Citrus Sinensis ID: 022692

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290---
Protein Sequence
MERLKDCMEELLKFTLSSHIDETLDFDLGISSKFCTNLLQDDPNDAVSPSTSFDFDSDEDSLQGVPLYPLYKRLALALCRSVNCGAFCRTYKKVALMNEECFLEQKEEEWSQLILNKGSSDLVDILKAVEFELHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILLNKCMMLKVQSVCHYDSFSEMLEAESLVKVLPGVKTIEEVLQVYKFIENSTQRRRKGPMVSLQYAFPKWLLSPMLHWPAYCLDSVMWAFKAFWVFRILLERFQMHSHHQDQLFSHHSCCLLSQM
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHccEEEEEccHHHHHHHHccccEEEEEEccccccccccccEEEEccEEEEEEEEEEEcccHHHHHHHccccccccccccHHHHHHHHHHcccHHHHHccccEEEEEEEccccccccccccHHHHHHHHHHHccHHHHHHHHHHHHcccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccHHHccccccccccHHcHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHcccEEEEEEEccccHcccccccEEEEccEEEEEEEEEEEcccHHHHHHHccHHHcccccccHHHHHHHHHHHccHHHHHHccEEEEEEEEccccccccccccHHHHHHHHHHHcccccHHHHHHHHcccccccHHHHHccccHHHHccc
Coil and Loop (DISEMBL)
MERLKDCMEELLKFTLSShidetldfdlgISSKFCTnllqddpndavspstsfdfdsdedslqgvplypLYKRLALALCRsvncgafcRTYKKVALMNEECFLEQKEEEWSQLILNKGSSDLVDILKAVEFELHVQEPFFSFIKDGLEtvegrctisdynsigpgsvILLNKCMMLKVQSVCHYDSFSEMLEAESLVKVLPGVKTIEEVLQVYKFIENstqrrrkgpmvslqyafpkwllspmlhwpayclDSVMWAFKAFWVFRILLERFQmhshhqdqlfshhsccllsqm
Flexible Loop (DISEMBL)
MERLKDCMEELLKFTLSSHIDETLDFDLGISSKFCTNLLQDDPNDAVSPSTSFDFDSDEDSLQGVPLYPLYKRLALALCRSVNCGAFCRTYKKVALMNEECFLEQKEEEWSQLILNKGSSDLVDILKAVEFELHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILLNKCMMLKVQSVCHYDSFSEMLEAESLVKVLPGVKTIEEVLQVYKFienstqrrrkgpmVSLQYAFPKWLLSPMLHWPAYCLDSVMWAFKAFWVFRILLERFQMHSHHQDQLFSHHSCCLLSQM
Low Complexity Region (SEG)
MERLKDCMEELLKFTLSSHIDETLDFDLGISSKFCTNLLQDDPNDAVspstsfdfdsdedsLQGVPLYPLYKRLALALCRSVNCGAFCRTYKKVALMNEECFLEQKEEEWSQLILNKGSSDLVDILKAVEFELHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILLNKCMMLKVQSVCHYDSFSEMLEAESLVKVLPGVKTIEEVLQVYKFIENSTQRRRKGPMVSLQYAFPKWLLSPMLHWPAYCLDSVMWAFKAFWVFRILLERFQMHSHHQDQLFSHHSCCLLSQM
Disordered region (IsUnstruct)
*******MEELLKFTLSSHIDETLDFDLGISSKFCTNLL**********************LQGVPLYPLYKRLALALCRSVNCGAFCRTYKKVALMNEECFLEQKEEEWSQLILNKGSSDLVDILKAVEFELHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILLNKCMMLKVQSVCHYDSFSEMLEAESLVKVLPGVKTIEEVLQVYKFIENSTQRRRKGPMVSLQYAFPKWLLSPMLHWPAYCLDSVMWAFKAFWVFRILLERFQMHSHHQDQLFSHHSCCLL***
Disordered Region (DISOPRED)
******C*EELLKFTLSSHIDETLDFDLGISSKFCTNLLQDDPNDAVSPSTSFDFDSDEDSLQGVPLYPLYKRLALALCRSVNCGAFCRTYKK***********************KGSSDLVDILKAVEFELHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILLNKCMMLKVQSVCHYDSFSEMLEAESLVKVLPGVKTIEEVLQVYKFIENSTQRRRKGPMVSLQYAFPKWLLSPMLHWPAYCLDSVMWAFKAFWVFRILLERFQMHSHHQDQLFSHHSCCLLSQM
Disordered Region (DISEMBL)
MERLKDCMEELLKFTLSSHIDETLDFDLGISSKFCTNLLQDDPNDAVSPSTSFDFDSDEDSLQGVPLYPLYKRLALALCRSVNCGAFCRTYKKVALMNEECFLEQKEEEWSQLILNKGSSDLVDILKAVEFELHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILLNKCMMLKVQSVCHYDSFSEMLEAESLVKVLPGVKTIEEVLQVYKFIENSTQRRRKGPMVSLQYAFPKWLLSPMLHWPAYCLDSVMWAFKAFWVFRILLERFQMH********SHHSCCLLSQM
Disordered Region (DISPRO)
MERLKDCMEELLKFTLSSHIDETLDFDLGISSKFCTNLLQDDPNDAVSPSTSFDFDSDEDSLQGVPLYPLYKRLALALCRSVNCGAFCRTYKKVALMNEECFLEQKEEEWSQLILNKGSSDLVDILKAVEFELHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILLNKCMMLKVQSVCHYDSFSEMLEAESLVKVLPGVKTIEEVLQVYKFIENSTQRRRKGPMVSLQYAFPKWLLSPMLHWPAYCLDSVMWAFKAFWVFRILLERFQMHSHHQDQLFSHHSCCLLS**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MERLKDCMEELLKFTLSSHIDETLDFDLGISSKFCTNLLQDDPNDAVSPSTSFDFDSDEDSLQGVPLYPLYKRLALALCRSVNCGAFCRTYKKVALMNEECFLEQKEEEWSQLILNKGSSDLVDILKAVEFELHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILLNKCMMLKVQSVCHYDSFSEMLEAESLVKVLPGVKTIEEVLQVYKFIENSTQRRRKGPMVSLQYAFPKWLLSPMLHWPAYCLDSVMWAFKAFWVFRILLERFQMHSHHQDQLFSHHSCCLLSQM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	293
224093009	380	predicted protein [Populus trichocarpa]	0.720	0.555	0.546	2e-60
255586386	370	conserved hypothetical protein [Ricinus	0.713	0.564	0.528	2e-58
359495929	398	PREDICTED: uncharacterized protein LOC10	0.726	0.535	0.522	1e-57
363808278	400	uncharacterized protein LOC100807259 [Gl	0.692	0.507	0.476	7e-46
238479547	388	RNA-binding ASCH domain protein [Arabido	0.730	0.551	0.427	2e-42
147846119	796	hypothetical protein VITISV_022668 [Viti	0.477	0.175	0.573	1e-38
297828804	240	hypothetical protein ARALYDRAFT_477581 [	0.740	0.904	0.376	5e-38
18396513	244	RNA-binding ASCH domain protein [Arabido	0.744	0.893	0.378	1e-36
21536491	244	unknown [Arabidopsis thaliana]	0.744	0.893	0.378	1e-36
449468876	238	PREDICTED: uncharacterized LOC101221961	0.597	0.735	0.439	3e-35

>gi|224093009|ref|XP_002309781.1| predicted protein [Populus trichocarpa] gi|222852684|gb|EEE90231.1| predicted protein [Populus trichocarpa]

 Score =  238 bits (607), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 117/214 (54%), Positives = 160/214 (74%), Gaps = 3/214 (1%)

Query: 1   MERLKDCMEELLKFTLSSHIDETLDFDLGISSKFCTNLLQDDPNDAVSPSTSFDFDSDED 60
           ME+ ++ +EELLKFTL SHI++TL+F+LG+S  FC NLL++DPND +  ST     +  D
Sbjct: 1   MEKQRERIEELLKFTLESHINQTLEFNLGLSKDFCINLLEEDPNDMLCHSTPTP--TPTD 58

Query: 61  SLQGVPLYPLYKRLALALCRSVNCGAFCRTYKKVALMNEECFLEQKEEEWSQLILNKGSS 120
           S  GV LYPLYKRLA AL RSV  GA CRTY+K+   +++  L+QKEE W QLI  KG  
Sbjct: 59  SFDGVALYPLYKRLASALYRSVKSGAVCRTYEKMVFGDKDSNLKQKEENWDQLIKEKGL- 117

Query: 121 DLVDILKAVEFELHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILLNKCMMLKVQS 180
           +L+++L+ +  E+HVQEP+FS +KDG +T+EGRC   DY  I PG +IL+NK ++LKV+ 
Sbjct: 118 ELINVLEGISCEIHVQEPYFSLLKDGRKTIEGRCATGDYIRIEPGDLILVNKIVVLKVED 177

Query: 181 VCHYDSFSEMLEAESLVKVLPGVKTIEEVLQVYK 214
           V  Y SFS+ML+AE+L KVLPGVKT+EE +++Y+
Sbjct: 178 VRRYASFSKMLQAENLEKVLPGVKTVEEGVKIYR 211

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255586386|ref|XP_002533840.1| conserved hypothetical protein [Ricinus communis] gi|223526219|gb|EEF28542.1| conserved hypothetical protein [Ricinus communis]

 Score =  231 bits (590), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 113/214 (52%), Positives = 163/214 (76%), Gaps = 5/214 (2%)

Query: 1   MERLKDCMEELLKFTLSSHIDETLDFDLGISSKFCTNLLQDDPNDAVSPSTSFDFDSDED 60
           ME+L++ +EE++K+TL+SHI++TL FDL +S +FC+NLL+ DPND VS       +S   
Sbjct: 1   MEQLRNRIEEIVKYTLNSHINQTLGFDLSLSKEFCSNLLRADPNDTVS----LPPNSTSG 56

Query: 61  SLQGVPLYPLYKRLALALCRSVNCGAFCRTYKKVALMNEECFLEQKEEEWSQLILNKGSS 120
           S +GVP YPL++RL  AL + +   +FC+TY  +  +NE+  L+QKEE+W++LIL KGS 
Sbjct: 57  SFEGVPEYPLFRRLGSALYQCIISRSFCKTYDTIEFINEDNSLKQKEEQWNKLILEKGS- 115

Query: 121 DLVDILKAVEFELHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILLNKCMMLKVQS 180
           +L+++L A   ELHVQEPFFS +KDGL+T+EGRC   +Y+ I PG+++L+NK ++L+V+ 
Sbjct: 116 ELMNVLMATFHELHVQEPFFSLLKDGLKTIEGRCADDNYSRIEPGALLLINKSVVLEVKD 175

Query: 181 VCHYDSFSEMLEAESLVKVLPGVKTIEEVLQVYK 214
           V  Y SF +MLEAESL KVLPGVKTIEE ++VY+
Sbjct: 176 VRRYPSFLKMLEAESLSKVLPGVKTIEEGVEVYR 209

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495929|ref|XP_002272151.2| PREDICTED: uncharacterized protein LOC100242314 [Vitis vinifera] gi|296081341|emb|CBI17687.3| unnamed protein product [Vitis vinifera]

 Score =  229 bits (584), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 117/224 (52%), Positives = 162/224 (72%), Gaps = 11/224 (4%)

Query: 4   LKDCMEELLKFTLSSHIDETLDFDLGISSKFCTNLLQDDP-NDAVSPSTSFDFDSDEDSL 62
           L +C+EEL+K+TL S ++ TL+ DLG+S  +C+ LL+DD   D  S ST        DS 
Sbjct: 19  LANCVEELVKYTLYSSVNGTLEIDLGLSKDYCSALLKDDHLTDPTSIST--------DSF 70

Query: 63  QGVPLYPLYKRLALALCRSVNCGAFCRTYKKVALMNEECFLEQKEEEWSQLILNKGSSDL 122
           +GVP YPLYKRL+ AL RS+  GAF   Y  +AL++E+  L+QKEE W++L+++KG  +L
Sbjct: 71  EGVPPYPLYKRLSAALYRSIISGAFWEIYSTMALIHEDSSLKQKEE-WNKLVVDKGL-EL 128

