Citrus Sinensis ID: 022716

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290---
Protein Sequence
MGESSIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFENA
Secondary Structure (PSIPRED)
cccccEEEEcccccEEEcccccEEEEEEcccccEEEEccccccEEEEEccccccccEEccccccccccEEEEEEccccccEEEEccccccEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEcccccEEEEEcccccEEEEccccccEEEEEEcccccEEEcccccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEcccccccEEEEEEcccccEEEEEcccccEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEEccccEEEEEccEEEEEccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEccccEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEEccccccccEEEEEEccccccEEEEEccccEEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEccccccEEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEcccccc
Coil and Loop (DISEMBL)
mgessipfknlhsreytghkkkvhsvawnctgtklasgsvdqtarvwhiephghgkvkdielrghadsvdqlcwdpkhaDLIATASgdktvrlwdarsgkcsqqaelsgeninitykpdgthiavgnrddeltildvrkfkpihrrkfgyeVNEIAWNMTGEMFFLTtgnagcyciaidpmgryfavgsADSLVSLWDISEMLCVRtftklewpvrtisfshtgdyiasasedlfidisnvhtgrtvhqipcraamnsvewnpkynllayagddknkyqadegvfriygfena
Flexible Loop (DISEMBL)
mgessipfknlhsreytghkKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKcsqqaelsgeninitykpdgthiavgnrddeltildvrkfkpihrrkfgyeVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAamnsvewnPKYNLLAYAGDDKNKYQADEGVFRIYGFENA
Low Complexity Region (SEG)
MGESSIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFENA
Disordered region (IsUnstruct)
*******************KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKC*****LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGF***
Disordered Region (DISOPRED)
MGESSIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVF*IYG****
Disordered Region (DISEMBL)
MGESSIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFENA
Disordered Region (DISPRO)
*GESSIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIY*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGESSIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFENA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	293	2.2.26 [Sep-21-2011]
Q8VE80	351	THO complex subunit 3 OS=	yes	no	0.948	0.792	0.493	1e-81
Q96J01	351	THO complex subunit 3 OS=	yes	no	0.948	0.792	0.493	1e-81
Q29RH4	351	THO complex subunit 3 OS=	yes	no	0.948	0.792	0.493	1e-81
P14197	478	WD repeat-containing prot	yes	no	0.955	0.585	0.348	8e-56
Q9USL1	309	Uncharacterized WD repeat	yes	no	0.931	0.883	0.338	8e-48
Q8YRI1	1526	Uncharacterized WD repeat	no	no	0.788	0.151	0.303	4e-21
Q00808	1356	Vegetative incompatibilit	no	no	0.819	0.176	0.277	7e-20
Q7SZM9	519	F-box-like/WD repeat-cont	N/A	no	0.843	0.475	0.290	9e-20
Q8BHJ5	514	F-box-like/WD repeat-cont	no	no	0.843	0.480	0.290	9e-20
Q9BZK7	514	F-box-like/WD repeat-cont	no	no	0.843	0.480	0.290	1e-19

>sp|Q8VE80|THOC3_MOUSE THO complex subunit 3 OS=Mus musculus GN=Thoc3 PE=2 SV=1

 Score =  303 bits (775), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 150/304 (49%), Positives = 196/304 (64%), Gaps = 26/304 (8%)

Query: 13  SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQL 72
           +RE+  H  KVHSVAW+C G +LASGS D+TA V+ +E      VK+   RGH DSVDQL
Sbjct: 48  TREFPAHSAKVHSVAWSCDGRRLASGSFDKTASVFLLE--KDRLVKENNYRGHGDSVDQL 105

Query: 73  CWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDEL 132
           CW P + DL  TASGDKT+R+WD R+ KC       GENINI + PDG  IAVGN+DD +
Sbjct: 106 CWHPSNPDLFVTASGDKTIRIWDVRTTKCIATVNTKGENINICWSPDGQTIAVGNKDDVV 165

Query: 133 TILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGN---------------------A 171
           T +D +  +     +F +EVNEI+WN    MFFLT GN                     +
Sbjct: 166 TFIDAKTHRSKAEEQFKFEVNEISWNNDNNMFFLTNGNGCINILSYPELKPVQSINAHPS 225

Query: 172 GCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASAS 231
            C CI  DPMG+YFA GSAD+LVSLWD+ E++CVR F++L+WPVRT+SFSH G  +ASAS
Sbjct: 226 NCICIKFDPMGKYFATGSADALVSLWDVDELVCVRCFSRLDWPVRTLSFSHDGKMLASAS 285

Query: 232 EDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKN-KYQA--DEGVFRIY 288
           ED FIDI+ V TG  + ++ C +   +V W+PK  LLA+A DDK+ KY +  + G  +++
Sbjct: 286 EDHFIDIAEVETGDKLWEVQCESPTFTVAWHPKRPLLAFACDDKDGKYDSSREAGTVKLF 345

Query: 289 GFEN 292
           G  N
Sbjct: 346 GLPN 349

Component of the THO subcomplex of the TREX complex. The TREX complex specifically associates with spliced mRNA and not with unspliced pre-mRNA. It is recruited to spliced mRNAs by a transcription-independent mechanism. Binds to mRNA upstream of the exon-junction complex (EJC) and is recruited in a splicing- and cap-dependent manner to a region near the 5' end of the mRNA where it functions in mRNA export. The recruitment occurs via an interaction between ALYREF/THOC4 and the cap-binding protein NCBP1. DDX39B functions as a bridge between ALYREF/THOC4 and the THO complex.
Mus musculus (taxid: 10090)

>sp|Q96J01|THOC3_HUMAN THO complex subunit 3 OS=Homo sapiens GN=THOC3 PE=1 SV=1

 Score =  303 bits (775), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 150/304 (49%), Positives = 196/304 (64%), Gaps = 26/304 (8%)

Query: 13  SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQL 72
           +RE+  H  KVHSVAW+C G +LASGS D+TA V+ +E      VK+   RGH DSVDQL
Sbjct: 48  TREFLAHSAKVHSVAWSCDGRRLASGSFDKTASVFLLE--KDRLVKENNYRGHGDSVDQL 105

Query: 73  CWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDEL 132
           CW P + DL  TASGDKT+R+WD R+ KC       GENINI + PDG  IAVGN+DD +
Sbjct: 106 CWHPSNPDLFVTASGDKTIRIWDVRTTKCIATVNTKGENINICWSPDGQTIAVGNKDDVV 165

Query: 133 TILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGN---------------------A 171
           T +D +  +     +F +EVNEI+WN    MFFLT GN                     +
Sbjct: 166 TFIDAKTHRSKAEEQFKFEVNEISWNNDNNMFFLTNGNGCINILSYPELKPVQSINAHPS 225

Query: 172 GCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASAS 231
            C CI  DPMG+YFA GSAD+LVSLWD+ E++CVR F++L+WPVRT+SFSH G  +ASAS
Sbjct: 226 NCICIKFDPMGKYFATGSADALVSLWDVDELVCVRCFSRLDWPVRTLSFSHDGKMLASAS 285

Query: 232 EDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKN-KYQA--DEGVFRIY 288
           ED FIDI+ V TG  + ++ C +   +V W+PK  LLA+A DDK+ KY +  + G  +++
Sbjct: 286 EDHFIDIAEVETGDKLWEVQCESPTFTVAWHPKRPLLAFACDDKDGKYDSSREAGTVKLF 345

Query: 289 GFEN 292
           G  N
Sbjct: 346 GLPN 349

Component of the THO subcomplex of the TREX complex. The TREX complex specifically associates with spliced mRNA and not with unspliced pre-mRNA. It is recruited to spliced mRNAs by a transcription-independent mechanism. Binds to mRNA upstream of the exon-junction complex (EJC) and is recruited in a splicing- and cap-dependent manner to a region near the 5' end of the mRNA where it functions in mRNA export. The recruitment occurs via an interaction between ALYREF/THOC4 and the cap-binding protein NCBP1. DDX39B functions as a bridge between ALYREF/THOC4 and the THO complex.The TREX complex is essential for the export of Kaposi's sarcoma-associated herpesvirus (KSHV) intronless mRNAs and infectious virus production. The recruitment of the TREX complex to the intronless viral mRNA occurs via an interaction between KSHV ORF57 protein and ALYREF/THOC4.

Homo sapiens (taxid: 9606)

>sp|Q29RH4|THOC3_BOVIN THO complex subunit 3 OS=Bos taurus GN=THOC3 PE=2 SV=1

 Score =  303 bits (775), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 150/304 (49%), Positives = 196/304 (64%), Gaps = 26/304 (8%)

Query: 13  SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQL 72
           +RE+  H  KVHSVAW+C G +LASGS D+TA V+ +E      VK+   RGH DSVDQL
Sbjct: 48  TREFPAHSAKVHSVAWSCDGRRLASGSFDKTASVFLLE--KDRLVKENNYRGHGDSVDQL 105

Query: 73  CWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDEL 132
           CW P + DL  TASGDKT+R+WD R+ KC       GENINI + PDG  IAVGN+DD +
Sbjct: 106 CWHPSNPDLFVTASGDKTIRIWDVRTTKCIATVNTKGENINICWSPDGQTIAVGNKDDVV 165

Query: 133 TILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGN---------------------A 171
           T +D +  +     +F +EVNEI+WN    MFFLT GN                     +
Sbjct: 166 TFIDAKTHRSKAEEQFKFEVNEISWNNDNNMFFLTNGNGCINILSYPELKPVQSINAHPS 225

Query: 172 GCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASAS 231
            C CI  DPMG+YFA GSAD+LVSLWD+ E++CVR F++L+WPVRT+SFSH G  +ASAS
Sbjct: 226 NCICIKFDPMGKYFATGSADALVSLWDVDELVCVRCFSRLDWPVRTLSFSHDGKMLASAS 285

Query: 232 EDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKN-KYQA--DEGVFRIY 288
           ED FIDI+ V TG  + ++ C +   +V W+PK  LLA+A DDK+ KY +  + G  +++
Sbjct: 286 EDHFIDIAEVETGDKLWEVQCESPTFTVAWHPKRPLLAFACDDKDGKYDSSREAGTVKLF 345

Query: 289 GFEN 292
           G  N
Sbjct: 346 GLPN 349

Component of the THO subcomplex of the TREX complex. The TREX complex specifically associates with spliced mRNA and not with unspliced pre-mRNA. It is recruited to spliced mRNAs by a transcription-independent mechanism. Binds to mRNA upstream of the exon-junction complex (EJC) and is recruited in a splicing- and cap-dependent manner to a region near the 5' end of the mRNA where it functions in mRNA export. The recruitment occurs via an interaction between ALYREF/THOC4 and the cap-binding protein NCBP1. DDX39B functions as a bridge between ALYREF/THOC4 and the THO complex.

Bos taurus (taxid: 9913)

>sp|P14197|AAC3_DICDI WD repeat-containing protein AAC3 OS=Dictyostelium discoideum GN=AAC3 PE=2 SV=2

 Score =  217 bits (553), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 114/327 (34%), Positives = 182/327 (55%), Gaps = 47/327 (14%)

Query: 8   FKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKV---------- 57
           F    ++++ G+KKK  SVAWN  GTK+AS   D   RVW+ +P G+             
Sbjct: 153 FSECSTKDFIGNKKKSTSVAWNANGTKIASSGSDGIVRVWNFDPLGNSNNNNNSNNTSSN 212

Query: 58  -------KDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGE 110
                  + IEL+GH  S++++ W PK+ DL+A+A  DK +++WD + GKC      + E
Sbjct: 213 SKNNNIKETIELKGHDGSIEKISWSPKNNDLLASAGTDKVIKIWDVKIGKCIGTVSTNSE 272

Query: 111 NINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF-GYEVNEIAWNMTGEMFFL--T 167
           NI++ + PDG  I    RDD L ++D+   K +   KF G E+N++ W+  G++  +  +
Sbjct: 273 NIDVRWSPDGQFIVACTRDDHLALIDLPTIKTLKIYKFNGEELNQVGWDNNGDLILMANS 332

Query: 168 TGN------------------------AGCYCIAIDPMGRYFAVGSADSLVSLWDISEML 203
            GN                        A  YC+  DP G+Y A GSADS+VSLWDI +M+
Sbjct: 333 MGNIEAYKFLPKSTTHVKHLKTLYGHTASIYCMEFDPTGKYLAAGSADSIVSLWDIEDMM 392

Query: 204 CVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNP 263
           CV+TF K  +P R++SFS  G +IA++S +  I+I ++ + + +H I C + ++S+ W+P
Sbjct: 393 CVKTFIKSTFPCRSVSFSFDGQFIAASSFESTIEIFHIESSQPIHTIEC-SGVSSLMWHP 451

Query: 264 KYNLLAYAGDDKNKYQADEGVFRIYGF 290
              LLAYA  + N+   D  + R++G+
Sbjct: 452 TLPLLAYA-PEINENNKDPSI-RVFGY 476

Dictyostelium discoideum (taxid: 44689)

>sp|Q9USL1|YJKA_SCHPO Uncharacterized WD repeat-containing protein C18B5.10c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC18B5.10c PE=4 SV=1

 Score =  191 bits (484), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 100/295 (33%), Positives = 162/295 (54%), Gaps = 22/295 (7%)

Query: 3   ESSIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIEL 62
           ES   F  L +R+  G +  + S+ WN +G++LAS S   +  VW+ +        ++  
Sbjct: 7   ESLPKFPELKTRDLQGQQGPIRSLGWNLSGSRLASSSSSGSVLVWNSDRLDFKFTTELGN 66

Query: 63  RGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTH 122
           RG+   V+QL WDP H+D +      K +R WD RS K   + E + ENI  T+ P G +
Sbjct: 67  RGYG-LVEQLVWDPTHSDRLMAVYAGKMIRFWDFRSAKPIAEIESNYENIYATWSPSGNY 125

Query: 123 IAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG------------- 169
               +RDD L+ +D R+ + +   +   E NE  W+ + ++FF+TTG             
Sbjct: 126 CCASSRDDMLSFIDARERRIMETFQQPCETNECCWSFSEDLFFMTTGLGTVQIMEWPSLK 185

Query: 170 --------NAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFS 221
                   N+ C+CI   P  R+ A+G AD++ SLWD  E++C R+ T++++P+RT+SFS
Sbjct: 186 RVYDIKAHNSNCFCIEFSPDNRHLAIGGADAITSLWDPQELICERSITRMDYPIRTLSFS 245

Query: 222 HTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKN 276
           +   Y+AS SED ++DI++  TG  + +IP    +N V W+P  ++LAYA  + N
Sbjct: 246 YDSRYLASGSEDRYVDIADTKTGDQIWKIPTNGPLNKVAWHPTKHILAYAVSEPN 300

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1

 Score =  102 bits (254), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 80/264 (30%), Positives = 129/264 (48%), Gaps = 33/264 (12%)

Query: 18   GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK 77
            GH   V++VA++  G  LASGS DQT R+W I       +    L+GH   V+ + ++P 
Sbjct: 1156 GHTNWVNAVAFSPDGATLASGSGDQTVRLWDISSSKCLYI----LQGHTSWVNSVVFNPD 1211

Query: 78   HADLIATASGDKTVRLWDARSGKC--SQQAELSGENINITYKPDGTHIAVGNRDDELTIL 135
             + L A+ S D+TVRLW+  S KC  + Q   S  N ++ + PDG+ +A G+ D  + + 
Sbjct: 1212 GSTL-ASGSSDQTVRLWEINSSKCLCTFQGHTSWVN-SVVFNPDGSMLASGSSDKTVRLW 1269

Query: 136  DVRKFKPIHRRKFGYE--VNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSL 193
            D+   K +H  + G+   VN +A+N                     P G   A GS D  
Sbjct: 1270 DISSSKCLHTFQ-GHTNWVNSVAFN---------------------PDGSMLASGSGDQT 1307

Query: 194  VSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCR 253
            V LW+IS   C+ TF      V +++FS  G  +AS S+D  + + ++ +G  ++     
Sbjct: 1308 VRLWEISSSKCLHTFQGHTSWVSSVTFSPDGTMLASGSDDQTVRLWSISSGECLYTFLGH 1367

Query: 254  AA-MNSVEWNPKYNLLAYAGDDKN 276
               + SV ++P   +LA    D+ 
Sbjct: 1368 TNWVGSVIFSPDGAILASGSGDQT 1391

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1

 Score = 97.8 bits (242), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 74/267 (27%), Positives = 118/267 (44%), Gaps = 27/267 (10%)

Query: 10   NLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSV 69
            N  ++   GH   V SVA++  G ++ASGS D+T ++W     G G      L GH  SV
Sbjct: 831  NACTQTLEGHGSSVLSVAFSADGQRVASGSDDKTIKIWDT-ASGTGTQT---LEGHGGSV 886

Query: 70   DQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENI-NITYKPDGTHIAVGNR 128
              + + P   + +A+ S DKT+++WDA SG C+Q  E  G  + ++ + PDG  +A G+ 
Sbjct: 887  WSVAFSPDR-ERVASGSDDKTIKIWDAASGTCTQTLEGHGGRVQSVAFSPDGQRVASGSD 945

Query: 129  DDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVG 188
            D  + I D                             L    +    +A  P G+  A G
Sbjct: 946  DHTIKIWDAASGTCTQT--------------------LEGHGSSVLSVAFSPDGQRVASG 985

Query: 189  SADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVH 248
            S D  + +WD +   C +T       V +++FS  G  +AS S+D  I I +  +G    
Sbjct: 986  SGDKTIKIWDTASGTCTQTLEGHGGSVWSVAFSPDGQRVASGSDDKTIKIWDTASGTCTQ 1045

Query: 249  QIPCRAA-MNSVEWNPKYNLLAYAGDD 274
             +      + SV ++P    +A   DD
Sbjct: 1046 TLEGHGGWVQSVVFSPDGQRVASGSDD 1072

Responsible for vegetative incompatibility through specific interactions with different alleles of the unlinked gene, het-c.

Podospora anserina (taxid: 5145)

>sp|Q7SZM9|TB1RA_XENLA F-box-like/WD repeat-containing protein TBL1XR1-A OS=Xenopus laevis GN=tbl1xr1-a PE=1 SV=1

 Score = 97.8 bits (242), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 83/286 (29%), Positives = 123/286 (43%), Gaps = 39/286 (13%)

Query: 21  KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHAD 80
           K V S+ WN  GT LA+GS D  AR+W  +    G +    L  H   +  L W+ K  +
Sbjct: 231 KDVTSLDWNSEGTLLATGSYDGFARIWTKD----GNLAST-LGQHKGPIFALKWN-KKGN 284

Query: 81  LIATASGDKTVRLWDARSGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRK 139
            I +A  DKT  +WDA +G+  QQ    S   +++ ++ + T  A  + D  + +  + +
Sbjct: 285 FILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQSNNT-FASCSTDMCIHVCKLGQ 343

Query: 140 FKPIHR-RKFGYEVNEIAWNMTGEMFF---------------------LTTGNAGCYCIA 177
            +PI   +    EVN I W+ TG +                       L   N   Y I 
Sbjct: 344 DRPIKTFQGHTNEVNAIKWDPTGNLLASCSDDMTLKIWSMKHDTCVHDLQAHNKEIYTIK 403

Query: 178 IDPMGR---------YFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIA 228
             P G            A  S DS V LWD+   +C+ T TK + PV +++FS  G Y+A
Sbjct: 404 WSPTGPGTNNPNANLMLASASFDSTVRLWDVDRGICIHTLTKHQEPVYSVAFSPDGRYLA 463

Query: 229 SASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDD 274
           S S D  + I N  TG  VH       +  V WN   + +  +  D
Sbjct: 464 SGSFDKCVHIWNTQTGALVHSYRGTGGIFEVCWNAAGDKVGASASD 509

F-box-like protein which acts as an integral component of the N-CoR transcriptional corepressor complex. Probably regulates transcription activation mediated by nuclear receptors. May mediate the recruitment of the 19S proteasome complex, leading to the subsequent proteasomal degradation of the N-CoR complex, thereby allowing cofactor exchange and transcription activation.

Xenopus laevis (taxid: 8355)

>sp|Q8BHJ5|TBL1R_MOUSE F-box-like/WD repeat-containing protein TBL1XR1 OS=Mus musculus GN=Tbl1xr1 PE=2 SV=1

 Score = 97.4 bits (241), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 83/286 (29%), Positives = 123/286 (43%), Gaps = 39/286 (13%)

Query: 21  KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHAD 80
           K V S+ WN  GT LA+GS D  AR+W  +    G +    L  H   +  L W+ K  +
Sbjct: 226 KDVTSLDWNSEGTLLATGSYDGFARIWTKD----GNLAST-LGQHKGPIFALKWN-KKGN 279

Query: 81  LIATASGDKTVRLWDARSGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRK 139
            I +A  DKT  +WDA +G+  QQ    S   +++ ++ + T  A  + D  + +  + +
Sbjct: 280 FILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQSNNT-FASCSTDMCIHVCKLGQ 338

Query: 140 FKPIHR-RKFGYEVNEIAWNMTGEMFF---------------------LTTGNAGCYCIA 177
            +PI   +    EVN I W+ TG +                       L   N   Y I 
Sbjct: 339 DRPIKTFQGHTNEVNAIKWDPTGNLLASCSDDMTLKIWSMKQDNCVHDLQAHNKEIYTIK 398

Query: 178 IDPMGR---------YFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIA 228
             P G            A  S DS V LWD+   +C+ T TK + PV +++FS  G Y+A
Sbjct: 399 WSPTGPGTNNPNANLMLASASFDSTVRLWDVDRGICIHTLTKHQEPVYSVAFSPDGRYLA 458

Query: 229 SASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDD 274
           S S D  + I N  TG  VH       +  V WN   + +  +  D
Sbjct: 459 SGSFDKCVHIWNTQTGALVHSYRGTGGIFEVCWNAAGDKVGASASD 504

F-box-like protein involved in the recruitment of the ubiquitin/19S proteasome complex to nuclear receptor-regulated transcription units. Plays an essential role in transcription activation mediated by nuclear receptors. Probably acts as integral component of the N-Cor corepressor complex that mediates the recruitment of the 19S proteasome complex, leading to the subsequent proteasomal degradation of N-Cor complex, thereby allowing cofactor exchange, and transcription activation.

Mus musculus (taxid: 10090)

>sp|Q9BZK7|TBL1R_HUMAN F-box-like/WD repeat-containing protein TBL1XR1 OS=Homo sapiens GN=TBL1XR1 PE=1 SV=1

 Score = 97.4 bits (241), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 83/286 (29%), Positives = 123/286 (43%), Gaps = 39/286 (13%)

Query: 21  KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHAD 80
           K V S+ WN  GT LA+GS D  AR+W  +    G +    L  H   +  L W+ K  +
Sbjct: 226 KDVTSLDWNSEGTLLATGSYDGFARIWTKD----GNLAST-LGQHKGPIFALKWN-KKGN 279

Query: 81  LIATASGDKTVRLWDARSGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRK 139
            I +A  DKT  +WDA +G+  QQ    S   +++ ++ + T  A  + D  + +  + +
Sbjct: 280 FILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQSNNT-FASCSTDMCIHVCKLGQ 338

Query: 140 FKPIHR-RKFGYEVNEIAWNMTGEMFF---------------------LTTGNAGCYCIA 177
            +PI   +    EVN I W+ TG +                       L   N   Y I 
Sbjct: 339 DRPIKTFQGHTNEVNAIKWDPTGNLLASCSDDMTLKIWSMKQDNCVHDLQAHNKEIYTIK 398

Query: 178 IDPMGR---------YFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIA 228
             P G            A  S DS V LWD+   +C+ T TK + PV +++FS  G Y+A
Sbjct: 399 WSPTGPGTNNPNANLMLASASFDSTVRLWDVDRGICIHTLTKHQEPVYSVAFSPDGRYLA 458

Query: 229 SASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDD 274
           S S D  + I N  TG  VH       +  V WN   + +  +  D
Sbjct: 459 SGSFDKCVHIWNTQTGALVHSYRGTGGIFEVCWNAAGDKVGASASD 504

F-box-like protein involved in the recruitment of the ubiquitin/19S proteasome complex to nuclear receptor-regulated transcription units. Plays an essential role in transcription activation mediated by nuclear receptors. Probably acts as integral component of the N-Cor corepressor complex that mediates the recruitment of the 19S proteasome complex, leading to the subsequent proteasomal degradation of N-Cor complex, thereby allowing cofactor exchange, and transcription activation.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	293
225462041	313	PREDICTED: THO complex subunit 3 [Vitis	0.993	0.929	0.881	1e-161
356566273	313	PREDICTED: THO complex subunit 3-like [G	0.993	0.929	0.875	1e-161
356527204	313	PREDICTED: THO complex subunit 3-like [G	0.993	0.929	0.871	1e-160
224061651	313	predicted protein [Populus trichocarpa]	0.993	0.929	0.871	1e-160
449463705	314	PREDICTED: THO complex subunit 3-like [C	0.996	0.929	0.856	1e-158
449526353	314	PREDICTED: THO complex subunit 3-like [C	0.996	0.929	0.853	1e-157
357460359	313	THO complex subunit [Medicago truncatula	0.993	0.929	0.855	1e-157
297796487	315	transducin family protein [Arabidopsis l	1.0	0.930	0.806	1e-151
15241134	315	THO complex subunit 3 [Arabidopsis thali	1.0	0.930	0.803	1e-150
294464220	327	unknown [Picea sitchensis]	0.986	0.883	0.806	1e-149

>gi|225462041|ref|XP_002274754.1| PREDICTED: THO complex subunit 3 [Vitis vinifera] gi|147789347|emb|CAN62349.1| hypothetical protein VITISV_004943 [Vitis vinifera] gi|296089987|emb|CBI39806.3| unnamed protein product [Vitis vinifera]

 Score =  573 bits (1477), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 275/312 (88%), Positives = 285/312 (91%), Gaps = 21/312 (6%)

Query: 3   ESSIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIEL 62
           E +IPFKNLHSREY GHKKKVHSVAWNCTGTKLASGSVDQTAR+W IE HGHGKVKDIEL
Sbjct: 2   EETIPFKNLHSREYQGHKKKVHSVAWNCTGTKLASGSVDQTARIWLIEQHGHGKVKDIEL 61

Query: 63  RGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTH 122
           +GH DSVDQLCWDPKHADLIATASGDKTVRLWDARSGKC+QQAELSGENINITYKPDGTH
Sbjct: 62  KGHTDSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCTQQAELSGENINITYKPDGTH 121

Query: 123 IAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGN------------ 170
           IAVGNRDDELTILDVRKFKPIHRRKF YEVNEIAWNMTGEMFFLTTGN            
Sbjct: 122 IAVGNRDDELTILDVRKFKPIHRRKFSYEVNEIAWNMTGEMFFLTTGNGTVEVLAYPALR 181

Query: 171 ---------AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFS 221
                    AGCYCIAIDP+GRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISF+
Sbjct: 182 PLDTLMAHTAGCYCIAIDPIGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFN 241

Query: 222 HTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQAD 281
           HTG+YIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPK+NLLAYAGDDKNKYQAD
Sbjct: 242 HTGEYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKYQAD 301

Query: 282 EGVFRIYGFENA 293
           EGVFRI+GFE+A
Sbjct: 302 EGVFRIFGFESA 313

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356566273|ref|XP_003551358.1| PREDICTED: THO complex subunit 3-like [Glycine max]

 Score =  573 bits (1476), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 273/312 (87%), Positives = 285/312 (91%), Gaps = 21/312 (6%)

Query: 3   ESSIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIEL 62
           E  IPFKNLH+REY+GHKKKVHSVAWNC GTKLASGSVDQTAR+WHIEPHGHGKVKDIEL
Sbjct: 2   EEQIPFKNLHNREYSGHKKKVHSVAWNCIGTKLASGSVDQTARIWHIEPHGHGKVKDIEL 61

Query: 63  RGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTH 122
           +GH DSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTH
Sbjct: 62  KGHTDSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTH 121

Query: 123 IAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGN------------ 170
           +AVGNRDDELTILDVRKFKPIHRRKF YEVNEIAWNMTGEMFFLTTGN            
Sbjct: 122 VAVGNRDDELTILDVRKFKPIHRRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLSYPSLR 181

Query: 171 ---------AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFS 221
                    AGCYCIAIDP+GRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTI F+
Sbjct: 182 PLDTLMAHTAGCYCIAIDPVGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTIGFN 241

Query: 222 HTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQAD 281
           +TGD+IASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNK+QAD
Sbjct: 242 YTGDFIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKHQAD 301

Query: 282 EGVFRIYGFENA 293
           EGVFRI+GF+NA
Sbjct: 302 EGVFRIFGFKNA 313

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527204|ref|XP_003532202.1| PREDICTED: THO complex subunit 3-like [Glycine max]

 Score =  571 bits (1472), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 272/312 (87%), Positives = 285/312 (91%), Gaps = 21/312 (6%)

Query: 3   ESSIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIEL 62
           E  IPFKNLHSREY+GHKKKVHSVAWNC GTKLASGSVDQTAR+WHIEPHGHGKVKDIEL
Sbjct: 2   EEQIPFKNLHSREYSGHKKKVHSVAWNCIGTKLASGSVDQTARIWHIEPHGHGKVKDIEL 61

Query: 63  RGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTH 122
           +GH DSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTH
Sbjct: 62  KGHTDSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTH 121

Query: 123 IAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGN------------ 170
           +AVGNRDDELTILDVRKFKPIHRRKF YEVNEI+WNMTGEMFFLTTGN            
Sbjct: 122 VAVGNRDDELTILDVRKFKPIHRRKFNYEVNEISWNMTGEMFFLTTGNGTVEVLSYPSLR 181

Query: 171 ---------AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFS 221
                    AGCYCIAIDP+GRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTI F+
Sbjct: 182 PLDTLMAHTAGCYCIAIDPVGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTIGFN 241

Query: 222 HTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQAD 281
           ++GD+IASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNK+QAD
Sbjct: 242 YSGDFIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKHQAD 301

Query: 282 EGVFRIYGFENA 293
           EGVFRI+GF+NA
Sbjct: 302 EGVFRIFGFKNA 313

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224061651|ref|XP_002300586.1| predicted protein [Populus trichocarpa] gi|118482489|gb|ABK93167.1| unknown [Populus trichocarpa] gi|222847844|gb|EEE85391.1| predicted protein [Populus trichocarpa]

 Score =  571 bits (1471), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 272/312 (87%), Positives = 283/312 (90%), Gaps = 21/312 (6%)

Query: 3   ESSIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIEL 62
           E +IPFKNLHSREY GHKKKVHSVAWNCTGTKLASGSVDQTARVWHI+ HGHGK+KDIEL
Sbjct: 2   EETIPFKNLHSREYQGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIDLHGHGKIKDIEL 61

Query: 63  RGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTH 122
           +GHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQ ELSGENINITY+PDGTH
Sbjct: 62  KGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQTELSGENINITYRPDGTH 121

Query: 123 IAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGN------------ 170
           +AVGNRDDELTILDVRKFKPIHRRKF YEVNEIAWNMTGEMF LTTGN            
Sbjct: 122 VAVGNRDDELTILDVRKFKPIHRRKFNYEVNEIAWNMTGEMFLLTTGNGTVEVLSYPSLQ 181

Query: 171 ---------AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFS 221
                    AGCYCIAIDP GRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISF+
Sbjct: 182 PLETVMAHTAGCYCIAIDPKGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFN 241

Query: 222 HTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQAD 281
           HTGD+IASASEDLFIDISNVHTGR+VHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQ D
Sbjct: 242 HTGDFIASASEDLFIDISNVHTGRSVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQTD 301

Query: 282 EGVFRIYGFENA 293
           EGVFRI+GFE+A
Sbjct: 302 EGVFRIFGFESA 313

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449463705|ref|XP_004149572.1| PREDICTED: THO complex subunit 3-like [Cucumis sativus]

 Score =  563 bits (1451), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 268/313 (85%), Positives = 283/313 (90%), Gaps = 21/313 (6%)

Query: 1   MGESSIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDI 60
           M ES+  FKNLHSREY GHKKKVHSVAWNCTG KLASGSVDQTARVWHIEPHGHGKVKD+
Sbjct: 1   MEESAQAFKNLHSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDV 60

Query: 61  ELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDG 120
           EL+GH DSVDQLCWDPKH+DLIATASGDKTVRLWDAR+GKCSQQAELSGENINITYKPDG
Sbjct: 61  ELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARNGKCSQQAELSGENINITYKPDG 120

Query: 121 THIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGN---------- 170
           THIAVGNRDDELTILDVRKFKP+H+RKF YEVNEIAWNMTGEMFFLTTGN          
Sbjct: 121 THIAVGNRDDELTILDVRKFKPVHKRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLAYPS 180

Query: 171 -----------AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTIS 219
                      AGCYCIAIDP+G YFAVGSADSLVSLWDIS+MLCVRTFTKLEWPVRTIS
Sbjct: 181 LRPIETLMAHTAGCYCIAIDPVGGYFAVGSADSLVSLWDISQMLCVRTFTKLEWPVRTIS 240

Query: 220 FSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQ 279
           F+HTG+YIASASEDLFIDISNV TGRTVHQIPCRAAMNSVEWNPK+NLLAYAGDDKNKYQ
Sbjct: 241 FNHTGEYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKYQ 300

Query: 280 ADEGVFRIYGFEN 292
           ADEG+FRI+GFE+
Sbjct: 301 ADEGIFRIFGFES 313

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449526353|ref|XP_004170178.1| PREDICTED: THO complex subunit 3-like [Cucumis sativus]

 Score =  561 bits (1445), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 267/313 (85%), Positives = 282/313 (90%), Gaps = 21/313 (6%)

Query: 1   MGESSIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDI 60
           M ES+  FKNLHSREY GHKKKVHSVAWNCTG KLASGSVDQTARVWHIEPHGHGKVKD+
Sbjct: 1   MEESAQAFKNLHSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDV 60

Query: 61  ELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDG 120
           EL+GH DSVDQLCWDPKH+DLIATASGDKTVRLWDAR+GKCSQQAELSGENINITYKPDG
Sbjct: 61  ELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARNGKCSQQAELSGENINITYKPDG 120

Query: 121 THIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGN---------- 170
           THIAVGNRDDELTILDVRKFKP+H+RKF YEVNEIAWNMTGEMFFLTTGN          
Sbjct: 121 THIAVGNRDDELTILDVRKFKPVHKRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLAYPS 180

Query: 171 -----------AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTIS 219
                      AGCYCIAIDP+G YFAVGSADSLVSLWDIS+MLCVRTFTKL WPVRTIS
Sbjct: 181 LRPIETLMAHTAGCYCIAIDPVGGYFAVGSADSLVSLWDISQMLCVRTFTKLRWPVRTIS 240

Query: 220 FSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQ 279
           F+HTG+YIASASEDLFIDISNV TGRTVHQIPCRAAMNSVEWNPK+NLLAYAGDDKNKYQ
Sbjct: 241 FNHTGEYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKYQ 300

Query: 280 ADEGVFRIYGFEN 292
           ADEG+FRI+GFE+
Sbjct: 301 ADEGIFRIFGFES 313

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357460359|ref|XP_003600461.1| THO complex subunit [Medicago truncatula] gi|355489509|gb|AES70712.1| THO complex subunit [Medicago truncatula]

 Score =  559 bits (1440), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 267/312 (85%), Positives = 278/312 (89%), Gaps = 21/312 (6%)

Query: 3   ESSIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIEL 62
           E    FKNLHSREY+GHKKKVHSVAWNC GTKLASGSVDQTAR+WHI+PH HGKVKDIEL
Sbjct: 2   EEQFSFKNLHSREYSGHKKKVHSVAWNCIGTKLASGSVDQTARIWHIDPHAHGKVKDIEL 61

Query: 63  RGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTH 122
           +GH DSVDQLCWDPKH DLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTH
Sbjct: 62  KGHTDSVDQLCWDPKHPDLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTH 121

Query: 123 IAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGN------------ 170
           +AVGNRDDELTILDVRKFKP+HRRKF YEVNEIAWNMTGEMFFLTTGN            
Sbjct: 122 VAVGNRDDELTILDVRKFKPMHRRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLSYPSLR 181

Query: 171 ---------AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFS 221
                    AGCYCIAIDP GR+FAVGSADSLVSLW ISEMLCVRTFTKLEWPVRTISF+
Sbjct: 182 PLDTLMAHTAGCYCIAIDPTGRHFAVGSADSLVSLWVISEMLCVRTFTKLEWPVRTISFN 241

Query: 222 HTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQAD 281
           HTGD IASASEDLFIDISNVHTG+TVH IPCRAAMNSVEWNPKYN+LAYAGDDKNKYQAD
Sbjct: 242 HTGDLIASASEDLFIDISNVHTGKTVHHIPCRAAMNSVEWNPKYNVLAYAGDDKNKYQAD 301

Query: 282 EGVFRIYGFENA 293
           EGVFRI+GFENA
Sbjct: 302 EGVFRIFGFENA 313

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297796487|ref|XP_002866128.1| transducin family protein [Arabidopsis lyrata subsp. lyrata] gi|297311963|gb|EFH42387.1| transducin family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  538 bits (1387), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 254/315 (80%), Positives = 278/315 (88%), Gaps = 22/315 (6%)

Query: 1   MGESSIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDI 60
           M E++IPFK+LHSREY GHKKKVHSVAWN  GTKLASGSVDQTAR+W+IEPHGH K KD+
Sbjct: 1   MEETTIPFKSLHSREYQGHKKKVHSVAWNSNGTKLASGSVDQTARIWNIEPHGHSKAKDL 60

Query: 61  ELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDG 120
           EL+GH DSVDQLCWDPKH+DL+ATASGDK+VRLWDARSGKC+QQAELSGENINITYKPDG
Sbjct: 61  ELKGHTDSVDQLCWDPKHSDLVATASGDKSVRLWDARSGKCTQQAELSGENINITYKPDG 120

Query: 121 THIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG----------- 169
           TH+AVGNRDDELTILDVRKFKP+HRRKF YEVNEIAWNM G+ FFLTTG           
Sbjct: 121 THVAVGNRDDELTILDVRKFKPLHRRKFNYEVNEIAWNMAGDFFFLTTGLGTVEVLSYPS 180

Query: 170 ----------NAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTIS 219
                      AGCYCIAIDP GRYFAVGSADSLVSLWDIS+MLC+RTFTKLEWPVRTIS
Sbjct: 181 LKPLDTLTAHTAGCYCIAIDPKGRYFAVGSADSLVSLWDISDMLCLRTFTKLEWPVRTIS 240

Query: 220 FSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKN-KY 278
           F+++G+YIASASEDLFIDI+NV TGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKN KY
Sbjct: 241 FNYSGEYIASASEDLFIDIANVQTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNPKY 300

Query: 279 QADEGVFRIYGFENA 293
             DEGVFRI+GFE++
Sbjct: 301 NTDEGVFRIFGFESS 315

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15241134|ref|NP_200424.1| THO complex subunit 3 [Arabidopsis thaliana] gi|9758633|dbj|BAB09295.1| unnamed protein product [Arabidopsis thaliana] gi|20260442|gb|AAM13119.1| unknown protein [Arabidopsis thaliana] gi|23197932|gb|AAN15493.1| unknown protein [Arabidopsis thaliana] gi|332009341|gb|AED96724.1| THO complex subunit 3 [Arabidopsis thaliana]

 Score =  536 bits (1381), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 253/315 (80%), Positives = 277/315 (87%), Gaps = 22/315 (6%)

Query: 1   MGESSIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDI 60
           M E++IPFK+LHSREY GHKKKVHSVAWN  GTKLASGSVDQTAR+W+IEPHGH K KD+
Sbjct: 1   MEETTIPFKSLHSREYQGHKKKVHSVAWNSNGTKLASGSVDQTARIWNIEPHGHSKAKDL 60

Query: 61  ELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDG 120
           EL+GH DSVDQLCWDPKH+DL+ATASGDK+VRLWDARSGKC+QQ ELSGENINITYKPDG
Sbjct: 61  ELKGHTDSVDQLCWDPKHSDLVATASGDKSVRLWDARSGKCTQQVELSGENINITYKPDG 120

Query: 121 THIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG----------- 169
           TH+AVGNRDDELTILDVRKFKP+HRRKF YEVNEIAWNM G+ FFLTTG           
Sbjct: 121 THVAVGNRDDELTILDVRKFKPLHRRKFNYEVNEIAWNMPGDFFFLTTGLGTVEVLSYPS 180

Query: 170 ----------NAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTIS 219
                      AGCYCIAIDP GRYFAVGSADSLVSLWDIS+MLC+RTFTKLEWPVRTIS
Sbjct: 181 LKPLDTLTAHTAGCYCIAIDPKGRYFAVGSADSLVSLWDISDMLCLRTFTKLEWPVRTIS 240

Query: 220 FSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKN-KY 278
           F+++G+YIASASEDLFIDI+NV TGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKN KY
Sbjct: 241 FNYSGEYIASASEDLFIDIANVQTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNPKY 300

Query: 279 QADEGVFRIYGFENA 293
             DEGVFRI+GFE++
Sbjct: 301 NTDEGVFRIFGFESS 315

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|294464220|gb|ADE77625.1| unknown [Picea sitchensis]

 Score =  535 bits (1377), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 250/310 (80%), Positives = 274/310 (88%), Gaps = 21/310 (6%)

Query: 3   ESSIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIEL 62
           +S+  FKNLH+REY  HKKKVHSVAWNCTGTKLASGSVDQTARVW+IEPHGH K KD+EL
Sbjct: 16  DSAPNFKNLHTREYAAHKKKVHSVAWNCTGTKLASGSVDQTARVWNIEPHGHSKAKDLEL 75

Query: 63  RGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTH 122
           +GHADSVDQLCWDPKHA+L+ATASGD+TVRLWDARSGKCSQQ ELSGENINIT+KPDGTH
Sbjct: 76  KGHADSVDQLCWDPKHAELLATASGDRTVRLWDARSGKCSQQVELSGENINITFKPDGTH 135

Query: 123 IAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGN------------ 170
           IAVGNRDDELTI+DVRKFKP+H+RKF YEVNEIAWN TGE+FFLTTGN            
Sbjct: 136 IAVGNRDDELTIIDVRKFKPLHKRKFSYEVNEIAWNTTGELFFLTTGNGTVEVLSYPSLQ 195

Query: 171 ---------AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFS 221
                    AGCYCIAIDP+GRYFAVGSAD+LVSLWD+SEMLCVRTFTKLEWPVRTISF+
Sbjct: 196 ALHTLVAHTAGCYCIAIDPIGRYFAVGSADALVSLWDLSEMLCVRTFTKLEWPVRTISFN 255

Query: 222 HTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQAD 281
           H G YIASASEDLFIDI++V TGRT+HQI CRAAMNSVEWNPKYNLLA+AGDDKNKY  D
Sbjct: 256 HDGQYIASASEDLFIDIADVQTGRTIHQISCRAAMNSVEWNPKYNLLAFAGDDKNKYLTD 315

Query: 282 EGVFRIYGFE 291
           EGVFR++GFE
Sbjct: 316 EGVFRVFGFE 325

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	293
TAIR|locus:2161840	315	TEX1 "AT5G56130" [Arabidopsis	0.576	0.536	0.852	1.4e-142
ZFIN|ZDB-GENE-040808-14	322	thoc3 "THO complex 3" [Danio r	0.580	0.527	0.528	1.1e-80
UNIPROTKB|F1NUQ0	381	THOC3 "Uncharacterized protein	0.573	0.440	0.526	1.5e-79
UNIPROTKB|Q29RH4	351	THOC3 "THO complex subunit 3"	0.563	0.470	0.523	1.5e-79
UNIPROTKB|E2RC43	351	THOC3 "Uncharacterized protein	0.563	0.470	0.523	1.5e-79
UNIPROTKB|Q96J01	351	THOC3 "THO complex subunit 3"	0.563	0.470	0.523	1.5e-79
UNIPROTKB|F1S386	351	THOC3 "Uncharacterized protein	0.563	0.470	0.523	1.5e-79
MGI|MGI:1920916	351	Thoc3 "THO complex 3" [Mus mus	0.563	0.470	0.523	1.5e-79
RGD|1311669	351	Thoc3 "THO complex 3" [Rattus	0.563	0.470	0.523	1.5e-79
FB|FBgn0037569	320	tex "tex" [Drosophila melanoga	0.566	0.518	0.508	1.4e-70

TAIR|locus:2161840 TEX1 "AT5G56130" [Arabidopsis thaliana (taxid:3702)]

 Score = 815 (292.0 bits), Expect = 1.4e-142, Sum P(2) = 1.4e-142
 Identities = 144/169 (85%), Positives = 158/169 (93%)

Query:     1 MGESSIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDI 60
             M E++IPFK+LHSREY GHKKKVHSVAWN  GTKLASGSVDQTAR+W+IEPHGH K KD+
Sbjct:     1 MEETTIPFKSLHSREYQGHKKKVHSVAWNSNGTKLASGSVDQTARIWNIEPHGHSKAKDL 60

Query:    61 ELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDG 120
             EL+GH DSVDQLCWDPKH+DL+ATASGDK+VRLWDARSGKC+QQ ELSGENINITYKPDG
Sbjct:    61 ELKGHTDSVDQLCWDPKHSDLVATASGDKSVRLWDARSGKCTQQVELSGENINITYKPDG 120

Query:   121 THIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG 169
             TH+AVGNRDDELTILDVRKFKP+HRRKF YEVNEIAWNM G+ FFLTTG
Sbjct:   121 THVAVGNRDDELTILDVRKFKPLHRRKFNYEVNEIAWNMPGDFFFLTTG 169

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=IMP

GO:0031047 "gene silencing by RNA" evidence=IMP

ZFIN|ZDB-GENE-040808-14 thoc3 "THO complex 3" [Danio rerio (taxid:7955)]

 Score = 472 (171.2 bits), Expect = 1.1e-80, Sum P(2) = 1.1e-80
 Identities = 92/174 (52%), Positives = 115/174 (66%)

Query:     8 FKNLH-SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHA 66
             F+N + SRE+  H  KVHSVAW+C G +LASGS D+TA V+ +E      VK+   RGH 
Sbjct:    13 FRNNNKSREFPAHSAKVHSVAWSCDGKRLASGSFDKTASVFVLEKDR--LVKENNYRGHG 70

Query:    67 DSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVG 126
             DSVDQLCW P + DL  TASGDKT+R+WD R+ KC       GENINI + PDG  IAVG
Sbjct:    71 DSVDQLCWHPTNPDLFVTASGDKTIRIWDVRTTKCMATVSTKGENINICWSPDGQTIAVG 130

Query:   127 NRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDP 180
             N+DD +T +D +  +P    +F +EVNEI+WN   +MFFLT GN GC  I   P
Sbjct:   131 NKDDVVTFIDAKTHRPRAEEQFKFEVNEISWNNDNDMFFLTNGN-GCINILSYP 183

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|F1NUQ0 THOC3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 462 (167.7 bits), Expect = 1.5e-79, Sum P(2) = 1.5e-79
 Identities = 90/171 (52%), Positives = 110/171 (64%)

Query:    10 NLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSV 69
             N  SRE+  H  KVHSVAW+C G +LASGS D+TA V+ +E      VK+   RGH DSV
Sbjct:    17 NTRSREFPAHGAKVHSVAWSCCGRRLASGSFDKTASVFLLEKDR--LVKENNYRGHGDSV 74

Query:    70 DQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRD 129
             DQLCW P + DL  TASGDKT+R+WD R+ KC       GENINI + PDG  IAVGN+D
Sbjct:    75 DQLCWHPSNPDLFVTASGDKTIRIWDVRTTKCIATVNTKGENINICWSPDGQTIAVGNKD 134

Query:   130 DELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDP 180
             D +T +D +  +     +F +EVNEI+WN    MFFLT GN GC  I   P
Sbjct:   135 DVVTFIDAKTHRSKAEEQFKFEVNEISWNNDNNMFFLTNGN-GCINILSYP 184

GO:0000346 "transcription export complex" evidence=IEA

GO:0046784 "intronless viral mRNA export from host nucleus" evidence=IEA

UNIPROTKB|Q29RH4 THOC3 "THO complex subunit 3" [Bos taurus (taxid:9913)]

 Score = 456 (165.6 bits), Expect = 1.5e-79, Sum P(2) = 1.5e-79
 Identities = 88/168 (52%), Positives = 109/168 (64%)

Query:    13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQL 72
             +RE+  H  KVHSVAW+C G +LASGS D+TA V+ +E      VK+   RGH DSVDQL
Sbjct:    48 TREFPAHSAKVHSVAWSCDGRRLASGSFDKTASVFLLEKDR--LVKENNYRGHGDSVDQL 105

Query:    73 CWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDEL 132
             CW P + DL  TASGDKT+R+WD R+ KC       GENINI + PDG  IAVGN+DD +
Sbjct:   106 CWHPSNPDLFVTASGDKTIRIWDVRTTKCIATVNTKGENINICWSPDGQTIAVGNKDDVV 165

Query:   133 TILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDP 180
             T +D +  +     +F +EVNEI+WN    MFFLT GN GC  I   P
Sbjct:   166 TFIDAKTHRSKAEEQFKFEVNEISWNNDNNMFFLTNGN-GCINILSYP 212

GO:0005634 "nucleus" evidence=IEA

GO:0051028 "mRNA transport" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|E2RC43 THOC3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 456 (165.6 bits), Expect = 1.5e-79, Sum P(2) = 1.5e-79
 Identities = 88/168 (52%), Positives = 109/168 (64%)

Query:    13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQL 72
             +RE+  H  KVHSVAW+C G +LASGS D+TA V+ +E      VK+   RGH DSVDQL
Sbjct:    48 TREFPAHSAKVHSVAWSCDGRRLASGSFDKTASVFLLEKDR--LVKENNYRGHGDSVDQL 105

Query:    73 CWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDEL 132
             CW P + DL  TASGDKT+R+WD R+ KC       GENINI + PDG  IAVGN+DD +
Sbjct:   106 CWHPSNPDLFVTASGDKTIRIWDVRTTKCIATVNTKGENINICWSPDGQTIAVGNKDDVV 165

Query:   133 TILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDP 180
             T +D +  +     +F +EVNEI+WN    MFFLT GN GC  I   P
Sbjct:   166 TFIDAKTHRSKAEEQFKFEVNEISWNNDNNMFFLTNGN-GCINILSYP 212

GO:0046784 "intronless viral mRNA export from host nucleus" evidence=IEA

GO:0000346 "transcription export complex" evidence=IEA

UNIPROTKB|Q96J01 THOC3 "THO complex subunit 3" [Homo sapiens (taxid:9606)]

 Score = 456 (165.6 bits), Expect = 1.5e-79, Sum P(2) = 1.5e-79
 Identities = 88/168 (52%), Positives = 109/168 (64%)

Query:    13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQL 72
             +RE+  H  KVHSVAW+C G +LASGS D+TA V+ +E      VK+   RGH DSVDQL
Sbjct:    48 TREFLAHSAKVHSVAWSCDGRRLASGSFDKTASVFLLEKDR--LVKENNYRGHGDSVDQL 105

Query:    73 CWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDEL 132
             CW P + DL  TASGDKT+R+WD R+ KC       GENINI + PDG  IAVGN+DD +
Sbjct:   106 CWHPSNPDLFVTASGDKTIRIWDVRTTKCIATVNTKGENINICWSPDGQTIAVGNKDDVV 165

Query:   133 TILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDP 180
             T +D +  +     +F +EVNEI+WN    MFFLT GN GC  I   P
Sbjct:   166 TFIDAKTHRSKAEEQFKFEVNEISWNNDNNMFFLTNGN-GCINILSYP 212

GO:0003723 "RNA binding" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0006406 "mRNA export from nucleus" evidence=IDA

GO:0000346 "transcription export complex" evidence=IDA

GO:0046784 "intronless viral mRNA export from host nucleus" evidence=IDA

UNIPROTKB|F1S386 THOC3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 456 (165.6 bits), Expect = 1.5e-79, Sum P(2) = 1.5e-79
 Identities = 88/168 (52%), Positives = 109/168 (64%)

Query:    13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQL 72
             +RE+  H  KVHSVAW+C G +LASGS D+TA V+ +E      VK+   RGH DSVDQL
Sbjct:    48 TREFPAHSAKVHSVAWSCDGRRLASGSFDKTASVFLLEKDR--LVKENNYRGHGDSVDQL 105

Query:    73 CWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDEL 132
             CW P + DL  TASGDKT+R+WD R+ KC       GENINI + PDG  IAVGN+DD +
Sbjct:   106 CWHPSNPDLFVTASGDKTIRIWDVRTTKCIATVNTKGENINICWSPDGQTIAVGNKDDVV 165

Query:   133 TILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDP 180
             T +D +  +     +F +EVNEI+WN    MFFLT GN GC  I   P
Sbjct:   166 TFIDAKTHRSKAEEQFKFEVNEISWNNDNNMFFLTNGN-GCINILSYP 212

GO:0046784 "intronless viral mRNA export from host nucleus" evidence=IEA

GO:0000346 "transcription export complex" evidence=IEA

MGI|MGI:1920916 Thoc3 "THO complex 3" [Mus musculus (taxid:10090)]

 Score = 456 (165.6 bits), Expect = 1.5e-79, Sum P(2) = 1.5e-79
 Identities = 88/168 (52%), Positives = 109/168 (64%)

Query:    13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQL 72
             +RE+  H  KVHSVAW+C G +LASGS D+TA V+ +E      VK+   RGH DSVDQL
Sbjct:    48 TREFPAHSAKVHSVAWSCDGRRLASGSFDKTASVFLLEKDR--LVKENNYRGHGDSVDQL 105

Query:    73 CWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDEL 132
             CW P + DL  TASGDKT+R+WD R+ KC       GENINI + PDG  IAVGN+DD +
Sbjct:   106 CWHPSNPDLFVTASGDKTIRIWDVRTTKCIATVNTKGENINICWSPDGQTIAVGNKDDVV 165

Query:   133 TILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDP 180
             T +D +  +     +F +EVNEI+WN    MFFLT GN GC  I   P
Sbjct:   166 TFIDAKTHRSKAEEQFKFEVNEISWNNDNNMFFLTNGN-GCINILSYP 212

GO:0000346 "transcription export complex" evidence=ISO

GO:0003674 "molecular_function" evidence=ND

GO:0003723 "RNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0006406 "mRNA export from nucleus" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0046784 "intronless viral mRNA export from host nucleus" evidence=ISO

GO:0051028 "mRNA transport" evidence=IEA

RGD|1311669 Thoc3 "THO complex 3" [Rattus norvegicus (taxid:10116)]

 Score = 456 (165.6 bits), Expect = 1.5e-79, Sum P(2) = 1.5e-79
 Identities = 88/168 (52%), Positives = 109/168 (64%)

Query:    13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQL 72
             +RE+  H  KVHSVAW+C G +LASGS D+TA V+ +E      VK+   RGH DSVDQL
Sbjct:    48 TREFPAHSAKVHSVAWSCDGRRLASGSFDKTASVFLLEKDR--LVKENNYRGHGDSVDQL 105

Query:    73 CWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDEL 132
             CW P + DL  TASGDKT+R+WD R+ KC       GENINI + PDG  IAVGN+DD +
Sbjct:   106 CWHPSNPDLFVTASGDKTIRIWDVRTTKCIATVNTKGENINICWSPDGQTIAVGNKDDVV 165

Query:   133 TILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDP 180
             T +D +  +     +F +EVNEI+WN    MFFLT GN GC  I   P
Sbjct:   166 TFIDAKTHRSKAEEQFKFEVNEISWNNDNNMFFLTNGN-GCINILSYP 212

GO:0000346 "transcription export complex" evidence=IEA;ISO

GO:0006406 "mRNA export from nucleus" evidence=ISO

GO:0046784 "intronless viral mRNA export from host nucleus" evidence=IEA;ISO

FB|FBgn0037569 tex "tex" [Drosophila melanogaster (taxid:7227)]

 Score = 411 (149.7 bits), Expect = 1.4e-70, Sum P(2) = 1.4e-70
 Identities = 87/171 (50%), Positives = 102/171 (59%)

Query:    12 HS--REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSV 69
             HS  RE   H  KVHSV WN  G  LASGS D+T  V+ +E      +K    RGH  SV
Sbjct:    18 HSKIREQRSHMSKVHSVCWNADGRYLASGSFDKTVVVYSLERDRF--LKGNTYRGHTASV 75

Query:    70 DQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRD 129
             DQLCW   + D  ATASGDKTVR+WD R GKC       GENINI + PDG  IAVGN++
Sbjct:    76 DQLCWHRTNPDQFATASGDKTVRIWDIRVGKCVSVTNTKGENINIAWSPDGKTIAVGNKE 135

Query:   130 DELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDP 180
             D +T +D R  K      F +EVNEI+WN T ++FFLT G  GC  I   P
Sbjct:   136 DLITFIDTRTNKIRVEEPFSFEVNEISWNNTNDLFFLTNG-LGCMHILSYP 185

GO:0005875 "microtubule associated complex" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9USL1	YJKA_SCHPO	No assigned EC number	0.3389	0.9317	0.8834	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	293
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-35
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-35
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-35
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-23
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-23
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-22
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	5e-22
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-21
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	5e-20
PTZ00420	568	PTZ00420, PTZ00420, coronin; Provisional	5e-08
smart00320	40	smart00320, WD40, WD40 repeats	3e-06
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	4e-06
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	7e-06
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	1e-05
smart00320	40	smart00320, WD40, WD40 repeats	2e-05
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	8e-05
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-04
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	5e-04
smart00320	40	smart00320, WD40, WD40 repeats	0.003
PTZ00420	568	PTZ00420, PTZ00420, coronin; Provisional	0.004

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  129 bits (326), Expect = 1e-35
 Identities = 76/266 (28%), Positives = 118/266 (44%), Gaps = 31/266 (11%)

Query: 14  REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
           R   GH   V  VA +  GT LASGS D+T R+W +E           L GH   V  + 
Sbjct: 45  RTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE----TGECVRTLTGHTSYVSSVA 100

Query: 74  WDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGEN---INITYKPDGTHIAVGNRDD 130
           + P    +++++S DKT+++WD  +GKC     L G      ++ + PDGT +A  ++D 
Sbjct: 101 FSPDG-RILSSSSRDKTIKVWDVETGKCLT--TLRGHTDWVNSVAFSPDGTFVASSSQDG 157

Query: 131 ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSA 190
            + + D+R  K +                      LT        +A  P G      S+
Sbjct: 158 TIKLWDLRTGKCVAT--------------------LTGHTGEVNSVAFSPDGEKLLSSSS 197

Query: 191 DSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQI 250
           D  + LWD+S   C+ T    E  V +++FS  G  +AS SED  I + ++ TG  V  +
Sbjct: 198 DGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTL 257

Query: 251 PC-RAAMNSVEWNPKYNLLAYAGDDK 275
                ++ S+ W+P    LA    D 
Sbjct: 258 SGHTNSVTSLAWSPDGKRLASGSADG 283

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  128 bits (325), Expect = 1e-35
 Identities = 66/224 (29%), Positives = 101/224 (45%), Gaps = 26/224 (11%)

Query: 14  REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
           R  TGH   V SVA++  G  L+S S D+T +VW +E    GK     LRGH D V+ + 
Sbjct: 87  RTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVET---GKCL-TTLRGHTDWVNSVA 142

Query: 74  WDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENIN-ITYKPDGTHIAVGNRDDEL 132
           + P     +A++S D T++LWD R+GKC          +N + + PDG  +   + D  +
Sbjct: 143 FSPDG-TFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTI 201

Query: 133 TILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADS 192
            + D+   K +                      L     G   +A  P G   A GS D 
Sbjct: 202 KLWDLSTGKCLGT--------------------LRGHENGVNSVAFSPDGYLLASGSEDG 241

Query: 193 LVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFI 236
            + +WD+    CV+T +     V ++++S  G  +AS S D  I
Sbjct: 242 TIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTI 285

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  128 bits (324), Expect = 2e-35
 Identities = 73/269 (27%), Positives = 116/269 (43%), Gaps = 31/269 (11%)

Query: 12  HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQ 71
             R   GH   V  VA++  G  LA+GS D T +VW +E           L+GH   V  
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLE----TGELLRTLKGHTGPVRD 56

Query: 72  LCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINIT---YKPDGTHIAVGNR 128
           +         +A+ S DKT+RLWD  +G+C +   L+G    ++   + PDG  ++  +R
Sbjct: 57  VAASA-DGTYLASGSSDKTIRLWDLETGECVR--TLTGHTSYVSSVAFSPDGRILSSSSR 113

Query: 129 DDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVG 188
           D  + + DV   K +                      L         +A  P G + A  
Sbjct: 114 DKTIKVWDVETGKCLTT--------------------LRGHTDWVNSVAFSPDGTFVASS 153

Query: 189 SADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVH 248
           S D  + LWD+    CV T T     V +++FS  G+ + S+S D  I + ++ TG+ + 
Sbjct: 154 SQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLG 213

Query: 249 QIP-CRAAMNSVEWNPKYNLLAYAGDDKN 276
            +      +NSV ++P   LLA   +D  
Sbjct: 214 TLRGHENGVNSVAFSPDGYLLASGSEDGT 242

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 99.4 bits (246), Expect = 1e-23
 Identities = 76/270 (28%), Positives = 127/270 (47%), Gaps = 30/270 (11%)

Query: 13  SREYTGHKKKVHSVAWNCTGTKLASGS-VDQTARVWHIEPHGHGKVKDIELRGHADSVDQ 71
            R   GH + V S+A++  G  LASGS +D T ++W +            L GH D V  
Sbjct: 148 IRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLST----LAGHTDPVSS 203

Query: 72  LCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI--TYKPDGTHIAVGNRD 129
           L + P    LIA+ S D T+RLWD  +GK  +   LSG + ++  ++ PDG+ +A G+ D
Sbjct: 204 LAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRS-TLSGHSDSVVSSFSPDGSLLASGSSD 262

Query: 130 DELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGS 189
             + + D+R    + R                    L+  ++    +A  P G+  A GS
Sbjct: 263 GTIRLWDLRSSSSLLR-------------------TLSGHSSSVLSVAFSPDGKLLASGS 303

Query: 190 ADSLVSLWDISEMLCVRTFTKL--EWPVRTISFSHTGDYIASA-SEDLFIDISNVHTGRT 246
           +D  V LWD+     + + T    E PV ++SFS  G  + S  S+D  I + ++ TG+ 
Sbjct: 304 SDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKP 363

Query: 247 VHQIPCRAAMNSVEWNPKYNLLAYAGDDKN 276
           +  +   + + SV ++P   +++    D  
Sbjct: 364 LKTLEGHSNVLSVSFSPDGRVVSSGSTDGT 393

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 99.0 bits (245), Expect = 2e-23
 Identities = 68/243 (27%), Positives = 105/243 (43%), Gaps = 30/243 (12%)

Query: 5   SIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG 64
            +    L     +GH   V S +++  G+ LASGS D T R+W +            L G
Sbjct: 227 DLSTGKLLRSTLSGHSDSVVS-SFSPDGSLLASGSSDGTIRLWDLR---SSSSLLRTLSG 282

Query: 65  HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINIT---YKPDGT 121
           H+ SV  + + P    L+A+ S D TVRLWD  +GK      L G    ++   + PDG+
Sbjct: 283 HSSSVLSVAFSPDG-KLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGS 341

Query: 122 HIAVGNRDDE-LTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDP 180
            +  G  DD  + + D+R  KP+   +    V  ++++                     P
Sbjct: 342 LLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFS---------------------P 380

Query: 181 MGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISN 240
            GR  + GS D  V LWD+S    +R        V ++ FS  G  +AS S D  I + +
Sbjct: 381 DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWD 440

Query: 241 VHT 243
           + T
Sbjct: 441 LKT 443

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 92.8 bits (231), Expect = 5e-22
 Identities = 49/186 (26%), Positives = 80/186 (43%), Gaps = 26/186 (13%)

Query: 14  REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
               GH   V+SVA++  GT +AS S D T ++W +            L GH   V+ + 
Sbjct: 129 TTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVAT----LTGHTGEVNSVA 184

Query: 74  WDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENIN-ITYKPDGTHIAVGNRDDEL 132
           + P    L+ ++S D T++LWD  +GKC          +N + + PDG  +A G+ D  +
Sbjct: 185 FSPDGEKLL-SSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTI 243

Query: 133 TILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADS 192
            + D+R  + +                      L+        +A  P G+  A GSAD 
Sbjct: 244 RVWDLRTGECVQT--------------------LSGHTNSVTSLAWSPDGKRLASGSADG 283

Query: 193 LVSLWD 198
            + +WD
Sbjct: 284 TIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 95.2 bits (235), Expect = 5e-22
 Identities = 75/283 (26%), Positives = 120/283 (42%), Gaps = 32/283 (11%)

Query: 3   ESSIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIEL 62
           +S +   +L S    GH+  + S+A++  G  L SGS D T ++W ++    G+     L
Sbjct: 48  DSLVSLPDLSSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDN---GEKLIKSL 104

Query: 63  RG-HADSVDQLCWDPKHADLIATASG--DKTVRLWDARS-GKCSQQAELSGENIN-ITYK 117
            G H  SV +L       + I  AS   D TV+LWD  + GK  +  E   E++  + + 
Sbjct: 105 EGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFS 164

Query: 118 PDGTHIAVGNRDDELTIL-DVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCI 176
           PDG  +A G+  D    L D+R  KP+                      L         +
Sbjct: 165 PDGKLLASGSSLDGTIKLWDLRTGKPLS--------------------TLAGHTDPVSSL 204

Query: 177 AIDPMGR-YFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLF 235
           A  P G    A GS+D  + LWD+S    +R+           SFS  G  +AS S D  
Sbjct: 205 AFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGT 264

Query: 236 IDISNVHTGRTVHQIPCR--AAMNSVEWNPKYNLLAYAGDDKN 276
           I + ++ +  ++ +      +++ SV ++P   LLA    D  
Sbjct: 265 IRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGT 307

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 93.6 bits (231), Expect = 2e-21
 Identities = 65/267 (24%), Positives = 115/267 (43%), Gaps = 32/267 (11%)

Query: 19  HKKKVHSVAWNCTGTK---LASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWD 75
           H   V  +A +        LAS S+D T ++W +   G        L GH++SV  L + 
Sbjct: 108 HDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRT---LEGHSESVTSLAFS 164

Query: 76  PKHADLIATASGDKTVRLWDARSGKC-SQQAELSGENINITYKPDGTHIAVGNRDD-ELT 133
           P    L + +S D T++LWD R+GK  S  A  +    ++ + PDG  +      D  + 
Sbjct: 165 PDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIR 224

Query: 134 ILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSL 193
           + D+   K +     G+  + +                     +  P G   A GS+D  
Sbjct: 225 LWDLSTGKLLRSTLSGHSDSVV--------------------SSFSPDGSLLASGSSDGT 264

Query: 194 VSLWDI-SEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPC 252
           + LWD+ S    +RT +     V +++FS  G  +AS S D  + + ++ TG+ +  +  
Sbjct: 265 IRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTL 324

