++.|.|+.|+|||||.--++
T Consensus        31 l~~G~l~~i~G~~G~GKT~~~l~~a   55 (258)
T d2i1qa2          31 LESQSVTEFAGVFGSGKTQIMHQSC   55 (258)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHHH
T ss_pred             ccCCeEEEEEeCCCCCHHHHHHHHH
Confidence            8999999999999999999986665

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.06  E-value=0.0013  Score=58.97  Aligned_cols=21  Identities=33%  Similarity=0.670  Sum_probs=20.1

Q ss_pred             EEEECCCCCcHHHHHHHHhCC
Q 022663           45 CLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        45 ~~liG~NGsGKSTLlk~i~G~   65 (294)
                      ++|+|..|+|||||+|.|.|.
T Consensus        59 Iai~G~~n~GKSSLiNaL~G~   79 (400)
T d1tq4a_          59 VAVTGETGSGKSSFINTLRGI   79 (400)
T ss_dssp             EEEEECTTSSHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            899999999999999999984

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.06  E-value=0.0017  Score=51.03  Aligned_cols=20  Identities=40%  Similarity=0.549  Sum_probs=18.6

Q ss_pred             EEEECCCCCcHHHHHHHHhC
Q 022663           45 CLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        45 ~~liG~NGsGKSTLlk~i~G   64 (294)
                      ++|+|+.|+|||||++.+.+
T Consensus         8 i~ivG~~~vGKTsLi~~l~~   27 (186)
T d2f7sa1           8 LLALGDSGVGKTTFLYRYTD   27 (186)
T ss_dssp             EEEESCTTSSHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHhc
Confidence            78999999999999998876

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.06  E-value=0.0017  Score=50.47  Aligned_cols=27  Identities=30%  Similarity=0.294  Sum_probs=24.3

Q ss_pred             EEeCCCEEEEECCCCCcHHHHHHHHhC
Q 022663           38 GISPGSRCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        38 ~i~~Ge~~~liG~NGsGKSTLlk~i~G   64 (294)
                      ..++|.+++|-|+=|||||||.|.++.
T Consensus        29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~   55 (158)
T d1htwa_          29 HTEKAIMVYLNGDLGAGKTTLTRGMLQ   55 (158)
T ss_dssp             CCSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cCCCCeEEEEecCCCccHHHHHHHHHh
Confidence            457899999999999999999999973

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.04  E-value=0.0018  Score=50.16  Aligned_cols=21  Identities=33%  Similarity=0.564  Sum_probs=18.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 022663           44 RCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G   64 (294)
                      .++|+|..|+|||||++-+.+
T Consensus         4 Ki~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           4 RVAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            478999999999999988765

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.04  E-value=0.0016  Score=53.43  Aligned_cols=24  Identities=38%  Similarity=0.446  Sum_probs=22.0

Q ss_pred             EeCCCEEEEECCCCCcHHHHHHHH
Q 022663           39 ISPGSRCLLVGANGSGKTTLLKIL   62 (294)
Q Consensus        39 i~~Ge~~~liG~NGsGKSTLlk~i   62 (294)
                      +++|.++.|.||.|||||||.--+
T Consensus        33 lp~G~~~li~G~pGsGKT~~~lq~   56 (254)
T d1pzna2          33 IETQAITEVFGEFGSGKTQLAHTL   56 (254)
T ss_dssp             EESSEEEEEEESTTSSHHHHHHHH
T ss_pred             ccCCEEEEEEcCCCCCHHHHHHHH
Confidence            899999999999999999997644

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.03  E-value=0.0016  Score=56.15  Aligned_cols=25  Identities=32%  Similarity=0.508  Sum_probs=21.2

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhCC
Q 022663           41 PGSRCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        41 ~Ge~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      ++.-+.++||.|||||+|.|+|+..
T Consensus        48 ~~~~iLl~GPpG~GKT~lAkalA~~   72 (309)
T d1ofha_          48 TPKNILMIGPTGVGKTEIARRLAKL   72 (309)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHhhc
Confidence            3345678999999999999999974

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.01  E-value=0.0018  Score=49.90  Aligned_cols=20  Identities=20%  Similarity=0.487  Sum_probs=17.7

Q ss_pred             EEEECCCCCcHHHHHHHHhC
Q 022663           45 CLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        45 ~~liG~NGsGKSTLlk~i~G   64 (294)
                      ++|+|+.|+|||||++-+.+
T Consensus         5 v~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           5 MVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999986663

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.99  E-value=0.002  Score=49.98  Aligned_cols=22  Identities=45%  Similarity=0.833  Sum_probs=19.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .++|+|..|+|||||++.+.+.
T Consensus         3 Ki~lvG~~~vGKTsLi~~~~~~   24 (168)
T d2gjsa1           3 KVLLLGAPGVGKSALARIFGGV   24 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCcCHHHHHHHHhCC
Confidence            3789999999999999999884

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.99  E-value=0.0018  Score=51.75  Aligned_cols=23  Identities=35%  Similarity=0.598  Sum_probs=20.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhCCc
Q 022663           44 RCLLVGANGSGKTTLLKILAGKH   66 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~~   66 (294)
                      +++|-|.-||||||+++.|...+
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l   24 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAF   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            58899999999999999998543

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=95.95  E-value=0.0012  Score=51.74  Aligned_cols=22  Identities=45%  Similarity=0.649  Sum_probs=19.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .++|+|+.|+|||||++.+.+-
T Consensus        19 KI~lvG~~~vGKTsLi~~l~~~   40 (182)
T d1moza_          19 RILILGLDGAGKTTILYRLQIG   40 (182)
T ss_dssp             EEEEEEETTSSHHHHHHHTCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999998763

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.90  E-value=0.0017  Score=50.56  Aligned_cols=20  Identities=30%  Similarity=0.635  Sum_probs=18.1

Q ss_pred             EEEECCCCCcHHHHHHHHhC
Q 022663           45 CLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        45 ~~liG~NGsGKSTLlk~i~G   64 (294)
                      ++|+|+.|+|||||++.+.+
T Consensus         6 ivvvG~~~vGKTsli~r~~~   25 (173)
T d2a5ja1           6 YIIIGDTGVGKSCLLLQFTD   25 (173)
T ss_dssp             EEEESSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHhc
Confidence            78999999999999998764

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.90  E-value=0.0019  Score=49.78  Aligned_cols=20  Identities=40%  Similarity=0.647  Sum_probs=18.1

Q ss_pred             EEEECCCCCcHHHHHHHHhC
Q 022663           45 CLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        45 ~~liG~NGsGKSTLlk~i~G   64 (294)
                      ++++|.+|+|||||++.+++
T Consensus         5 i~vvG~~~vGKTSli~~l~~   24 (166)
T d1g16a_           5 ILLIGDSGVGKSCLLVRFVE   24 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998764

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.89  E-value=0.0016  Score=50.36  Aligned_cols=21  Identities=19%  Similarity=0.349  Sum_probs=18.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 022663           44 RCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G   64 (294)
                      .++|+|+.|+|||||++.+.+
T Consensus         6 Kv~liG~~~vGKTsLl~~~~~   26 (167)
T d1xtqa1           6 KIAILGYRSVGKSSLTIQFVE   26 (167)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999998764

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=95.87  E-value=0.002  Score=52.85  Aligned_cols=22  Identities=45%  Similarity=0.667  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .+.+.||.|+|||||.+++++.
T Consensus        37 ~~Ll~GPpG~GKTtla~~la~~   58 (239)
T d1ixsb2          37 HLLLFGPPGLGKTTLAHVIAHE   58 (239)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4779999999999999999974

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.86  E-value=0.0017  Score=50.47  Aligned_cols=21  Identities=33%  Similarity=0.542  Sum_probs=18.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 022663           44 RCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G   64 (294)
                      .++|+|..|+|||||++-+.+
T Consensus         7 Ki~lvG~~~vGKTsLi~r~~~   27 (171)
T d2erya1           7 RLVVVGGGGVGKSALTIQFIQ   27 (171)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            489999999999999987654

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.85  E-value=0.0025  Score=49.63  Aligned_cols=22  Identities=50%  Similarity=0.866  Sum_probs=19.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .++|+|..|+|||||++.+.+.
T Consensus         5 Kv~lvG~~~vGKTsLi~~~~~~   26 (172)
T d2g3ya1           5 RVVLIGEQGVGKSTLANIFAGV   26 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3789999999999999999874

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.83  E-value=0.0019  Score=50.74  Aligned_cols=20  Identities=30%  Similarity=0.670  Sum_probs=18.0

Q ss_pred             EEEECCCCCcHHHHHHHHhC
Q 022663           45 CLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        45 ~~liG~NGsGKSTLlk~i~G   64 (294)
                      ++|+|..|+|||||++.+++
T Consensus         5 v~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           5 VIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999987764

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.82  E-value=0.0023  Score=54.59  Aligned_cols=20  Identities=25%  Similarity=0.291  Sum_probs=18.3

Q ss_pred             EEEEECCCCCcHHHHHHHHh
Q 022663           44 RCLLVGANGSGKTTLLKILA   63 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~   63 (294)
                      ++||-|+.|||||||.+.|.
T Consensus        29 iIGi~G~qGSGKSTl~~~l~   48 (286)
T d1odfa_          29 FIFFSGPQGSGKSFTSIQIY   48 (286)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHH
Confidence            78999999999999998775

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.81  E-value=0.002  Score=49.73  Aligned_cols=21  Identities=24%  Similarity=0.537  Sum_probs=18.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 022663           44 RCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G   64 (294)
                      .++|+|..|+|||||++-+.+
T Consensus         5 Ki~lvG~~~vGKTsLi~r~~~   25 (167)
T d1kaoa_           5 KVVVLGSGGVGKSALTVQFVT   25 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999988865