Query: 123 VDILKAVEFELHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILLNKCMMLKVQSVC 182
           V+ILK ++FELHVQEPFFS +KDGL+ +EGRC + DYN IG G++IL NKC++L+VQ V 
Sbjct: 129 VNILKTIDFELHVQEPFFSQLKDGLKIIEGRCAVGDYNRIGSGALILFNKCLVLEVQDVR 188

Query: 183 HYDSFSEMLEAESLVKVLPGVKTIEEVLQVYKFIENSTQRRRKG 226
            Y SFS++LE+E L +VLPGVKTIEE +Q+Y+      + R  G
Sbjct: 189 RYASFSQLLESEGLAEVLPGVKTIEEGVQIYRKFYTKEKERSNG 232

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363808278|ref|NP_001242240.1| uncharacterized protein LOC100807259 [Glycine max] gi|255644803|gb|ACU22903.1| unknown [Glycine max]

 Score =  190 bits (482), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 102/214 (47%), Positives = 145/214 (67%), Gaps = 11/214 (5%)

Query: 3   RLKDCMEELLKFTLSSHIDETLDFDLGISSKFCTNLLQDDPNDAVSPSTSFDFDSDEDSL 62
           +L DC+EEL++FTL+S+        L +SS+F +NLL+DD   A  PS+S      +DSL
Sbjct: 20  KLCDCLEELVRFTLNSN-----SHHLNLSSQFFSNLLKDD---ATHPSSSHSLSQPDDSL 71

Query: 63  QGVPLYPLYKRLALALCRSVNCGAFCRTYKKVALMNE--ECFLEQKEEEWSQLILNKGSS 120
           +GVP YPLYKR + AL + ++   FCRT   +A+ +E  +  ++QK  EW +LI+ KG  
Sbjct: 72  EGVPPYPLYKRFSSALLKCMDSETFCRTGANLAMTDEFEDSSMQQKRNEWHRLIVEKGF- 130

Query: 121 DLVDILKAVEFELHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILLNKCMMLKVQS 180
           ++ +ILK+V FE HVQEPFFS + DGL+T+EGRC    YN I  G++IL NK ++ +VQ 
Sbjct: 131 EIENILKSVSFEFHVQEPFFSQLNDGLKTIEGRCATGKYNRIKSGNLILFNKSVVFEVQG 190

Query: 181 VCHYDSFSEMLEAESLVKVLPGVKTIEEVLQVYK 214
           V  Y +F  MLEAESL K LPGV++ EE ++VY+
Sbjct: 191 VRRYPTFFAMLEAESLGKGLPGVESSEEGVKVYQ 224

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|238479547|ref|NP_001154572.1| RNA-binding ASCH domain protein [Arabidopsis thaliana] gi|330255179|gb|AEC10273.1| RNA-binding ASCH domain protein [Arabidopsis thaliana]

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 100/234 (42%), Positives = 151/234 (64%), Gaps = 20/234 (8%)

Query: 1   MERLKDCMEELLKFTLSSHIDETLDFDLGISSKFCTNLLQDDPNDAVSPSTSFDFDSDED 60
           M +++DC++E++KFTL    D  ++FD+G++ +FC+ LL          S   D +  E 
Sbjct: 1   MIKIRDCLDEMVKFTL----DYCVEFDIGLTGEFCSGLL-------CGESVLHDGERIES 49

Query: 61  S-------LQGVPLYPLYKRLALALCRSVNCGAFCRTYKKVALMNEECFLEQKEEEWSQL 113
           S         GVP YPLYK LAL L +S++ G+FC T++K++L  E   L++KE+EWS+L
Sbjct: 50  SSYALLHRFSGVPDYPLYKVLALGLLKSIDSGSFCGTFEKISLGKEVIRLKEKEDEWSKL 109

Query: 114 ILNKGSSDLVDILKAVEFELHVQEPFFSFIKDGLETVEGRCTISDYNSI-GPGSVILLNK 172
           I  KG S+LV+ LK V  EL VQEP FS +KDG++TVE RC   +Y+ I   GS++++NK
Sbjct: 110 INQKG-SELVNALKDVFSELQVQEPLFSLMKDGIKTVEARCFEEEYDRIRRGGSMVMINK 168

Query: 173 CMMLKVQSVCHYDSFSEMLEAESLVKVLPGVKTIEEVLQVYKFIENSTQRRRKG 226
           C+M +V  +  Y SF E+L+AES  KV PG KT+EE +Q+++ + ++ Q    G
Sbjct: 169 CLMFEVLELHQYASFYELLKAESSEKVFPGTKTVEEGMQMFRKLYDTDQENFNG 222

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147846119|emb|CAN83746.1| hypothetical protein VITISV_022668 [Vitis vinifera]

 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 86/150 (57%), Positives = 115/150 (76%), Gaps = 10/150 (6%)

Query: 60  DSLQGVPLYPLYKRLALALCRSVNCGAFCRTYKKVALMNEECFLEQKEEEWSQLILNKGS 119
           DS +GVP YPLYKRL+ AL RS+  GAF   Y  +AL++E+  L+QKEE W++L+++KG 
Sbjct: 18  DSFEGVPPYPLYKRLSAALYRSIISGAFWEIYSTMALIHEDSSLKQKEE-WNKLVVDKGL 76

Query: 120 SDLVDILKAVEFELHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILLNKCMMLKVQ 179
            +LV+ILK ++FELHVQEPFFS +KDGL+ +EGR        IG G++IL NKC++L+VQ
Sbjct: 77  -ELVNILKTIDFELHVQEPFFSQLKDGLKIIEGR--------IGSGALILFNKCLVLEVQ 127

Query: 180 SVCHYDSFSEMLEAESLVKVLPGVKTIEEV 209
            V  Y SFS++LE+E L +VLPGVKTIEEV
Sbjct: 128 DVRRYASFSQLLESEGLAEVLPGVKTIEEV 157

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297828804|ref|XP_002882284.1| hypothetical protein ARALYDRAFT_477581 [Arabidopsis lyrata subsp. lyrata] gi|297328124|gb|EFH58543.1| hypothetical protein ARALYDRAFT_477581 [Arabidopsis lyrata subsp. lyrata]

 Score =  164 bits (414), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 102/271 (37%), Positives = 148/271 (54%), Gaps = 54/271 (19%)

Query: 3   RLKDCMEELLKFTLSSHIDETL-DFDLGISSKFCTNLLQDDPNDAVSPSTSFDFDSDEDS 61
            L++CME LL+FTLSSH+DE++  FDL ++  FC +LL++  +    P+           
Sbjct: 13  NLRECMESLLRFTLSSHLDESVPSFDLDLTRDFCLHLLEEATDSTEKPA----------- 61

Query: 62  LQGVPLYPLYKRLALALCRSVNCGAFCRTYKKVALMNEECFLEQKE-----EEWSQLILN 116
                   +YK LA AL                     EC   + +     E++S+L   
Sbjct: 62  --------VYKLLARALS--------------------ECLASEGDNNPNLEKYSKLFHG 93

Query: 117 KGSSDLVDILKAVEFELHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILLNKCMML 176
            G  DL+++LK V FELHVQEP+F+ +KDGL+TVEGRC + DY  I  G+ IL NKC++L
Sbjct: 94  LG-HDLINMLKKVNFELHVQEPYFTQLKDGLKTVEGRCAVGDYMRISSGAFILFNKCLLL 152

Query: 177 KVQSVCHYDSFSEMLEAESLVKVLPGVKTIEEVLQVYKFIENSTQRRRKGPMVSLQYAFP 236
           +VQ V HY SFSEML  E L KVLPGV++IEE +QVY+   +  + R  G ++++  A P
Sbjct: 153 EVQDVHHYTSFSEMLIMEGLAKVLPGVESIEEGVQVYRNFYSEEKERMNG-VLAIHVAKP 211

Query: 237 KWLLSPMLHWPAYCLDSVMWAFKAFWVFRIL 267
                   + P   L  V+   K+  +  +L
Sbjct: 212 A-------NQPYAALAGVLSELKSTGIKSLL 235

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18396513|ref|NP_566202.1| RNA-binding ASCH domain protein [Arabidopsis thaliana] gi|6017115|gb|AAF01598.1|AC009895_19 unknown protein [Arabidopsis thaliana] gi|22655129|gb|AAM98155.1| expressed protein [Arabidopsis thaliana] gi|32189307|gb|AAP75808.1| At3g03320 [Arabidopsis thaliana] gi|332640408|gb|AEE73929.1| RNA-binding ASCH domain protein [Arabidopsis thaliana]

 Score =  159 bits (403), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 103/272 (37%), Positives = 150/272 (55%), Gaps = 54/272 (19%)

Query: 4   LKDCMEELLKFTLSSHIDETL-DFDLGISSKFCTNLLQDDPNDAVSPSTSFDFDSDEDSL 62
           L++CME LL+F+L SH++E++  FDL ++  FC +LL +              DS E S 
Sbjct: 14  LRECMESLLRFSLRSHLNESVPSFDLDLTRDFCLHLLGEAT------------DSTEKS- 60

Query: 63  QGVPLYPLYKRLALALCRSVNCGAFCRTYKKVALMNEECFLEQKE-----EEWSQLILNK 117
                  +YK LA AL                     EC   + +     E++S+LI   
Sbjct: 61  ------AVYKLLATALS--------------------ECLASEGDKNSNLEKYSKLIHGL 94

Query: 118 GSSDLVDILKAVEFELHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILLNKCMMLK 177
           G  DL+++LK V FELHVQEP+F+ +KDGL+TVEGRC + DY  I  G  +L NKC++L+
Sbjct: 95  G-YDLINMLKEVNFELHVQEPYFTQLKDGLKTVEGRCAVGDYMRISSGDFLLFNKCLLLE 153

Query: 178 VQSVCHYDSFSEMLEAESLVKVLPGVKTIEEVLQVYKFIENSTQRRRKGPMVSLQYAFPK 237
           VQ V  Y SFSEML+ E L KVLPGV++IEE +QVY+   +  + R  G +V+++ A P 
Sbjct: 154 VQDVHRYTSFSEMLKVEGLAKVLPGVESIEEGVQVYRNFYSEEKERMNG-VVAIRVAKPA 212

Query: 238 WLLSPMLHWPAYCLDSVMWAFKAFWVFRILLE 269
                  + P+  L  V+   K+  +  +L E
Sbjct: 213 -------NQPSAALAGVLSELKSSGIKSLLDE 237

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21536491|gb|AAM60823.1| unknown [Arabidopsis thaliana]

 Score =  159 bits (403), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 103/272 (37%), Positives = 151/272 (55%), Gaps = 54/272 (19%)

Query: 4   LKDCMEELLKFTLSSHIDETL-DFDLGISSKFCTNLLQDDPNDAVSPSTSFDFDSDEDSL 62
           L++CME LL+F+L SH++E++  FDL ++  FC +LL +              DS E S 
Sbjct: 14  LRECMESLLRFSLRSHLNESVPSFDLDLTRDFCLHLLGEAT------------DSTEKS- 60

Query: 63  QGVPLYPLYKRLALALCRSVNCGAFCRTYKKVALMNEECFLEQKE-----EEWSQLILNK 117
                  +YK LA AL                     EC   + +     E++S+LI   
Sbjct: 61  ------AVYKLLATALS--------------------ECLASEGDKNSNLEKYSKLIHGL 94

Query: 118 GSSDLVDILKAVEFELHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILLNKCMMLK 177
           G  DL+++LK V FELHVQEP+F+ +KDGL+TVEGRC + DY  I  G+ +L NKC++L+
Sbjct: 95  G-YDLINMLKEVNFELHVQEPYFTQLKDGLKTVEGRCAVGDYMRISSGAFLLFNKCLLLE 153

Query: 178 VQSVCHYDSFSEMLEAESLVKVLPGVKTIEEVLQVYKFIENSTQRRRKGPMVSLQYAFPK 237
           VQ V  Y SFSEML+ E L KVLPGV++IEE +QVY+   +  + R  G +V+++ A P 
Sbjct: 154 VQDVHRYTSFSEMLKVEGLSKVLPGVESIEEGVQVYRNFYSEEKERMNG-VVAIRVAKPA 212

Query: 238 WLLSPMLHWPAYCLDSVMWAFKAFWVFRILLE 269
                  + P+  L  V+   K+  +  +L E
Sbjct: 213 -------NQPSAALAGVLSELKSSGIKSLLDE 237