Query: 253 RA---AMNSVEWNPKYNLLAYAGDDKN 276
           +     ++S+ ++P  +LL   G D  
Sbjct: 325 KGHEGPVSSLSFSPDGSLLVSGGSDDG 351

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 89.4 bits (220), Expect = 5e-20
 Identities = 62/230 (26%), Positives = 101/230 (43%), Gaps = 34/230 (14%)

Query: 5   SIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG 64
            +   +   R  +GH   V SVA++  G  LASGS D T R+W +E      +  + L+G
Sbjct: 269 DLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLE--TGKLLSSLTLKG 326

Query: 65  HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIA 124
           H   V  L + P  + L++  S D T+RLWD R+GK  +  E     +++++ PDG  ++
Sbjct: 327 HEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVS 386

Query: 125 VGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRY 184
            G+ D  + + D+     +                      L    +    +   P G+ 
Sbjct: 387 SGSTDGTVRLWDLSTGSLLR--------------------NLDGHTSRVTSLDFSPDGKS 426

Query: 185 FAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDL 234
            A GS+D+ + LWD+   L             ++SFS  G  +AS S DL
Sbjct: 427 LASGSSDNTIRLWDLKTSLK------------SVSFSPDGKVLASKSSDL 464

Length = 466

>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional

 Score = 53.4 bits (128), Expect = 5e-08
 Identities = 45/171 (26%), Positives = 73/171 (42%), Gaps = 25/171 (14%)

Query: 18  GHKKKVHSVAWN-CTGTKLASGSVDQTARVWHIEPHGHGKVKDIE-----LRGHADSVDQ 71
           GH   +  + +N C    LASGS D T RVW I PH    VK+I+     L+GH   +  
Sbjct: 72  GHTSSILDLQFNPCFSEILASGSEDLTIRVWEI-PHNDESVKEIKDPQCILKGHKKKISI 130

Query: 72  LCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDE 131
           + W+P +  ++ ++  D  V +WD  + K + Q  +  +  ++ +   G  ++       
Sbjct: 131 IDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKH 190

Query: 132 LTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMG 182
           + I+D RK              EIA       F +  G      I ID +G
Sbjct: 191 MHIIDPRK-------------QEIA-----SSFHIHDGGKNTKNIWIDGLG 223

Length = 568

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 42.7 bits (101), Expect = 3e-06
 Identities = 15/35 (42%), Positives = 20/35 (57%)

Query: 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWH 48
          +   GH   V SVA++  G  LASGS D T ++W 
Sbjct: 6  KTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 42.7 bits (101), Expect = 4e-06
 Identities = 18/35 (51%), Positives = 20/35 (57%)

Query: 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWH 48
          R   GH   V SVA++  G  LASGS D T RVW 
Sbjct: 5  RTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 42.0 bits (99), Expect = 7e-06
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 61 ELRGHADSVDQLCWDPKHADLIATASGDKTVRLWD 95
           L+GH   V  + + P   +L+A+ S D TVR+WD
Sbjct: 6  TLKGHTGPVTSVAFSPDG-NLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 45.7 bits (108), Expect = 1e-05
 Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 8/98 (8%)

Query: 15  EYTGHKKKVHSVAWNCTGTK-LASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
              GH KKV  V+++ +    LAS   D    VW +E    GK  ++ ++ H+D +  L 
Sbjct: 120 HLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVE---RGKAVEV-IKCHSDQITSLE 175

Query: 74  WDPKHADLIATASGDKTVRLWDARSGK--CSQQAELSG 109
           W+     L+ T S DK + + D R G    S +A  S 
Sbjct: 176 WNLD-GSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASA 212

Length = 493

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 40.8 bits (96), Expect = 2e-05
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 61 ELRGHADSVDQLCWDPKHADLIATASGDKTVRLWD 95
           L+GH   V  + + P     +A+ S D T++LWD
Sbjct: 7  TLKGHTGPVTSVAFSP-DGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 43.3 bits (102), Expect = 8e-05
 Identities = 34/127 (26%), Positives = 60/127 (47%), Gaps = 5/127 (3%)

Query: 18  GHKKKVHSVAWN-CTGTKLASGSVDQTARVWHIEPHG-HGKVKD--IELRGHADSVDQLC 73
           G +  +  VA+N     KL + S D T   W I   G    + D  + L+GH   V  + 
Sbjct: 73  GQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVS 132

Query: 74  WDPKHADLIATASGDKTVRLWDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDEL 132
           + P   +++A+A  D  V +WD   GK  +  +  S +  ++ +  DG+ +   ++D +L
Sbjct: 133 FHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKL 192

Query: 133 TILDVRK 139
            I+D R 
Sbjct: 193 NIIDPRD 199

Length = 493

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 16/35 (45%), Positives = 22/35 (62%)

Query: 13  SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVW 47
            +  +GH   V S+AW+  G +LASGS D T R+W
Sbjct: 254 VQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIW 288

Length = 289

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 36.6 bits (85), Expect = 5e-04
 Identities = 11/36 (30%), Positives = 14/36 (38%)

Query: 163 MFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWD 198
           +  L         +A  P G   A GS D  V +WD
Sbjct: 4   LRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 34.6 bits (80), Expect = 0.003
 Identities = 11/29 (37%), Positives = 14/29 (48%)

Query: 170 NAGCYCIAIDPMGRYFAVGSADSLVSLWD 198
                 +A  P G+Y A GS D  + LWD
Sbjct: 12  TGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional

 Score = 38.4 bits (89), Expect = 0.004
 Identities = 34/164 (20%), Positives = 63/164 (38%), Gaps = 60/164 (36%)

Query: 60  IELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPD 119
           I+L+GH  S+  L ++P  ++++A+ S D T+R+W+            + E++     P 
Sbjct: 68  IKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPH---------NDESVKEIKDP- 117

Query: 120 GTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAID 179
                         IL        H++K    ++ I WN                     
Sbjct: 118 ------------QCILKG------HKKK----ISIIDWN--------------------- 134

Query: 180 PMGRYFAVGSA-DSLVSLWDIS------EMLCVRTFTKLEWPVR 216
           PM  Y    S  DS V++WDI       ++   +  + L+W ++
Sbjct: 135 PMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIK 178

Length = 568

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	293
KOG1407	313	consensus WD40 repeat protein [Function unknown]	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0283	712	consensus WD40 repeat-containing protein [Function	100.0
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	100.0
KOG0772	641	consensus Uncharacterized conserved protein, conta	100.0
PTZ00421	493	coronin; Provisional	100.0
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.98
PTZ00420	568	coronin; Provisional	99.97
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.97
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.97
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.97
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.97
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.97
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.97
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.97
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.97
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.97
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.97
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.97
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.97
KOG0641	350	consensus WD40 repeat protein [General function pr	99.97
KOG0289	506	consensus mRNA splicing factor [General function p	99.97
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.97
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.97
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.97
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.97
PTZ00421	493	coronin; Provisional	99.97
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.97
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.97
KOG0296	399	consensus Angio-associated migratory cell protein	99.96
KOG0289	506	consensus mRNA splicing factor [General function p	99.96
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.96
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.96
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.96
PTZ00420	568	coronin; Provisional	99.96
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.96
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.96
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.96
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.96
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.96
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.96
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.96
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.96
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.95
KOG0645	312	consensus WD40 repeat protein [General function pr	99.95
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.95
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.95
PLN00181	793	protein SPA1-RELATED; Provisional	99.95
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.95
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.95
KOG2096	420	consensus WD40 repeat protein [General function pr	99.95
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.95
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.95
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.95
KOG2055	514	consensus WD40 repeat protein [General function pr	99.94
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.94
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.94
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.94
KOG0639	705	consensus Transducin-like enhancer of split protei	99.94
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.94
KOG0267	825	consensus Microtubule severing protein katanin p80	99.94
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.94
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.93
KOG1274	933	consensus WD40 repeat protein [General function pr	99.93
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.93
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.93
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.93
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.93
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.93
KOG0643	327	consensus Translation initiation factor 3, subunit	99.93
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.93
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.93
KOG1273	405	consensus WD40 repeat protein [General function pr	99.92
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.92
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.92
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.92
KOG0646	476	consensus WD40 repeat protein [General function pr	99.92
KOG1539	910	consensus WD repeat protein [General function pred	99.92
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.92
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.92
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.92
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.92
KOG4328	498	consensus WD40 protein [Function unknown]	99.91
KOG0639	705	consensus Transducin-like enhancer of split protei	99.91
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.91
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.91
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.91
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.91
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.91
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.91
KOG0267	825	consensus Microtubule severing protein katanin p80	99.9
KOG0641	350	consensus WD40 repeat protein [General function pr	99.9
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.9
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.9
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.9
KOG0646	476	consensus WD40 repeat protein [General function pr	99.9
KOG2048	691	consensus WD40 repeat protein [General function pr	99.9
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.89
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.89
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.88
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.88
KOG1274	933	consensus WD40 repeat protein [General function pr	99.88
KOG1539	910	consensus WD repeat protein [General function pred	99.88
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.87
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.87
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.87
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.86
KOG2048	691	consensus WD40 repeat protein [General function pr	99.86
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.86
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.85
KOG4227	609	consensus WD40 repeat protein [General function pr	99.85
KOG1273	405	consensus WD40 repeat protein [General function pr	99.85
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.84
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.84
KOG2096	420	consensus WD40 repeat protein [General function pr	99.83
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.83
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.83
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.83
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.82
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.82
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.82
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.82
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.82
PRK11028	330	6-phosphogluconolactonase; Provisional	99.82
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.81
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.81
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.81
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.8
COG2319	466	FOG: WD40 repeat [General function prediction only	99.8
KOG2055	514	consensus WD40 repeat protein [General function pr	99.79
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.79
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.79
PRK01742	429	tolB translocation protein TolB; Provisional	99.79
KOG4328	498	consensus WD40 protein [Function unknown]	99.79
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.77
COG2319	466	FOG: WD40 repeat [General function prediction only	99.77
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.76
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.76
KOG1188	376	consensus WD40 repeat protein [General function pr	99.76
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.76
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.76
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.75
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.74
KOG1963	792	consensus WD40 repeat protein [General function pr	99.74
PRK01742	429	tolB translocation protein TolB; Provisional	99.74
KOG1310	758	consensus WD40 repeat protein [General function pr	99.73
KOG1334	559	consensus WD40 repeat protein [General function pr	99.73
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.73
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.72
PRK03629	429	tolB translocation protein TolB; Provisional	99.72
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.72
PRK11028	330	6-phosphogluconolactonase; Provisional	99.72
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.72
KOG0649	325	consensus WD40 repeat protein [General function pr	99.71
PRK05137	435	tolB translocation protein TolB; Provisional	99.71
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.71
PRK04922	433	tolB translocation protein TolB; Provisional	99.71
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.71
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.7
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.7
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.69
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.69
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.69
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.68
KOG1188	376	consensus WD40 repeat protein [General function pr	99.67
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.67
KOG1963	792	consensus WD40 repeat protein [General function pr	99.67
KOG2321	703	consensus WD40 repeat protein [General function pr	99.67
PRK03629	429	tolB translocation protein TolB; Provisional	99.66
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.66
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.66
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.66
PRK02889	427	tolB translocation protein TolB; Provisional	99.65
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.65
KOG0649	325	consensus WD40 repeat protein [General function pr	99.64
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.64
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.64
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.63
PRK02889	427	tolB translocation protein TolB; Provisional	99.63
PRK04922	433	tolB translocation protein TolB; Provisional	99.63
PRK05137	435	tolB translocation protein TolB; Provisional	99.63
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.61
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.6
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.59
KOG2139	445	consensus WD40 repeat protein [General function pr	99.58
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.58
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.58
PRK00178	430	tolB translocation protein TolB; Provisional	99.56
KOG4227	609	consensus WD40 repeat protein [General function pr	99.55
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.54
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.53
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.52
PRK04792	448	tolB translocation protein TolB; Provisional	99.52
KOG2139	445	consensus WD40 repeat protein [General function pr	99.51
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.51
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.5
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.5
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.49
PRK01029	428	tolB translocation protein TolB; Provisional	99.48
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.48
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.48
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.47
PRK00178	430	tolB translocation protein TolB; Provisional	99.47
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.46
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.45
PRK04792	448	tolB translocation protein TolB; Provisional	99.44
PRK01029	428	tolB translocation protein TolB; Provisional	99.43
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.43
KOG2314	698	consensus Translation initiation factor 3, subunit	99.42
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.41
KOG2321	703	consensus WD40 repeat protein [General function pr	99.37
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.36
KOG1310	758	consensus WD40 repeat protein [General function pr	99.34
KOG2315	566	consensus Predicted translation initiation factor	99.33
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.32
KOG2315	566	consensus Predicted translation initiation factor	99.31
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.29
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.28
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.26
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.24
KOG4547	541	consensus WD40 repeat-containing protein [General	99.23
KOG4547	541	consensus WD40 repeat-containing protein [General	99.23
KOG1334	559	consensus WD40 repeat protein [General function pr	99.21
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.21
PRK04043	419	tolB translocation protein TolB; Provisional	99.16
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.15
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.13
PRK04043	419	tolB translocation protein TolB; Provisional	99.13
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.11
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.09
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.09
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.08
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.08
KOG2695	425	consensus WD40 repeat protein [General function pr	99.08
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.06
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.05
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.05
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	99.02
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.01
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.01
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	99.01
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.0
KOG1409	404	consensus Uncharacterized conserved protein, conta	98.99
COG4946	668	Uncharacterized protein related to the periplasmic	98.99
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.98
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.97
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.95
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.95
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.9
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.85
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.81
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.8
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.8
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.79
COG4946	668	Uncharacterized protein related to the periplasmic	98.78
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.77
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.77
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.67
KOG2314	698	consensus Translation initiation factor 3, subunit	98.61
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.59
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.55
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.54
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.53
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.53
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.5
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.5
KOG2695	425	consensus WD40 repeat protein [General function pr	98.49
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.47
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.46
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.44
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.43
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.43
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.42
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.42
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.38
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.32
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.32
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.31
PRK02888	635	nitrous-oxide reductase; Validated	98.3
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.29
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.28
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.27
COG3391	381	Uncharacterized conserved protein [Function unknow	98.27
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.23
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.22
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.16
PRK02888	635	nitrous-oxide reductase; Validated	98.14
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.12
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.11
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	98.04
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.02
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.01
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.01
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.01
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.99
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	97.96
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	97.94
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.92
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	97.86
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.85
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.82
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.82
COG3391	381	Uncharacterized conserved protein [Function unknow	97.76
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.76
KOG1912	1062	consensus WD40 repeat protein [General function pr	97.71
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.7
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.6
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.59
KOG2444	238	consensus WD40 repeat protein [General function pr	97.46
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.36
KOG2395	644	consensus Protein involved in vacuole import and d	97.36
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.36
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.35
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.33
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.3
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.25
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.24
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.24
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.21
KOG3621	726	consensus WD40 repeat-containing protein [General	97.2
KOG3621	726	consensus WD40 repeat-containing protein [General	97.13
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.08
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.05
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.04
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.01
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	96.88
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	96.87
KOG2444	238	consensus WD40 repeat protein [General function pr	96.82
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.8
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.71
PRK13616	591	lipoprotein LpqB; Provisional	96.7
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	96.6
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.57
PHA02713	557	hypothetical protein; Provisional	96.54
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	96.53
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	96.5
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	96.43
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	96.35
PRK13616	591	lipoprotein LpqB; Provisional	96.33
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.31
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	96.3
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	96.14
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	95.97
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.78
KOG2395	644	consensus Protein involved in vacuole import and d	95.77
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	95.58
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	95.57
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	95.44
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	95.43
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	95.32
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	95.25
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	95.22
COG4590	733	ABC-type uncharacterized transport system, permeas	95.2
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	95.13
PHA03098	534	kelch-like protein; Provisional	95.13
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	95.04
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	94.91
PHA02713	557	hypothetical protein; Provisional	94.73
PHA03098	534	kelch-like protein; Provisional	94.69
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	94.66
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	94.63
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	94.43
PF14727	418	PHTB1_N: PTHB1 N-terminus	94.3
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	94.19
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	94.02
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	93.9
KOG2247	615	consensus WD40 repeat-containing protein [General	93.89
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	93.83
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	93.67
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	93.59
COG5167	776	VID27 Protein involved in vacuole import and degra	93.47
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	93.11
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	93.06
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	92.87
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	92.82
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	92.82
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	92.67
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	92.57
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	92.48
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	92.47
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	92.39
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	92.1
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	91.9
PHA02790	480	Kelch-like protein; Provisional	91.75
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	91.74
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	91.74
PRK13684	334	Ycf48-like protein; Provisional	91.26
KOG2247	615	consensus WD40 repeat-containing protein [General	90.71
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	90.57
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	90.38
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	90.04
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	90.0
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	89.8
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	89.57
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	89.54
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	89.37
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	89.15
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	88.85
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	88.74
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	88.66
PHA02790	480	Kelch-like protein; Provisional	87.51
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	87.32
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	86.86
PLN00033	398	photosystem II stability/assembly factor; Provisio	86.54
PF14727	418	PHTB1_N: PTHB1 N-terminus	86.52
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	86.21
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	85.13
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	85.01
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	84.3
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	84.1
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	83.07
PF13449	326	Phytase-like: Esterase-like activity of phytase	82.81
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	82.56
KOG2377	657	consensus Uncharacterized conserved protein [Funct	82.43
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	81.84
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	81.14
KOG2377	657	consensus Uncharacterized conserved protein [Funct	80.31

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=6.4e-51  Score=308.96  Aligned_cols=287  Identities=57%  Similarity=1.050  Sum_probs=265.8

Q ss_pred             cCcccccccceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEE
Q 022716            4 SSIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIA   83 (293)
Q Consensus         4 ~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~   83 (293)
                      ...+|+....+++.+|.++|++++|+.+|..|++|+.|+++++|+++..  .........+|.+.|-.++|+|..+++|+
T Consensus         4 t~~~~~~l~~r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~--r~~~~~~~~gh~~svdql~w~~~~~d~~a   81 (313)
T KOG1407|consen    4 TLPKFKSLKRRELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERD--RFRKELVYRGHTDSVDQLCWDPKHPDLFA   81 (313)
T ss_pred             cccchhhhhhHHhhhhhhcceEEEEcccCceeeecccCCceEEEEecch--hhhhhhcccCCCcchhhheeCCCCCcceE
Confidence            3456777788999999999999999999999999999999999999854  23334457799999999999999999999


Q ss_pred             EEeCCCeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCE
Q 022716           84 TASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEM  163 (293)
Q Consensus        84 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~  163 (293)
                      +++.|.+|++||++.+++....+..+..+.+.|+|+|.+++++..|..|...|.++.+.+...++..+++.+.|+..+++
T Consensus        82 tas~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~  161 (313)
T KOG1407|consen   82 TASGDKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDL  161 (313)
T ss_pred             EecCCceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999988888


Q ss_pred             EEEecCC---------------------CCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEcc
Q 022716          164 FFLTTGN---------------------AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSH  222 (293)
Q Consensus       164 ~~~~~~~---------------------~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp  222 (293)
                      ++++.+.                     ..|.||.|+|+|+++|+|++|-.+-+||++...+++.+..+++||+.|+||.
T Consensus       162 Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~  241 (313)
T KOG1407|consen  162 FFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSH  241 (313)
T ss_pred             EEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEecc
Confidence            8877653                     4588999999999999999999999999999999999999999999999999


Q ss_pred             CCCEEEEecCCCcEEEEEcCCCCEEEEEecCCCcceeEECCCCCeEEEEEcCCCC-CCCCcceEEEEeeec
Q 022716          223 TGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNK-YQADEGVFRIYGFEN  292 (293)
Q Consensus       223 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~d~~~-~~~~~~~~~~~~~~~  292 (293)
                      +|++||+||+|..|.|=++++|..++.+++.++...|+|||+..+||++.+|++- +-++.|++|||.+++
T Consensus       242 dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~~  312 (313)
T KOG1407|consen  242 DGRMLASASEDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGLSN  312 (313)
T ss_pred             CcceeeccCccceEEeEecccCCeEEEeeccCCceeEEecCCCceeeEEecCCCCccccccceeEEecCCC
Confidence            9999999999999999999999999999999999999999999999999999866 457889999999986

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.1e-43  Score=282.56  Aligned_cols=270  Identities=27%  Similarity=0.443  Sum_probs=220.7

Q ss_pred             CCcCcccccc----cceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCC
Q 022716            2 GESSIPFKNL----HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK   77 (293)
Q Consensus         2 ~~~~~~~~~~----~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~   77 (293)
                      |+..+.||+.    +..+.+||+..|.|++|+|||+.||+|+.||+|++||.....   ..-..+++|...|++++|.|-
T Consensus       135 GD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~---~~g~~l~gH~K~It~Lawep~  211 (480)
T KOG0271|consen  135 GDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQ---QIGRALRGHKKWITALAWEPL  211 (480)
T ss_pred             CCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCC---cccccccCcccceeEEeeccc
Confidence            5566777764    456688999999999999999999999999999999976532   222358899999999999873


Q ss_pred             ----CCCEEEEEeCCCeEEEEeCCCCeeeeeeeec-CceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeec-ccce
Q 022716           78 ----HADLIATASGDKTVRLWDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYE  151 (293)
Q Consensus        78 ----~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~-~~~~  151 (293)
                          ...+|+|++.||.++|||+..+.++..+..+ ..++|+.|--+| ++++|+.|++|++|+...+...+..+ +.+-
T Consensus       212 hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHahw  290 (480)
T KOG0271|consen  212 HLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAHW  290 (480)
T ss_pred             ccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccchh
Confidence                3568999999999999999999988876644 567788887554 89999999999999987654433322 2333


Q ss_pred             eeeeE-------------------------------------------------------EecCC---CEEEEecCCCCE
Q 022716          152 VNEIA-------------------------------------------------------WNMTG---EMFFLTTGNAGC  173 (293)
Q Consensus       152 ~~~v~-------------------------------------------------------~~~~~---~~~~~~~~~~~~  173 (293)
                      |+.++                                                       |+|..   ....+..|+.-+
T Consensus       291 vN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lV  370 (480)
T KOG0271|consen  291 VNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALV  370 (480)
T ss_pred             eeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhhe
Confidence            33333                                                       22211   111223344557


Q ss_pred             EEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEe-c
Q 022716          174 YCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP-C  252 (293)
Q Consensus       174 ~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~-~  252 (293)
                      ..+.|+||++++|+++-|+.|++||.++++.+.+|.+|..+|..++|+.|.++|++||.|.++++|++++.+....++ +
T Consensus       371 n~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh  450 (480)
T KOG0271|consen  371 NHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGH  450 (480)
T ss_pred             eeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCC
Confidence            889999999999999999999999999999999999999999999999999999999999999999999988877777 6


Q ss_pred             CCCcceeEECCCCCeEEEEEcCC
Q 022716          253 RAAMNSVEWNPKYNLLAYAGDDK  275 (293)
Q Consensus       253 ~~~i~~~~~sp~~~~la~~~~d~  275 (293)
                      ...|-++.|+|||..+++||.|+
T Consensus       451 ~DEVf~vDwspDG~rV~sggkdk  473 (480)
T KOG0271|consen  451 ADEVFAVDWSPDGQRVASGGKDK  473 (480)
T ss_pred             CceEEEEEecCCCceeecCCCce
Confidence            77899999999999999999996

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.6e-42  Score=278.94  Aligned_cols=257  Identities=22%  Similarity=0.331  Sum_probs=224.8

Q ss_pred             CccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCC-CCEEEEEeCCCeEEEEeC
Q 022716           18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKH-ADLIATASGDKTVRLWDA   96 (293)
Q Consensus        18 ~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~-~~~l~s~~~d~~i~vwd~   96 (293)
                      |-..+|..+.||.+++.|||||.+|.+++|+...    ......+.+|...+.++.|+|.. ...++||+.||++++|++
T Consensus       173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~----~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~  248 (459)
T KOG0272|consen  173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQ----CNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKL  248 (459)
T ss_pred             cCCCcceeeEeecCCCeEEEeecCCceeEeecCC----cceeEEEeccccceeeEEEccCCCccceeeeccCCceeeecc
Confidence            4568999999999999999999999999999863    23445789999999999999983 567999999999999999


Q ss_pred             CCCeeeeeeeec-CceEEEEEcCCCCEEEEEeCCCeEEEEEcccccee-eeecccceeeeeEEecCCCE-----------
Q 022716           97 RSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPI-HRRKFGYEVNEIAWNMTGEM-----------  163 (293)
Q Consensus        97 ~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~-~~~~~~~~~~~v~~~~~~~~-----------  163 (293)
                      .+...+..++.+ ..+..++|+|+|++|++++.|.+-++||++++..+ ....+..++.+++|+++|-+           
T Consensus       249 ~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~R  328 (459)
T KOG0272|consen  249 SQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGR  328 (459)
T ss_pred             CCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhh
Confidence            988777766644 45678999999999999999999999999987654 44456778888888887754           


Q ss_pred             ----------EEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEcc-CCCEEEEecC
Q 022716          164 ----------FFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSH-TGDYIASASE  232 (293)
Q Consensus       164 ----------~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp-~~~~l~s~s~  232 (293)
                                +++..|...|..++|+|+|..+|||+.|++++|||++....++++.+|.+-|+.|+|+| .|.+|+|+|.
T Consensus       329 vWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~Tasy  408 (459)
T KOG0272|consen  329 VWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASY  408 (459)
T ss_pred             eeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEccc
Confidence                      33455667899999999999999999999999999999888999999999999999999 6889999999


Q ss_pred             CCcEEEEEcCCCCEEEEEe-cCCCcceeEECCCCCeEEEEEcCCCCC
Q 022716          233 DLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNKY  278 (293)
Q Consensus       233 d~~i~iw~~~~~~~~~~~~-~~~~i~~~~~sp~~~~la~~~~d~~~~  278 (293)
                      |++++||...+..+++.+. +.+.|.+++.+|++..|++++.|+.++
T Consensus       409 D~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~K  455 (459)
T KOG0272|consen  409 DNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIK  455 (459)
T ss_pred             CcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceee
Confidence            9999999999999998875 566899999999999999999997443

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=7.7e-40  Score=281.63  Aligned_cols=244  Identities=27%  Similarity=0.468  Sum_probs=212.1

Q ss_pred             cccEEEEEECCCCCeEEEEeCCCcEEEeecCCCC---------------------------CCceeEEEeeCCcCCeeEE
Q 022716           20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHG---------------------------HGKVKDIELRGHADSVDQL   72 (293)
Q Consensus        20 ~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~---------------------------~~~~~~~~~~~h~~~i~~~   72 (293)
                      ...++|..|++|+..||.|-.|-.|++|.+.+..                           ........+.||.++|+..
T Consensus       378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~  457 (707)
T KOG0263|consen  378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGC  457 (707)
T ss_pred             CCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeee
Confidence            3689999999999999999999999999987411                           0011223478999999999


Q ss_pred             EEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeeeecCc-eEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccce
Q 022716           73 CWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGE-NINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYE  151 (293)
Q Consensus        73 ~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~  151 (293)
                      .|+|+ .++|+|+++|+++|+|.+++..+.-.+..+.. +..+.|+|.|-++++++.|++-++|......|.+       
T Consensus       458 sFsPd-~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlR-------  529 (707)
T KOG0263|consen  458 SFSPD-RRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLR-------  529 (707)
T ss_pred             eeccc-ccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchh-------
Confidence            99997 57899999999999999999988877775544 5568999999999999999999999977655544       


Q ss_pred             eeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEec
Q 022716          152 VNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASAS  231 (293)
Q Consensus       152 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s  231 (293)
                                   .+.++-+.+-|+.|||+..++++||.|.++++||..++..++.|.+|..+|.+++|||+|++||+|+
T Consensus       530 -------------ifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~  596 (707)
T KOG0263|consen  530 -------------IFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGD  596 (707)
T ss_pred             -------------hhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecc
Confidence                         2445667788999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEEEEcCCCCEEEEE-ecCCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeeec
Q 022716          232 EDLFIDISNVHTGRTVHQI-PCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN  292 (293)
Q Consensus       232 ~d~~i~iw~~~~~~~~~~~-~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~~  292 (293)
                      .|+.|++||+..++.+.++ .+.+.|.++.||.+|+.||+||.|.        .+|+|++++
T Consensus       597 ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~Dn--------sV~lWD~~~  650 (707)
T KOG0263|consen  597 EDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADN--------SVRLWDLTK  650 (707)
T ss_pred             cCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCC--------eEEEEEchh
Confidence            9999999999999887765 4567899999999999999999984        677887765

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4e-39  Score=256.67  Aligned_cols=266  Identities=26%  Similarity=0.414  Sum_probs=212.3

Q ss_pred             cceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (293)
Q Consensus        12 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i   91 (293)
                      +...+.||..+|.|++|+|+|.+||||+.|.++|+||++.+    ......++|..-|.+++|+|++ ..|+||+.||+|
T Consensus       107 CssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~Te----Tp~~t~KgH~~WVlcvawsPDg-k~iASG~~dg~I  181 (480)
T KOG0271|consen  107 CSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTE----TPLFTCKGHKNWVLCVAWSPDG-KKIASGSKDGSI  181 (480)
T ss_pred             eccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCC----CcceeecCCccEEEEEEECCCc-chhhccccCCeE
Confidence            34567899999999999999999999999999999999753    2334678999999999999985 689999999999


Q ss_pred             EEEeCCCCeeeee-ee-ecCceEEEEEc-----CCCCEEEEEeCCCeEEEEEccccceeeee-cccceeeeeEEecCCCE
Q 022716           92 RLWDARSGKCSQQ-AE-LSGENINITYK-----PDGTHIAVGNRDDELTILDVRKFKPIHRR-KFGYEVNEIAWNMTGEM  163 (293)
Q Consensus        92 ~vwd~~~~~~~~~-~~-~~~~~~~~~~~-----~~~~~l~~~~~d~~i~l~d~~~~~~~~~~-~~~~~~~~v~~~~~~~~  163 (293)
                      ++||.+++++... +. +...+++++|.     |..++|++++.||.+++||+.....+... .+-..+.++.|.-.+-+
T Consensus       182 ~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gli  261 (480)
T KOG0271|consen  182 RLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLI  261 (480)
T ss_pred             EEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceE
Confidence            9999998876543 33 33456677875     56789999999999999999877665443 45667888988643321


Q ss_pred             EE--------------------EecCCCCEEEEEE-----------CCCCCE-------------------------EEE
Q 022716          164 FF--------------------LTTGNAGCYCIAI-----------DPMGRY-------------------------FAV  187 (293)
Q Consensus       164 ~~--------------------~~~~~~~~~~~~~-----------~~~~~~-------------------------l~~  187 (293)
                      +.                    +..|...+..+++           +|.++.                         +++
T Consensus       262 ySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVS  341 (480)
T KOG0271|consen  262 YSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVS  341 (480)
T ss_pred             EecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEE
Confidence            11                    1122233445544           344444                         999


Q ss_pred             ecCCCcEEEEeCCC-CEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEe-cCCCcceeEECCCC
Q 022716          188 GSADSLVSLWDISE-MLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKY  265 (293)
Q Consensus       188 gs~d~~i~iwd~~~-~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~-~~~~i~~~~~sp~~  265 (293)
                      |++|.++.+|+... .+++..+++|..-|+.+.||||++++|++|=|..|++|+..+|+.+-.+. +-.+|-.++|+.|.
T Consensus       342 gsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDs  421 (480)
T KOG0271|consen  342 GSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADS  421 (480)
T ss_pred             ecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCc
Confidence            99999999999754 34677788999999999999999999999999999999999999887765 55678899999999


Q ss_pred             CeEEEEEcCCCCCCCCcceEEEEee
Q 022716          266 NLLAYAGDDKNKYQADEGVFRIYGF  290 (293)
Q Consensus       266 ~~la~~~~d~~~~~~~~~~~~~~~~  290 (293)
                      .+|++|+.|.        ++|+|.+
T Consensus       422 RLlVS~SkDs--------TLKvw~V  438 (480)
T KOG0271|consen  422 RLLVSGSKDS--------TLKVWDV  438 (480)
T ss_pred             cEEEEcCCCc--------eEEEEEe
Confidence            9999999995        5566655

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=4.7e-38  Score=241.06  Aligned_cols=250  Identities=21%  Similarity=0.326  Sum_probs=211.3

Q ss_pred             ceeecCccccEEEEEECCCC-CeEEEEeCCCcEEEeecCCCCCCc-eeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCe
Q 022716           13 SREYTGHKKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHGK-VKDIELRGHADSVDQLCWDPKHADLIATASGDKT   90 (293)
Q Consensus        13 ~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~v~iw~~~~~~~~~-~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~   90 (293)
                      ...+.+|++.|+.++..+.+ ..+++++.|.++.+|++....... .....+.||+..|..+..+++ +++.+|++.|++
T Consensus         8 ~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~d-g~~alS~swD~~   86 (315)
T KOG0279|consen    8 RGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSD-GNFALSASWDGT   86 (315)
T ss_pred             eeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccC-CceEEeccccce
Confidence            34678999999999999875 567899999999999997543221 223468899999999999986 578999999999


Q ss_pred             EEEEeCCCCeeeeeeeecC-ceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecC
Q 022716           91 VRLWDARSGKCSQQAELSG-ENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG  169 (293)
Q Consensus        91 i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  169 (293)
                      +++||+.+++..+.+..+. .+.+++|+||.+++++|+.|+++++|+...........                   .++
T Consensus        87 lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~-------------------~~~  147 (315)
T KOG0279|consen   87 LRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHE-------------------DSH  147 (315)
T ss_pred             EEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEec-------------------CCC
Confidence            9999999998777776554 57899999999999999999999999976533221110                   011


Q ss_pred             CCCEEEEEECCC--CCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEE
Q 022716          170 NAGCYCIAIDPM--GRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTV  247 (293)
Q Consensus       170 ~~~~~~~~~~~~--~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~  247 (293)
                      ..-+.|+.|+|.  ..++++++.|++|++||+++.+....+.+|...++.+++||||..+++|+.||.+.+||++.++.+
T Consensus       148 ~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~l  227 (315)
T KOG0279|consen  148 REWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNL  227 (315)
T ss_pred             cCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCcee
Confidence            456889999998  789999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeee
Q 022716          248 HQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE  291 (293)
Q Consensus       248 ~~~~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~  291 (293)
                      ..+.+...|++++|+|+--.|+.+-..         .+|||++|
T Consensus       228 ysl~a~~~v~sl~fspnrywL~~at~~---------sIkIwdl~  262 (315)
T KOG0279|consen  228 YSLEAFDIVNSLCFSPNRYWLCAATAT---------SIKIWDLE  262 (315)
T ss_pred             EeccCCCeEeeEEecCCceeEeeccCC---------ceEEEecc
Confidence            999999999999999988777777543         38888876

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=4.3e-37  Score=237.24  Aligned_cols=243  Identities=21%  Similarity=0.349  Sum_probs=207.5

Q ss_pred             cceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCC------------------------------------
Q 022716           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHG------------------------------------   55 (293)
Q Consensus        12 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~------------------------------------   55 (293)
                      ..+.+.||.++|.++.|++|.+.|+++|.||.+.|||.......                                    
T Consensus        47 ~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~l  126 (343)
T KOG0286|consen   47 TRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPL  126 (343)
T ss_pred             eEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEec
Confidence            45789999999999999999999999999999999996432100                                    


Q ss_pred             --------ceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeee-ecCceEEEEEcC-CCCEEEE
Q 022716           56 --------KVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAE-LSGENINITYKP-DGTHIAV  125 (293)
Q Consensus        56 --------~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~-~~~~l~~  125 (293)
                              ......+.+|.+.+.+..|.++  ..|+|++.|.+..+||+++++....+. +.+.+.++.++| +++.+++
T Consensus       127 s~~d~~g~~~v~r~l~gHtgylScC~f~dD--~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvS  204 (343)
T KOG0286|consen  127 STRDAEGNVRVSRELAGHTGYLSCCRFLDD--NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVS  204 (343)
T ss_pred             ccccccccceeeeeecCccceeEEEEEcCC--CceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEe
Confidence                    0112247899999999999763  468899999999999999999887776 446688999999 9999999


Q ss_pred             EeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEE
Q 022716          126 GNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCV  205 (293)
Q Consensus       126 ~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~  205 (293)
                      |+.|+.-++||+|.....+.                    +..++..|.++.|+|+|.-+++|++|++.++||++....+
T Consensus       205 g~cD~~aklWD~R~~~c~qt--------------------F~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~  264 (343)
T KOG0286|consen  205 GGCDKSAKLWDVRSGQCVQT--------------------FEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQEL  264 (343)
T ss_pred             cccccceeeeeccCcceeEe--------------------ecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEE
Confidence            99999999999998765553                    2356677889999999999999999999999999988777


Q ss_pred             EEeecc--CCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEE-ecCCCcceeEECCCCCeEEEEEcCCC
Q 022716          206 RTFTKL--EWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQI-PCRAAMNSVEWNPKYNLLAYAGDDKN  276 (293)
Q Consensus       206 ~~~~~~--~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~-~~~~~i~~~~~sp~~~~la~~~~d~~  276 (293)
                      ..+...  ..+|++++||..|++|.+|..|..+.+||.-.++.+..+ .|.++|.+|..+|||--+++||.|.+
T Consensus       265 a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~  338 (343)
T KOG0286|consen  265 AVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDST  338 (343)
T ss_pred             eeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHh
Confidence            766543  358999999999999999999999999999999887776 46778999999999999999999953

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=4.9e-37  Score=235.48  Aligned_cols=245  Identities=20%  Similarity=0.322  Sum_probs=200.4

Q ss_pred             cceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (293)
Q Consensus        12 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i   91 (293)
                      ..+.|+||...|..+..++||++.+++|.|+++|+||+...    .....+.+|...|.++++++++ ..++||+.|.+|
T Consensus        55 ~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g----~~t~~f~GH~~dVlsva~s~dn-~qivSGSrDkTi  129 (315)
T KOG0279|consen   55 PVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATG----ESTRRFVGHTKDVLSVAFSTDN-RQIVSGSRDKTI  129 (315)
T ss_pred             eeeeeeccceEecceEEccCCceEEeccccceEEEEEecCC----cEEEEEEecCCceEEEEecCCC-ceeecCCCccee
Confidence            45778999999999999999999999999999999999853    2345688999999999999975 578999999999


Q ss_pred             EEEeCCCCeeeeeee-e--cCceEEEEEcCC--CCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEE
Q 022716           92 RLWDARSGKCSQQAE-L--SGENINITYKPD--GTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFL  166 (293)
Q Consensus        92 ~vwd~~~~~~~~~~~-~--~~~~~~~~~~~~--~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  166 (293)
                      ++||+... |...+. .  .+-+.+++|+|+  ..+++.++.|+++++||+++.+..+.                    +
T Consensus       130 klwnt~g~-ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~--------------------~  188 (315)
T KOG0279|consen  130 KLWNTLGV-CKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTT--------------------F  188 (315)
T ss_pred             eeeeeccc-EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhc--------------------c
Confidence            99998764 444433 2  345778999998  67899999999999999998765432                    2


Q ss_pred             ecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCE
Q 022716          167 TTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRT  246 (293)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~  246 (293)
                      ..+.+.+..++++|||...++|+.||.+.+||++.++.++++ ++...|.+++|+|+.-+|+ +..+..|+|||..++..
T Consensus       189 ~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl-~a~~~v~sl~fspnrywL~-~at~~sIkIwdl~~~~~  266 (315)
T KOG0279|consen  189 IGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSL-EAFDIVNSLCFSPNRYWLC-AATATSIKIWDLESKAV  266 (315)
T ss_pred             ccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEec-cCCCeEeeEEecCCceeEe-eccCCceEEEeccchhh
Confidence            235667788999999999999999999999999999998877 5667999999999875554 44556699999999877


Q ss_pred             EEEEecC---------C-CcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeeec
Q 022716          247 VHQIPCR---------A-AMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN  292 (293)
Q Consensus       247 ~~~~~~~---------~-~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~~  292 (293)
                      +..+...         . ...+++|+++|..|..|-.|        +.+|+|++-+
T Consensus       267 v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td--------~~irv~qv~~  314 (315)
T KOG0279|consen  267 VEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTD--------NVIRVWQVAK  314 (315)
T ss_pred             hhhccccccccccccCCcEEEEEEEcCCCcEEEeeecC--------CcEEEEEeec
Confidence            6544211         1 13468999999999988776        5789998754

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=4.4e-37  Score=232.31  Aligned_cols=257  Identities=17%  Similarity=0.250  Sum_probs=211.5

Q ss_pred             CcCccccccc----ceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCC
Q 022716            3 ESSIPFKNLH----SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKH   78 (293)
Q Consensus         3 ~~~~~~~~~~----~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~   78 (293)
                      ++.|.||...    .+++.-..+.|..|...||++.||+|+. ..||+||+.+....  ....+.+|.+.|.++.|..+ 
T Consensus        19 DhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~--Pv~t~e~h~kNVtaVgF~~d-   94 (311)
T KOG0315|consen   19 DHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPN--PVATFEGHTKNVTAVGFQCD-   94 (311)
T ss_pred             cceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCC--ceeEEeccCCceEEEEEeec-
Confidence            3457777654    4555434578999999999999998875 78999999865422  33568899999999999876 


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEe
Q 022716           79 ADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWN  158 (293)
Q Consensus        79 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~  158 (293)
                      +..++|||+||+++|||++...+.+.+++..++.++..+|+...|++|..+|.|++||++.....++...          
T Consensus        95 grWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liP----------  164 (311)
T KOG0315|consen   95 GRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIP----------  164 (311)
T ss_pred             CeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCC----------
Confidence            5799999999999999999988888888889999999999999999999999999999987655443221          


Q ss_pred             cCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCC------CEEEEEeeccCCCeeEEEEccCCCEEEEecC
Q 022716          159 MTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISE------MLCVRTFTKLEWPVRTISFSHTGDYIASASE  232 (293)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~------~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~  232 (293)
                               .....+.++.+.|+|..++.+...|+.++|++..      .+++.+++.|..-+..+.+||++++||++|.
T Consensus       165 ---------e~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ss  235 (311)
T KOG0315|consen  165 ---------EDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSS  235 (311)
T ss_pred             ---------CCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecC
Confidence                     1234577899999999999999999999999754      3556678889999999999999999999999


Q ss_pred             CCcEEEEEcCCC-CEEEEEec-CCCcceeEECCCCCeEEEEEcCCCCCCCCc
Q 022716          233 DLFIDISNVHTG-RTVHQIPC-RAAMNSVEWNPKYNLLAYAGDDKNKYQADE  282 (293)
Q Consensus       233 d~~i~iw~~~~~-~~~~~~~~-~~~i~~~~~sp~~~~la~~~~d~~~~~~~~  282 (293)
                      |.+++||+..+. +.-+.+.. ...+..++||-++.||++|+.|...++|+.
T Consensus       236 dktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~  287 (311)
T KOG0315|consen  236 DKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDL  287 (311)
T ss_pred             CceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeeccc
Confidence            999999999887 33344443 457999999999999999999854444443

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=7.8e-36  Score=231.02  Aligned_cols=262  Identities=23%  Similarity=0.415  Sum_probs=211.3

Q ss_pred             eeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEE
Q 022716           14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL   93 (293)
Q Consensus        14 ~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~v   93 (293)
                      -.+.||++.|..+.|+|+|..|||||.|..|.+|++...+.   ....+.+|++.|..+.|+++ +..++|++.|.+++.
T Consensus        41 m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdce---N~~~lkgHsgAVM~l~~~~d-~s~i~S~gtDk~v~~  116 (338)
T KOG0265|consen   41 MLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCE---NFWVLKGHSGAVMELHGMRD-GSHILSCGTDKTVRG  116 (338)
T ss_pred             hhcCCCcceEEEEEECCCCCeEeecCCcceEEEEecccccc---ceeeeccccceeEeeeeccC-CCEEEEecCCceEEE
Confidence            34679999999999999999999999999999999874332   22356799999999999986 468899999999999


Q ss_pred             EeCCCCeeeeeeeecCceEEEEE-cCCCC-EEEEEeCCCeEEEEEccccceeeeecccceeeeeE---------------
Q 022716           94 WDARSGKCSQQAELSGENINITY-KPDGT-HIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIA---------------  156 (293)
Q Consensus        94 wd~~~~~~~~~~~~~~~~~~~~~-~~~~~-~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~---------------  156 (293)
                      ||.++|++.+....+...+...- ..-|. .+.+++.|+++++||+|++.+.+......++.++.               
T Consensus       117 wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn  196 (338)
T KOG0265|consen  117 WDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDN  196 (338)
T ss_pred             EecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccC
Confidence            99999999888777776654332 22233 45667779999999999877776664444555554               


Q ss_pred             ----EecC--CCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCC----EEEEEeeccC----CCeeEEEEcc
Q 022716          157 ----WNMT--GEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM----LCVRTFTKLE----WPVRTISFSH  222 (293)
Q Consensus       157 ----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~----~~~~~~~~~~----~~v~~l~~sp  222 (293)
                          |++.  .-...+..+.+.++.++.+|+|.++.+-+.|+++++||.+..    +++..+.+|.    .-...++|+|
T Consensus       197 ~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp  276 (338)
T KOG0265|consen  197 DIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSP  276 (338)
T ss_pred             ceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccC
Confidence                4442  123445666788999999999999999999999999998753    4566666542    2456688999


Q ss_pred             CCCEEEEecCCCcEEEEEcCCCCEEEEEec-CCCcceeEECCCCCeEEEEEcCCCCCC
Q 022716          223 TGDYIASASEDLFIDISNVHTGRTVHQIPC-RAAMNSVEWNPKYNLLAYAGDDKNKYQ  279 (293)
Q Consensus       223 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~-~~~i~~~~~sp~~~~la~~~~d~~~~~  279 (293)
                      +++.+..|+.|..+++||....+.+.+++. ...|+++.|+|...+|.+++.|+++|.
T Consensus       277 ~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l  334 (338)
T KOG0265|consen  277 NGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL  334 (338)
T ss_pred             CCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence            999999999999999999988888888875 457999999999999999999998874

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5e-36  Score=241.09  Aligned_cols=274  Identities=25%  Similarity=0.372  Sum_probs=217.6

Q ss_pred             CcccccccceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEE
Q 022716            5 SIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIAT   84 (293)
Q Consensus         5 ~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s   84 (293)
                      .+|+  ...+.+..|.+.|.-+.||++|++||||+.|.+..+|++..... ......+.+|..+|..+.|+|++ .+|++
T Consensus       211 qip~--qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~-~kl~~tlvgh~~~V~yi~wSPDd-ryLla  286 (519)
T KOG0293|consen  211 QIPS--QTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVH-FKLKKTLVGHSQPVSYIMWSPDD-RYLLA  286 (519)
T ss_pred             cCCc--hhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcc-eeeeeeeecccCceEEEEECCCC-CeEEe
Confidence            3555  34455789999999999999999999999999999999865332 22334678999999999999985 57889


Q ss_pred             EeCCCeEEEEeCCCCeeeeeeeec--CceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeee-cccceeeeeEEecCC
Q 022716           85 ASGDKTVRLWDARSGKCSQQAELS--GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRR-KFGYEVNEIAWNMTG  161 (293)
Q Consensus        85 ~~~d~~i~vwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~-~~~~~~~~v~~~~~~  161 (293)
                      |+.|..+++||+.+|.+...+...  ..+.+++|.|||..+++|+.|+++..||+.....-.=. .-...+.+++..++|
T Consensus       287 Cg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dg  366 (519)
T KOG0293|consen  287 CGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDG  366 (519)
T ss_pred             cCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCC
Confidence            999999999999999987776544  56789999999999999999999999998754311000 001346667777777


Q ss_pred             CEEEEec--------------------CCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCC--eeEEE
Q 022716          162 EMFFLTT--------------------GNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWP--VRTIS  219 (293)
Q Consensus       162 ~~~~~~~--------------------~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~--v~~l~  219 (293)
                      +.+....                    .+.++++..++.+++++++.-.+..+++||++....++.+.+|...  +-.-+
T Consensus       367 k~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSC  446 (519)
T KOG0293|consen  367 KYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSC  446 (519)
T ss_pred             cEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEec
Confidence            6655433                    2356889999999999999999999999999988888888888643  33334


Q ss_pred             Ec-cCCCEEEEecCCCcEEEEEcCCCCEEEEEec-CCCcceeEECCCC-CeEEEEEcCCCCCCCCcceEEEEee
Q 022716          220 FS-HTGDYIASASEDLFIDISNVHTGRTVHQIPC-RAAMNSVEWNPKY-NLLAYAGDDKNKYQADEGVFRIYGF  290 (293)
Q Consensus       220 ~s-p~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~-~~~i~~~~~sp~~-~~la~~~~d~~~~~~~~~~~~~~~~  290 (293)
                      |. .+..++|+||+|+.|+||+..+|+.+-.+.. ...||+|+|+|.. .+||+||+|        |++|||..
T Consensus       447 Fgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDD--------gtIRIWg~  512 (519)
T KOG0293|consen  447 FGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDD--------GTIRIWGP  512 (519)
T ss_pred             cCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCC--------CeEEEecC
Confidence            55 3558999999999999999999999988865 4569999999966 689999988        46666654

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=6.2e-36  Score=257.62  Aligned_cols=207  Identities=25%  Similarity=0.407  Sum_probs=184.8

Q ss_pred             cceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (293)
Q Consensus        12 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i   91 (293)
                      ..+.+.||.++|..+.|+|+.++|+++|.|++||+|.++...    ......||..+|.++.|+|.+ -+|+|||.|++.
T Consensus       443 ~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s----~~V~y~GH~~PVwdV~F~P~G-yYFatas~D~tA  517 (707)
T KOG0263|consen  443 TSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWS----CLVIYKGHLAPVWDVQFAPRG-YYFATASHDQTA  517 (707)
T ss_pred             eeEEeecCCCceeeeeecccccceeeccCCcceeeeecccce----eEEEecCCCcceeeEEecCCc-eEEEecCCCcee
Confidence            356689999999999999999999999999999999998642    334577999999999999974 689999999999


Q ss_pred             EEEeCCCCeeeeeeee-cCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCC
Q 022716           92 RLWDARSGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGN  170 (293)
Q Consensus        92 ~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  170 (293)
                      ++|........+.+.. -+.+-|+.|+|+..++++|+.|.++++||..++..++.                    +..|.
T Consensus       518 rLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRi--------------------F~GH~  577 (707)
T KOG0263|consen  518 RLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRI--------------------FTGHK  577 (707)
T ss_pred             eeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEE--------------------ecCCC
Confidence            9999887776666553 35567899999999999999999999999988765442                    34578


Q ss_pred             CCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCC
Q 022716          171 AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHT  243 (293)
Q Consensus       171 ~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~  243 (293)
                      +++.+++++|+|++|++|+.||.|.+||+..+..+..+.+|...|.++.||.+|..||+|+.|+.|++||+..
T Consensus       578 ~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~  650 (707)
T KOG0263|consen  578 GPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK  650 (707)
T ss_pred             CceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence            8999999999999999999999999999999999999999999999999999999999999999999999865

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=4.7e-37  Score=251.24  Aligned_cols=266  Identities=21%  Similarity=0.353  Sum_probs=219.9

Q ss_pred             ccceeecCccccEEEEEECC-CCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCC
Q 022716           11 LHSREYTGHKKKVHSVAWNC-TGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDK   89 (293)
Q Consensus        11 ~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~   89 (293)
                      ..+..+.||+..|+++.|.| .+.+|++|+.|+.|+||++...   ......+.+|+.+|.+++|+.++ ..++|+|.|+
T Consensus       205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~---~~~lrtf~gH~k~Vrd~~~s~~g-~~fLS~sfD~  280 (503)
T KOG0282|consen  205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDD---RRCLRTFKGHRKPVRDASFNNCG-TSFLSASFDR  280 (503)
T ss_pred             hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecC---cceehhhhcchhhhhhhhccccC-Ceeeeeecce
Confidence            45677899999999999999 8999999999999999999752   22234678999999999999875 4677999999


Q ss_pred             eEEEEeCCCCeeeeeeeecCceEEEEEcCCC-CEEEEEeCCCeEEEEEccccceeeeeccc-ceeeeeEEecCCCEEEEe
Q 022716           90 TVRLWDARSGKCSQQAELSGENINITYKPDG-THIAVGNRDDELTILDVRKFKPIHRRKFG-YEVNEIAWNMTGEMFFLT  167 (293)
Q Consensus        90 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~l~d~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~  167 (293)
                      .+++||+.+|++...+.....+.++.|.|++ +.+++|+.|+.|+.||+|+.+.+++.... ..+..+.|-+.+..++.+
T Consensus       281 ~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFiss  360 (503)
T KOG0282|consen  281 FLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISS  360 (503)
T ss_pred             eeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeee
Confidence            9999999999999999999999999999998 88999999999999999998877665432 345666666666665554


Q ss_pred             cCC----------------------CCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEE---EEEeeccC--CCeeEEEE
Q 022716          168 TGN----------------------AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLC---VRTFTKLE--WPVRTISF  220 (293)
Q Consensus       168 ~~~----------------------~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~---~~~~~~~~--~~v~~l~~  220 (293)
                      +.+                      ..+.|+..+|++++++.-+.|+.|.+|.+...-+   -+.+++|.  +--..+.|
T Consensus       361 SDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~f  440 (503)
T KOG0282|consen  361 SDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDF  440 (503)
T ss_pred             ccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEE
Confidence            443                      2355889999999999999999999998754322   23466665  34566899


Q ss_pred             ccCCCEEEEecCCCcEEEEEcCCCCEEEEEecC-CCcceeEECCCC-CeEEEEEcCCCCCCC
Q 022716          221 SHTGDYIASASEDLFIDISNVHTGRTVHQIPCR-AAMNSVEWNPKY-NLLAYAGDDKNKYQA  280 (293)
Q Consensus       221 sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~-~~i~~~~~sp~~-~~la~~~~d~~~~~~  280 (293)
                      ||||.+|++|+.||.+.+||.++.+.+..++.+ .++..+.|+|.. +.+|++|.|+.+++|
T Consensus       441 SpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiw  502 (503)
T KOG0282|consen  441 SPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIW  502 (503)
T ss_pred             cCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEec
Confidence            999999999999999999999999988888765 789999999965 789999998655554

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=4.2e-34  Score=236.23  Aligned_cols=260  Identities=22%  Similarity=0.334  Sum_probs=194.5

Q ss_pred             ecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEee---CCcCCeeEEEEcCCCCCEEEEEeCCCeEE
Q 022716           16 YTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELR---GHADSVDQLCWDPKHADLIATASGDKTVR   92 (293)
Q Consensus        16 ~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~---~h~~~i~~~~~~~~~~~~l~s~~~d~~i~   92 (293)
                      +-.|.+-|.|+.|+|||.+++|++.||++.+||=.+.+    ....+.   +|++.|++++|+|+. ..++|++.|.+++
T Consensus       186 ~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge----~vg~l~~~~aHkGsIfalsWsPDs-~~~~T~SaDkt~K  260 (603)
T KOG0318|consen  186 FREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGE----KVGELEDSDAHKGSIFALSWSPDS-TQFLTVSADKTIK  260 (603)
T ss_pred             ccccccceeeEEECCCCCeEEEecCCccEEEEcCCCcc----EEEEecCCCCccccEEEEEECCCC-ceEEEecCCceEE
Confidence            45688999999999999999999999999999854321    222333   899999999999974 6788999999999


Q ss_pred             EEeCCCCeeeeeeeecC--------------------------------------------ceEEEEEcCCCCEEEEEeC
Q 022716           93 LWDARSGKCSQQAELSG--------------------------------------------ENINITYKPDGTHIAVGNR  128 (293)
Q Consensus        93 vwd~~~~~~~~~~~~~~--------------------------------------------~~~~~~~~~~~~~l~~~~~  128 (293)
                      |||+.+.++...+....                                            .+.++..+|+++++++|+.
T Consensus       261 IWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~Sgsy  340 (603)
T KOG0318|consen  261 IWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSY  340 (603)
T ss_pred             EEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeecc
Confidence            99998776544322111                                            1345778899999999999


Q ss_pred             CCeEEEEEccccceeeee--ccc-----------ceeeeeEEec-------------------------------CCCEE
Q 022716          129 DDELTILDVRKFKPIHRR--KFG-----------YEVNEIAWNM-------------------------------TGEMF  164 (293)
Q Consensus       129 d~~i~l~d~~~~~~~~~~--~~~-----------~~~~~v~~~~-------------------------------~~~~~  164 (293)
                      ||.|.-||..+...-+..  .+.           .++..+.|+.                               ++...
T Consensus       341 DG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~a  420 (603)
T KOG0318|consen  341 DGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTA  420 (603)
T ss_pred             CceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEE
Confidence            999999998654432211  011           1122222211                               11111


Q ss_pred             EEecCC-----------------CCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEE--EEeeccCCCeeEEEEccCCC
Q 022716          165 FLTTGN-----------------AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCV--RTFTKLEWPVRTISFSHTGD  225 (293)
Q Consensus       165 ~~~~~~-----------------~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~--~~~~~~~~~v~~l~~sp~~~  225 (293)
                      .+++..                 -...+++++|++.++++|+.|++|++|.+...+..  .....|..+|+.++||||+.
T Consensus       421 vv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~  500 (603)
T KOG0318|consen  421 VVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGA  500 (603)
T ss_pred             EEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCc
Confidence            111111                 12357899999999999999999999999765432  24567999999999999999


Q ss_pred             EEEEecCCCcEEEEEcCCCCEEE-EEe-cCCCcceeEECCCCCeEEEEEcCCCCCCC
Q 022716          226 YIASASEDLFIDISNVHTGRTVH-QIP-CRAAMNSVEWNPKYNLLAYAGDDKNKYQA  280 (293)
Q Consensus       226 ~l~s~s~d~~i~iw~~~~~~~~~-~~~-~~~~i~~~~~sp~~~~la~~~~d~~~~~~  280 (293)
                      |||+|...+.+.+||+++.+... .+. |..+|++++|+|+..++|+||.|.++.+|
T Consensus       501 yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiy  557 (603)
T KOG0318|consen  501 YLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIY  557 (603)
T ss_pred             EEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEE
Confidence            99999999999999999987632 333 56789999999999999999999766543

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=1.6e-34  Score=235.84  Aligned_cols=251  Identities=29%  Similarity=0.476  Sum_probs=218.9

Q ss_pred             ccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCe
Q 022716           21 KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGK  100 (293)
Q Consensus        21 ~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~  100 (293)
                      ..|++|+|+.+|..||+|+.||.+|+|+....     ....+..|+++|.++.|+.+ +.+|++++-|+++.+||..++.
T Consensus       236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~-----l~~tl~~HkgPI~slKWnk~-G~yilS~~vD~ttilwd~~~g~  309 (524)
T KOG0273|consen  236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDGN-----LISTLGQHKGPIFSLKWNKK-GTYILSGGVDGTTILWDAHTGT  309 (524)
T ss_pred             CCcceEEecCCCCeEEEeecCcEEEEEecCch-----hhhhhhccCCceEEEEEcCC-CCEEEeccCCccEEEEeccCce
Confidence            57999999999999999999999999997632     22357789999999999986 4789999999999999999999


Q ss_pred             eeeeeeecCce-EEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeec-ccceeeeeEEecCCCEEEEecCC--------
Q 022716          101 CSQQAELSGEN-INITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTGN--------  170 (293)
Q Consensus       101 ~~~~~~~~~~~-~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~--------  170 (293)
                      ..+.++++..+ ..+.|-.+ ..+++.+.|+.|+++.+....|..... +..+|..+.|+|.+.++.-.+.+        
T Consensus       310 ~~q~f~~~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~  388 (524)
T KOG0273|consen  310 VKQQFEFHSAPALDVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSM  388 (524)
T ss_pred             EEEeeeeccCCccceEEecC-ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeec
Confidence            88888877766 66777544 578899999999999998888877654 66789999999998877654432        


Q ss_pred             -------------CCEEEEEECCCC---------CEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEE
Q 022716          171 -------------AGCYCIAIDPMG---------RYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIA  228 (293)
Q Consensus       171 -------------~~~~~~~~~~~~---------~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~  228 (293)
                                   ..++.+.++|.|         ..+++++.|++|++||+..+.++.+|..|..||.+|+|+|+|+|+|
T Consensus       389 ~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylA  468 (524)
T KOG0273|consen  389 GQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLA  468 (524)
T ss_pred             CCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEE
Confidence                         347788888854         4699999999999999999999999999999999999999999999


Q ss_pred             EecCCCcEEEEEcCCCCEEEEEecCCCcceeEECCCCCeEEEEEcCCCCC
Q 022716          229 SASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKY  278 (293)
Q Consensus       229 s~s~d~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~d~~~~  278 (293)
                      +|+.|+.|.||++++++..+.+.....|..|.|+.+|++|..+-.|+.+.
T Consensus       469 sGs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd~~vc  518 (524)
T KOG0273|consen  469 SGSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGACASDGSVC  518 (524)
T ss_pred             ecCCCCeeEeccccchheeEeecCCCeEEEEEEcCCCCEEEEEecCCCce
Confidence            99999999999999999999999888999999999999999888876443

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=9.6e-37  Score=245.68  Aligned_cols=205  Identities=24%  Similarity=0.412  Sum_probs=182.4

Q ss_pred             ccceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCe
Q 022716           11 LHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKT   90 (293)
Q Consensus        11 ~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~   90 (293)
                      .+.+.+.||...|..++|+|+|++|+|++.|.+-++||+..+.    ..+...||...|.+++|+|++ .+++|||.|..
T Consensus       252 ~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~----ElL~QEGHs~~v~~iaf~~DG-SL~~tGGlD~~  326 (459)
T KOG0272|consen  252 TPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKS----ELLLQEGHSKGVFSIAFQPDG-SLAATGGLDSL  326 (459)
T ss_pred             cchhhhhcchhhheeeeecCCCceeeecccccchhhcccccch----hhHhhcccccccceeEecCCC-ceeeccCccch
Confidence            3567899999999999999999999999999999999998542    223467999999999999975 69999999999


Q ss_pred             EEEEeCCCCeeeeeeeec-CceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecC
Q 022716           91 VRLWDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG  169 (293)
Q Consensus        91 i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  169 (293)
                      -+|||+++++++..+..+ .++..+.|+|+|-.+++|+.|+++++||+|...++.                    .+..|
T Consensus       327 ~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly--------------------~ipAH  386 (459)
T KOG0272|consen  327 GRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELY--------------------TIPAH  386 (459)
T ss_pred             hheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccce--------------------ecccc
Confidence            999999999998877654 567799999999999999999999999998765433                    33445


Q ss_pred             CCCEEEEEECC-CCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEE
Q 022716          170 NAGCYCIAIDP-MGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISN  240 (293)
Q Consensus       170 ~~~~~~~~~~~-~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~  240 (293)
                      ..-++.+.+.| .|.+|++++.|++++||..+++.+++++.+|+..|-+++++|++++++|++.|.++++|.
T Consensus       387 ~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  387 SNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             cchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence            55677788998 689999999999999999999999999999999999999999999999999999999995

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=1.8e-34  Score=235.44  Aligned_cols=270  Identities=23%  Similarity=0.348  Sum_probs=219.3

Q ss_pred             CccccEEEEEECCCCC-eEEEEeCCCcEEEeecCCCCCCceeEEEe------eC----CcCCeeEEEEcCCCCCEEEEEe
Q 022716           18 GHKKKVHSVAWNCTGT-KLASGSVDQTARVWHIEPHGHGKVKDIEL------RG----HADSVDQLCWDPKHADLIATAS   86 (293)
Q Consensus        18 ~h~~~v~~l~~s~~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~------~~----h~~~i~~~~~~~~~~~~l~s~~   86 (293)
                      .|+.+|.+++|+|... .+++|+.|-+.++|++..+.........+      .+    .+..|++++|+.+ +.+|++|+
T Consensus       176 ~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~-G~~LatG~  254 (524)
T KOG0273|consen  176 RHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNND-GTLLATGS  254 (524)
T ss_pred             cCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCC-CCeEEEee
Confidence            4999999999999877 88999999999999987522111111111      11    2356999999976 57999999


Q ss_pred             CCCeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeeccccee-eeeEEecC-----
Q 022716           87 GDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEV-NEIAWNMT-----  160 (293)
Q Consensus        87 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~-~~v~~~~~-----  160 (293)
                      +||.+++|+...+.....-.+.+++.++.|..+|.++++++-|+++.+||..+....+...+.... -+|.|-..     
T Consensus       255 ~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~t  334 (524)
T KOG0273|consen  255 EDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFAT  334 (524)
T ss_pred             cCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEee
Confidence            999999999866544444457788999999999999999999999999999777766665544333 44555322     


Q ss_pred             ---------------CCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCC-
Q 022716          161 ---------------GEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTG-  224 (293)
Q Consensus       161 ---------------~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~-  224 (293)
                                     .+...+..|...+.++.|+|.+.+|+++|.|++++||...+....+.+..|...|..+.|+|+| 
T Consensus       335 s~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~  414 (524)
T KOG0273|consen  335 SSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGP  414 (524)
T ss_pred             cCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCC
Confidence                           2223344577889999999999999999999999999999988889999999999999999976 


Q ss_pred             --------CEEEEecCCCcEEEEEcCCCCEEEEE-ecCCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEE
Q 022716          225 --------DYIASASEDLFIDISNVHTGRTVHQI-PCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIY  288 (293)
Q Consensus       225 --------~~l~s~s~d~~i~iw~~~~~~~~~~~-~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~  288 (293)
                              ..+++++.|++|++||+..+.+++.+ .++.+|-+|+|+|+|.++|+|+.|+-+.+|+--.-++|
T Consensus       415 v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~  487 (524)
T KOG0273|consen  415 VTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLV  487 (524)
T ss_pred             ccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchhee
Confidence                    47899999999999999999999987 78889999999999999999999998888776544444

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=100.00  E-value=3.4e-33  Score=213.28  Aligned_cols=252  Identities=20%  Similarity=0.290  Sum_probs=208.8

Q ss_pred             eecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEE
Q 022716           15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLW   94 (293)
Q Consensus        15 ~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vw   94 (293)
                      .++||..+++.+.|+.+|++|.|++.|.+.-+|--...    ...-.+.||.+.|+++...-+ ...++||+.|.++++|
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nG----erlGty~GHtGavW~~Did~~-s~~liTGSAD~t~kLW   79 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNG----ERLGTYDGHTGAVWCCDIDWD-SKHLITGSADQTAKLW   79 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCC----ceeeeecCCCceEEEEEecCC-cceeeeccccceeEEE
Confidence            46799999999999999999999999999999954321    123367899999999998764 5789999999999999