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.81  E-value=0.0022  Score=49.73  Aligned_cols=21  Identities=33%  Similarity=0.661  Sum_probs=18.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 022663           44 RCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G   64 (294)
                      .++|+|+.|+|||||++.+++
T Consensus         7 Ki~lvG~~~vGKTsLi~~l~~   27 (171)
T d2ew1a1           7 KIVLIGNAGVGKTCLVRRFTQ   27 (171)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            388999999999999998875

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=95.80  E-value=0.0019  Score=52.95  Aligned_cols=21  Identities=38%  Similarity=0.517  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 022663           44 RCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G   64 (294)
                      ++||+|...||||||++.|.+
T Consensus         7 ~IaIiGh~d~GKSTL~~~L~~   27 (227)
T d1g7sa4           7 IVSVLGHVDHGKTTLLDHIRG   27 (227)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCccHHHHHHHHHh
Confidence            699999999999999999986

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.79  E-value=0.003  Score=49.07  Aligned_cols=20  Identities=30%  Similarity=0.632  Sum_probs=17.5

Q ss_pred             EEEECCCCCcHHHHHHHHhC
Q 022663           45 CLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        45 ~~liG~NGsGKSTLlk~i~G   64 (294)
                      ++|+|+.|+|||||++.+.+
T Consensus         9 I~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           9 VILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            78999999999999976653

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.79  E-value=0.0022  Score=52.09  Aligned_cols=54  Identities=17%  Similarity=0.237  Sum_probs=32.2

Q ss_pred             CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHH-HhhhceEEEe
Q 022663          168 PFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGL-ETWATHLAYI  224 (294)
Q Consensus       168 ~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~-~~~~d~v~~l  224 (294)
                      ..+++|+||.- ++....+..+...+.+.  .....+++++++..-+ ..+-.|+..+
T Consensus       101 ~~kviiiDe~d-~~~~~~~~~ll~~~e~~--~~~~~~i~~~~~~~~i~~~l~sr~~~i  155 (224)
T d1sxjb2         101 KHKIVILDEAD-SMTAGAQQALRRTMELY--SNSTRFAFACNQSNKIIEPLQSQCAIL  155 (224)
T ss_dssp             CCEEEEEESGG-GSCHHHHHTTHHHHHHT--TTTEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred             ceEEEEEeccc-ccchhHHHHHhhhcccc--ccceeeeeccCchhhhhhHHHHHHHHh
Confidence            35799999854 55566666666666543  2345677888777543 2334444444

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.74  E-value=0.002  Score=49.57  Aligned_cols=21  Identities=24%  Similarity=0.463  Sum_probs=18.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 022663           44 RCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G   64 (294)
                      .++|+|..|+|||||++.+.+
T Consensus         2 Kv~vvG~~~vGKTsLi~r~~~   22 (164)
T d1yzqa1           2 KLVFLGEQSVGKTSLITRFMY   22 (164)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999998875

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.74  E-value=0.0028  Score=48.93  Aligned_cols=21  Identities=24%  Similarity=0.528  Sum_probs=18.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 022663           44 RCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G   64 (294)
                      .++|+|..|+|||||++-+..
T Consensus         6 Ki~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           6 KVCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999988864

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=95.71  E-value=0.0022  Score=54.64  Aligned_cols=31  Identities=39%  Similarity=0.521  Sum_probs=27.4

Q ss_pred             eeeEEEeCCCEEEEECCCCCcHHHHHHHHhC
Q 022663           34 DFNLGISPGSRCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        34 ~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G   64 (294)
                      |.=+.|.+|+..+|+|+.|+|||||+..|+-
T Consensus        35 D~l~PigrGQr~~I~g~~g~GKT~l~~~i~~   65 (289)
T d1xpua3          35 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQ   65 (289)
T ss_dssp             HHHSCCBTTCEEEEEECSSSSHHHHHHHHHH
T ss_pred             eecccccCCCeeeEeCCCCCCHHHHHHHHHH
Confidence            3446889999999999999999999998875

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.71  E-value=0.0023  Score=49.37  Aligned_cols=20  Identities=30%  Similarity=0.620  Sum_probs=18.1

Q ss_pred             EEEECCCCCcHHHHHHHHhC
Q 022663           45 CLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        45 ~~liG~NGsGKSTLlk~i~G   64 (294)
                      ++|+|..|+|||||++.+.+
T Consensus         7 ivlvG~~~vGKTsli~~~~~   26 (166)
T d1z0fa1           7 YIIIGDMGVGKSCLLHQFTE   26 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999987764

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.68  E-value=0.003  Score=48.42  Aligned_cols=20  Identities=25%  Similarity=0.438  Sum_probs=18.0

Q ss_pred             EEEECCCCCcHHHHHHHHhC
Q 022663           45 CLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        45 ~~liG~NGsGKSTLlk~i~G   64 (294)
                      ++|+|..|+|||||++.+.+
T Consensus         5 v~liG~~~vGKTsLl~~~~~   24 (165)
T d1z06a1           5 IIVIGDSNVGKTCLTYRFCA   24 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999987764

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=95.65  E-value=0.002  Score=50.07  Aligned_cols=21  Identities=43%  Similarity=0.604  Sum_probs=19.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 022663           44 RCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G   64 (294)
                      .+.|+|++|+|||||++.+++
T Consensus        14 kIvlvG~~~vGKTSli~rl~~   34 (173)
T d1e0sa_          14 RILMLGLDAAGKTTILYKLKL   34 (173)
T ss_dssp             EEEEEEETTSSHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            477999999999999999976

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.65  E-value=0.0027  Score=49.45  Aligned_cols=21  Identities=33%  Similarity=0.545  Sum_probs=18.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 022663           44 RCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G   64 (294)
                      .++|+|.+|+|||||++.+.+
T Consensus         4 KivvvG~~~vGKTsLi~~~~~   24 (177)
T d1kmqa_           4 KLVIVGDGACGKTCLLIVNSK   24 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999988764

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.63  E-value=0.0026  Score=49.11  Aligned_cols=20  Identities=30%  Similarity=0.441  Sum_probs=17.9

Q ss_pred             EEEECCCCCcHHHHHHHHhC
Q 022663           45 CLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        45 ~~liG~NGsGKSTLlk~i~G   64 (294)
                      ++|+|..|+|||||++.+.+
T Consensus         6 ivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           6 VVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            68999999999999997764

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=95.63  E-value=0.0034  Score=51.59  Aligned_cols=24  Identities=38%  Similarity=0.476  Sum_probs=21.2

Q ss_pred             CEEEEECCCCCcHHHHHHHHhCCc
Q 022663           43 SRCLLVGANGSGKTTLLKILAGKH   66 (294)
Q Consensus        43 e~~~liG~NGsGKSTLlk~i~G~~   66 (294)
                      ..+.|.||.|+||||+++.|+-.+
T Consensus        44 ~~lll~GppGtGKT~l~~~l~~~l   67 (276)
T d1fnna2          44 PRATLLGRPGTGKTVTLRKLWELY   67 (276)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHHH
Confidence            578999999999999999998643

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.62  E-value=0.0023  Score=52.58  Aligned_cols=44  Identities=14%  Similarity=0.260  Sum_probs=30.9

Q ss_pred             cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhH
Q 022663          167 HPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDG  213 (294)
Q Consensus       167 ~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~  213 (294)
                      .+..++|+||.-. |.......+.+.+.+..  ....+|++|++.+.
T Consensus       130 ~~~~iiiide~d~-l~~~~~~~l~~~~e~~~--~~~~~Il~tn~~~~  173 (252)
T d1sxje2         130 HRYKCVIINEANS-LTKDAQAALRRTMEKYS--KNIRLIMVCDSMSP  173 (252)
T ss_dssp             -CCEEEEEECTTS-SCHHHHHHHHHHHHHST--TTEEEEEEESCSCS
T ss_pred             CCceEEEeccccc-cccccchhhhccccccc--ccccceeeeccccc
Confidence            3567999999854 77877777777775432  24567899998763

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.61  E-value=0.0026  Score=49.66  Aligned_cols=20  Identities=35%  Similarity=0.682  Sum_probs=18.4

Q ss_pred             EEEECCCCCcHHHHHHHHhC
Q 022663           45 CLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        45 ~~liG~NGsGKSTLlk~i~G   64 (294)
                      ++++|..|+|||||++.+.+
T Consensus        10 i~vvG~~~vGKTsli~~l~~   29 (177)
T d1x3sa1          10 ILIIGESGVGKSSLLLRFTD   29 (177)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998875

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.57  E-value=0.003  Score=51.25  Aligned_cols=54  Identities=15%  Similarity=0.188  Sum_probs=33.8

Q ss_pred             CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHh-hhceEEEe
Q 022663          168 PFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLET-WATHLAYI  224 (294)
Q Consensus       168 ~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~-~~d~v~~l  224 (294)
                      +.+++++||- ..+.......++..|.+..  ....+++++++...+.. +-.|+..+
T Consensus        99 ~~kiiiiDe~-d~~~~~~~~~Ll~~le~~~--~~~~~~~~~~~~~~i~~~i~sr~~~i  153 (227)
T d1sxjc2          99 GFKLIILDEA-DAMTNAAQNALRRVIERYT--KNTRFCVLANYAHKLTPALLSQCTRF  153 (227)
T ss_dssp             SCEEEEETTG-GGSCHHHHHHHHHHHHHTT--TTEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred             CeEEEEEecc-ccchhhHHHHHHHHhhhcc--cceeeccccCcHHHhHHHHHHHHhhh
Confidence            3469999996 4677778888888876542  24556777776544322 33444433

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=95.56  E-value=0.0032  Score=54.61  Aligned_cols=24  Identities=29%  Similarity=0.448  Sum_probs=21.1