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468876|ref|XP_004152147.1| PREDICTED: uncharacterized LOC101221961 [Cucumis sativus]

 Score =  154 bits (390), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 95/216 (43%), Positives = 128/216 (59%), Gaps = 41/216 (18%)

Query: 4   LKDCMEELLKFTLSSHIDETLDFD--LGISSKFCTNLLQDDPNDAVSPSTSFDFDSDEDS 61
           L+DC+EELLKFTL SHI+ TLD D  LG S+ F ++LL  + ND   P  S         
Sbjct: 15  LRDCLEELLKFTLQSHINGTLDIDHDLGFSTDFSSHLL--NHNDC--PDVS--------- 61

Query: 62  LQGVPLYPLYKRLALALCRSVN---CGAFCRTYKKVALMNEECFLEQKEEEWSQLILNKG 118
                   LYK L   L +SV+   CG+                L+  E+E     + +G
Sbjct: 62  -------RLYKDLVSTLLKSVSKASCGS----------------LDDFEDEEESNEIAEG 98

Query: 119 SSDLVDILKAVEFELHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILLNKCMMLKV 178
            ++LV++LK V FELHVQEPFF+ +KDGL+ VEGRC   +YN I  G++IL NKC++ +V
Sbjct: 99  RAELVNVLKTVNFELHVQEPFFTQLKDGLKRVEGRCAAGNYNRIQSGALILFNKCLLFEV 158

Query: 179 QSVCHYDSFSEMLEAESLVKVLPGVKTIEEVLQVYK 214
           Q V  Y SF  ML+AESL  VLPGVKT+ + +Q+Y+
Sbjct: 159 QDVRQYPSFYAMLKAESLDNVLPGVKTLTDGVQIYR 194

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	293
TAIR|locus:5019474741	388	AT2G43465 "AT2G43465" [Arabido	0.754	0.569	0.422	6.4e-44
TAIR|locus:2099699	244	AT3G03320 "AT3G03320" [Arabido	0.491	0.590	0.476	1.2e-39

TAIR|locus:5019474741 AT2G43465 "AT2G43465" [Arabidopsis thaliana (taxid:3702)]

 Score = 463 (168.0 bits), Expect = 6.4e-44, P = 6.4e-44
 Identities = 96/227 (42%), Positives = 147/227 (64%)

Query:     1 MERLKDCMEELLKFTLSSHIDETLDFDLGISSKFCTNLLQDDPNDAVXXXXXXXXXXXXX 60
             M +++DC++E++KFTL    D  ++FD+G++ +FC+ LL  +                  
Sbjct:     1 MIKIRDCLDEMVKFTL----DYCVEFDIGLTGEFCSGLLCGESVLHDGERIESSSYALLH 56

Query:    61 XLQGVPLYPLYKRLALALCRSVNCGAFCRTYKKVALMNEECFLEQKEEEWSQLILNKGSS 120
                GVP YPLYK LAL L +S++ G+FC T++K++L  E   L++KE+EWS+LI  KGS 
Sbjct:    57 RFSGVPDYPLYKVLALGLLKSIDSGSFCGTFEKISLGKEVIRLKEKEDEWSKLINQKGS- 115

Query:   121 DLVDILKAVEFELHVQEPFFSFIKDGLETVEGRCTISDYNSIGPG-SVILLNKCMMLKVQ 179
             +LV+ LK V  EL VQEP FS +KDG++TVE RC   +Y+ I  G S++++NKC+M +V 
Sbjct:   116 ELVNALKDVFSELQVQEPLFSLMKDGIKTVEARCFEEEYDRIRRGGSMVMINKCLMFEVL 175

Query:   180 SVCHYDSFSEMLEAESLVKVLPGVKTIEEVLQVYKFIENSTQRRRKG 226
              +  Y SF E+L+AES  KV PG KT+EE +Q+++ + ++ Q    G
Sbjct:   176 ELHQYASFYELLKAESSEKVFPGTKTVEEGMQMFRKLYDTDQENFNG 222

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2099699 AT3G03320 "AT3G03320" [Arabidopsis thaliana (taxid:3702)]

 Score = 340 (124.7 bits), Expect = 1.2e-39, Sum P(2) = 1.2e-39
 Identities = 72/151 (47%), Positives = 101/151 (66%)

Query:    91 YKKVALMNEECFLEQKE-----EEWSQLILNKGSSDLVDILKAVEFELHVQEPFFSFIKD 145
             YK +A    EC   + +     E++S+LI   G  DL+++LK V FELHVQEP+F+ +KD
Sbjct:    63 YKLLATALSECLASEGDKNSNLEKYSKLIHGLGY-DLINMLKEVNFELHVQEPYFTQLKD 121

Query:   146 GLETVEGRCTISDYNSIGPGSVILLNKCMMLKVQSVCHYDSFSEMLEAESLVKVLPGVKT 205
             GL+TVEGRC + DY  I  G  +L NKC++L+VQ V  Y SFSEML+ E L KVLPGV++
Sbjct:   122 GLKTVEGRCAVGDYMRISSGDFLLFNKCLLLEVQDVHRYTSFSEMLKVEGLAKVLPGVES 181

Query:   206 IEEVLQVYKFIENSTQRRRKGPMVSLQYAFP 236
             IEE +QVY+   +  + R  G +V+++ A P
Sbjct:   182 IEEGVQVYRNFYSEEKERMNG-VVAIRVAKP 211

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	293
cd06555	109	cd06555, ASCH_PF0470_like, ASC-1 homology domain,	3e-19
COG4043	111	COG4043, COG4043, Preprotein translocase subunit S	3e-16

>gnl|CDD|119347 cd06555, ASCH_PF0470_like, ASC-1 homology domain, subfamily similar to Pyrococcus furiosus Pf0470

 Score = 80.7 bits (200), Expect = 3e-19
 Identities = 36/101 (35%), Positives = 53/101 (52%), Gaps = 5/101 (4%)

Query: 131 FELHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILLN-----KCMMLKVQSVCHYD 185
            E+ ++E  F  IK G +T+E R        I  G  IL N     + +++KV  +  YD
Sbjct: 1   HEMGLEEEPFELIKSGKKTIEIRLNDEKRQQIKVGDKILFNDLDTGQQLLVKVVDIRKYD 60

Query: 186 SFSEMLEAESLVKVLPGVKTIEEVLQVYKFIENSTQRRRKG 226
           SF E+LE E L KV PGV +IEE ++    I +  Q ++ G
Sbjct: 61  SFRELLEEEGLEKVGPGVDSIEEGVKDTYKIYSKEQEKKYG 101

The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation. Length = 109

>gnl|CDD|226530 COG4043, COG4043, Preprotein translocase subunit Sec61beta [Intracellular trafficking, secretion, and vesicular transport]

 Score = 72.9 bits (179), Expect = 3e-16
 Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 1/98 (1%)

Query: 130 EFELHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILLNKCMML-KVQSVCHYDSFS 188
              + ++E +   IK G + +E R        I PG  I+ N   +  +V  V  YD+F 
Sbjct: 2   VHRMGLREEYLELIKAGKKKIEVRLADPKRRQIKPGDKIIFNGDKLKVEVIDVRVYDTFE 61

Query: 189 EMLEAESLVKVLPGVKTIEEVLQVYKFIENSTQRRRKG 226
           EML  E +  VLP V + EE L+ Y+    S + +R G
Sbjct: 62  EMLREEPIENVLPDVPSFEEGLRRYRNFYPSEKEKRYG 99

Length = 111

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	293
cd06555	109	ASCH_PF0470_like ASC-1 homology domain, subfamily	100.0
COG4043	111	Preprotein translocase subunit Sec61beta [Intracel	100.0
cd06541	105	ASCH ASC-1 homology or ASCH domain, a small beta-b	99.83
PF04266	105	ASCH: ASCH domain; InterPro: IPR007374 The ASCH do	99.67
cd06552	100	ASCH_yqfb_like ASC-1 homology domain, subfamily si	98.98
PF12961	72	DUF3850: Domain of Unknown Function with PDB struc	98.43
PRK04980	102	hypothetical protein; Provisional	96.93
COG2411	188	Uncharacterized conserved protein [Function unknow	92.57
COG3097	106	Uncharacterized protein conserved in bacteria [Fun	91.63
PRK12279	311	50S ribosomal protein L22/unknown domain fusion pr	88.14
cd06553	127	ASCH_Ef3133_like ASC-1 homology domain, subfamily	86.07
COG4933	124	Uncharacterized conserved protein [Function unknow	84.77
COG1935	122	Uncharacterized conserved protein [Function unknow	81.1
PRK11507	70	ribosome-associated protein; Provisional	80.57

>cd06555 ASCH_PF0470_like ASC-1 homology domain, subfamily similar to Pyrococcus furiosus Pf0470

Probab=100.00  E-value=7.6e-40  Score=268.21  Aligned_cols=104  Identities=35%  Similarity=0.487  Sum_probs=101.8

Q ss_pred             eeeeccccchHHHhcCCceEEEeecCccccCCCCCCEEEEce-----eEEEEEEEEeecCCHHHHHhccCccccCCCCCC
Q 022692          131 FELHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILLNK-----CMMLKVQSVCHYDSFSEMLEAESLVKVLPGVKT  205 (293)
Q Consensus       131 heM~L~e~yF~lIksGkKTIE~RLnDeKRq~IkvGD~I~F~k-----~L~v~V~~Vr~Y~SF~eLLe~EgL~kvlPG~~S  205 (293)
                      |+|+|+++||++|++|+||||||+||+||++|++||+|+|++     ++.|+|++|++|+||++||++|++++++|+++|
T Consensus         1 h~m~l~~~~F~~I~~G~KtiEiRlnD~kr~~ikvGD~I~f~~~~~~~~l~v~V~~i~~Y~sF~~ll~~e~~~~~~~~~~s   80 (109)
T cd06555           1 HEMGLEEEPFELIKSGKKTIEIRLNDEKRQQIKVGDKILFNDLDTGQQLLVKVVDIRKYDSFRELLEEEGLEKVGPGVDS   80 (109)
T ss_pred             CccccChHHHHHHHcCCCEEEEEecccchhcCCCCCEEEEEEcCCCcEEEEEEEEEEecCCHHHHHHhcCHhhcCCCCCc
Confidence            789999999999999999999999999999999999999985     899999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCChHHHhhcCCeEEEEEee
Q 022692          206 IEEVLQVYKFIENSTQRRRKGPMVSLQYAF  235 (293)
Q Consensus       206 iEEgv~~yr~iYSkEkE~qyGV~VAIeI~l  235 (293)
                      +|||+++||+|||+|||++||| |||+|++
T Consensus        81 ~ee~~~~~~~~Y~~e~e~~~Gv-laI~i~~  109 (109)
T cd06555          81 IEEGVKDTYKIYSKEQEKKYGV-LAIEIRV  109 (109)
T ss_pred             HHHHHHHHHHhCCHHHHHhcCE-EEEEEEC
Confidence            9999999999999999999999 9999985

The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation.