Q ss_pred             eCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeC-----CCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecC
Q 022716           95 DARSGKCSQQAELSGENINITYKPDGTHIAVGNR-----DDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG  169 (293)
Q Consensus        95 d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  169 (293)
                      |+.+|+++..++....+..+.|+++|++++..+.     .+.|.++|++......             ....+.+.+.+.
T Consensus        80 Dv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~-------------~s~ep~~kI~t~  146 (327)
T KOG0643|consen   80 DVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDI-------------DSEEPYLKIPTP  146 (327)
T ss_pred             EcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhh-------------cccCceEEecCC
Confidence            9999999999999999999999999998887763     4578889987543211             112234556667


Q ss_pred             CCCEEEEEECCCCCEEEEecCCCcEEEEeCCCC-EEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEE
Q 022716          170 NAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM-LCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVH  248 (293)
Q Consensus       170 ~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~-~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~  248 (293)
                      ++.++.+-|.|.+.++++|.+||.|.+||++++ +.+.+...|...|+.++++|+..+++|+|.|.+.++||+.+...++
T Consensus       147 ~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~K  226 (327)
T KOG0643|consen  147 DSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLK  226 (327)
T ss_pred             ccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEE
Confidence            788889999999999999999999999999997 5556667888999999999999999999999999999998765554


Q ss_pred             EEecC--------------------------------------------------------CCcceeEECCCCCeEEEEE
Q 022716          249 QIPCR--------------------------------------------------------AAMNSVEWNPKYNLLAYAG  272 (293)
Q Consensus       249 ~~~~~--------------------------------------------------------~~i~~~~~sp~~~~la~~~  272 (293)
                      ++.+.                                                        +|||+|+|||+|+-+++||
T Consensus       227 ty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGG  306 (327)
T KOG0643|consen  227 TYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGG  306 (327)
T ss_pred             EeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCC
Confidence            33211                                                        5788999999999999999


Q ss_pred             cCCCCCCCCcceEEEEeeec
Q 022716          273 DDKNKYQADEGVFRIYGFEN  292 (293)
Q Consensus       273 ~d~~~~~~~~~~~~~~~~~~  292 (293)
                      .|        |.+||..||.
T Consensus       307 ED--------G~VR~h~Fd~  318 (327)
T KOG0643|consen  307 ED--------GYVRLHHFDS  318 (327)
T ss_pred             CC--------ceEEEEEecc
Confidence            77        5778887764

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=1.1e-33  Score=247.07  Aligned_cols=252  Identities=25%  Similarity=0.457  Sum_probs=209.0

Q ss_pred             cceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (293)
Q Consensus        12 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i   91 (293)
                      ..+.+.+|...|.+++|+|+|+++++|+.|+++||||+...   ......+.+|...|++++|+|.+ ++++||+.|++|
T Consensus       195 ~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~---~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tv  270 (456)
T KOG0266|consen  195 LLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDD---GRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTV  270 (456)
T ss_pred             hhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCC---CeEEEEecCCCCceEEEEecCCC-CEEEEecCCCcE
Confidence            45666899999999999999999999999999999999432   23345678999999999999987 899999999999


Q ss_pred             EEEeCCCCeeeeeeeecC-ceEEEEEcCCCCEEEEEeCCCeEEEEEcccccee--eeecccceeeeeEEecCCCEEEEec
Q 022716           92 RLWDARSGKCSQQAELSG-ENINITYKPDGTHIAVGNRDDELTILDVRKFKPI--HRRKFGYEVNEIAWNMTGEMFFLTT  168 (293)
Q Consensus        92 ~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~  168 (293)
                      ++||++++++...+..+. .+.+++|++++.++++++.|+.+++||+.+....  ....-                 ...
T Consensus       271 riWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~-----------------~~~  333 (456)
T KOG0266|consen  271 RIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSG-----------------AEN  333 (456)
T ss_pred             EEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccC-----------------CCC
Confidence            999999999988887554 6677999999999999999999999999886622  21110                 001


Q ss_pred             CCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCC---eeEEEEccCCCEEEEecCCCcEEEEEcCCCC
Q 022716          169 GNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWP---VRTISFSHTGDYIASASEDLFIDISNVHTGR  245 (293)
Q Consensus       169 ~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~---v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~  245 (293)
                      .. .+.++.|+|++.++++++.|+.+++||+..+..+..+.+|...   +.+..+++.++++++|+.|+.|++|+..++.
T Consensus       334 ~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~  412 (456)
T KOG0266|consen  334 SA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGG  412 (456)
T ss_pred             CC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccc
Confidence            12 5788999999999999999999999999999989898888764   3344557889999999999999999999977


Q ss_pred             EEEEEecC--CCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeee
Q 022716          246 TVHQIPCR--AAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE  291 (293)
Q Consensus       246 ~~~~~~~~--~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~  291 (293)
                      .+..+..+  ..+..+.|+|..+++++++.+.+      ..+++|..+
T Consensus       413 ~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d------~~~~~w~~~  454 (456)
T KOG0266|consen  413 ILQRLEGHSKAAVSDLSSHPTENLIASSSFEGD------GLIRLWKYD  454 (456)
T ss_pred             hhhhhcCCCCCceeccccCCCcCeeeecCcCCC------ceEEEecCC
Confidence            76666544  66889999999999999995432      446777654

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.4e-33  Score=241.90  Aligned_cols=248  Identities=21%  Similarity=0.360  Sum_probs=204.5

Q ss_pred             cCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeC
Q 022716           17 TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDA   96 (293)
Q Consensus        17 ~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~   96 (293)
                      .||...+.+++++|||.++|||+.||+|||||..+    ......+..|+..|+.+.|+.. ++.++|++-||+|+.||+
T Consensus       347 QgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~S----gfC~vTFteHts~Vt~v~f~~~-g~~llssSLDGtVRAwDl  421 (893)
T KOG0291|consen  347 QGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQS----GFCFVTFTEHTSGVTAVQFTAR-GNVLLSSSLDGTVRAWDL  421 (893)
T ss_pred             cccccceeeEEECCCCcEEEeccCCCcEEEEeccC----ceEEEEeccCCCceEEEEEEec-CCEEEEeecCCeEEeeee
Confidence            48999999999999999999999999999999864    2345678899999999999876 568899999999999999


Q ss_pred             CCCeeeeeeeecCc--eEEEEEcCCCCEEEEEeCCC-eEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCE
Q 022716           97 RSGKCSQQAELSGE--NINITYKPDGTHIAVGNRDD-ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGC  173 (293)
Q Consensus        97 ~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d~-~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  173 (293)
                      ...+.-+++..+.+  ..+++..|.|..+.+|+.|. .|.+|++++++.+.                    .+..|++++
T Consensus       422 kRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllD--------------------iLsGHEgPV  481 (893)
T KOG0291|consen  422 KRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLD--------------------ILSGHEGPV  481 (893)
T ss_pred             cccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeee--------------------hhcCCCCcc
Confidence            99887777665544  45788899999999999886 79999998876543                    355788899


Q ss_pred             EEEEECCCCCEEEEecCCCcEEEEeCCCC-EEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEec
Q 022716          174 YCIAIDPMGRYFAVGSADSLVSLWDISEM-LCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPC  252 (293)
Q Consensus       174 ~~~~~~~~~~~l~~gs~d~~i~iwd~~~~-~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~  252 (293)
                      .+++|+|++..|++||.|++|++||+-.. ..+.++ .+...+.+++|.|+|+.||.+..||.|.+||.+.......+..
T Consensus       482 s~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl-~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~Idg  560 (893)
T KOG0291|consen  482 SGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETL-EIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDG  560 (893)
T ss_pred             eeeEEccccCeEEeccccceEEEEEeeccCceeeeE-eeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccc
Confidence            99999999999999999999999998443 234444 4556899999999999999999999999999987655422211


Q ss_pred             ---------------------CCCcceeEECCCCCeEEEEEcCCCCCC--CCcce-EEEEee
Q 022716          253 ---------------------RAAMNSVEWNPKYNLLAYAGDDKNKYQ--ADEGV-FRIYGF  290 (293)
Q Consensus       253 ---------------------~~~i~~~~~sp~~~~la~~~~d~~~~~--~~~~~-~~~~~~  290 (293)
                                           ....+.|.+|+||..|.+||..+++++  ..+++ +|.|++
T Consensus       561 rkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfqi  622 (893)
T KOG0291|consen  561 RKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKFQI  622 (893)
T ss_pred             hhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeEEe
Confidence                                 135678999999999999999998887  33433 477765

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=3.4e-32  Score=223.52  Aligned_cols=260  Identities=28%  Similarity=0.460  Sum_probs=214.5

Q ss_pred             eeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEE
Q 022716           14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL   93 (293)
Q Consensus        14 ~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~v   93 (293)
                      +.+.+|.++|.+++|+|+++.|++++.||.+++|++....    ....+..|...+..+.|.|++ +.+++++.|+.+++
T Consensus         3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~----~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i   77 (289)
T cd00200           3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE----LLRTLKGHTGPVRDVAASADG-TYLASGSSDKTIRL   77 (289)
T ss_pred             hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCC----cEEEEecCCcceeEEEECCCC-CEEEEEcCCCeEEE
Confidence            4577999999999999999999999999999999987532    223466888889999999874 68889999999999


Q ss_pred             EeCCCCeeeeeeeec-CceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeec-ccceeeeeEEecCCCEEEEec---
Q 022716           94 WDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTT---  168 (293)
Q Consensus        94 wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~---  168 (293)
                      ||+..++....+..+ ..+.++.|.|+++.+++++.++.+.+||+++.+...... +...+..+.|++.+..+....   
T Consensus        78 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~  157 (289)
T cd00200          78 WDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDG  157 (289)
T ss_pred             EEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCC
Confidence            999887655555433 467789999998888888889999999998766655544 445678888888655544433   


Q ss_pred             ------------------CCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEe
Q 022716          169 ------------------GNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASA  230 (293)
Q Consensus       169 ------------------~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~  230 (293)
                                        +...+.+++++|+++.+++++.|+.|++||++.+..+..+..|..++.+++|+|++.+++++
T Consensus       158 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  237 (289)
T cd00200         158 TIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASG  237 (289)
T ss_pred             cEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEE
Confidence                              12356789999999999999999999999999888888887888899999999999999999


Q ss_pred             cCCCcEEEEEcCCCCEEEEEe-cCCCcceeEECCCCCeEEEEEcCCCCC
Q 022716          231 SEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNKY  278 (293)
Q Consensus       231 s~d~~i~iw~~~~~~~~~~~~-~~~~i~~~~~sp~~~~la~~~~d~~~~  278 (293)
                      +.|+.+++|+..+++.+..+. +...+.+++|+|++++|++++.|+.+.
T Consensus       238 ~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~  286 (289)
T cd00200         238 SEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIR  286 (289)
T ss_pred             cCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEE
Confidence            999999999999888776665 345799999999999999999885333

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=2.7e-32  Score=208.73  Aligned_cols=255  Identities=27%  Similarity=0.455  Sum_probs=198.9

Q ss_pred             cceeecCccccEEEEEECCC-CCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCe
Q 022716           12 HSREYTGHKKKVHSVAWNCT-GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKT   90 (293)
Q Consensus        12 ~~~~~~~h~~~v~~l~~s~~-~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~   90 (293)
                      ..+.+.||++.+..++|+|- |..|||+|.|+.||+|++.....-.....--.+|+..|..++|+|.+ ++|++|+.|.+
T Consensus         6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g-~~La~aSFD~t   84 (312)
T KOG0645|consen    6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHG-RYLASASFDAT   84 (312)
T ss_pred             eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCC-cEEEEeeccce
Confidence            45678899999999999998 88999999999999999874221111112234799999999999975 69999999999


Q ss_pred             EEEEeCCCC--eeeeeeee-cCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEe
Q 022716           91 VRLWDARSG--KCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLT  167 (293)
Q Consensus        91 i~vwd~~~~--~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  167 (293)
                      +.||.-..+  +++..++. ..++.+++|+++|.+|++++.|..+-+|.+......       ++          ...+.
T Consensus        85 ~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEf-------ec----------~aVL~  147 (312)
T KOG0645|consen   85 VVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEF-------EC----------IAVLQ  147 (312)
T ss_pred             EEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcE-------EE----------Eeeec
Confidence            999976555  45666664 456778999999999999999999999987632211       11          01233


Q ss_pred             cCCCCEEEEEECCCCCEEEEecCCCcEEEEeCC---CCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCC-
Q 022716          168 TGNAGCYCIAIDPMGRYFAVGSADSLVSLWDIS---EMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHT-  243 (293)
Q Consensus       168 ~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~---~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~-  243 (293)
                      .|...+.-+.|||...+|++++-|++|++|+-.   ...+..++.+|...|.+++|+|.|..|+++++|++++||-..+ 
T Consensus       148 ~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~  227 (312)
T KOG0645|consen  148 EHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD  227 (312)
T ss_pred             cccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC
Confidence            445556677888999999999999999999765   4678899999999999999999999999999999999997211 


Q ss_pred             ------CC------------------EEEEE-------------------ecCCCcceeEECCC-CCeEEEEEcCCCCCC
Q 022716          244 ------GR------------------TVHQI-------------------PCRAAMNSVEWNPK-YNLLAYAGDDKNKYQ  279 (293)
Q Consensus       244 ------~~------------------~~~~~-------------------~~~~~i~~~~~sp~-~~~la~~~~d~~~~~  279 (293)
                            +.                  .+..+                   .+...||+|.|+|. .++|+++|+|     
T Consensus       228 ~~~~~sr~~Y~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DD-----  302 (312)
T KOG0645|consen  228 LSGMHSRALYDVPWDNGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDD-----  302 (312)
T ss_pred             cchhcccceEeeeecccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCC-----
Confidence                  11                  01111                   12246899999996 6899999987     


Q ss_pred             CCcceEEEEeeec
Q 022716          280 ADEGVFRIYGFEN  292 (293)
Q Consensus       280 ~~~~~~~~~~~~~  292 (293)
                         |.+|+|.++.
T Consensus       303 ---G~v~~W~l~~  312 (312)
T KOG0645|consen  303 ---GIVNFWELEI  312 (312)
T ss_pred             ---ceEEEEEecC
Confidence               6889998874

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.1e-34  Score=228.31  Aligned_cols=256  Identities=23%  Similarity=0.388  Sum_probs=212.5

Q ss_pred             cceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (293)
Q Consensus        12 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i   91 (293)
                      ..+.+.||.+.|.+++|+..|++||+++.|=.+++||++.. ..+.  ..+.+|.-.|.++.|-|.+ +.++|++.|.+|
T Consensus       142 ~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~-~~c~--ks~~gh~h~vS~V~f~P~g-d~ilS~srD~ti  217 (406)
T KOG0295|consen  142 LERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTF-FRCI--KSLIGHEHGVSSVFFLPLG-DHILSCSRDNTI  217 (406)
T ss_pred             hhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHH-HHHH--HHhcCcccceeeEEEEecC-Ceeeecccccce
Confidence            35667899999999999999999999999999999998742 1111  2356899999999999985 789999999999


Q ss_pred             EEEeCCCCeeeeeeeecCc-eEEEEEcCCCCEEEEEeCCCeEEEEEccccceeee-ecccceeeeeEEecCCCEEEEecC
Q 022716           92 RLWDARSGKCSQQAELSGE-NINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR-RKFGYEVNEIAWNMTGEMFFLTTG  169 (293)
Q Consensus        92 ~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~  169 (293)
                      +.|++.++-|+..+..+.. +..++...||..+++++.|.++++|-+.+...... +.+.+.+..++|.|....--+...
T Consensus       218 k~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~a  297 (406)
T KOG0295|consen  218 KAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEA  297 (406)
T ss_pred             eEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhc
Confidence            9999999999998875544 55678889999999999999999999988754433 346778888999776432111110


Q ss_pred             CCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEE
Q 022716          170 NAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQ  249 (293)
Q Consensus       170 ~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~  249 (293)
                      .+      -...+.++.+++.|++|++||+.++.++.++.+|.+.|..++|+|.|+||+++.+|+++++||++.+++.+.
T Consensus       298 t~------~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~  371 (406)
T KOG0295|consen  298 TG------STNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKT  371 (406)
T ss_pred             cC------CCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeec
Confidence            00      001457899999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             EecCC-CcceeEECCCCCeEEEEEcCCCC
Q 022716          250 IPCRA-AMNSVEWNPKYNLLAYAGDDKNK  277 (293)
Q Consensus       250 ~~~~~-~i~~~~~sp~~~~la~~~~d~~~  277 (293)
                      +..+. =+++++|+.+-.++++|+-|...
T Consensus       372 ~~ah~hfvt~lDfh~~~p~VvTGsVdqt~  400 (406)
T KOG0295|consen  372 LEAHEHFVTSLDFHKTAPYVVTGSVDQTV  400 (406)
T ss_pred             cCCCcceeEEEecCCCCceEEecccccee
Confidence            76544 47899999999999999988633

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=3.6e-32  Score=253.61  Aligned_cols=265  Identities=17%  Similarity=0.254  Sum_probs=204.0

Q ss_pred             ecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCC----CceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716           16 YTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGH----GKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (293)
Q Consensus        16 ~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~----~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i   91 (293)
                      +..|...|.+++|+|+|++||||+.|++|+||++.....    .......+ .+...+.+++|++.....|++++.|+.|
T Consensus       479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~~las~~~Dg~v  557 (793)
T PLN00181        479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL-ASRSKLSGICWNSYIKSQVASSNFEGVV  557 (793)
T ss_pred             ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEe-cccCceeeEEeccCCCCEEEEEeCCCeE
Confidence            446899999999999999999999999999999753110    00111223 2346789999988766789999999999


Q ss_pred             EEEeCCCCeeeeeee-ecCceEEEEEcC-CCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEec-CCCEEE---
Q 022716           92 RLWDARSGKCSQQAE-LSGENINITYKP-DGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNM-TGEMFF---  165 (293)
Q Consensus        92 ~vwd~~~~~~~~~~~-~~~~~~~~~~~~-~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~---  165 (293)
                      ++||+.+++....+. +...+.+++|+| ++.+|++|+.|+++++||+++............+..+.|.+ .+..+.   
T Consensus       558 ~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs  637 (793)
T PLN00181        558 QVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGS  637 (793)
T ss_pred             EEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEe
Confidence            999999887766664 445678999996 78899999999999999998877665554444555566643 232222   


Q ss_pred             -------------------EecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCC------CEEEEEeeccCCCeeEEEE
Q 022716          166 -------------------LTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISE------MLCVRTFTKLEWPVRTISF  220 (293)
Q Consensus       166 -------------------~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~------~~~~~~~~~~~~~v~~l~~  220 (293)
                                         +..+...+.++.|. ++.++++++.|++|++||+..      ...+.++.+|...+..++|
T Consensus       638 ~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~  716 (793)
T PLN00181        638 ADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGL  716 (793)
T ss_pred             CCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEE
Confidence                               22344567788886 688999999999999999874      3567788899999999999


Q ss_pred             ccCCCEEEEecCCCcEEEEEcCCCCEEEEE--------------ecCCCcceeEECCCCCeEEEEEcCCCCCCCCcceEE
Q 022716          221 SHTGDYIASASEDLFIDISNVHTGRTVHQI--------------PCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFR  286 (293)
Q Consensus       221 sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~--------------~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~  286 (293)
                      +|++++|++|+.|+.|++|+......+..+              .+...|++++|+|++++|++|+.|        |.+|
T Consensus       717 s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~d--------G~I~  788 (793)
T PLN00181        717 SVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANST--------GNIK  788 (793)
T ss_pred             cCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCC--------CcEE
Confidence            999999999999999999998765433211              112358999999999999999987        4666


Q ss_pred             EEee
Q 022716          287 IYGF  290 (293)
Q Consensus       287 ~~~~  290 (293)
                      ||++
T Consensus       789 i~~~  792 (793)
T PLN00181        789 ILEM  792 (793)
T ss_pred             EEec
Confidence            7764

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=8e-33  Score=237.31  Aligned_cols=239  Identities=24%  Similarity=0.413  Sum_probs=206.9

Q ss_pred             cccEEEEEECCCCCeEEEEeCC-CcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCC
Q 022716           20 KKKVHSVAWNCTGTKLASGSVD-QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS   98 (293)
Q Consensus        20 ~~~v~~l~~s~~~~~l~s~~~d-g~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~   98 (293)
                      ..+|..++|+..|++||.|+.. |++-||+..+    .....+..+|...+++++++|++ .+++||+.||.|+|||.++
T Consensus       307 ~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqs----EsYVlKQQgH~~~i~~l~YSpDg-q~iaTG~eDgKVKvWn~~S  381 (893)
T KOG0291|consen  307 DQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQS----ESYVLKQQGHSDRITSLAYSPDG-QLIATGAEDGKVKVWNTQS  381 (893)
T ss_pred             cceeeEEEecccCCEEEEcCCccceEEEEEeec----cceeeeccccccceeeEEECCCC-cEEEeccCCCcEEEEeccC
Confidence            3589999999999999998875 8999999864    33445678999999999999974 6999999999999999999


Q ss_pred             Ceeeeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEE
Q 022716           99 GKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIA  177 (293)
Q Consensus        99 ~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  177 (293)
                      +-|..++. +...+..+.|+..|+.+++.+-||+++.||+..+...+....+.++                   ...|++
T Consensus       382 gfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~-------------------Qfscva  442 (893)
T KOG0291|consen  382 GFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPI-------------------QFSCVA  442 (893)
T ss_pred             ceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCce-------------------eeeEEE
Confidence            99988775 5567888999999999999999999999999887766654433222                   235899


Q ss_pred             ECCCCCEEEEecCCC-cEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCC-CEEEEEecCCC
Q 022716          178 IDPMGRYFAVGSADS-LVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTG-RTVHQIPCRAA  255 (293)
Q Consensus       178 ~~~~~~~l~~gs~d~-~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~-~~~~~~~~~~~  255 (293)
                      .+|.|..+..|+.|. .|.+|++++|..+..+.+|+.||.+++|+|.+..||++|-|.+|++||+-.. ..+..+.....
T Consensus       443 vD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sd  522 (893)
T KOG0291|consen  443 VDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSD  522 (893)
T ss_pred             EcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccc
Confidence            999999999998876 5999999999999999999999999999999999999999999999998765 45667777788


Q ss_pred             cceeEECCCCCeEEEEEcCCCCCCCCc
Q 022716          256 MNSVEWNPKYNLLAYAGDDKNKYQADE  282 (293)
Q Consensus       256 i~~~~~sp~~~~la~~~~d~~~~~~~~  282 (293)
                      +..++|+|+|..||++..|+.+.+|+-
T Consensus       523 vl~vsfrPdG~elaVaTldgqItf~d~  549 (893)
T KOG0291|consen  523 VLAVSFRPDGKELAVATLDGQITFFDI  549 (893)
T ss_pred             eeEEEEcCCCCeEEEEEecceEEEEEh
Confidence            999999999999999999976666554

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=3.6e-35  Score=235.75  Aligned_cols=237  Identities=19%  Similarity=0.350  Sum_probs=198.0

Q ss_pred             cccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCC
Q 022716           20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG   99 (293)
Q Consensus        20 ~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~   99 (293)
                      +.+|..+.|.|+|+.|++|++-|...+|+...-    .-...+.+|..+|.++.|+++ +..++||..+|.|++|+....
T Consensus        96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~f----nFEtilQaHDs~Vr~m~ws~~-g~wmiSgD~gG~iKyWqpnmn  170 (464)
T KOG0284|consen   96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSF----NFETILQAHDSPVRTMKWSHN-GTWMISGDKGGMIKYWQPNMN  170 (464)
T ss_pred             ccceeeEEEcCCCceeEeecccccEEEecCcee----eHHHHhhhhcccceeEEEccC-CCEEEEcCCCceEEecccchh
Confidence            458999999999999999999999999986421    112246789999999999986 578999999999999998766


Q ss_pred             eeeeeeeec-CceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEE
Q 022716          100 KCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAI  178 (293)
Q Consensus       100 ~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  178 (293)
                      ........+ ..+.+++|+|++..+++++.||+|++||.+..++-+.                    +..+.-.+.+++|
T Consensus       171 nVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~v--------------------L~GHgwdVksvdW  230 (464)
T KOG0284|consen  171 NVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERV--------------------LRGHGWDVKSVDW  230 (464)
T ss_pred             hhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhhe--------------------eccCCCCcceecc
Confidence            543333344 5678999999999999999999999999876543222                    2334445667888


Q ss_pred             CCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEe-cCCCcc
Q 022716          179 DPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP-CRAAMN  257 (293)
Q Consensus       179 ~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~-~~~~i~  257 (293)
                      ||...++++|+.|+.|++||.+++.++.++.+|...|.++.|+|++++|+|+|.|..++++|+.+-+.+..+. ++..++
T Consensus       231 HP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~  310 (464)
T KOG0284|consen  231 HPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVT  310 (464)
T ss_pred             CCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhhe
Confidence            9999999999999999999999999999999999999999999999999999999999999998766666654 667799


Q ss_pred             eeEECC-CCCeEEEEEcCCCCCCCC
Q 022716          258 SVEWNP-KYNLLAYAGDDKNKYQAD  281 (293)
Q Consensus       258 ~~~~sp-~~~~la~~~~d~~~~~~~  281 (293)
                      +++||| ..++|.+||.|+.+..|.
T Consensus       311 ~~~WhP~~~~lftsgg~Dgsvvh~~  335 (464)
T KOG0284|consen  311 SLTWHPLNESLFTSGGSDGSVVHWV  335 (464)
T ss_pred             eeccccccccceeeccCCCceEEEe
Confidence            999999 558999999997665543

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=5.1e-35  Score=234.85  Aligned_cols=239  Identities=21%  Similarity=0.333  Sum_probs=199.0

Q ss_pred             ecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEe
Q 022716           16 YTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWD   95 (293)
Q Consensus        16 ~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd   95 (293)
                      +..|..+|.++.|+++|.+++||+.+|.||+|+...+..   . .....|...|.+++|+|.+ ..|+|++.|++|+|||
T Consensus       134 lQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnV---k-~~~ahh~eaIRdlafSpnD-skF~t~SdDg~ikiWd  208 (464)
T KOG0284|consen  134 LQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNV---K-IIQAHHAEAIRDLAFSPND-SKFLTCSDDGTIKIWD  208 (464)
T ss_pred             hhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhh---H-HhhHhhhhhhheeccCCCC-ceeEEecCCCeEEEEe
Confidence            358999999999999999999999999999998764321   1 1123455889999999975 5788999999999999


Q ss_pred             CCCCeeeeeeeecC-ceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEE
Q 022716           96 ARSGKCSQQAELSG-ENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCY  174 (293)
Q Consensus        96 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  174 (293)
                      ....+....+..++ .+.+++|+|....+++++.|+.|++||.++..++...                    ..+...+.
T Consensus       209 f~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tl--------------------h~HKntVl  268 (464)
T KOG0284|consen  209 FRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATL--------------------HGHKNTVL  268 (464)
T ss_pred             ccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhh--------------------hhccceEE
Confidence            98776555554333 5778999999999999999999999999987765432                    22344567


Q ss_pred             EEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCC-CEEEEecCCCcEEEEEcCCCCEEEEE--e
Q 022716          175 CIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTG-DYIASASEDLFIDISNVHTGRTVHQI--P  251 (293)
Q Consensus       175 ~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~-~~l~s~s~d~~i~iw~~~~~~~~~~~--~  251 (293)
                      .+.|.|++++|+++|.|..++++|++.++.+..+++|+..|.++.|+|-. .+|++|+.|+.|..|.+...+.+..+  .
T Consensus       269 ~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~A  348 (464)
T KOG0284|consen  269 AVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPA  348 (464)
T ss_pred             EEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcc
Confidence            88899999999999999999999999888888999999999999999965 57899999999999999865555544  3


Q ss_pred             cCCCcceeEECCCCCeEEEEEcCCCCCC
Q 022716          252 CRAAMNSVEWNPKYNLLAYAGDDKNKYQ  279 (293)
Q Consensus       252 ~~~~i~~~~~sp~~~~la~~~~d~~~~~  279 (293)
                      +...|.+++|||-|-+||+|+.|++.+.
T Consensus       349 Hd~~iwsl~~hPlGhil~tgsnd~t~rf  376 (464)
T KOG0284|consen  349 HDGEIWSLAYHPLGHILATGSNDRTVRF  376 (464)
T ss_pred             cccceeeeeccccceeEeecCCCcceee
Confidence            5678999999999999999999875544

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=1.5e-32  Score=207.83  Aligned_cols=229  Identities=21%  Similarity=0.381  Sum_probs=184.9

Q ss_pred             cceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (293)
Q Consensus        12 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i   91 (293)
                      +...|.+|.+.|+++.|..+|+++.|||.||++||||+.....     ...-.|..+|+++..+|... -|++|..+|.|
T Consensus        75 Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~-----qR~~~~~spVn~vvlhpnQt-eLis~dqsg~i  148 (311)
T KOG0315|consen   75 PVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSC-----QRNYQHNSPVNTVVLHPNQT-ELISGDQSGNI  148 (311)
T ss_pred             ceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCccc-----chhccCCCCcceEEecCCcc-eEEeecCCCcE
Confidence            5678899999999999999999999999999999999975221     12336789999999999754 56789999999


Q ss_pred             EEEeCCCCeeeeee--eecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecC
Q 022716           92 RLWDARSGKCSQQA--ELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG  169 (293)
Q Consensus        92 ~vwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  169 (293)
                      ++||+....|....  +....+.++...|||+.++.+...|++.+|++-+......+.              +..-+..+
T Consensus       149 rvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~--------------P~~k~~ah  214 (311)
T KOG0315|consen  149 RVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELE--------------PVHKFQAH  214 (311)
T ss_pred             EEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccce--------------Ehhheecc
Confidence            99999887654432  233456688999999999999999999999986632211111              01113456


Q ss_pred             CCCEEEEEECCCCCEEEEecCCCcEEEEeCCCC-EEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEE
Q 022716          170 NAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM-LCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVH  248 (293)
Q Consensus       170 ~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~-~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~  248 (293)
                      +..+..+-++|++++||++++|.+++||+.+.+ +.-..+++|...+..++||.||+||+||+.|+.+++|++..+++++
T Consensus       215 ~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~  294 (311)
T KOG0315|consen  215 NGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVR  294 (311)
T ss_pred             cceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceee
Confidence            677888899999999999999999999999988 4445678899999999999999999999999999999999999999


Q ss_pred             EEecC-CCcceeE
Q 022716          249 QIPCR-AAMNSVE  260 (293)
Q Consensus       249 ~~~~~-~~i~~~~  260 (293)
                      +++.+ ....+++
T Consensus       295 qy~gh~K~~vc~~  307 (311)
T KOG0315|consen  295 QYQGHHKAAVCVA  307 (311)
T ss_pred             ecCCcccccEEEE
Confidence            88643 3334443

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=1.8e-33  Score=222.71  Aligned_cols=242  Identities=24%  Similarity=0.352  Sum_probs=206.4

Q ss_pred             ceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEE
Q 022716           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (293)
Q Consensus        13 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~   92 (293)
                      .+.+.||.+.|.|+++.|-..+|+||+.|++++|||+++.    ...+.+.||...|..+++++. .-+++++++|++|+
T Consensus       144 ~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg----~LkltltGhi~~vr~vavS~r-HpYlFs~gedk~VK  218 (460)
T KOG0285|consen  144 YRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATG----QLKLTLTGHIETVRGVAVSKR-HPYLFSAGEDKQVK  218 (460)
T ss_pred             hhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccC----eEEEeecchhheeeeeeeccc-CceEEEecCCCeeE
Confidence            3668899999999999999999999999999999999853    344678899999999999986 45899999999999


Q ss_pred             EEeCCCCeeeeeeeec-CceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCC
Q 022716           93 LWDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNA  171 (293)
Q Consensus        93 vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  171 (293)
                      .||+...+.++.+..+ ..+.+++..|.-..+++|+.|.++++||+|+..++..                    +..+..
T Consensus       219 CwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~--------------------l~GH~~  278 (460)
T KOG0285|consen  219 CWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHV--------------------LSGHTN  278 (460)
T ss_pred             EEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEE--------------------ecCCCC
Confidence            9999888877665533 4578899999999999999999999999998665543                    345666


Q ss_pred             CEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEe
Q 022716          172 GCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP  251 (293)
Q Consensus       172 ~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~  251 (293)
                      ++..+.+.|.+..+++||.|++|++||++.++.+.++..|...|.+++.+|.-..+|+++.|. |+-|++..|..+..+.
T Consensus       279 ~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nls  357 (460)
T KOG0285|consen  279 PVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLS  357 (460)
T ss_pred             cceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhccc
Confidence            777888888899999999999999999999999999999999999999999999999999886 6999999988777765


Q ss_pred             cC-CCcceeEECCCCCeEEEEEcCCCCCCCC
Q 022716          252 CR-AAMNSVEWNPKYNLLAYAGDDKNKYQAD  281 (293)
Q Consensus       252 ~~-~~i~~~~~sp~~~~la~~~~d~~~~~~~  281 (293)
                      .+ .-|++++-+.|+ ++++|++++.++.|+
T Consensus       358 gh~~iintl~~nsD~-v~~~G~dng~~~fwd  387 (460)
T KOG0285|consen  358 GHNAIINTLSVNSDG-VLVSGGDNGSIMFWD  387 (460)
T ss_pred             cccceeeeeeeccCc-eEEEcCCceEEEEEe
Confidence            44 457888888766 778888776655544

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2.1e-33  Score=240.31  Aligned_cols=252  Identities=22%  Similarity=0.364  Sum_probs=211.0

Q ss_pred             ccceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCe
Q 022716           11 LHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKT   90 (293)
Q Consensus        11 ~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~   90 (293)
                      ...+.+.||...|.++....+|.+|+|||.|+++++|.++.+...........+|++.|.+++.+..+..+|+|+|.|++
T Consensus       356 ~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~t  435 (775)
T KOG0319|consen  356 SYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCT  435 (775)
T ss_pred             CceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCce
Confidence            34456789999999999777889999999999999999865443333333456899999999998777789999999999


Q ss_pred             EEEEeCCCCeee---------eeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecC
Q 022716           91 VRLWDARSGKCS---------QQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMT  160 (293)
Q Consensus        91 i~vwd~~~~~~~---------~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~  160 (293)
                      +++|++...+..         .... +...+.+++++|+++.+++|+.|.+.++|++++.....                
T Consensus       436 lK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~----------------  499 (775)
T KOG0319|consen  436 LKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLG----------------  499 (775)
T ss_pred             EEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEE----------------
Confidence            999998762211         0111 23346689999999999999999999999998544322                


Q ss_pred             CCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEE
Q 022716          161 GEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISN  240 (293)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~  240 (293)
                          .+..|.-++.|+.|+|.+..++++|.|++|+||.+.++.++++|.+|...|.-+.|-.+|++|++++.||.+++|+
T Consensus       500 ----vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWn  575 (775)
T KOG0319|consen  500 ----VLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWN  575 (775)
T ss_pred             ----EeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEe
Confidence                2445666789999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCEEEEEe-cCCCcceeEECCCCCeEEEEEcCCCCCCCCc
Q 022716          241 VHTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNKYQADE  282 (293)
Q Consensus       241 ~~~~~~~~~~~-~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~  282 (293)
                      +++..++..+. |..+|.+++-+|+..++++||.|+.+..|..
T Consensus       576 ikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD  618 (775)
T KOG0319|consen  576 IKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKD  618 (775)
T ss_pred             ccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeec
Confidence            99999988886 5668999999999999999999975554443

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=6.4e-32  Score=236.03  Aligned_cols=253  Identities=25%  Similarity=0.431  Sum_probs=205.9

Q ss_pred             ccccccceeecCc-cccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEE
Q 022716            7 PFKNLHSREYTGH-KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATA   85 (293)
Q Consensus         7 ~~~~~~~~~~~~h-~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~   85 (293)
                      +++.. .+.+.+| ...|.++.|+++|+.|++++.|+.+++|+......  .....+.+|...|..++|+|++ .+++++
T Consensus       146 ~~~~~-~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~--~~~~~l~~h~~~v~~~~fs~d~-~~l~s~  221 (456)
T KOG0266|consen  146 RVFSL-EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS--NLLRELSGHTRGVSDVAFSPDG-SYLLSG  221 (456)
T ss_pred             cccee-eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc--hhhccccccccceeeeEECCCC-cEEEEe
Confidence            33344 4455455 78999999999999999999999999999853321  1223457899999999999975 589999


Q ss_pred             eCCCeEEEEeC-CCCeeeeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCE
Q 022716           86 SGDKTVRLWDA-RSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEM  163 (293)
Q Consensus        86 ~~d~~i~vwd~-~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~  163 (293)
                      +.|+++++||+ ..+.++..+. +...+.+++|+|+|+.+++|+.|++|++||+++.++...                  
T Consensus       222 s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~------------------  283 (456)
T KOG0266|consen  222 SDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRK------------------  283 (456)
T ss_pred             cCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEe------------------
Confidence            99999999999 5557777765 455678999999999999999999999999998665543                  


Q ss_pred             EEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCE--EEEEeeccCCC--eeEEEEccCCCEEEEecCCCcEEEE
Q 022716          164 FFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEML--CVRTFTKLEWP--VRTISFSHTGDYIASASEDLFIDIS  239 (293)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~--~~~~~~~~~~~--v~~l~~sp~~~~l~s~s~d~~i~iw  239 (293)
                        +..+...+.+++|+++++++++++.|+.|++||+.++.  +.+.+..+..+  +..++|+|++.++++++.|+.+++|
T Consensus       284 --l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w  361 (456)
T KOG0266|consen  284 --LKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLW  361 (456)
T ss_pred             --eeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEE
Confidence              34567788999999999999999999999999999998  56777776655  9999999999999999999999999


Q ss_pred             EcCCCCEEEEEecC-C---CcceeEECCCCCeEEEEEcCCCCCCCCcc
Q 022716          240 NVHTGRTVHQIPCR-A---AMNSVEWNPKYNLLAYAGDDKNKYQADEG  283 (293)
Q Consensus       240 ~~~~~~~~~~~~~~-~---~i~~~~~sp~~~~la~~~~d~~~~~~~~~  283 (293)
                      |+..++.+..+..+ .   .+.+...++.+.++.+|+.|+.+++|+-.
T Consensus       362 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~  409 (456)
T KOG0266|consen  362 DLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSS  409 (456)
T ss_pred             EccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCC
Confidence            99998877665432 2   23344557889999999999766655543

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.5e-33  Score=222.22  Aligned_cols=253  Identities=25%  Similarity=0.393  Sum_probs=208.8

Q ss_pred             cccccccceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEE
Q 022716            6 IPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATA   85 (293)
Q Consensus         6 ~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~   85 (293)
                      ||.+++ .+.+.||..+|+.+-|.|+-...++++.|++|++||......    ...++||.+.+.++.|+.. +.+++++
T Consensus        95 ipRp~l-~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~----e~~LrGHt~sv~di~~~a~-Gk~l~tc  168 (406)
T KOG0295|consen   95 IPRPNL-VQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGEL----ERSLRGHTDSVFDISFDAS-GKYLATC  168 (406)
T ss_pred             CCCCCc-hhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhh----hhhhhccccceeEEEEecC-ccEEEec
Confidence            444333 234668999999999999999999999999999999976432    3358899999999999876 4799999


Q ss_pred             eCCCeEEEEeCCC-CeeeeeeeecCc-eEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCE
Q 022716           86 SGDKTVRLWDARS-GKCSQQAELSGE-NINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEM  163 (293)
Q Consensus        86 ~~d~~i~vwd~~~-~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~  163 (293)
                      +.|-.+++||..+ .+|......+.+ +.++.|-|.|.++++++.|.+|+.|++.+...+....                
T Consensus       169 SsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~----------------  232 (406)
T KOG0295|consen  169 SSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFP----------------  232 (406)
T ss_pred             CCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEecc----------------
Confidence            9999999999876 345554444444 4568899999999999999999999998876655432                


Q ss_pred             EEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccC---------------CCEEE
Q 022716          164 FFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHT---------------GDYIA  228 (293)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~---------------~~~l~  228 (293)
                          .+..-+-.+..+-||.++|+++.|.++++|-..++.+...+.+|+.+|.+++|.|.               +++++
T Consensus       233 ----~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~  308 (406)
T KOG0295|consen  233 ----GHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLG  308 (406)
T ss_pred             ----CchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEE
Confidence                22234556788899999999999999999999999888889999999999999772               26999


Q ss_pred             EecCCCcEEEEEcCCCCEEEEEe-cCCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeeec
Q 022716          229 SASEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN  292 (293)
Q Consensus       229 s~s~d~~i~iw~~~~~~~~~~~~-~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~~  292 (293)
                      ++|.|++|++||+.+|.++.++. +.+.|+.++|+|.|+||+++.+|+        ++|||++.|
T Consensus       309 s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDk--------tlrvwdl~~  365 (406)
T KOG0295|consen  309 SGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDK--------TLRVWDLKN  365 (406)
T ss_pred             eecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCC--------cEEEEEecc
Confidence            99999999999999999988764 567899999999999999999886        566666543

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=2.1e-32  Score=211.43  Aligned_cols=206  Identities=25%  Similarity=0.377  Sum_probs=182.1

Q ss_pred             cceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (293)
Q Consensus        12 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i   91 (293)
                      ..+++.||.+-+.|+.|-+ +.+|+|||.|.++-+||++..    .....+.+|.+-|.++.+.|.+.+.++||+.|+..
T Consensus       137 v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g----~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~a  211 (343)
T KOG0286|consen  137 VSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETG----QQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSA  211 (343)
T ss_pred             eeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccc----eEEEEecCCcccEEEEecCCCCCCeEEecccccce
Confidence            3577999999999999987 557999999999999999853    23446889999999999999778899999999999


Q ss_pred             EEEeCCCCeeeeeeeec-CceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCC
Q 022716           92 RLWDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGN  170 (293)
Q Consensus        92 ~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  170 (293)
                      ++||++.+.+.+.++.+ ..+.++.|.|+|.-+++|+.|+++++||+|..+.+......                  ...
T Consensus       212 klWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~------------------~~~  273 (343)
T KOG0286|consen  212 KLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHD------------------SII  273 (343)
T ss_pred             eeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccC------------------ccc
Confidence            99999999999988754 45678999999999999999999999999987655443211                  123


Q ss_pred             CCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEE
Q 022716          171 AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISN  240 (293)
Q Consensus       171 ~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~  240 (293)
                      .++++++|+..|++|.+|..|.++.+||.-+++.+..+.+|++.|.++..+|||..|+|||-|.+++||.
T Consensus       274 ~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  274 CGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             CCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence            4678999999999999999999999999999999999999999999999999999999999999999994

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=7.2e-31  Score=208.37  Aligned_cols=264  Identities=20%  Similarity=0.350  Sum_probs=201.3

Q ss_pred             ceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEE
Q 022716           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (293)
Q Consensus        13 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~   92 (293)
                      ..+++||+..|+|+.||.||.+||||+.+|.|+||+..+...    ...+-.--+.|.-+.|||. ...|+.|+.||.+-
T Consensus        99 ~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~----~~~~~~e~~dieWl~WHp~-a~illAG~~DGsvW  173 (399)
T KOG0296|consen   99 AGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGE----QWKLDQEVEDIEWLKWHPR-AHILLAGSTDGSVW  173 (399)
T ss_pred             eeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCce----EEEeecccCceEEEEeccc-ccEEEeecCCCcEE
Confidence            356889999999999999999999999999999999875431    2233334456888999996 56888999999999


Q ss_pred             EEeCCCCeeeeeeeec-CceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecc--cceeeeeEEecCC--------
Q 022716           93 LWDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF--GYEVNEIAWNMTG--------  161 (293)
Q Consensus        93 vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~--~~~~~~v~~~~~~--------  161 (293)
                      +|.+.++...+.+..+ .++.+-.|.|+|+.++++..|++|++|++.+..+.+....  +.+...+..+..+        
T Consensus       174 mw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~  253 (399)
T KOG0296|consen  174 MWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNS  253 (399)
T ss_pred             EEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccC
Confidence            9999886444444443 3455668999999999999999999999999988877551  1111111111111        


Q ss_pred             ------------CEEEEecC---------CC---CEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeE
Q 022716          162 ------------EMFFLTTG---------NA---GCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRT  217 (293)
Q Consensus       162 ------------~~~~~~~~---------~~---~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~  217 (293)
                                  ..+....+         ..   .+-++.++..-.+.|+|+-||+|.|||+.....++.+ .|+.+|..
T Consensus       254 e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c-~he~~V~~  332 (399)
T KOG0296|consen  254 EGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHIC-EHEDGVTK  332 (399)
T ss_pred             CccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheec-cCCCceEE
Confidence                        11111111         01   1223445556678999999999999999887655544 68889999


Q ss_pred             EEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEe-cCCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeee
Q 022716          218 ISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE  291 (293)
Q Consensus       218 l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~-~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~  291 (293)
                      +.|-+ ..+|++++.||.|+.||.++|+++..+. |..+|-+++.+|+.++++++|.|        .+.||+.++
T Consensus       333 l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D--------~~a~VF~v~  398 (399)
T KOG0296|consen  333 LKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDD--------NTALVFEVP  398 (399)
T ss_pred             EEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCC--------CeEEEEecC
Confidence            99988 8899999999999999999999998875 56689999999999999999987        467777654

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=5.1e-31  Score=225.76  Aligned_cols=267  Identities=22%  Similarity=0.382  Sum_probs=210.2

Q ss_pred             ceeecC-ccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCC-CEEEEEeCCCe
Q 022716           13 SREYTG-HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHA-DLIATASGDKT   90 (293)
Q Consensus        13 ~~~~~~-h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~-~~l~s~~~d~~   90 (293)
                      ++..+. |.+||.-++|+|.|..|++|+.||.+++||+..+    ...-.++||.+.|.++.|+|... .+|++|..|++
T Consensus        97 irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~----~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~  172 (775)
T KOG0319|consen   97 IRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNG----YCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGT  172 (775)
T ss_pred             hHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCC----EEEEEecCCCceEEEEEeCCccchhheeecCCCce
Confidence            445555 9999999999999999999999999999999753    34457899999999999998643 46899999999


Q ss_pred             EEEEeCCCCe-eeeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecc--------------------
Q 022716           91 VRLWDARSGK-CSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF--------------------  148 (293)
Q Consensus        91 i~vwd~~~~~-~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~--------------------  148 (293)
                      +++||++... |...+. +.+.++++++.+|+..+++++.|..+.+||+.+.+..+....                    
T Consensus       173 v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~  252 (775)
T KOG0319|consen  173 VRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEY  252 (775)
T ss_pred             EEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceE
Confidence            9999998554 355444 456788999999999999999999999999854432211100                    


Q ss_pred             ----cceeeeeE-------------------------------------------------------------------E
Q 022716          149 ----GYEVNEIA-------------------------------------------------------------------W  157 (293)
Q Consensus       149 ----~~~~~~v~-------------------------------------------------------------------~  157 (293)
                          +..-..-.                                                                   |
T Consensus       253 ~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~l  332 (775)
T KOG0319|consen  253 IITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFL  332 (775)
T ss_pred             EEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeec
Confidence                00000000                                                                   1


Q ss_pred             ecCCCEEEEecC--------------------------------------------------------------------
Q 022716          158 NMTGEMFFLTTG--------------------------------------------------------------------  169 (293)
Q Consensus       158 ~~~~~~~~~~~~--------------------------------------------------------------------  169 (293)
                      .|....++++.+                                                                    
T Consensus       333 G~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~  412 (775)
T KOG0319|consen  333 GPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTN  412 (775)
T ss_pred             CCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhccccc
Confidence            111000000000                                                                    


Q ss_pred             --------------------------------------------------CCCEEEEEECCCCCEEEEecCCCcEEEEeC
Q 022716          170 --------------------------------------------------NAGCYCIAIDPMGRYFAVGSADSLVSLWDI  199 (293)
Q Consensus       170 --------------------------------------------------~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~  199 (293)
                                                                        +..+.|+++.|++.++||||.|++.+||++
T Consensus       413 svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~l  492 (775)
T KOG0319|consen  413 SVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDL  492 (775)
T ss_pred             ccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecc
Confidence                                                              012557899999999999999999999999


Q ss_pred             CCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEe-cCCCcceeEECCCCCeEEEEEcCCCCC
Q 022716          200 SEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNKY  278 (293)
Q Consensus       200 ~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~-~~~~i~~~~~sp~~~~la~~~~d~~~~  278 (293)
                      ++.....++.+|.-.|.++.|+|..+.+||+|.|.+|+||.+.++.+++++. +...|-.++|-.++.+|++++.|+   
T Consensus       493 e~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adG---  569 (775)
T KOG0319|consen  493 EQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADG---  569 (775)
T ss_pred             cCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCC---
Confidence            9999999999999999999999999999999999999999999999999987 677899999999999999999985   


Q ss_pred             CCCcceEEEEeee
Q 022716          279 QADEGVFRIYGFE  291 (293)
Q Consensus       279 ~~~~~~~~~~~~~  291 (293)
                           -+|||++-
T Consensus       570 -----liKlWnik  577 (775)
T KOG0319|consen  570 -----LIKLWNIK  577 (775)
T ss_pred             -----cEEEEecc
Confidence                 55666653

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.3e-30  Score=201.36  Aligned_cols=246  Identities=24%  Similarity=0.387  Sum_probs=197.5

Q ss_pred             eecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCc-------------------------------e------
Q 022716           15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGK-------------------------------V------   57 (293)
Q Consensus        15 ~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~-------------------------------~------   57 (293)
                      .+..-...|.++.|+++|..|++++.|.++++||..+.....                               +      
T Consensus         9 ~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~   88 (311)
T KOG1446|consen    9 VFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLH   88 (311)
T ss_pred             ccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEee
Confidence            344446799999999999999999999999999986432100                               0      


Q ss_pred             ---eEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEE
Q 022716           58 ---KDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTI  134 (293)
Q Consensus        58 ---~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l  134 (293)
                         ....+.||...|++++.+|.+ +.++|++.|++|++||++..+|...+...+.+ .++|.|+|-.+|++...+.|++
T Consensus        89 dNkylRYF~GH~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p-i~AfDp~GLifA~~~~~~~IkL  166 (311)
T KOG1446|consen   89 DNKYLRYFPGHKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP-IAAFDPEGLIFALANGSELIKL  166 (311)
T ss_pred             cCceEEEcCCCCceEEEEEecCCC-CeEEecccCCeEEeeEecCCCCceEEecCCCc-ceeECCCCcEEEEecCCCeEEE
Confidence               011367999999999999976 78899999999999999988887766655544 5789999999999998889999


Q ss_pred             EEccccc--eeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccC
Q 022716          135 LDVRKFK--PIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLE  212 (293)
Q Consensus       135 ~d~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~  212 (293)
                      +|+|...  |......+.                 ........+.|+|+|++++.++..+.+++.|.-.|....++..+.
T Consensus       167 yD~Rs~dkgPF~tf~i~~-----------------~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~  229 (311)
T KOG1446|consen  167 YDLRSFDKGPFTTFSITD-----------------NDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYP  229 (311)
T ss_pred             EEecccCCCCceeEccCC-----------------CCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeecc
Confidence            9999753  222211110                 123345689999999999999999999999999999888888776


Q ss_pred             CCe---eEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEec--CCCcceeEECCCCCeEEEEEcCCCCCC
Q 022716          213 WPV---RTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPC--RAAMNSVEWNPKYNLLAYAGDDKNKYQ  279 (293)
Q Consensus       213 ~~v---~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~--~~~i~~~~~sp~~~~la~~~~d~~~~~  279 (293)
                      ..-   ...+|+||++++++|+.||.|.+|++++|.++..+..  ..++.++.|+|...++|+++..-..|.
T Consensus       230 ~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s~l~fw~  301 (311)
T KOG1446|consen  230 NAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASSNLVFWL  301 (311)
T ss_pred             CCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCceEEEEe
Confidence            432   5677999999999999999999999999999887653  567899999999999999986544443

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.6e-31  Score=231.64  Aligned_cols=260  Identities=21%  Similarity=0.284  Sum_probs=209.2

Q ss_pred             ccceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCe
Q 022716           11 LHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKT   90 (293)
Q Consensus        11 ~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~   90 (293)
                      ..+..|..|.++|..+.|+|++..++|||.|-+|++|+....    .....+.||.+.|..+.|+++- -.++|+|.|.+
T Consensus        42 tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~r----rclftL~GHlDYVRt~~FHhey-PWIlSASDDQT  116 (1202)
T KOG0292|consen   42 TLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTR----RCLFTLLGHLDYVRTVFFHHEY-PWILSASDDQT  116 (1202)
T ss_pred             hHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccc----eehhhhccccceeEEeeccCCC-ceEEEccCCCe
Confidence            345668899999999999999999999999999999998743    3345688999999999999875 48999999999


Q ss_pred             EEEEeCCCCeeeeeeeecCc-eEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecc--cceeeeeE-----Eec-C-
Q 022716           91 VRLWDARSGKCSQQAELSGE-NINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF--GYEVNEIA-----WNM-T-  160 (293)
Q Consensus        91 i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~--~~~~~~v~-----~~~-~-  160 (293)
                      |+||+.++++|+.....+.+ ++|.+|+|....+++++-|.+|++||+...+..+...-  .......+     +.. + 
T Consensus       117 IrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~Da  196 (1202)
T KOG0292|consen  117 IRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDA  196 (1202)
T ss_pred             EEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCe
Confidence            99999999999998876654 67888999999999999999999999865332211110  00000000     000 0 


Q ss_pred             CCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCC--EEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEE
Q 022716          161 GEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM--LCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDI  238 (293)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~--~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~i  238 (293)
                      --...+..|+-++.-++|+|.-..+++|++|..|++|.+...  -.+.+..+|.+.|.++-|+|...++++.|+|+.|++
T Consensus       197 VVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirV  276 (1202)
T KOG0292|consen  197 VVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRV  276 (1202)
T ss_pred             eeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEE
Confidence            012335566777889999999999999999999999987532  235677899999999999999999999999999999


Q ss_pred             EEcCCCCEEEEEe-cCCCcceeEECCCCCeEEEEEcCC
Q 022716          239 SNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDK  275 (293)
Q Consensus       239 w~~~~~~~~~~~~-~~~~i~~~~~sp~~~~la~~~~d~  275 (293)
                      ||....+.++++. ...+-..++-||..|++|.|-+.+
T Consensus       277 wDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsG  314 (1202)
T KOG0292|consen  277 WDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSG  314 (1202)
T ss_pred             EecccccceeeeeccCCeEEEEEecCCcceeeeecCCc
Confidence            9999988888774 355788999999999999998765

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.7e-31  Score=232.03  Aligned_cols=245  Identities=20%  Similarity=0.320  Sum_probs=199.3

Q ss_pred             eeec-CccccEEEEEECCCCCeEEEEeCCCcEEEeecCCC--------------------------------CC------
Q 022716           14 REYT-GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPH--------------------------------GH------   54 (293)
Q Consensus        14 ~~~~-~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~--------------------------------~~------   54 (293)
                      +++. +|++.|.++.||+||++||+||.|+.||||.+...                                ..      
T Consensus       260 Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~  339 (712)
T KOG0283|consen  260 QEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS  339 (712)
T ss_pred             eccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence            5566 89999999999999999999999999999987540                                00      


Q ss_pred             ------Cc------------eeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeeeecCceEEEEE
Q 022716           55 ------GK------------VKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITY  116 (293)
Q Consensus        55 ------~~------------~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~  116 (293)
                            +.            .....+.||.+.|.++.|+.  .++|+|++-|.+||+|.+....|+..+.+..-++|++|
T Consensus       340 ~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK--n~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaF  417 (712)
T KOG0283|consen  340 RKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK--NNFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAF  417 (712)
T ss_pred             ccccCCccccCCCccccccccchhhhhccchhheeccccc--CCeeEeccccccEEeecCCCcceeeEEecCCeeEEEEe
Confidence                  00            00123678999999999985  36899999999999999999999999999999999999


Q ss_pred             cC-CCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEE
Q 022716          117 KP-DGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVS  195 (293)
Q Consensus       117 ~~-~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~  195 (293)
                      .| |++++++|+-|+.++||++...+..            .|+.         -...|+++++.|+|+..++|+-+|.++
T Consensus       418 nPvDDryFiSGSLD~KvRiWsI~d~~Vv------------~W~D---------l~~lITAvcy~PdGk~avIGt~~G~C~  476 (712)
T KOG0283|consen  418 NPVDDRYFISGSLDGKVRLWSISDKKVV------------DWND---------LRDLITAVCYSPDGKGAVIGTFNGYCR  476 (712)
T ss_pred             cccCCCcEeecccccceEEeecCcCeeE------------eehh---------hhhhheeEEeccCCceEEEEEeccEEE
Confidence            99 7889999999999999998764422            2321         124578999999999999999999999


Q ss_pred             EEeCCCCEEEEEee---------ccCCCeeEEEEccCCC-EEEEecCCCcEEEEEcCCCCEEEEEec---CCCcceeEEC
Q 022716          196 LWDISEMLCVRTFT---------KLEWPVRTISFSHTGD-YIASASEDLFIDISNVHTGRTVHQIPC---RAAMNSVEWN  262 (293)
Q Consensus       196 iwd~~~~~~~~~~~---------~~~~~v~~l~~sp~~~-~l~s~s~d~~i~iw~~~~~~~~~~~~~---~~~i~~~~~s  262 (293)
                      +|++........+.         .+. .|+.+.|.|... .|+..+.|..|+|+|..+..+++++..   ...-....|+
T Consensus       477 fY~t~~lk~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs  555 (712)
T KOG0283|consen  477 FYDTEGLKLVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFS  555 (712)
T ss_pred             EEEccCCeEEEeeeEeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEc
Confidence            99998765544332         133 799999998654 466668999999999988777766642   2345678999


Q ss_pred             CCCCeEEEEEcCCCCCCCCc
Q 022716          263 PKYNLLAYAGDDKNKYQADE  282 (293)
Q Consensus       263 p~~~~la~~~~d~~~~~~~~  282 (293)
                      .||++|++|++|..+|+|..
T Consensus       556 ~Dgk~IVs~seDs~VYiW~~  575 (712)
T KOG0283|consen  556 SDGKHIVSASEDSWVYIWKN  575 (712)
T ss_pred             cCCCEEEEeecCceEEEEeC
Confidence            99999999999999998875

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=7.5e-32  Score=203.52  Aligned_cols=259  Identities=22%  Similarity=0.333  Sum_probs=197.4

Q ss_pred             ecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEE-cCCCCCEEEEEeCCCeEEEE
Q 022716           16 YTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW-DPKHADLIATASGDKTVRLW   94 (293)
Q Consensus        16 ~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~-~~~~~~~l~s~~~d~~i~vw   94 (293)
                      -++|...|+.+..+..|++|||+++|++|||+.+.++.. ......|.||+++|..++| +|..+.+|+|++.||.|.||
T Consensus         7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~-s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiW   85 (299)
T KOG1332|consen    7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ-SKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIW   85 (299)
T ss_pred             hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC-ceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEE
Confidence            468999999999999999999999999999999987543 2344578999999999999 78878999999999999999


Q ss_pred             eCCCCeeeeeee---ecCceEEEEEcCC--CCEEEEEeCCCeEEEEEcccc-ceeee---ecccceeeeeEEecCCCEEE
Q 022716           95 DARSGKCSQQAE---LSGENINITYKPD--GTHIAVGNRDDELTILDVRKF-KPIHR---RKFGYEVNEIAWNMTGEMFF  165 (293)
Q Consensus        95 d~~~~~~~~~~~---~~~~~~~~~~~~~--~~~l~~~~~d~~i~l~d~~~~-~~~~~---~~~~~~~~~v~~~~~~~~~~  165 (293)
                      .-.+++..+..+   +...+.+++|.|.  |-.|+++++||.|.+++.+.. .....   ..+...++.+.|.|....-.
T Consensus        86 ke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~  165 (299)
T KOG1332|consen   86 KEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGS  165 (299)
T ss_pred             ecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcc
Confidence            998886544333   4566778888874  568999999999999998765 11111   12456678888887622100


Q ss_pred             EecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCC--EEEEEeeccCCCeeEEEEccCC----CEEEEecCCCcEEEE
Q 022716          166 LTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM--LCVRTFTKLEWPVRTISFSHTG----DYIASASEDLFIDIS  239 (293)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~--~~~~~~~~~~~~v~~l~~sp~~----~~l~s~s~d~~i~iw  239 (293)
                      +..+.       ....-+.|++|+.|+.|+||+..+.  ..-.++.+|...|+.++|+|.-    .++|++|+||.+.||
T Consensus       166 ~~~~~-------~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIw  238 (299)
T KOG1332|consen  166 LVDQG-------PAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIW  238 (299)
T ss_pred             ccccC-------cccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEE
Confidence            00000       0011356999999999999998764  3344588999999999999974    589999999999999


Q ss_pred             EcCCC-CE-EEEE--ecCCCcceeEECCCCCeEEEEEcCCCCCCCCc
Q 022716          240 NVHTG-RT-VHQI--PCRAAMNSVEWNPKYNLLAYAGDDKNKYQADE  282 (293)
Q Consensus       240 ~~~~~-~~-~~~~--~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~  282 (293)
                      ..... .. ..++  +....+-.++||+.|+.||.++.|.+++.|.+
T Consensus       239 t~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke  285 (299)
T KOG1332|consen  239 TKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKE  285 (299)
T ss_pred             EecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEe
Confidence            87632 11 1111  12346889999999999999999988887766

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=100.00  E-value=3.1e-31  Score=218.96  Aligned_cols=251  Identities=22%  Similarity=0.311  Sum_probs=195.5

Q ss_pred             ccceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCC-------------------------Ccee-------
Q 022716           11 LHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGH-------------------------GKVK-------   58 (293)
Q Consensus        11 ~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~-------------------------~~~~-------   58 (293)
                      .+.-.+.+|...|.++++.|.|-+|+|||.|.+|++||+.....                         ..+.       
T Consensus       158 shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aq  237 (641)
T KOG0772|consen  158 SHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQ  237 (641)
T ss_pred             cceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcc
Confidence            45566889999999999999999999999999999999853210                         0000       


Q ss_pred             --E---------------------EEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCee-eeeeee------c
Q 022716           59 --D---------------------IELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKC-SQQAEL------S  108 (293)
Q Consensus        59 --~---------------------~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~-~~~~~~------~  108 (293)
                        .                     ...+||...+++.+|+|.....++|++.||++|+||+.+.+. ...+..      .
T Consensus       238 akl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~R  317 (641)
T KOG0772|consen  238 AKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKR  317 (641)
T ss_pred             eeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcc
Confidence              0                     023579999999999999888899999999999999976542 222222      2


Q ss_pred             CceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCC--CEEEEEECCCCCEEE
Q 022716          109 GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNA--GCYCIAIDPMGRYFA  186 (293)
Q Consensus       109 ~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~  186 (293)
                      -.+.+|+|+|||+.+++|..||.|.+||.++....                 ..+.+-..|..  .++||+|+++|++|+
T Consensus       318 v~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~-----------------p~~~vk~AH~~g~~Itsi~FS~dg~~Ll  380 (641)
T KOG0772|consen  318 VPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVR-----------------PVMKVKDAHLPGQDITSISFSYDGNYLL  380 (641)
T ss_pred             cCceeeecCCCcchhhhcccCCceeeeecCCcccc-----------------cceEeeeccCCCCceeEEEeccccchhh
Confidence            24678999999999999999999999997543211                 11122233443  789999999999999


Q ss_pred             EecCCCcEEEEeCCCCE-EEEEeecc--CCCeeEEEEccCCCEEEEecC------CCcEEEEEcCCCCEEEEEec-CCCc
Q 022716          187 VGSADSLVSLWDISEML-CVRTFTKL--EWPVRTISFSHTGDYIASASE------DLFIDISNVHTGRTVHQIPC-RAAM  256 (293)
Q Consensus       187 ~gs~d~~i~iwd~~~~~-~~~~~~~~--~~~v~~l~~sp~~~~l~s~s~------d~~i~iw~~~~~~~~~~~~~-~~~i  256 (293)
                      +-+.|+++++||+++.. ++....+.  ..+-+.++|||+.+++++|..      -+.+.++|..+...+..+.. ..+|
T Consensus       381 SRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSv  460 (641)
T KOG0772|consen  381 SRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASV  460 (641)
T ss_pred             hccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceE
Confidence            99999999999998764 45555554  357788999999999999854      46799999999888877654 4578


Q ss_pred             ceeEECCCCCeEEEEEcCCCCC
Q 022716          257 NSVEWNPKYNLLAYAGDDKNKY  278 (293)
Q Consensus       257 ~~~~~sp~~~~la~~~~d~~~~  278 (293)
                      ..+.|||..|+|..|+.|++++
T Consensus       461 v~~~WhpkLNQi~~gsgdG~~~  482 (641)
T KOG0772|consen  461 VRCLWHPKLNQIFAGSGDGTAH  482 (641)
T ss_pred             EEEeecchhhheeeecCCCceE
Confidence            8999999999999999886444

>PTZ00421 coronin; Provisional

Probab=100.00  E-value=2.4e-29  Score=219.55  Aligned_cols=231  Identities=19%  Similarity=0.256  Sum_probs=176.2

Q ss_pred             eecCccccEEEEEECC-CCCeEEEEeCCCcEEEeecCCCCCC---ceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCe
Q 022716           15 EYTGHKKKVHSVAWNC-TGTKLASGSVDQTARVWHIEPHGHG---KVKDIELRGHADSVDQLCWDPKHADLIATASGDKT   90 (293)
Q Consensus        15 ~~~~h~~~v~~l~~s~-~~~~l~s~~~dg~v~iw~~~~~~~~---~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~   90 (293)
                      .+.||.+.|.+++|+| ++++|++|+.|++|++||+......   ......+.+|...|.+++|+|....+|+|++.|+.
T Consensus        70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt  149 (493)
T PTZ00421         70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV  149 (493)
T ss_pred             eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence            4779999999999999 8899999999999999999753211   01234578999999999999986679999999999


Q ss_pred             EEEEeCCCCeeeeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecC
Q 022716           91 VRLWDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG  169 (293)
Q Consensus        91 i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  169 (293)
                      |++||+.+++....+. +...+.+++|+|+|..|++++.|++|++||+++.+.+....                    .+
T Consensus       150 VrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~--------------------~H  209 (493)
T PTZ00421        150 VNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVE--------------------AH  209 (493)
T ss_pred             EEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEe--------------------cC
Confidence            9999999988776665 34567889999999999999999999999999866544321                    11