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhC
Q 022663           41 PGSRCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        41 ~Ge~~~liG~NGsGKSTLlk~i~G   64 (294)
                      ..-++||.||-|||||||+..+..
T Consensus        50 ~~~~igitG~pGaGKSTli~~l~~   73 (323)
T d2qm8a1          50 RAIRVGITGVPGVGKSTTIDALGS   73 (323)
T ss_dssp             CSEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CceEEeeeCCCCCCHHHHHHHHHH
Confidence            456799999999999999998874

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=95.49  E-value=0.0059  Score=48.17  Aligned_cols=32  Identities=28%  Similarity=0.283  Sum_probs=25.5

Q ss_pred             ceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHh
Q 022663           31 LFYDFNLGISPGSRCLLVGANGSGKTTLLKILA   63 (294)
Q Consensus        31 iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~   63 (294)
                      .++...+.+ .|.-+.|.|++|+|||||.-.+.
T Consensus         5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~   36 (177)
T d1knxa2           5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLI   36 (177)
T ss_dssp             EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHH
T ss_pred             eEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHH
Confidence            455556666 78889999999999999986654

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=95.49  E-value=0.0071  Score=47.63  Aligned_cols=32  Identities=25%  Similarity=0.297  Sum_probs=24.1

Q ss_pred             ceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHh
Q 022663           31 LFYDFNLGISPGSRCLLVGANGSGKTTLLKILA   63 (294)
Q Consensus        31 iL~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~   63 (294)
                      .++..-+.+ .|.-+.|.|++|+|||||.-.+.
T Consensus         4 ~lH~~~v~~-~g~gvl~~G~sG~GKStlal~l~   35 (176)
T d1kkma_           4 SMHGVLVDI-YGLGVLITGDSGVGKSETALELV   35 (176)
T ss_dssp             EEEEEEEEE-TTEEEEEECCTTSCHHHHHHHHH
T ss_pred             eEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHH
Confidence            455545544 67789999999999999876654

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.43  E-value=0.0025  Score=49.56  Aligned_cols=21  Identities=43%  Similarity=0.642  Sum_probs=18.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 022663           44 RCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G   64 (294)
                      .++|+|+.|+|||||++.+++
T Consensus         5 Ki~vvG~~~vGKTsli~~~~~   25 (170)
T d1i2ma_           5 KLVLVGDGGTGKTTFVKRHLT   25 (170)
T ss_dssp             EEEEEECTTSSHHHHHHTTC-
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            488999999999999998765

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.43  E-value=0.0036  Score=49.66  Aligned_cols=20  Identities=40%  Similarity=0.665  Sum_probs=18.2

Q ss_pred             EEEECCCCCcHHHHHHHHhC
Q 022663           45 CLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        45 ~~liG~NGsGKSTLlk~i~G   64 (294)
                      ++|+|+.|+|||||++.+.+
T Consensus         9 ivvvG~~~vGKTsli~~l~~   28 (194)
T d2bcgy1           9 LLLIGNSGVGKSCLLLRFSD   28 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHhh
Confidence            88999999999999997764

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.43  E-value=0.0033  Score=48.57  Aligned_cols=21  Identities=19%  Similarity=0.477  Sum_probs=18.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 022663           44 RCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G   64 (294)
                      .++|+|..|+|||||++-+.+
T Consensus         5 Ki~vvG~~~vGKTsLi~~~~~   25 (170)
T d1ek0a_           5 KLVLLGEAAVGKSSIVLRFVS   25 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999997654

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.42  E-value=0.0043  Score=47.95  Aligned_cols=21  Identities=24%  Similarity=0.438  Sum_probs=18.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 022663           44 RCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G   64 (294)
                      .++|+|+.|+|||||++-+.+
T Consensus         4 Ki~lvG~~~vGKTsli~r~~~   24 (168)
T d2atva1           4 KLAIFGRAGVGKSALVVRFLT   24 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            378999999999999988875

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.41  E-value=0.0039  Score=48.46  Aligned_cols=21  Identities=29%  Similarity=0.510  Sum_probs=18.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 022663           44 RCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G   64 (294)
                      .++|+|..|+|||||++-+.+
T Consensus         8 Kv~lvG~~~vGKTsLi~r~~~   28 (173)
T d2fn4a1           8 KLVVVGGGGVGKSALTIQFIQ   28 (173)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999987764

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.40  E-value=0.0031  Score=48.95  Aligned_cols=20  Identities=35%  Similarity=0.669  Sum_probs=18.3

Q ss_pred             EEEECCCCCcHHHHHHHHhC
Q 022663           45 CLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        45 ~~liG~NGsGKSTLlk~i~G   64 (294)
                      ++|+|..|+|||||++.+.+
T Consensus         8 I~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           8 FLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            88999999999999998764

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.39  E-value=0.0043  Score=48.62  Aligned_cols=21  Identities=38%  Similarity=0.680  Sum_probs=18.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 022663           44 RCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G   64 (294)
                      .++|+|..|+|||||++.+.+
T Consensus         7 KivviG~~~vGKTsli~~~~~   27 (183)
T d1mh1a_           7 KCVVVGDGAVGKTCLLISYTT   27 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            489999999999999987764

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.38  E-value=0.0044  Score=47.87  Aligned_cols=21  Identities=24%  Similarity=0.491  Sum_probs=18.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 022663           44 RCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G   64 (294)
                      .++++|..|+|||||++-+.+
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~   28 (170)
T d1r2qa_           8 KLVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999988874

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.29  E-value=0.004  Score=48.25  Aligned_cols=21  Identities=29%  Similarity=0.474  Sum_probs=18.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 022663           44 RCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G   64 (294)
                      .++++|..|+|||||++.+.+
T Consensus         6 Ki~lvG~~~vGKTsll~~~~~   26 (169)
T d1x1ra1           6 KLVVVGDGGVGKSALTIQFFQ   26 (169)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            367999999999999998765

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.29  E-value=0.0047  Score=48.66  Aligned_cols=20  Identities=50%  Similarity=0.758  Sum_probs=18.0

Q ss_pred             EEEEECCCCCcHHHHHHHHh
Q 022663           44 RCLLVGANGSGKTTLLKILA   63 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~   63 (294)
                      .+.|+|.+|+|||||++-+.
T Consensus         4 KivllG~~~vGKTsll~r~~   23 (200)
T d1zcba2           4 KILLLGAGESGKSTFLKQMR   23 (200)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            47899999999999999884

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.28  E-value=0.004  Score=52.80  Aligned_cols=23  Identities=39%  Similarity=0.546  Sum_probs=21.2

Q ss_pred             CEEEEECCCCCcHHHHHHHHhCC
Q 022663           43 SRCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        43 e~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      -+++|+||-++||||||+.|.|.
T Consensus        33 ~vvsi~G~~~sGKS~llN~l~~~   55 (277)
T d1f5na2          33 VVVAIVGLYRTGKSYLMNKLAGK   55 (277)
T ss_dssp             EEEEEEEBTTSSHHHHHHHHTTC
T ss_pred             EEEEEECCCCCCHHHHHHHHcCC
Confidence            48999999999999999999984

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.26  E-value=0.0029  Score=49.13  Aligned_cols=20  Identities=40%  Similarity=0.610  Sum_probs=8.6

Q ss_pred             EEEECCCCCcHHHHHHHHhC
Q 022663           45 CLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        45 ~~liG~NGsGKSTLlk~i~G   64 (294)
                      ++|+|..|+|||||++.+++
T Consensus         9 i~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           9 LLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEECCCCC-----------
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            88999999999999987765

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=95.25  E-value=0.0049  Score=50.42  Aligned_cols=20  Identities=30%  Similarity=0.398  Sum_probs=19.0

Q ss_pred             EEEEECCCCCcHHHHHHHHh
Q 022663           44 RCLLVGANGSGKTTLLKILA   63 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~   63 (294)
                      ++||.|+-||||||+.+.|.
T Consensus         3 iIgiTG~igSGKsTva~~l~   22 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIM   22 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            79999999999999999995

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.18  E-value=0.0052  Score=49.97  Aligned_cols=20  Identities=50%  Similarity=0.762  Sum_probs=18.0

Q ss_pred             EEEEECCCCCcHHHHHHHHh
Q 022663           44 RCLLVGANGSGKTTLLKILA   63 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~   63 (294)
                      .+.|+|.+|+|||||++-+.
T Consensus         8 KilllG~~~vGKTsll~~~~   27 (221)
T d1azta2           8 RLLLLGAGESGKSTIVKQMR   27 (221)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            57899999999999998874

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.18  E-value=0.0048  Score=51.55  Aligned_cols=31  Identities=29%  Similarity=0.468  Sum_probs=24.1

Q ss_pred             eeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCC
Q 022663           33 YDFNLGISPGSRCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        33 ~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      +...+..+.|  +.|.||.|+|||+|.+.++..
T Consensus        31 ~~~g~~~~~g--iLL~GppGtGKT~l~~ala~~   61 (258)
T d1e32a2          31 KAIGVKPPRG--ILLYGPPGTGKTLIARAVANE   61 (258)
T ss_dssp             HHCCCCCCCE--EEEECCTTSSHHHHHHHHHHH
T ss_pred             HhCCCCCCce--eEEecCCCCCchHHHHHHHHH
Confidence            3334444555  889999999999999999973

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=95.11  E-value=0.0059  Score=47.13  Aligned_cols=21  Identities=29%  Similarity=0.529  Sum_probs=18.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 022663           44 RCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G   64 (294)
                      .++|+|..|+|||||++.+.+
T Consensus         6 KivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           6 KVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            588999999999999998754