>COG4043 Preprotein translocase subunit Sec61beta [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.8e-38  Score=260.01  Aligned_cols=107  Identities=29%  Similarity=0.462  Sum_probs=104.3

Q ss_pred             ceeeeccccchHHHhcCCceEEEeecCccccCCCCCCEEEEc-eeEEEEEEEEeecCCHHHHHhccCccccCCCCCCHHH
Q 022692          130 EFELHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILLN-KCMMLKVQSVCHYDSFSEMLEAESLVKVLPGVKTIEE  208 (293)
Q Consensus       130 ~heM~L~e~yF~lIksGkKTIE~RLnDeKRq~IkvGD~I~F~-k~L~v~V~~Vr~Y~SF~eLLe~EgL~kvlPG~~SiEE  208 (293)
                      .|+|+|++.||++|++|+|||||||||+||++||+||+|.|| ..+.|+|++||.|+||++||+.||++|++|+.+|+||
T Consensus         2 ~~~mgL~eeylE~IK~GkK~iEvRl~d~krr~ik~GD~IiF~~~~l~v~V~~vr~Y~tF~~mlreepiE~v~p~~~S~ee   81 (111)
T COG4043           2 VHRMGLREEYLELIKAGKKKIEVRLADPKRRQIKPGDKIIFNGDKLKVEVIDVRVYDTFEEMLREEPIENVLPDVPSFEE   81 (111)
T ss_pred             ceeechHHHHHHHHHcccceEEEEecCHhhcCCCCCCEEEEcCCeeEEEEEEEeehhHHHHHHHhcChhhhCCCCccHHH
Confidence            489999999999999999999999999999999999999999 8999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCChHHHhhcCCeEEEEEeecc
Q 022692          209 VLQVYKFIENSTQRRRKGPMVSLQYAFPK  237 (293)
Q Consensus       209 gv~~yr~iYSkEkE~qyGV~VAIeI~lp~  237 (293)
                      ||..||+||++|+|++||| +||+|+..-
T Consensus        82 ~l~~~~~~Y~~~kE~~yGv-laI~ie~i~  109 (111)
T COG4043          82 GLRRYRNFYPSEKEKRYGV-LAIEIEPIG  109 (111)
T ss_pred             HHHHHHHhCcHhHhhccce-EEEEEEEcC
Confidence            9999999999999999999 999999653

>cd06541 ASCH ASC-1 homology or ASCH domain, a small beta-barrel domain found in all three kingdoms of life

Probab=99.83  E-value=9.2e-21  Score=151.47  Aligned_cols=100  Identities=13%  Similarity=0.015  Sum_probs=94.1

Q ss_pred             eeccccchHHHhcCCceEEEeecCccccCCCCCCEEEEce----eEEEEEEEEeecCCHHHHHhccCccccCCCCCCHHH
Q 022692          133 LHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILLNK----CMMLKVQSVCHYDSFSEMLEAESLVKVLPGVKTIEE  208 (293)
Q Consensus       133 M~L~e~yF~lIksGkKTIE~RLnDeKRq~IkvGD~I~F~k----~L~v~V~~Vr~Y~SF~eLLe~EgL~kvlPG~~SiEE  208 (293)
                      |++.+++|++|.+|+||+|+|+++++++.+++||.|+|.+    .+.++|++|+.|++| +++.++...+.++|..|+++
T Consensus         2 l~~~~~~~~lI~~G~Ktat~r~~~~~~~~~k~Gd~~i~~~~~~~~~~i~v~~V~~~~~f-~~~~~e~a~~eGegd~sl~~   80 (105)
T cd06541           2 LMFGDRYGQLVVSGRKTIEIRSLDIYEQLPKAGDYLIILDGQQPLAIAEVVKVEIMPMV-NELSEEQEQAEGEGDLTLLY   80 (105)
T ss_pred             ceechHHHHHHHCCCCEEEEEcchhcccCCCCCCEEEEecCCCcEEEEEEEEEEEEECH-HHccHHHHHHcCCCchhHHH
Confidence            6789999999999999999999999999999999999997    899999999999999 77777777788888889999


Q ss_pred             HHHHHHhcCChHHHhhcCCeEEEEEe
Q 022692          209 VLQVYKFIENSTQRRRKGPMVSLQYA  234 (293)
Q Consensus       209 gv~~yr~iYSkEkE~qyGV~VAIeI~  234 (293)
                      .++.+++||+++++.++|| ++|+++
T Consensus        81 ~~~~~~~~~~~~~~~~~~v-v~i~F~  105 (105)
T cd06541          81 ELKEHAAFFKEELAPDMLL-YAISFE  105 (105)
T ss_pred             HHHHHHHHhhHHhCCCCce-EEEEeC
Confidence            9999999999999999999 999985

ASCH resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation. The domain has been named after the ASC-1 protein, the activating signal cointegrator 1 or thyroid hormone receptor interactor protein 4 (TRIP4). ASC-1 is conserved in many eukaryotes and has been suggested to participate in a protein complex that interacts with RNA. It has been shown that ASC-1 mediates the interaction between various transciption factors and the basal transcriptional machinery.

>PF04266 ASCH: ASCH domain; InterPro: IPR007374 The ASCH domain adopts a beta-barrel fold similar to that of the PUA domain (IPR002478 from INTERPRO)

Probab=99.67  E-value=1.5e-16  Score=123.44  Aligned_cols=98  Identities=23%  Similarity=0.296  Sum_probs=87.0

Q ss_pred             eeccccchHHHhcCCceEEEeecCccccCCCCCCEEEEc------eeEEEEEEEEeecCCHHHHHhccCccccCCCCCCH
Q 022692          133 LHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILLN------KCMMLKVQSVCHYDSFSEMLEAESLVKVLPGVKTI  206 (293)
Q Consensus       133 M~L~e~yF~lIksGkKTIE~RLnDeKRq~IkvGD~I~F~------k~L~v~V~~Vr~Y~SF~eLLe~EgL~kvlPG~~Si  206 (293)
                      |.+.++||++|.+|+||+|+|+.++++..++.++.|+|+      -...++|++|+.+ +|++|.++.....   |. |+
T Consensus         1 Lsi~~~~~~~Il~G~Kt~e~R~~~~~~~~~~g~~~iv~~~~~~~~~~~~v~v~~V~~~-~~~e~~~~~a~~e---g~-s~   75 (105)
T PF04266_consen    1 LSIKPEYAELILSGKKTAEIRLWDEKLPKIRGDLVIVFNTDPDGKPVGIVEVTEVEVY-PFSELTEEHARLE---GE-SL   75 (105)
T ss_dssp             EEECHHHHHHHHTTSSCEEEECSTTTCCTTTTCEEEEETETTTTEEEEEEEEEEEEEE-EHHHHHHHHHHHH---CC--H
T ss_pred             CEechHHHHHHHCCCcEEEEEcccceeccCCCCEEEEEEEecCCcEEEEEEEEEEEEe-hhhhCCHHHHhHh---cc-CH
Confidence            678999999999999999999999999998888888876      2588999999999 9999999865543   33 99


Q ss_pred             HHHHHHHHhcCChHHHhhcCCeEEEEEeec
Q 022692          207 EEVLQVYKFIENSTQRRRKGPMVSLQYAFP  236 (293)
Q Consensus       207 EEgv~~yr~iYSkEkE~qyGV~VAIeI~lp  236 (293)
                      ++..+.+++||+++.+...|| ++|++++|
T Consensus        76 e~~~~~~~~~y~~~~~~~~~v-~~i~f~~v  104 (105)
T PF04266_consen   76 EEWREEHRDIYPREIEPDDGV-VAIEFEVV  104 (105)
T ss_dssp             HHHHHHHHHHCHHHHHCCCEE-EEEEEEEE
T ss_pred             HHHHHHHHHHccccccccceE-EEEEEEec
Confidence            999999999999999988999 99999986

It is thought to function as an RNA-binding domain during coactivation, RNA-processing and possibly during prokaryotic translation regulation [].; PDB: 1TE7_A 2Z0T_C 1WK2_A 2DP9_A 1T62_A 3S9X_A 2E5O_A 1XNE_A 3IUW_B 1S04_A.

>cd06552 ASCH_yqfb_like ASC-1 homology domain, subfamily similar to Escherichia coli Yqfb

Probab=98.98  E-value=1.9e-09  Score=84.11  Aligned_cols=94  Identities=18%  Similarity=0.183  Sum_probs=73.9

Q ss_pred             eeccccchHHHhcCCceEEEeecCccccCCCCCCEEEEc----eeEEEEEEEEeecCCHHHHHhccCccccCCCCCCHHH
Q 022692          133 LHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILLN----KCMMLKVQSVCHYDSFSEMLEAESLVKVLPGVKTIEE  208 (293)
Q Consensus       133 M~L~e~yF~lIksGkKTIE~RLnDeKRq~IkvGD~I~F~----k~L~v~V~~Vr~Y~SF~eLLe~EgL~kvlPG~~SiEE  208 (293)
                      |.+.++++++|.+|+||+++|..+  ++.+++||.+.+.    ....++|++|+. .+|.+| .++  .+-.-|..|.++
T Consensus         2 ~~f~~~~~~~I~sG~Kt~t~R~~~--~~~~~~Gd~~~~~~~~~~~~~~~v~~V~~-~~~~~l-~~~--~A~~eG~~s~~~   75 (100)
T cd06552           2 ILFFERYEEAILSGKKTATIRDGG--ESHLKPGDVVEVHTGERIFGEAEITSVEE-KTLGEL-TDE--DARQEGFPSLEE   75 (100)
T ss_pred             eechHHHHHHHHcCCCEEEEeCCC--ccCCCCCCEEEEEECCEEEEEEEEEEEEE-EEhhhC-CHH--HHHhcCCccHHH
Confidence            567789999999999999999975  4569999999987    368889999977 889884 443  334457779999


Q ss_pred             HHHHHHhcCChHHHhhcCCeEEEEEe
Q 022692          209 VLQVYKFIENSTQRRRKGPMVSLQYA  234 (293)
Q Consensus       209 gv~~yr~iYSkEkE~qyGV~VAIeI~  234 (293)
                      ..+.++++|+.++.. -=| .-|+++
T Consensus        76 ~~~~l~~~Y~~~~~~-~~v-~vi~F~   99 (100)
T cd06552          76 LKEALKEIYPGLKDD-DEV-YVIEFR   99 (100)
T ss_pred             HHHHHHHHcCCCCCC-CEE-EEEEEE
Confidence            999999999987622 224 566665

The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation.

>PF12961 DUF3850: Domain of Unknown Function with PDB structure (DUF3850)

Probab=98.43  E-value=5.3e-07  Score=70.41  Aligned_cols=53  Identities=21%  Similarity=0.422  Sum_probs=46.9

Q ss_pred             eeeeccccchHHHhcCCceEEEeecCccccCCCCCCEEEEc---------eeEEEEEEEEeecCC
Q 022692          131 FELHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILLN---------KCMMLKVQSVCHYDS  186 (293)
Q Consensus       131 heM~L~e~yF~lIksGkKTIE~RLnDeKRq~IkvGD~I~F~---------k~L~v~V~~Vr~Y~S  186 (293)
                      |++.+.+.||+.+.+|+||.|+|.||-.+   ++||.+.++         +.+.++|+-|-.|..
T Consensus         1 H~LKi~p~yF~~V~~G~KtfEiRkNDRdf---~VGD~L~L~E~~~~~YTGr~~~~~Ityi~~~~~   62 (72)
T PF12961_consen    1 HELKILPEYFEAVLSGRKTFEIRKNDRDF---QVGDILVLREWDNGEYTGREIEAEITYITDYEQ   62 (72)
T ss_pred             CceeecHHHHHHHHCCCceEEEEecCCCC---CCCCEEEEEEecCCCccccEEEEEEEEEeecCC
Confidence            78999999999999999999999999765   699999987         378899999877543

>PRK04980 hypothetical protein; Provisional

Probab=96.93  E-value=0.0055  Score=50.77  Aligned_cols=92  Identities=22%  Similarity=0.242  Sum_probs=62.9

Q ss_pred             eeeccccchHHHhcCCceEEEeecCccccCCCCCCEEEE-c---e--eEEEEEEEEeecCCHHHHHhccCccccCCCCCC
Q 022692          132 ELHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILL-N---K--CMMLKVQSVCHYDSFSEMLEAESLVKVLPGVKT  205 (293)
Q Consensus       132 eM~L~e~yF~lIksGkKTIE~RLnDeKRq~IkvGD~I~F-~---k--~L~v~V~~Vr~Y~SF~eLLe~EgL~kvlPG~~S  205 (293)
                      +|...++|-.+|-+|+||+-+|-  +.-...++||.+.- .   +  -..++|++|. +-+|.+|=++   .+..=|. |
T Consensus         4 ~itF~~r~~~~ILsGkKTiTiRd--~se~~~~~G~~~~V~~~e~g~~~c~ieI~sV~-~i~f~eLte~---hA~qEg~-s   76 (102)
T PRK04980          4 KITFFERFEADILAGRKTITIRD--ESESHFKPGDVLRVGTFEDDRYFCTIEVLSVS-PVTFDELNEK---HAEQENM-T   76 (102)
T ss_pred             eeeEHHHHHHHHHcCCceEEeeC--CcccCCCCCCEEEEEECCCCcEEEEEEEEEEE-EEehhhCCHH---HHHHhCC-C
Confidence            46678899999999999999998  44678899999886 3   1  2445555553 3456555443   1112233 7