Q ss_pred             CC-CEEEEEECCCCCEEEEe----cCCCcEEEEeCCCCEE-EEEeeccC-CCeeEEEEccCCCEEEEec-CCCcEEEEEc
Q 022716          170 NA-GCYCIAIDPMGRYFAVG----SADSLVSLWDISEMLC-VRTFTKLE-WPVRTISFSHTGDYIASAS-EDLFIDISNV  241 (293)
Q Consensus       170 ~~-~~~~~~~~~~~~~l~~g----s~d~~i~iwd~~~~~~-~~~~~~~~-~~v~~l~~sp~~~~l~s~s-~d~~i~iw~~  241 (293)
                      .. ....+.+.+++..++++    +.|+.|++||+++... +.....+. ..+....|+|++++|++|+ .|+.|++|++
T Consensus       210 ~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl  289 (493)
T PTZ00421        210 ASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFEL  289 (493)
T ss_pred             CCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEe
Confidence            11 12234566666666554    3589999999987543 32222222 3456677999999998887 5999999999


Q ss_pred             CCCCEEEEEe--cCCCcceeEECCCC
Q 022716          242 HTGRTVHQIP--CRAAMNSVEWNPKY  265 (293)
Q Consensus       242 ~~~~~~~~~~--~~~~i~~~~~sp~~  265 (293)
                      .+++.+....  ...+++.++|.|+-
T Consensus       290 ~~~~~~~~~~~~s~~~~~g~~~~pk~  315 (493)
T PTZ00421        290 MNERLTFCSSYSSVEPHKGLCMMPKW  315 (493)
T ss_pred             eCCceEEEeeccCCCCCcceEecccc
Confidence            9988765543  34568889998854

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.98  E-value=4e-30  Score=199.61  Aligned_cols=252  Identities=20%  Similarity=0.293  Sum_probs=192.0

Q ss_pred             ccccEEEEEECCC-CCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCC
Q 022716           19 HKKKVHSVAWNCT-GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDAR   97 (293)
Q Consensus        19 h~~~v~~l~~s~~-~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~   97 (293)
                      -.+.|.+|+|||. ...++.||+||+||+|++...+  .........|.++|.+++|+.++ ..+++|+.|+.+++||+.
T Consensus        26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g--~~~~ka~~~~~~PvL~v~Wsddg-skVf~g~~Dk~~k~wDL~  102 (347)
T KOG0647|consen   26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSG--QLVPKAQQSHDGPVLDVCWSDDG-SKVFSGGCDKQAKLWDLA  102 (347)
T ss_pred             cccchheeEeccccCceEEecccCCceEEEEEecCC--cccchhhhccCCCeEEEEEccCC-ceEEeeccCCceEEEEcc
Confidence            3578999999994 4566699999999999997532  22223355789999999999765 688899999999999999


Q ss_pred             CCeeeeeeeecCceEEEEEcCCCC--EEEEEeCCCeEEEEEccccceeeeecccceeeeeEE-------ecCCCEEEEec
Q 022716           98 SGKCSQQAELSGENINITYKPDGT--HIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAW-------NMTGEMFFLTT  168 (293)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~-------~~~~~~~~~~~  168 (293)
                      +++......+.+++.++.|-+...  -|++|+.|.+++.||+|...++....++..+.....       ...++.+.+..
T Consensus       103 S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vyn  182 (347)
T KOG0647|consen  103 SGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYN  182 (347)
T ss_pred             CCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEE
Confidence            997777667778888899876544  789999999999999999998888776655433211       11111111111


Q ss_pred             C--------------CCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEE--EEEeecc---------CCCeeEEEEccC
Q 022716          169 G--------------NAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLC--VRTFTKL---------EWPVRTISFSHT  223 (293)
Q Consensus       169 ~--------------~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~--~~~~~~~---------~~~v~~l~~sp~  223 (293)
                      -              .-.+-|+++.++....|.|+-+|.+-+..+.....  -.+|+=|         -.+|++|+|+|.
T Consensus       183 L~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~  262 (347)
T KOG0647|consen  183 LENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPV  262 (347)
T ss_pred             cCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecc
Confidence            1              11245888888888889999999999988765411  1122222         246899999999


Q ss_pred             CCEEEEecCCCcEEEEEcCCCCEEEEE-ecCCCcceeEECCCCCeEEEEEc
Q 022716          224 GDYIASASEDLFIDISNVHTGRTVHQI-PCRAAMNSVEWNPKYNLLAYAGD  273 (293)
Q Consensus       224 ~~~l~s~s~d~~i~iw~~~~~~~~~~~-~~~~~i~~~~~sp~~~~la~~~~  273 (293)
                      -..|+|++.||...+||-....+++.. .+..+|++.+|+.+|+++|++-.
T Consensus       263 hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~g  313 (347)
T KOG0647|consen  263 HGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYALG  313 (347)
T ss_pred             cceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEee
Confidence            999999999999999998887777765 45679999999999999999874

>PTZ00420 coronin; Provisional

Probab=99.97  E-value=9.5e-29  Score=217.06  Aligned_cols=239  Identities=19%  Similarity=0.242  Sum_probs=176.7

Q ss_pred             cceeecCccccEEEEEECCC-CCeEEEEeCCCcEEEeecCCCCCCc----eeEEEeeCCcCCeeEEEEcCCCCCEEEEEe
Q 022716           12 HSREYTGHKKKVHSVAWNCT-GTKLASGSVDQTARVWHIEPHGHGK----VKDIELRGHADSVDQLCWDPKHADLIATAS   86 (293)
Q Consensus        12 ~~~~~~~h~~~v~~l~~s~~-~~~l~s~~~dg~v~iw~~~~~~~~~----~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~   86 (293)
                      ....+.+|.+.|.+++|+|+ +++|+||+.||+|++||+.......    .....+.+|...|.+++|+|.+..+|+|++
T Consensus        66 ~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS  145 (568)
T PTZ00420         66 PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSG  145 (568)
T ss_pred             eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEe
Confidence            34568899999999999997 7899999999999999996432100    112346789999999999998766778999


Q ss_pred             CCCeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeeccc-ceeeeeEEecCCCEEE
Q 022716           87 GDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFG-YEVNEIAWNMTGEMFF  165 (293)
Q Consensus        87 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~  165 (293)
                      .|+.|++||+++++....+.....+.+++|+|+|..|++++.|+.+++||+++...+...... ..+...          
T Consensus       146 ~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~----------  215 (568)
T PTZ00420        146 FDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTK----------  215 (568)
T ss_pred             CCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeE----------
Confidence            999999999999887666666677889999999999999999999999999987655432211 000000          


Q ss_pred             EecCCCCEEEEEECCCCCEEEEecCCC----cEEEEeCCC-CEEEEEeecc--CCCeeEEEEccCCCEEEEecCCCcEEE
Q 022716          166 LTTGNAGCYCIAIDPMGRYFAVGSADS----LVSLWDISE-MLCVRTFTKL--EWPVRTISFSHTGDYIASASEDLFIDI  238 (293)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~l~~gs~d~----~i~iwd~~~-~~~~~~~~~~--~~~v~~l~~sp~~~~l~s~s~d~~i~i  238 (293)
                            .+....+++++.++++++.|+    +|+|||+++ ...+..+..+  ...+...-..++|.++++|+.|+.|++
T Consensus       216 ------~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~  289 (568)
T PTZ00420        216 ------NIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRY  289 (568)
T ss_pred             ------EEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEE
Confidence                  012334678888888877664    799999985 4444443222  223333334566899999999999999


Q ss_pred             EEcCCCCE--EEEEecCCCcceeEECCCCC
Q 022716          239 SNVHTGRT--VHQIPCRAAMNSVEWNPKYN  266 (293)
Q Consensus       239 w~~~~~~~--~~~~~~~~~i~~~~~sp~~~  266 (293)
                      |++..+..  +..+....+++.++|.|+..
T Consensus       290 ~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr~  319 (568)
T PTZ00420        290 YQHSLGSIRKVNEYKSCSPFRSFGFLPKQI  319 (568)
T ss_pred             EEccCCcEEeecccccCCCccceEEccccc
Confidence            99987643  22334556788999999653

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=2.1e-30  Score=194.86  Aligned_cols=240  Identities=20%  Similarity=0.280  Sum_probs=195.8

Q ss_pred             ccccccceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEe
Q 022716            7 PFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATAS   86 (293)
Q Consensus         7 ~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~   86 (293)
                      |.....+++|.||...|..++.+.|...|++|+.|..|.+||+.+..    ....+.+|.+.|+.+.|+.+ ...++||+
T Consensus        46 p~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGk----v~Rr~rgH~aqVNtV~fNee-sSVv~Sgs  120 (307)
T KOG0316|consen   46 PLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGK----VDRRFRGHLAQVNTVRFNEE-SSVVASGS  120 (307)
T ss_pred             ccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCe----eeeecccccceeeEEEecCc-ceEEEecc
Confidence            34445689999999999999999999999999999999999998642    33468999999999999865 67999999


Q ss_pred             CCCeEEEEeCCCCeee--eeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCE
Q 022716           87 GDKTVRLWDARSGKCS--QQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEM  163 (293)
Q Consensus        87 ~d~~i~vwd~~~~~~~--~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~  163 (293)
                      .|..+++||.++....  +.+. ....+.++...  +..+++|+-||+++.||+|..+....                  
T Consensus       121 fD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sD------------------  180 (307)
T KOG0316|consen  121 FDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSD------------------  180 (307)
T ss_pred             ccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecceeehh------------------
Confidence            9999999999876433  3221 33445555544  56899999999999999998654321                  


Q ss_pred             EEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCC--eeEEEEccCCCEEEEecCCCcEEEEEc
Q 022716          164 FFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWP--VRTISFSHTGDYIASASEDLFIDISNV  241 (293)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~--v~~l~~sp~~~~l~s~s~d~~i~iw~~  241 (293)
                          --..+++|+.|+++++..+.++.|+++++.|-.+++.++.+++|.+.  =..++++.....+++||+||.+++||+
T Consensus       181 ----y~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdL  256 (307)
T KOG0316|consen  181 ----YFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDL  256 (307)
T ss_pred             ----hcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEe
Confidence                12356789999999999999999999999999999999999998753  234567778889999999999999999


Q ss_pred             CCCCEEEEEecCCC--cceeEECCCCCeEEEEEcCC
Q 022716          242 HTGRTVHQIPCRAA--MNSVEWNPKYNLLAYAGDDK  275 (293)
Q Consensus       242 ~~~~~~~~~~~~~~--i~~~~~sp~~~~la~~~~d~  275 (293)
                      .....+..+...+.  +.+++++|...-|.++..-+
T Consensus       257 vd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~~  292 (307)
T KOG0316|consen  257 VDETQISKLSVVSTVIVTDLSCHPTMDDFITATGHG  292 (307)
T ss_pred             ccceeeeeeccCCceeEEeeecccCccceeEecCCc
Confidence            99998888876554  57899999987777666544

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.97  E-value=7e-31  Score=199.05  Aligned_cols=203  Identities=26%  Similarity=0.420  Sum_probs=179.1

Q ss_pred             CccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCC
Q 022716           18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDAR   97 (293)
Q Consensus        18 ~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~   97 (293)
                      .|+..|.+++|+.|.++|+||+.++.+||||+...   .....++.+|.+.|..+.|...+ +.++|++.|++||+||.+
T Consensus        98 ~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p---~App~E~~ghtg~Ir~v~wc~eD-~~iLSSadd~tVRLWD~r  173 (334)
T KOG0278|consen   98 EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRP---KAPPKEISGHTGGIRTVLWCHED-KCILSSADDKTVRLWDHR  173 (334)
T ss_pred             hhhheeeeEEecccchhhhccchHHHhhhhhccCC---CCCchhhcCCCCcceeEEEeccC-ceEEeeccCCceEEEEec
Confidence            78999999999999999999999999999999753   23344678999999999998764 577888999999999999


Q ss_pred             CCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEE
Q 022716           98 SGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIA  177 (293)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  177 (293)
                      ++..++.+++..++.++.++++|+++.+. ..+.|..||..++.+++..+.+..|                     .+..
T Consensus       174 Tgt~v~sL~~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~P~nV---------------------~SAS  231 (334)
T KOG0278|consen  174 TGTEVQSLEFNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKMPCNV---------------------ESAS  231 (334)
T ss_pred             cCcEEEEEecCCCCcceeeccCCCEEEEe-cCceeEEeccccccceeeccCcccc---------------------cccc
Confidence            99999999999999999999999877665 4678999999999988877665544                     3566


Q ss_pred             ECCCCCEEEEecCCCcEEEEeCCCCEEEEEe-eccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCE
Q 022716          178 IDPMGRYFAVGSADSLVSLWDISEMLCVRTF-TKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRT  246 (293)
Q Consensus       178 ~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~-~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~  246 (293)
                      ++|+...+++|+.|..++-||+.+++.+..+ ++|..||.++.|+|+|..-|+||+||+|+||....++.
T Consensus       232 L~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~  301 (334)
T KOG0278|consen  232 LHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKT  301 (334)
T ss_pred             ccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence            7899999999999999999999999998886 89999999999999999999999999999999876653

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.97  E-value=1e-31  Score=212.31  Aligned_cols=231  Identities=19%  Similarity=0.350  Sum_probs=186.1

Q ss_pred             cccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCC
Q 022716           20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG   99 (293)
Q Consensus        20 ~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~   99 (293)
                      .+.|.|+++  |+..+++|..|++|+|||..+.    .....+.||++.|.++.|.   ..+++||+.|.+|++||.+++
T Consensus       197 skgVYClQY--DD~kiVSGlrDnTikiWD~n~~----~c~~~L~GHtGSVLCLqyd---~rviisGSSDsTvrvWDv~tg  267 (499)
T KOG0281|consen  197 SKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSL----ECLKILTGHTGSVLCLQYD---ERVIVSGSSDSTVRVWDVNTG  267 (499)
T ss_pred             CCceEEEEe--cchhhhcccccCceEEeccccH----HHHHhhhcCCCcEEeeecc---ceEEEecCCCceEEEEeccCC
Confidence            368999997  4557999999999999998643    2233578999999999984   358999999999999999999


Q ss_pred             eeeeeeee-cCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEE
Q 022716          100 KCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAI  178 (293)
Q Consensus       100 ~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  178 (293)
                      +++..+.+ ...+..+.|+.  .++++++.|.++.+||+..........                 .+..+.+.+..+.|
T Consensus       268 e~l~tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rr-----------------VLvGHrAaVNvVdf  328 (499)
T KOG0281|consen  268 EPLNTLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRR-----------------VLVGHRAAVNVVDF  328 (499)
T ss_pred             chhhHHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHH-----------------HHhhhhhheeeecc
Confidence            98877654 45566788864  589999999999999997644211100                 01223344455555


Q ss_pred             CCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEecC-CCcc
Q 022716          179 DPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCR-AAMN  257 (293)
Q Consensus       179 ~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~-~~i~  257 (293)
                        +.+++++++.|.+|++|++.+++.++++.+|.-.|-++.+  .++++++||.|.+|++||.+.|..++.+..+ .-|+
T Consensus       329 --d~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvR  404 (499)
T KOG0281|consen  329 --DDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVR  404 (499)
T ss_pred             --ccceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhh
Confidence              4669999999999999999999999999999999998876  7899999999999999999999988877644 4589


Q ss_pred             eeEECCCCCeEEEEEcCCCCCCCCcceEEEEeeec
Q 022716          258 SVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN  292 (293)
Q Consensus       258 ~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~~  292 (293)
                      ++.|  +.+.|++|+-|        |++|||++..
T Consensus       405 ciRF--d~krIVSGaYD--------GkikvWdl~a  429 (499)
T KOG0281|consen  405 CIRF--DNKRIVSGAYD--------GKIKVWDLQA  429 (499)
T ss_pred             heee--cCceeeecccc--------ceEEEEeccc
Confidence            9999  56789999988        6788888754

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.97  E-value=2.2e-28  Score=202.60  Aligned_cols=260  Identities=21%  Similarity=0.379  Sum_probs=203.0

Q ss_pred             cceeecCccccEEEEEECCCCC-eEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCe
Q 022716           12 HSREYTGHKKKVHSVAWNCTGT-KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKT   90 (293)
Q Consensus        12 ~~~~~~~h~~~v~~l~~s~~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~   90 (293)
                      ..-+++||...|.++.|-|.-. +++|||.|++|-+|+=.+.    .-...+..|...|+++.|+|+ +.+++|++.||+
T Consensus       139 SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPF----KFk~s~r~HskFV~~VRysPD-G~~Fat~gsDgk  213 (603)
T KOG0318|consen  139 SVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPF----KFKSSFREHSKFVNCVRYSPD-GSRFATAGSDGK  213 (603)
T ss_pred             ccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCe----eeeecccccccceeeEEECCC-CCeEEEecCCcc
Confidence            4567899999999999998876 4899999999999963221    112245679999999999998 568999999999


Q ss_pred             EEEEeCCCCeeeeeee----ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceee----eeEEec---
Q 022716           91 VRLWDARSGKCSQQAE----LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVN----EIAWNM---  159 (293)
Q Consensus        91 i~vwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~----~v~~~~---  159 (293)
                      +.+||=++++.+..++    +.+.+..++|+||++++++++.|.++++||+.+.+..++..++..+.    .+.|..   
T Consensus       214 i~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~l  293 (603)
T KOG0318|consen  214 IYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHL  293 (603)
T ss_pred             EEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeE
Confidence            9999999998877665    45778899999999999999999999999999888877776654421    234531   


Q ss_pred             -----CCCE-----------EEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEE-----------EEEeec--
Q 022716          160 -----TGEM-----------FFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLC-----------VRTFTK--  210 (293)
Q Consensus       160 -----~~~~-----------~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~-----------~~~~~~--  210 (293)
                           .|.+           ..+..|+..+++++++|+++++.+|+.||.|.-|+...+..           +..+..  
T Consensus       294 ItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~  373 (603)
T KOG0318|consen  294 ITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASE  373 (603)
T ss_pred             EEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecC
Confidence                 1211           22344567799999999999999999999999999764321           100000  


Q ss_pred             --------------------------------------------------------------------cCCCeeEEEEcc
Q 022716          211 --------------------------------------------------------------------LEWPVRTISFSH  222 (293)
Q Consensus       211 --------------------------------------------------------------------~~~~v~~l~~sp  222 (293)
                                                                                          ......+++++|
T Consensus       374 ~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~  453 (603)
T KOG0318|consen  374 SGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSP  453 (603)
T ss_pred             CCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcC
Confidence                                                                                011134568899


Q ss_pred             CCCEEEEecCCCcEEEEEcCCCCE---EEEEecCCCcceeEECCCCCeEEEEEcCCC
Q 022716          223 TGDYIASASEDLFIDISNVHTGRT---VHQIPCRAAMNSVEWNPKYNLLAYAGDDKN  276 (293)
Q Consensus       223 ~~~~l~s~s~d~~i~iw~~~~~~~---~~~~~~~~~i~~~~~sp~~~~la~~~~d~~  276 (293)
                      ++..+|.|+.|+.+.||.+.....   .....++.+|++|++||++.+||++...+.
T Consensus       454 ~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rk  510 (603)
T KOG0318|consen  454 DGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRK  510 (603)
T ss_pred             CCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCc
Confidence            999999999999999999987542   345678899999999999999999987753

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.7e-30  Score=197.23  Aligned_cols=239  Identities=21%  Similarity=0.329  Sum_probs=189.7

Q ss_pred             cccEEEEEECCC-CCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCC
Q 022716           20 KKKVHSVAWNCT-GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS   98 (293)
Q Consensus        20 ~~~v~~l~~s~~-~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~   98 (293)
                      .+.+-.++|++. .+++++++.||++|+||+....   .....++.|...|.++.|++.....++++++|++|++|+...
T Consensus        60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s---~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r  136 (311)
T KOG0277|consen   60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPS---KPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNR  136 (311)
T ss_pred             ccceeEeeecCCCcceEEEEecCceEEEeccCCCC---cchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCC
Confidence            467888999975 4688999999999999976432   223457889999999999998888888999999999999887


Q ss_pred             CeeeeeeeecC-ceEEEEEcC-CCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEE
Q 022716           99 GKCSQQAELSG-ENINITYKP-DGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCI  176 (293)
Q Consensus        99 ~~~~~~~~~~~-~~~~~~~~~-~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  176 (293)
                      +..+.++..+. -+...+|+| ....+++++.|+++++||++..                    |..+.+..++..+.|.
T Consensus       137 ~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~--------------------gk~~~i~ah~~Eil~c  196 (311)
T KOG0277|consen  137 PNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSP--------------------GKFMSIEAHNSEILCC  196 (311)
T ss_pred             CcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCC--------------------CceeEEEeccceeEee
Confidence            77776665443 355788988 4678899999999999998753                    2222344556667777


Q ss_pred             EECCC-CCEEEEecCCCcEEEEeCCCC-EEEEEeeccCCCeeEEEEccCC-CEEEEecCCCcEEEEEcCCCC-EEEEEec
Q 022716          177 AIDPM-GRYFAVGSADSLVSLWDISEM-LCVRTFTKLEWPVRTISFSHTG-DYIASASEDLFIDISNVHTGR-TVHQIPC  252 (293)
Q Consensus       177 ~~~~~-~~~l~~gs~d~~i~iwd~~~~-~~~~~~~~~~~~v~~l~~sp~~-~~l~s~s~d~~i~iw~~~~~~-~~~~~~~  252 (293)
                      .|+.- .+.|++|+.|+.|+.||+++. .++.++.+|...|+.+.|||-. ..||++|.|-+++|||...+. .+.++.+
T Consensus       197 dw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~  276 (311)
T KOG0277|consen  197 DWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDH  276 (311)
T ss_pred             cccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhc
Confidence            77754 577899999999999999875 3566788999999999999975 578999999999999998654 3445555


Q ss_pred             CCC-cceeEECC-CCCeEEEEEcCCCCCCCC
Q 022716          253 RAA-MNSVEWNP-KYNLLAYAGDDKNKYQAD  281 (293)
Q Consensus       253 ~~~-i~~~~~sp-~~~~la~~~~d~~~~~~~  281 (293)
                      +.. +..+.||+ +..++|++|.|..+++|+
T Consensus       277 HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~  307 (311)
T KOG0277|consen  277 HTEFVCGLDWSLFDPGQVASTGWDELLYVWN  307 (311)
T ss_pred             cceEEeccccccccCceeeecccccceeeec
Confidence            544 67799998 568999999998777665

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=5.2e-30  Score=216.10  Aligned_cols=249  Identities=16%  Similarity=0.242  Sum_probs=208.6

Q ss_pred             eeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEE
Q 022716           14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL   93 (293)
Q Consensus        14 ~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~v   93 (293)
                      +.+..|...|.++.|+|...+++++-..|.|.||+.+.+.    ....+.-..-+|.+..|-+. .+.+++|+.|..|+|
T Consensus         7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqt----mVksfeV~~~PvRa~kfiaR-knWiv~GsDD~~IrV   81 (794)
T KOG0276|consen    7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQT----MVKSFEVSEVPVRAAKFIAR-KNWIVTGSDDMQIRV   81 (794)
T ss_pred             hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccce----eeeeeeecccchhhheeeec-cceEEEecCCceEEE
Confidence            4556688999999999999999999999999999987532    22234444667888888765 468999999999999


Q ss_pred             EeCCCCeeeeeeeec-CceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCC
Q 022716           94 WDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAG  172 (293)
Q Consensus        94 wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  172 (293)
                      |+..+++.+..++.+ ..+.+++.+|...++++++.|-+|++||-++.-...+                   .+..|..-
T Consensus        82 fnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~q-------------------tfeGH~Hy  142 (794)
T KOG0276|consen   82 FNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQ-------------------TFEGHEHY  142 (794)
T ss_pred             EecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeee-------------------EEcCcceE
Confidence            999999988888754 4567899999999999999999999999776432221                   23345556


Q ss_pred             EEEEEECCCC-CEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCC--CEEEEecCCCcEEEEEcCCCCEEEE
Q 022716          173 CYCIAIDPMG-RYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTG--DYIASASEDLFIDISNVHTGRTVHQ  249 (293)
Q Consensus       173 ~~~~~~~~~~-~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~--~~l~s~s~d~~i~iw~~~~~~~~~~  249 (293)
                      +.+++|.|.+ +.+|+++-|++|++|.+.+..+..++.+|+..|++++|-|-|  .+|+||++|.+++|||.++..++.+
T Consensus       143 VMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~T  222 (794)
T KOG0276|consen  143 VMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQT  222 (794)
T ss_pred             EEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHH
Confidence            7789999864 789999999999999999988889999999999999998755  6999999999999999999888888


Q ss_pred             Ee-cCCCcceeEECCCCCeEEEEEcCCCCCCCCcceEE
Q 022716          250 IP-CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFR  286 (293)
Q Consensus       250 ~~-~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~  286 (293)
                      +. |...|+.+.|+|.-.+|++||.|+.++||...+.|
T Consensus       223 LeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~  260 (794)
T KOG0276|consen  223 LEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYK  260 (794)
T ss_pred             hhcccccceEEEecCCCcEEEEecCCccEEEecCccee
Confidence            75 56679999999999999999999877777666554

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.97  E-value=1.8e-29  Score=201.37  Aligned_cols=250  Identities=22%  Similarity=0.322  Sum_probs=192.6

Q ss_pred             ccccceeecCccccEEEEEECC---CCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEE
Q 022716            9 KNLHSREYTGHKKKVHSVAWNC---TGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATA   85 (293)
Q Consensus         9 ~~~~~~~~~~h~~~v~~l~~s~---~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~   85 (293)
                      ++.+...+.||.++|.+++|--   ....|++||.|.++++|..+.............||...|.+++..+++ ..++||
T Consensus       133 ~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sg-tr~~Sg  211 (423)
T KOG0313|consen  133 KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSG-TRFCSG  211 (423)
T ss_pred             CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCC-CeEEee
Confidence            3456678899999999888853   234699999999999998875433222222345999999999988764 678899


Q ss_pred             eCCCeEEEEeCCCCe-------------------------eeeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccc
Q 022716           86 SGDKTVRLWDARSGK-------------------------CSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRK  139 (293)
Q Consensus        86 ~~d~~i~vwd~~~~~-------------------------~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~  139 (293)
                      +.|.++++|+..+..                         ++..++ +...+.++.|.+ ...+.+++.|.+|+.||+.+
T Consensus       212 S~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDlet  290 (423)
T KOG0313|consen  212 SWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLET  290 (423)
T ss_pred             cccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeec
Confidence            999999999932110                         011112 223455677876 67899999999999999987


Q ss_pred             cceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCC---EEEEEeeccCCCee
Q 022716          140 FKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM---LCVRTFTKLEWPVR  216 (293)
Q Consensus       140 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~---~~~~~~~~~~~~v~  216 (293)
                      ......+.                     ......|++.+|..++|++|+.|..|++||.+++   ...+++.+|.+.|.
T Consensus       291 g~~~~~~~---------------------~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVs  349 (423)
T KOG0313|consen  291 GGLKSTLT---------------------TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVS  349 (423)
T ss_pred             ccceeeee---------------------cCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhh
Confidence            66443322                     2345678999999999999999999999999764   34568899999999


Q ss_pred             EEEEccCCC-EEEEecCCCcEEEEEcCCCC-EEEEEe-cCCCcceeEECCCCCeEEEEEcCCCCCCCCc
Q 022716          217 TISFSHTGD-YIASASEDLFIDISNVHTGR-TVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNKYQADE  282 (293)
Q Consensus       217 ~l~~sp~~~-~l~s~s~d~~i~iw~~~~~~-~~~~~~-~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~  282 (293)
                      ++.|+|... +|++||.|+++++||+++.+ .+..+. +...|-++.|+. +.+|++||.|++++|...
T Consensus       350 svkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~-~~~IvSGGaD~~l~i~~~  417 (423)
T KOG0313|consen  350 SVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE-GGLIVSGGADNKLRIFKG  417 (423)
T ss_pred             heecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC-CceEEeccCcceEEEecc
Confidence            999999876 47999999999999999877 566654 456799999976 679999999987766544

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=5.6e-31  Score=206.62  Aligned_cols=242  Identities=20%  Similarity=0.309  Sum_probs=195.0

Q ss_pred             ecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCce----eEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716           16 YTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKV----KDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (293)
Q Consensus        16 ~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~----~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i   91 (293)
                      ..|.++.+.|..|||||++|++||.||.|.+|+........-    ..-.+..|.++|.++.|+.+ +..++||+.||.|
T Consensus       209 KFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRD-sEMlAsGsqDGkI  287 (508)
T KOG0275|consen  209 KFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRD-SEMLASGSQDGKI  287 (508)
T ss_pred             ecccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeeccc-HHHhhccCcCCcE
Confidence            347788999999999999999999999999999865321110    01135668899999999875 6789999999999


Q ss_pred             EEEeCCCCeeeeeee--ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecC
Q 022716           92 RLWDARSGKCSQQAE--LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG  169 (293)
Q Consensus        92 ~vwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  169 (293)
                      ++|.+.+|.|++.+.  +...+.++.|+.|+..+++++.|.++++--+++++.+++..                    .+
T Consensus       288 KvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfr--------------------GH  347 (508)
T KOG0275|consen  288 KVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFR--------------------GH  347 (508)
T ss_pred             EEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhc--------------------Cc
Confidence            999999999988775  44567899999999999999999999999998887765532                    23


Q ss_pred             CCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeecc--C-----------------------------------
Q 022716          170 NAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL--E-----------------------------------  212 (293)
Q Consensus       170 ~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~--~-----------------------------------  212 (293)
                      .+-+....|.++|.++++++.||+|++|+.++.+|+.+++..  +                                   
T Consensus       348 sSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvV  427 (508)
T KOG0275|consen  348 SSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVV  427 (508)
T ss_pred             cccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEE
Confidence            344556778899999999999999999999887766554321  1                                   


Q ss_pred             ----------CCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEec-CCCcceeEECCCCCeEEEEEcCCCCC
Q 022716          213 ----------WPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPC-RAAMNSVEWNPKYNLLAYAGDDKNKY  278 (293)
Q Consensus       213 ----------~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~-~~~i~~~~~sp~~~~la~~~~d~~~~  278 (293)
                                +..-+.+.||.|.++.+.++|+.++.+.+.+|+.-+.++- ...+..++.||..|.||+-+.|+-+.
T Consensus       428 rsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllK  504 (508)
T KOG0275|consen  428 RSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLK  504 (508)
T ss_pred             eeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhh
Confidence                      1122346789999999999999999999999998888764 44578899999999999999885433

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.97  E-value=1.6e-29  Score=200.54  Aligned_cols=244  Identities=20%  Similarity=0.308  Sum_probs=205.5

Q ss_pred             cceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (293)
Q Consensus        12 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i   91 (293)
                      ..-.++||...|..+++|+--.+|++++.|+.|+.||++.+..  +  ..+.||-..|.+++.+|.. +.|+||+.|.++
T Consensus       185 LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkv--I--R~YhGHlS~V~~L~lhPTl-dvl~t~grDst~  259 (460)
T KOG0285|consen  185 LKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKV--I--RHYHGHLSGVYCLDLHPTL-DVLVTGGRDSTI  259 (460)
T ss_pred             EEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhh--H--HHhccccceeEEEeccccc-eeEEecCCcceE
Confidence            3456789999999999999999999999999999999986432  1  2467999999999999975 689999999999


Q ss_pred             EEEeCCCCeeeeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCC
Q 022716           92 RLWDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGN  170 (293)
Q Consensus        92 ~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  170 (293)
                      |+||+++...+..+. +...+.++.+.|-+.++++|+.|++|++||++.++.+.                    .+..+.
T Consensus       260 RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~--------------------tlt~hk  319 (460)
T KOG0285|consen  260 RVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMI--------------------TLTHHK  319 (460)
T ss_pred             EEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeE--------------------eeeccc
Confidence            999999988777776 45567788888888899999999999999998766433                    234455


Q ss_pred             CCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEE
Q 022716          171 AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQI  250 (293)
Q Consensus       171 ~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~  250 (293)
                      ..+-+++.+|....+|+++.|+ |+-|++..+..+..+.+|..-|++++.+.|+ ++++|++.|.+.+||.++|......
T Consensus       320 ksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~  397 (460)
T KOG0285|consen  320 KSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRG  397 (460)
T ss_pred             ceeeEEecCCchhhhhccCCcc-ceeccCCccchhhccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccc
Confidence            6677899999999999999885 9999999998888899999999999998776 7889999999999999998654332


Q ss_pred             ---------ecCCCcceeEECCCCCeEEEEEcCCCCCCCCc
Q 022716          251 ---------PCRAAMNSVEWNPKYNLLAYAGDDKNKYQADE  282 (293)
Q Consensus       251 ---------~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~  282 (293)
                               .....|.+.+|...+..|++|..|++|.++.+
T Consensus       398 ~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~ke  438 (460)
T KOG0285|consen  398 QTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKE  438 (460)
T ss_pred             cccccCCccccccceeEEeecccCceEEeccCCcceEEEec
Confidence                     22346788999999999999999998877544

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=5.4e-29  Score=187.25  Aligned_cols=243  Identities=20%  Similarity=0.301  Sum_probs=193.3

Q ss_pred             cccceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCC
Q 022716           10 NLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDK   89 (293)
Q Consensus        10 ~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~   89 (293)
                      ....+.+..|+++|..+.|+-||++.+|++.|.+||+|+....    .......+|-..|..++.+.+ ...|++|+.|.
T Consensus         7 tkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg----~liktYsghG~EVlD~~~s~D-nskf~s~GgDk   81 (307)
T KOG0316|consen    7 TKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRG----ALIKTYSGHGHEVLDAALSSD-NSKFASCGGDK   81 (307)
T ss_pred             chhceeecccccceEEEEEccCCCEEEEcCCCceEEeeccccc----ceeeeecCCCceeeecccccc-ccccccCCCCc
Confidence            3455667899999999999999999999999999999987532    223356788888999887765 45789999999


Q ss_pred             eEEEEeCCCCeeeeeeeec-CceEEEEEcCCCCEEEEEeCCCeEEEEEccccc--eeeeecccceeeeeEEecCCCEEEE
Q 022716           90 TVRLWDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFK--PIHRRKFGYEVNEIAWNMTGEMFFL  166 (293)
Q Consensus        90 ~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~  166 (293)
                      .+.+||+.+|+..+.+..+ +++..++|..+...+++|+-|..+++||-|+..  |++..                    
T Consensus        82 ~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQil--------------------  141 (307)
T KOG0316|consen   82 AVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQIL--------------------  141 (307)
T ss_pred             eEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchh--------------------
Confidence            9999999999988887654 567789999999999999999999999987643  33221                    


Q ss_pred             ecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCE
Q 022716          167 TTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRT  246 (293)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~  246 (293)
                      ....+.+.++.+  .+..+++|+.||+++.||++.+....-.  ...||++++|+++++.+..++.|+++++-|-.+|+.
T Consensus       142 dea~D~V~Si~v--~~heIvaGS~DGtvRtydiR~G~l~sDy--~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGkl  217 (307)
T KOG0316|consen  142 DEAKDGVSSIDV--AEHEIVAGSVDGTVRTYDIRKGTLSSDY--FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKL  217 (307)
T ss_pred             hhhcCceeEEEe--cccEEEeeccCCcEEEEEeecceeehhh--cCCcceeEEecCCCCEEEEeeccceeeecccchhHH
Confidence            112234445554  4678999999999999999999755433  345899999999999999999999999999999998


Q ss_pred             EEEEecCCC---cceeEECCCCCeEEEEEcCCCCCCCC
Q 022716          247 VHQIPCRAA---MNSVEWNPKYNLLAYAGDDKNKYQAD  281 (293)
Q Consensus       247 ~~~~~~~~~---i~~~~~sp~~~~la~~~~d~~~~~~~  281 (293)
                      +..+..+..   -..+.++....++++|+.|+..|.|+
T Consensus       218 L~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wd  255 (307)
T KOG0316|consen  218 LKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWD  255 (307)
T ss_pred             HHHhcccccceeeeeeeecccceeEEeccCCceEEEEE
Confidence            766543321   23567888889999999986555443

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.97  E-value=4.3e-30  Score=206.90  Aligned_cols=262  Identities=20%  Similarity=0.283  Sum_probs=206.9

Q ss_pred             eeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEE
Q 022716           14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL   93 (293)
Q Consensus        14 ~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~v   93 (293)
                      ..+..|.+.++.+.|-++...|+||+.|..|++|++.......  ...+.|..++|+++.|.+++ ..+++++.|+.+++
T Consensus       169 ~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~--~~tLaGs~g~it~~d~d~~~-~~~iAas~d~~~r~  245 (459)
T KOG0288|consen  169 FVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSEL--ISTLAGSLGNITSIDFDSDN-KHVIAASNDKNLRL  245 (459)
T ss_pred             hhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhh--hhhhhccCCCcceeeecCCC-ceEEeecCCCceee
Confidence            3456789999999999998999999999999999987543222  12466778889999998875 56778999999999


Q ss_pred             EeCCCCeeeeeeee-cCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEE---------------
Q 022716           94 WDARSGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAW---------------  157 (293)
Q Consensus        94 wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~---------------  157 (293)
                      |++...+...++.. ...+.++.|......+++|+.|.++++||+.+..+.+...+...+++|+-               
T Consensus       246 Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~DkkvR  325 (459)
T KOG0288|consen  246 WNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVISGHFDKKVR  325 (459)
T ss_pred             eeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEecceeeeecccccceE
Confidence            99999887776654 45667777777666699999999999999998777766655555555543               


Q ss_pred             --ecC-CCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeecc----CCCeeEEEEccCCCEEEEe
Q 022716          158 --NMT-GEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL----EWPVRTISFSHTGDYIASA  230 (293)
Q Consensus       158 --~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~----~~~v~~l~~sp~~~~l~s~  230 (293)
                        +.. ..........+.++++..++++..|++.+.|.++.++|+++.+....+...    ...++.+.|||++.|+|+|
T Consensus       326 fwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAG  405 (459)
T KOG0288|consen  326 FWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAG  405 (459)
T ss_pred             EEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeec
Confidence              211 111112223357899999999999999999999999999998877776543    2358889999999999999


Q ss_pred             cCCCcEEEEEcCCCCEEEEEec-CC--CcceeEECCCCCeEEEEEcCCCCC
Q 022716          231 SEDLFIDISNVHTGRTVHQIPC-RA--AMNSVEWNPKYNLLAYAGDDKNKY  278 (293)
Q Consensus       231 s~d~~i~iw~~~~~~~~~~~~~-~~--~i~~~~~sp~~~~la~~~~d~~~~  278 (293)
                      |.||.|+||++.+++....+.. ..  .|++++|+|.|.+|++++.++...
T Consensus       406 S~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~  456 (459)
T KOG0288|consen  406 SADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVT  456 (459)
T ss_pred             cCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceE
Confidence            9999999999999998776643 22  599999999999999999875433

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.97  E-value=4.7e-29  Score=194.59  Aligned_cols=219  Identities=23%  Similarity=0.395  Sum_probs=176.9

Q ss_pred             eeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCC------------CC--CceeEEEeeCCcCCeeEEEEcCCCC
Q 022716           14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPH------------GH--GKVKDIELRGHADSVDQLCWDPKHA   79 (293)
Q Consensus        14 ~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~------------~~--~~~~~~~~~~h~~~i~~~~~~~~~~   79 (293)
                      ..++.|++++.+.+|||||.++||||.|-.|||.|++..            +.  .......+-.|.+.|+.+.|+|. .
T Consensus       106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr-e  184 (430)
T KOG0640|consen  106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR-E  184 (430)
T ss_pred             EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecch-h
Confidence            446799999999999999999999999999999998611            00  00122346679999999999997 4


Q ss_pred             CEEEEEeCCCeEEEEeCCCCeeeee---eeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeE
Q 022716           80 DLIATASGDKTVRLWDARSGKCSQQ---AELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIA  156 (293)
Q Consensus        80 ~~l~s~~~d~~i~vwd~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~  156 (293)
                      ..|+||+.|++|+++|.........   ++-..++.++.|+|.|.+|++|+.-.++++||+++.++.-...         
T Consensus       185 ~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsan---------  255 (430)
T KOG0640|consen  185 TILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSAN---------  255 (430)
T ss_pred             heEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecC---------
Confidence            6899999999999999865433222   2334567789999999999999999999999999876533211         


Q ss_pred             EecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeec-cC-CCeeEEEEccCCCEEEEecCCC
Q 022716          157 WNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK-LE-WPVRTISFSHTGDYIASASEDL  234 (293)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~-~~-~~v~~l~~sp~~~~l~s~s~d~  234 (293)
                        |+      ..+.+.+.++.+++.++..++|+.||.|+|||=-..+|++++.. |. ..|.+..|..+|+|+.+.+.|.
T Consensus       256 --Pd------~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS  327 (430)
T KOG0640|consen  256 --PD------DQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDS  327 (430)
T ss_pred             --cc------cccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcc
Confidence              11      12456788999999999999999999999999888888887754 54 4699999999999999999999


Q ss_pred             cEEEEEcCCCCEEEEE
Q 022716          235 FIDISNVHTGRTVHQI  250 (293)
Q Consensus       235 ~i~iw~~~~~~~~~~~  250 (293)
                      .+++|.+.+++.+..+
T Consensus       328 ~vkLWEi~t~R~l~~Y  343 (430)
T KOG0640|consen  328 TVKLWEISTGRMLKEY  343 (430)
T ss_pred             eeeeeeecCCceEEEE
Confidence            9999999888876544

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=7.1e-28  Score=180.52  Aligned_cols=252  Identities=21%  Similarity=0.345  Sum_probs=192.8

Q ss_pred             eeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCC-CceeEEEeeCCcCCeeEEEEcCC---CCCEEEEEeC-C
Q 022716           14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGH-GKVKDIELRGHADSVDQLCWDPK---HADLIATASG-D   88 (293)
Q Consensus        14 ~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~-~~~~~~~~~~h~~~i~~~~~~~~---~~~~l~s~~~-d   88 (293)
                      +.-+.|++.|.|.+|||+|..|+||+.|++|++.-+..... ..-...++..|.+.|..++|..+   ++.+|++++. |
T Consensus        83 kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagd  162 (350)
T KOG0641|consen   83 KRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGD  162 (350)
T ss_pred             eeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCc
Confidence            44467899999999999999999999999999976543221 12234567789999999999542   3456777654 7


Q ss_pred             CeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEec
Q 022716           89 KTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTT  168 (293)
Q Consensus        89 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  168 (293)
                      ..|.+=|...++..+.+..+...+-.-++.++..+++|+.|.+|+.||+|-...++.......        .+     .-
T Consensus       163 c~iy~tdc~~g~~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~--------~~-----gl  229 (350)
T KOG0641|consen  163 CKIYITDCGRGQGFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFH--------DG-----GL  229 (350)
T ss_pred             ceEEEeecCCCCcceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCccc--------CC-----Cc
Confidence            778888888887776665544444344667788999999999999999987665544321100        00     01


Q ss_pred             CCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCC--CE
Q 022716          169 GNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTG--RT  246 (293)
Q Consensus       169 ~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~--~~  246 (293)
                      ..+.+.+++++|.|++|++|-.|...-+||++.+++++.+..|...|+++.|+|...|+.+||.|..|++-|++.-  +.
T Consensus       230 essavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~e  309 (350)
T KOG0641|consen  230 ESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHE  309 (350)
T ss_pred             ccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhc
Confidence            1245678999999999999999999999999999999999999999999999999999999999999999998642  11


Q ss_pred             EE---EEecCCCcceeEECCCCCeEEEEEcCCCCC
Q 022716          247 VH---QIPCRAAMNSVEWNPKYNLLAYAGDDKNKY  278 (293)
Q Consensus       247 ~~---~~~~~~~i~~~~~sp~~~~la~~~~d~~~~  278 (293)
                      +.   .-.++.....+.|+|..--|.+.+.|+...
T Consensus       310 l~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~t  344 (350)
T KOG0641|consen  310 LPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTAT  344 (350)
T ss_pred             CceEEEEeccCceEEEEecCccceeeeccCcceEE
Confidence            11   124566788899999887788888887443

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.97  E-value=2.1e-28  Score=198.41  Aligned_cols=247  Identities=23%  Similarity=0.369  Sum_probs=203.5

Q ss_pred             cceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (293)
Q Consensus        12 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i   91 (293)
                      ....|.||...|+.+.|+|+...+++++.|..|++|.+....    .......|..+|+.+..+|. +++|++++.|+..
T Consensus       253 ~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s----~~~~~~~h~~~V~~ls~h~t-geYllsAs~d~~w  327 (506)
T KOG0289|consen  253 ILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS----EPTSSRPHEEPVTGLSLHPT-GEYLLSASNDGTW  327 (506)
T ss_pred             hhhhccCcceEEEEEEeccchhheeecCCcceEEeecccccc----CccccccccccceeeeeccC-CcEEEEecCCceE
Confidence            346689999999999999999999999999999999986432    22345689999999999997 4799999999999


Q ss_pred             EEEeCCCCeeeeeeeecC---ceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEec
Q 022716           92 RLWDARSGKCSQQAELSG---ENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTT  168 (293)
Q Consensus        92 ~vwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  168 (293)
                      .+.|++++.+........   ...+.+|+|||..+.+|..|+.+++||+.+......                    +..
T Consensus       328 ~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~--------------------Fpg  387 (506)
T KOG0289|consen  328 AFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAK--------------------FPG  387 (506)
T ss_pred             EEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCcccccc--------------------CCC
Confidence            999999998766544432   356789999999999999999999999987553322                    224


Q ss_pred             CCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccC-CCeeEEEEccCCCEEEEecCCCcEEEEEcCC--CC
Q 022716          169 GNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLE-WPVRTISFSHTGDYIASASEDLFIDISNVHT--GR  245 (293)
Q Consensus       169 ~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~-~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~--~~  245 (293)
                      +.+++..++|+.+|.+||++.+|+.|++||+++.+..+++.-.+ .++.+++|.+.|++|+.++.|-.|++++-.+  ..
T Consensus       388 ht~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~  467 (506)
T KOG0289|consen  388 HTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWT  467 (506)
T ss_pred             CCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccce
Confidence            67788999999999999999999999999999887777765443 4799999999999999999998888887544  34


Q ss_pred             EEEEEecCC-CcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeee
Q 022716          246 TVHQIPCRA-AMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE  291 (293)
Q Consensus       246 ~~~~~~~~~-~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~  291 (293)
                      ++..+..+. ..+.+.|..+-++++++|+|+.        +|||.++
T Consensus       468 ~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~--------l~~~a~~  506 (506)
T KOG0289|consen  468 EIKELADHSGLSTGVRFGEHAQYLASTSMDAI--------LRLYALT  506 (506)
T ss_pred             eeehhhhcccccceeeecccceEEeeccchhh--------eEEeecC
Confidence            555555444 6788999999999999999964        7888764

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.97  E-value=8.6e-30  Score=208.85  Aligned_cols=224  Identities=23%  Similarity=0.379  Sum_probs=181.8

Q ss_pred             ccceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCc-CCeeEEEEcCCCCCEEEEEeCCC
Q 022716           11 LHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHA-DSVDQLCWDPKHADLIATASGDK   89 (293)
Q Consensus        11 ~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~-~~i~~~~~~~~~~~~l~s~~~d~   89 (293)
                      .+.++|.||..+|.+++|+.+|..++|+|.|+.+++||++..   ...   ...|. ..++++.|+|++.+.+++|+.|+
T Consensus       249 ~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG---~~~---~~f~~~~~~~cvkf~pd~~n~fl~G~sd~  322 (503)
T KOG0282|consen  249 RCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETG---QVL---SRFHLDKVPTCVKFHPDNQNIFLVGGSDK  322 (503)
T ss_pred             ceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccc---eEE---EEEecCCCceeeecCCCCCcEEEEecCCC
Confidence            356889999999999999999999999999999999999853   211   12233 45789999999888999999999


Q ss_pred             eEEEEeCCCCeeeeeeeec-CceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecc--cceeeeeEEecCCCEEEE
Q 022716           90 TVRLWDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF--GYEVNEIAWNMTGEMFFL  166 (293)
Q Consensus        90 ~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~  166 (293)
                      .|+.||+++++.++.+..+ +.+..+.|-++|+++++.+.|+.+++|+.+...++.....  .+...++...|.+..+..
T Consensus       323 ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~a  402 (503)
T KOG0282|consen  323 KIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAA  402 (503)
T ss_pred             cEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehh
Confidence            9999999999977766543 4566899999999999999999999999887766554332  123344555555544433


Q ss_pred             ecCC--------------------------CCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEE
Q 022716          167 TTGN--------------------------AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISF  220 (293)
Q Consensus       167 ~~~~--------------------------~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~  220 (293)
                      .+..                          +-...+.|+|||++|++|+.||.+.+||.++...+..++.|..++..+.|
T Consensus       403 Qs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~w  482 (503)
T KOG0282|consen  403 QSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDW  482 (503)
T ss_pred             hccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEe
Confidence            3222                          12345899999999999999999999999999889999999999999999


Q ss_pred             ccCC-CEEEEecCCCcEEEEE
Q 022716          221 SHTG-DYIASASEDLFIDISN  240 (293)
Q Consensus       221 sp~~-~~l~s~s~d~~i~iw~  240 (293)
                      +|.. ..+|||+-||.|++|+
T Consensus       483 HP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  483 HPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             cCCCcceeEecccCceeEecC
Confidence            9974 5799999999999996

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=6e-28  Score=188.60  Aligned_cols=242  Identities=19%  Similarity=0.298  Sum_probs=194.9

Q ss_pred             ceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCC-CEEEEEeCCCeE
Q 022716           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHA-DLIATASGDKTV   91 (293)
Q Consensus        13 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~-~~l~s~~~d~~i   91 (293)
                      .-.|..|.++|++++.  ++.++||||.|-+|+|||+...    ...-.+..|.+.|+++.|.+.-+ ..|++|+.||.|
T Consensus        36 lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~----~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i  109 (362)
T KOG0294|consen   36 LFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKR----KQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHI  109 (362)
T ss_pred             cccccccccceeEEEe--cceeEeccCCCCcEEEEeccch----hhhcceeccccceEEEEecCCcchhheeeecCCCcE
Confidence            3456789999999996  5899999999999999999743    22234668999999999976432 367899999999


Q ss_pred             EEEeCCCCeeeeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCC
Q 022716           92 RLWDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGN  170 (293)
Q Consensus        92 ~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  170 (293)
                      .+|+...-.++..+. +.+.+..++.+|.++..++.+.|+.+++|++-.++.-...++......+.|.+.|+.+.+...+
T Consensus       110 ~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~  189 (362)
T KOG0294|consen  110 IIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRN  189 (362)
T ss_pred             EEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEecc
Confidence            999999988887776 4456788999999999999999999999999877766666666666779999999977655432


Q ss_pred             -------------------CCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEE--ccCCCEEEE
Q 022716          171 -------------------AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISF--SHTGDYIAS  229 (293)
Q Consensus       171 -------------------~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~--sp~~~~l~s  229 (293)
                                         ..+.|+.| -++..+++|.+|+.|.+||.....++..+.+|..+|.++.+  .|++.+|+|
T Consensus       190 ~i~i~q~d~A~v~~~i~~~~r~l~~~~-l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvT  268 (362)
T KOG0294|consen  190 KIDIYQLDNASVFREIENPKRILCATF-LDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVT  268 (362)
T ss_pred             EEEEEecccHhHhhhhhccccceeeee-cCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEE
Confidence                               12445444 35778999999999999999998889999999999999984  477899999


Q ss_pred             ecCCCcEEEEEcCCC-----CEEEEEecCCCcceeEE
Q 022716          230 ASEDLFIDISNVHTG-----RTVHQIPCRAAMNSVEW  261 (293)
Q Consensus       230 ~s~d~~i~iw~~~~~-----~~~~~~~~~~~i~~~~~  261 (293)
                      +|.||.|++||+...     ..+-.+....+++|+.-
T Consensus       269 aSSDG~I~vWd~~~~~k~~~~~l~e~n~~~RltCl~~  305 (362)
T KOG0294|consen  269 ASSDGFIKVWDIDMETKKRPTLLAELNTNVRLTCLRV  305 (362)
T ss_pred             eccCceEEEEEccccccCCcceeEEeecCCccceeee
Confidence            999999999999765     33444555666777653

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=5.7e-29  Score=209.88  Aligned_cols=235  Identities=21%  Similarity=0.293  Sum_probs=197.1

Q ss_pred             cccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCC
Q 022716           20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG   99 (293)
Q Consensus        20 ~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~   99 (293)
                      .-+|.+..|-+--+++++|+.|..||+|+....    .+...+.+|.+.|.+++.||+.+ +++|+|.|-+|++||-+..
T Consensus        55 ~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~----ekV~~FeAH~DyIR~iavHPt~P-~vLtsSDDm~iKlW~we~~  129 (794)
T KOG0276|consen   55 EVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTG----EKVKTFEAHSDYIRSIAVHPTLP-YVLTSSDDMTIKLWDWENE  129 (794)
T ss_pred             ccchhhheeeeccceEEEecCCceEEEEecccc----eeeEEeeccccceeeeeecCCCC-eEEecCCccEEEEeeccCc
Confidence            457778888777889999999999999998743    23346889999999999999865 7889999999999998765


Q ss_pred             -eeeeeeeecCc-eEEEEEcC-CCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEE
Q 022716          100 -KCSQQAELSGE-NINITYKP-DGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCI  176 (293)
Q Consensus       100 -~~~~~~~~~~~-~~~~~~~~-~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  176 (293)
                       .|.+.++.+.+ +++++|.| |...+++++-|+++++|.+.+..+..                    .+..|..++.|+
T Consensus       130 wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nf--------------------Tl~gHekGVN~V  189 (794)
T KOG0276|consen  130 WACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNF--------------------TLEGHEKGVNCV  189 (794)
T ss_pred             eeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCce--------------------eeeccccCcceE
Confidence             56667765554 67899998 45789999999999999987755443                    344566777888


Q ss_pred             EECCCC--CEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEec-C
Q 022716          177 AIDPMG--RYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPC-R  253 (293)
Q Consensus       177 ~~~~~~--~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~-~  253 (293)
                      ++-+-|  .+|++|++|.+|++||.++..|++++.+|..-|..+.|+|.=..++|||+||+++||+..+.++.+.+.. -
T Consensus       190 dyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gl  269 (794)
T KOG0276|consen  190 DYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGL  269 (794)
T ss_pred             EeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCC
Confidence            876644  6999999999999999999999999999999999999999999999999999999999999887766543 3


Q ss_pred             CCcceeEECCCCCeEEEEEcCCCCCC
Q 022716          254 AAMNSVEWNPKYNLLAYAGDDKNKYQ  279 (293)
Q Consensus       254 ~~i~~~~~sp~~~~la~~~~d~~~~~  279 (293)
                      .++.+|+-.+..+.+|.|.+.+.+.+
T Consensus       270 eRvW~I~~~k~~~~i~vG~Deg~i~v  295 (794)
T KOG0276|consen  270 ERVWCIAAHKGDGKIAVGFDEGSVTV  295 (794)
T ss_pred             ceEEEEeecCCCCeEEEeccCCcEEE
Confidence            57999999998888999987765543

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=3.6e-30  Score=204.34  Aligned_cols=258  Identities=18%  Similarity=0.256  Sum_probs=207.3

Q ss_pred             eecCccccEEEEEECCCC-CeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEE
Q 022716           15 EYTGHKKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL   93 (293)
Q Consensus        15 ~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~v   93 (293)
                      .+.||...|.|++=+|.. ..++||+.||.|+|||+...    .....+.+|.+.|..+++..   ..+++++.|.+|+.
T Consensus        61 ~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR----~~~~~f~AH~G~V~Gi~v~~---~~~~tvgdDKtvK~  133 (433)
T KOG0268|consen   61 SLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQR----ECIRTFKAHEGLVRGICVTQ---TSFFTVGDDKTVKQ  133 (433)
T ss_pred             hccccccccchhhcCcchhhhhhccccCceEEEEehhhh----hhhheeecccCceeeEEecc---cceEEecCCcceee
Confidence            457999999999999987 77899999999999999743    23346889999999999864   45789999999999


Q ss_pred             EeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccce-eeeeEEecCCCEEEEecCCCC
Q 022716           94 WDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYE-VNEIAWNMTGEMFFLTTGNAG  172 (293)
Q Consensus        94 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~  172 (293)
                      |.+.. .....+...+....+.-...+..++++++  .|.|||.+...|++...++.+ +.++.++|....++..+..+.
T Consensus       134 wk~~~-~p~~tilg~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDr  210 (433)
T KOG0268|consen  134 WKIDG-PPLHTILGKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDR  210 (433)
T ss_pred             eeccC-CcceeeeccccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCC
Confidence            98765 34455555555556665555667777764  689999998899988888765 677888888777666553321


Q ss_pred             ---------------------EEEEEECCCCCEEEEecCCCcEEEEeCCCC-EEEEEeeccCCCeeEEEEccCCCEEEEe
Q 022716          173 ---------------------CYCIAIDPMGRYFAVGSADSLVSLWDISEM-LCVRTFTKLEWPVRTISFSHTGDYIASA  230 (293)
Q Consensus       173 ---------------------~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~-~~~~~~~~~~~~v~~l~~sp~~~~l~s~  230 (293)
                                           ...|+|+|+.-.+++|++|-+++.||++.. +.+....+|...|.+++|||.|+-+++|
T Consensus       211 sIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efvsg  290 (433)
T KOG0268|consen  211 SIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSG  290 (433)
T ss_pred             ceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccc
Confidence                                 236899998888999999999999999865 4566778899999999999999999999


Q ss_pred             cCCCcEEEEEcCCCCEEEEEec--CCCcceeEECCCCCeEEEEEcCCCCCCCCc
Q 022716          231 SEDLFIDISNVHTGRTVHQIPC--RAAMNSVEWNPKYNLLAYAGDDKNKYQADE  282 (293)
Q Consensus       231 s~d~~i~iw~~~~~~~~~~~~~--~~~i~~~~~sp~~~~la~~~~d~~~~~~~~  282 (293)
                      |-|.+|+|+....++.-..+..  -..|.++.||-|.+++.+||+|+|++.|..
T Consensus       291 syDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka  344 (433)
T KOG0268|consen  291 SYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKA  344 (433)
T ss_pred             cccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeec
Confidence            9999999999988764433322  235899999999999999999987776643

>PTZ00421 coronin; Provisional

Probab=99.97  E-value=4.4e-27  Score=205.38  Aligned_cols=246  Identities=14%  Similarity=0.139  Sum_probs=183.1

Q ss_pred             ccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCC-------CCc--eeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCC
Q 022716           19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHG-------HGK--VKDIELRGHADSVDQLCWDPKHADLIATASGDK   89 (293)
Q Consensus        19 h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~-------~~~--~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~   89 (293)
                      |...|.....++++..+++++.+.....|+.....       .++  .....+.+|.+.|.+++|+|.+..+|++|+.|+
T Consensus        19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg   98 (493)
T PTZ00421         19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG   98 (493)
T ss_pred             ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence            45567777778888888888888888888754211       000  001236789999999999995567999999999


Q ss_pred             eEEEEeCCCCe-------eeeeee-ecCceEEEEEcCCC-CEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecC
Q 022716           90 TVRLWDARSGK-------CSQQAE-LSGENINITYKPDG-THIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMT  160 (293)
Q Consensus        90 ~i~vwd~~~~~-------~~~~~~-~~~~~~~~~~~~~~-~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~  160 (293)
                      +|++||+..+.       .+..+. +...+.+++|+|++ ..|++++.|++|++||+++......               
T Consensus        99 tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~---------------  163 (493)
T PTZ00421         99 TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEV---------------  163 (493)
T ss_pred             EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEE---------------
Confidence            99999997642       222333 33457789999985 6899999999999999987553322               


Q ss_pred             CCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCC-eeEEEEccCCCEEEEec----CCCc
Q 022716          161 GEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWP-VRTISFSHTGDYIASAS----EDLF  235 (293)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~-v~~l~~sp~~~~l~s~s----~d~~  235 (293)
                           +..+...+.+++|+|++.+|++++.|++|++||++++..+.++..|... +..+.|+|++..+++++    .|+.
T Consensus       164 -----l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~  238 (493)
T PTZ00421        164 -----IKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQ  238 (493)
T ss_pred             -----EcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCe
Confidence                 2235567889999999999999999999999999999888888888754 45677899888777654    5899


Q ss_pred             EEEEEcCCCCE-EEEEe--cCCCcceeEECCCCCeEEEEEc-CCCCCCCCcceEEEEeeec
Q 022716          236 IDISNVHTGRT-VHQIP--CRAAMNSVEWNPKYNLLAYAGD-DKNKYQADEGVFRIYGFEN  292 (293)
Q Consensus       236 i~iw~~~~~~~-~~~~~--~~~~i~~~~~sp~~~~la~~~~-d~~~~~~~~~~~~~~~~~~  292 (293)
                      |++||+.+... +....  ....+....|+|++++|+++|. |+        .+|+|++++
T Consensus       239 VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg--------~Iriwdl~~  291 (493)
T PTZ00421        239 IMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEG--------NIRCFELMN  291 (493)
T ss_pred             EEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCC--------eEEEEEeeC
Confidence            99999987543 33322  2234555679999999999885 64        556665543

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=1.5e-28  Score=211.20  Aligned_cols=264  Identities=15%  Similarity=0.250  Sum_probs=219.3

Q ss_pred             ceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEE
Q 022716           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (293)
Q Consensus        13 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~   92 (293)
                      .-++.||.+.|.++++|.+...++||+ .+.+++|+.+...  ++.  ++.  .+.+.+..|.|- ..++++|...|.+.
T Consensus       366 ~i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~k--ciR--Ti~--~~y~l~~~Fvpg-d~~Iv~G~k~Gel~  437 (888)
T KOG0306|consen  366 NIEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLK--CIR--TIT--CGYILASKFVPG-DRYIVLGTKNGELQ  437 (888)
T ss_pred             eeeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcc--eeE--Eec--cccEEEEEecCC-CceEEEeccCCceE
Confidence            355779999999999998887777765 5889999987532  221  121  236778888885 57899999999999


Q ss_pred             EEeCCCCeeeeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccce-------------eeeecccceeeeeEEe
Q 022716           93 LWDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKP-------------IHRRKFGYEVNEIAWN  158 (293)
Q Consensus        93 vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~-------------~~~~~~~~~~~~v~~~  158 (293)
                      ++|+.+.......+ +.+...+++..||++.+++|+.|.++++||..--..             .+...+..++-++..+
T Consensus       438 vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~S  517 (888)
T KOG0306|consen  438 VFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVS  517 (888)
T ss_pred             EEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEc
Confidence            99998887666554 556677899999999999999999999999642111             1233456678889999


Q ss_pred             cCCCEEEEe---------------------cCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeE
Q 022716          159 MTGEMFFLT---------------------TGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRT  217 (293)
Q Consensus       159 ~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~  217 (293)
                      |++.++.+.                     .|.-++.|+.++|+++.++|||.|.+|++|=++-|.|.+++.+|+..|.+
T Consensus       518 pdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~  597 (888)
T KOG0306|consen  518 PDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMS  597 (888)
T ss_pred             CCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeE
Confidence            998765532                     34567899999999999999999999999999999999999999999999


Q ss_pred             EEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEe-cCCCcceeEECCCCCeEEEEEcCCCCCCCCcce
Q 022716          218 ISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGV  284 (293)
Q Consensus       218 l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~-~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~  284 (293)
                      +.|-|....+.++|.|+.++-||......+..+. ++..|.+++-+|+|.+++++|.|++++.|+.+-
T Consensus       598 V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~td  665 (888)
T KOG0306|consen  598 VQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD  665 (888)
T ss_pred             EEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence            9999999999999999999999999988888875 567899999999999999999999988887754

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.1e-28  Score=215.28  Aligned_cols=241  Identities=16%  Similarity=0.249  Sum_probs=199.1

Q ss_pred             ecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEe
Q 022716           16 YTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWD   95 (293)
Q Consensus        16 ~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd   95 (293)
                      |....+.|..++|+|.-.+++++--.|.|++||.....    ..-.+..|.++|..+.|+|+. .+++|||.|-.|+||+
T Consensus         5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~t----li~rFdeHdGpVRgv~FH~~q-plFVSGGDDykIkVWn   79 (1202)
T KOG0292|consen    5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGT----LIDRFDEHDGPVRGVDFHPTQ-PLFVSGGDDYKIKVWN   79 (1202)
T ss_pred             hhcccccccceecCCCCCEEEEeecCceeeeehhhhhh----HHhhhhccCCccceeeecCCC-CeEEecCCccEEEEEe
Confidence            33456789999999999999999999999999987531    112467899999999999985 5899999999999999


Q ss_pred             CCCCeeeeeeeec-CceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEE
Q 022716           96 ARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCY  174 (293)
Q Consensus        96 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  174 (293)
                      .++.+|+.++..+ ..+..+.|++.-.++++++.|.+|++|+..+.+.+.                    .++.|+..+.
T Consensus        80 Yk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~ia--------------------vltGHnHYVM  139 (1202)
T KOG0292|consen   80 YKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIA--------------------VLTGHNHYVM  139 (1202)
T ss_pred             cccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEE--------------------EEecCceEEE
Confidence            9999998876544 557789999999999999999999999987765443                    3566777889


Q ss_pred             EEEECCCCCEEEEecCCCcEEEEeCCCCE-----------------------------EEEEeeccCCCeeEEEEccCCC
Q 022716          175 CIAIDPMGRYFAVGSADSLVSLWDISEML-----------------------------CVRTFTKLEWPVRTISFSHTGD  225 (293)
Q Consensus       175 ~~~~~~~~~~l~~gs~d~~i~iwd~~~~~-----------------------------~~~~~~~~~~~v~~l~~sp~~~  225 (293)
                      |..|+|....++++|-|.+|++||+...+                             .-..+.+|+-.|+-++|+|.-.
T Consensus       140 cAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp  219 (1202)
T KOG0292|consen  140 CAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP  219 (1202)
T ss_pred             eeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcc
Confidence            99999999999999999999999974210                             0124568888999999999999


Q ss_pred             EEEEecCCCcEEEEEcCCCCEE--EE-EecCCCcceeEECCCCCeEEEEEcCCCCCCCC
Q 022716          226 YIASASEDLFIDISNVHTGRTV--HQ-IPCRAAMNSVEWNPKYNLLAYAGDDKNKYQAD  281 (293)
Q Consensus       226 ~l~s~s~d~~i~iw~~~~~~~~--~~-~~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~  281 (293)
                      .+++|++|..|++|-....+.-  .+ ..|.+.|.++-|||+.+++.+.|.|+.+++||
T Consensus       220 liVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwD  278 (1202)
T KOG0292|consen  220 LIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWD  278 (1202)
T ss_pred             eEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEe
Confidence            9999999999999998765543  22 34567899999999999999999997444333

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.97  E-value=2.6e-29  Score=190.55  Aligned_cols=263  Identities=18%  Similarity=0.262  Sum_probs=205.1