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.10  E-value=0.006  Score=46.90  Aligned_cols=21  Identities=24%  Similarity=0.515  Sum_probs=18.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 022663           44 RCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G   64 (294)
                      .++|+|..|+|||||++-+.+
T Consensus         5 KivvvG~~~vGKTsli~r~~~   25 (167)
T d1c1ya_           5 KLVVLGSGGVGKSALTVQFVQ   25 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            378999999999999998764

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.08  E-value=0.0055  Score=48.12  Aligned_cols=21  Identities=43%  Similarity=0.743  Sum_probs=18.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 022663           44 RCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G   64 (294)
                      .++|+|..|+|||||++.++.
T Consensus        11 Ki~lvG~~~vGKTsLi~r~~~   31 (185)
T d2atxa1          11 KCVVVGDGAVGKTCLLMSYAN   31 (185)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhh
Confidence            389999999999999987653

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.07  E-value=0.0062  Score=46.98  Aligned_cols=20  Identities=45%  Similarity=0.674  Sum_probs=17.7

Q ss_pred             EEEECCCCCcHHHHHHHHhC
Q 022663           45 CLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        45 ~~liG~NGsGKSTLlk~i~G   64 (294)
                      ++|+|+.|+|||||++.+.+
T Consensus         9 i~vvG~~~vGKTsli~~~~~   28 (170)
T d2g6ba1           9 VMLVGDSGVGKTCLLVRFKD   28 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            89999999999999996643

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.05  E-value=0.0051  Score=48.14  Aligned_cols=21  Identities=29%  Similarity=0.431  Sum_probs=18.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 022663           44 RCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G   64 (294)
                      .++++|..|+|||||++-+.+
T Consensus         7 ki~vlG~~~vGKTsLi~~~~~   27 (175)
T d2bmja1           7 RLGVLGDARSGKSSLIHRFLT   27 (175)
T ss_dssp             EEEEECCTTTTHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            478999999999999997765

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.01  E-value=0.0058  Score=47.79  Aligned_cols=20  Identities=40%  Similarity=0.732  Sum_probs=17.3

Q ss_pred             EEEEECCCCCcHHHHHHHHh
Q 022663           44 RCLLVGANGSGKTTLLKILA   63 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~   63 (294)
                      .++|+|..|+|||||++-+.
T Consensus         4 KivliG~~~vGKTsli~r~~   23 (179)
T d1m7ba_           4 KIVVVGDSQCGKTALLHVFA   23 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHH
Confidence            47899999999999997554

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=94.89  E-value=0.004  Score=51.47  Aligned_cols=22  Identities=36%  Similarity=0.372  Sum_probs=18.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      ++.|.||.|+||||+++.++-.
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHH
Confidence            3556799999999999999864

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=94.73  E-value=0.0053  Score=55.49  Aligned_cols=23  Identities=35%  Similarity=0.560  Sum_probs=21.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhCCc
Q 022663           44 RCLLVGANGSGKTTLLKILAGKH   66 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~~   66 (294)
                      =+.++||.|||||-|.|.|++.+
T Consensus        51 NILliGPTGvGKTlLAr~LAk~l   73 (443)
T d1g41a_          51 NILMIGPTGVGKTEIARRLAKLA   73 (443)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHT
T ss_pred             cEEEECCCCCCHHHHHHHHHHHh
Confidence            58999999999999999999854

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.71  E-value=0.0077  Score=47.43  Aligned_cols=21  Identities=38%  Similarity=0.680  Sum_probs=18.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 022663           44 RCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G   64 (294)
                      .++|+|..|+|||||++.+.+
T Consensus         5 KvvllG~~~vGKTSli~r~~~   25 (191)
T d2ngra_           5 KCVVVGDGAVGKTCLLISYTT   25 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            488999999999999977654

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=94.65  E-value=0.0075  Score=51.67  Aligned_cols=22  Identities=23%  Similarity=0.232  Sum_probs=19.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      -+||+|..-+||||||+.|+|.
T Consensus         2 ~v~lvG~pn~GKStlfn~lt~~   23 (319)
T d1wxqa1           2 EIGVVGKPNVGKSTFFSAATLV   23 (319)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC-
T ss_pred             cEeEECCCCCCHHHHHHHHHCC
Confidence            3899999999999999999984

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.62  E-value=0.0083  Score=48.85  Aligned_cols=22  Identities=32%  Similarity=0.484  Sum_probs=20.1

Q ss_pred             CEEEEECCCCCcHHHHHHHHhC
Q 022663           43 SRCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        43 e~~~liG~NGsGKSTLlk~i~G   64 (294)
                      .+++|=|+=||||||+++.|+-
T Consensus         3 k~IviEG~~GsGKST~~~~L~~   24 (241)
T d2ocpa1           3 RRLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHH
Confidence            4789999999999999999984

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=94.58  E-value=0.0078  Score=51.19  Aligned_cols=23  Identities=30%  Similarity=0.696  Sum_probs=20.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhCCc
Q 022663           44 RCLLVGANGSGKTTLLKILAGKH   66 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~~   66 (294)
                      .++++|.-.||||||++.|.|.-
T Consensus        26 ~ivVvG~~ssGKSSliNaLlG~~   48 (306)
T d1jwyb_          26 QIVVVGSQSSGKSSVLENIVGRD   48 (306)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTSC
T ss_pred             eEEEEeCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999954

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=94.58  E-value=0.0093  Score=47.24  Aligned_cols=22  Identities=45%  Similarity=0.498  Sum_probs=20.1

Q ss_pred             EEEECCCCCcHHHHHHHHhCCc
Q 022663           45 CLLVGANGSGKTTLLKILAGKH   66 (294)
Q Consensus        45 ~~liG~NGsGKSTLlk~i~G~~   66 (294)
                      +||+|.=.+|||||++.|+|..
T Consensus         8 IaiiGhvd~GKSTL~~~L~g~~   29 (195)
T d1kk1a3           8 IGMVGHVDHGKTTLTKALTGVW   29 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHHTCC
T ss_pred             EEEEeccCCcHHHHHHHHHhhh
Confidence            7999999999999999999843

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.57  E-value=0.0098  Score=50.28  Aligned_cols=23  Identities=26%  Similarity=0.616  Sum_probs=20.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhCCc
Q 022663           44 RCLLVGANGSGKTTLLKILAGKH   66 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~~   66 (294)
                      .++++|.-.||||||++.|+|.-
T Consensus        28 ~ivvvG~~SsGKSsliNaLlg~~   50 (299)
T d2akab1          28 QIAVVGGQSAGKSSVLENFVGRD   50 (299)
T ss_dssp             EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred             eEEEEcCCCCCHHHHHHHHhCCC
Confidence            38899999999999999999954

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=94.43  E-value=0.01  Score=51.08  Aligned_cols=23  Identities=30%  Similarity=0.453  Sum_probs=20.5

Q ss_pred             CEEEEECCCCCcHHHHHHHHhCC
Q 022663           43 SRCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        43 e~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      ..+.++||+|+|||.|.+.|+-.
T Consensus        53 ~~~lf~Gp~GvGKT~lak~la~~   75 (315)
T d1r6bx3          53 GSFLFAGPTGVGKTEVTVQLSKA   75 (315)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCcchhHHHHHHHHhh
Confidence            36889999999999999999864

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=94.38  E-value=0.0072  Score=51.44  Aligned_cols=22  Identities=23%  Similarity=0.463  Sum_probs=20.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 022663           44 RCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .+||||..-|||||||+.|++.
T Consensus        12 kiGivG~Pn~GKSTlfnalT~~   33 (296)
T d1ni3a1          12 KTGIVGMPNVGKSTFFRAITKS   33 (296)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            4999999999999999999874

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=94.34  E-value=0.016  Score=45.21  Aligned_cols=30  Identities=23%  Similarity=0.292  Sum_probs=22.3

Q ss_pred             eeeeeEEEeCCCEEEEECCCCCcHHHHHHHH
Q 022663           32 FYDFNLGISPGSRCLLVGANGSGKTTLLKIL   62 (294)
Q Consensus        32 L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i   62 (294)
                      ++..-+. -.|.-+.|.|++|+|||||.-.+
T Consensus         6 ~H~~~v~-~~g~gvli~G~sg~GKS~la~~l   35 (169)
T d1ko7a2           6 LHGVLVD-VYGVGVLITGDSGIGKSETALEL   35 (169)
T ss_dssp             EESEEEE-ETTEEEEEEESTTSSHHHHHHHH
T ss_pred             EEEEEEE-ECCEEEEEEeCCCCCHHHHHHHH
Confidence            4443333 46788999999999999987554

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.32  E-value=0.012  Score=45.74  Aligned_cols=21  Identities=43%  Similarity=0.626  Sum_probs=18.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 022663           44 RCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G   64 (294)
                      .++|+|..|+|||||++-+..
T Consensus         4 KivllG~~~vGKTsl~~r~~~   24 (195)
T d1svsa1           4 KLLLLGAGESGKSTIVKQMKI   24 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhh
Confidence            478999999999999988864

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.23  E-value=0.012  Score=49.56  Aligned_cols=30  Identities=33%  Similarity=0.441  Sum_probs=26.1

Q ss_pred             eeeEEEeCCCEEEEECCCCCcHHHHHHHHh
Q 022663           34 DFNLGISPGSRCLLVGANGSGKTTLLKILA   63 (294)
Q Consensus        34 ~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~   63 (294)
                      |.=+.+-+|+..+|+|+.|+|||||+..|+
T Consensus        60 D~l~pigkGQr~~If~~~g~GKt~l~~~i~   89 (276)
T d2jdid3          60 DLLAPYAKGGKIGLFGGAGVGKTVLIMELI   89 (276)
T ss_dssp             HHHSCEETTCEEEEEECTTSSHHHHHHHHH
T ss_pred             eeeccccCCCEEEeeCCCCCCHHHHHHHHH
Confidence            344689999999999999999999987775