Q ss_pred             HHHHHHHHHhcCChHHHhhcCCeEEEEEee
Q 022692          206 IEEVLQVYKFIENSTQRRRKGPMVSLQYAF  235 (293)
Q Consensus       206 iEEgv~~yr~iYSkEkE~qyGV~VAIeI~l  235 (293)
                      +++-.+.++++|+.+.+-     --|++++
T Consensus        77 L~elk~~i~~iYp~~~~l-----yvI~f~~  101 (102)
T PRK04980         77 LPELKQVIAEIYPNLDQL-----YVIEFKL  101 (102)
T ss_pred             HHHHHHHHHHHCCCCceE-----EEEEEEE
Confidence            999999999999963322     4455554

>COG2411 Uncharacterized conserved protein [Function unknown]

Probab=92.57  E-value=1.1  Score=41.11  Aligned_cols=116  Identities=21%  Similarity=0.224  Sum_probs=84.0

Q ss_pred             eeccccchHHHhcCCceEEEeecCccccCCCCCCEEEEce----eEEEEEEEEeecCCHHHHHhccCccccCCCCCCHHH
Q 022692          133 LHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILLNK----CMMLKVQSVCHYDSFSEMLEAESLVKVLPGVKTIEE  208 (293)
Q Consensus       133 M~L~e~yF~lIksGkKTIE~RLnDeKRq~IkvGD~I~F~k----~L~v~V~~Vr~Y~SF~eLLe~EgL~kvlPG~~SiEE  208 (293)
                      +.+..+|-+.|-+|+|+.-||+.   --..++|+.+....    --.++|++|+ |.--+++=+.   ++.+-|..|.||
T Consensus         9 l~f~gkY~~~ii~GkKr~TIR~G---~~~~k~g~eVyIh~~g~i~gkAkIk~V~-~KrV~ELTdE---DAr~DGF~sreE   81 (188)
T COG2411           9 LEFDGKYKDKIIDGKKRTTIRLG---KIVLKPGSEVYIHSGGYIIGKAKIKKVK-TKRVSELTDE---DARLDGFRSREE   81 (188)
T ss_pred             eeechHHHHHHhcCceeEEEecC---cccCCCCCEEEEEECCEEEEEEEEEEEE-EeeHhhhhHH---HHHhcccccHHH
Confidence            56788999999999999999998   34568999998872    2345555553 4455666554   555678899999


Q ss_pred             HHHHHHhcCChHHHhhcCCeEEEEEeeccCCCCCCCCcchhhhhHHHHH
Q 022692          209 VLQVYKFIENSTQRRRKGPMVSLQYAFPKWLLSPMLHWPAYCLDSVMWA  257 (293)
Q Consensus       209 gv~~yr~iYSkEkE~qyGV~VAIeI~lp~~~~~~m~~~~~~~~~~~~~~  257 (293)
                      .++.++++|+.=.-. -=| --|+++++...-.|..+-|.--.|-+--|
T Consensus        82 Li~~LkriYg~lr~e-d~V-TIi~Fe~v~~~d~~i~~~~y~g~dp~eIA  128 (188)
T COG2411          82 LIEELKRIYGELRDE-DIV-TIIEFEVVEKLDKPILDLPYEGRDPIEIA  128 (188)
T ss_pred             HHHHHHHHcCcCCCC-ceE-EEEEEEEehhccchhhhccCCCCCHHHHH
Confidence            999999999731111 124 67899999999998766666656655444

>COG3097 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.63  E-value=1.2  Score=37.44  Aligned_cols=91  Identities=18%  Similarity=0.200  Sum_probs=57.1

Q ss_pred             eccccchHHHhcCCceEEEeecCccccCCCCCCEEEEc----e--eEEEEEEEEeecCCHHHHHhccCccccCCCCCCHH
Q 022692          134 HVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILLN----K--CMMLKVQSVCHYDSFSEMLEAESLVKVLPGVKTIE  207 (293)
Q Consensus       134 ~L~e~yF~lIksGkKTIE~RLnDeKRq~IkvGD~I~F~----k--~L~v~V~~Vr~Y~SF~eLLe~EgL~kvlPG~~SiE  207 (293)
                      ....++=..|.+|+|||-||  |.--+..++||.+.-.    +  -...+|++|..- +|.+|=+.  -+.  --.-++.
T Consensus         7 TFf~rfe~dilagrKTITIR--D~SEShf~~g~vlrV~r~Ed~~~fc~I~vl~vspv-tld~l~e~--HAe--QEnm~L~   79 (106)
T COG3097           7 TFFQRFEADILAGRKTITIR--DKSESHFKPGDVLRVGRFEDDRYFCTIEVLAVSPV-TLDELTEK--HAE--QENMTLP   79 (106)
T ss_pred             eehhhccHHHhCCCceEEEe--ccchhcCCCCCEEEEEEecCCcEEEEEEEEEeccE-ehhhhhhh--hhh--hhcCCcH
Confidence            34556667899999999999  5556789999999733    1  234455555432 34444332  010  0122678


Q ss_pred             HHHHHHHhcCChHHHhhcCCeEEEEEeec
Q 022692          208 EVLQVYKFIENSTQRRRKGPMVSLQYAFP  236 (293)
Q Consensus       208 Egv~~yr~iYSkEkE~qyGV~VAIeI~lp  236 (293)
                      |.-+++..||+.+.+-  =|   |++.+.
T Consensus        80 eLk~vI~eIYP~~d~f--yV---I~f~L~  103 (106)
T COG3097          80 ELKKVIAEIYPNQDQF--YV---IEFQLA  103 (106)
T ss_pred             HHHHHHHHHCCCCcEE--EE---EEEEec
Confidence            8889999999976643  34   555443

>PRK12279 50S ribosomal protein L22/unknown domain fusion protein; Provisional

Probab=88.14  E-value=3.5  Score=40.30  Aligned_cols=113  Identities=12%  Similarity=-0.004  Sum_probs=76.6

Q ss_pred             HhhcChhhHHhhhhccceeeeccccchHHHhcC-CceEEEeecCccccCCCCCCEEEEc-----eeEE--EEEEEEeecC
Q 022692          114 ILNKGSSDLVDILKAVEFELHVQEPFFSFIKDG-LETVEGRCTISDYNSIGPGSVILLN-----KCMM--LKVQSVCHYD  185 (293)
Q Consensus       114 ~~~kG~~el~~~l~~v~heM~L~e~yF~lIksG-kKTIE~RLnDeKRq~IkvGD~I~F~-----k~L~--v~V~~Vr~Y~  185 (293)
                      ++|+|+ .....=.....=|-|.++|-+.|-+| +|++|.|-.-.+    ..+|+|+++     +.+.  .+|.+|.. +
T Consensus       175 ~~~~~~-~~~~~~~~~~vLLSIKPeyaekIl~G~~K~~EfRK~~~~----~~~~~VvIYaTsPvkkIVGef~i~~Ii~-~  248 (311)
T PRK12279        175 VVEKTA-SQKEEETTETIMISTSPKNAQVLFDDLEKNVIFYKTTPV----NKVLRVLVYVTSPTKKVVGEFDLESVEI-G  248 (311)
T ss_pred             HHHHhh-hhhcccCCcEEEEEeCHHHHHHHhCCCceEEEEEeccCC----CCCCEEEEEecCCCcEEEEEEEEEEEEe-C
Confidence            567888 33333344445588999999999999 699999986443    467899998     3332  35555555 7


Q ss_pred             CHHHHHhccCccccCCCCCCHHHHHHHHHhcCChHHHhhcCCeEEEEEeeccCCCCCCCC
Q 022692          186 SFSEMLEAESLVKVLPGVKTIEEVLQVYKFIENSTQRRRKGPMVSLQYAFPKWLLSPMLH  245 (293)
Q Consensus       186 SF~eLLe~EgL~kvlPG~~SiEEgv~~yr~iYSkEkE~qyGV~VAIeI~lp~~~~~~m~~  245 (293)
                      +-+.+-+..  .. ..|.+     -+.|..||.--+.+     +||+|.-|....+|+.+
T Consensus       249 ~P~~lW~k~--~~-~sGIs-----k~~F~~Yf~g~~~a-----~Ai~I~~~~~y~~Pi~L  295 (311)
T PRK12279        249 AISSIWRKY--GK-QSVIS-----KKEYDAYYEGKDKA-----HALVSKKAYKYRNPKDL  295 (311)
T ss_pred             CHHHHHHHH--hh-ccCCC-----HHHHHHHhCCCceE-----EEEEeCCceeCCCCCCH
Confidence            888888862  22 12443     13477888755544     79999988888887754

>cd06553 ASCH_Ef3133_like ASC-1 homology domain, subfamily similar to Enterococcus faecalis Ef3133

Probab=86.07  E-value=3.6  Score=35.09  Aligned_cols=87  Identities=9%  Similarity=0.055  Sum_probs=58.6

Q ss_pred             cccchHHHhcCCceEEEeec----CccccCCCCCCEEEEc-------eeEEEEEEEEeecCCHHHHHhccCccccCCCCC
Q 022692          136 QEPFFSFIKDGLETVEGRCT----ISDYNSIGPGSVILLN-------KCMMLKVQSVCHYDSFSEMLEAESLVKVLPGVK  204 (293)
Q Consensus       136 ~e~yF~lIksGkKTIE~RLn----DeKRq~IkvGD~I~F~-------k~L~v~V~~Vr~Y~SF~eLLe~EgL~kvlPG~~  204 (293)
                      .++.-++|.+|+||.-.|+.    ++.-.--++||.=+..       ..+.+.-+++.+|..-.+-.-.    +-+-|..
T Consensus        13 ad~l~~LVl~G~KtAT~s~~~~y~~e~e~~p~vG~~~Ivld~~g~p~cvi~~~~V~~~~f~~vt~~~A~----~EGegd~   88 (127)
T cd06553          13 ADELAALVLAGKKTATCSALALYEAEEEPLPKVGDYSIILDGQGKPVCIIETTEVEVVPFNDVTEEFAY----AEGEGDR   88 (127)
T ss_pred             HHHHHHHHHcCCcEEEEechhhcccCCccCCCCCcEEEEECCCCCEEEEEEEEEEEEEEcccCCHHHHH----HhCCCcc
Confidence            45678899999999999974    3444457899965544       2455566666777765443322    1234556


Q ss_pred             CHHHHHHHHHhcCChHHHhhcCC
Q 022692          205 TIEEVLQVYKFIENSTQRRRKGP  227 (293)
Q Consensus       205 SiEEgv~~yr~iYSkEkE~qyGV  227 (293)
                      |+++=-+..+.||+++-.. .|.
T Consensus        89 sl~~Wr~~h~~ff~~~~~~-~~~  110 (127)
T cd06553          89 SLEYWRKAHEAFFTRELEE-AGK  110 (127)
T ss_pred             CHHHHHHHHHHHHHHHHhh-cCC
Confidence            8998889999999877544 443

The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation.