Q ss_pred             eeecCccccEEEEEEC---CCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCe
Q 022716           14 REYTGHKKKVHSVAWN---CTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKT   90 (293)
Q Consensus        14 ~~~~~h~~~v~~l~~s---~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~   90 (293)
                      ....||..+|..++||   |+|-+|++++.||.=.+-+=+.    .-..-.+.+|++.|+..+.+.+ ....+|++.|-+
T Consensus         8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~t----gdwigtfeghkgavw~~~l~~n-a~~aasaaadft   82 (334)
T KOG0278|consen    8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDT----GDWIGTFEGHKGAVWSATLNKN-ATRAASAAADFT   82 (334)
T ss_pred             eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCC----CCcEEeeeccCcceeeeecCch-hhhhhhhcccch
Confidence            3678999999999998   4888999999999877643332    2233468899999999887643 456788999999


Q ss_pred             EEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccc--eeeeecccceeeeeEEecCCCEEEEec
Q 022716           91 VRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFK--PIHRRKFGYEVNEIAWNMTGEMFFLTT  168 (293)
Q Consensus        91 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~  168 (293)
                      .++||.-+|..+..+++...+..++|+.|.++|++|+.+..++++|++..+  +..-..+...|+.+.|.....-++-..
T Consensus        83 akvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSa  162 (334)
T KOG0278|consen   83 AKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSA  162 (334)
T ss_pred             hhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeec
Confidence            999999999988888888888999999999999999999999999997654  233334555667776655443332211


Q ss_pred             --------------------CCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEE
Q 022716          169 --------------------GNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIA  228 (293)
Q Consensus       169 --------------------~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~  228 (293)
                                          ...++.++.++++|++|.++. -+.|.+||.++...++.+. ....|.+-+.+|+...++
T Consensus       163 dd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~-gssV~Fwdaksf~~lKs~k-~P~nV~SASL~P~k~~fV  240 (334)
T KOG0278|consen  163 DDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAY-GSSVKFWDAKSFGLLKSYK-MPCNVESASLHPKKEFFV  240 (334)
T ss_pred             cCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEec-CceeEEeccccccceeecc-CccccccccccCCCceEE
Confidence                                224566778888888766654 4568888888877776653 345688889999999999


Q ss_pred             EecCCCcEEEEEcCCCCEEEE--EecCCCcceeEECCCCCeEEEEEcCCCCCCCCcc
Q 022716          229 SASEDLFIDISNVHTGRTVHQ--IPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEG  283 (293)
Q Consensus       229 s~s~d~~i~iw~~~~~~~~~~--~~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~  283 (293)
                      +|++|..++.+|..++..+..  ..+.++|.+|.|+|+|...|+||.|+.+++|+..
T Consensus       241 aGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~  297 (334)
T KOG0278|consen  241 AGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTT  297 (334)
T ss_pred             ecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEec
Confidence            999999999999999988765  4678899999999999999999998544444433

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.96  E-value=8e-28  Score=191.13  Aligned_cols=247  Identities=18%  Similarity=0.228  Sum_probs=199.7

Q ss_pred             cccceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCC
Q 022716           10 NLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDK   89 (293)
Q Consensus        10 ~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~   89 (293)
                      +-....|..|+++|.+++.+|+.++++||+.|....+|++....    ....+.+|++.|.++.|+.+ +.+|+||+-+|
T Consensus        54 DdS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge----~~~eltgHKDSVt~~~Fshd-gtlLATGdmsG  128 (399)
T KOG0296|consen   54 DDSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGE----FAGELTGHKDSVTCCSFSHD-GTLLATGDMSG  128 (399)
T ss_pred             ccceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCc----ceeEecCCCCceEEEEEccC-ceEEEecCCCc
Confidence            44567789999999999999999999999999999999987543    34568899999999999986 57999999999


Q ss_pred             eEEEEeCCCCeeeeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEec
Q 022716           90 TVRLWDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTT  168 (293)
Q Consensus        90 ~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  168 (293)
                      .|+||+..++.....+. --....-+.|+|.+..|++|+.||.+-+|.+.+....+                    .+..
T Consensus       129 ~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~k--------------------v~~G  188 (399)
T KOG0296|consen  129 KVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCK--------------------VMSG  188 (399)
T ss_pred             cEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceee--------------------EecC
Confidence            99999998887555443 22344568999999999999999999999987742221                    2345


Q ss_pred             CCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeecc-------------------------------------
Q 022716          169 GNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL-------------------------------------  211 (293)
Q Consensus       169 ~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~-------------------------------------  211 (293)
                      ++.++++=.|.|+|+.+++|..||+|++||++++.++..+...                                     
T Consensus       189 h~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv  268 (399)
T KOG0296|consen  189 HNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVV  268 (399)
T ss_pred             CCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEE
Confidence            6778888889999999999999999999999988665544310                                     


Q ss_pred             --------------CCCeeEEEEcc---CCCEEEEecCCCcEEEEEcCCCCEEEEEecCCCcceeEECCCCCeEEEEEcC
Q 022716          212 --------------EWPVRTISFSH---TGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDD  274 (293)
Q Consensus       212 --------------~~~v~~l~~sp---~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~d  274 (293)
                                    +..+.++.|.|   .=.+.|+|+.||+|.|||....+..+...+..+|..+.|-+ -.+|+++..+
T Consensus       269 ~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~  347 (399)
T KOG0296|consen  269 NCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACAN  347 (399)
T ss_pred             EecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeeccC
Confidence                          11112223333   33577999999999999999988888899999999999998 7799999999


Q ss_pred             CCCCCCCc
Q 022716          275 KNKYQADE  282 (293)
Q Consensus       275 ~~~~~~~~  282 (293)
                      +++++||-
T Consensus       348 g~v~~wDa  355 (399)
T KOG0296|consen  348 GKVRQWDA  355 (399)
T ss_pred             ceEEeeec
Confidence            88888875

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.96  E-value=8.2e-28  Score=194.97  Aligned_cols=238  Identities=21%  Similarity=0.362  Sum_probs=198.6

Q ss_pred             ccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCe
Q 022716           21 KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGK  100 (293)
Q Consensus        21 ~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~  100 (293)
                      ..+.++...|..+.++||+.|..+.++|...+   + ....++||...|..+.++|. ...+++++.|..|++|......
T Consensus       220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~---q-~l~~~~Gh~kki~~v~~~~~-~~~v~~aSad~~i~vws~~~~s  294 (506)
T KOG0289|consen  220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSN---Q-ILATLKGHTKKITSVKFHKD-LDTVITASADEIIRVWSVPLSS  294 (506)
T ss_pred             CCeeEEeecCCCCcceecCCCCceEEEecchh---h-hhhhccCcceEEEEEEeccc-hhheeecCCcceEEeecccccc
Confidence            46888888888789999999999999997643   2 22358899999999999997 4678899999999999987665


Q ss_pred             eeeee-eecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEEC
Q 022716          101 CSQQA-ELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAID  179 (293)
Q Consensus       101 ~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  179 (293)
                      +.... .+.+++..+..+|.|.||++++.|++....|+++...+......                  ..+-..++++||
T Consensus       295 ~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~------------------~s~v~~ts~~fH  356 (506)
T KOG0289|consen  295 EPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDE------------------TSDVEYTSAAFH  356 (506)
T ss_pred             CccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeec------------------cccceeEEeeEc
Confidence            54433 35667788999999999999999999999999886654332110                  112346789999


Q ss_pred             CCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEecC--CCcc
Q 022716          180 PMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCR--AAMN  257 (293)
Q Consensus       180 ~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~--~~i~  257 (293)
                      |||.++.+|+.|+.|+|||++.+..+..|.+|..+|.+++|+.+|=|||++++|+.|++||++..+..++++..  .+++
T Consensus       357 pDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~  436 (506)
T KOG0289|consen  357 PDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVN  436 (506)
T ss_pred             CCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccce
Confidence            99999999999999999999998888899999999999999999999999999999999999988777666543  3699


Q ss_pred             eeEECCCCCeEEEEEcCCCCCCCCcceEEEEeee
Q 022716          258 SVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE  291 (293)
Q Consensus       258 ~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~  291 (293)
                      ++.|.+.|.+|+.+|.|          ++||.+.
T Consensus       437 s~~fD~SGt~L~~~g~~----------l~Vy~~~  460 (506)
T KOG0289|consen  437 SLSFDQSGTYLGIAGSD----------LQVYICK  460 (506)
T ss_pred             eEEEcCCCCeEEeecce----------eEEEEEe
Confidence            99999999999999876          6666654

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.96  E-value=1.8e-29  Score=199.60  Aligned_cols=245  Identities=20%  Similarity=0.315  Sum_probs=184.8

Q ss_pred             CcCcccccc----cceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCC
Q 022716            3 ESSIPFKNL----HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKH   78 (293)
Q Consensus         3 ~~~~~~~~~----~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~   78 (293)
                      +..|..|+.    +.+.++||.+.|.|++|.  .+.|++||+|.+|++||+....    ....+.+|-..|..+.|+   
T Consensus       216 DnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge----~l~tlihHceaVLhlrf~---  286 (499)
T KOG0281|consen  216 DNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGE----PLNTLIHHCEAVLHLRFS---  286 (499)
T ss_pred             cCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCc----hhhHHhhhcceeEEEEEe---
Confidence            445565553    346789999999999984  5699999999999999998542    122466899999999986   


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCeeee---ee-eecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeee
Q 022716           79 ADLIATASGDKTVRLWDARSGKCSQ---QA-ELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNE  154 (293)
Q Consensus        79 ~~~l~s~~~d~~i~vwd~~~~~~~~---~~-~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~  154 (293)
                      ...++|++.|.++.+||+.......   .+ .+...+..+.|+  .+++++++.|.++++|++.+...++...       
T Consensus       287 ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~-------  357 (499)
T KOG0281|consen  287 NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLN-------  357 (499)
T ss_pred             CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehhhh-------
Confidence            3589999999999999997654221   11 123344556664  5799999999999999998876554322       


Q ss_pred             eEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCC
Q 022716          155 IAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDL  234 (293)
Q Consensus       155 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~  234 (293)
                                   .+.-++-|+  -..++++++|++|++|++||+..|.+++.+.+|+.-|.++.|  |.+.+++|+.||
T Consensus       358 -------------gHkRGIACl--QYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF--d~krIVSGaYDG  420 (499)
T KOG0281|consen  358 -------------GHKRGIACL--QYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDG  420 (499)
T ss_pred             -------------cccccceeh--hccCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee--cCceeeeccccc
Confidence                         122233333  346899999999999999999999999999999999999999  677899999999


Q ss_pred             cEEEEEcCCCCEEE----------EEecCCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeeec
Q 022716          235 FIDISNVHTGRTVH----------QIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN  292 (293)
Q Consensus       235 ~i~iw~~~~~~~~~----------~~~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~~  292 (293)
                      +|++||+..+...+          ...+.+.|..+.|  |.-+|++++-|.        ++-||+|.+
T Consensus       421 kikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHdd--------tILiWdFl~  478 (499)
T KOG0281|consen  421 KIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDD--------TILIWDFLN  478 (499)
T ss_pred             eEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCC--------eEEEEEcCC
Confidence            99999998764321          1234456777888  555677777663        566777765

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=8.8e-28  Score=197.32  Aligned_cols=239  Identities=17%  Similarity=0.262  Sum_probs=194.5

Q ss_pred             ecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEe
Q 022716           16 YTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWD   95 (293)
Q Consensus        16 ~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd   95 (293)
                      +.-.+..|.++.|-.||+.|+.|+..|.|++||..+    +.....+.+|+.++..+.|+|.+...|++|+.|+.+++||
T Consensus        64 ~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~----r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d  139 (487)
T KOG0310|consen   64 FSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS----RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWD  139 (487)
T ss_pred             HHhhccceeEEEeecCCeEEEccCCcCcEEEecccc----HHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEE
Confidence            445567899999999999999999999999999542    2233356789999999999999888999999999999999


Q ss_pred             CCCCeeeeeee-ecCceEEEEEcCC-CCEEEEEeCCCeEEEEEcccc-ceeeeecccceeeeeEEecCCCEEEEecCCCC
Q 022716           96 ARSGKCSQQAE-LSGENINITYKPD-GTHIAVGNRDDELTILDVRKF-KPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAG  172 (293)
Q Consensus        96 ~~~~~~~~~~~-~~~~~~~~~~~~~-~~~l~~~~~d~~i~l~d~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  172 (293)
                      +.+......+. +...+.+.+++|. +..+++|+.||+|++||+|.. ....+..++.                     +
T Consensus       140 ~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~---------------------p  198 (487)
T KOG0310|consen  140 LSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGC---------------------P  198 (487)
T ss_pred             cCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCC---------------------c
Confidence            98876432222 3456778889885 457899999999999999986 4444444433                     4


Q ss_pred             EEEEEECCCCCEEEEecCCCcEEEEeCCCC-EEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEe
Q 022716          173 CYCIAIDPMGRYFAVGSADSLVSLWDISEM-LCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP  251 (293)
Q Consensus       173 ~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~-~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~  251 (293)
                      +-.+.+-|.|..+|+++. +.+++||+-++ ..+..+..|...|+|+++..+++.|++||.|+.++++|+.+.+.++.+.
T Consensus       199 Ve~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~  277 (487)
T KOG0310|consen  199 VESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK  277 (487)
T ss_pred             eeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeee
Confidence            445666788888888874 47999999855 4444555599999999999999999999999999999998899999999


Q ss_pred             cCCCcceeEECCCCCeEEEEEcCCCCCCC
Q 022716          252 CRAAMNSVEWNPKYNLLAYAGDDKNKYQA  280 (293)
Q Consensus       252 ~~~~i~~~~~sp~~~~la~~~~d~~~~~~  280 (293)
                      ..++|-+++.+|++..++.|-.|+-+-+.
T Consensus       278 ~~~pvLsiavs~dd~t~viGmsnGlv~~r  306 (487)
T KOG0310|consen  278 YPGPVLSIAVSPDDQTVVIGMSNGLVSIR  306 (487)
T ss_pred             cccceeeEEecCCCceEEEecccceeeee
Confidence            99999999999999999999888755443

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.96  E-value=1.1e-27  Score=186.05  Aligned_cols=221  Identities=21%  Similarity=0.299  Sum_probs=179.3

Q ss_pred             eecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEE
Q 022716           15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLW   94 (293)
Q Consensus        15 ~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vw   94 (293)
                      .++||+++|+.+.|.+|++.++++|.|.+++.||.+...    ...+.++|.+.|+.+.-...+..++.|++.|+++++|
T Consensus        85 ~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~----~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~  160 (338)
T KOG0265|consen   85 VLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGK----RIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLW  160 (338)
T ss_pred             eeccccceeEeeeeccCCCEEEEecCCceEEEEecccce----eeehhccccceeeecCccccCCeEEEecCCCceEEEE
Confidence            357999999999999999999999999999999998532    3346789999999988655667789999999999999


Q ss_pred             eCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeec-ccceeeeeEEecCC------------
Q 022716           95 DARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTG------------  161 (293)
Q Consensus        95 d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~-~~~~~~~v~~~~~~------------  161 (293)
                      |+++..+.+.++...+..++.|..++..+.+|+-|+.|++||+|....+.... +.-.|..+..++.+            
T Consensus       161 D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tv  240 (338)
T KOG0265|consen  161 DIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTV  240 (338)
T ss_pred             eecccchhhccccceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceE
Confidence            99998888887777888899999999999999999999999998766554432 22223333322222            


Q ss_pred             ------------CEEE-EecCC----CCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCC
Q 022716          162 ------------EMFF-LTTGN----AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTG  224 (293)
Q Consensus       162 ------------~~~~-~~~~~----~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~  224 (293)
                                  +.+. ...+.    ......+++|+++.+..|+.|..+++||......+..+.+|...|++++|+|..
T Consensus       241 rvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e  320 (338)
T KOG0265|consen  241 RVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTE  320 (338)
T ss_pred             EEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCC
Confidence                        2111 11111    123456899999999999999999999998888899999999999999999999


Q ss_pred             CEEEEecCCCcEEEE
Q 022716          225 DYIASASEDLFIDIS  239 (293)
Q Consensus       225 ~~l~s~s~d~~i~iw  239 (293)
                      ..+.+++.|.+|++=
T Consensus       321 ~iils~~sdk~i~lg  335 (338)
T KOG0265|consen  321 PIILSCSSDKTIYLG  335 (338)
T ss_pred             cEEEEeccCceeEee
Confidence            999999999998864

>PTZ00420 coronin; Provisional

Probab=99.96  E-value=3.1e-26  Score=201.28  Aligned_cols=219  Identities=15%  Similarity=0.138  Sum_probs=164.9

Q ss_pred             EeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCee--------eeeee-ec
Q 022716           38 GSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKC--------SQQAE-LS  108 (293)
Q Consensus        38 ~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~--------~~~~~-~~  108 (293)
                      |+.++.+++|+....    .....+.+|.+.|.+++|+|....+|+||+.|+.|++||+.++..        ...+. +.
T Consensus        50 GG~~gvI~L~~~~r~----~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~  125 (568)
T PTZ00420         50 GGLIGAIRLENQMRK----PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHK  125 (568)
T ss_pred             CCceeEEEeeecCCC----ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCC
Confidence            667889999987542    223467899999999999997678999999999999999975421        11222 34


Q ss_pred             CceEEEEEcCCCCEE-EEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEE
Q 022716          109 GENINITYKPDGTHI-AVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAV  187 (293)
Q Consensus       109 ~~~~~~~~~~~~~~l-~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  187 (293)
                      ..+.+++|+|++..+ ++++.|++|++||+++.......                     .+...+.+++|+|+|.+|++
T Consensus       126 ~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i---------------------~~~~~V~SlswspdG~lLat  184 (568)
T PTZ00420        126 KKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQI---------------------NMPKKLSSLKWNIKGNLLSG  184 (568)
T ss_pred             CcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEE---------------------ecCCcEEEEEECCCCCEEEE
Confidence            567789999998765 68899999999999876533221                     12345788999999999999


Q ss_pred             ecCCCcEEEEeCCCCEEEEEeeccCCCeeE-----EEEccCCCEEEEecCCC----cEEEEEcCC-CCEEEEEecCCCcc
Q 022716          188 GSADSLVSLWDISEMLCVRTFTKLEWPVRT-----ISFSHTGDYIASASEDL----FIDISNVHT-GRTVHQIPCRAAMN  257 (293)
Q Consensus       188 gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~-----l~~sp~~~~l~s~s~d~----~i~iw~~~~-~~~~~~~~~~~~i~  257 (293)
                      ++.|+.|+|||++++..+.++.+|...+.+     ..|++++.+|++++.|+    .|+|||+.. ++.+..+..+....
T Consensus       185 ~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~  264 (568)
T PTZ00420        185 TCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASA  264 (568)
T ss_pred             EecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCcc
Confidence            999999999999999999899999876543     34568999999887664    799999985 55565555544443


Q ss_pred             ee---EECCCCCeEEEEEcCCCCCCCC
Q 022716          258 SV---EWNPKYNLLAYAGDDKNKYQAD  281 (293)
Q Consensus       258 ~~---~~sp~~~~la~~~~d~~~~~~~  281 (293)
                      .+   -..+++.++++|+.|+++++|+
T Consensus       265 ~L~p~~D~~tg~l~lsGkGD~tIr~~e  291 (568)
T PTZ00420        265 PLIPHYDESTGLIYLIGKGDGNCRYYQ  291 (568)
T ss_pred             ceEEeeeCCCCCEEEEEECCCeEEEEE
Confidence            33   3355688899998886555443

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=6.3e-28  Score=209.93  Aligned_cols=218  Identities=23%  Similarity=0.334  Sum_probs=174.6

Q ss_pred             cccccceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeC
Q 022716            8 FKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASG   87 (293)
Q Consensus         8 ~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~   87 (293)
                      |...+.+.|.||.+.|.+|.||.++ +|+|+|.|.+||+|++...     ..++.-.|++.|+|++|+|.+.++|+||+-
T Consensus       357 f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~-----~CL~~F~HndfVTcVaFnPvDDryFiSGSL  430 (712)
T KOG0283|consen  357 FSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRK-----ECLKVFSHNDFVTCVAFNPVDDRYFISGSL  430 (712)
T ss_pred             ccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCc-----ceeeEEecCCeeEEEEecccCCCcEeeccc
Confidence            5566778899999999999999765 8999999999999998743     334566899999999999999999999999


Q ss_pred             CCeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEe
Q 022716           88 DKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLT  167 (293)
Q Consensus        88 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  167 (293)
                      |+.+|||++...+.......+..+++++|.|||+..++|+.+|.+++|+++..+.......       ......    -.
T Consensus       431 D~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I-------~~~~~K----k~  499 (712)
T KOG0283|consen  431 DGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHI-------RLHNKK----KK  499 (712)
T ss_pred             ccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeE-------eeccCc----cc
Confidence            9999999998877777777888899999999999999999999999999887664433211       000000    00


Q ss_pred             cCCCCEEEEEECCCC-CEEEEecCCCcEEEEeCCCCEEEEEeeccCC--CeeEEEEccCCCEEEEecCCCcEEEEEcCC
Q 022716          168 TGNAGCYCIAIDPMG-RYFAVGSADSLVSLWDISEMLCVRTFTKLEW--PVRTISFSHTGDYIASASEDLFIDISNVHT  243 (293)
Q Consensus       168 ~~~~~~~~~~~~~~~-~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~--~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~  243 (293)
                      . ...|+.+-+.|.. ..|++.+.|..|+|||.++...+..|+++..  .-..-.|+.||++++++++|..|+||+...
T Consensus       500 ~-~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~  577 (712)
T KOG0283|consen  500 Q-GKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDS  577 (712)
T ss_pred             c-CceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence            1 1146666666543 3688889999999999987777788887654  334567999999999999999999999743

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=1e-26  Score=181.21  Aligned_cols=259  Identities=23%  Similarity=0.434  Sum_probs=187.1

Q ss_pred             ecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEE-cCCCCCEEEEEeCCCeEEEE
Q 022716           16 YTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW-DPKHADLIATASGDKTVRLW   94 (293)
Q Consensus        16 ~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~-~~~~~~~l~s~~~d~~i~vw   94 (293)
                      -.+|+.-|+|+.|++.|+++||++.|++|+|||.+.....=......+.|.+.|..+.| +|+-++.+++++.|++++||
T Consensus         9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW   88 (361)
T KOG2445|consen    9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW   88 (361)
T ss_pred             ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence            46899999999999999999999999999999975433222334468899999999999 77778899999999999999


Q ss_pred             eCCCC--ee-----eee---eeecCceEEEEEcCC--CCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCC
Q 022716           95 DARSG--KC-----SQQ---AELSGENINITYKPD--GTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGE  162 (293)
Q Consensus        95 d~~~~--~~-----~~~---~~~~~~~~~~~~~~~--~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~  162 (293)
                      .-...  ++     ...   ....+.+..+.|.|.  |-.|++++.||.+++|+......+....+..+++.+. +|.  
T Consensus        89 EE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~-~pp--  165 (361)
T KOG2445|consen   89 EEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVI-DPP--  165 (361)
T ss_pred             eecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhcc-CCc--
Confidence            76311  11     111   123566788999885  6688999999999999976543333322222222111 011  


Q ss_pred             EEEEecCCCCEEEEEECCC---CCEEEEecCC-----CcEEEEeCC----CCEEEEEeeccCCCeeEEEEccCC----CE
Q 022716          163 MFFLTTGNAGCYCIAIDPM---GRYFAVGSAD-----SLVSLWDIS----EMLCVRTFTKLEWPVRTISFSHTG----DY  226 (293)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~---~~~l~~gs~d-----~~i~iwd~~----~~~~~~~~~~~~~~v~~l~~sp~~----~~  226 (293)
                          .....++.|+.++|.   ...+|+|+.+     +.+.||...    +...+.++.+|..+|+.|+|+|+-    ..
T Consensus       166 ----~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~  241 (361)
T KOG2445|consen  166 ----GKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHL  241 (361)
T ss_pred             ----ccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceee
Confidence                122345667777764   3567877766     588999764    334566788899999999999973    57


Q ss_pred             EEEecCCCcEEEEEcCCCC-----------------EE---EEEe-cCCCcceeEECCCCCeEEEEEcCCCCCCCCc
Q 022716          227 IASASEDLFIDISNVHTGR-----------------TV---HQIP-CRAAMNSVEWNPKYNLLAYAGDDKNKYQADE  282 (293)
Q Consensus       227 l~s~s~d~~i~iw~~~~~~-----------------~~---~~~~-~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~  282 (293)
                      ||+++.|| |+||.+..-.                 .+   ..+. |...+..+.|+-.|..|+++|+||-++.|..
T Consensus       242 lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWka  317 (361)
T KOG2445|consen  242 LAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKA  317 (361)
T ss_pred             EEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhh
Confidence            99999999 9999987311                 11   2232 4558999999999999999999975555544

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.96  E-value=7.8e-27  Score=208.04  Aligned_cols=255  Identities=20%  Similarity=0.287  Sum_probs=197.0

Q ss_pred             eecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCC------C-C------c-eeEEEeeCCcCCeeEEEEcCCCCC
Q 022716           15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHG------H-G------K-VKDIELRGHADSVDQLCWDPKHAD   80 (293)
Q Consensus        15 ~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~------~-~------~-~~~~~~~~h~~~i~~~~~~~~~~~   80 (293)
                      ....|.+.|.|+.|+|||.+||+||.|+.|.||+.....      . +      . .....+.+|...|.++.|+|+ ..
T Consensus        64 ~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~-~~  142 (942)
T KOG0973|consen   64 TMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPD-DS  142 (942)
T ss_pred             eeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCC-cc
Confidence            345799999999999999999999999999999987310      0 0      0 123457899999999999996 57


Q ss_pred             EEEEEeCCCeEEEEeCCCCeeeeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEec
Q 022716           81 LIATASGDKTVRLWDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNM  159 (293)
Q Consensus        81 ~l~s~~~d~~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~  159 (293)
                      +|+|++.|.+|.+||.++.++...+. +.+.+..+.|.|-|+++++-+.|+++++|++.+....+...-+++       .
T Consensus       143 ~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~-------~  215 (942)
T KOG0973|consen  143 LLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFE-------E  215 (942)
T ss_pred             EEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchh-------h
Confidence            99999999999999999988877776 456788999999999999999999999999766444333221110       0


Q ss_pred             CCCEEEEecCCCCEEEEEECCCCCEEEEecCC----CcEEEEeCCCCEEEEEeeccCCCeeEEEEccC-----CC-----
Q 022716          160 TGEMFFLTTGNAGCYCIAIDPMGRYFAVGSAD----SLVSLWDISEMLCVRTFTKLEWPVRTISFSHT-----GD-----  225 (293)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d----~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~-----~~-----  225 (293)
                             ........-+.|+|||.+|++..+-    .++.|.+-.+...-..+.+|..++..++|+|.     .+     
T Consensus       216 -------~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~  288 (942)
T KOG0973|consen  216 -------SPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTST  288 (942)
T ss_pred             -------CCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCcc
Confidence                   0001123456788899888887542    36888888888777889999999999999982     11     


Q ss_pred             -------EEEEecCCCcEEEEEcCCCCEEEEEe--cCCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeeec
Q 022716          226 -------YIASASEDLFIDISNVHTGRTVHQIP--CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN  292 (293)
Q Consensus       226 -------~l~s~s~d~~i~iw~~~~~~~~~~~~--~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~~  292 (293)
                             .+|+||.|+.|.||.....+.+....  ...+|.+++|+|||-.|..+|.|+        ++.+.+||+
T Consensus       289 ~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DG--------tV~~i~Fee  356 (942)
T KOG0973|consen  289 QPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDG--------TVALIHFEE  356 (942)
T ss_pred             CCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCC--------eEEEEEcch
Confidence                   57999999999999998777654432  245799999999999999999995        455555553

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=3.6e-26  Score=178.16  Aligned_cols=246  Identities=19%  Similarity=0.263  Sum_probs=186.7

Q ss_pred             cccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCC
Q 022716           20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG   99 (293)
Q Consensus        20 ~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~   99 (293)
                      ...|+++.|+|.+..|+.+++||++++||+....    ... .-.|..++.+.+|.+.  ..+++|+-||.|+++|+.++
T Consensus        13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~----l~~-~~~~~~plL~c~F~d~--~~~~~G~~dg~vr~~Dln~~   85 (323)
T KOG1036|consen   13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANS----LKL-KFKHGAPLLDCAFADE--STIVTGGLDGQVRRYDLNTG   85 (323)
T ss_pred             hhceeeEEEcCcCCcEEEEeccCcEEEEeccchh----hhh-heecCCceeeeeccCC--ceEEEeccCceEEEEEecCC
Confidence            4689999999999999999999999999997541    111 2258889999999863  56889999999999999998


Q ss_pred             eeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCC---------
Q 022716          100 KCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGN---------  170 (293)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---------  170 (293)
                      .......+...+.++.+.+....+++|+.|++|++||.|..........+..|.++  +..++.+++.+.+         
T Consensus        86 ~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~--~v~g~~LvVg~~~r~v~iyDLR  163 (323)
T KOG1036|consen   86 NEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCM--DVSGNRLVVGTSDRKVLIYDLR  163 (323)
T ss_pred             cceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEE--eccCCEEEEeecCceEEEEEcc
Confidence            87666667778889999988889999999999999999974443333222222222  2233333332211         


Q ss_pred             --------------CCEEEEEECCCCCEEEEecCCCcEEEEeCCCC----EEEEEeecc---------CCCeeEEEEccC
Q 022716          171 --------------AGCYCIAIDPMGRYFAVGSADSLVSLWDISEM----LCVRTFTKL---------EWPVRTISFSHT  223 (293)
Q Consensus       171 --------------~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~----~~~~~~~~~---------~~~v~~l~~sp~  223 (293)
                                    -.+-|+++.|++.-+++++-||.|.+=..+..    ..-..|+-|         -.||++|+|+|-
T Consensus       164 n~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~  243 (323)
T KOG1036|consen  164 NLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPI  243 (323)
T ss_pred             cccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccc
Confidence                          12458888898888899999998877444332    112223322         248999999999


Q ss_pred             CCEEEEecCCCcEEEEEcCCCCEEEEEec-CCCcceeEECCCCCeEEEEEcC
Q 022716          224 GDYIASASEDLFIDISNVHTGRTVHQIPC-RAAMNSVEWNPKYNLLAYAGDD  274 (293)
Q Consensus       224 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~-~~~i~~~~~sp~~~~la~~~~d  274 (293)
                      .+.||||+.||.|.+||....+.+.++.- ..+|.+++|+-+|..||.|+.-
T Consensus       244 ~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~sy  295 (323)
T KOG1036|consen  244 HGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASSY  295 (323)
T ss_pred             cceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEech
Confidence            99999999999999999999888877753 4679999999999999999864

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.96  E-value=1.6e-25  Score=183.79  Aligned_cols=223  Identities=31%  Similarity=0.520  Sum_probs=184.8

Q ss_pred             ceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEE
Q 022716           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (293)
Q Consensus        13 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~   92 (293)
                      ...+.+|...+.++.|+|+++.|++++.||.|++|++....    ....+..|...+.++.|+++ ..++++++.|+.++
T Consensus        44 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~----~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~i~  118 (289)
T cd00200          44 LRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGE----CVRTLTGHTSYVSSVAFSPD-GRILSSSSRDKTIK  118 (289)
T ss_pred             EEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCccc----ceEEEeccCCcEEEEEEcCC-CCEEEEecCCCeEE
Confidence            35677899999999999999999999999999999997531    22345688889999999987 56888887899999


Q ss_pred             EEeCCCCeeeeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecc-cceeeeeEEecCCCEEEEecC-
Q 022716           93 LWDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF-GYEVNEIAWNMTGEMFFLTTG-  169 (293)
Q Consensus        93 vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~-  169 (293)
                      +||+.+++....+. ....+.++.++|++.++++++.++.+.+||++..++...... ...+..+.|++.+..+++... 
T Consensus       119 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~  198 (289)
T cd00200         119 VWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSD  198 (289)
T ss_pred             EEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCC
Confidence            99999877766655 345678899999988888888899999999987766555443 346788888887755544332 


Q ss_pred             --------------------CCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEE
Q 022716          170 --------------------NAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIAS  229 (293)
Q Consensus       170 --------------------~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s  229 (293)
                                          ...+.+++++|++.++++++.|+.|++||+.++.....+..|...+.+++|+|++++|++
T Consensus       199 ~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  278 (289)
T cd00200         199 GTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLAS  278 (289)
T ss_pred             CcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEE
Confidence                                235778999999999999998999999999988888888888889999999999999999


Q ss_pred             ecCCCcEEEEE
Q 022716          230 ASEDLFIDISN  240 (293)
Q Consensus       230 ~s~d~~i~iw~  240 (293)
                      ++.|+.+++|+
T Consensus       279 ~~~d~~i~iw~  289 (289)
T cd00200         279 GSADGTIRIWD  289 (289)
T ss_pred             ecCCCeEEecC
Confidence            99999999996

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.96  E-value=2e-26  Score=201.81  Aligned_cols=235  Identities=25%  Similarity=0.444  Sum_probs=194.7

Q ss_pred             ecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEe
Q 022716           16 YTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWD   95 (293)
Q Consensus        16 ~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd   95 (293)
                      +.||.+.|.+++|..-++.|++|+.|.++|+||..+..    ....+.+|...|.++...+   .++++|+.|.+|++|+
T Consensus       245 l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~----C~~~l~gh~stv~~~~~~~---~~~~sgs~D~tVkVW~  317 (537)
T KOG0274|consen  245 LVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGE----CTHSLQGHTSSVRCLTIDP---FLLVSGSRDNTVKVWD  317 (537)
T ss_pred             ccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCc----EEEEecCCCceEEEEEccC---ceEeeccCCceEEEEe
Confidence            78999999999998778899999999999999976532    3345779999999998653   4788899999999999


Q ss_pred             CCCCeeeeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEE
Q 022716           96 ARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCY  174 (293)
Q Consensus        96 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  174 (293)
                      +.++.++.... +.+.+.++...  +..+++|+.|++|++||++..+.++.                    +..|...++
T Consensus       318 v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~s--------------------l~gH~~~V~  375 (537)
T KOG0274|consen  318 VTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKS--------------------LSGHTGRVY  375 (537)
T ss_pred             ccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeee--------------------ecCCcceEE
Confidence            99999988887 66777788776  78999999999999999997776654                    334667788


Q ss_pred             EEEECCCCCEEEEecCCCcEEEEeCCCC-EEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEecC
Q 022716          175 CIAIDPMGRYFAVGSADSLVSLWDISEM-LCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCR  253 (293)
Q Consensus       175 ~~~~~~~~~~l~~gs~d~~i~iwd~~~~-~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~  253 (293)
                      ++.+.+. ..+++|+.|++|++||+++. +++.++.+|..-+..+.  ..+++|++++.|+.|++||..+++.++.+..+
T Consensus       376 sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~--~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~  452 (537)
T KOG0274|consen  376 SLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLL--LRDNFLVSSSADGTIKLWDAEEGECLRTLEGR  452 (537)
T ss_pred             EEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcccccccc--cccceeEeccccccEEEeecccCceeeeeccC
Confidence            8877666 89999999999999999999 89999999988776554  47889999999999999999999999888763


Q ss_pred             --CCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeeec
Q 022716          254 --AAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN  292 (293)
Q Consensus       254 --~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~~  292 (293)
                        ..|..+++.  ...++.++.|        +.+++|++++
T Consensus       453 ~~~~v~~l~~~--~~~il~s~~~--------~~~~l~dl~~  483 (537)
T KOG0274|consen  453 HVGGVSALALG--KEEILCSSDD--------GSVKLWDLRS  483 (537)
T ss_pred             CcccEEEeecC--cceEEEEecC--------CeeEEEeccc
Confidence              567777765  4567777766        4566666653

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.96  E-value=5.8e-27  Score=187.13  Aligned_cols=207  Identities=24%  Similarity=0.392  Sum_probs=172.2

Q ss_pred             ecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCC---------------------CCceeEEEeeCCcCCeeEEEE
Q 022716           16 YTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHG---------------------HGKVKDIELRGHADSVDQLCW   74 (293)
Q Consensus        16 ~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~---------------------~~~~~~~~~~~h~~~i~~~~~   74 (293)
                      ..||++.|.+++..++|.++++||.|.+++||+.+...                     ..+...+.+.||..+|.++.|
T Consensus       189 ~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w  268 (423)
T KOG0313|consen  189 CRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVW  268 (423)
T ss_pred             hcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEE
Confidence            34999999999999999999999999999999943211                     011223468899999999999


Q ss_pred             cCCCCCEEEEEeCCCeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeee
Q 022716           75 DPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNE  154 (293)
Q Consensus        75 ~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~  154 (293)
                      .+  ...++|+++|.+|+.||+.++.+...........++.++|..++|++|+.|..+++||.|+..-.-          
T Consensus       269 ~d--~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~----------  336 (423)
T KOG0313|consen  269 SD--ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSV----------  336 (423)
T ss_pred             cC--CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCce----------
Confidence            86  467899999999999999999988888878888899999999999999999999999998753100          


Q ss_pred             eEEecCCCEEEEecCCCCEEEEEECCCCC-EEEEecCCCcEEEEeCCCCE-EEEEeeccCCCeeEEEEccCCCEEEEecC
Q 022716          155 IAWNMTGEMFFLTTGNAGCYCIAIDPMGR-YFAVGSADSLVSLWDISEML-CVRTFTKLEWPVRTISFSHTGDYIASASE  232 (293)
Q Consensus       155 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~gs~d~~i~iwd~~~~~-~~~~~~~~~~~v~~l~~sp~~~~l~s~s~  232 (293)
                      +       ..-+..|..-+.++.++|... .|++|+.||++++||++... ++..+.+|...|.++.|+ ++.++++|+.
T Consensus       337 v-------~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGa  408 (423)
T KOG0313|consen  337 V-------SQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGA  408 (423)
T ss_pred             e-------EEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccC
Confidence            0       112345566677888888764 58999999999999999876 889999999999999996 5779999999


Q ss_pred             CCcEEEEEcC
Q 022716          233 DLFIDISNVH  242 (293)
Q Consensus       233 d~~i~iw~~~  242 (293)
                      |.+|+|+...
T Consensus       409 D~~l~i~~~~  418 (423)
T KOG0313|consen  409 DNKLRIFKGS  418 (423)
T ss_pred             cceEEEeccc
Confidence            9999998653

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=1.9e-26  Score=195.64  Aligned_cols=236  Identities=22%  Similarity=0.375  Sum_probs=188.5

Q ss_pred             ccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeC-CcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCC
Q 022716           19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG-HADSVDQLCWDPKHADLIATASGDKTVRLWDAR   97 (293)
Q Consensus        19 h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~-h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~   97 (293)
                      +...|+++.|+++|..|+.|..+|.|.|||.......    ..+.+ |...|.+++|+   ...+.+|+.|+.|..+|++
T Consensus       216 ~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~----~~~~~~h~~rvg~laW~---~~~lssGsr~~~I~~~dvR  288 (484)
T KOG0305|consen  216 GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKT----RTLRGSHASRVGSLAWN---SSVLSSGSRDGKILNHDVR  288 (484)
T ss_pred             CCCceEEEEECCCCCEEEEeecCCeEEEEehhhcccc----ccccCCcCceeEEEecc---CceEEEecCCCcEEEEEEe
Confidence            3789999999999999999999999999998754321    23445 99999999997   3578899999999999998


Q ss_pred             CCeeeee-ee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEE
Q 022716           98 SGKCSQQ-AE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYC  175 (293)
Q Consensus        98 ~~~~~~~-~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  175 (293)
                      ..+.... +. +...+..+.|++|++++++|+.|+.+.+||.....+.                    ..+..+.+.+.+
T Consensus       289 ~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~--------------------~~~~~H~aAVKA  348 (484)
T KOG0305|consen  289 ISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPK--------------------FTFTEHTAAVKA  348 (484)
T ss_pred             cchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCcccc--------------------EEEeccceeeeE
Confidence            7765443 33 3445667999999999999999999999998554443                    334455666777


Q ss_pred             EEECCC-CCEEEEe--cCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEec--CCCcEEEEEcCCCCEEEEE
Q 022716          176 IAIDPM-GRYFAVG--SADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASAS--EDLFIDISNVHTGRTVHQI  250 (293)
Q Consensus       176 ~~~~~~-~~~l~~g--s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s--~d~~i~iw~~~~~~~~~~~  250 (293)
                      ++|+|- ...||+|  +.|++|++||..++.++..+ .....|.+|.|++..+-|+++.  .++.|.||+..+.+.+..+
T Consensus       349 ~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~v-dtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l  427 (484)
T KOG0305|consen  349 LAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSV-DTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAEL  427 (484)
T ss_pred             eeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccc-ccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeee
Confidence            777774 4667776  57999999999999888765 3446899999999987776653  5678999999997777665


Q ss_pred             -ecCCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEee
Q 022716          251 -PCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGF  290 (293)
Q Consensus       251 -~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~  290 (293)
                       .|..+|-.+++||+|..+++|+.|.        ++|+|++
T Consensus       428 ~gH~~RVl~la~SPdg~~i~t~a~DE--------Tlrfw~~  460 (484)
T KOG0305|consen  428 LGHTSRVLYLALSPDGETIVTGAADE--------TLRFWNL  460 (484)
T ss_pred             cCCcceeEEEEECCCCCEEEEecccC--------cEEeccc
Confidence             4566799999999999999999984        5666654

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=8.9e-27  Score=188.02  Aligned_cols=226  Identities=17%  Similarity=0.243  Sum_probs=172.9

Q ss_pred             ceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEE
Q 022716           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (293)
Q Consensus        13 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~   92 (293)
                      .+++.||..+|..+.||||+++|++++.|..+++||+.....-.   ..-.+|...+.+++|.|++ ..+++|+.|+.+.
T Consensus       262 ~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~---~y~~~~~~S~~sc~W~pDg-~~~V~Gs~dr~i~  337 (519)
T KOG0293|consen  262 KKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRH---LYPSGLGFSVSSCAWCPDG-FRFVTGSPDRTII  337 (519)
T ss_pred             eeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhh---hcccCcCCCcceeEEccCC-ceeEecCCCCcEE
Confidence            56778999999999999999999999999999999998643211   1223455778999999985 5688999999999


Q ss_pred             EEeCCCCeeeeeee-e-cCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCC
Q 022716           93 LWDARSGKCSQQAE-L-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGN  170 (293)
Q Consensus        93 vwd~~~~~~~~~~~-~-~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  170 (293)
                      .||++... ....+ . ...+..++.++||+++++.+.|..+++++...............+..+..+.++.+..+.-..
T Consensus       338 ~wdlDgn~-~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~  416 (519)
T KOG0293|consen  338 MWDLDGNI-LGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQD  416 (519)
T ss_pred             EecCCcch-hhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEccc
Confidence            99987543 22222 1 134668999999999999999999999998765544444445556666655555544432211


Q ss_pred             CC-----------------------EEEEEEC-CCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCC-
Q 022716          171 AG-----------------------CYCIAID-PMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGD-  225 (293)
Q Consensus       171 ~~-----------------------~~~~~~~-~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~-  225 (293)
                      ..                       +.--+|. .+..++++||+|+.|+||+..++..+..+.+|...|++++|+|... 
T Consensus       417 qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~  496 (519)
T KOG0293|consen  417 QEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPE  496 (519)
T ss_pred             CeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHH
Confidence            10                       1111232 3558999999999999999999999999999999999999999765 


Q ss_pred             EEEEecCCCcEEEEEcCC
Q 022716          226 YIASASEDLFIDISNVHT  243 (293)
Q Consensus       226 ~l~s~s~d~~i~iw~~~~  243 (293)
                      .+|+||+||+|+||....
T Consensus       497 m~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  497 MFASASDDGTIRIWGPSD  514 (519)
T ss_pred             HhhccCCCCeEEEecCCc
Confidence            689999999999998764

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=1.4e-25  Score=172.11  Aligned_cols=204  Identities=23%  Similarity=0.383  Sum_probs=164.9

Q ss_pred             EEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCC---eeeeeee--ecCceEEEEEcCCCCEEEEEeCCCeEEE
Q 022716           60 IELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG---KCSQQAE--LSGENINITYKPDGTHIAVGNRDDELTI  134 (293)
Q Consensus        60 ~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~---~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~d~~i~l  134 (293)
                      ..+++|.+.+..++|+|-.+.+|+||+.|..|++|+...+   .|...+.  +.-.+.+++|+|.|++|++++-|.++.+
T Consensus         8 ~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~I   87 (312)
T KOG0645|consen    8 QKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVI   87 (312)
T ss_pred             EeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEE
Confidence            3578999999999999964568999999999999998753   3333321  3345678999999999999999999999


Q ss_pred             EEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCC---CCEEEEEeecc
Q 022716          135 LDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDIS---EMLCVRTFTKL  211 (293)
Q Consensus       135 ~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~---~~~~~~~~~~~  211 (293)
                      |.=....        +++          .-.+..++..+.|++|+++|++||+++.|+.|.||.+.   ..++...+++|
T Consensus        88 w~k~~~e--------fec----------v~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~H  149 (312)
T KOG0645|consen   88 WKKEDGE--------FEC----------VATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEH  149 (312)
T ss_pred             eecCCCc--------eeE----------EeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccc
Confidence            9733211        000          12345667788999999999999999999999999986   35677888999


Q ss_pred             CCCeeEEEEccCCCEEEEecCCCcEEEEEcCCC---CEEEEEec-CCCcceeEECCCCCeEEEEEcCCCCCCCC
Q 022716          212 EWPVRTISFSHTGDYIASASEDLFIDISNVHTG---RTVHQIPC-RAAMNSVEWNPKYNLLAYAGDDKNKYQAD  281 (293)
Q Consensus       212 ~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~---~~~~~~~~-~~~i~~~~~sp~~~~la~~~~d~~~~~~~  281 (293)
                      ...|..+.|+|...+|+++|.|++|++|.-..+   ....++.. ...|.+++|+|.|+.|+++++|+++.+|-
T Consensus       150 tqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~  223 (312)
T KOG0645|consen  150 TQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWR  223 (312)
T ss_pred             cccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeee
Confidence            999999999999999999999999999988743   34556654 44899999999999999999997666554

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=2.1e-27  Score=201.15  Aligned_cols=253  Identities=19%  Similarity=0.300  Sum_probs=199.4

Q ss_pred             CccccEE---EEEECC-CCCeEEEEeCCCcEEEeecCCCCCC--ceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716           18 GHKKKVH---SVAWNC-TGTKLASGSVDQTARVWHIEPHGHG--KVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (293)
Q Consensus        18 ~h~~~v~---~l~~s~-~~~~l~s~~~dg~v~iw~~~~~~~~--~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i   91 (293)
                      +|...|.   .+..+. .+++|.|||.||.|++|++......  ......++.|.+-|+.+..... ++.|+|+|.|-+|
T Consensus        19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~-~~tlIS~SsDtTV   97 (735)
T KOG0308|consen   19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGN-GKTLISASSDTTV   97 (735)
T ss_pred             hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcC-CCceEEecCCceE
Confidence            5555565   666664 4556999999999999998643221  2223456789999998887654 4578899999999


Q ss_pred             EEEeCCCC--eeeeee-eecCceEEEEE-cCCCCEEEEEeCCCeEEEEEccccce--eeeecccceeeeeEEecCCCEEE
Q 022716           92 RLWDARSG--KCSQQA-ELSGENINITY-KPDGTHIAVGNRDDELTILDVRKFKP--IHRRKFGYEVNEIAWNMTGEMFF  165 (293)
Q Consensus        92 ~vwd~~~~--~~~~~~-~~~~~~~~~~~-~~~~~~l~~~~~d~~i~l~d~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~  165 (293)
                      ++|+...+  -|...+ .+...+.++++ .++...+++|+-|+.|.+||++....  +..... ..++          ..
T Consensus        98 K~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~-~t~~----------sl  166 (735)
T KOG0308|consen   98 KVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNN-VTVN----------SL  166 (735)
T ss_pred             EEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccc-cccc----------cC
Confidence            99998766  344444 35567788888 78888999999999999999986532  111100 0000          01


Q ss_pred             EecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCC
Q 022716          166 LTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGR  245 (293)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~  245 (293)
                      ..+...+++++|.++.+..+++|+.++.+++||.+++..+..+.+|..-|+.+..++||+.++++|.||+|++||+...+
T Consensus       167 ~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQr  246 (735)
T KOG0308|consen  167 GSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQR  246 (735)
T ss_pred             CCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccc
Confidence            11445679999999999999999999999999999999998999999999999999999999999999999999999999


Q ss_pred             EEEEEe-cCCCcceeEECCCCCeEEEEEcCCCCCCCCc
Q 022716          246 TVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNKYQADE  282 (293)
Q Consensus       246 ~~~~~~-~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~  282 (293)
                      .+..+. +...+.++.-+|+-.++-+|+.|++++--+.
T Consensus       247 Cl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl  284 (735)
T KOG0308|consen  247 CLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDL  284 (735)
T ss_pred             eeeeEEeccCceEEEeeCCCcceEEecCCCCcEEeccc
Confidence            888765 4556899999999999999999998876544

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.95  E-value=4.7e-26  Score=185.70  Aligned_cols=247  Identities=23%  Similarity=0.378  Sum_probs=185.6

Q ss_pred             ecCccccEEEEEECCCCCe-EEEEeCCCcEEEeecCCCCCC------ceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCC
Q 022716           16 YTGHKKKVHSVAWNCTGTK-LASGSVDQTARVWHIEPHGHG------KVKDIELRGHADSVDQLCWDPKHADLIATASGD   88 (293)
Q Consensus        16 ~~~h~~~v~~l~~s~~~~~-l~s~~~dg~v~iw~~~~~~~~------~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d   88 (293)
                      .--|.+.|..+.+-|+... +|+++..+.|.|||.......      ....+.+.+|.+.-+.++|++.....|++++.|
T Consensus       120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d  199 (422)
T KOG0264|consen  120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDD  199 (422)
T ss_pred             eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCC
Confidence            3468899999999998865 567788999999998754321      123357889999888999999887889999999


Q ss_pred             CeEEEEeCCCCee----e---eeeeec-CceEEEEEcCCC-CEEEEEeCCCeEEEEEcccc--ceeeeecccceeeeeEE
Q 022716           89 KTVRLWDARSGKC----S---QQAELS-GENINITYKPDG-THIAVGNRDDELTILDVRKF--KPIHRRKFGYEVNEIAW  157 (293)
Q Consensus        89 ~~i~vwd~~~~~~----~---~~~~~~-~~~~~~~~~~~~-~~l~~~~~d~~i~l~d~~~~--~~~~~~~~~~~~~~v~~  157 (293)
                      ++|++||+.....    +   ..+..+ ..+-.++|+|-. ..+++++.|+.+.|||+|+.  ++.+             
T Consensus       200 ~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~-------------  266 (422)
T KOG0264|consen  200 HTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSH-------------  266 (422)
T ss_pred             CcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcc-------------
Confidence            9999999965532    1   122222 334458888744 56788889999999999962  2211             


Q ss_pred             ecCCCEEEEecCCCCEEEEEECCC-CCEEEEecCCCcEEEEeCCCC-EEEEEeeccCCCeeEEEEccCC-CEEEEecCCC
Q 022716          158 NMTGEMFFLTTGNAGCYCIAIDPM-GRYFAVGSADSLVSLWDISEM-LCVRTFTKLEWPVRTISFSHTG-DYIASASEDL  234 (293)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~gs~d~~i~iwd~~~~-~~~~~~~~~~~~v~~l~~sp~~-~~l~s~s~d~  234 (293)
                             ....+.+.+.|++|+|- +..||+||.|++|.+||+++. .++.++.+|+..|..|.|||.. ..||+++.|+
T Consensus       267 -------~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~  339 (422)
T KOG0264|consen  267 -------SVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDR  339 (422)
T ss_pred             -------cccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCC
Confidence                   12245567788888886 467899999999999999875 4678899999999999999985 5789999999


Q ss_pred             cEEEEEcCC-CCE------------EEEE--ecCCCcceeEECCCCCe-EEEEEcCCCCCCCCcceEEEEee
Q 022716          235 FIDISNVHT-GRT------------VHQI--PCRAAMNSVEWNPKYNL-LAYAGDDKNKYQADEGVFRIYGF  290 (293)
Q Consensus       235 ~i~iw~~~~-~~~------------~~~~--~~~~~i~~~~~sp~~~~-la~~~~d~~~~~~~~~~~~~~~~  290 (293)
                      .+.+||+.. +..            +..+  .++..|+.++|+|.... |++.+.|        ..++||++
T Consensus       340 rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeD--------N~LqIW~~  403 (422)
T KOG0264|consen  340 RLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAED--------NILQIWQM  403 (422)
T ss_pred             cEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCC--------ceEEEeec
Confidence            999999864 211            1112  34567999999998865 7777777        45666665

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.95  E-value=5.4e-25  Score=205.56  Aligned_cols=218  Identities=17%  Similarity=0.295  Sum_probs=168.9

Q ss_pred             ccccEEEEEECCC-CCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCC
Q 022716           19 HKKKVHSVAWNCT-GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDAR   97 (293)
Q Consensus        19 h~~~v~~l~~s~~-~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~   97 (293)
                      +...|.+++|++. +.+|++++.||+|++||+...    .....+.+|.+.|++++|+|.++.+|+||+.|+.|++||++
T Consensus       531 ~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~----~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~  606 (793)
T PLN00181        531 SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARS----QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSIN  606 (793)
T ss_pred             ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCC----eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECC
Confidence            4568999999874 789999999999999998742    12345678999999999998667799999999999999999


Q ss_pred             CCeeeeeeeecCceEEEEEc-CCCCEEEEEeCCCeEEEEEccccc-eeee-ecccceeeeeEEecCCCEEE---------
Q 022716           98 SGKCSQQAELSGENINITYK-PDGTHIAVGNRDDELTILDVRKFK-PIHR-RKFGYEVNEIAWNMTGEMFF---------  165 (293)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~d~~i~l~d~~~~~-~~~~-~~~~~~~~~v~~~~~~~~~~---------  165 (293)
                      ++.+...+..+..+.++.|. +++..+++|+.|+.|++||+++.. +... ..+...+..+.|.. +..+.         
T Consensus       607 ~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~-~~~lvs~s~D~~ik  685 (793)
T PLN00181        607 QGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVD-SSTLVSSSTDNTLK  685 (793)
T ss_pred             CCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeC-CCEEEEEECCCEEE
Confidence            98887777766677888884 579999999999999999998654 2222 22334555565542 22211         


Q ss_pred             ------------------EecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEe-------------eccCCC
Q 022716          166 ------------------LTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF-------------TKLEWP  214 (293)
Q Consensus       166 ------------------~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~-------------~~~~~~  214 (293)
                                        +..+...+.+++++|++.+|++|+.|+.|.+|+......+..+             ..+...
T Consensus       686 iWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~  765 (793)
T PLN00181        686 LWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQF  765 (793)
T ss_pred             EEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcE
Confidence                              2223344567899999999999999999999997654322211             223456


Q ss_pred             eeEEEEccCCCEEEEecCCCcEEEEEc
Q 022716          215 VRTISFSHTGDYIASASEDLFIDISNV  241 (293)
Q Consensus       215 v~~l~~sp~~~~l~s~s~d~~i~iw~~  241 (293)
                      |.+++|+|++.+|++|+.||.|+||++
T Consensus       766 V~~v~ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        766 ISSVCWRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             EEEEEEcCCCCeEEEecCCCcEEEEec
Confidence            999999999999999999999999985

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=5.3e-26  Score=185.69  Aligned_cols=228  Identities=18%  Similarity=0.308  Sum_probs=179.5

Q ss_pred             cCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeC
Q 022716           17 TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDA   96 (293)
Q Consensus        17 ~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~   96 (293)
                      .+|.+.|.+++.|+||++||||+.|..|.||+.++..    ....+.+|.+.|.+++|-. +.+.+++++.|..+++|++
T Consensus       199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~e----hv~~~~ghr~~V~~L~fr~-gt~~lys~s~Drsvkvw~~  273 (479)
T KOG0299|consen  199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLE----HVKVFKGHRGAVSSLAFRK-GTSELYSASADRSVKVWSI  273 (479)
T ss_pred             ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccc----hhhcccccccceeeeeeec-CccceeeeecCCceEEEeh
Confidence            4899999999999999999999999999999987532    1224789999999999953 5667899999999999999


Q ss_pred             CCCeeeee-eeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEE
Q 022716           97 RSGKCSQQ-AELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYC  175 (293)
Q Consensus        97 ~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  175 (293)
                      +.-..+.+ +.++..+..+....-++-+-+|+.|.++++|++....                     .+.+..+.+.+-|
T Consensus       274 ~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ees---------------------qlifrg~~~sidc  332 (479)
T KOG0299|consen  274 DQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEES---------------------QLIFRGGEGSIDC  332 (479)
T ss_pred             hHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccc---------------------eeeeeCCCCCeee
Confidence            76554443 3355666777766667777788899999999984321                     1233344556677


Q ss_pred             EEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeec-c-----------CCCeeEEEEccCCCEEEEecCCCcEEEEEcCC
Q 022716          176 IAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK-L-----------EWPVRTISFSHTGDYIASASEDLFIDISNVHT  243 (293)
Q Consensus       176 ~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~-~-----------~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~  243 (293)
                      ++|- +..++++|+++|.|.+|++.+..++.+... |           ..+|++|+..|...++|+||.+|.|++|.+.+
T Consensus       333 v~~I-n~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~  411 (479)
T KOG0299|consen  333 VAFI-NDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIED  411 (479)
T ss_pred             EEEe-cccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecC
Confidence            7774 567899999999999999988776654321 1           23799999999999999999999999999998


Q ss_pred             C----CEEEEEecCCCcceeEECCCCCeEEEE
Q 022716          244 G----RTVHQIPCRAAMNSVEWNPKYNLLAYA  271 (293)
Q Consensus       244 ~----~~~~~~~~~~~i~~~~~sp~~~~la~~  271 (293)
                      +    ..+..++..+-|++|.|+++|..+++|
T Consensus       412 g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivag  443 (479)
T KOG0299|consen  412 GLRAINLLYSLSLVGFVNSLAFSNSGKRIVAG  443 (479)
T ss_pred             CccccceeeecccccEEEEEEEccCCCEEEEe
Confidence            7    334556667789999999999865555

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.95  E-value=3.3e-26  Score=174.66  Aligned_cols=229  Identities=20%  Similarity=0.273  Sum_probs=188.8

Q ss_pred             EeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeeee---cCceEEEEEcC-CCCEEEEEeCCCeEEEEE
Q 022716           61 ELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAEL---SGENINITYKP-DGTHIAVGNRDDELTILD  136 (293)
Q Consensus        61 ~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~---~~~~~~~~~~~-~~~~l~~~~~d~~i~l~d  136 (293)
                      .+.+|...|.+++|+.++ ..|++|+.|+++++|++...+.......   .+.+..++|+| ....+++.+.|.++++||
T Consensus        15 ~~~~~~~~v~Sv~wn~~g-~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd   93 (313)
T KOG1407|consen   15 ELQGHVQKVHSVAWNCDG-TKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD   93 (313)
T ss_pred             HhhhhhhcceEEEEcccC-ceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence            466899999999999875 5789999999999999987755444332   23455677775 456899999999999999


Q ss_pred             ccccceeeeecccceeeeeEEecCCCEEEEecCCCCEE--------------------EEEECCCCCEEEEecCCCcEEE
Q 022716          137 VRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCY--------------------CIAIDPMGRYFAVGSADSLVSL  196 (293)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~l~~gs~d~~i~i  196 (293)
                      +|..++..+.....+-..+.|+|.++.+.+...+..++                    -++++-++..+...+..|+|.|
T Consensus        94 ~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~I  173 (313)
T KOG1407|consen   94 IRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEI  173 (313)
T ss_pred             eccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEE
Confidence            99999998887777777789999999888777665433                    4566666777777777899999


Q ss_pred             EeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEe-cCCCcceeEECCCCCeEEEEEcCC
Q 022716          197 WDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDK  275 (293)
Q Consensus       197 wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~-~~~~i~~~~~sp~~~~la~~~~d~  275 (293)
                      -.....+++.+++.|.....+|.|+|+|+|+|+|+.|..+.+||+..--.++.+. +.=||+.|+||-+|++||+||.|-
T Consensus       174 LsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh  253 (313)
T KOG1407|consen  174 LSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDH  253 (313)
T ss_pred             EeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccc
Confidence            9999999999999999888999999999999999999999999998766666554 345899999999999999999999


Q ss_pred             CCCCCCcceE-EEEee
Q 022716          276 NKYQADEGVF-RIYGF  290 (293)
Q Consensus       276 ~~~~~~~~~~-~~~~~  290 (293)
                      .+=|++-.+. |||.+
T Consensus       254 ~IDIA~vetGd~~~eI  269 (313)
T KOG1407|consen  254 FIDIAEVETGDRVWEI  269 (313)
T ss_pred             eEEeEecccCCeEEEe
Confidence            8888776555 78875

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=1e-25  Score=176.60  Aligned_cols=237  Identities=19%  Similarity=0.281  Sum_probs=170.7

Q ss_pred             eeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCc--eeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716           14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGK--VKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (293)
Q Consensus        14 ~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~--~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i   91 (293)
                      ..++||++.|++++|+.||+.|||++.|+.|++|+++......  .....++  -+.-+.+.|.|+-..+++++-....+
T Consensus        80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve--~dhpT~V~FapDc~s~vv~~~~g~~l  157 (420)
T KOG2096|consen   80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVE--YDHPTRVVFAPDCKSVVVSVKRGNKL  157 (420)
T ss_pred             hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcccc--CCCceEEEECCCcceEEEEEccCCEE
Confidence            4578999999999999999999999999999999987532111  1111111  12356788999887888888888899


Q ss_pred             EEEeCCCC---eeeee--------e--eecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEe
Q 022716           92 RLWDARSG---KCSQQ--------A--ELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWN  158 (293)
Q Consensus        92 ~vwd~~~~---~~~~~--------~--~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~  158 (293)
                      ++|.+...   .....        +  .+...++.+-....++++++++.|..|.+|+++. +.+....           
T Consensus       158 ~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkG-q~L~~id-----------  225 (420)
T KOG2096|consen  158 CVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKG-QLLQSID-----------  225 (420)
T ss_pred             EEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCC-ceeeeec-----------
Confidence            99976322   11110        1  1122345566677889999999999999999984 3333211           


Q ss_pred             cCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeC---CCC-----EEEEEeeccCCCeeEEEEccCCCEEEEe
Q 022716          159 MTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDI---SEM-----LCVRTFTKLEWPVRTISFSHTGDYIASA  230 (293)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~---~~~-----~~~~~~~~~~~~v~~l~~sp~~~~l~s~  230 (293)
                               .....-+..+++|+|+++++++----|++|.+   +.+     .++.++++|...|.+.+|||+.+.++|.
T Consensus       226 ---------tnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtv  296 (420)
T KOG2096|consen  226 ---------TNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTV  296 (420)
T ss_pred             ---------cccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEE
Confidence                     11222345788999999999988888999985   233     2345788999999999999999999999


Q ss_pred             cCCCcEEEEEcCCCCE-------EEEE--e---cCCCcceeEECCCCCeEEEEEc
Q 022716          231 SEDLFIDISNVHTGRT-------VHQI--P---CRAAMNSVEWNPKYNLLAYAGD  273 (293)
Q Consensus       231 s~d~~i~iw~~~~~~~-------~~~~--~---~~~~i~~~~~sp~~~~la~~~~  273 (293)
                      |.||.++|||..-...       ++..  +   ..+.-..++.+|+|..||.+..
T Consensus       297 SkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~g  351 (420)
T KOG2096|consen  297 SKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFG  351 (420)
T ss_pred             ecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecC
Confidence            9999999999864321       2211  1   1122237999999999998864

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.95  E-value=1.6e-25  Score=196.18  Aligned_cols=230  Identities=21%  Similarity=0.341  Sum_probs=186.5

Q ss_pred             ccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCC
Q 022716           19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS   98 (293)
Q Consensus        19 h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~   98 (293)
                      |...+.+..|.  +..+++++.|+++++|+...   .......+.||.+.|.++.+.. +..++++|+.|.++++||..+
T Consensus       207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~---~~~i~~~l~GH~g~V~~l~~~~-~~~~lvsgS~D~t~rvWd~~s  280 (537)
T KOG0274|consen  207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNN---GYLILTRLVGHFGGVWGLAFPS-GGDKLVSGSTDKTERVWDCST  280 (537)
T ss_pred             Ccchhhhheee--cCeEEecCCCceeEEeeccc---ceEEEeeccCCCCCceeEEEec-CCCEEEEEecCCcEEeEecCC
Confidence            56789999988  56899999999999999864   2333445889999999999854 568999999999999999999


Q ss_pred             CeeeeeeeecCceE-EEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEE
Q 022716           99 GKCSQQAELSGENI-NITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIA  177 (293)
Q Consensus        99 ~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  177 (293)
                      +.|...+..+.... ++..  .+..+++|+.|.+|++|++.+...++...                    .+.+++.++.
T Consensus       281 g~C~~~l~gh~stv~~~~~--~~~~~~sgs~D~tVkVW~v~n~~~l~l~~--------------------~h~~~V~~v~  338 (537)
T KOG0274|consen  281 GECTHSLQGHTSSVRCLTI--DPFLLVSGSRDNTVKVWDVTNGACLNLLR--------------------GHTGPVNCVQ  338 (537)
T ss_pred             CcEEEEecCCCceEEEEEc--cCceEeeccCCceEEEEeccCcceEEEec--------------------cccccEEEEE
Confidence            99999887554433 3433  34577888999999999998766655432                    2455666777


Q ss_pred             ECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCC-CEEEEEecCCCc
Q 022716          178 IDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTG-RTVHQIPCRAAM  256 (293)
Q Consensus       178 ~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~-~~~~~~~~~~~i  256 (293)
                      ++  +.++++|+.|++|++||+..+++++++++|..+|.++.+.+. ..+++|+.|+.|++||+.+. +.+..+..+..+
T Consensus       339 ~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~  415 (537)
T KOG0274|consen  339 LD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSL  415 (537)
T ss_pred             ec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccc
Confidence            65  889999999999999999999999999999999999987665 89999999999999999998 788887766554


Q ss_pred             ceeEECCCCCeEEEEEcCCCCCCC
Q 022716          257 NSVEWNPKYNLLAYAGDDKNKYQA  280 (293)
Q Consensus       257 ~~~~~sp~~~~la~~~~d~~~~~~  280 (293)
                      . -.....+++|.+++.|+.+++|
T Consensus       416 v-~~l~~~~~~Lvs~~aD~~Ik~W  438 (537)
T KOG0274|consen  416 V-SSLLLRDNFLVSSSADGTIKLW  438 (537)
T ss_pred             c-cccccccceeEeccccccEEEe
Confidence            3 2334478899999999755444