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.06  E-value=0.013  Score=45.69  Aligned_cols=21  Identities=38%  Similarity=0.597  Sum_probs=18.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 022663           44 RCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G   64 (294)
                      .+.|+|..|+|||||++-+..
T Consensus         4 Kiv~lG~~~vGKTsll~r~~~   24 (200)
T d2bcjq2           4 KLLLLGTGESGKSTFIKQMRI   24 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            478999999999999998864

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=93.99  E-value=0.0049  Score=53.21  Aligned_cols=26  Identities=31%  Similarity=0.415  Sum_probs=22.6

Q ss_pred             CCEEEEECCCCCcHHHHHHHHhCCcc
Q 022663           42 GSRCLLVGANGSGKTTLLKILAGKHM   67 (294)
Q Consensus        42 Ge~~~liG~NGsGKSTLlk~i~G~~~   67 (294)
                      |.-+.|+||-|+|||||+|.++++++
T Consensus        28 ~h~vLl~G~pG~GKT~lar~~~~iLp   53 (333)
T d1g8pa_          28 IGGVLVFGDRGTGKSTAVRALAALLP   53 (333)
T ss_dssp             GCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred             CCeEEEECCCCccHHHHHHHHHHhCC
Confidence            34689999999999999999998653

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=93.94  E-value=0.015  Score=50.95  Aligned_cols=29  Identities=34%  Similarity=0.298  Sum_probs=25.9

Q ss_pred             EEeCCCEEEEECCCCCcHHHHHHHHhCCc
Q 022663           38 GISPGSRCLLVGANGSGKTTLLKILAGKH   66 (294)
Q Consensus        38 ~i~~Ge~~~liG~NGsGKSTLlk~i~G~~   66 (294)
                      .++++.++.+.||.|+|||||.+.|++..
T Consensus       150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~  178 (362)
T d1svma_         150 NIPKKRYWLFKGPIDSGKTTLAAALLELC  178 (362)
T ss_dssp             CCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCCcCeEEEECCCCCCHHHHHHHHHHHc
Confidence            55788899999999999999999999743

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.84  E-value=0.012  Score=47.88  Aligned_cols=21  Identities=48%  Similarity=0.632  Sum_probs=18.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 022663           44 RCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G   64 (294)
                      ++.|.|.=|||||||++-+..
T Consensus         5 v~iitGFLGaGKTTll~~lL~   25 (222)
T d1nija1           5 VTLLTGFLGAGKTTLLRHILN   25 (222)
T ss_dssp             EEEEEESSSSSCHHHHHHHHH
T ss_pred             EEEEeeCCCCCHHHHHHHHHh
Confidence            688999999999999988864

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=93.63  E-value=0.015  Score=48.74  Aligned_cols=19  Identities=58%  Similarity=0.723  Sum_probs=17.6

Q ss_pred             EEEECCCCCcHHHHHHHHh
Q 022663           45 CLLVGANGSGKTTLLKILA   63 (294)
Q Consensus        45 ~~liG~NGsGKSTLlk~i~   63 (294)
                      ++|+|+.|+|||||...|.
T Consensus         5 v~iiGh~~~GKTtL~e~ll   23 (267)
T d2dy1a2           5 VALVGHAGSGKTTLTEALL   23 (267)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEEcCCCCcHHHHHHHHH
Confidence            7999999999999999883

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=93.62  E-value=0.015  Score=48.80  Aligned_cols=21  Identities=38%  Similarity=0.686  Sum_probs=19.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 022663           44 RCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G   64 (294)
                      .+||||-.-+||||||+.|++
T Consensus         4 ~~GivG~Pn~GKSTlf~~lt~   24 (278)
T d1jala1           4 KCGIVGLPNVGKSTLFNALTK   24 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHC
Confidence            589999999999999999985

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.49  E-value=0.019  Score=46.95  Aligned_cols=54  Identities=24%  Similarity=0.225  Sum_probs=36.0

Q ss_pred             CCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHH-HhhhceEEEee
Q 022663          169 FKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGL-ETWATHLAYIQ  225 (294)
Q Consensus       169 p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~-~~~~d~v~~l~  225 (294)
                      .+++|+||.= .|....+..++..|.+.  ..+..+|++|++..-+ ..+-.|+.++.
T Consensus       116 ~kviiIde~d-~l~~~~q~~Llk~lE~~--~~~~~~il~tn~~~~i~~~i~SRc~~i~  170 (239)
T d1njfa_         116 FKVYLIDEVH-MLSRHSFNALLKTLEEP--PEHVKFLLATTDPQKLPVTILSRCLQFH  170 (239)
T ss_dssp             SEEEEEETGG-GSCHHHHHHHHHHHHSC--CTTEEEEEEESCGGGSCHHHHTTSEEEE
T ss_pred             CEEEEEECcc-cCCHHHHHHHHHHHhcC--CCCeEEEEEcCCccccChhHhhhhcccc
Confidence            4699999985 48888877777777542  1356789999887644 33445554443

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.34  E-value=0.022  Score=45.69  Aligned_cols=55  Identities=18%  Similarity=0.072  Sum_probs=35.5

Q ss_pred             CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHH-HhhhceEEEee
Q 022663          168 PFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGL-ETWATHLAYIQ  225 (294)
Q Consensus       168 ~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~-~~~~d~v~~l~  225 (294)
                      +.+++|+||. -.|...++..+++.|.+..  .+..+|++|++..-+ ..+-.|+..+.
T Consensus       108 ~~kviIide~-d~l~~~a~n~Llk~lEep~--~~~~fIl~t~~~~~ll~tI~SRc~~i~  163 (207)
T d1a5ta2         108 GAKVVWVTDA-ALLTDAAANALLKTLEEPP--AETWFFLATREPERLLATLRSRCRLHY  163 (207)
T ss_dssp             SCEEEEESCG-GGBCHHHHHHHHHHHTSCC--TTEEEEEEESCGGGSCHHHHTTSEEEE
T ss_pred             ccceEEechh-hhhhhhhhHHHHHHHHhhc--ccceeeeeecChhhhhhhhcceeEEEe
Confidence            4779999975 4466777777777775431  245678889988643 33556655443

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=93.25  E-value=0.022  Score=45.58  Aligned_cols=20  Identities=35%  Similarity=0.298  Sum_probs=18.3

Q ss_pred             EEEECCCCCcHHHHHHHHhC
Q 022663           45 CLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        45 ~~liG~NGsGKSTLlk~i~G   64 (294)
                      +||+|.-++|||||+..|.+
T Consensus         6 i~iiGhvd~GKSTL~~~Ll~   25 (204)
T d2c78a3           6 VGTIGHVDHGKTTLTAALTY   25 (204)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHHH
Confidence            79999999999999999853

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=93.16  E-value=0.021  Score=48.15  Aligned_cols=22  Identities=23%  Similarity=0.259  Sum_probs=19.1

Q ss_pred             EEEECCCCCcHHHHHHHH---hCCc
Q 022663           45 CLLVGANGSGKTTLLKIL---AGKH   66 (294)
Q Consensus        45 ~~liG~NGsGKSTLlk~i---~G~~   66 (294)
                      ++|+|+.|||||||...|   +|.+
T Consensus         9 i~i~gh~~~GKTtL~e~ll~~~g~~   33 (276)
T d2bv3a2           9 IGIAAHIDAGKTTTTERILYYTGRI   33 (276)
T ss_dssp             EEEEECTTSCHHHHHHHHHHHHTSS
T ss_pred             EEEEeCCCCCHHHHHHHHHHhcCcc
Confidence            799999999999999888   4644

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=93.14  E-value=0.023  Score=45.83  Aligned_cols=45  Identities=16%  Similarity=0.280  Sum_probs=32.4

Q ss_pred             ccCCCEEEeeCCCCCC-CHHHHHHHHHHHHHHHHhcCcEEEEEeCCh
Q 022663          166 LHPFKVLLLDEITVDL-DVVARMDLLDFFKDECEQRGATIVYATHIF  211 (294)
Q Consensus       166 ~~~p~iLlLDEPt~gL-D~~~~~~l~~~l~~~~~~~g~tviivsHd~  211 (294)
                      ....++|++|+--.=. +...+..+..++.... +.|+.+|++|...
T Consensus        95 ~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~-~~~~~iiits~~~  140 (213)
T d1l8qa2          95 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLY-LLEKQIILASDRH  140 (213)
T ss_dssp             HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHH-HTTCEEEEEESSC
T ss_pred             HhhccchhhhhhhhhcCchHHHHHHHHHHHHHh-hccceEEEecCCc
Confidence            5689999999863322 4666777888887654 5588888888743

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=93.07  E-value=0.025  Score=47.44  Aligned_cols=22  Identities=27%  Similarity=0.306  Sum_probs=19.8

Q ss_pred             CCEEEEECCCCCcHHHHHHHHh
Q 022663           42 GSRCLLVGANGSGKTTLLKILA   63 (294)
Q Consensus        42 Ge~~~liG~NGsGKSTLlk~i~   63 (294)
                      ..+++|.|.-|.|||||.+.+.
T Consensus        44 ~~~v~I~GmgGiGKTtLA~~v~   65 (277)
T d2a5yb3          44 SFFLFLHGRAGSGKSVIASQAL   65 (277)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHH
Confidence            4589999999999999999875

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=92.63  E-value=0.026  Score=49.94  Aligned_cols=43  Identities=19%  Similarity=0.240  Sum_probs=29.1

Q ss_pred             CEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHh
Q 022663          170 KVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLET  216 (294)
Q Consensus       170 ~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~  216 (294)
                      -++++||--+-.....   +.+++.+ .+++|..+++++.++..+..
T Consensus       278 v~l~lDE~~~~~~~~~---l~~~l~~-~Rk~Gv~~~l~~Qs~~ql~~  320 (433)
T d1e9ra_         278 LWLFIDELASLEKLAS---LADALTK-GRKAGLRVVAGLQSTSQLDD  320 (433)
T ss_dssp             EEEEESCGGGSCBCSS---HHHHHHH-CTTTTEEEEEEESCHHHHHH
T ss_pred             eEEEechHhhhcccHH---HHHHHHH-hCCCCceEEEEeccHHHHHH
Confidence            3688899655444222   4455544 46789999999999877654