>COG4933 Uncharacterized conserved protein [Function unknown]

Probab=84.77  E-value=4.7  Score=35.00  Aligned_cols=96  Identities=16%  Similarity=0.124  Sum_probs=65.4

Q ss_pred             eeccccchHHHhcCCceEEEeecCccccCCCCCCEEEEc---------eeEEEEEEEEeecCCHHHHHhccCccccCCCC
Q 022692          133 LHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILLN---------KCMMLKVQSVCHYDSFSEMLEAESLVKVLPGV  203 (293)
Q Consensus       133 M~L~e~yF~lIksGkKTIE~RLnDeKRq~IkvGD~I~F~---------k~L~v~V~~Vr~Y~SF~eLLe~EgL~kvlPG~  203 (293)
                      |-+.++|-+.|-+|.|+||+|=-.+..  +-.||++.-+         ..++.+-+++..=.|-..++..       +|.
T Consensus         1 mSIkPk~a~~Ifdg~K~velrR~~p~~--~~~~~~~~VY~TsP~~aVvGef~~e~V~~~~~~siw~~~~~-------~~~   71 (124)
T COG4933           1 MSIKPKFAEAIFDGVKKVELRRITPVP--IVEESTVIVYATSPVKAVVGEFTAERVEQVAIESIWRKAGK-------SGS   71 (124)
T ss_pred             CccchhhHHHHhcCcceEEEEEecCCC--cccCcEEEEEecCchhheEEEEEeeeEEEcchHHHHHHhcc-------ccc
Confidence            567889999999999999999777654  4557877755         2344444444444555555554       222


Q ss_pred             CCHHHHHHHHHhcCChHHHhhcCCeEEEEEeeccCCCCCCCC
Q 022692          204 KTIEEVLQVYKFIENSTQRRRKGPMVSLQYAFPKWLLSPMLH  245 (293)
Q Consensus       204 ~SiEEgv~~yr~iYSkEkE~qyGV~VAIeI~lp~~~~~~m~~  245 (293)
                      -++   -++|.+|+.--+++     .||++.-|-+--.|.++
T Consensus        72 i~~---~~e~~~Y~~G~k~A-----~ai~~~~p~~y~~P~~L  105 (124)
T COG4933          72 IKI---GAEYLEYFEGAKEA-----HAIEVSKPRRYTRPVTL  105 (124)
T ss_pred             ccc---hHHHHHHHhcccee-----EEEEeCCceecCCCcCH
Confidence            121   35688888877776     89999988887777764

>COG1935 Uncharacterized conserved protein [Function unknown]

Probab=81.10  E-value=3.2  Score=35.89  Aligned_cols=43  Identities=21%  Similarity=0.369  Sum_probs=35.2

Q ss_pred             HHHhcCCceEEEee--cCccccCCCCCCEEEEc-----------eeEEEEEEEEee
Q 022692          141 SFIKDGLETVEGRC--TISDYNSIGPGSVILLN-----------KCMMLKVQSVCH  183 (293)
Q Consensus       141 ~lIksGkKTIE~RL--nDeKRq~IkvGD~I~F~-----------k~L~v~V~~Vr~  183 (293)
                      ++++++.+|||||=  |..---++++||.+-.+           .-+.++|..+..
T Consensus        16 ~l~~~~~rTieiRsa~N~~tv~rl~~GDlVFlT~~~~~Dl~~GtsGiiAkV~~vev   71 (122)
T COG1935          16 SLLRNPIRTIEIRSARNLLTVLRLHEGDLVFLTSTSLEDLTKGTSGIIAKVRRVEV   71 (122)
T ss_pred             HHHhCCceEEEEEcccchHHhhcCCCCCEEEEehhHhhHhhcCcceeEEEEEEEEE
Confidence            57899999999994  55777889999999887           257888887765

>PRK11507 ribosome-associated protein; Provisional

Probab=80.57  E-value=2.9  Score=32.86  Aligned_cols=32  Identities=19%  Similarity=0.247  Sum_probs=28.2

Q ss_pred             HHhcCCceEEEeecCccccCCCCCCEEEEcee
Q 022692          142 FIKDGLETVEGRCTISDYNSIGPGSVILLNKC  173 (293)
Q Consensus       142 lIksGkKTIE~RLnDeKRq~IkvGD~I~F~k~  173 (293)
                      +|++|.=.|-+-+.+.++++|.+||+|.|.+.
T Consensus        33 ~I~eg~V~VNGeve~rRgkKl~~GD~V~~~g~   64 (70)
T PRK11507         33 AIAEGQVKVDGAVETRKRCKIVAGQTVSFAGH   64 (70)
T ss_pred             HHHcCceEECCEEecccCCCCCCCCEEEECCE
Confidence            58889888888888899999999999999963

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	293
1s04_A	110	Solution Nmr Structure Of Protein Pf0455 From Pyroc		3e-12
2z0t_A	109	Crystal Structure Of Hypothetical Protein Ph0355 Le		5e-12

>pdb|1S04|A Chain A, Solution Nmr Structure Of Protein Pf0455 From Pyrococcus Furiosus. Northeast Structural Genomics Consortium Target Pfr13 Length = 110

Iteration: 1
 Score = 68.9 bits (167), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 38/99 (38%), Positives = 58/99 (58%), Gaps = 1/99 (1%)
Query: 129 VEFELHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILLNKCMM-LKVQSVCHYDSF 187
           +E+E+ +QE F   IK   + +EGR        I PG VI      + ++V+++  Y+SF
Sbjct: 1   MEWEMGLQEEFLELIKLRKKKIEGRLYDEKRRQIKPGDVISFEGGKLKVRVKAIRVYNSF 60
Query: 188 SEMLEAESLVKVLPGVKTIEEVLQVYKFIENSTQRRRKG 226
            EMLE E L  VLPGVK+IEE +QVY+   +  + ++ G
Sbjct: 61  REMLEKEGLENVLPGVKSIEEGIQVYRRFYDEEKEKKYG 99

>pdb|2Z0T|A Chain A, Crystal Structure Of Hypothetical Protein Ph0355 Length = 109

Iteration: 1
 Score = 68.2 bits (165), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 35/97 (36%), Positives = 56/97 (57%), Gaps = 1/97 (1%)
Query: 131 FELHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILLNKCMM-LKVQSVCHYDSFSE 189
           +E+ +QE +   IK G + +EGR        I PG +I+     + +KV+ +  Y SF E
Sbjct: 3   WEMGLQEEYIELIKAGKKKIEGRLYDEKRRQIKPGDIIIFEGGKLKVKVKGIRVYSSFKE 62
Query: 190 MLEAESLVKVLPGVKTIEEVLQVYKFIENSTQRRRKG 226
           MLE E +  VLPGVK+IEE ++VY+   +  + ++ G
Sbjct: 63  MLEKEGIENVLPGVKSIEEGVKVYRQFYDEEREKKYG 99

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	293
1xne_A	113	Hypothetical protein PF0469; GFT structural genomi	2e-25
2z0t_A	109	Putative uncharacterized protein PH0355; alpha/bet	1e-24

>1xne_A Hypothetical protein PF0469; GFT structural genomics, protein structure initiative, NESG, PFR14, alpha and beta protein; NMR {Pyrococcus furiosus} SCOP: b.122.1.6 Length = 113

 Score = 96.8 bits (241), Expect = 2e-25
 Identities = 21/97 (21%), Positives = 45/97 (46%)

Query: 130 EFELHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILLNKCMMLKVQSVCHYDSFSE 189
            + L++++ +   +K G + +E R        I  G  I+ N  +  +V  V  Y++F +
Sbjct: 3   VYRLYLKDEYLEMVKSGKKRIEVRVAYPQLKDIKRGDKIIFNDLIPAEVVEVKKYETFRQ 62

Query: 190 MLEAESLVKVLPGVKTIEEVLQVYKFIENSTQRRRKG 226
           +L  E + K+ P   + E+ L+ +  +    +  R G
Sbjct: 63  VLREEPIDKIFPDKPSFEKALKRFHNMYPKWKEYRYG 99

>2z0t_A Putative uncharacterized protein PH0355; alpha/beta protein, RNA binding protein, structural genomics, NPPSFA; 1.80A {Pyrococcus horikoshii} PDB: 1s04_A Length = 109

 Score = 94.5 bits (235), Expect = 1e-24
 Identities = 35/99 (35%), Positives = 58/99 (58%), Gaps = 1/99 (1%)

Query: 129 VEFELHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILL-NKCMMLKVQSVCHYDSF 187
           +++E+ +QE +   IK G + +EGR        I PG +I+     + +KV+ +  Y SF
Sbjct: 1   MKWEMGLQEEYIELIKAGKKKIEGRLYDEKRRQIKPGDIIIFEGGKLKVKVKGIRVYSSF 60

Query: 188 SEMLEAESLVKVLPGVKTIEEVLQVYKFIENSTQRRRKG 226
            EMLE E +  VLPGVK+IEE ++VY+   +  + ++ G
Sbjct: 61  KEMLEKEGIENVLPGVKSIEEGVKVYRQFYDEEREKKYG 99

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	293
1xne_A	113	Hypothetical protein PF0469; GFT structural genomi	100.0
2z0t_A	109	Putative uncharacterized protein PH0355; alpha/bet	100.0
3iuw_A	83	Activating signal cointegrator; NP_814290.1, struc	99.31
1te7_A	103	Hypothetical UPF0267 protein YQFB; alpha + beta, s	98.3
2kku_A	161	Uncharacterized protein; alpha/beta protein, struc	96.26
2dp9_A	124	Hypothetical protein TTHA0113; jellyroll, structur	94.85

>1xne_A Hypothetical protein PF0469; GFT structural genomics, protein structure initiative, NESG, PFR14, alpha and beta protein; NMR {Pyrococcus furiosus} SCOP: b.122.1.6

Probab=100.00  E-value=2e-41  Score=277.44  Aligned_cols=111  Identities=19%  Similarity=0.376  Sum_probs=107.9

Q ss_pred             cceeeeccccchHHHhcCCceEEEeecCccccCCCCCCEEEEceeEEEEEEEEeecCCHHHHHhccCccccCCCCCCHHH
Q 022692          129 VEFELHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILLNKCMMLKVQSVCHYDSFSEMLEAESLVKVLPGVKTIEE  208 (293)
Q Consensus       129 v~heM~L~e~yF~lIksGkKTIE~RLnDeKRq~IkvGD~I~F~k~L~v~V~~Vr~Y~SF~eLLe~EgL~kvlPG~~SiEE  208 (293)
                      ..|+|+|+++||++|++|+||||||+||+||++|++||+|+|++++.++|++|++|+||++||++||+++|+||++|+||
T Consensus         2 ~~h~m~l~~~~F~~I~sG~KtiEiR~nd~~~~~i~vGD~I~f~~~l~~~V~~v~~Y~sF~~ll~~e~~~~v~p~~~s~ee   81 (113)
T 1xne_A            2 KVYRLYLKDEYLEMVKSGKKRIEVRVAYPQLKDIKRGDKIIFNDLIPAEVVEVKKYETFRQVLREEPIDKIFPDKPSFEK   81 (113)
T ss_dssp             CEEEECCCHHHHHHHHHTCCCEEECCCTTTTTTCCTTCEEEETTTEEEEEEEEEECSSHHHHHHHSCHHHHCSSCCCHHH
T ss_pred             ceEEEecChHHHHHHHcCCcEEEEEecchhhhccCCCCEEEEccceEEEEEEEEecCCHHHHHHhcCHHhcCCCCCCHHH
Confidence            36999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCChHHHhhcCCeEEEEEeeccCCC
Q 022692          209 VLQVYKFIENSTQRRRKGPMVSLQYAFPKWLL  240 (293)
Q Consensus       209 gv~~yr~iYSkEkE~qyGV~VAIeI~lp~~~~  240 (293)
                      |+++||+||++|||++||| |||+|++.+|.+
T Consensus        82 ~~~~~~~~Y~~e~E~~~GV-vaI~i~~~~~~~  112 (113)
T 1xne_A           82 ALKRFHNMYPKWKEYRYGV-LAIKFRVLGRDK  112 (113)
T ss_dssp             HHHHHTTSSSSSCCCCCCC-EEEEEEESSSCC
T ss_pred             HHHHHHHhCCHHHHHhcCE-EEEEEEEccccc
Confidence            9999999999999999999 999999988654

>2z0t_A Putative uncharacterized protein PH0355; alpha/beta protein, RNA binding protein, structural genomics, NPPSFA; 1.80A {Pyrococcus horikoshii} PDB: 1s04_A

Probab=100.00  E-value=5e-41  Score=273.79  Aligned_cols=106  Identities=34%  Similarity=0.594  Sum_probs=103.8

Q ss_pred             ceeeeccccchHHHhcCCceEEEeecCccccCCCCCCEEEEce-eEEEEEEEEeecCCHHHHHhccCccccCCCCCCHHH
Q 022692          130 EFELHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILLNK-CMMLKVQSVCHYDSFSEMLEAESLVKVLPGVKTIEE  208 (293)
Q Consensus       130 ~heM~L~e~yF~lIksGkKTIE~RLnDeKRq~IkvGD~I~F~k-~L~v~V~~Vr~Y~SF~eLLe~EgL~kvlPG~~SiEE  208 (293)
                      .|+|+|+++||++|++|+||||||+||+||++|++||+|+||+ ++.|+|++|++|+||++||++||+++|+||++|+||
T Consensus         2 ~h~m~l~~~~f~~I~~G~KtiEiRlnd~k~~~ikvGD~I~f~~~~l~~~V~~v~~Y~sF~~ll~~e~~~~~~p~~~s~ee   81 (109)
T 2z0t_A            2 KWEMGLQEEYIELIKAGKKKIEGRLYDEKRRQIKPGDIIIFEGGKLKVKVKGIRVYSSFKEMLEKEGIENVLPGVKSIEE   81 (109)
T ss_dssp             EEEECCCHHHHHHHHTTSCCEEEEECCTTGGGCCTTCEEEEGGGTEEEEEEEEEEESCHHHHHHHHCHHHHSTTCCCHHH
T ss_pred             eEEEEcChHHHHHHHcCCCEEEEEecchhhhcCCCCCEEEECCCEEEEEEEEEEccCCHHHHHHhcChhhcCCCCCCHHH
Confidence            5999999999999999999999999999999999999999995 899999999999999999999999999999999999