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=2.3e-25  Score=183.15  Aligned_cols=205  Identities=22%  Similarity=0.326  Sum_probs=172.6

Q ss_pred             ceeecCccccEEEEEECCCCCe-EEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716           13 SREYTGHKKKVHSVAWNCTGTK-LASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (293)
Q Consensus        13 ~~~~~~h~~~v~~l~~s~~~~~-l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i   91 (293)
                      .+.+.+|.++|+...|+|+++. |++|+.|+.+++||+...    .....+.+|++.|.+.+++|.....++|||.||+|
T Consensus       103 LR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a----~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~v  178 (487)
T KOG0310|consen  103 LRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTA----YVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKV  178 (487)
T ss_pred             HHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCc----EEEEEecCCcceeEeeccccCCCeEEEecCCCceE
Confidence            4668899999999999998765 678999999999999742    23567899999999999999888899999999999


Q ss_pred             EEEeCCCC-eeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCC
Q 022716           92 RLWDARSG-KCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGN  170 (293)
Q Consensus        92 ~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  170 (293)
                      ++||++.. ..+..+.+..++-.+.+-|.|..+++++ .+.+++||+-++..+-.                   ....|.
T Consensus       179 rl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll~-------------------~~~~H~  238 (487)
T KOG0310|consen  179 RLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQLLT-------------------SMFNHN  238 (487)
T ss_pred             EEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCceehh-------------------hhhccc
Confidence            99999887 5556667777788899999999888886 57899999875432211                   122366


Q ss_pred             CCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcC
Q 022716          171 AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVH  242 (293)
Q Consensus       171 ~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~  242 (293)
                      ..++|+.+..++..|++|+-|+.+++||+.+.+.++.+ ....||.+++.+|+++.++.|-.||.+.+-...
T Consensus       239 KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~-~~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~  309 (487)
T KOG0310|consen  239 KTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSW-KYPGPVLSIAVSPDDQTVVIGMSNGLVSIRRRE  309 (487)
T ss_pred             ceEEEEEeecCCceEeecccccceEEEEccceEEEEee-ecccceeeEEecCCCceEEEecccceeeeehhh
Confidence            77899999999999999999999999999998888877 567899999999999999999999998776443

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.95  E-value=9.4e-24  Score=175.84  Aligned_cols=245  Identities=13%  Similarity=0.124  Sum_probs=176.7

Q ss_pred             CCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeeeecCce
Q 022716           32 GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGEN  111 (293)
Q Consensus        32 ~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~  111 (293)
                      ++.++|++.|+.+++||+....  .  ...+..+. .+..+.|+|++..++++++.++.|++||..+++....+.....+
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~~--~--~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~   75 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATLE--V--TRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDP   75 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCCc--e--EEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCc
Confidence            3568899999999999986432  1  12334443 35678999976545577788999999999988776655544456


Q ss_pred             EEEEEcCCCCEEEEE-eCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCC-------------------
Q 022716          112 INITYKPDGTHIAVG-NRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNA-------------------  171 (293)
Q Consensus       112 ~~~~~~~~~~~l~~~-~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-------------------  171 (293)
                      ..++++|+++.++++ +.++.+.+||+++...+.....+..+..+.|++++..+.......                   
T Consensus        76 ~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~  155 (300)
T TIGR03866        76 ELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV  155 (300)
T ss_pred             cEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc
Confidence            678899999977665 458999999998877666555455567788888877655443221                   


Q ss_pred             --CEEEEEECCCCCEEEEe-cCCCcEEEEeCCCCEEEEEeeccC-------CCeeEEEEccCCCEEEE-ecCCCcEEEEE
Q 022716          172 --GCYCIAIDPMGRYFAVG-SADSLVSLWDISEMLCVRTFTKLE-------WPVRTISFSHTGDYIAS-ASEDLFIDISN  240 (293)
Q Consensus       172 --~~~~~~~~~~~~~l~~g-s~d~~i~iwd~~~~~~~~~~~~~~-------~~v~~l~~sp~~~~l~s-~s~d~~i~iw~  240 (293)
                        ....++++|++++++++ ..++.|.+||+++++.+..+..+.       .....++|+|++++++. .+.++.+.+||
T Consensus       156 ~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d  235 (300)
T TIGR03866       156 DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVD  235 (300)
T ss_pred             CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEE
Confidence              22357889999987544 569999999999887766553221       12356889999998644 45667899999


Q ss_pred             cCCCCEEEEEecCCCcceeEECCCCCeEEEEE-cCCCCCCCC
Q 022716          241 VHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAG-DDKNKYQAD  281 (293)
Q Consensus       241 ~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~-~d~~~~~~~  281 (293)
                      ..+++.+........+.+++|+|++++|++++ .++.+.+|+
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d  277 (300)
T TIGR03866       236 AKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVID  277 (300)
T ss_pred             CCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEE
Confidence            99988776665566799999999999988875 354444333

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=3.7e-25  Score=180.88  Aligned_cols=260  Identities=18%  Similarity=0.310  Sum_probs=209.8

Q ss_pred             ccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCe
Q 022716           21 KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGK  100 (293)
Q Consensus        21 ~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~  100 (293)
                      +.|+++.|+|.-..|++|+.||+++||.++....+.+..+.+.  .-+|.+..|.|.+...+++++.-.....||+.+++
T Consensus       214 ~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~--~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak  291 (514)
T KOG2055|consen  214 GGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLE--KFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK  291 (514)
T ss_pred             CCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeec--cCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence            6899999999999999999999999999987655555555554  46799999999887689999999999999998876


Q ss_pred             eeeeeeecC----ceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCC----
Q 022716          101 CSQQAELSG----ENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAG----  172 (293)
Q Consensus       101 ~~~~~~~~~----~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~----  172 (293)
                      ....-...+    .......+|++++++..+..|-|.+.-..+.+.+...+....+..+.|+.+++.+++.++.+.    
T Consensus       292 ~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~  371 (514)
T KOG2055|consen  292 VTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVW  371 (514)
T ss_pred             cccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEE
Confidence            543322222    223467789999999999999999999999998888888889999999988877776654432    


Q ss_pred             ------------------EEEEEECCCCCEEEEecCCCcEEEEeCCC------CEEEEEeeccCCCeeEEEEccCCCEEE
Q 022716          173 ------------------CYCIAIDPMGRYFAVGSADSLVSLWDISE------MLCVRTFTKLEWPVRTISFSHTGDYIA  228 (293)
Q Consensus       173 ------------------~~~~~~~~~~~~l~~gs~d~~i~iwd~~~------~~~~~~~~~~~~~v~~l~~sp~~~~l~  228 (293)
                                        -++++.++++.+||+||..|.|+|||.++      .+++..+......|+++.|+|+++.||
T Consensus       372 nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLA  451 (514)
T KOG2055|consen  372 NLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILA  451 (514)
T ss_pred             ecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhh
Confidence                              24678889999999999999999999654      344555666677899999999999998


Q ss_pred             EecC--CCcEEEEEcCCCCEEEEEecC----CCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEee
Q 022716          229 SASE--DLFIDISNVHTGRTVHQIPCR----AAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGF  290 (293)
Q Consensus       229 s~s~--d~~i~iw~~~~~~~~~~~~~~----~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~  290 (293)
                      .+|.  +..+++--+.+......++..    +.+++++|||.+.+||.|..+        |.+++|-+
T Consensus       452 iaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~--------grv~l~kL  511 (514)
T KOG2055|consen  452 IASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEA--------GRVHLFKL  511 (514)
T ss_pred             hhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCC--------CceeeEee
Confidence            8884  567888888777766666543    357899999999999999876        45666654

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.94  E-value=3.8e-26  Score=184.26  Aligned_cols=219  Identities=20%  Similarity=0.377  Sum_probs=179.2

Q ss_pred             eeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEE
Q 022716           14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL   93 (293)
Q Consensus        14 ~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~v   93 (293)
                      ..+.|-.+.|+++.|.++++.+++++.|+.+++|+++...    ..-.+.+|++.|+++.|.... ..+++|+.|.+|+.
T Consensus       213 ~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r----~~~TLsGHtdkVt~ak~~~~~-~~vVsgs~DRtiK~  287 (459)
T KOG0288|consen  213 STLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLR----LRHTLSGHTDKVTAAKFKLSH-SRVVSGSADRTIKL  287 (459)
T ss_pred             hhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchh----hhhhhcccccceeeehhhccc-cceeeccccchhhh
Confidence            4456777899999999999999999999999999997532    123578999999999987543 34899999999999


Q ss_pred             EeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCC---
Q 022716           94 WDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGN---  170 (293)
Q Consensus        94 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---  170 (293)
                      ||+....|.........+..+..+  ...+++|..|++|+.||++...+......+..+.++..++.+..+...+.+   
T Consensus       288 WDl~k~~C~kt~l~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl  365 (459)
T KOG0288|consen  288 WDLQKAYCSKTVLPGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTL  365 (459)
T ss_pred             hhhhhhheeccccccccccceEec--ceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCce
Confidence            999998887765555554445544  456888889999999999999998888888888888877776554433322   


Q ss_pred             ----------------------CCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCC--CeeEEEEccCCCE
Q 022716          171 ----------------------AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEW--PVRTISFSHTGDY  226 (293)
Q Consensus       171 ----------------------~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~--~v~~l~~sp~~~~  226 (293)
                                            ...+.+.|+|++.|+++|+.||.|+||++.++++...+.....  .|++++|+|.|.+
T Consensus       366 ~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~  445 (459)
T KOG0288|consen  366 KVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSG  445 (459)
T ss_pred             eeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCch
Confidence                                  1245678999999999999999999999999988777765443  5999999999999


Q ss_pred             EEEecCCCcEEEE
Q 022716          227 IASASEDLFIDIS  239 (293)
Q Consensus       227 l~s~s~d~~i~iw  239 (293)
                      |++++.++.+.+|
T Consensus       446 Llsadk~~~v~lW  458 (459)
T KOG0288|consen  446 LLSADKQKAVTLW  458 (459)
T ss_pred             hhcccCCcceEec
Confidence            9999999999999

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=5.3e-26  Score=172.94  Aligned_cols=209  Identities=24%  Similarity=0.354  Sum_probs=164.2

Q ss_pred             ccccceeecCccccEEEEEECCCC-CeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeC
Q 022716            9 KNLHSREYTGHKKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASG   87 (293)
Q Consensus         9 ~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~   87 (293)
                      +..+++.++.|+.+|.++.|++.. ..++++|.|++||+|+.....    ....+.+|+..|+...|+|..++++++++.
T Consensus        93 ~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~----Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sg  168 (311)
T KOG0277|consen   93 PSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN----SVQTFNGHNSCIYQAAFSPHIPNLFASASG  168 (311)
T ss_pred             CCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc----ceEeecCCccEEEEEecCCCCCCeEEEccC
Confidence            334667789999999999999865 457888999999999976421    223588999999999999999999999999


Q ss_pred             CCeEEEEeCCCCeeeeeeeecC-ceEEEEEcC-CCCEEEEEeCCCeEEEEEccccc-eeeeecccceeeeeEEecCCCEE
Q 022716           88 DKTVRLWDARSGKCSQQAELSG-ENINITYKP-DGTHIAVGNRDDELTILDVRKFK-PIHRRKFGYEVNEIAWNMTGEMF  164 (293)
Q Consensus        88 d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~-~~~~l~~~~~d~~i~l~d~~~~~-~~~~~~~~~~~~~v~~~~~~~~~  164 (293)
                      |+.+++||++.......++.+. ++.+|.|++ +...|++|+.|+.|+.||+|+.+ |+.                    
T Consensus       169 d~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~--------------------  228 (311)
T KOG0277|consen  169 DGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLF--------------------  228 (311)
T ss_pred             CceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccce--------------------
Confidence            9999999997654333355444 778999975 56688999999999999998754 222                    


Q ss_pred             EEecCCCCEEEEEECCCC-CEEEEecCCCcEEEEeCCCC-EEEEEeeccCCCeeEEEEcc-CCCEEEEecCCCcEEEEEc
Q 022716          165 FLTTGNAGCYCIAIDPMG-RYFAVGSADSLVSLWDISEM-LCVRTFTKLEWPVRTISFSH-TGDYIASASEDLFIDISNV  241 (293)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~-~~l~~gs~d~~i~iwd~~~~-~~~~~~~~~~~~v~~l~~sp-~~~~l~s~s~d~~i~iw~~  241 (293)
                      .+..+.-.+-.+.++|-. ..||+++-|-+++|||.... ..+.+...|...+..+.||+ +..++|+++-|+.++||+.
T Consensus       229 eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  229 ELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             eecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence            222334445566677754 67899999999999998744 34455666788899999997 4679999999999999984

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.94  E-value=1.9e-24  Score=186.10  Aligned_cols=262  Identities=20%  Similarity=0.357  Sum_probs=213.1

Q ss_pred             cccEEEEEECCCCC---eEEEEeCCCcEEEeecCCCCCC-----ceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716           20 KKKVHSVAWNCTGT---KLASGSVDQTARVWHIEPHGHG-----KVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (293)
Q Consensus        20 ~~~v~~l~~s~~~~---~l~s~~~dg~v~iw~~~~~~~~-----~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i   91 (293)
                      ...|.++.|-|.++   .|++ -.++++..|.++.....     ....+.+.||...|.+++++.+ ..+++| +..+.+
T Consensus       320 ~~kiks~dv~~~~~~~~~lv~-l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d-~~~~~S-ga~~Si  396 (888)
T KOG0306|consen  320 SAKIKSFDVTPSGGTENTLVL-LANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSD-SILLAS-GAGESI  396 (888)
T ss_pred             hhheeEEEEEecCCcceeEEE-eecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecC-ceeeee-cCCCcE
Confidence            35788888888764   3444 67899999988752211     2234568899999999999864 344544 446789


Q ss_pred             EEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeec-ccceeeeeEEecCCCEEEEecC-
Q 022716           92 RLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTG-  169 (293)
Q Consensus        92 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~-  169 (293)
                      ++|+..+.+|++++... ...+..|-|.++++++|+..|.+.++|+.+...+.++. +...++.++..|++..+...+. 
T Consensus       397 kiWn~~t~kciRTi~~~-y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saD  475 (888)
T KOG0306|consen  397 KIWNRDTLKCIRTITCG-YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSAD  475 (888)
T ss_pred             EEEEccCcceeEEeccc-cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCC
Confidence            99999999999887655 67788899999999999999999999998877665554 5566777777776654443322 


Q ss_pred             --------------------------------CCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeE
Q 022716          170 --------------------------------NAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRT  217 (293)
Q Consensus       170 --------------------------------~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~  217 (293)
                                                      ...+.|+.++||+++||++--|+++++|-+.+..-.-++.+|.-||.+
T Consensus       476 ktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~s  555 (888)
T KOG0306|consen  476 KTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLS  555 (888)
T ss_pred             cEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeE
Confidence                                            135779999999999999999999999999988777788999999999


Q ss_pred             EEEccCCCEEEEecCCCcEEEEEcCCCCEEEE-EecCCCcceeEECCCCCeEEEEEcCCCCCCCCcceE
Q 022716          218 ISFSHTGDYIASASEDLFIDISNVHTGRTVHQ-IPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVF  285 (293)
Q Consensus       218 l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~-~~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~  285 (293)
                      +.+|||++.++|||.|..|++|.+.-|.+-+. +.|..+|.++.|-|+...|.++|.|+.+.+||..+|
T Consensus       556 mDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kF  624 (888)
T KOG0306|consen  556 MDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKF  624 (888)
T ss_pred             EeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhh
Confidence            99999999999999999999999998887665 456788999999999999999999999999988766

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.94  E-value=1.2e-25  Score=185.75  Aligned_cols=239  Identities=19%  Similarity=0.289  Sum_probs=197.4

Q ss_pred             cccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCC
Q 022716           20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG   99 (293)
Q Consensus        20 ~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~   99 (293)
                      .+-|.++.+.|||+.|++|+.-.++-|||+.... ..+ ..++......+++++.+|+ .++.+++..||.|.|||+.+.
T Consensus       465 dnyiRSckL~pdgrtLivGGeastlsiWDLAapT-pri-kaeltssapaCyALa~spD-akvcFsccsdGnI~vwDLhnq  541 (705)
T KOG0639|consen  465 DNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPT-PRI-KAELTSSAPACYALAISPD-AKVCFSCCSDGNIAVWDLHNQ  541 (705)
T ss_pred             ccceeeeEecCCCceEEeccccceeeeeeccCCC-cch-hhhcCCcchhhhhhhcCCc-cceeeeeccCCcEEEEEcccc
Confidence            4568899999999999999999999999997532 111 1234333456788999997 578889999999999999998


Q ss_pred             eeeeeeee-cCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEE
Q 022716          100 KCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAI  178 (293)
Q Consensus       100 ~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  178 (293)
                      ..++.++. .....++.+++||..|.+|+-|++++.||+|....+....|..                     .|.++..
T Consensus       542 ~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~S---------------------QIfSLg~  600 (705)
T KOG0639|consen  542 TLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSS---------------------QIFSLGY  600 (705)
T ss_pred             eeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhh---------------------hheeccc
Confidence            88777764 4556789999999999999999999999999876555433322                     3456777


Q ss_pred             CCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEecCCCcce
Q 022716          179 DPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNS  258 (293)
Q Consensus       179 ~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~i~~  258 (293)
                      .|++.+|++|-+++.+.+-.....+ .+.+.-|+.-|.++.|++.|+++++-+.|+.+..|...-|..+.+.+..++|.+
T Consensus       601 cP~~dWlavGMens~vevlh~skp~-kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~SsVls  679 (705)
T KOG0639|consen  601 CPTGDWLAVGMENSNVEVLHTSKPE-KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLS  679 (705)
T ss_pred             CCCccceeeecccCcEEEEecCCcc-ceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeeccccCccee
Confidence            8999999999999999999876554 346677899999999999999999999999999999988998988888889999


Q ss_pred             eEECCCCCeEEEEEcCCCCCCCCcceEEEEeee
Q 022716          259 VEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE  291 (293)
Q Consensus       259 ~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~  291 (293)
                      +..|-+..+|++|+.|+        ...||.++
T Consensus       680 CDIS~ddkyIVTGSGdk--------kATVYeV~  704 (705)
T KOG0639|consen  680 CDISFDDKYIVTGSGDK--------KATVYEVI  704 (705)
T ss_pred             eeeccCceEEEecCCCc--------ceEEEEEe
Confidence            99999999999999886        34566654

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.94  E-value=1.2e-24  Score=169.65  Aligned_cols=207  Identities=21%  Similarity=0.397  Sum_probs=168.6

Q ss_pred             cCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeC
Q 022716           17 TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDA   96 (293)
Q Consensus        17 ~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~   96 (293)
                      ..|.+++.+++|-+ ...+++|+.||.|+.+|+....     ...+..|..+|.++.+.+. ...+++||+|++|++||.
T Consensus        51 ~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~-----~~~igth~~~i~ci~~~~~-~~~vIsgsWD~~ik~wD~  123 (323)
T KOG1036|consen   51 FKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGN-----EDQIGTHDEGIRCIEYSYE-VGCVISGSWDKTIKFWDP  123 (323)
T ss_pred             eecCCceeeeeccC-CceEEEeccCceEEEEEecCCc-----ceeeccCCCceEEEEeecc-CCeEEEcccCccEEEEec
Confidence            36889999999986 5579999999999999997532     2346689999999999875 467899999999999999


Q ss_pred             CCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEcccccee---eeecccceeeeeEEecCCCEEEEecCCC--
Q 022716           97 RSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPI---HRRKFGYEVNEIAWNMTGEMFFLTTGNA--  171 (293)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~--  171 (293)
                      +.......+.....+.++...  |..|++|+.+..+.+||+|+....   +...+...+++++.-|.++-+++.+-++  
T Consensus       124 R~~~~~~~~d~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRV  201 (323)
T KOG1036|consen  124 RNKVVVGTFDQGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRV  201 (323)
T ss_pred             cccccccccccCceEEEEecc--CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceE
Confidence            876555555555566666554  679999999999999999986543   2445667788888888665555443221  


Q ss_pred             --------------------------------CEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEE
Q 022716          172 --------------------------------GCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTIS  219 (293)
Q Consensus       172 --------------------------------~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~  219 (293)
                                                      ++.+++|+|-...||||+.||.|.+||+.+.+.+..+.+.+..|.+++
T Consensus       202 avE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~sls  281 (323)
T KOG1036|consen  202 AVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLS  281 (323)
T ss_pred             EEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEE
Confidence                                            366899999999999999999999999999988999988888899999


Q ss_pred             EccCCCEEEEecC
Q 022716          220 FSHTGDYIASASE  232 (293)
Q Consensus       220 ~sp~~~~l~s~s~  232 (293)
                      |+.+|..||+|+.
T Consensus       282 fs~dG~~LAia~s  294 (323)
T KOG1036|consen  282 FSMDGSLLAIASS  294 (323)
T ss_pred             eccCCCeEEEEec
Confidence            9999999999875

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.94  E-value=8e-27  Score=199.83  Aligned_cols=237  Identities=22%  Similarity=0.382  Sum_probs=199.7

Q ss_pred             ceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEE
Q 022716           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (293)
Q Consensus        13 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~   92 (293)
                      .+++..|...|.|+..-..++.+++|+.|..+-+|.+....    ....+.+|..+|.++.|++. ..+|++|+.+|+|+
T Consensus        21 ~~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~----~i~S~~~hespIeSl~f~~~-E~LlaagsasgtiK   95 (825)
T KOG0267|consen   21 TREFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPN----AITSLTGHESPIESLTFDTS-ERLLAAGSASGTIK   95 (825)
T ss_pred             chhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCc----hhheeeccCCcceeeecCcc-hhhhcccccCCcee
Confidence            35677899999999988888999999999999999875321    12247899999999999876 57899999999999


Q ss_pred             EEeCCCCeeeeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCC
Q 022716           93 LWDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNA  171 (293)
Q Consensus        93 vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  171 (293)
                      +||+..++.++.+. +...+.++.|+|-+.+.+.|+.|..+++||++...+.+.++                    ++..
T Consensus        96 ~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~--------------------s~~~  155 (825)
T KOG0267|consen   96 VWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYK--------------------SHTR  155 (825)
T ss_pred             eeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeec--------------------CCcc
Confidence            99999887666554 34567789999999999999999999999998766554432                    2333


Q ss_pred             CEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEe
Q 022716          172 GCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP  251 (293)
Q Consensus       172 ~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~  251 (293)
                      .+-++.|+|+|+++++|++|.+++|||...++...+|..|+..+.++.|+|..-++++||.|+++++||+++...+....
T Consensus       156 vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~  235 (825)
T KOG0267|consen  156 VVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGK  235 (825)
T ss_pred             eeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccC
Confidence            45578999999999999999999999999999999999999999999999999999999999999999999888776543


Q ss_pred             -cCCCcceeEECCCCCeEEEEEcC
Q 022716          252 -CRAAMNSVEWNPKYNLLAYAGDD  274 (293)
Q Consensus       252 -~~~~i~~~~~sp~~~~la~~~~d  274 (293)
                       ....|.+++|+|++..+++|-..
T Consensus       236 ~~~~~v~~~~fn~~~~~~~~G~q~  259 (825)
T KOG0267|consen  236 PETDGVRSLAFNPDGKIVLSGEQI  259 (825)
T ss_pred             CccCCceeeeecCCceeeecCchh
Confidence             35679999999999887777544

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=2.9e-25  Score=191.62  Aligned_cols=245  Identities=18%  Similarity=0.321  Sum_probs=181.1

Q ss_pred             cccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCC---cCCeeEEEEcCCCCCEEEEEeCCCeEEEEeC
Q 022716           20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGH---ADSVDQLCWDPKHADLIATASGDKTVRLWDA   96 (293)
Q Consensus        20 ~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h---~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~   96 (293)
                      ++....+..+++-.+++.++. -.+++|.+.+..........+..-   .-.+..|.|+.-..++|+|++..|.|.+||+
T Consensus        39 k~~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdl  117 (839)
T KOG0269|consen   39 KAKANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDL  117 (839)
T ss_pred             ccccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEec
Confidence            356677888899999988874 677888877654333222222211   1235678887666789999999999999999


Q ss_pred             CCC---eeeeee-eecCceEEEEEcCC-CCEEEEEeCCCeEEEEEccccceeeeecc-cceeeeeEEecCCCEEEEecCC
Q 022716           97 RSG---KCSQQA-ELSGENINITYKPD-GTHIAVGNRDDELTILDVRKFKPIHRRKF-GYEVNEIAWNMTGEMFFLTTGN  170 (293)
Q Consensus        97 ~~~---~~~~~~-~~~~~~~~~~~~~~-~~~l~~~~~d~~i~l~d~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~  170 (293)
                      ...   +.+..+ ++.-.+.++.|++. ..+|++|+.||+|++||+|.........- ...+++|+|+|.          
T Consensus       118 nk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~----------  187 (839)
T KOG0269|consen  118 NKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPG----------  187 (839)
T ss_pred             CccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccC----------
Confidence            762   222223 23344567888764 46889999999999999998765443321 223444444322          


Q ss_pred             CCEEEEEECCCCCEEEEecCCCcEEEEeCCCC-EEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCC--EE
Q 022716          171 AGCYCIAIDPMGRYFAVGSADSLVSLWDISEM-LCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGR--TV  247 (293)
Q Consensus       171 ~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~-~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~--~~  247 (293)
                                .+.+++++.+.|.+++||+++. ++..++..|.++|.++.|+|++.+|||||.|++|+||+..+++  .+
T Consensus       188 ----------~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~  257 (839)
T KOG0269|consen  188 ----------YGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPK  257 (839)
T ss_pred             ----------CCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccce
Confidence                      3678999999999999999864 4556788999999999999999999999999999999998664  46


Q ss_pred             EEEecCCCcceeEECCCC-CeEEEEEcCCCCCCCCcceEEEEeee
Q 022716          248 HQIPCRAAMNSVEWNPKY-NLLAYAGDDKNKYQADEGVFRIYGFE  291 (293)
Q Consensus       248 ~~~~~~~~i~~~~~sp~~-~~la~~~~d~~~~~~~~~~~~~~~~~  291 (293)
                      +.+....++.+|+|-|.. .+||++++=      ++..++||++-
T Consensus       258 ~tInTiapv~rVkWRP~~~~hLAtcsmv------~dtsV~VWDvr  296 (839)
T KOG0269|consen  258 HTINTIAPVGRVKWRPARSYHLATCSMV------VDTSVHVWDVR  296 (839)
T ss_pred             eEEeecceeeeeeeccCccchhhhhhcc------ccceEEEEeec
Confidence            677888899999999977 568888853      56788999873

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.93  E-value=1.3e-24  Score=177.44  Aligned_cols=209  Identities=24%  Similarity=0.450  Sum_probs=166.5

Q ss_pred             eecCccccEEEEEECCCCC-eEEEEeCCCcEEEeecCCCCCC---ceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCe
Q 022716           15 EYTGHKKKVHSVAWNCTGT-KLASGSVDQTARVWHIEPHGHG---KVKDIELRGHADSVDQLCWDPKHADLIATASGDKT   90 (293)
Q Consensus        15 ~~~~h~~~v~~l~~s~~~~-~l~s~~~dg~v~iw~~~~~~~~---~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~   90 (293)
                      .+.||.+.-.+|+|++... .|++|+.|++|++||+......   ......+.+|.+.|..++|++...++|.+++.|+.
T Consensus       172 ~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~  251 (422)
T KOG0264|consen  172 RLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGK  251 (422)
T ss_pred             EEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCe
Confidence            5779999899999998764 6899999999999999754331   22334578999999999999998899999999999


Q ss_pred             EEEEeCCC--Ceeeeeee-ecCceEEEEEcC-CCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEE
Q 022716           91 VRLWDARS--GKCSQQAE-LSGENINITYKP-DGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFL  166 (293)
Q Consensus        91 i~vwd~~~--~~~~~~~~-~~~~~~~~~~~~-~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  166 (293)
                      +.|||+++  .++..... +.+.+.+++|.| ++..||+|+.|++|.|||+|+.+.                   .+..+
T Consensus       252 L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~-------------------~lh~~  312 (422)
T KOG0264|consen  252 LMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK-------------------PLHTF  312 (422)
T ss_pred             EEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc-------------------Cceec
Confidence            99999995  33333333 456678999998 456788899999999999998542                   12234


Q ss_pred             ecCCCCEEEEEECCCC-CEEEEecCCCcEEEEeCCCC--------------EEEEEeeccCCCeeEEEEccCCCE-EEEe
Q 022716          167 TTGNAGCYCIAIDPMG-RYFAVGSADSLVSLWDISEM--------------LCVRTFTKLEWPVRTISFSHTGDY-IASA  230 (293)
Q Consensus       167 ~~~~~~~~~~~~~~~~-~~l~~gs~d~~i~iwd~~~~--------------~~~~~~~~~~~~v~~l~~sp~~~~-l~s~  230 (293)
                      ..+...+.++.|+|.. ..||+++.|+.+.+||+..-              +.+....+|...|...+|+|+..+ ++|+
T Consensus       313 e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~Sv  392 (422)
T KOG0264|consen  313 EGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASV  392 (422)
T ss_pred             cCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEe
Confidence            4566677788888874 67899999999999998542              234455689999999999999876 6888


Q ss_pred             cCCCcEEEEEcC
Q 022716          231 SEDLFIDISNVH  242 (293)
Q Consensus       231 s~d~~i~iw~~~  242 (293)
                      ++|+.+.||...
T Consensus       393 aeDN~LqIW~~s  404 (422)
T KOG0264|consen  393 AEDNILQIWQMA  404 (422)
T ss_pred             cCCceEEEeecc
Confidence            999999999875

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=1.1e-23  Score=185.07  Aligned_cols=239  Identities=17%  Similarity=0.278  Sum_probs=189.4

Q ss_pred             cCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCC-CCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEe
Q 022716           17 TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPH-GHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWD   95 (293)
Q Consensus        17 ~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~-~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd   95 (293)
                      .+|+...+.++|.|+|.+|.+++.||.|++|+.... ..+..  +.  .+...|.+++-.   ...|++|+.+++|.+|.
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~t--i~--~~g~~v~~ia~~---s~~f~~~s~~~tv~~y~   82 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPET--ID--ISGELVSSIACY---SNHFLTGSEQNTVLRYK   82 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCch--hh--ccCceeEEEeec---ccceEEeeccceEEEee
Confidence            378999999999999999999999999999987543 22221  11  156677777643   34788999999999999


Q ss_pred             CCCCeeeee-eeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEE
Q 022716           96 ARSGKCSQQ-AELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCY  174 (293)
Q Consensus        96 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  174 (293)
                      +.+++.... ..+.-+...++++-+|++++.|+.|-.|++.++.+....                    ..+..+.+++.
T Consensus        83 fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~--------------------~~lrgh~apVl  142 (933)
T KOG1274|consen   83 FPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQE--------------------KVLRGHDAPVL  142 (933)
T ss_pred             CCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchh--------------------eeecccCCcee
Confidence            988765422 234556678899999999999999999999987653322                    23446778899


Q ss_pred             EEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeecc--------CCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCE
Q 022716          175 CIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL--------EWPVRTISFSHTGDYIASASEDLFIDISNVHTGRT  246 (293)
Q Consensus       175 ~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~--------~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~  246 (293)
                      ++.++|.+.+||+.+-||.|++||+.++.+.+++.+.        ...+..++|+|+|..++..+.|+.|++++......
T Consensus       143 ~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~  222 (933)
T KOG1274|consen  143 QLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWEL  222 (933)
T ss_pred             eeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCcee
Confidence            9999999999999999999999999998777666542        23466789999999999999999999999998877


Q ss_pred             EEEEe---cCCCcceeEECCCCCeEEEEEcCCCCCCCCc
Q 022716          247 VHQIP---CRAAMNSVEWNPKYNLLAYAGDDKNKYQADE  282 (293)
Q Consensus       247 ~~~~~---~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~  282 (293)
                      ...+.   ....+..+.|+|.|.|||+++.|+.+-+|+-
T Consensus       223 ~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv  261 (933)
T KOG1274|consen  223 QFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNV  261 (933)
T ss_pred             heeecccccccceEEEEEcCCCcEEeeeccCCcEEEEec
Confidence            66553   2334889999999999999999975555443

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.93  E-value=4.9e-24  Score=182.08  Aligned_cols=267  Identities=23%  Similarity=0.377  Sum_probs=198.8

Q ss_pred             cceeecCccccEEEEEECCCCC---eEEEEeCCCcEEEeecCCCCCCc----------------ee---EE--------E
Q 022716           12 HSREYTGHKKKVHSVAWNCTGT---KLASGSVDQTARVWHIEPHGHGK----------------VK---DI--------E   61 (293)
Q Consensus        12 ~~~~~~~h~~~v~~l~~s~~~~---~l~s~~~dg~v~iw~~~~~~~~~----------------~~---~~--------~   61 (293)
                      ...++.||.+.|++++|...+.   +|||+|+|..||||.+.......                ..   .+        -
T Consensus       183 ~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eal  262 (764)
T KOG1063|consen  183 RVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEAL  262 (764)
T ss_pred             EEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhh
Confidence            3466889999999999987654   78999999999999875332000                00   00        1


Q ss_pred             eeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCC--eeeeeee---ec---CceEEEEEcCCCCEEEEEeCCCeEE
Q 022716           62 LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG--KCSQQAE---LS---GENINITYKPDGTHIAVGNRDDELT  133 (293)
Q Consensus        62 ~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~--~~~~~~~---~~---~~~~~~~~~~~~~~l~~~~~d~~i~  133 (293)
                      +.||.+-|+++.|+|.+ ..|+|++.|.++.+|.....  -.+....   ..   +....+.|+|++..+++-+..|..+
T Consensus       263 l~GHeDWV~sv~W~p~~-~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~h  341 (764)
T KOG1063|consen  263 LMGHEDWVYSVWWHPEG-LDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFH  341 (764)
T ss_pred             hcCcccceEEEEEccch-hhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEE
Confidence            45999999999999975 45779999999999986544  2222222   11   2356788999999999999999999


Q ss_pred             EEEccccce-eeee---cccceeeeeEEecCCCEEEEecCC---------------------------------------
Q 022716          134 ILDVRKFKP-IHRR---KFGYEVNEIAWNMTGEMFFLTTGN---------------------------------------  170 (293)
Q Consensus       134 l~d~~~~~~-~~~~---~~~~~~~~v~~~~~~~~~~~~~~~---------------------------------------  170 (293)
                      +|-.++... ..+.   .+-..++++.|+|.|+.++..+.+                                       
T Consensus       342 lWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~  421 (764)
T KOG1063|consen  342 LWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQ  421 (764)
T ss_pred             EEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCce
Confidence            998433221 1111   123467888888888754422210                                       


Q ss_pred             --------------------------------------------------------------------------------
Q 022716          171 --------------------------------------------------------------------------------  170 (293)
Q Consensus       171 --------------------------------------------------------------------------------  170 (293)
                                                                                                      
T Consensus       422 FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~  501 (764)
T KOG1063|consen  422 FVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELT  501 (764)
T ss_pred             eeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhcc
Confidence                                                                                            


Q ss_pred             ------------------------CCEEEEEECCCCCEEEEecCCC-----cEEEEeCCCCEEEEEeeccCCCeeEEEEc
Q 022716          171 ------------------------AGCYCIAIDPMGRYFAVGSADS-----LVSLWDISEMLCVRTFTKLEWPVRTISFS  221 (293)
Q Consensus       171 ------------------------~~~~~~~~~~~~~~l~~gs~d~-----~i~iwd~~~~~~~~~~~~~~~~v~~l~~s  221 (293)
                                              -.+++++.+|+++++|++....     .|++|+..+....+.+.+|.-.|+.++||
T Consensus       502 ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FS  581 (764)
T KOG1063|consen  502 EPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFS  581 (764)
T ss_pred             CCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEEC
Confidence                                    0267999999999999987654     58999999988888899999999999999


Q ss_pred             cCCCEEEEecCCCcEEEEEcCCCCEE-E----EEecCCCcceeEECCCCCeEEEEEcCCCCCC
Q 022716          222 HTGDYIASASEDLFIDISNVHTGRTV-H----QIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQ  279 (293)
Q Consensus       222 p~~~~l~s~s~d~~i~iw~~~~~~~~-~----~~~~~~~i~~~~~sp~~~~la~~~~d~~~~~  279 (293)
                      |||++|++.|.|.++.+|........ .    ...|..-|.+++|+|++.+||++|.|+.+..
T Consensus       582 pdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkV  644 (764)
T KOG1063|consen  582 PDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKV  644 (764)
T ss_pred             CCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEE
Confidence            99999999999999999998654321 1    1234445789999999999999999974333

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.93  E-value=4.3e-24  Score=174.61  Aligned_cols=248  Identities=19%  Similarity=0.279  Sum_probs=195.7

Q ss_pred             ceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCC-----c-------eeEEEe--eCCcCCeeEEEEcCCC
Q 022716           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHG-----K-------VKDIEL--RGHADSVDQLCWDPKH   78 (293)
Q Consensus        13 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~-----~-------~~~~~~--~~h~~~i~~~~~~~~~   78 (293)
                      .+.+..|.-+|.|++++|++++..+++.||+|.=|++......     .       ....+.  .+|...+.+++.+++ 
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~D-  213 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSD-  213 (479)
T ss_pred             ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCC-
Confidence            4667789999999999999999999999999999998653211     0       000112  378899999999987 


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCeeeeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEE
Q 022716           79 ADLIATASGDKTVRLWDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAW  157 (293)
Q Consensus        79 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~  157 (293)
                      +.+|++|+.|..|.||+.++.+.+..+. +.+.+.+++|-.....+++++.|..+++|++.....+..            
T Consensus       214 gkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vet------------  281 (479)
T KOG0299|consen  214 GKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVET------------  281 (479)
T ss_pred             CcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHH------------
Confidence            5799999999999999999988777754 557788899988778999999999999999876443221            


Q ss_pred             ecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEE
Q 022716          158 NMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFID  237 (293)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~  237 (293)
                              +-.|++.+..|....-.+.+.+|+.|+++++|++..-.+ ..+.++...+.+++|- +...+++||+||.|.
T Consensus       282 --------lyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesq-lifrg~~~sidcv~~I-n~~HfvsGSdnG~Ia  351 (479)
T KOG0299|consen  282 --------LYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQ-LIFRGGEGSIDCVAFI-NDEHFVSGSDNGSIA  351 (479)
T ss_pred             --------HhCCccceeeechhcccceEEeccccceeEEEeccccce-eeeeCCCCCeeeEEEe-cccceeeccCCceEE
Confidence                    123556667777777788888899999999999954333 3577888899999995 456789999999999


Q ss_pred             EEEcCCCCEEEEEe--cC-----------CCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeee
Q 022716          238 ISNVHTGRTVHQIP--CR-----------AAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE  291 (293)
Q Consensus       238 iw~~~~~~~~~~~~--~~-----------~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~  291 (293)
                      +|++.+.+.+....  +.           ..|++|+-.|..+++|+|+.+        |-+|+|.+|
T Consensus       352 LWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~--------G~vrLW~i~  410 (479)
T KOG0299|consen  352 LWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWS--------GCVRLWKIE  410 (479)
T ss_pred             EeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCC--------CceEEEEec
Confidence            99998887765432  11           157889999999999999987        566777765

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=1.1e-24  Score=171.01  Aligned_cols=244  Identities=23%  Similarity=0.329  Sum_probs=192.6

Q ss_pred             cceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (293)
Q Consensus        12 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i   91 (293)
                      ..++|.||+..|..++-....+.+.+++.|.+.+||.+++.    .....+.||.+.|+++.|++. +.++++++.|++.
T Consensus       140 lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg----~CL~~Y~GH~GSVNsikfh~s-~~L~lTaSGD~ta  214 (481)
T KOG0300|consen  140 LVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESG----ACLATYTGHTGSVNSIKFHNS-GLLLLTASGDETA  214 (481)
T ss_pred             ehhhhcccccceeeehhhcCCcceeecccccceeEEeeccc----cceeeecccccceeeEEeccc-cceEEEccCCcch
Confidence            45788999999999998888888999999999999999864    234567899999999999986 5799999999999


Q ss_pred             EEEe------CCCC--------e----------------------e--eeeeee---cCceEEEEEcCCCCEEEEEeCCC
Q 022716           92 RLWD------ARSG--------K----------------------C--SQQAEL---SGENINITYKPDGTHIAVGNRDD  130 (293)
Q Consensus        92 ~vwd------~~~~--------~----------------------~--~~~~~~---~~~~~~~~~~~~~~~l~~~~~d~  130 (293)
                      .||.      +...        +                      .  ...+.+   .+.+.++.|-..|+++++++.|.
T Consensus       215 HIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDR  294 (481)
T KOG0300|consen  215 HIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDR  294 (481)
T ss_pred             HHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccc
Confidence            9995      1110        0                      0  000111   12244566778899999999999


Q ss_pred             eEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCC-EEEEEee
Q 022716          131 ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM-LCVRTFT  209 (293)
Q Consensus       131 ~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~-~~~~~~~  209 (293)
                      +-.+||+++..+++.                    ++.++...+-++-+|..+++++.+.|-+.++||.+.. ..+..|.
T Consensus       295 TAnlwDVEtge~v~~--------------------LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQ  354 (481)
T KOG0300|consen  295 TANLWDVETGEVVNI--------------------LTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQ  354 (481)
T ss_pred             cceeeeeccCceecc--------------------ccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeec
Confidence            999999998876653                    2334445556677899999999999999999998743 3466789


Q ss_pred             ccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCC-CEEEEEecCCCcceeEECCCCCeEEEEEcCCCCCCCC
Q 022716          210 KLEWPVRTISFSHTGDYIASASEDLFIDISNVHTG-RTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQAD  281 (293)
Q Consensus       210 ~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~-~~~~~~~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~  281 (293)
                      +|...|+++.|+.+. .+++||+|.+|++||++.- ..+-.+...++++.++.+.-+.+||.--+++.++++|
T Consensus       355 GHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfD  426 (481)
T KOG0300|consen  355 GHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFD  426 (481)
T ss_pred             ccccceeEEEEecCC-ceeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCceEEEEe
Confidence            999999999998765 5889999999999999764 4566777888999999999888999987765443333

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=1.8e-24  Score=183.57  Aligned_cols=241  Identities=20%  Similarity=0.279  Sum_probs=190.9

Q ss_pred             ceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEE
Q 022716           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (293)
Q Consensus        13 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~   92 (293)
                      ...+..|.+.|..+....+|+.|+++|.|-+|++|+.......+  ...+..|.+.|.++++-..+..+++|||-|+.|.
T Consensus        66 ~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c--~stir~H~DYVkcla~~ak~~~lvaSgGLD~~If  143 (735)
T KOG0308|consen   66 IASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFC--MSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIF  143 (735)
T ss_pred             hhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchh--HhhhhcccchheeeeecccCceeEEecCCCccEE
Confidence            45567899999999999999999999999999999987543112  2246789999999999444567999999999999


Q ss_pred             EEeCCCCee--eeeee----------ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecC
Q 022716           93 LWDARSGKC--SQQAE----------LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMT  160 (293)
Q Consensus        93 vwd~~~~~~--~~~~~----------~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~  160 (293)
                      +||+.++..  ...++          ....+++++..+.|..++.|+..+-+++||.++.+.+..               
T Consensus       144 lWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimk---------------  208 (735)
T KOG0308|consen  144 LWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMK---------------  208 (735)
T ss_pred             EEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceee---------------
Confidence            999997732  21111          123466788889999999999999999999988654322               


Q ss_pred             CCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEE
Q 022716          161 GEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISN  240 (293)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~  240 (293)
                           +..|...+-++-++++|+.++++++||+|++||+...+++.++..|...|.++.-+|+=.++.+|+.|+.|+.-|
T Consensus       209 -----LrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Td  283 (735)
T KOG0308|consen  209 -----LRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTD  283 (735)
T ss_pred             -----eeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecc
Confidence                 224555677888899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCC-EEEEEecCCCcceeEECCCCCeEEEEEcCC
Q 022716          241 VHTGR-TVHQIPCRAAMNSVEWNPKYNLLAYAGDDK  275 (293)
Q Consensus       241 ~~~~~-~~~~~~~~~~i~~~~~sp~~~~la~~~~d~  275 (293)
                      +.+.. ....+....+|..+..+-+.+.+=++..|.
T Consensus       284 l~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds  319 (735)
T KOG0308|consen  284 LRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDS  319 (735)
T ss_pred             cCCchhheEeecCCCchhhhhhccccCCceeeeccc
Confidence            98853 334445556777777775554433444443

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=4.8e-24  Score=173.63  Aligned_cols=231  Identities=23%  Similarity=0.424  Sum_probs=173.5

Q ss_pred             CCCeEEEEeCCCcEEEeecCCCCCC--ce---------------eEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEE
Q 022716           31 TGTKLASGSVDQTARVWHIEPHGHG--KV---------------KDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL   93 (293)
Q Consensus        31 ~~~~l~s~~~dg~v~iw~~~~~~~~--~~---------------~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~v   93 (293)
                      .|+++|.|..|-.|.|||++-...-  ..               ....-.+|++.|.+++|+....++|+|||.|.+|++
T Consensus       191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l  270 (463)
T KOG0270|consen  191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL  270 (463)
T ss_pred             CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence            3689999999999999998742210  00               001123688899999999888889999999999999


Q ss_pred             EeCCCCeeeeeeee-cCceEEEEEcCC-CCEEEEEeCCCeEEEEEccccc-eeeeecccceeeeeEEecCCCEEEEecCC
Q 022716           94 WDARSGKCSQQAEL-SGENINITYKPD-GTHIAVGNRDDELTILDVRKFK-PIHRRKFGYEVNEIAWNMTGEMFFLTTGN  170 (293)
Q Consensus        94 wd~~~~~~~~~~~~-~~~~~~~~~~~~-~~~l~~~~~d~~i~l~d~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  170 (293)
                      ||+.++++...+.. ...+.++.|+|. ...|++|+.|+++.+.|.|... .-...++..++..+.|++..         
T Consensus       271 WD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~s---------  341 (463)
T KOG0270|consen  271 WDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHS---------  341 (463)
T ss_pred             EEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCC---------
Confidence            99999999988874 556778999874 5689999999999999998522 22333444555555554332         


Q ss_pred             CCEEEEEECCCCCEEEEecCCCcEEEEeCCCC-EEEEEeeccCCCeeEEEEccCC-CEEEEecCCCcEEEEEcCCCC--E
Q 022716          171 AGCYCIAIDPMGRYFAVGSADSLVSLWDISEM-LCVRTFTKLEWPVRTISFSHTG-DYIASASEDLFIDISNVHTGR--T  246 (293)
Q Consensus       171 ~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~-~~~~~~~~~~~~v~~l~~sp~~-~~l~s~s~d~~i~iw~~~~~~--~  246 (293)
                                 -..+++++.||+|+-+|+++. .++.+++.|..+|.+|++++.- .+|+|+|.|+.+++|++..-.  .
T Consensus       342 -----------e~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~  410 (463)
T KOG0270|consen  342 -----------ENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKS  410 (463)
T ss_pred             -----------ceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcc
Confidence                       235677889999999999875 8888999999999999999875 468999999999999986533  2


Q ss_pred             E--EEEecCCCcceeEECCCCC-eEEEEEcCCCCCCCCcceEEEEee
Q 022716          247 V--HQIPCRAAMNSVEWNPKYN-LLAYAGDDKNKYQADEGVFRIYGF  290 (293)
Q Consensus       247 ~--~~~~~~~~i~~~~~sp~~~-~la~~~~d~~~~~~~~~~~~~~~~  290 (293)
                      +  +.+.. +...|.++.|+-. .||+||..        +++|||++
T Consensus       411 v~~~~~~~-~rl~c~~~~~~~a~~la~GG~k--------~~~~vwd~  448 (463)
T KOG0270|consen  411 VKEHSFKL-GRLHCFALDPDVAFTLAFGGEK--------AVLRVWDI  448 (463)
T ss_pred             cccccccc-cceeecccCCCcceEEEecCcc--------ceEEEeec
Confidence            2  22222 2256777888775 57777754        57788875

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.93  E-value=2.5e-23  Score=159.54  Aligned_cols=209  Identities=18%  Similarity=0.282  Sum_probs=172.1

Q ss_pred             EEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEcc
Q 022716           60 IELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVR  138 (293)
Q Consensus        60 ~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~  138 (293)
                      +.++||+.+++.+.++.+ +++|+||+.|..+.+|-..+|+.+..+. +.+.+.++....+.+.+++|+.|.+++|||.+
T Consensus         4 i~l~GHERplTqiKyN~e-GDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~   82 (327)
T KOG0643|consen    4 ILLQGHERPLTQIKYNRE-GDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVE   82 (327)
T ss_pred             cccccCccccceEEecCC-CcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcC
Confidence            457899999999999976 5899999999999999998998888876 45678899999999999999999999999999


Q ss_pred             ccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCC-------CCEEEEEeecc
Q 022716          139 KFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDIS-------EMLCVRTFTKL  211 (293)
Q Consensus       139 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~-------~~~~~~~~~~~  211 (293)
                      +++.+...+.+..++.+.|++.+.+..+......                +..+.|.++|++       ..++...+..+
T Consensus        83 tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~m----------------g~~~~v~~fdi~~~~~~~~s~ep~~kI~t~  146 (327)
T KOG0643|consen   83 TGKQLATWKTNSPVKRVDFSFGGNLILASTDKQM----------------GYTCFVSVFDIRDDSSDIDSEEPYLKIPTP  146 (327)
T ss_pred             CCcEEEEeecCCeeEEEeeccCCcEEEEEehhhc----------------CcceEEEEEEccCChhhhcccCceEEecCC
Confidence            9999988888888877777666555443332110                123568889887       34556667777


Q ss_pred             CCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEE--ecCCCcceeEECCCCCeEEEEEcCCCCCCCCcceE
Q 022716          212 EWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQI--PCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVF  285 (293)
Q Consensus       212 ~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~--~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~  285 (293)
                      +..++..-|.|-+++|++|.+||.|.+||..+|+++..-  .+...|+++.++|+..++++++.|.+..++|...+
T Consensus       147 ~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl  222 (327)
T KOG0643|consen  147 DSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTL  222 (327)
T ss_pred             ccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccce
Confidence            889999999999999999999999999999998765432  34558999999999999999999998888777554

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=4e-24  Score=167.78  Aligned_cols=247  Identities=20%  Similarity=0.318  Sum_probs=189.7

Q ss_pred             ccceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecC------CCC------------------------------C
Q 022716           11 LHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIE------PHG------------------------------H   54 (293)
Q Consensus        11 ~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~------~~~------------------------------~   54 (293)
                      .+...|.||.+.|.++.|++.+.+++||+.|++..||...      .+.                              .
T Consensus       181 ~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~t  260 (481)
T KOG0300|consen  181 ACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHT  260 (481)
T ss_pred             cceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCce
Confidence            4567899999999999999999999999999999999721      100                              0


Q ss_pred             CceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeeeecCce-EEEEEcCCCCEEEEEeCCCeEE
Q 022716           55 GKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGEN-INITYKPDGTHIAVGNRDDELT  133 (293)
Q Consensus        55 ~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~d~~i~  133 (293)
                      -+.....+.+|...|.+..|.. +++.++++++|.+..+||+.++..+..+..+... ..+..+|..+++++.+.|.+++
T Consensus       261 iRvPl~~ltgH~~vV~a~dWL~-gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFR  339 (481)
T KOG0300|consen  261 IRVPLMRLTGHRAVVSACDWLA-GGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFR  339 (481)
T ss_pred             eeeeeeeeeccccceEehhhhc-CcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeE
Confidence            0122345789999999999975 4678999999999999999999988877655443 4577789999999999999999


Q ss_pred             EEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCC
Q 022716          134 ILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEW  213 (293)
Q Consensus       134 l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~  213 (293)
                      +||.+..-           ..+        ..+..+...++++.|..+. .+++|++|.+|++||+++++..--....+.
T Consensus       340 LWDFReaI-----------~sV--------~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIRtdS  399 (481)
T KOG0300|consen  340 LWDFREAI-----------QSV--------AVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIRTDS  399 (481)
T ss_pred             eccchhhc-----------cee--------eeecccccceeEEEEecCC-ceeecCCCceEEEeeeccccCcceeeecCC
Confidence            99987421           111        1234556677888887655 579999999999999998865433345677


Q ss_pred             CeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEE-----EEecCCCcceeEECCCC--CeEEEEEcCCCCC
Q 022716          214 PVRTISFSHTGDYIASASEDLFIDISNVHTGRTVH-----QIPCRAAMNSVEWNPKY--NLLAYAGDDKNKY  278 (293)
Q Consensus       214 ~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~-----~~~~~~~i~~~~~sp~~--~~la~~~~d~~~~  278 (293)
                      +++-++.+..+..+|.--++..|+++|+...+..+     .-.++..|.+++|..+-  .-|.++|-|+-..
T Consensus       400 ~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~  471 (481)
T KOG0300|consen  400 PANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVA  471 (481)
T ss_pred             ccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceee
Confidence            99999999888899998999999999997654321     12356679999996443  4577888886433

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=9.7e-25  Score=188.40  Aligned_cols=237  Identities=20%  Similarity=0.334  Sum_probs=179.3

Q ss_pred             EEEEEEC-CCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCee
Q 022716           23 VHSVAWN-CTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKC  101 (293)
Q Consensus        23 v~~l~~s-~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~  101 (293)
                      +..+.|+ -+.++|||++..|.|-+||+..... ......+..|+..++.+.|++....+|+|||.||+|++||++..+-
T Consensus        90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~r-nk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S  168 (839)
T KOG0269|consen   90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIR-NKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS  168 (839)
T ss_pred             hhhcccccchhhhheeecCCCcEEEEecCcccc-chhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence            4455565 2467899999999999999974211 1122346789999999999999899999999999999999987765


Q ss_pred             eeeeee-cCceEEEEEcC-CCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEEC
Q 022716          102 SQQAEL-SGENINITYKP-DGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAID  179 (293)
Q Consensus       102 ~~~~~~-~~~~~~~~~~~-~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  179 (293)
                      ...+.. ...+..+.|+| .+.+++++...|.+.+||+|......                   ..+..|.+++.|+.++
T Consensus       169 ~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~-------------------~k~~AH~GpV~c~nwh  229 (839)
T KOG0269|consen  169 KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCE-------------------KKLTAHNGPVLCLNWH  229 (839)
T ss_pred             cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHH-------------------HHhhcccCceEEEeec
Confidence            554433 33456789987 56789999999999999998643211                   2245788899999999


Q ss_pred             CCCCEEEEecCCCcEEEEeCCCCEEEEEee-ccCCCeeEEEEccCCCE-EEEec--CCCcEEEEEcCCCCEE-EEEe-cC
Q 022716          180 PMGRYFAVGSADSLVSLWDISEMLCVRTFT-KLEWPVRTISFSHTGDY-IASAS--EDLFIDISNVHTGRTV-HQIP-CR  253 (293)
Q Consensus       180 ~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~-~~~~~v~~l~~sp~~~~-l~s~s--~d~~i~iw~~~~~~~~-~~~~-~~  253 (293)
                      |++.+||+|+.|+.|+|||+...+.-.... ....+|..|.|=|..++ ||+++  .|..|+|||+...... ..+. ++
T Consensus       230 Pnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~  309 (839)
T KOG0269|consen  230 PNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHT  309 (839)
T ss_pred             CCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccC
Confidence            999999999999999999987543322222 23468999999998764 78887  4788999999876654 3443 45


Q ss_pred             CCcceeEECC-CCCeEEEEEcCCCCCC
Q 022716          254 AAMNSVEWNP-KYNLLAYAGDDKNKYQ  279 (293)
Q Consensus       254 ~~i~~~~~sp-~~~~la~~~~d~~~~~  279 (293)
                      ..++.++|-. +-..+-+++.|+.+.+
T Consensus       310 ~~vt~i~W~~~d~~~l~s~sKD~tv~q  336 (839)
T KOG0269|consen  310 DSVTGIAWDSGDRINLWSCSKDGTVLQ  336 (839)
T ss_pred             ccccceeccCCCceeeEeecCccHHHH
Confidence            5678899954 4567888888876654

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=1.2e-23  Score=164.77  Aligned_cols=246  Identities=17%  Similarity=0.329  Sum_probs=180.8

Q ss_pred             EEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeee
Q 022716           23 VHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCS  102 (293)
Q Consensus        23 v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~  102 (293)
                      ..|+.||+-|.+||.|..||.|.|||+....    ....+.+|..+|.+++|++++ .+|+|++.|..|.+||+..|.+.
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~----iar~lsaH~~pi~sl~WS~dg-r~LltsS~D~si~lwDl~~gs~l  100 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR----IARMLSAHVRPITSLCWSRDG-RKLLTSSRDWSIKLWDLLKGSPL  100 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccc----hhhhhhccccceeEEEecCCC-CEeeeecCCceeEEEeccCCCce
Confidence            7899999999999999999999999998643    223477999999999999975 67889999999999999999999


Q ss_pred             eeeeecCceEEEEEcCCCCEEEEEe-CCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCC
Q 022716          103 QQAELSGENINITYKPDGTHIAVGN-RDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPM  181 (293)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (293)
                      +.+.+.+++..+.|+|.....++.+ -+..-.+.++..  +.+..        +.-+.++.+-..      ..+..|++-
T Consensus       101 ~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~--~~h~~--------Lp~d~d~dln~s------as~~~fdr~  164 (405)
T KOG1273|consen  101 KRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSD--PKHSV--------LPKDDDGDLNSS------ASHGVFDRR  164 (405)
T ss_pred             eEEEccCccceeeeccccCCeEEEEEecCCcEEEEecC--Cceee--------ccCCCccccccc------cccccccCC
Confidence            9999999999999998654433332 122223333222  11110        001111111111      113368899


Q ss_pred             CCEEEEecCCCcEEEEeCCCCEEEEEeeccC-CCeeEEEEccCCCEEEEecCCCcEEEEEcCCC----C--EE---EEEe
Q 022716          182 GRYFAVGSADSLVSLWDISEMLCVRTFTKLE-WPVRTISFSHTGDYIASASEDLFIDISNVHTG----R--TV---HQIP  251 (293)
Q Consensus       182 ~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~-~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~----~--~~---~~~~  251 (293)
                      |+++.+|+..|.+.++|..+.+++..++... ..|..+.|+..|+.|+..+.|..|+.|+...-    +  .+   ++++
T Consensus       165 g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~q  244 (405)
T KOG1273|consen  165 GKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQ  244 (405)
T ss_pred             CCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHH
Confidence            9999999999999999999999998887766 78999999999999999999999999998631    1  11   2221


Q ss_pred             ---cCCCcceeEECCCCCeEEEEEcC-CCCCCCCc--ceE-EEEe
Q 022716          252 ---CRAAMNSVEWNPKYNLLAYAGDD-KNKYQADE--GVF-RIYG  289 (293)
Q Consensus       252 ---~~~~i~~~~~sp~~~~la~~~~d-~~~~~~~~--~~~-~~~~  289 (293)
                         .+..=+++.||.+|.|++.++.. -.+|||+.  |.+ ||++
T Consensus       245 DvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILh  289 (405)
T KOG1273|consen  245 DVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILH  289 (405)
T ss_pred             HHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeec
Confidence               12223578899999998888743 36777776  333 6654

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.92  E-value=1.7e-23  Score=186.89  Aligned_cols=250  Identities=21%  Similarity=0.337  Sum_probs=189.3

Q ss_pred             ecCcc-ccEEEEEECCCCCeEEEEe--CCCcEEEeecCCCC-------C-CceeEEEeeCCcCCeeEEEEcCCCCCEEEE
Q 022716           16 YTGHK-KKVHSVAWNCTGTKLASGS--VDQTARVWHIEPHG-------H-GKVKDIELRGHADSVDQLCWDPKHADLIAT   84 (293)
Q Consensus        16 ~~~h~-~~v~~l~~s~~~~~l~s~~--~dg~v~iw~~~~~~-------~-~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s   84 (293)
                      +-+|. ..|-++..+|||..++||+  .|+.++||+.++-.       . -.........|.+.|+++.|+|+ +.+|++
T Consensus         8 wv~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~d-G~~lAs   86 (942)
T KOG0973|consen    8 WVNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPD-GSYLAS   86 (942)
T ss_pred             ccccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCC-CCeEee
Confidence            33454 5799999999999999999  89999999875311       0 01112345579999999999997 479999


Q ss_pred             EeCCCeEEEEeCCC----Ce--------------eeeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeee
Q 022716           85 ASGDKTVRLWDARS----GK--------------CSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR  145 (293)
Q Consensus        85 ~~~d~~i~vwd~~~----~~--------------~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~  145 (293)
                      |+.|+.|.||....    ..              +...+. +.+.+..+.|+|++.+|++++.|++|.+|+.+++..+..
T Consensus        87 GSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~v  166 (942)
T KOG0973|consen   87 GSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKV  166 (942)
T ss_pred             ccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeee
Confidence            99999999998662    00              112222 345567899999999999999999999999999865443


Q ss_pred             ecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccC------CCeeEEE
Q 022716          146 RKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLE------WPVRTIS  219 (293)
Q Consensus       146 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~------~~v~~l~  219 (293)
                      .                    ..|.+.+.-+.|+|.|+|+|+-+.|++|++|++.++...+.+.++-      .-..-+.
T Consensus       167 l--------------------~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlS  226 (942)
T KOG0973|consen  167 L--------------------RGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLS  226 (942)
T ss_pred             e--------------------ecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecc
Confidence            2                    3445556667889999999999999999999988877777766543      2467799


Q ss_pred             EccCCCEEEEec----CCCcEEEEEcCCCCE-EEEEecCCCcceeEECCC-----CC------------eEEEEEcCCCC
Q 022716          220 FSHTGDYIASAS----EDLFIDISNVHTGRT-VHQIPCRAAMNSVEWNPK-----YN------------LLAYAGDDKNK  277 (293)
Q Consensus       220 ~sp~~~~l~s~s----~d~~i~iw~~~~~~~-~~~~~~~~~i~~~~~sp~-----~~------------~la~~~~d~~~  277 (293)
                      |||||++|++..    .-.++.|.+-.+.+. +..+.|+.++..+.|+|.     .+            .+|+||.|+.+
T Consensus       227 WSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSl  306 (942)
T KOG0973|consen  227 WSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSL  306 (942)
T ss_pred             cCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccE
Confidence            999999999874    234577877766553 445578889999999974     11            68999999988


Q ss_pred             CCCCcceEE
Q 022716          278 YQADEGVFR  286 (293)
Q Consensus       278 ~~~~~~~~~  286 (293)
                      -+|..+-.|
T Consensus       307 SVW~T~~~R  315 (942)
T KOG0973|consen  307 SVWNTALPR  315 (942)
T ss_pred             EEEecCCCC
Confidence            777665443

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.92  E-value=2.1e-23  Score=162.48  Aligned_cols=209  Identities=20%  Similarity=0.338  Sum_probs=162.8

Q ss_pred             ecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCC-CCEEEEEeCCCeEEEE
Q 022716           16 YTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKH-ADLIATASGDKTVRLW   94 (293)
Q Consensus        16 ~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~-~~~l~s~~~d~~i~vw   94 (293)
                      ...|.++|.+++|+.||..+++|+.|+.+++||+.++   +  ...+..|.++|..+.|-+.. ..+|+|||+|++++.|
T Consensus        68 ~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~---Q--~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfW  142 (347)
T KOG0647|consen   68 QQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG---Q--VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFW  142 (347)
T ss_pred             hhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC---C--eeeeeecccceeEEEEecCCCcceeEecccccceeec
Confidence            3468899999999999999999999999999999864   2  23467899999999996542 3589999999999999


Q ss_pred             eCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceee---eecccceeeeeEEecCCC---------
Q 022716           95 DARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIH---RRKFGYEVNEIAWNMTGE---------  162 (293)
Q Consensus        95 d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~---~~~~~~~~~~v~~~~~~~---------  162 (293)
                      |.+....+..+++.+.+.++....  ..++++..++.|.++++++.....   ...+...+++|+-..+.+         
T Consensus       143 D~R~~~pv~t~~LPeRvYa~Dv~~--pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEG  220 (347)
T KOG0647|consen  143 DTRSSNPVATLQLPERVYAADVLY--PMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEG  220 (347)
T ss_pred             ccCCCCeeeeeeccceeeehhccC--ceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecc
Confidence            999999999999999888876543  377888889999999996543211   112233344443332222         


Q ss_pred             --------------EEEEecCC------C---CEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEE
Q 022716          163 --------------MFFLTTGN------A---GCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTIS  219 (293)
Q Consensus       163 --------------~~~~~~~~------~---~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~  219 (293)
                                    .+.+-+|.      +   .+.+|+|+|.-..|++++.||+..+||-....++++.+.|..+|++.+
T Consensus       221 rv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~  300 (347)
T KOG0647|consen  221 RVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCS  300 (347)
T ss_pred             eEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeE
Confidence                          22233332      1   245689999999999999999999999887777888888999999999


Q ss_pred             EccCCCEEEEec
Q 022716          220 FSHTGDYIASAS  231 (293)
Q Consensus       220 ~sp~~~~l~s~s  231 (293)
                      |+.+|.++|-+.
T Consensus       301 fn~~G~ifaYA~  312 (347)
T KOG0647|consen  301 FNRNGSIFAYAL  312 (347)
T ss_pred             ecCCCCEEEEEe
Confidence            999999987764

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.92  E-value=2.4e-23  Score=161.80  Aligned_cols=209  Identities=24%  Similarity=0.413  Sum_probs=164.5

Q ss_pred             cCccccEEEEEECC-CCCeEEEEeCCCcEEEeecCCCCCCc----e-eEE------EeeCCcCCeeEEEEcCCCCCEEEE
Q 022716           17 TGHKKKVHSVAWNC-TGTKLASGSVDQTARVWHIEPHGHGK----V-KDI------ELRGHADSVDQLCWDPKHADLIAT   84 (293)
Q Consensus        17 ~~h~~~v~~l~~s~-~~~~l~s~~~dg~v~iw~~~~~~~~~----~-~~~------~~~~h~~~i~~~~~~~~~~~~l~s   84 (293)
                      .-|.+.|.+|...+ .|+++++|+.||.|-+||++.-..-+    + ...      ...+|+-.|..+.|-|-+...+.|
T Consensus        40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts  119 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS  119 (397)
T ss_pred             ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence            36889999999987 57899999999999999997432100    0 001      123577789999999988889999


Q ss_pred             EeCCCeEEEEeCCCCeeeeeeeecCceEEEEEcCCC---CEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCC
Q 022716           85 ASGDKTVRLWDARSGKCSQQAELSGENINITYKPDG---THIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTG  161 (293)
Q Consensus        85 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~  161 (293)
                      ++.|.+++|||..+-+....+..++.+.+-+++|-.   -++++|..|-.|++.|+.++...+.                
T Consensus       120 sSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~----------------  183 (397)
T KOG4283|consen  120 SSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHT----------------  183 (397)
T ss_pred             ccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceee----------------
Confidence            999999999999998888888888988888887743   4788888999999999988665443                