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=92.59  E-value=0.033  Score=44.33  Aligned_cols=23  Identities=35%  Similarity=0.463  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhCCc
Q 022663           44 RCLLVGANGSGKTTLLKILAGKH   66 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~~   66 (294)
                      -+||+|.=.+|||||++.|+|..
T Consensus        10 ni~iiGhVd~GKSTL~~~L~~~~   32 (205)
T d2qn6a3          10 NIGVVGHVDHGKTTLVQAITGIW   32 (205)
T ss_dssp             EEEEECSTTSSHHHHHHHHHSCC
T ss_pred             EEEEEEccCCcHHHHHHHHHhhh
Confidence            38999999999999999999854

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=92.19  E-value=0.02  Score=48.23  Aligned_cols=29  Identities=28%  Similarity=0.438  Sum_probs=25.1

Q ss_pred             eeeEEEeCCCEEEEECCCCCcHHHHHHHH
Q 022663           34 DFNLGISPGSRCLLVGANGSGKTTLLKIL   62 (294)
Q Consensus        34 ~vsl~i~~Ge~~~liG~NGsGKSTLlk~i   62 (294)
                      |.=+.|-+|+.++|+|+.|+|||||+..+
T Consensus        59 D~l~pig~GQr~~Ifg~~g~GKt~l~~~~   87 (276)
T d1fx0a3          59 DAMIPVGRGQRELIIGDRQTGKTAVATDT   87 (276)
T ss_dssp             TTTSCCBTTCBCBEEESSSSSHHHHHHHH
T ss_pred             eccccccCCceEeeccCCCCChHHHHHHH
Confidence            44468899999999999999999998754

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=92.13  E-value=0.04  Score=43.83  Aligned_cols=23  Identities=35%  Similarity=0.589  Sum_probs=19.7

Q ss_pred             CEEEEECCCCCcHHHHHHHHhCC
Q 022663           43 SRCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        43 e~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      .-+.|+||.|.|||++..-++-.
T Consensus        44 ~n~lLvG~pGVGKTalv~~LA~r   66 (195)
T d1jbka_          44 NNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEecCCcccHHHHHHHHHH
Confidence            35789999999999999888753

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=92.03  E-value=0.04  Score=46.12  Aligned_cols=22  Identities=45%  Similarity=0.549  Sum_probs=19.4

Q ss_pred             CEEEEECCCCCcHHHHHHHHhC
Q 022663           43 SRCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        43 e~~~liG~NGsGKSTLlk~i~G   64 (294)
                      .-+.||||.|+|||+++.-++-
T Consensus        40 ~n~lLVG~~GvGKTalv~~la~   61 (268)
T d1r6bx2          40 NNPLLVGESGVGKTAIAEGLAW   61 (268)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEECCCCCcHHHHHHHHHH
Confidence            3578999999999999998875

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=92.02  E-value=0.035  Score=47.55  Aligned_cols=24  Identities=42%  Similarity=0.596  Sum_probs=20.6

Q ss_pred             CEEEEECCCCCcHHHHHHHHhCCc
Q 022663           43 SRCLLVGANGSGKTTLLKILAGKH   66 (294)
Q Consensus        43 e~~~liG~NGsGKSTLlk~i~G~~   66 (294)
                      -.+.++||+|+|||.|.+.|+-.+
T Consensus        54 ~~~lf~Gp~G~GKt~lak~la~~l   77 (315)
T d1qvra3          54 GSFLFLGPTGVGKTELAKTLAATL   77 (315)
T ss_dssp             EEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCcchHHHHHHHHHHHh
Confidence            367899999999999999998643

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=91.83  E-value=0.041  Score=48.08  Aligned_cols=26  Identities=42%  Similarity=0.658  Sum_probs=21.0

Q ss_pred             EeCCCEEEEECCCCCcHHHHHHHHhCC
Q 022663           39 ISPGSRCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        39 i~~Ge~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      ++++- +.++||+|+|||-|.|.|+-.
T Consensus        66 ~p~~n-iLfiGPTGvGKTElAk~LA~~   91 (364)
T d1um8a_          66 LSKSN-ILLIGPTGSGKTLMAQTLAKH   91 (364)
T ss_dssp             CCCCC-EEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCcc-eeeeCCCCccHHHHHHHHHhh
Confidence            34554 667899999999999999864

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=91.75  E-value=0.04  Score=46.98  Aligned_cols=20  Identities=40%  Similarity=0.670  Sum_probs=17.9

Q ss_pred             eCCCEEEEECCCCCcHHHHH
Q 022663           40 SPGSRCLLVGANGSGKTTLL   59 (294)
Q Consensus        40 ~~Ge~~~liG~NGsGKSTLl   59 (294)
                      +.|++..+.|.||+|||||-
T Consensus        12 ~~~~~alfFGLSGTGKTTLs   31 (313)
T d2olra1          12 EKGDVAVFFGLSGTGKTTLS   31 (313)
T ss_dssp             TTSCEEEEECSTTSSHHHHH
T ss_pred             CCCCEEEEEccCCCCcccce
Confidence            46899999999999999975

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=91.51  E-value=0.041  Score=47.06  Aligned_cols=19  Identities=42%  Similarity=0.704  Sum_probs=17.2

Q ss_pred             CCCEEEEECCCCCcHHHHH
Q 022663           41 PGSRCLLVGANGSGKTTLL   59 (294)
Q Consensus        41 ~Ge~~~liG~NGsGKSTLl   59 (294)
                      .|++..+.|.||+|||||-
T Consensus        13 ~~~valffGLSGTGKTTLs   31 (318)
T d1j3ba1          13 EGDVAVFFGLSGTGKTTLS   31 (318)
T ss_dssp             TCCEEEEEECTTSCHHHHT
T ss_pred             CCCEEEEEccCCCCccccc
Confidence            5899999999999999974

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=91.50  E-value=0.032  Score=47.11  Aligned_cols=30  Identities=30%  Similarity=0.396  Sum_probs=25.5

Q ss_pred             eeeEEEeCCCEEEEECCCCCcHHHHHHHHh
Q 022663           34 DFNLGISPGSRCLLVGANGSGKTTLLKILA   63 (294)
Q Consensus        34 ~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~   63 (294)
                      |.=+.+-+|+.++|+|+.|+|||||+.-++
T Consensus        60 D~l~pig~GQr~~If~~~g~GKt~ll~~~~   89 (285)
T d2jdia3          60 DSLVPIGRGQRELIIGDRQTGKTSIAIDTI   89 (285)
T ss_dssp             HHHSCCBTTCBCEEEESTTSSHHHHHHHHH
T ss_pred             ecccCccCCCEEEeecCCCCChHHHHHHHH
Confidence            445789999999999999999999986543

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=91.33  E-value=0.046  Score=47.10  Aligned_cols=23  Identities=35%  Similarity=0.515  Sum_probs=19.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhCCc
Q 022663           44 RCLLVGANGSGKTTLLKILAGKH   66 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~~   66 (294)
                      .++|=|+=||||||+++.|+-..
T Consensus         6 rI~IEG~iGsGKTTl~~~La~~l   28 (329)
T d1e2ka_           6 RVYIDGPHGMGKTTTTQLLVALG   28 (329)
T ss_dssp             EEEECSCTTSSHHHHHHHHTC--
T ss_pred             EEEEECCcCCCHHHHHHHHHHHh
Confidence            37889999999999999998643

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=90.83  E-value=0.058  Score=46.13  Aligned_cols=19  Identities=42%  Similarity=0.691  Sum_probs=17.7

Q ss_pred             CCCEEEEECCCCCcHHHHH
Q 022663           41 PGSRCLLVGANGSGKTTLL   59 (294)
Q Consensus        41 ~Ge~~~liG~NGsGKSTLl   59 (294)
                      .|++..+.|-||+|||||-
T Consensus        13 ~gd~alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          13 QGDVTVFFGLSGTGKTTLS   31 (323)
T ss_dssp             TCCEEEEECCTTSSHHHHH
T ss_pred             CCCEEEEEccCCCCcccce
Confidence            6889999999999999997

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=90.77  E-value=0.053  Score=43.01  Aligned_cols=21  Identities=29%  Similarity=0.278  Sum_probs=19.1

Q ss_pred             EEEECCCCCcHHHHHHHHhCC
Q 022663           45 CLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        45 ~~liG~NGsGKSTLlk~i~G~   65 (294)
                      +||+|.-.+|||||++.|.+.
T Consensus         6 i~iiGHvd~GKSTL~~~l~~~   26 (196)
T d1d2ea3           6 VGTIGHVDHGKTTLTAAITKI   26 (196)
T ss_dssp             EEEESSTTSSHHHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHHHH
Confidence            799999999999999999764

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=90.41  E-value=0.074  Score=45.81  Aligned_cols=24  Identities=33%  Similarity=0.441  Sum_probs=20.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhCCcc
Q 022663           44 RCLLVGANGSGKTTLLKILAGKHM   67 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~~~   67 (294)
                      .+.|=|+=||||||+++.|+-.+.
T Consensus         8 rI~iEG~iGsGKSTl~~~L~~~l~   31 (333)
T d1p6xa_           8 RIYLDGVYGIGKSTTGRVMASAAS   31 (333)
T ss_dssp             EEEEECSTTSSHHHHHHHHHSGGG
T ss_pred             EEEEECCccCCHHHHHHHHHHHhc
Confidence            477889999999999999998543