Q ss_pred             HHHHHHhcCChHHHhhcCCeEEEEEeec
Q 022692          209 VLQVYKFIENSTQRRRKGPMVSLQYAFP  236 (293)
Q Consensus       209 gv~~yr~iYSkEkE~qyGV~VAIeI~lp  236 (293)
                      |+++||+|||+|||++||| |||+|++.
T Consensus        82 ~v~~~~~~Y~~e~E~~~GV-laI~i~~~  108 (109)
T 2z0t_A           82 GVKVYRQFYDEEREKKYGV-VAIEIEPI  108 (109)
T ss_dssp             HHHHHHTTCCHHHHHHHCE-EEEEEEEC
T ss_pred             HHHHHHHhCCHHHHHhcCE-EEEEEEEc
Confidence            9999999999999999999 99999974

>3iuw_A Activating signal cointegrator; NP_814290.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 1.58A {Enterococcus faecalis V583}

Probab=99.31  E-value=2.6e-12  Score=100.87  Aligned_cols=55  Identities=20%  Similarity=0.315  Sum_probs=48.9

Q ss_pred             hccceeeeccccchHHHhcCCceEEEeecCccccCCCCCCEEEEc---------eeEEEEEEEEeec
Q 022692          127 KAVEFELHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILLN---------KCMMLKVQSVCHY  184 (293)
Q Consensus       127 ~~v~heM~L~e~yF~lIksGkKTIE~RLnDeKRq~IkvGD~I~F~---------k~L~v~V~~Vr~Y  184 (293)
                      .+..|+|+|+++||++|++|+||+|+|+||.+   +++||.|+|+         +.+.++|+.|.-|
T Consensus         6 ~~~~H~lki~~~~F~~V~~G~Kt~EiR~nDr~---~~vGD~l~l~E~~~g~yTGr~i~~~Vt~i~d~   69 (83)
T 3iuw_A            6 HPTIHTLKIETEFFKAVKERRKTFEIRKNDRN---FQVGDILILEEYMNGMYLDDECEAEVIYITDY   69 (83)
T ss_dssp             CCCEEEEEEEHHHHHHHHTTSCCEEEEECCSC---CCTTCEEEEEEEETTEEEEEEEEEEEEEEECT
T ss_pred             cceEEEEEcCHHHHHHHHcCCcEEEEEecccC---CCCCCEEEEEEccCCCccCcEEEEEEEEEccc
Confidence            46679999999999999999999999999954   9999999986         4788999999544

>1te7_A Hypothetical UPF0267 protein YQFB; alpha + beta, structural genomics, PSI, protein structure initiative; NMR {Escherichia coli} SCOP: b.122.1.7

Probab=98.30  E-value=7.6e-07  Score=70.47  Aligned_cols=92  Identities=14%  Similarity=0.150  Sum_probs=68.1

Q ss_pred             eeeccccchHHHhcCCceEEEeecCccccCCCCCCEEEE--c--e--eEEEEEEEEeecCCHHHHHhccCccccCCCCCC
Q 022692          132 ELHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILL--N--K--CMMLKVQSVCHYDSFSEMLEAESLVKVLPGVKT  205 (293)
Q Consensus       132 eM~L~e~yF~lIksGkKTIE~RLnDeKRq~IkvGD~I~F--~--k--~L~v~V~~Vr~Y~SF~eLLe~EgL~kvlPG~~S  205 (293)
                      .|.+.+++.++|.+|+||+.+|.  .+....++||.+..  +  +  ...++|++|+ +..|.++=++   .+..-|. |
T Consensus         5 ~i~f~~~~~~~Il~G~KT~T~R~--~~e~~~~~Gd~~~v~~~~~~~~~~~i~vt~V~-~~~~~eitee---~A~~EG~-s   77 (103)
T 1te7_A            5 DITFFQRFQDDILAGRKTITIRD--ESESHFKTGDVLRVGRFEDDGYFCTIEVTATS-TVTLDTLTEK---HAEQENM-T   77 (103)
T ss_dssp             SCCCCHHHHHHHHTCCCEEEEEC--GGGCCCCTTSEEEEEETTTEEEEEEEEEEEEE-EECSTTTSTH---HHHHTTS-C
T ss_pred             EEEEcHHHHHHHHCCCCEEEEeC--CCCCCCCCCCEEEEEECCCCcEEEEEEEEEEE-EEcHHHhCHH---HHHHcCC-C
Confidence            47788999999999999999997  34556899999977  3  2  3556777765 5566666443   2223444 8


Q ss_pred             HHHHHHHHHhcCChHHHhhcCCeEEEEEee
Q 022692          206 IEEVLQVYKFIENSTQRRRKGPMVSLQYAF  235 (293)
Q Consensus       206 iEEgv~~yr~iYSkEkE~qyGV~VAIeI~l  235 (293)
                      +++-.+.+++||+.+.+    | ..|++++
T Consensus        78 l~~~~~~~~~iYp~~~~----v-~vI~F~~  102 (103)
T 1te7_A           78 LTELKKVIADIYPGQTQ----F-YVIEFKC  102 (103)
T ss_dssp             HHHHHHHHHHHCSCCSC----E-EEEEEEC
T ss_pred             HHHHHHHHHHHcCCCCC----E-EEEEEEE
Confidence            99999999999985533    7 8888886

>2kku_A Uncharacterized protein; alpha/beta protein, structural genomics, PSI-2, protein STRU initiative; NMR {Archaeoglobus fulgidus}

Probab=96.26  E-value=0.047  Score=47.53  Aligned_cols=98  Identities=12%  Similarity=0.129  Sum_probs=68.5

Q ss_pred             eeccccchHHHh-cCCceEEEeecCccccCCCCCCEEEEce-------eEEEEEEEEeecCCHHHHHhccCccccCCCCC
Q 022692          133 LHVQEPFFSFIK-DGLETVEGRCTISDYNSIGPGSVILLNK-------CMMLKVQSVCHYDSFSEMLEAESLVKVLPGVK  204 (293)
Q Consensus       133 M~L~e~yF~lIk-sGkKTIE~RLnDeKRq~IkvGD~I~F~k-------~L~v~V~~Vr~Y~SF~eLLe~EgL~kvlPG~~  204 (293)
                      |-+.++|-+.|- +|+|++ +|=++ -+.++++||.|+|+.       .=.++|.+|-.|++-.+|.+..+-.   .|.+
T Consensus        31 lSIkpey~~rIf~~GkK~f-lrr~~-v~~~l~~Gd~vviYaS~P~~~iVGea~I~~Ii~~~~P~~lWe~~~d~---~gIT  105 (161)
T 2kku_A           31 YPIPKRFMDRFFKKGKDVF-VKPAT-VWKELKPGMKFVFYQSHEDTGFVGEARIKRVVLSENPMQFFETFGDR---VFLT  105 (161)
T ss_dssp             ECCSSSTTHHHHHHSCEEE-EESSC-SCTTCCTTEEEEECCCSTTCBCCEEEEEEEEEEESCTHHHHHHTSTT---BSSC
T ss_pred             EecCHHHHHHHHhcCceEE-EeccC-cccccCCCCEEEEEEcCCCcEEEEEEEEEEEEecCCHHHHHHHhCcc---cCcC
Confidence            567899999999 999999 76322 566899999999992       2457899999999999999985332   2443


Q ss_pred             CHHHHHHHHHhcCChHHHhhcCC---------eEEEEEeeccCCCCC
Q 022692          205 TIEEVLQVYKFIENSTQRRRKGP---------MVSLQYAFPKWLLSP  242 (293)
Q Consensus       205 SiEEgv~~yr~iYSkEkE~qyGV---------~VAIeI~lp~~~~~~  242 (293)
                        ++.   +++||. .++ .||-         ++||+|+-+.....|
T Consensus       106 --kee---f~~Yy~-g~~-~w~~~~~~~~~~~~~aI~L~~Vrky~~p  145 (161)
T 2kku_A          106 --KDE---LKEYMK-SQE-RWGRRRESKKKKLWMAIELEDVKKYDKP  145 (161)
T ss_dssp             --HHH---HHHHHH-HHH-HTSSCCCCSSCCCEEEEEEEEEEECCSC
T ss_pred             --HHH---HHHHhc-ccc-cccccccccccccEEEEEecceEeCCCC
Confidence              333   444443 233 2443         589999855444444

>2dp9_A Hypothetical protein TTHA0113; jellyroll, structural genomics, NPPSFA, national project on structural and functional analyses; 1.90A {Thermus thermophilus} SCOP: b.122.1.5 PDB: 1wk2_A

Probab=94.85  E-value=0.036  Score=45.05  Aligned_cols=94  Identities=20%  Similarity=0.089  Sum_probs=58.4

Q ss_pred             eeeccccchHHHhcCCceEEEeecCccccCCCCCCEEEEc--ee--EEEEEEEEeecCCHHHHHhccCccccCCCCCCHH
Q 022692          132 ELHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILLN--KC--MMLKVQSVCHYDSFSEMLEAESLVKVLPGVKTIE  207 (293)
Q Consensus       132 eM~L~e~yF~lIksGkKTIE~RLnDeKRq~IkvGD~I~F~--k~--L~v~V~~Vr~Y~SF~eLLe~EgL~kvlPG~~SiE  207 (293)
                      -|-+.++|-++|-+|.||+|+|--..++    .|. |...  ..  =.++|+++..+.|-+++.+.  .++.  +. + +
T Consensus        10 ~LSIkqpyA~lIl~G~K~~E~R~~~t~~----rg~-v~IhatG~ivG~~~i~d~~g~~~~eel~~~--~~~~--~~-~-~   78 (124)
T 2dp9_A           10 GLIVREPYASLIVDGRKVWEIRRRKTRH----RGP-LGIVSGGRLIGQADLVGVEGPFSVEELLAH--QEKH--LA-E-E   78 (124)
T ss_dssp             EEECCTTHHHHHHTTCCCEEEESSCCCC----CEE-EEEEETTEEEEEEEEEEEEEEECHHHHGGG--HHHH--CC-C-H
T ss_pred             EEEEecHHHHHHHCCCceEEeeCCCCCC----CCE-EEEEECCCEEEEEEEEEEecCCCHHHHHHH--hhhc--CC-C-H
Confidence            3668999999999999999999875443    254 5554  33  35577787756666666554  1221  11 1 2


Q ss_pred             HHHHHHHhcCChHHHhhcCCeEEEEEeeccCCCCCCCC
Q 022692          208 EVLQVYKFIENSTQRRRKGPMVSLQYAFPKWLLSPMLH  245 (293)
Q Consensus       208 Egv~~yr~iYSkEkE~qyGV~VAIeI~lp~~~~~~m~~  245 (293)
                      +....    |...+    .. .|+.++-|..+-.|++.
T Consensus        79 ~~~~~----y~~g~----~~-ya~~l~~~~~l~~Pi~~  107 (124)
T 2dp9_A           79 AFLRA----YAKDE----PL-YAWVLENAFRYEKPLHV  107 (124)
T ss_dssp             HHHHH----HHTTS----CE-EEEEEEEEEEEEEEEEC
T ss_pred             HHhhh----hhcCC----ce-EEEEECCcEEcCCCccc
Confidence            21211    11111    25 89999988877777665

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	293
d1xnea_	113	b.122.1.6 (A:) Hypothetical protein PF0470 {Pyroco	4e-27
d1s04a_	110	b.122.1.6 (A:) Hypothetical protein PF0455 {Pyroco	2e-26

>d1xnea_ b.122.1.6 (A:) Hypothetical protein PF0470 {Pyrococcus furiosus [TaxId: 2261]} Length = 113

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: ProFAR isomerase associated domain
domain: Hypothetical protein PF0470
species: Pyrococcus furiosus [TaxId: 2261]

 Score =  100 bits (250), Expect = 4e-27
 Identities = 21/96 (21%), Positives = 45/96 (46%)