Q ss_pred             CEEEEecCCCCEEEEEECCCCCE-EEEecCCCcEEEEeCCCC-EEEEE--------------eeccCCCeeEEEEccCCC
Q 022716          162 EMFFLTTGNAGCYCIAIDPMGRY-FAVGSADSLVSLWDISEM-LCVRT--------------FTKLEWPVRTISFSHTGD  225 (293)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~-l~~gs~d~~i~iwd~~~~-~~~~~--------------~~~~~~~v~~l~~sp~~~  225 (293)
                          +..+...+.++.|+|...+ |++|+.||.|++||++.- -+...              -..|...|+.++|+.++.
T Consensus       184 ----LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~  259 (397)
T KOG4283|consen  184 ----LSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDAR  259 (397)
T ss_pred             ----eccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccch
Confidence                3345566677777777655 789999999999999753 22222              234667899999999999


Q ss_pred             EEEEecCCCcEEEEEcCCCC
Q 022716          226 YIASASEDLFIDISNVHTGR  245 (293)
Q Consensus       226 ~l~s~s~d~~i~iw~~~~~~  245 (293)
                      ++++++.|..+++|+...|+
T Consensus       260 ~l~~~gtd~r~r~wn~~~G~  279 (397)
T KOG4283|consen  260 YLASCGTDDRIRVWNMESGR  279 (397)
T ss_pred             hhhhccCccceEEeecccCc
Confidence            99999999999999988764

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=9.9e-24  Score=172.79  Aligned_cols=221  Identities=15%  Similarity=0.199  Sum_probs=173.3

Q ss_pred             ccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCC
Q 022716           19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS   98 (293)
Q Consensus        19 h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~   98 (293)
                      -.++|+|++-+|+|.+|+.|.-.|.+.+|.+.+.   . ....+.+|-..|+++.|+.+ +..|+|||.||.|.+|++..
T Consensus        80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG---~-LL~v~~aHYQ~ITcL~fs~d-gs~iiTgskDg~V~vW~l~~  154 (476)
T KOG0646|consen   80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSG---I-LLNVLSAHYQSITCLKFSDD-GSHIITGSKDGAVLVWLLTD  154 (476)
T ss_pred             cccceeeeecCCCceEEEeecccCcEEEEEeccc---c-HHHHHHhhccceeEEEEeCC-CcEEEecCCCccEEEEEEEe
Confidence            3578999999999999999989999999999753   2 22346789999999999876 56899999999999997521


Q ss_pred             -------C--eeeeeeeecC-ceEEEEE--cCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEE
Q 022716           99 -------G--KCSQQAELSG-ENINITY--KPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFL  166 (293)
Q Consensus        99 -------~--~~~~~~~~~~-~~~~~~~--~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  166 (293)
                             .  .....+..+. +++.+..  .+....+++.+.|.++++||+.....+....+                  
T Consensus       155 lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~f------------------  216 (476)
T KOG0646|consen  155 LVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITF------------------  216 (476)
T ss_pred             ecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEec------------------
Confidence                   1  1222232222 2334444  34457899999999999999987665554433                  


Q ss_pred             ecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCC----------------CEEEEEeeccCC--CeeEEEEccCCCEEE
Q 022716          167 TTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISE----------------MLCVRTFTKLEW--PVRTISFSHTGDYIA  228 (293)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~----------------~~~~~~~~~~~~--~v~~l~~sp~~~~l~  228 (293)
                         ...+.+++++|.++.+-+|+++|.|.+.++.+                +..++.+.+|.+  +|++++++-||..|+
T Consensus       217 ---p~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLl  293 (476)
T KOG0646|consen  217 ---PSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLL  293 (476)
T ss_pred             ---CCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEE
Confidence               33456788899999999999999998887632                234556778887  999999999999999


Q ss_pred             EecCCCcEEEEEcCCCCEEEEEe-cCCCcceeEECCCC
Q 022716          229 SASEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKY  265 (293)
Q Consensus       229 s~s~d~~i~iw~~~~~~~~~~~~-~~~~i~~~~~sp~~  265 (293)
                      +|+.||.+.|||+.+.+.++.+. .+++|+.+.+.|-.
T Consensus       294 SGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~  331 (476)
T KOG0646|consen  294 SGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLE  331 (476)
T ss_pred             eeCCCCCEEEEecchHHHHHHHhhhccccceeEeeccc
Confidence            99999999999999999898887 78899999997743

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.92  E-value=3.3e-23  Score=180.32  Aligned_cols=277  Identities=16%  Similarity=0.195  Sum_probs=193.4

Q ss_pred             cccccccc-----eeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCC
Q 022716            6 IPFKNLHS-----REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHAD   80 (293)
Q Consensus         6 ~~~~~~~~-----~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~   80 (293)
                      +-||++..     .....|.+.|..+.|-|....++|++.|+.+++|-.++............||..+-.++.|....+.
T Consensus       269 m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~  348 (910)
T KOG1539|consen  269 MAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGH  348 (910)
T ss_pred             EEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcE
Confidence            44555543     4456898999999999999999999999999999777543222222234588888888888766667


Q ss_pred             EEEEEeCCCeEEEEeCCCC-------------------------------------------------------------
Q 022716           81 LIATASGDKTVRLWDARSG-------------------------------------------------------------   99 (293)
Q Consensus        81 ~l~s~~~d~~i~vwd~~~~-------------------------------------------------------------   99 (293)
                      .+.+++.|++.+.+++...                                                             
T Consensus       349 ~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~  428 (910)
T KOG1539|consen  349 FILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWN  428 (910)
T ss_pred             EEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEe
Confidence            7888888887766653211                                                             


Q ss_pred             ----ee-eeeeee------cCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeee----cccceeeeeEEecCCCEE
Q 022716          100 ----KC-SQQAEL------SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRR----KFGYEVNEIAWNMTGEMF  164 (293)
Q Consensus       100 ----~~-~~~~~~------~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~----~~~~~~~~v~~~~~~~~~  164 (293)
                          .. ...+..      ...+.+++.++-|+..+.|++.|.|.++++.++......    -+..++..++-+..++.+
T Consensus       429 ~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~  508 (910)
T KOG1539|consen  429 FRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLL  508 (910)
T ss_pred             ccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceE
Confidence                00 000000      012345677888899999999999999999876544433    123344444433322222


Q ss_pred             EEecCC--------------------CCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCC
Q 022716          165 FLTTGN--------------------AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTG  224 (293)
Q Consensus       165 ~~~~~~--------------------~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~  224 (293)
                      ..++.+                    ..+.++..+.....++.+..|-.|+++|..+.+.++.|.+|.+.|++++|||||
T Consensus       509 vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~Dg  588 (910)
T KOG1539|consen  509 VSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDG  588 (910)
T ss_pred             EEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCC
Confidence            211111                    123344444445555555555566666655555566778899999999999999


Q ss_pred             CEEEEecCCCcEEEEEcCCCCEEEEEecCCCcceeEECCCCCeEEEEEcC-CCCCCCCc
Q 022716          225 DYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDD-KNKYQADE  282 (293)
Q Consensus       225 ~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~d-~~~~~~~~  282 (293)
                      ++|++++.|++|++||+.++.++..+....+..++.|||+|.+||++.-| ..+|+|.+
T Consensus       589 rWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWsN  647 (910)
T KOG1539|consen  589 RWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWSN  647 (910)
T ss_pred             cEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEecCceEEEEEc
Confidence            99999999999999999999999988888999999999999999999998 45666655

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.92  E-value=1e-21  Score=163.55  Aligned_cols=244  Identities=14%  Similarity=0.171  Sum_probs=177.0

Q ss_pred             ceeecCccccEEEEEECCCCCeE-EEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716           13 SREYTGHKKKVHSVAWNCTGTKL-ASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (293)
Q Consensus        13 ~~~~~~h~~~v~~l~~s~~~~~l-~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i   91 (293)
                      .+.+.+|. .+.+++|+|+|+.+ ++++.|+.|++||+....   .. ..+..+.. +..+.++|++..++++++.++.+
T Consensus        24 ~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~---~~-~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l   97 (300)
T TIGR03866        24 TRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGE---VI-GTLPSGPD-PELFALHPNGKILYIANEDDNLV   97 (300)
T ss_pred             EEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCc---EE-EeccCCCC-ccEEEECCCCCEEEEEcCCCCeE
Confidence            34455444 46789999999876 677889999999987431   11 12333333 45678898865455566678999


Q ss_pred             EEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCC-eEEEEEccccceeeeecccceeeeeEEecCCCEEEEecC-
Q 022716           92 RLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDD-ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG-  169 (293)
Q Consensus        92 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~-~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-  169 (293)
                      ++||+.+.+.+..+.....+..++++|+|+.++++..++ .+.+||.++.........+.....+.|++.+..+++... 
T Consensus        98 ~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~  177 (300)
T TIGR03866        98 TVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEI  177 (300)
T ss_pred             EEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCC
Confidence            999999877766665555567899999999999988765 567789887665544434444566778877776554332 


Q ss_pred             CC----------------------------CEEEEEECCCCCEEEE-ecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEE
Q 022716          170 NA----------------------------GCYCIAIDPMGRYFAV-GSADSLVSLWDISEMLCVRTFTKLEWPVRTISF  220 (293)
Q Consensus       170 ~~----------------------------~~~~~~~~~~~~~l~~-gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~  220 (293)
                      ..                            ....++++|+++++++ ...++.+.+||.++++....+. +...+.+++|
T Consensus       178 ~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~  256 (300)
T TIGR03866       178 GGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAF  256 (300)
T ss_pred             CCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEE
Confidence            10                            0124678999988544 4557789999999887765543 3457899999


Q ss_pred             ccCCCEEEEe-cCCCcEEEEEcCCCCEEEEEecCCCcceeEECC
Q 022716          221 SHTGDYIASA-SEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNP  263 (293)
Q Consensus       221 sp~~~~l~s~-s~d~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp  263 (293)
                      +|+|++|+++ +.++.|.+||..+++.+..++.....+.|+++|
T Consensus       257 ~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~  300 (300)
T TIGR03866       257 TPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGRLPWGVVVRP  300 (300)
T ss_pred             CCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcccccceeEeCC
Confidence            9999999876 568999999999999988888777778888876

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.92  E-value=8.6e-25  Score=171.97  Aligned_cols=221  Identities=22%  Similarity=0.282  Sum_probs=179.7

Q ss_pred             ecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEe
Q 022716           16 YTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWD   95 (293)
Q Consensus        16 ~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd   95 (293)
                      |+-|..+|.|+.||.|...||+|+.||.|++|.+....+   ....-++|...|+++.|+.++ ..++|++.|.++++--
T Consensus       259 fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~C---lRrFdrAHtkGvt~l~FSrD~-SqiLS~sfD~tvRiHG  334 (508)
T KOG0275|consen  259 FMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQC---LRRFDRAHTKGVTCLSFSRDN-SQILSASFDQTVRIHG  334 (508)
T ss_pred             eeecccceEEEeecccHHHhhccCcCCcEEEEEEecchH---HHHhhhhhccCeeEEEEccCc-chhhcccccceEEEec
Confidence            556789999999999999999999999999999975421   111234899999999999875 4677999999999999


Q ss_pred             CCCCeeeeeeeecCc-eEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecc---cceeeeeEEecCCCEEEEecC--
Q 022716           96 ARSGKCSQQAELSGE-NINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF---GYEVNEIAWNMTGEMFFLTTG--  169 (293)
Q Consensus        96 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~--  169 (293)
                      +++|+++..+..+.. +....|++||..++++++||++++|+.++..++...+.   +..++.+-.-|..+.-++.++  
T Consensus       335 lKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrs  414 (508)
T KOG0275|consen  335 LKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRS  414 (508)
T ss_pred             cccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCC
Confidence            999999888775544 55688999999999999999999999988776665543   234555444343322111111  


Q ss_pred             ----------------------CCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEE
Q 022716          170 ----------------------NAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYI  227 (293)
Q Consensus       170 ----------------------~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l  227 (293)
                                            .+...+..++|.|.++-+.+.|+.++.|.+.++...+++.-|+..|-.++-+|-.+.+
T Consensus       415 ntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNll  494 (508)
T KOG0275|consen  415 NTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLL  494 (508)
T ss_pred             CeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchh
Confidence                                  1345677889999999999999999999999999888999999999999999999999


Q ss_pred             EEecCCCcEEEEE
Q 022716          228 ASASEDLFIDISN  240 (293)
Q Consensus       228 ~s~s~d~~i~iw~  240 (293)
                      |+=++||.+++|.
T Consensus       495 AsYsEDgllKLWk  507 (508)
T KOG0275|consen  495 ASYSEDGLLKLWK  507 (508)
T ss_pred             hhhcccchhhhcC
Confidence            9999999999995

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.92  E-value=5.5e-23  Score=164.49  Aligned_cols=240  Identities=20%  Similarity=0.292  Sum_probs=173.4

Q ss_pred             CccccEEEEEECCCCC--eEEEEeCCCcEEEeecCCCC------------CCceeEEEeeCCcCCeeEEEEcCCCCCEEE
Q 022716           18 GHKKKVHSVAWNCTGT--KLASGSVDQTARVWHIEPHG------------HGKVKDIELRGHADSVDQLCWDPKHADLIA   83 (293)
Q Consensus        18 ~h~~~v~~l~~s~~~~--~l~s~~~dg~v~iw~~~~~~------------~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~   83 (293)
                      +|.+.+..+.-++-++  ..++=+..|.|+||++.+.-            .......++.+|...-+.++|+|.....|+
T Consensus       149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll  228 (440)
T KOG0302|consen  149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL  228 (440)
T ss_pred             ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence            6777777777776654  44555668999999986421            011123457789988999999996555688


Q ss_pred             EEeCCCeEEEEeCCCCeeee----eeeecCceEEEEEcCCC-CEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEe
Q 022716           84 TASGDKTVRLWDARSGKCSQ----QAELSGENINITYKPDG-THIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWN  158 (293)
Q Consensus        84 s~~~d~~i~vwd~~~~~~~~----~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~  158 (293)
                      ||.+-+.|++|...++....    ...+...+-.++|+|.. ..+++|+.|+.|+|||+|.....               
T Consensus       229 sGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~---------------  293 (440)
T KOG0302|consen  229 SGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKK---------------  293 (440)
T ss_pred             cCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCcc---------------
Confidence            99999999999987775322    12233445568999964 57889999999999999975211               


Q ss_pred             cCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCC---CEEEEEeeccCCCeeEEEEccC-CCEEEEecCCC
Q 022716          159 MTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISE---MLCVRTFTKLEWPVRTISFSHT-GDYIASASEDL  234 (293)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~---~~~~~~~~~~~~~v~~l~~sp~-~~~l~s~s~d~  234 (293)
                         .-+....+++.+..|.|+..-.+||+|+.||+++|||+++   +.++.+|+.|..+|++|.|+|. ...++.++.|.
T Consensus       294 ---~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~  370 (440)
T KOG0302|consen  294 ---AAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDN  370 (440)
T ss_pred             ---ceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCC
Confidence               1112234445556666667777999999999999999976   4567789999999999999986 46788999999


Q ss_pred             cEEEEEcCCCC-------------------EEEEEecCCCcceeEECCCC-CeEEEEEcCC
Q 022716          235 FIDISNVHTGR-------------------TVHQIPCRAAMNSVEWNPKY-NLLAYAGDDK  275 (293)
Q Consensus       235 ~i~iw~~~~~~-------------------~~~~~~~~~~i~~~~~sp~~-~~la~~~~d~  275 (293)
                      .|.|||+....                   ++..-+....+..+.|++.. .++++++.|+
T Consensus       371 QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG  431 (440)
T KOG0302|consen  371 QITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG  431 (440)
T ss_pred             cEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc
Confidence            99999985321                   11111234568899999976 4677777775

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.92  E-value=1.2e-23  Score=164.52  Aligned_cols=210  Identities=20%  Similarity=0.317  Sum_probs=165.9

Q ss_pred             EEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCC------C------Cee------ee-eeeecCceEEEEEcCC
Q 022716           59 DIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDAR------S------GKC------SQ-QAELSGENINITYKPD  119 (293)
Q Consensus        59 ~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~------~------~~~------~~-~~~~~~~~~~~~~~~~  119 (293)
                      ...+..|+.++.+.+|+|++ .+++||+.|-.|++.|+.      .      +..      ++ .+.+-..+..+.|+|.
T Consensus       105 t~ylt~HK~~cR~aafs~DG-~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr  183 (430)
T KOG0640|consen  105 TKYLTSHKSPCRAAAFSPDG-SLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR  183 (430)
T ss_pred             eEEEeecccceeeeeeCCCC-cEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecch
Confidence            44577899999999999975 699999999999999975      1      100      01 1122345567999999


Q ss_pred             CCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeC
Q 022716          120 GTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDI  199 (293)
Q Consensus       120 ~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~  199 (293)
                      ...|++|+.|++++++|..+....+..+.                  .....++-++.|+|.|.+|++|+.-.++++||+
T Consensus       184 e~ILiS~srD~tvKlFDfsK~saKrA~K~------------------~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv  245 (430)
T KOG0640|consen  184 ETILISGSRDNTVKLFDFSKTSAKRAFKV------------------FQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDV  245 (430)
T ss_pred             hheEEeccCCCeEEEEecccHHHHHHHHH------------------hhccceeeeEeecCCCceEEEecCCCceeEEec
Confidence            99999999999999999865432222111                  112234668999999999999999999999999


Q ss_pred             CCCEEEEEe---eccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEe---cCCCcceeEECCCCCeEEEEEc
Q 022716          200 SEMLCVRTF---TKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP---CRAAMNSVEWNPKYNLLAYAGD  273 (293)
Q Consensus       200 ~~~~~~~~~---~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~---~~~~i~~~~~sp~~~~la~~~~  273 (293)
                      .+..+.-.-   .+|...|+++.+|+.|+.-+|||.||.|+|||.-+.+++..+.   ....|.+..|..+++++.+.|+
T Consensus       246 ~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~  325 (430)
T KOG0640|consen  246 NTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGK  325 (430)
T ss_pred             cceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCC
Confidence            988766443   3577899999999999999999999999999999988887653   3457999999999999999999


Q ss_pred             CCCCCCCCcceEEE
Q 022716          274 DKNKYQADEGVFRI  287 (293)
Q Consensus       274 d~~~~~~~~~~~~~  287 (293)
                      |...+.|+-++.|.
T Consensus       326 DS~vkLWEi~t~R~  339 (430)
T KOG0640|consen  326 DSTVKLWEISTGRM  339 (430)
T ss_pred             cceeeeeeecCCce
Confidence            98777776665544

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.91  E-value=5.7e-23  Score=168.01  Aligned_cols=249  Identities=18%  Similarity=0.266  Sum_probs=182.9

Q ss_pred             eeecCccccEEEEEECCCCC--eEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716           14 REYTGHKKKVHSVAWNCTGT--KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (293)
Q Consensus        14 ~~~~~h~~~v~~l~~s~~~~--~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i   91 (293)
                      ..+.-|..+|++++|.|.-+  .+|+|+.-|+|-+||+..+.......+.+..|..+|.++.|+|.+...+++.|.||+|
T Consensus       180 ~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGti  259 (498)
T KOG4328|consen  180 NVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTI  259 (498)
T ss_pred             ceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCcee
Confidence            33456788999999999765  6788999999999999633222223345778999999999999988899999999999


Q ss_pred             EEEeCCCCeeeeeeeec---CceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEec
Q 022716           92 RLWDARSGKCSQQAELS---GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTT  168 (293)
Q Consensus        92 ~vwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  168 (293)
                      ++-|+..+.....+...   .....+.|+.+...++.+..=|.+.+||+|......                   ..+..
T Consensus       260 R~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~-------------------~~~~l  320 (498)
T KOG4328|consen  260 RLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEY-------------------ENLRL  320 (498)
T ss_pred             eeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccc-------------------hhhhh
Confidence            99999876543333331   123457787777778888777799999998754311                   11122


Q ss_pred             CCCCEEEEEECCCCC-EEEEecCCCcEEEEeCCCCEE----EEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcC-
Q 022716          169 GNAGCYCIAIDPMGR-YFAVGSADSLVSLWDISEMLC----VRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVH-  242 (293)
Q Consensus       169 ~~~~~~~~~~~~~~~-~l~~gs~d~~i~iwd~~~~~~----~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~-  242 (293)
                      +...|..++++|... ++|+++.|++++|||+++...    +-....|.-.|.+..|||.+..|+|-+.|..|+|||.. 
T Consensus       321 h~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~  400 (498)
T KOG4328|consen  321 HKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSC  400 (498)
T ss_pred             hhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeeccc
Confidence            333567889999864 589999999999999976432    22334688899999999998889999999999999983 


Q ss_pred             ---CCCEEEEEec----CC--CcceeEECCCCCeEEEEEcCCCCCCCC
Q 022716          243 ---TGRTVHQIPC----RA--AMNSVEWNPKYNLLAYAGDDKNKYQAD  281 (293)
Q Consensus       243 ---~~~~~~~~~~----~~--~i~~~~~sp~~~~la~~~~d~~~~~~~  281 (293)
                         .-.....+.|    ..  ..-..+|.|+.++|++|-.-+-+=+.+
T Consensus       401 ~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~  448 (498)
T KOG4328|consen  401 ISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFD  448 (498)
T ss_pred             ccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEc
Confidence               2223333332    12  234678999999999998765444433

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.91  E-value=2.8e-23  Score=171.82  Aligned_cols=249  Identities=16%  Similarity=0.260  Sum_probs=187.4

Q ss_pred             cCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCc-eeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEe
Q 022716           17 TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGK-VKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWD   95 (293)
Q Consensus        17 ~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~-~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd   95 (293)
                      ..|..-|.+++.|...+.+.||+. |.|||||+....... ...+....-.+.|.++...|++. -|++|++-.++.|||
T Consensus       416 L~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgr-tLivGGeastlsiWD  493 (705)
T KOG0639|consen  416 LAHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGR-TLIVGGEASTLSIWD  493 (705)
T ss_pred             hccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCc-eEEeccccceeeeee
Confidence            368888999999999999999885 889999996432111 11111222346788888999764 566899999999999


Q ss_pred             CCCCeeeeeeeecC---ceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCC
Q 022716           96 ARSGKCSQQAELSG---ENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAG  172 (293)
Q Consensus        96 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  172 (293)
                      +......-..++..   ....++.+||.+..+++..||.|.+||+++...++.+.                    .+.+.
T Consensus       494 LAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vrqfq--------------------GhtDG  553 (705)
T KOG0639|consen  494 LAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQ--------------------GHTDG  553 (705)
T ss_pred             ccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeeccc--------------------CCCCC
Confidence            97765433333332   23457889999999999999999999999876655432                    34566


Q ss_pred             EEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEe-
Q 022716          173 CYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP-  251 (293)
Q Consensus       173 ~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~-  251 (293)
                      ..||.++++|..|.+|+-|++|+.||++.++.+... .....|.++.++|++.+|+.|=+.+.+.+-.....+ .+++. 
T Consensus       554 ascIdis~dGtklWTGGlDntvRcWDlregrqlqqh-dF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~-kyqlhl  631 (705)
T KOG0639|consen  554 ASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQH-DFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE-KYQLHL  631 (705)
T ss_pred             ceeEEecCCCceeecCCCccceeehhhhhhhhhhhh-hhhhhheecccCCCccceeeecccCcEEEEecCCcc-ceeecc
Confidence            789999999999999999999999999998655332 223579999999999999999999988887764433 34443 


Q ss_pred             cCCCcceeEECCCCCeEEEEEcCCCCCCCCc-ceEEEEe
Q 022716          252 CRAAMNSVEWNPKYNLLAYAGDDKNKYQADE-GVFRIYG  289 (293)
Q Consensus       252 ~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~-~~~~~~~  289 (293)
                      +.+-|-++.|++-|+.+++.|.|.-+.-|.. +=.+|++
T Consensus       632 heScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFq  670 (705)
T KOG0639|consen  632 HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ  670 (705)
T ss_pred             cccEEEEEEecccCceeeecCchhhhhhccCccccceee
Confidence            4456889999999999999999986655554 3234444

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.91  E-value=6.1e-23  Score=175.48  Aligned_cols=241  Identities=20%  Similarity=0.269  Sum_probs=188.4

Q ss_pred             cceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeE-EEEcCCCCCEEEEEeCCCe
Q 022716           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQ-LCWDPKHADLIATASGDKT   90 (293)
Q Consensus        12 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~-~~~~~~~~~~l~s~~~d~~   90 (293)
                      ..+++.||+..|..+++.+. ..++++|.||++++|+-..+.  -.....+.+|.+.|.. +++-+.+...+++|+.|.+
T Consensus         6 ls~~l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~--~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~   82 (745)
T KOG0301|consen    6 LSHELEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQ--YLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTT   82 (745)
T ss_pred             eEEEeccCccchheeEecCC-eEEeecCCCCceeeeeccCcc--cccceecccCcceeeccceeccccCcceEeecccce
Confidence            34678899999999997754 489999999999999864322  1222346678887776 7776544446889999999


Q ss_pred             EEEEeCCCCeeeeeeeecC-ceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecC
Q 022716           91 VRLWDARSGKCSQQAELSG-ENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG  169 (293)
Q Consensus        91 i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  169 (293)
                      +.+|...+......+..|. .+.++....++. +++|+.|.++++|-......                      .+..|
T Consensus        83 i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l~~----------------------~l~gH  139 (745)
T KOG0301|consen   83 IIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGELVY----------------------SLQGH  139 (745)
T ss_pred             EEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchhhhc----------------------ccCCc
Confidence            9999998888877766544 455566566666 99999999999998643221                      13456


Q ss_pred             CCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEE
Q 022716          170 NAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQ  249 (293)
Q Consensus       170 ~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~  249 (293)
                      ...+++++.-|++ .++||+.|.+|++|.-  ++.+++|.+|..-|+.+++-|++ .+++++.||.|++|+. +|..+..
T Consensus       140 ~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~  214 (745)
T KOG0301|consen  140 TASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLE  214 (745)
T ss_pred             chheeeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeee
Confidence            7778888888888 8899999999999975  66789999999999999998876 4779999999999999 6777666


Q ss_pred             Ee-cCCCcceeEECCCCCeEEEEEcCCCCCCCCcc
Q 022716          250 IP-CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEG  283 (293)
Q Consensus       250 ~~-~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~  283 (293)
                      +. +.+-+-+++-.+++..++++|.|+.+.||+.+
T Consensus       215 ~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~  249 (745)
T KOG0301|consen  215 MHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD  249 (745)
T ss_pred             eeccceEEEEEEecCCCCeEEEecCCceEEEeecC
Confidence            54 45557788877778899999999877777664

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.91  E-value=2e-21  Score=160.93  Aligned_cols=267  Identities=18%  Similarity=0.273  Sum_probs=186.5

Q ss_pred             CCcCccccccccee-------ecCc-cccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEE
Q 022716            2 GESSIPFKNLHSRE-------YTGH-KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC   73 (293)
Q Consensus         2 ~~~~~~~~~~~~~~-------~~~h-~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~   73 (293)
                      |++++.||....-.       |.++ ++-|.|++|.++|+ .+||.++|.|.||+....   .... ...+|.+.|.+++
T Consensus       220 Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~---~~~k-~~~aH~ggv~~L~  294 (626)
T KOG2106|consen  220 GKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTN---RISK-QVHAHDGGVFSLC  294 (626)
T ss_pred             CCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCc---eEEe-EeeecCCceEEEE
Confidence            67778887654322       3333 36799999999986 679999999999998532   2222 2339999999999


Q ss_pred             EcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeeeecC---ceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccc
Q 022716           74 WDPKHADLIATASGDKTVRLWDARSGKCSQQAELSG---ENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGY  150 (293)
Q Consensus        74 ~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~  150 (293)
                      ...++  .|+||+.|..|..|| ...+.++..+.+.   .+..++  +.+.-+++|+..+.|.-=.+.+...+....++.
T Consensus       295 ~lr~G--tllSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~--e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~d  369 (626)
T KOG2106|consen  295 MLRDG--TLLSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVA--EGKGDILVGTTRNFILQGTLENGFTLTVQGHGD  369 (626)
T ss_pred             EecCc--cEeecCccceEEecc-ccccccccccCchhcCCeeEEe--cCCCcEEEeeccceEEEeeecCCceEEEEeccc
Confidence            87653  466899999999999 4444444444433   333333  333337788777776655555544333333333


Q ss_pred             eeeeeEEecCCCEEE------------------EecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccC
Q 022716          151 EVNEIAWNMTGEMFF------------------LTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLE  212 (293)
Q Consensus       151 ~~~~v~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~  212 (293)
                      +...++-+|..+.+.                  ..--..++.|++|+|.| .+|.|+..|...+.|+++...+.... ..
T Consensus       370 elwgla~hps~~q~~T~gqdk~v~lW~~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~-d~  447 (626)
T KOG2106|consen  370 ELWGLATHPSKNQLLTCGQDKHVRLWNDHKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHT-DN  447 (626)
T ss_pred             ceeeEEcCCChhheeeccCcceEEEccCCceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEe-cC
Confidence            444444444333322                  22223567899999999 99999999999999999966554443 37


Q ss_pred             CCeeEEEEccCCCEEEEecCCCcEEEEEcCC-CCEEEEE--ecCCCcceeEECCCCCeEEEEEcCCCCCCC
Q 022716          213 WPVRTISFSHTGDYIASASEDLFIDISNVHT-GRTVHQI--PCRAAMNSVEWNPKYNLLAYAGDDKNKYQA  280 (293)
Q Consensus       213 ~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~-~~~~~~~--~~~~~i~~~~~sp~~~~la~~~~d~~~~~~  280 (293)
                      .+++.++|+|+|.+||.|+.|+.|+||-+.. +.+....  -..++|+.+.||+|++++.+-+-|=.+-.|
T Consensus       448 ~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW  518 (626)
T KOG2106|consen  448 EQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYW  518 (626)
T ss_pred             CceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEE
Confidence            8999999999999999999999999999865 4443322  223789999999999999998877555444

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.91  E-value=6.2e-22  Score=166.94  Aligned_cols=266  Identities=21%  Similarity=0.279  Sum_probs=192.0

Q ss_pred             cccccccceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEE
Q 022716            6 IPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATA   85 (293)
Q Consensus         6 ~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~   85 (293)
                      -||...+.-.|.||++.|.|+...|.|.+|++|+.||+||||.+....  ++....+   .+.|.+++|+|.....++.+
T Consensus       386 rPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgR--cvr~~~~---d~~I~~vaw~P~~~~~vLAv  460 (733)
T KOG0650|consen  386 RPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGR--CVRTVQF---DSEIRSVAWNPLSDLCVLAV  460 (733)
T ss_pred             CCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecce--EEEEEee---cceeEEEEecCCCCceeEEE
Confidence            367777778899999999999999999999999999999999997542  2222223   34799999999765555555


Q ss_pred             eCCCeEEEEeCCCCeee--------------------------------------eeeeecCceEEEEEcCCCCEEEEEe
Q 022716           86 SGDKTVRLWDARSGKCS--------------------------------------QQAELSGENINITYKPDGTHIAVGN  127 (293)
Q Consensus        86 ~~d~~i~vwd~~~~~~~--------------------------------------~~~~~~~~~~~~~~~~~~~~l~~~~  127 (293)
                      +.+..+.+-+..-|..+                                      ..+.+...+..+.|+..|.||++..
T Consensus       461 A~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~  540 (733)
T KOG0650|consen  461 AVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVM  540 (733)
T ss_pred             EecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEec
Confidence            55555555543222100                                      0111222344688999999999987


Q ss_pred             CC---CeEEEEEccccceeeee-cccceeeeeEEecCCCEEEEecCC--------------------CCEEEEEECCCCC
Q 022716          128 RD---DELTILDVRKFKPIHRR-KFGYEVNEIAWNMTGEMFFLTTGN--------------------AGCYCIAIDPMGR  183 (293)
Q Consensus       128 ~d---~~i~l~d~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~  183 (293)
                      .+   ..+.+.++.......-+ +-...++.+.|+|....++++...                    ..+..+++||.|.
T Consensus       541 ~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GD  620 (733)
T KOG0650|consen  541 PDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGD  620 (733)
T ss_pred             cCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCC
Confidence            54   46778887654333222 234568889999998877766543                    2466789999999


Q ss_pred             EEEEecCCCcEEEEeCCCC-EEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCC------C---EEEEEecC
Q 022716          184 YFAVGSADSLVSLWDISEM-LCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTG------R---TVHQIPCR  253 (293)
Q Consensus       184 ~l~~gs~d~~i~iwd~~~~-~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~------~---~~~~~~~~  253 (293)
                      -|+.|+.|+.+..||+.-. +..+++.-|...+++|+|++.-.++++|+.|+++.|+-..-.      -   .++.+..+
T Consensus       621 nli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH  700 (733)
T KOG0650|consen  621 NLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGH  700 (733)
T ss_pred             eEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCc
Confidence            9999999999999999754 344567778899999999999999999999999987743221      1   12333333


Q ss_pred             C-----CcceeEECCCCCeEEEEEcCCC
Q 022716          254 A-----AMNSVEWNPKYNLLAYAGDDKN  276 (293)
Q Consensus       254 ~-----~i~~~~~sp~~~~la~~~~d~~  276 (293)
                      .     .|-.+.|||....|.++|.|+.
T Consensus       701 ~~~~~~gVLd~~wHP~qpWLfsAGAd~t  728 (733)
T KOG0650|consen  701 EKTNDLGVLDTIWHPRQPWLFSAGADGT  728 (733)
T ss_pred             eeecccceEeecccCCCceEEecCCCce
Confidence            2     3556779999999999999853

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=8.1e-24  Score=189.87  Aligned_cols=247  Identities=21%  Similarity=0.350  Sum_probs=189.5

Q ss_pred             cccEEEEEECCCCCe----EEEEeCCCcEEEeecCCC--CCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEE
Q 022716           20 KKKVHSVAWNCTGTK----LASGSVDQTARVWHIEPH--GHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL   93 (293)
Q Consensus        20 ~~~v~~l~~s~~~~~----l~s~~~dg~v~iw~~~~~--~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~v   93 (293)
                      ..+-+.|+|.+.|..    ||.|..||.|-+||....  ............|++.|..+.|++..+++|+||+.||.|.|
T Consensus        64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i  143 (1049)
T KOG0307|consen   64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI  143 (1049)
T ss_pred             cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence            357889999988766    888999999999998652  11111122456799999999999998889999999999999


Q ss_pred             EeCCCCeeeeee---eecCceEEEEEcCC-CCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecC
Q 022716           94 WDARSGKCSQQA---ELSGENINITYKPD-GTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG  169 (293)
Q Consensus        94 wd~~~~~~~~~~---~~~~~~~~~~~~~~-~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  169 (293)
                      ||+++-+.....   ...+.+.+++|... ...|++++.+|+..+||+|..+++-.....                  ..
T Consensus       144 WDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~------------------~~  205 (1049)
T KOG0307|consen  144 WDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDT------------------PG  205 (1049)
T ss_pred             eccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccC------------------CC
Confidence            999875543332   23456778888753 456888888999999999987654332211                  11


Q ss_pred             CCCEEEEEECCCC-CEEEEecCCC---cEEEEeCCC-CEEEEEeeccCCCeeEEEEccCC-CEEEEecCCCcEEEEEcCC
Q 022716          170 NAGCYCIAIDPMG-RYFAVGSADS---LVSLWDISE-MLCVRTFTKLEWPVRTISFSHTG-DYIASASEDLFIDISNVHT  243 (293)
Q Consensus       170 ~~~~~~~~~~~~~-~~l~~gs~d~---~i~iwd~~~-~~~~~~~~~~~~~v~~l~~sp~~-~~l~s~s~d~~i~iw~~~~  243 (293)
                      ...+..++|||+. ..+++++.|.   .|.+||++. ...++.+++|...|.+++|++.+ ++|+|++.|+.|.+|+.++
T Consensus       206 ~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~t  285 (1049)
T KOG0307|consen  206 RMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNT  285 (1049)
T ss_pred             ccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCC
Confidence            2345678888886 4566665553   599999875 34567788999999999999977 8899999999999999999


Q ss_pred             CCEEEEEec-CCCcceeEECCCCC-eEEEEEcCCCCCCCCcceEEEEeeec
Q 022716          244 GRTVHQIPC-RAAMNSVEWNPKYN-LLAYAGDDKNKYQADEGVFRIYGFEN  292 (293)
Q Consensus       244 ~~~~~~~~~-~~~i~~~~~sp~~~-~la~~~~d~~~~~~~~~~~~~~~~~~  292 (293)
                      ++.+..++. ...+..+.|.|... .||.++-|        |.+-||+++.
T Consensus       286 gEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfd--------gkI~I~sl~~  328 (1049)
T KOG0307|consen  286 GEVLGELPAQGNWCFDVQWCPRNPSVMAAASFD--------GKISIYSLQG  328 (1049)
T ss_pred             ceEeeecCCCCcceeeeeecCCCcchhhhheec--------cceeeeeeec
Confidence            999998876 45699999999875 89999987        5666776653

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=6.2e-22  Score=168.24  Aligned_cols=231  Identities=20%  Similarity=0.357  Sum_probs=180.5

Q ss_pred             EEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeee
Q 022716           26 VAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQA  105 (293)
Q Consensus        26 l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~  105 (293)
                      +.|+ ..+.||.|. ...|.+|+....   ....+. .-+...|+++.|++++ ..|+.|..+|.|.|||....+....+
T Consensus       183 ldWs-s~n~laVal-g~~vylW~~~s~---~v~~l~-~~~~~~vtSv~ws~~G-~~LavG~~~g~v~iwD~~~~k~~~~~  255 (484)
T KOG0305|consen  183 LDWS-SANVLAVAL-GQSVYLWSASSG---SVTELC-SFGEELVTSVKWSPDG-SHLAVGTSDGTVQIWDVKEQKKTRTL  255 (484)
T ss_pred             hhcc-cCCeEEEEe-cceEEEEecCCC---ceEEeE-ecCCCceEEEEECCCC-CEEEEeecCCeEEEEehhhccccccc
Confidence            4566 344666665 468999997643   222222 1237889999999975 68899999999999999877766655


Q ss_pred             ee--cCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCC
Q 022716          106 EL--SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGR  183 (293)
Q Consensus       106 ~~--~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (293)
                      ..  ...+.+++|.  +..+.+|+.++.|..+|+|..+.....                   +..|...+--+.++++++
T Consensus       256 ~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~-------------------~~~H~qeVCgLkws~d~~  314 (484)
T KOG0305|consen  256 RGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVST-------------------LQGHRQEVCGLKWSPDGN  314 (484)
T ss_pred             cCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhh-------------------hhcccceeeeeEECCCCC
Confidence            54  4556678887  678999999999999999876543321                   112333455688899999


Q ss_pred             EEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccC-CCEEEEec--CCCcEEEEEcCCCCEEEEEecCCCcceeE
Q 022716          184 YFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHT-GDYIASAS--EDLFIDISNVHTGRTVHQIPCRAAMNSVE  260 (293)
Q Consensus       184 ~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~-~~~l~s~s--~d~~i~iw~~~~~~~~~~~~~~~~i~~~~  260 (293)
                      ++|+|+.|+.+.|||....+++..+.+|...|.+++|+|- ...||+|+  .|+.|++||+.++..+.......-|.+|.
T Consensus       315 ~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~  394 (484)
T KOG0305|consen  315 QLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLI  394 (484)
T ss_pred             eeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEE
Confidence            9999999999999999888888899999999999999994 56889875  79999999999999999998888999999


Q ss_pred             ECCCCCeEEEEEcCCCCCCCCcceEEEEee
Q 022716          261 WNPKYNLLAYAGDDKNKYQADEGVFRIYGF  290 (293)
Q Consensus       261 ~sp~~~~la~~~~d~~~~~~~~~~~~~~~~  290 (293)
                      |+|..+-|+++....      +..++||.+
T Consensus       395 Wsk~~kEi~sthG~s------~n~i~lw~~  418 (484)
T KOG0305|consen  395 WSKKYKELLSTHGYS------ENQITLWKY  418 (484)
T ss_pred             EcCCCCEEEEecCCC------CCcEEEEec
Confidence            999997777776542      236777766

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=7e-22  Score=154.92  Aligned_cols=207  Identities=21%  Similarity=0.277  Sum_probs=153.5

Q ss_pred             ccccceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCC
Q 022716            9 KNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD   88 (293)
Q Consensus         9 ~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d   88 (293)
                      .+..++.|.||+..|.+|+.+|-++.+++++.|++||+||+....+...    +  +...-...+|.|++ -+++.+...
T Consensus        89 dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~----l--~~~~~pi~AfDp~G-LifA~~~~~  161 (311)
T KOG1446|consen   89 DNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGL----L--NLSGRPIAAFDPEG-LIFALANGS  161 (311)
T ss_pred             cCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceE----E--ecCCCcceeECCCC-cEEEEecCC
Confidence            5567888999999999999999999999999999999999985432221    1  11222345788874 566666666


Q ss_pred             CeEEEEeCCCCee--eeeeee----cCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCC
Q 022716           89 KTVRLWDARSGKC--SQQAEL----SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGE  162 (293)
Q Consensus        89 ~~i~vwd~~~~~~--~~~~~~----~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~  162 (293)
                      ..|++||+++-..  ...+..    ..+...+.|+|||++++.++..+.+.+.|.=++........         .+.+ 
T Consensus       162 ~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~---------~~~~-  231 (311)
T KOG1446|consen  162 ELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSG---------YPNA-  231 (311)
T ss_pred             CeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEee---------ccCC-
Confidence            6999999976521  122222    23455799999999999999999999999766554333211         0110 


Q ss_pred             EEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeec-cCCCeeEEEEccCCCEEEEecCCCcEEEEEc
Q 022716          163 MFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK-LEWPVRTISFSHTGDYIASASEDLFIDISNV  241 (293)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~-~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~  241 (293)
                             ..-.....|+|+++++++|+.||+|++|+++++..+..+.+ +..++.++.|+|....+|+++.  .+.+|=.
T Consensus       232 -------~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s--~l~fw~p  302 (311)
T KOG1446|consen  232 -------GNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASS--NLVFWLP  302 (311)
T ss_pred             -------CCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCc--eEEEEec
Confidence                   11124578899999999999999999999999999999888 5789999999999888877654  4666644

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.90  E-value=2.8e-24  Score=184.36  Aligned_cols=220  Identities=23%  Similarity=0.359  Sum_probs=180.0

Q ss_pred             eEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeeee-cCceE
Q 022716           34 KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAEL-SGENI  112 (293)
Q Consensus        34 ~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~-~~~~~  112 (293)
                      ++.....+-.+++|+..          ++..|...+.++.. ......+++|++|..+-+|.+....+...+.. ...+-
T Consensus         6 ~~m~~~~~t~Lr~~~~~----------~~~~hsaav~~lk~-~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIe   74 (825)
T KOG0267|consen    6 FLMKTKRATKLRVWDTR----------EFVAHSAAVGCLKI-RKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIE   74 (825)
T ss_pred             ccceeeeeeccccccch----------hhhhhhhhhceeee-eccceeeccCCCceeeccccccCCchhheeeccCCcce
Confidence            34455556667788764          24468888887776 33457889999999999999876665555443 45566


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCC
Q 022716          113 NITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADS  192 (293)
Q Consensus       113 ~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~  192 (293)
                      ++.|+++...+++|+.+|+|++||+...+.++.                    +.++-..+.+++|+|-+.++|+|+.|.
T Consensus        75 Sl~f~~~E~LlaagsasgtiK~wDleeAk~vrt--------------------Ltgh~~~~~sv~f~P~~~~~a~gStdt  134 (825)
T KOG0267|consen   75 SLTFDTSERLLAAGSASGTIKVWDLEEAKIVRT--------------------LTGHLLNITSVDFHPYGEFFASGSTDT  134 (825)
T ss_pred             eeecCcchhhhcccccCCceeeeehhhhhhhhh--------------------hhccccCcceeeeccceEEeccccccc
Confidence            899999999999999999999999987654442                    335556678899999999999999999


Q ss_pred             cEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEe-cCCCcceeEECCCCCeEEEE
Q 022716          193 LVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAYA  271 (293)
Q Consensus       193 ~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~-~~~~i~~~~~sp~~~~la~~  271 (293)
                      .+.+||.+..-+.+.+.+|.+.+..++|+|+|+++++|++|..++|||...|+.++.+. +..++.+++|+|..-+++.|
T Consensus       135 d~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~G  214 (825)
T KOG0267|consen  135 DLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPG  214 (825)
T ss_pred             cceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccC
Confidence            99999999887889999999999999999999999999999999999999999988887 56789999999999999999


Q ss_pred             EcCCCCCCCCcce
Q 022716          272 GDDKNKYQADEGV  284 (293)
Q Consensus       272 ~~d~~~~~~~~~~  284 (293)
                      |.|+.+..|+..+
T Consensus       215 s~d~tv~f~dlet  227 (825)
T KOG0267|consen  215 SSDRTVRFWDLET  227 (825)
T ss_pred             CCCceeeeeccce
Confidence            9996444444443

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=1.5e-20  Score=141.37  Aligned_cols=240  Identities=22%  Similarity=0.341  Sum_probs=175.7

Q ss_pred             CccccEEEEEECCCCCeEEEEeCCCcEEEeecCC------CC----CC-ceeEEEeeCCcCCeeEEEEcCCCCCEEEEEe
Q 022716           18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEP------HG----HG-KVKDIELRGHADSVDQLCWDPKHADLIATAS   86 (293)
Q Consensus        18 ~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~------~~----~~-~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~   86 (293)
                      .-...|.+++|.|.|..-+.|+..++.||-....      ..    .+ ......-+.|.+.|++.+|+|. ++++++|+
T Consensus        30 ~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~-geliatgs  108 (350)
T KOG0641|consen   30 EDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPC-GELIATGS  108 (350)
T ss_pred             cchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCc-cCeEEecC
Confidence            3456899999999999999999999999864311      00    11 1112223458899999999997 47999999


Q ss_pred             CCCeEEEEeCCCCeeee-----eee-ecCceEEEEEcC----CCCEEEEEe-CCCeEEEEEccccceeeeecccceeeee
Q 022716           87 GDKTVRLWDARSGKCSQ-----QAE-LSGENINITYKP----DGTHIAVGN-RDDELTILDVRKFKPIHRRKFGYEVNEI  155 (293)
Q Consensus        87 ~d~~i~vwd~~~~~~~~-----~~~-~~~~~~~~~~~~----~~~~l~~~~-~d~~i~l~d~~~~~~~~~~~~~~~~~~v  155 (293)
                      +|++|++...+...+..     .+. +.+.+..++|-.    .+..|++++ .|..|.+-|-...+..+..         
T Consensus       109 ndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~---------  179 (350)
T KOG0641|consen  109 NDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHAL---------  179 (350)
T ss_pred             CCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceee---------
Confidence            99999998766554432     122 345566788743    245666655 3666777676655544332         


Q ss_pred             EEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeec--c-----CCCeeEEEEccCCCEEE
Q 022716          156 AWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK--L-----EWPVRTISFSHTGDYIA  228 (293)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~--~-----~~~v~~l~~sp~~~~l~  228 (293)
                                 ..+.+.+.++ ++-++-.+++|+.|.+|++||++-..+++++-.  |     ...|.+++..|.|++|+
T Consensus       180 -----------sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~  247 (350)
T KOG0641|consen  180 -----------SGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLA  247 (350)
T ss_pred             -----------cCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceee
Confidence                       2233344333 234677899999999999999987777776532  1     24699999999999999


Q ss_pred             EecCCCcEEEEEcCCCCEEEEE-ecCCCcceeEECCCCCeEEEEEcCCCCCC
Q 022716          229 SASEDLFIDISNVHTGRTVHQI-PCRAAMNSVEWNPKYNLLAYAGDDKNKYQ  279 (293)
Q Consensus       229 s~s~d~~i~iw~~~~~~~~~~~-~~~~~i~~~~~sp~~~~la~~~~d~~~~~  279 (293)
                      +|-.|....+||++.++.+..+ ++...|+++.|||.--|+.+++.|..+..
T Consensus       248 sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikl  299 (350)
T KOG0641|consen  248 SGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKL  299 (350)
T ss_pred             eccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEE
Confidence            9999999999999999998765 56778999999998899999999876654

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.90  E-value=9.1e-23  Score=162.49  Aligned_cols=232  Identities=18%  Similarity=0.327  Sum_probs=175.7

Q ss_pred             CcCccccccc----ceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCC
Q 022716            3 ESSIPFKNLH----SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKH   78 (293)
Q Consensus         3 ~~~~~~~~~~----~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~   78 (293)
                      ++.+..|++.    .+.+..|.+.|..|+++-  ..++|+|+|++|+.|..+..   ...  ...+ ...+..+.-+.. 
T Consensus        88 DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~---p~~--tilg-~s~~~gIdh~~~-  158 (433)
T KOG0268|consen   88 DGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGP---PLH--TILG-KSVYLGIDHHRK-  158 (433)
T ss_pred             CceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccCC---cce--eeec-cccccccccccc-
Confidence            3446666654    466889999999999986  67899999999999987631   111  1111 233445554433 


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCeeeeeeeecCc-eEEEEEcCCCC-EEEEEeCCCeEEEEEccccceeeeecccceeeeeE
Q 022716           79 ADLIATASGDKTVRLWDARSGKCSQQAELSGE-NINITYKPDGT-HIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIA  156 (293)
Q Consensus        79 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~-~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~  156 (293)
                      .+.++|+|++  |.|||.....++..+..... ..++.|+|-.. .|+++.+|+.|.|+|+|...|++........+.+.
T Consensus       159 ~~~FaTcGe~--i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~Is  236 (433)
T KOG0268|consen  159 NSVFATCGEQ--IDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTIC  236 (433)
T ss_pred             cccccccCce--eeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeecccccee
Confidence            4578888755  99999988777777776544 56789998655 55666699999999999999999999999999999


Q ss_pred             EecCCCEEEEecCC----------------------CCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEee-ccCC
Q 022716          157 WNMTGEMFFLTTGN----------------------AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT-KLEW  213 (293)
Q Consensus       157 ~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~-~~~~  213 (293)
                      |+|..-.+..+..+                      +.+..++|+|.|+.+++||-|.+|+||....+....... .-..
T Consensus       237 wnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq  316 (433)
T KOG0268|consen  237 WNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQ  316 (433)
T ss_pred             cCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhh
Confidence            99944333332221                      357789999999999999999999999998775443321 1235


Q ss_pred             CeeEEEEccCCCEEEEecCCCcEEEEEcCCCC
Q 022716          214 PVRTISFSHTGDYIASASEDLFIDISNVHTGR  245 (293)
Q Consensus       214 ~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~  245 (293)
                      .|.++.||.|.+|+++||+|+.|++|...-.+
T Consensus       317 ~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Ase  348 (433)
T KOG0268|consen  317 HVFCVKYSMDSKYIISGSDDGNVRLWKAKASE  348 (433)
T ss_pred             eeeEEEEeccccEEEecCCCcceeeeecchhh
Confidence            79999999999999999999999999875443

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.90  E-value=6.3e-22  Score=169.33  Aligned_cols=246  Identities=17%  Similarity=0.253  Sum_probs=180.1

Q ss_pred             CcCccccccccee------ecCccccEEE-EEECC-CCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEE
Q 022716            3 ESSIPFKNLHSRE------YTGHKKKVHS-VAWNC-TGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW   74 (293)
Q Consensus         3 ~~~~~~~~~~~~~------~~~h~~~v~~-l~~s~-~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~   74 (293)
                      +..+.+|..+..+      +.+|.+-|.+ ++|-+ ++-+|++|+.|.++.+|.+...    .....+.+|+..|.+++.
T Consensus        34 d~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~----~P~~~LkgH~snVC~ls~  109 (745)
T KOG0301|consen   34 DGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQA----EPLYTLKGHKSNVCSLSI  109 (745)
T ss_pred             CCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCC----Cchhhhhccccceeeeec
Confidence            3345555544333      4557777777 77775 4446999999999999988632    234568899999999986


Q ss_pred             cCCCCCEEEEEeCCCeEEEEeCCCCeeeeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceee
Q 022716           75 DPKHADLIATASGDKTVRLWDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVN  153 (293)
Q Consensus        75 ~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~  153 (293)
                      ..++  .++|||+|.++++|-.  +++...++ +...+..++.-|++ .+++|+.|.+|++|.-.+  .++..       
T Consensus       110 ~~~~--~~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~~--~l~tf-------  175 (745)
T KOG0301|consen  110 GEDG--TLISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGGT--LLKTF-------  175 (745)
T ss_pred             CCcC--ceEecccccceEEecc--hhhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccCCc--hhhhh-------
Confidence            5443  3889999999999965  34444444 34456677777877 899999999999998532  22221       


Q ss_pred             eeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCC
Q 022716          154 EIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASED  233 (293)
Q Consensus       154 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d  233 (293)
                                   ..|.+-+-.+++-|+ ..+++++.||.|++|++ +++++.++.+|..-+.+++..++++.++|+++|
T Consensus       176 -------------~gHtD~VRgL~vl~~-~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gED  240 (745)
T KOG0301|consen  176 -------------SGHTDCVRGLAVLDD-SHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGED  240 (745)
T ss_pred             -------------ccchhheeeeEEecC-CCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCC
Confidence                         123333445666554 45789999999999999 778888999999999999988999999999999


Q ss_pred             CcEEEEEcCCCCEEEEEec-CCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeeec
Q 022716          234 LFIDISNVHTGRTVHQIPC-RAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN  292 (293)
Q Consensus       234 ~~i~iw~~~~~~~~~~~~~-~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~~  292 (293)
                      ++++||+..  .....+.+ ...|.++.+-++|. |++|+.|        |.+|||..++
T Consensus       241 rtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SD--------G~VrVfT~~k  289 (745)
T KOG0301|consen  241 RTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSD--------GRVRVFTVDK  289 (745)
T ss_pred             ceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccC--------ceEEEEEecc
Confidence            999999987  44444443 33688888878775 5666666        6788887764

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.90  E-value=5.3e-22  Score=168.36  Aligned_cols=260  Identities=20%  Similarity=0.288  Sum_probs=179.9

Q ss_pred             ceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEE
Q 022716           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (293)
Q Consensus        13 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~   92 (293)
                      .+.+..|...|..+.|-|-..+|++++.|.++|+||+.........  .+.||...|.+++|.|.+..+|++|+.||.|.
T Consensus        93 lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~--~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~il  170 (720)
T KOG0321|consen   93 LKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGR--LNLGHTGSVKSECFMPTNPAVFCTGGRDGEIL  170 (720)
T ss_pred             hcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecce--eecccccccchhhhccCCCcceeeccCCCcEE
Confidence            3556789999999999996678999999999999999854322221  35699999999999999999999999999999


Q ss_pred             EEeCCCCe-------eeeeee-ecC--------------------ce---EEEEEcCCCCEEEEEeC-CCeEEEEEcccc
Q 022716           93 LWDARSGK-------CSQQAE-LSG--------------------EN---INITYKPDGTHIAVGNR-DDELTILDVRKF  140 (293)
Q Consensus        93 vwd~~~~~-------~~~~~~-~~~--------------------~~---~~~~~~~~~~~l~~~~~-d~~i~l~d~~~~  140 (293)
                      |||++-..       +..... +.+                    .+   +.+.+..|...|++++. |+.|++||+++.
T Consensus       171 lWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~  250 (720)
T KOG0321|consen  171 LWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKN  250 (720)
T ss_pred             EEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeeccc
Confidence            99985332       000000 000                    01   12445567788888887 999999999875


Q ss_pred             ceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCC--EEEEEeeccCC---Ce
Q 022716          141 KPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM--LCVRTFTKLEW---PV  215 (293)
Q Consensus       141 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~--~~~~~~~~~~~---~v  215 (293)
                      ....+.... .+..  +.      ......-.++++..+..|.+|.+...|++|++|++...  ..+..+.++..   .+
T Consensus       251 ~~~~r~ep~-~~~~--~~------t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~v  321 (720)
T KOG0321|consen  251 YTAYRQEPR-GSDK--YP------THSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYV  321 (720)
T ss_pred             ccccccCCC-cccC--cc------CcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeee
Confidence            533221100 0000  00      00011234678888888988888878999999998653  22333444322   23


Q ss_pred             eEEEEccCCCEEEEecCCCcEEEEEcCCCCEEE--EEecCCCcceeEECCCC-CeEEEEEcCCCCCCCCcceEEEEeeec
Q 022716          216 RTISFSHTGDYIASASEDLFIDISNVHTGRTVH--QIPCRAAMNSVEWNPKY-NLLAYAGDDKNKYQADEGVFRIYGFEN  292 (293)
Q Consensus       216 ~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~--~~~~~~~i~~~~~sp~~-~~la~~~~d~~~~~~~~~~~~~~~~~~  292 (293)
                      .+ ..+|++.+|++|+.|...++|.+.....-.  .+.+...|+++.|.|.- .-+|++++|        -.+|||.+++
T Consensus       322 ks-~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD--------~~~kiW~l~~  392 (720)
T KOG0321|consen  322 KS-ELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDD--------FRVKIWRLSN  392 (720)
T ss_pred             ee-ecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccC--------cceEEEeccC
Confidence            33 368999999999999999999998765432  23455579999999854 567888877        4678887765

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=3.6e-22  Score=163.73  Aligned_cols=208  Identities=20%  Similarity=0.310  Sum_probs=163.4

Q ss_pred             ceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCC-----CCCCceeEEEeeCCcCCeeEEEEcCCC-CCEEEEEe
Q 022716           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEP-----HGHGKVKDIELRGHADSVDQLCWDPKH-ADLIATAS   86 (293)
Q Consensus        13 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~-----~~~~~~~~~~~~~h~~~i~~~~~~~~~-~~~l~s~~   86 (293)
                      ...+.+|...|+|+.|+.||..|+|||.||.|.+|++..     ..........+..|.-+|+++...+-+ ...|+|+|
T Consensus       116 L~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS  195 (476)
T KOG0646|consen  116 LNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTAS  195 (476)
T ss_pred             HHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEec
Confidence            345679999999999999999999999999999998731     111233345688899999999876542 35799999


Q ss_pred             CCCeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCE-EE
Q 022716           87 GDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEM-FF  165 (293)
Q Consensus        87 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~  165 (293)
                      .|.++++||+-.+..+..+.++....+++.+|.++.+.+|+++|.|.+.++.+....+.     .++.-..++.+.. ..
T Consensus       196 ~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~-----~v~~k~~~~~~t~~~~  270 (476)
T KOG0646|consen  196 EDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSA-----GVNQKGRHEENTQINV  270 (476)
T ss_pred             CCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccc-----cccccccccccceeee
Confidence            99999999999999998888899999999999999999999999999988755332111     1111112222221 22


Q ss_pred             EecCCC--CEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCC
Q 022716          166 LTTGNA--GCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGD  225 (293)
Q Consensus       166 ~~~~~~--~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~  225 (293)
                      +..+..  .|+|++++-||..|++|+.||++.+||+.+..+++++....++|+.+.+.|--+
T Consensus       271 ~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~  332 (476)
T KOG0646|consen  271 LVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLER  332 (476)
T ss_pred             eccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeecccc
Confidence            334444  899999999999999999999999999999888888876788999999977543

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=5.3e-21  Score=163.32  Aligned_cols=237  Identities=18%  Similarity=0.281  Sum_probs=186.2

Q ss_pred             ccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCc-CCeeEEEEcCCCCCEEEEEeCCCeEEEEeCC
Q 022716           19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHA-DSVDQLCWDPKHADLIATASGDKTVRLWDAR   97 (293)
Q Consensus        19 h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~-~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~   97 (293)
                      -.++|.++||+.+.++||.+-.||.|.+|++....   .....+.++. ..|-.++|.+.  ..|+|.+.+|.|.-||+.
T Consensus        24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w---~~~~vi~g~~drsIE~L~W~e~--~RLFS~g~sg~i~EwDl~   98 (691)
T KOG2048|consen   24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNW---FLEPVIHGPEDRSIESLAWAEG--GRLFSSGLSGSITEWDLH   98 (691)
T ss_pred             eccceEEEEEeccCCceeeeccCCcEEEEccCCCc---eeeEEEecCCCCceeeEEEccC--CeEEeecCCceEEEEecc
Confidence            35799999999999999999999999999997632   2223455554 56999999853  457899999999999999


Q ss_pred             CCeeeeeeee-cCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEE
Q 022716           98 SGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCI  176 (293)
Q Consensus        98 ~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  176 (293)
                      +.+....+.. .+...+++.+|.++.++.|+.||.+..++...........++                  -..+.+.++
T Consensus        99 ~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~------------------rq~sRvLsl  160 (691)
T KOG2048|consen   99 TLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLM------------------RQKSRVLSL  160 (691)
T ss_pred             cCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecc------------------cccceEEEE
Confidence            9988877764 455678999999999999999997777777665544333222                  123567899


Q ss_pred             EECCCCCEEEEecCCCcEEEEeCCCCEEEEEe----ecc----CCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEE
Q 022716          177 AIDPMGRYFAVGSADSLVSLWDISEMLCVRTF----TKL----EWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVH  248 (293)
Q Consensus       177 ~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~----~~~----~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~  248 (293)
                      +|+|++..+++|+.||.|++||...+..+...    .+.    .--|.++.|-.++ .+++|..-|+|++||...+.++.
T Consensus       161 sw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiq  239 (691)
T KOG2048|consen  161 SWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQ  239 (691)
T ss_pred             EecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhh
Confidence            99999999999999999999999988665511    111    1236667766444 68999999999999999998876


Q ss_pred             EEe-cCCCcceeEECCCCCeEEEEEcCCCCCC
Q 022716          249 QIP-CRAAMNSVEWNPKYNLLAYAGDDKNKYQ  279 (293)
Q Consensus       249 ~~~-~~~~i~~~~~sp~~~~la~~~~d~~~~~  279 (293)
                      ... +...|.+++-+++++++.++|.|+.+.+
T Consensus       240 S~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~  271 (691)
T KOG2048|consen  240 SHSCHDADVLALAVADNEDRVFSAGVDPKIIQ  271 (691)
T ss_pred             hhhhhhcceeEEEEcCCCCeEEEccCCCceEE
Confidence            554 4567999999999999999999986655

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.89  E-value=1e-20  Score=148.33  Aligned_cols=226  Identities=16%  Similarity=0.337  Sum_probs=164.2

Q ss_pred             eEEEEeCCCcEEEeecCCCCCC----c----eeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeee
Q 022716           34 KLASGSVDQTARVWHIEPHGHG----K----VKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQA  105 (293)
Q Consensus        34 ~l~s~~~dg~v~iw~~~~~~~~----~----~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~  105 (293)
                      .|+.|+....|.=++++.....    +    .....+++|..+|++++.+   +.+++|||.|.+|+|||++.......+
T Consensus         3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs---~~~~aSGssDetI~IYDm~k~~qlg~l   79 (362)
T KOG0294|consen    3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS---GPYVASGSSDETIHIYDMRKRKQLGIL   79 (362)
T ss_pred             eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec---ceeEeccCCCCcEEEEeccchhhhcce
Confidence            3667777777776766543211    1    1123467899999999985   358999999999999999887665554


Q ss_pred             -eecCceEEEEEcCCCC--EEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCC
Q 022716          106 -ELSGENINITYKPDGT--HIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMG  182 (293)
Q Consensus       106 -~~~~~~~~~~~~~~~~--~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (293)
                       .+.+.+.++.|.++-.  .|++|+.||.|.+|+......+...                    -.+.+.++.+++||.+
T Consensus        80 l~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~sl--------------------K~H~~~Vt~lsiHPS~  139 (362)
T KOG0294|consen   80 LSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSL--------------------KAHKGQVTDLSIHPSG  139 (362)
T ss_pred             eccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeee--------------------cccccccceeEecCCC
Confidence             3456778899987665  8999999999999998876554432                    2345568889999999


Q ss_pred             CEEEEecCCCcEEEEeCCCCEEEEEee-------------------------------------ccCCC--eeEEEEccC
Q 022716          183 RYFAVGSADSLVSLWDISEMLCVRTFT-------------------------------------KLEWP--VRTISFSHT  223 (293)
Q Consensus       183 ~~l~~gs~d~~i~iwd~~~~~~~~~~~-------------------------------------~~~~~--v~~l~~sp~  223 (293)
                      ++-++.+.|+.+++||+-.++....+.                                     ...++  +.++.| -+
T Consensus       140 KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~-l~  218 (362)
T KOG0294|consen  140 KLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATF-LD  218 (362)
T ss_pred             ceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeee-cC
Confidence            999999999999999986553321110                                     01112  222222 24


Q ss_pred             CCEEEEecCCCcEEEEEcCCCCEEEEE-ecCCCcceeEE--CCCCCeEEEEEcCCCCCCCCcceEEEEeee
Q 022716          224 GDYIASASEDLFIDISNVHTGRTVHQI-PCRAAMNSVEW--NPKYNLLAYAGDDKNKYQADEGVFRIYGFE  291 (293)
Q Consensus       224 ~~~l~s~s~d~~i~iw~~~~~~~~~~~-~~~~~i~~~~~--sp~~~~la~~~~d~~~~~~~~~~~~~~~~~  291 (293)
                      +.+|++|++|+.|.+||..+......+ .+..+|.++.+  +|++.+|+++|.|+        .+|||+++
T Consensus       219 ~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG--------~I~vWd~~  281 (362)
T KOG0294|consen  219 GSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDG--------FIKVWDID  281 (362)
T ss_pred             CceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCc--------eEEEEEcc
Confidence            568999999999999999987776655 45678988884  68889999999995        55566554

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.89  E-value=6.6e-22  Score=164.13  Aligned_cols=218  Identities=20%  Similarity=0.281  Sum_probs=154.2

Q ss_pred             eEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCee-e----eeeeecC-ceEEEEEcCCCCEEEEEeCCCe
Q 022716           58 KDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKC-S----QQAELSG-ENINITYKPDGTHIAVGNRDDE  131 (293)
Q Consensus        58 ~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~-~----~~~~~~~-~~~~~~~~~~~~~l~~~~~d~~  131 (293)
                      ..+.+++|+..|.++++.|.+ ..|+||+.|-.|++||+..=.. .    ....... .+.+++|++.|..+++.+....
T Consensus       159 hEi~l~hgtk~Vsal~~Dp~G-aR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aq  237 (641)
T KOG0772|consen  159 HEIQLKHGTKIVSALAVDPSG-ARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQ  237 (641)
T ss_pred             ceEeccCCceEEEEeeecCCC-ceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcc
Confidence            356788999999999999975 5688999999999999853211 1    1111222 3457999999999999998999