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=90.02  E-value=0.073  Score=42.90  Aligned_cols=19  Identities=32%  Similarity=0.503  Sum_probs=17.4

Q ss_pred             EEEECCCCCcHHHHHHHHh
Q 022663           45 CLLVGANGSGKTTLLKILA   63 (294)
Q Consensus        45 ~~liG~NGsGKSTLlk~i~   63 (294)
                      +|++|.-++|||||+..|.
T Consensus         6 i~viGHVd~GKTTL~~~Ll   24 (224)
T d1jnya3           6 LIVIGHVDHGKSTLVGRLL   24 (224)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEEecCCCCHHHHHHHHH
Confidence            7999999999999998873

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=89.73  E-value=0.061  Score=46.36  Aligned_cols=24  Identities=38%  Similarity=0.379  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhCCcc
Q 022663           44 RCLLVGANGSGKTTLLKILAGKHM   67 (294)
Q Consensus        44 ~~~liG~NGsGKSTLlk~i~G~~~   67 (294)
                      .+.|=|+=||||||+++.|+-.+.
T Consensus         7 rI~IEG~iGsGKSTl~~~L~~~l~   30 (331)
T d1osna_           7 RIYLDGAYGIGKTTAAEEFLHHFA   30 (331)
T ss_dssp             EEEEEESSSSCTTHHHHHHHHTTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHh
Confidence            478899999999999999986443

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=88.79  E-value=0.089  Score=44.10  Aligned_cols=17  Identities=41%  Similarity=0.663  Sum_probs=14.0

Q ss_pred             CEEEEECCCCCcHHHHH
Q 022663           43 SRCLLVGANGSGKTTLL   59 (294)
Q Consensus        43 e~~~liG~NGsGKSTLl   59 (294)
                      ..+.|.|+-||||||.|
T Consensus        25 g~~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          25 GPLLIMAGAGSGKTRVL   41 (318)
T ss_dssp             SCEEEEECTTSCHHHHH
T ss_pred             CCEEEEecCCccHHHHH
Confidence            35778899999999865

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=88.28  E-value=0.15  Score=38.07  Aligned_cols=23  Identities=30%  Similarity=0.371  Sum_probs=19.4

Q ss_pred             CCEEEEECCCCCcHHH-HHHHHhC
Q 022663           42 GSRCLLVGANGSGKTT-LLKILAG   64 (294)
Q Consensus        42 Ge~~~liG~NGsGKST-Llk~i~G   64 (294)
                      |.+..++||=.||||| |++.+-.
T Consensus         2 G~L~~i~GpMfsGKTteLi~~~~~   25 (139)
T d2b8ta1           2 GWIEFITGPMFAGKTAELIRRLHR   25 (139)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHHH
T ss_pred             cEEEEEEccccCHHHHHHHHHHHH
Confidence            6788999999999999 7777643

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=87.98  E-value=0.14  Score=41.26  Aligned_cols=19  Identities=37%  Similarity=0.466  Sum_probs=17.8

Q ss_pred             EEEECCCCCcHHHHHHHHh
Q 022663           45 CLLVGANGSGKTTLLKILA   63 (294)
Q Consensus        45 ~~liG~NGsGKSTLlk~i~   63 (294)
                      ++++|.-.+|||||+..|.
T Consensus        12 i~viGHVd~GKSTL~~~Ll   30 (222)
T d1zunb3          12 FLTCGNVDDGKSTLIGRLL   30 (222)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHH
Confidence            7899999999999999995

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=87.83  E-value=0.12  Score=42.84  Aligned_cols=17  Identities=41%  Similarity=0.878  Sum_probs=14.1

Q ss_pred             CEEEEECCCCCcHHHHH
Q 022663           43 SRCLLVGANGSGKTTLL   59 (294)
Q Consensus        43 e~~~liG~NGsGKSTLl   59 (294)
                      .-+.|+|+-||||||.+
T Consensus        15 ~~~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          15 GPCLVLAGAGSGKTRVI   31 (306)
T ss_dssp             SEEEECCCTTSCHHHHH
T ss_pred             CCEEEEeeCCccHHHHH
Confidence            35789999999999764

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=87.56  E-value=0.055  Score=39.13  Aligned_cols=21  Identities=29%  Similarity=0.357  Sum_probs=17.8

Q ss_pred             EeCCCEEEEECCCCCcHHHHH
Q 022663           39 ISPGSRCLLVGANGSGKTTLL   59 (294)
Q Consensus        39 i~~Ge~~~liG~NGsGKSTLl   59 (294)
                      +++|+.+.|.+|-|||||+..
T Consensus         4 l~~~~~~il~~~tGsGKT~~~   24 (140)
T d1yksa1           4 LKKGMTTVLDFHPGAGKTRRF   24 (140)
T ss_dssp             TSTTCEEEECCCTTSSTTTTH
T ss_pred             HHcCCcEEEEcCCCCChhHHH
Confidence            467999999999999999544

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.54  E-value=0.16  Score=37.00  Aligned_cols=25  Identities=16%  Similarity=0.089  Sum_probs=21.3

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhC
Q 022663           40 SPGSRCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        40 ~~Ge~~~liG~NGsGKSTLlk~i~G   64 (294)
                      ++|=.+.+.|-+|||||||.+.|.-
T Consensus         4 kqgf~i~~tg~~~~gk~~ia~al~~   28 (122)
T d1g8fa3           4 KQGFSIVLGNSLTVSREQLSIALLS   28 (122)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHH
T ss_pred             ccceEEEEeCCCCCCHHHHHHHHHH
Confidence            4566788999999999999999853

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=87.52  E-value=0.16  Score=42.13  Aligned_cols=29  Identities=21%  Similarity=0.294  Sum_probs=24.3

Q ss_pred             EEeCCCEEEEECCCCCcHHHHHHHHhCCc
Q 022663           38 GISPGSRCLLVGANGSGKTTLLKILAGKH   66 (294)
Q Consensus        38 ~i~~Ge~~~liG~NGsGKSTLlk~i~G~~   66 (294)
                      ..++--++.|.||-++|||||+++|+.++
T Consensus       100 ~~~k~n~~~l~G~~~tGKS~f~~~i~~~l  128 (267)
T d1u0ja_         100 KFGKRNTIWLFGPATTGKTNIAEAIAHTV  128 (267)
T ss_dssp             CSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCccEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            34566788999999999999999998753

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=87.51  E-value=0.15  Score=40.30  Aligned_cols=55  Identities=16%  Similarity=0.143  Sum_probs=38.8

Q ss_pred             CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhH-HHhhhceEEEee
Q 022663          168 PFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDG-LETWATHLAYIQ  225 (294)
Q Consensus       168 ~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~-~~~~~d~v~~l~  225 (294)
                      +.+|+|+|| .-.|...++..+++.|.+--  .+..+|++|++.+- ...+-.|+..+.
T Consensus        79 ~~KviIId~-ad~l~~~aqNaLLK~LEEPp--~~t~fiLit~~~~~ll~TI~SRC~~i~  134 (198)
T d2gnoa2          79 TRKYVIVHD-CERMTQQAANAFLKALEEPP--EYAVIVLNTRRWHYLLPTIKSRVFRVV  134 (198)
T ss_dssp             SSEEEEETT-GGGBCHHHHHHTHHHHHSCC--TTEEEEEEESCGGGSCHHHHTTSEEEE
T ss_pred             CCEEEEEeC-ccccchhhhhHHHHHHhCCC--CCceeeeccCChhhCHHHHhcceEEEe
Confidence            458999999 56678888888888886532  35678899998764 344556665543

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=86.96  E-value=0.17  Score=41.91  Aligned_cols=24  Identities=42%  Similarity=0.634  Sum_probs=21.4

Q ss_pred             CCEEEEECCCCCcHHHHHHHHhCC
Q 022663           42 GSRCLLVGANGSGKTTLLKILAGK   65 (294)
Q Consensus        42 Ge~~~liG~NGsGKSTLlk~i~G~   65 (294)
                      +=.++|+|-.-+|||||+|.|.|.
T Consensus       112 ~~~v~vvG~PNvGKSsliN~L~~~  135 (273)
T d1puja_         112 AIRALIIGIPNVGKSTLINRLAKK  135 (273)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             ceEEEEEecCccchhhhhhhhhcc
Confidence            345899999999999999999984

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=86.59  E-value=0.1  Score=43.27  Aligned_cols=25  Identities=24%  Similarity=0.260  Sum_probs=19.9

Q ss_pred             EeCCCEEEEECCCCCcHHH--HHHHHh
Q 022663           39 ISPGSRCLLVGANGSGKTT--LLKILA   63 (294)
Q Consensus        39 i~~Ge~~~liG~NGsGKST--Llk~i~   63 (294)
                      +.+|+.+.|.+|.|||||+  |..++.
T Consensus         6 ~~~~~~~lv~~~TGsGKT~~~l~~~~~   32 (305)
T d2bmfa2           6 FRKKRLTIMDLHPGAGKTKRYLPAIVR   32 (305)
T ss_dssp             SSTTCEEEECCCTTSSTTTTHHHHHHH
T ss_pred             hhcCCcEEEEECCCCCHHHHHHHHHHH
Confidence            4689999999999999997  334443

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=86.22  E-value=0.16  Score=44.58  Aligned_cols=58  Identities=17%  Similarity=0.189  Sum_probs=32.7