Query: 131 FELHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILLNKCMMLKVQSVCHYDSFSEM 190
           + L++++ +   +K G + +E R        I  G  I+ N  +  +V  V  Y++F ++
Sbjct: 4   YRLYLKDEYLEMVKSGKKRIEVRVAYPQLKDIKRGDKIIFNDLIPAEVVEVKKYETFRQV 63

Query: 191 LEAESLVKVLPGVKTIEEVLQVYKFIENSTQRRRKG 226
           L  E + K+ P   + E+ L+ +  +    +  R G
Sbjct: 64  LREEPIDKIFPDKPSFEKALKRFHNMYPKWKEYRYG 99

>d1s04a_ b.122.1.6 (A:) Hypothetical protein PF0455 {Pyrococcus furiosus [TaxId: 2261]} Length = 110

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: ProFAR isomerase associated domain
domain: Hypothetical protein PF0455
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 98.2 bits (245), Expect = 2e-26
 Identities = 38/99 (38%), Positives = 58/99 (58%), Gaps = 1/99 (1%)

Query: 129 VEFELHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILL-NKCMMLKVQSVCHYDSF 187
           +E+E+ +QE F   IK   + +EGR        I PG VI      + ++V+++  Y+SF
Sbjct: 1   MEWEMGLQEEFLELIKLRKKKIEGRLYDEKRRQIKPGDVISFEGGKLKVRVKAIRVYNSF 60

Query: 188 SEMLEAESLVKVLPGVKTIEEVLQVYKFIENSTQRRRKG 226
            EMLE E L  VLPGVK+IEE +QVY+   +  + ++ G
Sbjct: 61  REMLEKEGLENVLPGVKSIEEGIQVYRRFYDEEKEKKYG 99

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	293
d1xnea_	113	Hypothetical protein PF0470 {Pyrococcus furiosus [	100.0
d1s04a_	110	Hypothetical protein PF0455 {Pyrococcus furiosus [	100.0
d1te7a_	103	Hypothetical protein YqfB {Escherichia coli [TaxId	94.63
d2dp9a1	120	Hypothetical protein TTHA0113 {Thermus thermophilu	80.89

>d1xnea_ b.122.1.6 (A:) Hypothetical protein PF0470 {Pyrococcus furiosus [TaxId: 2261]}

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: ProFAR isomerase associated domain
domain: Hypothetical protein PF0470
species: Pyrococcus furiosus [TaxId: 2261]

Probab=100.00  E-value=5.7e-43  Score=285.33  Aligned_cols=108  Identities=19%  Similarity=0.410  Sum_probs=106.0

Q ss_pred             ceeeeccccchHHHhcCCceEEEeecCccccCCCCCCEEEEceeEEEEEEEEeecCCHHHHHhccCccccCCCCCCHHHH
Q 022692          130 EFELHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILLNKCMMLKVQSVCHYDSFSEMLEAESLVKVLPGVKTIEEV  209 (293)
Q Consensus       130 ~heM~L~e~yF~lIksGkKTIE~RLnDeKRq~IkvGD~I~F~k~L~v~V~~Vr~Y~SF~eLLe~EgL~kvlPG~~SiEEg  209 (293)
                      .|+|+|+++||++|++|+|||||||||+||++|++||+|+|++++.|+|++|++|+||++||++|++++++||++|+|+|
T Consensus         3 ~~~m~l~~~~f~~Ik~G~K~iE~Rl~d~kr~~ik~GD~I~F~~~~~~kV~~v~~Y~sF~ell~~e~l~~vlp~~~s~eeg   82 (113)
T d1xnea_           3 VYRLYLKDEYLEMVKSGKKRIEVRVAYPQLKDIKRGDKIIFNDLIPAEVVEVKKYETFRQVLREEPIDKIFPDKPSFEKA   82 (113)
T ss_dssp             EEEECCCHHHHHHHHHTCCCEEECCCTTTTTTCCTTCEEEETTTEEEEEEEEEECSSHHHHHHHSCHHHHCSSCCCHHHH
T ss_pred             eEEEecCchhHHHHHcCCCEEEEEccchhHhhCCCCCEEEEEeeEEEEEEEEEEcCCHHHHHHHcCHHhhCCCCCCHHHH
Confidence            59999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCChHHHhhcCCeEEEEEeeccC
Q 022692          210 LQVYKFIENSTQRRRKGPMVSLQYAFPKW  238 (293)
Q Consensus       210 v~~yr~iYSkEkE~qyGV~VAIeI~lp~~  238 (293)
                      +++||+|||+|||++||| |||+|++++.
T Consensus        83 l~~~~~~Ys~E~E~k~GV-vAI~i~lI~~  110 (113)
T d1xnea_          83 LKRFHNMYPKWKEYRYGV-LAIKFRVLGR  110 (113)
T ss_dssp             HHHHTTSSSSSCCCCCCC-EEEEEEESSS
T ss_pred             HHHHHHHCCHHHHHhcCE-EEEEEEEcCC
Confidence            999999999999999999 9999998764

>d1s04a_ b.122.1.6 (A:) Hypothetical protein PF0455 {Pyrococcus furiosus [TaxId: 2261]}

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: ProFAR isomerase associated domain
domain: Hypothetical protein PF0455
species: Pyrococcus furiosus [TaxId: 2261]

Probab=100.00  E-value=1.2e-42  Score=282.22  Aligned_cols=108  Identities=36%  Similarity=0.581  Sum_probs=105.5

Q ss_pred             ceeeeccccchHHHhcCCceEEEeecCccccCCCCCCEEEEc-eeEEEEEEEEeecCCHHHHHhccCccccCCCCCCHHH
Q 022692          130 EFELHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILLN-KCMMLKVQSVCHYDSFSEMLEAESLVKVLPGVKTIEE  208 (293)
Q Consensus       130 ~heM~L~e~yF~lIksGkKTIE~RLnDeKRq~IkvGD~I~F~-k~L~v~V~~Vr~Y~SF~eLLe~EgL~kvlPG~~SiEE  208 (293)
                      +|+|+|+++||++|++|+|||||||||+||++|++||+|.|+ +++.|+|++|++|+||++||++||+++++||++|+|+
T Consensus         2 ~~~m~L~~~~F~~Ik~G~K~IE~Rl~d~kr~~ik~GD~I~F~~~~l~vkV~~v~~y~sF~ell~~e~l~~~~p~~~s~ee   81 (110)
T d1s04a_           2 EWEMGLQEEFLELIKLRKKKIEGRLYDEKRRQIKPGDVISFEGGKLKVRVKAIRVYNSFREMLEKEGLENVLPGVKSIEE   81 (110)
T ss_dssp             CEEECCCHHHHHHHHHTTSSCCCCCCCHHHHHCCSSSCEEETTTTEEEEEEECCCBSCHHHHHHHTTSTTTSTTCSCHHH
T ss_pred             eEEEecCcchHHHHHcCCCEEEEEechhhHhhCCCCCEEEEeCCeEEEEEEEEEEcCCHHHHHHhcCccccCCCCCCHHH
Confidence            699999999999999999999999999999999999999996 7899999999999999999999999999999999999


Q ss_pred             HHHHHHhcCChHHHhhcCCeEEEEEeeccC
Q 022692          209 VLQVYKFIENSTQRRRKGPMVSLQYAFPKW  238 (293)
Q Consensus       209 gv~~yr~iYSkEkE~qyGV~VAIeI~lp~~  238 (293)
                      |+++||+|||+|||++||| |||+|+++.|
T Consensus        82 ~l~~~~~~Ys~E~E~~yGV-vAI~i~~I~~  110 (110)
T d1s04a_          82 GIQVYRRFYDEEKEKKYGV-VAIEIEPLEY  110 (110)
T ss_dssp             HHHHHHHHSCHHHHHHTCB-CCCEEECTTC
T ss_pred             HHHHHHHHCCHHHHHhcCE-EEEEEEEecC
Confidence            9999999999999999999 9999998865

>d1te7a_ b.122.1.7 (A:) Hypothetical protein YqfB {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: yqfB-like
domain: Hypothetical protein YqfB
species: Escherichia coli [TaxId: 562]

Probab=94.63  E-value=0.064  Score=41.83  Aligned_cols=88  Identities=18%  Similarity=0.190  Sum_probs=57.9

Q ss_pred             eeccccchHHHhcCCceEEEeecCccccCCCCCCEEE-Ec---e--eEEEEEEEEe--ecCCHHHH-HhccCccccCCCC
Q 022692          133 LHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVIL-LN---K--CMMLKVQSVC--HYDSFSEM-LEAESLVKVLPGV  203 (293)
Q Consensus       133 M~L~e~yF~lIksGkKTIE~RLnDeKRq~IkvGD~I~-F~---k--~L~v~V~~Vr--~Y~SF~eL-Le~EgL~kvlPG~  203 (293)
                      |.-.+++=..|-+|+|||-||  |+--...+||+.+. |+   +  -...+|.+|.  .|+...+. -++|        .
T Consensus         6 ITFFeRfe~dIlsGkKTITIR--D~SEshy~pG~~v~V~t~E~~~~fc~I~IlsV~pi~fd~Lne~HA~QE--------n   75 (103)
T d1te7a_           6 ITFFQRFQDDILAGRKTITIR--DESESHFKTGDVLRVGRFEDDGYFCTIEVTATSTVTLDTLTEKHAEQE--------N   75 (103)
T ss_dssp             CCCCHHHHHHHHTCCCEEEEE--CGGGCCCCTTSEEEEEETTTEEEEEEEEEEEEEEECSTTTSTHHHHHT--------T
T ss_pred             eehhHhhhHHHhcCCceEEec--cchhcccCCCCEEEEEEccCCCEEEEEEEEEEeeecHHHhhHHHHhhc--------C
Confidence            445677778999999999999  66667899999997 44   1  2334444443  34433222 1221        1


Q ss_pred             CCHHHHHHHHHhcCChHHHhhcCCeEEEEEee
Q 022692          204 KTIEEVLQVYKFIENSTQRRRKGPMVSLQYAF  235 (293)
Q Consensus       204 ~SiEEgv~~yr~iYSkEkE~qyGV~VAIeI~l  235 (293)
                      -++++.-++++.||+.+.+-     ..|++++
T Consensus        76 M~L~eLK~vI~eIYP~~~~l-----yvI~f~l  102 (103)
T d1te7a_          76 MTLTELKKVIADIYPGQTQF-----YVIEFKC  102 (103)
T ss_dssp             SCHHHHHHHHHHHCSCCSCE-----EEEEEEC
T ss_pred             CCHHHHHHHHHHHCCCCceE-----EEEEEEe
Confidence            26888889999999976543     4566654

>d2dp9a1 b.122.1.5 (A:1-120) Hypothetical protein TTHA0113 {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: Hypothetical protein TTHA0113
domain: Hypothetical protein TTHA0113
species: Thermus thermophilus [TaxId: 274]

Probab=80.89  E-value=0.46  Score=36.61  Aligned_cols=58  Identities=26%  Similarity=0.237  Sum_probs=39.8

Q ss_pred             eeeeccccchHHHhcCCceEEEeecCccccCCCCCCEEEEc-ee--EEEEEEEEeecCCHHHHHh
Q 022692          131 FELHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILLN-KC--MMLKVQSVCHYDSFSEMLE  192 (293)
Q Consensus       131 heM~L~e~yF~lIksGkKTIE~RLnDeKRq~IkvGD~I~F~-k~--L~v~V~~Vr~Y~SF~eLLe  192 (293)
                      .-+-+.++|-.+|..|.||||+|--..+++    |...+=. .+  -.++..++..|-+-.+...
T Consensus         6 ~~Lsi~QPwA~lI~~G~K~iE~R~w~t~~R----G~l~Iha~~k~~~~~~l~d~~~~~~~~~~~~   66 (120)
T d2dp9a1           6 LGLIVREPYASLIVDGRKVWEIRRRKTRHR----GPLGIVSGGRLIGQADLVGVEGPFSVEELLA   66 (120)
T ss_dssp             CEEECCTTHHHHHHTTCCCEEEESSCCCCC----EEEEEEETTEEEEEEEEEEEEEEECHHHHGG
T ss_pred             ceeEEeCcHHHHHHcCCCeeeeccCCCCCC----ccEEEEEcccCCCchhHHHHhcccchhhhhh
Confidence            346789999999999999999999876664    5433332 22  2346666666666555544