Q ss_pred             HHHHHHHHccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhHHHhhhce
Q 022663          158 RVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATH  220 (294)
Q Consensus       158 Rv~lAraL~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~~~~~~d~  220 (294)
                      ++.=-.||...=..+-++||+    ......++..+......+ ..|-+.-.=+..+..+|+|
T Consensus       165 ~~e~d~al~rrF~~v~v~ep~----~~~~~~il~~~~~~~e~~-h~v~~~~~ai~~~v~ls~r  222 (387)
T d1qvra2         165 EIEKDPALERRFQPVYVDEPT----VEETISILRGLKEKYEVH-HGVRISDSAIIAAATLSHR  222 (387)
T ss_dssp             HHTTCTTTCSCCCCEEECCCC----HHHHHHHHHHHHHHHHHH-TTCEECHHHHHHHHHHHHH
T ss_pred             HhcccHHHHHhcccccCCCCc----HHHHHHHHHHHHHHHHhc-cCCcccHHHHHHHHHhccc
Confidence            333345677777888888886    555555555554433322 2344444445555556665

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.13  E-value=0.15  Score=43.99  Aligned_cols=23  Identities=30%  Similarity=0.317  Sum_probs=19.9

Q ss_pred             EEEECCCCCcHHHHHHHH---hCCcc
Q 022663           45 CLLVGANGSGKTTLLKIL---AGKHM   67 (294)
Q Consensus        45 ~~liG~NGsGKSTLlk~i---~G~~~   67 (294)
                      +||+|.-|+|||||+..|   +|.+.
T Consensus        20 I~iiGhvd~GKTTL~d~Ll~~~g~i~   45 (341)
T d1n0ua2          20 MSVIAHVDHGKSTLTDSLVQRAGIIS   45 (341)
T ss_dssp             EEEECCGGGTHHHHHHHHHHHHBCCB
T ss_pred             EEEEeCCCCcHHHHHHHHHHHCCCcc
Confidence            899999999999999988   46543

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=86.09  E-value=0.2  Score=40.97  Aligned_cols=24  Identities=21%  Similarity=0.491  Sum_probs=20.9

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhC
Q 022663           41 PGSRCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        41 ~Ge~~~liG~NGsGKSTLlk~i~G   64 (294)
                      .+.-+.|.|+.|+||+++.++|..
T Consensus        22 ~~~pvlI~Ge~GtGK~~~A~~ih~   45 (247)
T d1ny5a2          22 AECPVLITGESGVGKEVVARLIHK   45 (247)
T ss_dssp             CCSCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHH
Confidence            456689999999999999999964

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.01  E-value=0.19  Score=40.95  Aligned_cols=19  Identities=32%  Similarity=0.417  Sum_probs=17.1

Q ss_pred             EEEECCCCCcHHHHHHHHh
Q 022663           45 CLLVGANGSGKTTLLKILA   63 (294)
Q Consensus        45 ~~liG~NGsGKSTLlk~i~   63 (294)
                      ++++|.-++|||||...|.
T Consensus         9 i~iiGHvD~GKsTl~~~ll   27 (239)
T d1f60a3           9 VVVIGHVDSGKSTTTGHLI   27 (239)
T ss_dssp             EEEEECTTSCHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHH
Confidence            7899999999999998773

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=85.69  E-value=0.24  Score=42.91  Aligned_cols=21  Identities=29%  Similarity=0.434  Sum_probs=17.9

Q ss_pred             CCCEEEEECCCCCcHHHHHHH
Q 022663           41 PGSRCLLVGANGSGKTTLLKI   61 (294)
Q Consensus        41 ~Ge~~~liG~NGsGKSTLlk~   61 (294)
                      .+.++.|.||-|+||||++..
T Consensus       162 ~~~~~vI~G~pGTGKTt~i~~  182 (359)
T d1w36d1         162 TRRISVISGGPGTGKTTTVAK  182 (359)
T ss_dssp             TBSEEEEECCTTSTHHHHHHH
T ss_pred             cCCeEEEEcCCCCCceehHHH
Confidence            367999999999999998743

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=85.00  E-value=0.18  Score=36.73  Aligned_cols=30  Identities=10%  Similarity=0.220  Sum_probs=20.8

Q ss_pred             HccCCCEEEeeCCCCCCCHHHHHHHHHHHHH
Q 022663          165 LLHPFKVLLLDEITVDLDVVARMDLLDFFKD  195 (294)
Q Consensus       165 L~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~  195 (294)
                      .+.+-+++|+||-= .+|..+...+..++..
T Consensus        91 ~~~~~~~vIiDE~H-~~~~~~~~~~~~~l~~  120 (136)
T d1a1va1          91 SGGAYDIIICDECH-STDATSILGIGTVLDQ  120 (136)
T ss_dssp             GGCCCSEEEEETTT-CCSHHHHHHHHHHHHH
T ss_pred             hhhcCCEEEEeccc-ccCHHHHHHHHHHHHH
Confidence            34567999999985 4687766666555543

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=84.97  E-value=0.17  Score=41.38  Aligned_cols=18  Identities=28%  Similarity=0.425  Sum_probs=17.1

Q ss_pred             EEEECCCCCcHHHHHHHH
Q 022663           45 CLLVGANGSGKTTLLKIL   62 (294)
Q Consensus        45 ~~liG~NGsGKSTLlk~i   62 (294)
                      ++|+|.-++|||||+..|
T Consensus        27 i~iiGHVD~GKSTL~~~L   44 (245)
T d1r5ba3          27 IVFIGHVDAGKSTLGGNI   44 (245)
T ss_dssp             EEEEECGGGTHHHHHHHH
T ss_pred             EEEEeeCCCCHHHHHHHH
Confidence            799999999999999888

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.22  E-value=0.28  Score=36.09  Aligned_cols=52  Identities=19%  Similarity=0.139  Sum_probs=32.8

Q ss_pred             ccCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEeCChhH----------HHhhhceEEEe
Q 022663          166 LHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDG----------LETWATHLAYI  224 (294)
Q Consensus       166 ~~~p~iLlLDEPt~gLD~~~~~~l~~~l~~~~~~~g~tviivsHd~~~----------~~~~~d~v~~l  224 (294)
                      ..++++++.||----=|      +.+++..+. +.|++|++..=|.++          +..+||+|.-|
T Consensus        71 ~~~~d~I~IDEaQFf~d------l~~~~~~~~-~~~~~Viv~GLd~Df~~~~F~~~~~Ll~~Ad~I~kL  132 (133)
T d1xbta1          71 ALGVAVIGIDEGQFFPD------IVEFCEAMA-NAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKL  132 (133)
T ss_dssp             HHTCSEEEESSGGGCTT------HHHHHHHHH-HTTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEEC
T ss_pred             hcccceEEeehhHHHHH------HHHHHHHHH-hcCCcEEEEEeccccccCcchhHHHHHHhcCEEEec
Confidence            34799999999844312      334443333 458999998876543          44567776543

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=84.19  E-value=0.27  Score=46.27  Aligned_cols=25  Identities=24%  Similarity=0.388  Sum_probs=21.9

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhC
Q 022663           40 SPGSRCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        40 ~~Ge~~~liG~NGsGKSTLlk~i~G   64 (294)
                      ...+.+.|.|.||||||+-.|.|.-
T Consensus        84 ~~~QsIiisGeSGsGKTe~~k~il~  108 (684)
T d1lkxa_          84 QENQCVIISGESGAGKTEASKKIMQ  108 (684)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHH
Confidence            4678999999999999999988853

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=83.90  E-value=0.27  Score=46.49  Aligned_cols=25  Identities=28%  Similarity=0.395  Sum_probs=22.1

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhC
Q 022663           40 SPGSRCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        40 ~~Ge~~~liG~NGsGKSTLlk~i~G   64 (294)
                      .+.+.+.|.|+||||||+-.|.|..
T Consensus       123 ~~nQsIiisGeSGaGKTe~~k~il~  147 (712)
T d1d0xa2         123 RQNQSLLITGESGAGKTENTKKVIQ  147 (712)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCceEEEeCCCCCCHHHHHHHHHH
Confidence            4678999999999999999998854

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=83.39  E-value=0.3  Score=38.73  Aligned_cols=28  Identities=11%  Similarity=0.070  Sum_probs=24.8

Q ss_pred             EeCCCEEEEECCCCCcHHHHHHHHhCCc
Q 022663           39 ISPGSRCLLVGANGSGKTTLLKILAGKH   66 (294)
Q Consensus        39 i~~Ge~~~liG~NGsGKSTLlk~i~G~~   66 (294)
                      +++--++.|.||-++|||++...|+..+
T Consensus        50 ~PKkn~i~~~GP~~TGKS~f~~sl~~~l   77 (205)
T d1tuea_          50 TPKKNCLVFCGPANTGKSYFGMSFIHFI   77 (205)
T ss_dssp             CTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             CCCceEEEEECCCCccHHHHHHHHHHHh
Confidence            5778899999999999999999888754

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=82.51  E-value=0.33  Score=45.85  Aligned_cols=25  Identities=28%  Similarity=0.335  Sum_probs=21.8

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhC
Q 022663           40 SPGSRCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        40 ~~Ge~~~liG~NGsGKSTLlk~i~G   64 (294)
                      ...+.+.|.|.||||||+-.|.|.-
T Consensus        89 ~~~Q~IiisGeSGaGKTe~~k~il~  113 (710)
T d1br2a2          89 REDQSILCTGESGAGKTENTKKVIQ  113 (710)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHH
Confidence            4678999999999999999888853

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=80.72  E-value=0.39  Score=45.97  Aligned_cols=25  Identities=28%  Similarity=0.393  Sum_probs=21.4

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhC
Q 022663           40 SPGSRCLLVGANGSGKTTLLKILAG   64 (294)
Q Consensus        40 ~~Ge~~~liG~NGsGKSTLlk~i~G   64 (294)
                      ...+.+.|.|+||||||+-.|.|..
T Consensus       121 ~~~QsIiisGeSGaGKTe~~K~il~  145 (794)
T d2mysa2         121 RENQSILITGESGAGKTVNTKRVIQ  145 (794)
T ss_dssp             TCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence            4678999999999999998887753