Q ss_pred             EEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCC-CEEEEecCCCcEEEEeCCCCEE-EEEee
Q 022716          132 LTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMG-RYFAVGSADSLVSLWDISEMLC-VRTFT  209 (293)
Q Consensus       132 i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~gs~d~~i~iwd~~~~~~-~~~~~  209 (293)
                      .+++|-..+..+.-.+-..=|.        ++.....|-..++|.+|+|.. ..+++++.||+++|||+.+... ++.++
T Consensus       238 akl~DRdG~~~~e~~KGDQYI~--------Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik  309 (641)
T KOG0772|consen  238 AKLLDRDGFEIVEFSKGDQYIR--------DMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIK  309 (641)
T ss_pred             eeEEccCCceeeeeeccchhhh--------hhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEe
Confidence            9999976654333221110000        111122344567888999986 5799999999999999875432 22222


Q ss_pred             -----ccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCC--E-EEEEe-c--CCCcceeEECCCCCeEEEEEcCCCCC
Q 022716          210 -----KLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGR--T-VHQIP-C--RAAMNSVEWNPKYNLLAYAGDDKNKY  278 (293)
Q Consensus       210 -----~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~--~-~~~~~-~--~~~i~~~~~sp~~~~la~~~~d~~~~  278 (293)
                           +-.-++++++|+|+|+++|+|..||.|.+|+.....  . .+... |  ...|++|+||++|++|++-|.|    
T Consensus       310 ~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D----  385 (641)
T KOG0772|consen  310 TKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFD----  385 (641)
T ss_pred             eccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCC----
Confidence                 223478999999999999999999999999974322  1 12112 2  2369999999999999999988    


Q ss_pred             CCCcceEEEEeeec
Q 022716          279 QADEGVFRIYGFEN  292 (293)
Q Consensus       279 ~~~~~~~~~~~~~~  292 (293)
                          +++|+|++.+
T Consensus       386 ----~tLKvWDLrq  395 (641)
T KOG0772|consen  386 ----DTLKVWDLRQ  395 (641)
T ss_pred             ----Cceeeeeccc
Confidence                4677777654

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.88  E-value=2.7e-21  Score=150.49  Aligned_cols=201  Identities=21%  Similarity=0.341  Sum_probs=152.7

Q ss_pred             eCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCe------------eeeeeee-cC---ceEEEEEcC-CCCEEEE
Q 022716           63 RGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGK------------CSQQAEL-SG---ENINITYKP-DGTHIAV  125 (293)
Q Consensus        63 ~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~------------~~~~~~~-~~---~~~~~~~~~-~~~~l~~  125 (293)
                      ..|.+.|+++...+..+.+++||+.||.|.+||+++..            |.-..++ .+   .+..+.|-| |.-.+.+
T Consensus        40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts  119 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS  119 (397)
T ss_pred             ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence            35888999999988888999999999999999997653            1100011 11   233566777 4445677


Q ss_pred             EeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCC---CCEEEEecCCCcEEEEeCCCC
Q 022716          126 GNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPM---GRYFAVGSADSLVSLWDISEM  202 (293)
Q Consensus       126 ~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~gs~d~~i~iwd~~~~  202 (293)
                      ++-|.++++||.++.+..-..+++..                     +++-+++|.   ..++|+|..+-.|++.|++.+
T Consensus       120 sSFDhtlKVWDtnTlQ~a~~F~me~~---------------------VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SG  178 (397)
T KOG4283|consen  120 SSFDHTLKVWDTNTLQEAVDFKMEGK---------------------VYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASG  178 (397)
T ss_pred             ccccceEEEeecccceeeEEeecCce---------------------eehhhcChhhhcceEEEEecCCCcEEEEeccCC
Confidence            77899999999988665544444332                     344455554   347899999999999999999


Q ss_pred             EEEEEeeccCCCeeEEEEccCCCE-EEEecCCCcEEEEEcCCC-CEEEEE---------------ecCCCcceeEECCCC
Q 022716          203 LCVRTFTKLEWPVRTISFSHTGDY-IASASEDLFIDISNVHTG-RTVHQI---------------PCRAAMNSVEWNPKY  265 (293)
Q Consensus       203 ~~~~~~~~~~~~v~~l~~sp~~~~-l~s~s~d~~i~iw~~~~~-~~~~~~---------------~~~~~i~~~~~sp~~  265 (293)
                      ..-+++.+|...|.++.|+|...+ |++||.||.|++||++.- .....+               .+.+.++.++|+.++
T Consensus       179 s~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~  258 (397)
T KOG4283|consen  179 SFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDA  258 (397)
T ss_pred             cceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccc
Confidence            999999999999999999999987 599999999999999753 122111               233568899999999


Q ss_pred             CeEEEEEcCCCCCCCCcceEEEEeeec
Q 022716          266 NLLAYAGDDKNKYQADEGVFRIYGFEN  292 (293)
Q Consensus       266 ~~la~~~~d~~~~~~~~~~~~~~~~~~  292 (293)
                      .++++.+.|        ..+|+||+|+
T Consensus       259 ~~l~~~gtd--------~r~r~wn~~~  277 (397)
T KOG4283|consen  259 RYLASCGTD--------DRIRVWNMES  277 (397)
T ss_pred             hhhhhccCc--------cceEEeeccc
Confidence            999999987        4688888876

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.88  E-value=2.5e-21  Score=166.40  Aligned_cols=246  Identities=18%  Similarity=0.247  Sum_probs=190.0

Q ss_pred             ecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCC--CCCEEEEEeCCCeEEE
Q 022716           16 YTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK--HADLIATASGDKTVRL   93 (293)
Q Consensus        16 ~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~--~~~~l~s~~~d~~i~v   93 (293)
                      ..+-...+.+++.||+|+.||+|..-|.+|+|++.+-.    ......+|...|.++.|+..  ...+|++++.|..|+|
T Consensus       455 ~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~----~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV  530 (1080)
T KOG1408|consen  455 TCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELE----YTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHV  530 (1080)
T ss_pred             hcCcccceEEEEECCCcceecccCccCceEEEEehhhh----hhhheecccceeEEEeecCchhhhHhhhhccCCceEEE
Confidence            34556789999999999999999999999999996422    22346789999999999643  2468999999999999


Q ss_pred             EeCCCC-eeeeeee-ecCceEEEEEcCCC--CEEEEEeCCCeEEEEEccccce-eeeecccceeeeeEEecCCCEEEEec
Q 022716           94 WDARSG-KCSQQAE-LSGENINITYKPDG--THIAVGNRDDELTILDVRKFKP-IHRRKFGYEVNEIAWNMTGEMFFLTT  168 (293)
Q Consensus        94 wd~~~~-~~~~~~~-~~~~~~~~~~~~~~--~~l~~~~~d~~i~l~d~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~  168 (293)
                      +|+... ..++.+. +...++++.|.-.|  ..+++++.|..+. ++...+.. ...  +          +.+   .-+.
T Consensus       531 ~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksim-Fr~~qk~~~g~~--f----------~r~---t~t~  594 (1080)
T KOG1408|consen  531 YDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIM-FRVNQKASSGRL--F----------PRH---TQTL  594 (1080)
T ss_pred             EecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhh-eehhccccCcee--c----------ccc---cccc
Confidence            998543 3444443 35567788887766  6788888887653 33322110 000  0          000   0112


Q ss_pred             CCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeec---cCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCC
Q 022716          169 GNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK---LEWPVRTISFSHTGDYIASASEDLFIDISNVHTGR  245 (293)
Q Consensus       169 ~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~---~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~  245 (293)
                      ....++.+++.|..++++++..|..|+|||+++++..+.|++   |++..-.+...|.|.|||+...|.++.++|+-+|+
T Consensus       595 ~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgE  674 (1080)
T KOG1408|consen  595 SKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGE  674 (1080)
T ss_pred             ccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccch
Confidence            234578899999999999999999999999999999999876   55677788899999999999999999999999999


Q ss_pred             EEEEEe-cCCCcceeEECCCCCeEEEEEcCCCCCCCC
Q 022716          246 TVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNKYQAD  281 (293)
Q Consensus       246 ~~~~~~-~~~~i~~~~~sp~~~~la~~~~d~~~~~~~  281 (293)
                      .+-++. +..-|+.+.|.||.++|++.+.|+=|++|.
T Consensus       675 cvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~  711 (1080)
T KOG1408|consen  675 CVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWK  711 (1080)
T ss_pred             hhhhhcCcchheeeeeecccchhheeecCCceEEEEE
Confidence            987765 445689999999999999999998666554

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=5.6e-20  Score=161.96  Aligned_cols=237  Identities=20%  Similarity=0.241  Sum_probs=180.0

Q ss_pred             ccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCC
Q 022716           19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS   98 (293)
Q Consensus        19 h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~   98 (293)
                      |...|.+++-  .++.|++|+.+++|.+|.+.+......    +..-.-++..++++.. +..++.||.|-.|++-+...
T Consensus        55 ~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~~~~i----L~Rftlp~r~~~v~g~-g~~iaagsdD~~vK~~~~~D  127 (933)
T KOG1274|consen   55 SGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGEEDTI----LARFTLPIRDLAVSGS-GKMIAAGSDDTAVKLLNLDD  127 (933)
T ss_pred             cCceeEEEee--cccceEEeeccceEEEeeCCCCCccce----eeeeeccceEEEEecC-CcEEEeecCceeEEEEeccc
Confidence            6678888874  566999999999999999876543322    2223457888999875 56899999999999999987


Q ss_pred             Ceeeeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEE
Q 022716           99 GKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIA  177 (293)
Q Consensus        99 ~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  177 (293)
                      ......+. +.+++.++.|.|++..|++.+.||.+++||+.++...+....-...+..            .....+..++
T Consensus       128 ~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~------------~~s~i~~~~a  195 (933)
T KOG1274|consen  128 SSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEF------------ILSRICTRLA  195 (933)
T ss_pred             cchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccc------------cccceeeeee
Confidence            76655544 6678889999999999999999999999999876654432210000000            0023456789


Q ss_pred             ECCCCCEEEEecCCCcEEEEeCCCCEEEEEeec--cCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEecCCC
Q 022716          178 IDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK--LEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAA  255 (293)
Q Consensus       178 ~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~--~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~  255 (293)
                      |+|++..++....|+.|.+|+...++....+..  +...+..+.|+|+|+|||+++.||.|.|||+++-.. +  .....
T Consensus       196 W~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~-~--~~~~~  272 (933)
T KOG1274|consen  196 WHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER-H--EFKRA  272 (933)
T ss_pred             ecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh-c--cccce
Confidence            999999999999999999999999987776654  334589999999999999999999999999987221 1  22456


Q ss_pred             cceeEECCCCCeEEEEEcCCCC
Q 022716          256 MNSVEWNPKYNLLAYAGDDKNK  277 (293)
Q Consensus       256 i~~~~~sp~~~~la~~~~d~~~  277 (293)
                      |.+++|.|+.+-|-.-...++.
T Consensus       273 Vc~~aw~p~~n~it~~~~~g~~  294 (933)
T KOG1274|consen  273 VCCEAWKPNANAITLITALGTL  294 (933)
T ss_pred             eEEEecCCCCCeeEEEeecccc
Confidence            8999999999877665554433

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.88  E-value=3.1e-19  Score=155.88  Aligned_cols=270  Identities=12%  Similarity=0.173  Sum_probs=198.9

Q ss_pred             cceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (293)
Q Consensus        12 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i   91 (293)
                      ...+|.++.+.|+++.=+|.=+.+|.|..+|+|.++++....  .  ...++...+.|++++|-.++.-++++|...|.+
T Consensus       194 ~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dk--i--l~sFk~d~g~VtslSFrtDG~p~las~~~~G~m  269 (910)
T KOG1539|consen  194 VVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDK--I--LMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDM  269 (910)
T ss_pred             EEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCc--E--EEEEEccccceeEEEeccCCCeeEEeccCCceE
Confidence            456788999999999999999999999999999999997531  2  223433358999999988888889999999999


Q ss_pred             EEEeCCCCeeeeeee--ecCceEEEEEcCCCCEEEEEeCCCeEEEEEcc--ccceeeee---cccce-------------
Q 022716           92 RLWDARSGKCSQQAE--LSGENINITYKPDGTHIAVGNRDDELTILDVR--KFKPIHRR---KFGYE-------------  151 (293)
Q Consensus        92 ~vwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~--~~~~~~~~---~~~~~-------------  151 (293)
                      .+||++..+......  +.+.+....|.|....+++.+.|+.+++|-..  ...|...+   .+..+             
T Consensus       270 ~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~  349 (910)
T KOG1539|consen  270 AFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHF  349 (910)
T ss_pred             EEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEE
Confidence            999998877655543  33667778888888889999999988877322  11110000   00000             


Q ss_pred             ------------------------------------------------------------------------eeeeEEec
Q 022716          152 ------------------------------------------------------------------------VNEIAWNM  159 (293)
Q Consensus       152 ------------------------------------------------------------------------~~~v~~~~  159 (293)
                                                                                              ...-.|+.
T Consensus       350 ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~  429 (910)
T KOG1539|consen  350 ILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNF  429 (910)
T ss_pred             EEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEec
Confidence                                                                                    00001221


Q ss_pred             CC----CEEEEec----CCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEe---eccCCCeeEEEEccCCCEEE
Q 022716          160 TG----EMFFLTT----GNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF---TKLEWPVRTISFSHTGDYIA  228 (293)
Q Consensus       160 ~~----~~~~~~~----~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~---~~~~~~v~~l~~sp~~~~l~  228 (293)
                      ..    +..+-..    .+..+.+++++++|++.+.|++.|.|-+|+++++....++   ..|..+|+.++...-++.++
T Consensus       430 ~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~v  509 (910)
T KOG1539|consen  430 RNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLV  509 (910)
T ss_pred             cCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEE
Confidence            11    1111111    1245789999999999999999999999999999888888   47899999999988889999


Q ss_pred             EecCCCcEEEEEcCCCCEEEEE------------------------------------------ecCCCcceeEECCCCC
Q 022716          229 SASEDLFIDISNVHTGRTVHQI------------------------------------------PCRAAMNSVEWNPKYN  266 (293)
Q Consensus       229 s~s~d~~i~iw~~~~~~~~~~~------------------------------------------~~~~~i~~~~~sp~~~  266 (293)
                      +++.||.+++||..+...+..+                                          .+...|+++.|||||.
T Consensus       510 sa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~Dgr  589 (910)
T KOG1539|consen  510 SAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGR  589 (910)
T ss_pred             EccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCc
Confidence            9999999999998765422111                                          1335788999999999


Q ss_pred             eEEEEEcCCCCCCCCcceE
Q 022716          267 LLAYAGDDKNKYQADEGVF  285 (293)
Q Consensus       267 ~la~~~~d~~~~~~~~~~~  285 (293)
                      .|++++.|+.+++||--+.
T Consensus       590 WlisasmD~tIr~wDlpt~  608 (910)
T KOG1539|consen  590 WLISASMDSTIRTWDLPTG  608 (910)
T ss_pred             EEEEeecCCcEEEEeccCc
Confidence            9999999977776665443

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.87  E-value=6.9e-21  Score=144.46  Aligned_cols=214  Identities=24%  Similarity=0.281  Sum_probs=153.8

Q ss_pred             ccceeecCccccEEEEEECC--CCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCC-CEEEEEeC
Q 022716           11 LHSREYTGHKKKVHSVAWNC--TGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHA-DLIATASG   87 (293)
Q Consensus        11 ~~~~~~~~h~~~v~~l~~s~--~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~-~~l~s~~~   87 (293)
                      .+..++.||.++|..++|-+  .|..||+++.||+|.||.-+.....+  ......|...|++++|-|.+. -.|++++.
T Consensus        47 ~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k--~~e~~~h~~SVNsV~wapheygl~LacasS  124 (299)
T KOG1332|consen   47 KLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTK--AYEHAAHSASVNSVAWAPHEYGLLLACASS  124 (299)
T ss_pred             eeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhh--hhhhhhhcccceeecccccccceEEEEeeC
Confidence            35678999999999999986  89999999999999999866443222  234568999999999988654 46888999


Q ss_pred             CCeEEEEeCCCC-ee-ee-ee-eecCceEEEEEcCC---C-----------CEEEEEeCCCeEEEEEccccceeeee---
Q 022716           88 DKTVRLWDARSG-KC-SQ-QA-ELSGENINITYKPD---G-----------THIAVGNRDDELTILDVRKFKPIHRR---  146 (293)
Q Consensus        88 d~~i~vwd~~~~-~~-~~-~~-~~~~~~~~~~~~~~---~-----------~~l~~~~~d~~i~l~d~~~~~~~~~~---  146 (293)
                      ||.|.|.+.+.. .- .. .. -+.-.+.++.|.|.   |           +.|++|+.|+.+++|+..+..-....   
T Consensus       125 DG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~  204 (299)
T KOG1332|consen  125 DGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLE  204 (299)
T ss_pred             CCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhh
Confidence            999999988665 11 11 11 12334556777765   4           56999999999999998775322111   


Q ss_pred             cccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCC-E--EEEEeeccCCCeeEEEEccC
Q 022716          147 KFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM-L--CVRTFTKLEWPVRTISFSHT  223 (293)
Q Consensus       147 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~-~--~~~~~~~~~~~v~~l~~sp~  223 (293)
                      .+..=+++++|.|.-.                 -...++|+++.||++.||..+.- +  ....++....++..++||+.
T Consensus       205 ~H~dwVRDVAwaP~~g-----------------l~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~s  267 (299)
T KOG1332|consen  205 GHKDWVRDVAWAPSVG-----------------LPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLS  267 (299)
T ss_pred             hcchhhhhhhhccccC-----------------CCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEecc
Confidence            1122245555543311                 12357999999999999976421 1  12233445678999999999


Q ss_pred             CCEEEEecCCCcEEEEEcCC
Q 022716          224 GDYIASASEDLFIDISNVHT  243 (293)
Q Consensus       224 ~~~l~s~s~d~~i~iw~~~~  243 (293)
                      |..|+.++.|+.+++|.-..
T Consensus       268 Gn~LaVs~GdNkvtlwke~~  287 (299)
T KOG1332|consen  268 GNILAVSGGDNKVTLWKENV  287 (299)
T ss_pred             ccEEEEecCCcEEEEEEeCC
Confidence            99999999999999997654

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.87  E-value=1.1e-20  Score=151.48  Aligned_cols=209  Identities=23%  Similarity=0.371  Sum_probs=157.7

Q ss_pred             ccceeecCccccEEEEEECCCC-CeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCC
Q 022716           11 LHSREYTGHKKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDK   89 (293)
Q Consensus        11 ~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~   89 (293)
                      .++..+.+|+..-..|.|||-- ..|+||..-+.|++|...+.. -..-...+.+|+..|-.+.|+|....+|+|||.|+
T Consensus       202 ~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~-W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~Dg  280 (440)
T KOG0302|consen  202 RPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGS-WKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDG  280 (440)
T ss_pred             CceEEecccCccceeeecccccccccccCccccceEeeeeccCc-eeecCccccccccchhhhccCCccCceEEeeecCc
Confidence            4566788999999999999943 358899999999999886532 22233457789999999999999888999999999


Q ss_pred             eEEEEeCCCCe---eeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEE
Q 022716           90 TVRLWDARSGK---CSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFL  166 (293)
Q Consensus        90 ~i~vwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  166 (293)
                      .|+|||++.+.   ++..-.+.+.+..+.|+..-.+|++|+.||++++||+|+.+.-      .+|-           .+
T Consensus       281 sIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~------~pVA-----------~f  343 (440)
T KOG0302|consen  281 SIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSG------QPVA-----------TF  343 (440)
T ss_pred             eEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCC------Ccce-----------eE
Confidence            99999999883   4444345566777889877778999999999999999986532      2222           23


Q ss_pred             ecCCCCEEEEEECCC-CCEEEEecCCCcEEEEeCCCC--------E--------EEEEeeccC--CCeeEEEEccCC-CE
Q 022716          167 TTGNAGCYCIAIDPM-GRYFAVGSADSLVSLWDISEM--------L--------CVRTFTKLE--WPVRTISFSHTG-DY  226 (293)
Q Consensus       167 ~~~~~~~~~~~~~~~-~~~l~~gs~d~~i~iwd~~~~--------~--------~~~~~~~~~--~~v~~l~~sp~~-~~  226 (293)
                      ..|..+|++|.|+|. ...+++++.|+.|.|||+.--        +        +.+.+.-|.  ..+..+.|+++- .+
T Consensus       344 k~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~  423 (440)
T KOG0302|consen  344 KYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGL  423 (440)
T ss_pred             EeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCe
Confidence            346788999999986 467888999999999997410        0        111222342  357788898874 47


Q ss_pred             EEEecCCCcEE
Q 022716          227 IASASEDLFID  237 (293)
Q Consensus       227 l~s~s~d~~i~  237 (293)
                      |++-+.||.-.
T Consensus       424 lvsTa~dGfnV  434 (440)
T KOG0302|consen  424 LVSTAIDGFNV  434 (440)
T ss_pred             EEEecccceeE
Confidence            88888888643

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.87  E-value=4.2e-19  Score=147.28  Aligned_cols=251  Identities=15%  Similarity=0.221  Sum_probs=181.0

Q ss_pred             cccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCC-cCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCC
Q 022716           20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGH-ADSVDQLCWDPKHADLIATASGDKTVRLWDARS   98 (293)
Q Consensus        20 ~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h-~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~   98 (293)
                      +..|....|.|.+..|+.....|.+..|+.+.....+... .+.++ +..|.+++|.+++ + ++||..+|.|.||+...
T Consensus       200 ne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~-~fek~ekk~Vl~v~F~eng-d-viTgDS~G~i~Iw~~~~  276 (626)
T KOG2106|consen  200 NEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQG-IFEKREKKFVLCVTFLENG-D-VITGDSGGNILIWSKGT  276 (626)
T ss_pred             cceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEee-ccccccceEEEEEEEcCCC-C-EEeecCCceEEEEeCCC
Confidence            4567889999988766655567999999887543222221 23333 3569999998764 3 67999999999999977


Q ss_pred             Ceeeeee-eecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccc---eeeeeEEecCC-------------
Q 022716           99 GKCSQQA-ELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGY---EVNEIAWNMTG-------------  161 (293)
Q Consensus        99 ~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~---~~~~v~~~~~~-------------  161 (293)
                      .+..+.. .+.+.+.++..-.+|+.|- |+.|..|..|| .+.+..+..+.+.   .++.+.=...+             
T Consensus       277 ~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~G  354 (626)
T KOG2106|consen  277 NRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQG  354 (626)
T ss_pred             ceEEeEeeecCCceEEEEEecCccEee-cCccceEEecc-ccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEe
Confidence            7655543 3566777888888887665 99999999999 4444444443321   12222211111             


Q ss_pred             -----CEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcE
Q 022716          162 -----EMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFI  236 (293)
Q Consensus       162 -----~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i  236 (293)
                           -......+.....-++.+|+...+++++.|+.+++|+ +. +..- -+....+..++.|+|.| .+|.|...|.-
T Consensus       355 t~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~-~~-k~~w-t~~~~d~~~~~~fhpsg-~va~Gt~~G~w  430 (626)
T KOG2106|consen  355 TLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN-DH-KLEW-TKIIEDPAECADFHPSG-VVAVGTATGRW  430 (626)
T ss_pred             eecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc-CC-ceeE-EEEecCceeEeeccCcc-eEEEeeccceE
Confidence                 0111122233566789999999999999999999999 22 2221 23456789999999999 99999999999


Q ss_pred             EEEEcCCCCEEEEEecCCCcceeEECCCCCeEEEEEcCCCCCC
Q 022716          237 DISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQ  279 (293)
Q Consensus       237 ~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~d~~~~~  279 (293)
                      .+.|.++...+..-....+++.++|+|+|++||.|+.|..+|+
T Consensus       431 ~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyi  473 (626)
T KOG2106|consen  431 FVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYI  473 (626)
T ss_pred             EEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEE
Confidence            9999999776655555778999999999999999999988876

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.86  E-value=3.9e-20  Score=149.14  Aligned_cols=232  Identities=19%  Similarity=0.332  Sum_probs=171.1

Q ss_pred             eeecCccccEEEEEECCC-CCeEEEEeCCCcEEEeecCCCCCCc---eeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCC
Q 022716           14 REYTGHKKKVHSVAWNCT-GTKLASGSVDQTARVWHIEPHGHGK---VKDIELRGHADSVDQLCWDPKHADLIATASGDK   89 (293)
Q Consensus        14 ~~~~~h~~~v~~l~~s~~-~~~l~s~~~dg~v~iw~~~~~~~~~---~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~   89 (293)
                      ..+.||+++|..++|+|- ++.|||||.|-+|+||++-.+....   .....|.+|...|.-+.|+|.-.+.|+|++.|.
T Consensus        75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn  154 (472)
T KOG0303|consen   75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN  154 (472)
T ss_pred             CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence            346799999999999985 4678999999999999986543221   123568899999999999999888999999999


Q ss_pred             eEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecC
Q 022716           90 TVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG  169 (293)
Q Consensus        90 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  169 (293)
                      +|.+||+.+++.+..+.+...+.++.|+.||.++++.+.|..|++||.+..+.+.+.......                 
T Consensus       155 ~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~-----------------  217 (472)
T KOG0303|consen  155 TVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGA-----------------  217 (472)
T ss_pred             eEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCC-----------------
Confidence            999999999998887778888999999999999999999999999999998877654211110                 


Q ss_pred             CCCEEEEEECCCCCEEEEec---CCCcEEEEeCCCCEEEEEeeccC--CCeeEEEEccCCCEEEEe-cCCCcEEEEEcCC
Q 022716          170 NAGCYCIAIDPMGRYFAVGS---ADSLVSLWDISEMLCVRTFTKLE--WPVRTISFSHTGDYIASA-SEDLFIDISNVHT  243 (293)
Q Consensus       170 ~~~~~~~~~~~~~~~l~~gs---~d~~i~iwd~~~~~~~~~~~~~~--~~v~~l~~sp~~~~l~s~-s~d~~i~iw~~~~  243 (293)
                        ...-+.|-.++.++.+|-   ++..+-|||..+.+..-.+...+  +.|.-=-|.|+...+..+ -.|+.|+.|.+..
T Consensus       218 --k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~  295 (472)
T KOG0303|consen  218 --KPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITN  295 (472)
T ss_pred             --CcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecC
Confidence              011122334555555553   47789999987654443333322  234433467888887555 4899999999866


Q ss_pred             CCE-E---EEEecCCCcceeEECCC
Q 022716          244 GRT-V---HQIPCRAAMNSVEWNPK  264 (293)
Q Consensus       244 ~~~-~---~~~~~~~~i~~~~~sp~  264 (293)
                      ... +   ..+....+-+.+.|-|+
T Consensus       296 d~P~~hyln~f~S~epQRG~g~mPK  320 (472)
T KOG0303|consen  296 EPPFVHYLNTFSSKEPQRGMGFMPK  320 (472)
T ss_pred             CCceeEEecccccCCcccccccccc
Confidence            442 2   23445566777777774

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=2.3e-19  Score=153.45  Aligned_cols=245  Identities=17%  Similarity=0.266  Sum_probs=185.9

Q ss_pred             eeecCcc-ccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEE
Q 022716           14 REYTGHK-KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (293)
Q Consensus        14 ~~~~~h~-~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~   92 (293)
                      ..+.|+. ..|.+|+|. ++.+|.+.+-+|.|.-||+...    ..........+.|++++.+|.+ ..++-|+.||.+.
T Consensus        62 ~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~l----k~~~~~d~~gg~IWsiai~p~~-~~l~IgcddGvl~  135 (691)
T KOG2048|consen   62 PVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTL----KQKYNIDSNGGAIWSIAINPEN-TILAIGCDDGVLY  135 (691)
T ss_pred             EEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccC----ceeEEecCCCcceeEEEeCCcc-ceEEeecCCceEE
Confidence            4455665 689999999 5668889999999999999742    1223344556789999999975 5677788999777


Q ss_pred             EEeCCCCeeeeeee---ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeec-----ccceeeeeEEecCCCEE
Q 022716           93 LWDARSGKCSQQAE---LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-----FGYEVNEIAWNMTGEMF  164 (293)
Q Consensus        93 vwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~  164 (293)
                      ..+...+.......   ..+.+.++.|+|++..++.|+.||.|++||......++...     .+..-..++|       
T Consensus       136 ~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVW-------  208 (691)
T KOG2048|consen  136 DFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVW-------  208 (691)
T ss_pred             EEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEE-------
Confidence            77777776544322   34778899999999999999999999999998877665221     1111223334       


Q ss_pred             EEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCC
Q 022716          165 FLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTG  244 (293)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~  244 (293)
                                ++.+-. ...+++|++.|+|.+||...+..++++.-|...|.+++.++++.++++++.|+.|.-+...+.
T Consensus       209 ----------Sv~~Lr-d~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~  277 (691)
T KOG2048|consen  209 ----------SVLFLR-DSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTN  277 (691)
T ss_pred             ----------EEEEee-cCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCC
Confidence                      455543 446899999999999999999999999999999999999999999999999999988887665


Q ss_pred             CE--EE---EEecCCCcceeEECCCCCeEEEEEcCCCCCCCCcce
Q 022716          245 RT--VH---QIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGV  284 (293)
Q Consensus       245 ~~--~~---~~~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~  284 (293)
                      +.  +.   ...+...+++++..++  .+.+||.|..+++-...-
T Consensus       278 ~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~  320 (691)
T KOG2048|consen  278 KSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSRE  320 (691)
T ss_pred             ccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccccc
Confidence            33  11   1223446888888776  889999998777654443

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.86  E-value=1.9e-20  Score=152.80  Aligned_cols=207  Identities=20%  Similarity=0.368  Sum_probs=157.8

Q ss_pred             cCccccEEEEEECCCC-CeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEe
Q 022716           17 TGHKKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWD   95 (293)
Q Consensus        17 ~~h~~~v~~l~~s~~~-~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd   95 (293)
                      .+|+..|.+|+|+..- +.|||||.|.+|++||++...    ....+..|.+.|.++.|+|..+..|++|+.|++|.+.|
T Consensus       240 ~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~----p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D  315 (463)
T KOG0270|consen  240 SGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGK----PKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKD  315 (463)
T ss_pred             ccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCC----cceehhhcCCceeEEEecCCCceEEEeccccceEEeee
Confidence            4799999999999765 578999999999999998532    22345678999999999999889999999999999999


Q ss_pred             CCCC-eeeeeeeecCceEEEEEcCCCC-EEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCE
Q 022716           96 ARSG-KCSQQAELSGENINITYKPDGT-HIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGC  173 (293)
Q Consensus        96 ~~~~-~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  173 (293)
                      .+.. .....+.+.+.+-.++|.|... .+++++.||+++-+|+|+..                   ...+.+..|+++|
T Consensus       316 ~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~-------------------~~vwt~~AHd~~I  376 (463)
T KOG0270|consen  316 CRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPG-------------------KPVWTLKAHDDEI  376 (463)
T ss_pred             ccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCC-------------------CceeEEEeccCCc
Confidence            9843 3344567788888999988654 67777789999999999752                   1223345677888


Q ss_pred             EEEEECCCC-CEEEEecCCCcEEEEeCCCCEEEEEeeccC---CCeeEEEEccCCC-EEEEecCCCcEEEEEcCCCCEE
Q 022716          174 YCIAIDPMG-RYFAVGSADSLVSLWDISEMLCVRTFTKLE---WPVRTISFSHTGD-YIASASEDLFIDISNVHTGRTV  247 (293)
Q Consensus       174 ~~~~~~~~~-~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~---~~v~~l~~sp~~~-~l~s~s~d~~i~iw~~~~~~~~  247 (293)
                      .+|++++.- .++++++.|+.+++|++..-.. +....|.   ....+.++.|+-. ++|.|+..+.+++||+.+...+
T Consensus       377 Sgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~-~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V  454 (463)
T KOG0270|consen  377 SGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP-KSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV  454 (463)
T ss_pred             ceEEecCCCCcceeeccccceEEEEeecCCCC-cccccccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence            899988764 6789999999999999854321 1112222   2345556666644 5788888899999999876543

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.85  E-value=5.6e-20  Score=145.01  Aligned_cols=253  Identities=16%  Similarity=0.289  Sum_probs=178.5

Q ss_pred             CccccEEEEEECCC----CCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEE
Q 022716           18 GHKKKVHSVAWNCT----GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL   93 (293)
Q Consensus        18 ~h~~~v~~l~~s~~----~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~v   93 (293)
                      .|......++|+.+    ..+||.||.-|.|||.|+....    ....+.+|-..|+.+.++|...++++|+|.|..||+
T Consensus        87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~----~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRl  162 (385)
T KOG1034|consen   87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQ----CSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRL  162 (385)
T ss_pred             CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhh----hccceeccCccchhhhcCCCCCcEEEEecCCceEEE
Confidence            35667788888764    3478999999999999987532    223578999999999999998999999999999999


Q ss_pred             EeCCCCeeeeeee----ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEE---
Q 022716           94 WDARSGKCSQQAE----LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFL---  166 (293)
Q Consensus        94 wd~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---  166 (293)
                      |++++..|+..+.    +..++.++.|+++|.++++++-|..+++|++...+-....+.     .+.|++.+...-+   
T Consensus       163 wnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~-----s~~~~~~~t~~pfpt~  237 (385)
T KOG1034|consen  163 WNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLEL-----SITYSPNKTTRPFPTP  237 (385)
T ss_pred             EeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhh-----hcccCCCCccCcCCcc
Confidence            9999999987653    456788999999999999999999999999985432211111     0223332221000   


Q ss_pred             ----------ecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCC-CEE-------------EEEeeccCCCeeEEEE--
Q 022716          167 ----------TTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISE-MLC-------------VRTFTKLEWPVRTISF--  220 (293)
Q Consensus       167 ----------~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~-~~~-------------~~~~~~~~~~v~~l~~--  220 (293)
                                .-|...+-|+.|  -|.++++=+-++.|..|..-+ .+.             +..+.-....+.-+.|  
T Consensus       238 ~~~fp~fst~diHrnyVDCvrw--~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~  315 (385)
T KOG1034|consen  238 KTHFPDFSTTDIHRNYVDCVRW--FGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAF  315 (385)
T ss_pred             ccccccccccccccchHHHHHH--HhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEee
Confidence                      011112222222  267889999999999998721 111             1112112223444544  


Q ss_pred             ccCCCEEEEecCCCcEEEEEcCCCCEE--EEE---ecCCCcceeEECCCCCeEEEEEcCCCCCCCC
Q 022716          221 SHTGDYIASASEDLFIDISNVHTGRTV--HQI---PCRAAMNSVEWNPKYNLLAYAGDDKNKYQAD  281 (293)
Q Consensus       221 sp~~~~l~s~s~d~~i~iw~~~~~~~~--~~~---~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~  281 (293)
                      .|-++.||.|...|.+++||+......  .++   .....|+..+||.++..|+...+|+.+|-||
T Consensus       316 d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd  381 (385)
T KOG1034|consen  316 DPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWD  381 (385)
T ss_pred             cHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence            566899999999999999999865432  222   2345689999999999999999998777554

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=5.7e-19  Score=142.57  Aligned_cols=274  Identities=16%  Similarity=0.215  Sum_probs=191.1

Q ss_pred             ccceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCC---CCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeC
Q 022716           11 LHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHG---HGKVKDIELRGHADSVDQLCWDPKHADLIATASG   87 (293)
Q Consensus        11 ~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~---~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~   87 (293)
                      .+.+.+.+|.+-|.++.||.++++||+|+.|-.+++|.++.--   .+....+.-..|...|.++.|+.. ..++++|+.
T Consensus        47 ~~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~-N~~~~SG~~  125 (609)
T KOG4227|consen   47 FCQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLE-NRFLYSGER  125 (609)
T ss_pred             hhhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccC-CeeEecCCC
Confidence            4455667999999999999999999999999999999986321   112222233346678999999865 568999999


Q ss_pred             CCeEEEEeCCCCeeeeeeeec---CceEEEEEcCCCCEEEEEeCCCeEEEEEccccc-e---eeeecccceeeeeEEecC
Q 022716           88 DKTVRLWDARSGKCSQQAELS---GENINITYKPDGTHIAVGNRDDELTILDVRKFK-P---IHRRKFGYEVNEIAWNMT  160 (293)
Q Consensus        88 d~~i~vwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~-~---~~~~~~~~~~~~v~~~~~  160 (293)
                      +++|.+-|+.+.+.+..+...   +.++.+..+|-.+.+++.+.++.+.+||.+... +   ......+.....+.|+|.
T Consensus       126 ~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~  205 (609)
T KOG4227|consen  126 WGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPE  205 (609)
T ss_pred             cceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCC
Confidence            999999999998877766544   478889999999999999999999999998644 2   222223444555666666


Q ss_pred             CCEEEEecCCC-----------------------------CEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeecc
Q 022716          161 GEMFFLTTGNA-----------------------------GCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL  211 (293)
Q Consensus       161 ~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~  211 (293)
                      .+.+++.....                             ....+-|+|.|+.+++--....-.+||+-..++.---..|
T Consensus       206 ~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~  285 (609)
T KOG4227|consen  206 TPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDH  285 (609)
T ss_pred             CceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccC
Confidence            55444433210                             0123567777777776655556667776654332211111


Q ss_pred             C-------CCeeEEEEccCCCEEEEecCCCcEEEEEcCC-----C-----C---------E----EEEE-ecCCCcceeE
Q 022716          212 E-------WPVRTISFSHTGDYIASASEDLFIDISNVHT-----G-----R---------T----VHQI-PCRAAMNSVE  260 (293)
Q Consensus       212 ~-------~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~-----~-----~---------~----~~~~-~~~~~i~~~~  260 (293)
                      .       ..+.+++|.-+.. +++||.+--|++|.+..     |     +         .    +..+ .+++-++.|.
T Consensus       286 N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVR  364 (609)
T KOG4227|consen  286 NPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVR  364 (609)
T ss_pred             CCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEeccccccccee
Confidence            1       2477788876654 99999999999998642     1     1         0    1122 2444568899


Q ss_pred             ECCCCCeEEEEEcCCCCCCCCcceEE
Q 022716          261 WNPKYNLLAYAGDDKNKYQADEGVFR  286 (293)
Q Consensus       261 ~sp~~~~la~~~~d~~~~~~~~~~~~  286 (293)
                      |+|..++|++.|-.+.+++|..+..-
T Consensus       365 F~~H~~~l~SSGVE~~~KlWS~~r~P  390 (609)
T KOG4227|consen  365 FSQHNNLLVSSGVENSFKLWSDHRLP  390 (609)
T ss_pred             ecCCcceEeccchhhheeccccccCC
Confidence            99999999999988877777765543

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=6e-19  Score=138.62  Aligned_cols=246  Identities=18%  Similarity=0.334  Sum_probs=175.1

Q ss_pred             cceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (293)
Q Consensus        12 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i   91 (293)
                      ..+.+.+|..+|++++||+||+.|+|+|.|..|++||+....  ....+.+   ..+|....|+|...+.++..-.+..-
T Consensus        57 iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs--~l~rirf---~spv~~~q~hp~k~n~~va~~~~~sp  131 (405)
T KOG1273|consen   57 IARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGS--PLKRIRF---DSPVWGAQWHPRKRNKCVATIMEESP  131 (405)
T ss_pred             hhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCC--ceeEEEc---cCccceeeeccccCCeEEEEEecCCc
Confidence            356789999999999999999999999999999999997542  3333333   57899999999877666555555555


Q ss_pred             EEEeCCCCeeeeeeee------cCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEE
Q 022716           92 RLWDARSGKCSQQAEL------SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFF  165 (293)
Q Consensus        92 ~vwd~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  165 (293)
                      .+-++..+.... +..      .....+..|.+.|+++++|...|.+.++|..+.+.+...+..                
T Consensus       132 ~vi~~s~~~h~~-Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rit----------------  194 (405)
T KOG1273|consen  132 VVIDFSDPKHSV-LPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRIT----------------  194 (405)
T ss_pred             EEEEecCCceee-ccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeec----------------
Confidence            555554322111 111      111123458899999999999999999999887655432211                


Q ss_pred             EecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCC-------EE--EEEeec--cCCCeeEEEEccCCCEEEEec-CC
Q 022716          166 LTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM-------LC--VRTFTK--LEWPVRTISFSHTGDYIASAS-ED  233 (293)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~-------~~--~~~~~~--~~~~v~~l~~sp~~~~l~s~s-~d  233 (293)
                        + ...+..+-++-.|++++.-+.|+.|+.|+++.-       +.  .+++..  ..-+...++|+.+|.|++.++ ..
T Consensus       195 --s-~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~a  271 (405)
T KOG1273|consen  195 --S-VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARA  271 (405)
T ss_pred             --h-heeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccc
Confidence              0 123556778889999999999999999997631       11  111111  233567899999999998877 44


Q ss_pred             CcEEEEEcCCCCEEEEEec-C-CCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeee
Q 022716          234 LFIDISNVHTGRTVHQIPC-R-AAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE  291 (293)
Q Consensus       234 ~~i~iw~~~~~~~~~~~~~-~-~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~  291 (293)
                      ..++||....|.+++.+.. + .....+.|+|--..+++-.         .|++.||..+
T Consensus       272 HaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si~---------sg~v~iw~~~  322 (405)
T KOG1273|consen  272 HALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASIA---------SGVVYIWAVV  322 (405)
T ss_pred             eeEEEEecCCcceeeeecCCchhheeecccccceeeeeecc---------CCceEEEEee
Confidence            5699999999999988754 2 3577899999877777762         3567777653

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.84  E-value=1.5e-18  Score=136.83  Aligned_cols=247  Identities=21%  Similarity=0.354  Sum_probs=170.9

Q ss_pred             cEEEEEECCCCCeEEEEeCCCcEEEeecCCCCC----Cc----eeEEEeeCCc-CCeeEEEEc-------CCCCCEEEEE
Q 022716           22 KVHSVAWNCTGTKLASGSVDQTARVWHIEPHGH----GK----VKDIELRGHA-DSVDQLCWD-------PKHADLIATA   85 (293)
Q Consensus        22 ~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~----~~----~~~~~~~~h~-~~i~~~~~~-------~~~~~~l~s~   85 (293)
                      -...+.|+|||..|++-+.|..+++|++....-    ..    .....++-.. ..|..-+|-       |+ ..++++.
T Consensus        51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~-t~l~a~s  129 (406)
T KOG2919|consen   51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPS-TNLFAVS  129 (406)
T ss_pred             hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCc-cceeeec
Confidence            456789999999999999999999998843210    00    0111111111 235555553       33 4688888


Q ss_pred             eCCCeEEEEeCCCCeeeeeeeecC------ceEEEEEcCCCCEEEEEeCCCeEEEEEc-cccceeeeecccceeeeeEEe
Q 022716           86 SGDKTVRLWDARSGKCSQQAELSG------ENINITYKPDGTHIAVGNRDDELTILDV-RKFKPIHRRKFGYEVNEIAWN  158 (293)
Q Consensus        86 ~~d~~i~vwd~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~~~d~~i~l~d~-~~~~~~~~~~~~~~~~~v~~~  158 (293)
                      +.|.-|++||.-+|+....+..-.      ...+++|+|||.+|++|. .+.|+++|+ |...-..       +......
T Consensus       130 sr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~-------vy~t~~~  201 (406)
T KOG2919|consen  130 SRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCP-------VYTTVTK  201 (406)
T ss_pred             cccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCc-------chhhhhc
Confidence            999999999999998665443221      245899999999999986 678999998 4332111       1000000


Q ss_pred             cCCCEEEEecCCCCEEEEEECCCCC-EEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEec-CCCcE
Q 022716          159 MTGEMFFLTTGNAGCYCIAIDPMGR-YFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASAS-EDLFI  236 (293)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s-~d~~i  236 (293)
                        ++    ....+-+.|++++|... .+++|+--..+-||.-..+.++..+-+|.+.|+.++|.++|+.|.+|+ .|-.|
T Consensus       202 --~k----~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkI  275 (406)
T KOG2919|consen  202 --GK----FGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKI  275 (406)
T ss_pred             --cc----ccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeE
Confidence              00    01123356899999875 899999999999999888888888889999999999999999999998 57889


Q ss_pred             EEEEcCCCC-EEEEEecCCC-cc-ee--EECCCCCeEEEEEcCCCCCCCCcceEEEEeee
Q 022716          237 DISNVHTGR-TVHQIPCRAA-MN-SV--EWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE  291 (293)
Q Consensus       237 ~iw~~~~~~-~~~~~~~~~~-i~-~~--~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~  291 (293)
                      -.||++..+ .+..+.-+.. .| .|  ...|++++||+|+.|+        .+++|++.
T Consensus       276 l~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG--------~V~vwdlk  327 (406)
T KOG2919|consen  276 LCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDG--------SVRVWDLK  327 (406)
T ss_pred             EEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCc--------cEEEEecC
Confidence            999998654 3333322111 11 23  4579999999999885        56666553

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.84  E-value=2.3e-19  Score=153.50  Aligned_cols=240  Identities=19%  Similarity=0.305  Sum_probs=173.3

Q ss_pred             ccccceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCC
Q 022716            9 KNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD   88 (293)
Q Consensus         9 ~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d   88 (293)
                      .+...+.++||++.|.|++|+.||+++|+|+.|+.|.+|+-.-.  +.   + --.|.+.|.++.|+|-. ..|+|++-.
T Consensus        42 dG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klE--G~---L-kYSH~D~IQCMsFNP~~-h~LasCsLs  114 (1081)
T KOG1538|consen   42 DGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLE--GI---L-KYSHNDAIQCMSFNPIT-HQLASCSLS  114 (1081)
T ss_pred             CcccccccccccceEEEEEEccCCceeccCCCceeEEEeccccc--ce---e-eeccCCeeeEeecCchH-HHhhhcchh
Confidence            34456789999999999999999999999999999999975321  11   1 23699999999999974 567777653


Q ss_pred             CeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEec
Q 022716           89 KTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTT  168 (293)
Q Consensus        89 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  168 (293)
                       ..-+|..... .+........+.+++|..||.+++.|..+|+|.+-+-..........                  ...
T Consensus       115 -dFglWS~~qK-~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~R------------------pgg  174 (1081)
T KOG1538|consen  115 -DFGLWSPEQK-SVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIER------------------PGG  174 (1081)
T ss_pred             -hccccChhhh-hHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeC------------------CCC
Confidence             2457865432 22223344567789999999999999999999876422111111101                  111


Q ss_pred             CCCCEEEEEECCC-----CCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCC
Q 022716          169 GNAGCYCIAIDPM-----GRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHT  243 (293)
Q Consensus       169 ~~~~~~~~~~~~~-----~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~  243 (293)
                      .+.++.+++++|.     ...+++.....++.+|.+. |..+..-+.......++++.|+|.++..|+.|+.+.++.- .
T Consensus       175 ~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR-~  252 (1081)
T KOG1538|consen  175 SNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTR-D  252 (1081)
T ss_pred             CCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEEccCCCceEEEee-c
Confidence            2345555666554     3467888888888888764 4445544566778899999999999999999999999965 4


Q ss_pred             CCEEEEEe-cCCCcceeEECCCCCeEEEEEcCCCC
Q 022716          244 GRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNK  277 (293)
Q Consensus       244 ~~~~~~~~-~~~~i~~~~~sp~~~~la~~~~d~~~  277 (293)
                      |-.+.++. ....|..+..+|+++..+.|..|+.+
T Consensus       253 GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTi  287 (1081)
T KOG1538|consen  253 GVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTI  287 (1081)
T ss_pred             CeEEeeccccceeEEEEEEccCCceEEEEEccCee
Confidence            44444443 45679999999999999999988643

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=6.3e-19  Score=138.71  Aligned_cols=213  Identities=18%  Similarity=0.272  Sum_probs=151.1

Q ss_pred             EeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCe-----eeeeeeecCceEEEEEcCCCCEEEEEe-CCCeEEE
Q 022716           61 ELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGK-----CSQQAELSGENINITYKPDGTHIAVGN-RDDELTI  134 (293)
Q Consensus        61 ~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~l  134 (293)
                      .+++|.+.|++++|+.+ +..|+|++.|+.|++|+++.-.     +++.----++++.++|.||-+.+++.. ..+++++
T Consensus        81 ~LKgH~~~vt~~~FsSd-GK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~v  159 (420)
T KOG2096|consen   81 VLKGHKKEVTDVAFSSD-GKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCV  159 (420)
T ss_pred             hhhccCCceeeeEEcCC-CceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEE
Confidence            47899999999999976 5789999999999999987542     222111124778899999988766554 5668888


Q ss_pred             EEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCC
Q 022716          135 LDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWP  214 (293)
Q Consensus       135 ~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~  214 (293)
                      |-+...+.-     +..-..+-|+   .+.+-.-+...+..+-+-..+.++++++.|..|.||+++ ++.+..+......
T Consensus       160 yk~~K~~dG-----~~~~~~v~~D---~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~  230 (420)
T KOG2096|consen  160 YKLVKKTDG-----SGSHHFVHID---NLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSS  230 (420)
T ss_pred             EEeeecccC-----CCCccccccc---ccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecccccc
Confidence            876543210     1111122222   111222234455666677788999999999999999998 7777777666666


Q ss_pred             eeEEEEccCCCEEEEecCCCcEEEEEcC---CCC--E-EEE--E-ecCCCcceeEECCCCCeEEEEEcCCCCCCCCcc
Q 022716          215 VRTISFSHTGDYIASASEDLFIDISNVH---TGR--T-VHQ--I-PCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEG  283 (293)
Q Consensus       215 v~~l~~sp~~~~l~s~s~d~~i~iw~~~---~~~--~-~~~--~-~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~  283 (293)
                      -...+.||+|+++++++=--.+++|.+-   +|.  . .+.  + .+...|.+++|||+..++++.|.|+.+++|+..
T Consensus       231 n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtd  308 (420)
T KOG2096|consen  231 NYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTD  308 (420)
T ss_pred             ccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeecc
Confidence            6778899999999999987889999763   231  1 222  2 345679999999999999999999766655543

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.83  E-value=3.6e-19  Score=150.46  Aligned_cols=218  Identities=20%  Similarity=0.322  Sum_probs=169.9

Q ss_pred             eEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCE--EEEEeCCCeEEEE
Q 022716           58 KDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTH--IAVGNRDDELTIL  135 (293)
Q Consensus        58 ~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~d~~i~l~  135 (293)
                      ....+.||++.|.+++..|. +..|++|+.||+|+||.+.+++|+..+.+.+.+.+++|.|.+..  |+++.. ..+.+.
T Consensus       392 ~~lvyrGHtg~Vr~iSvdp~-G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~-~~~~iv  469 (733)
T KOG0650|consen  392 CALVYRGHTGLVRSISVDPS-GEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVG-ECVLIV  469 (733)
T ss_pred             eeeeEeccCCeEEEEEecCC-cceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEec-CceEEe
Confidence            34567899999999999996 57999999999999999999999999999999999999997753  444333 334444


Q ss_pred             Ecccc---------ce-----------------------------eeeecccceeeeeEEecCCCEEEEecCC-------
Q 022716          136 DVRKF---------KP-----------------------------IHRRKFGYEVNEIAWNMTGEMFFLTTGN-------  170 (293)
Q Consensus       136 d~~~~---------~~-----------------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~-------  170 (293)
                      +..-+         .+                             .-.+++...++.+.|+-.|..+...+..       
T Consensus       470 np~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vl  549 (733)
T KOG0650|consen  470 NPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVL  549 (733)
T ss_pred             CccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEE
Confidence            32100         00                             0112344567888899888877655442       


Q ss_pred             -----------------CCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCC
Q 022716          171 -----------------AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASED  233 (293)
Q Consensus       171 -----------------~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d  233 (293)
                                       +.+.++.|+|...+|++++ ...|+|||+.+++.++++......|..++.+|.|..|+.|+.|
T Consensus       550 iHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d  628 (733)
T KOG0650|consen  550 IHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYD  628 (733)
T ss_pred             EEecccccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCC
Confidence                             3467889999999888887 4579999998887777777777789999999999999999999


Q ss_pred             CcEEEEEcCCCCEE-EEEe-cCCCcceeEECCCCCeEEEEEcCCCCC
Q 022716          234 LFIDISNVHTGRTV-HQIP-CRAAMNSVEWNPKYNLLAYAGDDKNKY  278 (293)
Q Consensus       234 ~~i~iw~~~~~~~~-~~~~-~~~~i~~~~~sp~~~~la~~~~d~~~~  278 (293)
                      +.+..+|+.-..+. +.+. +...+++|+||+..++||+|++|+.+.
T Consensus       629 ~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~  675 (733)
T KOG0650|consen  629 KKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVI  675 (733)
T ss_pred             CeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEE
Confidence            99999999876443 3343 455799999999999999999997655

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.83  E-value=1.3e-18  Score=135.40  Aligned_cols=240  Identities=18%  Similarity=0.264  Sum_probs=170.1

Q ss_pred             cCccccEEEEEECCCCC-----eEEEEeCCCcEEEeecCCCCCCceeEEEe-----eCCcCCeeEEEEcCCCCCEEEEEe
Q 022716           17 TGHKKKVHSVAWNCTGT-----KLASGSVDQTARVWHIEPHGHGKVKDIEL-----RGHADSVDQLCWDPKHADLIATAS   86 (293)
Q Consensus        17 ~~h~~~v~~l~~s~~~~-----~l~s~~~dg~v~iw~~~~~~~~~~~~~~~-----~~h~~~i~~~~~~~~~~~~l~s~~   86 (293)
                      ..|.-+++.+.|.|+..     .|||.+  ..+|+|.+............+     ..+.+++++..|+..+.+++.+++
T Consensus        93 fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS  170 (364)
T KOG0290|consen   93 FDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS  170 (364)
T ss_pred             CCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence            47888999999999873     455554  689999987432221111112     234578999999988889999999


Q ss_pred             CCCeEEEEeCCCCee----eeeeeecCceEEEEEcCCC-CEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCC
Q 022716           87 GDKTVRLWDARSGKC----SQQAELSGENINITYKPDG-THIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTG  161 (293)
Q Consensus        87 ~d~~i~vwd~~~~~~----~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~  161 (293)
                      -|-+..|||+.++..    .+.+.+..++..++|...+ ..+++.+.||.++++|+|...-..- .+..        |  
T Consensus       171 iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTI-IYE~--------p--  239 (364)
T KOG0290|consen  171 IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTI-IYED--------P--  239 (364)
T ss_pred             ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceE-EecC--------C--
Confidence            999999999988732    2234456778899998755 4678899999999999987542110 0000        0  


Q ss_pred             CEEEEecCCCCEEEEEECCCC-CEEEEecCC-CcEEEEeCCC-CEEEEEeeccCCCeeEEEEccC-CCEEEEecCCCcEE
Q 022716          162 EMFFLTTGNAGCYCIAIDPMG-RYFAVGSAD-SLVSLWDISE-MLCVRTFTKLEWPVRTISFSHT-GDYIASASEDLFID  237 (293)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~-~~l~~gs~d-~~i~iwd~~~-~~~~~~~~~~~~~v~~l~~sp~-~~~l~s~s~d~~i~  237 (293)
                            ....+..-+++++.. +++|+-..| ..|.|.|++. ...+..+.+|...|+.++|.|. ...++||++|..+-
T Consensus       240 ------~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qal  313 (364)
T KOG0290|consen  240 ------SPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQAL  313 (364)
T ss_pred             ------CCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEE
Confidence                  001233345555543 566666554 4589999974 5567788999999999999996 56899999999999


Q ss_pred             EEEcCCCC------EEEEEecCCCcceeEECC-CCCeEEEEEcCC
Q 022716          238 ISNVHTGR------TVHQIPCRAAMNSVEWNP-KYNLLAYAGDDK  275 (293)
Q Consensus       238 iw~~~~~~------~~~~~~~~~~i~~~~~sp-~~~~la~~~~d~  275 (293)
                      |||+..--      .+..+.....|+.|.|+| ....||.+...+
T Consensus       314 iWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~kk  358 (364)
T KOG0290|consen  314 IWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICFGKK  358 (364)
T ss_pred             EEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEecCe
Confidence            99997521      233445667899999997 457888887553

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.83  E-value=5e-19  Score=150.70  Aligned_cols=125  Identities=19%  Similarity=0.342  Sum_probs=94.2

Q ss_pred             eeecCccccEEEEEECCC-CCeEEEEeCCCcEEEeecCCCCCCce--eEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCe
Q 022716           14 REYTGHKKKVHSVAWNCT-GTKLASGSVDQTARVWHIEPHGHGKV--KDIELRGHADSVDQLCWDPKHADLIATASGDKT   90 (293)
Q Consensus        14 ~~~~~h~~~v~~l~~s~~-~~~l~s~~~dg~v~iw~~~~~~~~~~--~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~   90 (293)
                      ..+-+|...|+.+.|+|- +.+|||||.|-.||||.+........  ..+.+.+-+-.+-++.|+|....++++ +..|.
T Consensus        73 ~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s-~a~g~  151 (1012)
T KOG1445|consen   73 GILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILAS-GAHGS  151 (1012)
T ss_pred             ceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEe-ccCce
Confidence            346789999999999984 45689999999999999863222111  122333334457899999986666655 56789


Q ss_pred             EEEEeCCCCeeeeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccc
Q 022716           91 VRLWDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRK  139 (293)
Q Consensus        91 i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~  139 (293)
                      +.+||+.+++...... +...+.++.|+.||+.|++...|..|++||.|.
T Consensus       152 v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa  201 (1012)
T KOG1445|consen  152 VYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRA  201 (1012)
T ss_pred             EEEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCcc
Confidence            9999998887665544 334566889999999999999999999999764

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.82  E-value=4.9e-17  Score=130.37  Aligned_cols=238  Identities=18%  Similarity=0.284  Sum_probs=168.4

Q ss_pred             cccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCC--CeEEEEeCC
Q 022716           20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD--KTVRLWDAR   97 (293)
Q Consensus        20 ~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d--~~i~vwd~~   97 (293)
                      ...+....|+-+...|..|+.||. ++|+.++.+.    ..........|--+-|+   ..+++-.+.+  ..+++.+.+
T Consensus         5 ~~ti~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~~~k----~~~~~~~~~~IvEmLFS---SSLvaiV~~~qpr~Lkv~~~K   76 (391)
T KOG2110|consen    5 KPTINFIGFNQDSTLLSVGSKDGY-KIFSCSPFEK----CFSKDTEGVSIVEMLFS---SSLVAIVSIKQPRKLKVVHFK   76 (391)
T ss_pred             CcceeeeeeccceeEEEccCCCce-eEEecCchHH----hhcccCCCeEEEEeecc---cceeEEEecCCCceEEEEEcc
Confidence            346777779988888999999986 7787764321    00000011123333443   2455444443  347888888


Q ss_pred             CCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEE
Q 022716           98 SGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIA  177 (293)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  177 (293)
                      ....+-...+...+.++.+..  +.|+++-++. |.++|+++.+.++.+..-                 ..+..++.+++
T Consensus        77 k~~~ICe~~fpt~IL~VrmNr--~RLvV~Lee~-IyIydI~~MklLhTI~t~-----------------~~n~~gl~AlS  136 (391)
T KOG2110|consen   77 KKTTICEIFFPTSILAVRMNR--KRLVVCLEES-IYIYDIKDMKLLHTIETT-----------------PPNPKGLCALS  136 (391)
T ss_pred             cCceEEEEecCCceEEEEEcc--ceEEEEEccc-EEEEecccceeehhhhcc-----------------CCCccceEeec
Confidence            776666666777788888765  4566665544 999999998887764321                 01122234455


Q ss_pred             ECCCCCEEEEec--CCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCc-EEEEEcCCCCEEEEEecC-
Q 022716          178 IDPMGRYFAVGS--ADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLF-IDISNVHTGRTVHQIPCR-  253 (293)
Q Consensus       178 ~~~~~~~l~~gs--~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~-i~iw~~~~~~~~~~~~~~-  253 (293)
                      +++.+.++|--+  ..|.|.+||..+...+..+..|+.++.+++|+|+|.+|||+|+.|+ |+++.+.+|+++..+.-. 
T Consensus       137 ~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~  216 (391)
T KOG2110|consen  137 PNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGT  216 (391)
T ss_pred             cCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCc
Confidence            555566766543  3688999999999999999999999999999999999999999998 689999999988776422 


Q ss_pred             --CCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeeecC
Q 022716          254 --AAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFENA  293 (293)
Q Consensus       254 --~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~~~  293 (293)
                        ..|-+|+|+|++++|+.+|..        ++++|+-+|++
T Consensus       217 ~~~~IySL~Fs~ds~~L~~sS~T--------eTVHiFKL~~~  250 (391)
T KOG2110|consen  217 YPVSIYSLSFSPDSQFLAASSNT--------ETVHIFKLEKV  250 (391)
T ss_pred             eeeEEEEEEECCCCCeEEEecCC--------CeEEEEEeccc
Confidence              257789999999999999865        67888887753

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.82  E-value=4e-18  Score=138.00  Aligned_cols=261  Identities=16%  Similarity=0.246  Sum_probs=171.9

Q ss_pred             eeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCC------C------CCceeEEEeeCCcCCeeEEEEcCCCCCE
Q 022716           14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPH------G------HGKVKDIELRGHADSVDQLCWDPKHADL   81 (293)
Q Consensus        14 ~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~------~------~~~~~~~~~~~h~~~i~~~~~~~~~~~~   81 (293)
                      ..+.+|...|.++.|+|+|+.||||+.+|.|.+|.....      .      ..-.....+.+|.+.|+.++|.|+ +.+
T Consensus        59 s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d-~~~  137 (434)
T KOG1009|consen   59 SSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPD-SNF  137 (434)
T ss_pred             ecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCC-Cce
Confidence            457899999999999999999999999999999987510      0      001223457789999999999997 578


Q ss_pred             EEEEeCCCeEEEEeCCCCeeeeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecC
Q 022716           82 IATASGDKTVRLWDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMT  160 (293)
Q Consensus        82 l~s~~~d~~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~  160 (293)
                      +++++-|..+++||+..|....... +...+..++|.|-++++++-+.|...+.+++......+...... ...-..+..
T Consensus       138 l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~-m~~~~~~~~  216 (434)
T KOG1009|consen  138 LVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDI-MPAKAFNER  216 (434)
T ss_pred             eeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeE-eeecccCCC
Confidence            9999999999999999998777654 34456679999999999999999877777765544333222100 000011111


Q ss_pred             CCEEEEecCCCC----EEEEEECCCCCEEEEecC---------CCcEEEEeCCC-CEEEEEeeccCCCeeEEEEccC---
Q 022716          161 GEMFFLTTGNAG----CYCIAIDPMGRYFAVGSA---------DSLVSLWDISE-MLCVRTFTKLEWPVRTISFSHT---  223 (293)
Q Consensus       161 ~~~~~~~~~~~~----~~~~~~~~~~~~l~~gs~---------d~~i~iwd~~~-~~~~~~~~~~~~~v~~l~~sp~---  223 (293)
                      .....-..++..    .--++|+|+|.++++.+.         -++.++|+-+. .++...+.....+...+.|+|-   
T Consensus       217 e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~e  296 (434)
T KOG1009|consen  217 EGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYE  296 (434)
T ss_pred             CcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEE
Confidence            111111111111    113577888888887642         23344454322 1122233344455666666551   


Q ss_pred             --------------CCEEEEecCCCcEEEEEcCCCCEEEEEe--cCCCcceeEECCCCCeEEEEEcCCC
Q 022716          224 --------------GDYIASASEDLFIDISNVHTGRTVHQIP--CRAAMNSVEWNPKYNLLAYAGDDKN  276 (293)
Q Consensus       224 --------------~~~l~s~s~d~~i~iw~~~~~~~~~~~~--~~~~i~~~~~sp~~~~la~~~~d~~  276 (293)
                                    .+.++.-.....+++||.++...+....  +-..|+.++|+++|+.++..|.|+.
T Consensus       297 lrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGy  365 (434)
T KOG1009|consen  297 LRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGF  365 (434)
T ss_pred             eccccccccccccccceEEEEeecceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCc
Confidence                          1233334445678999998876654432  4568999999999999999999973

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.82  E-value=7.9e-19  Score=147.40  Aligned_cols=231  Identities=12%  Similarity=0.203  Sum_probs=170.6

Q ss_pred             eecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCC---CC-CCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCe
Q 022716           15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEP---HG-HGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKT   90 (293)
Q Consensus        15 ~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~---~~-~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~   90 (293)
                      ++-.|...|+.++|.|....|++|+-||++++|++..   .. ........+.+|.++|.++++.+. .+.++||+-||+
T Consensus       289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n-~~~~ysgg~Dg~  367 (577)
T KOG0642|consen  289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSN-GEHCYSGGIDGT  367 (577)
T ss_pred             eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCC-ceEEEeeccCce
Confidence            4557889999999999999999999999999999932   11 112334578999999999998765 578899999999


Q ss_pred             EEEEeCCCCe----------eeeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccce--e---eeecccceeee
Q 022716           91 VRLWDARSGK----------CSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKP--I---HRRKFGYEVNE  154 (293)
Q Consensus        91 i~vwd~~~~~----------~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~--~---~~~~~~~~~~~  154 (293)
                      |+.|++....          ....+. +.+.+..+++++....|++++.||++++|+.....+  .   .....+..+..
T Consensus       368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~  447 (577)
T KOG0642|consen  368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDR  447 (577)
T ss_pred             eeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEee
Confidence            9999654211          111222 234455788998888999999999999999866554  1   11111111211


Q ss_pred             eEEecC-------------------CCEEEEecCC-------CCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEe
Q 022716          155 IAWNMT-------------------GEMFFLTTGN-------AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF  208 (293)
Q Consensus       155 v~~~~~-------------------~~~~~~~~~~-------~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~  208 (293)
                      ..|.+.                   ....++.+..       ..+..+..+|...+..++..|+.|+++|..++..+.+.
T Consensus       448 ~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~  527 (577)
T KOG0642|consen  448 TSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSM  527 (577)
T ss_pred             ccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchhe
Confidence            222110                   0111111111       23456788999999999999999999999999999999


Q ss_pred             eccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCE
Q 022716          209 TKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRT  246 (293)
Q Consensus       209 ~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~  246 (293)
                      ..|...++++++-|+|.+|++++.|+.+.+|.......
T Consensus       528 ~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~  565 (577)
T KOG0642|consen  528 VAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTC  565 (577)
T ss_pred             eeccceecceeecCCCceEEeecCCceeehhhccchhe
Confidence            99999999999999999999999999999998865443

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.82  E-value=9.6e-19  Score=145.00  Aligned_cols=218  Identities=17%  Similarity=0.335  Sum_probs=167.0

Q ss_pred             EEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeee
Q 022716           23 VHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCS  102 (293)
Q Consensus        23 v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~  102 (293)
                      -.|++......++++|+..+.|+|||+..+    .....+.+|...|+.+.++..+ .+|++++..|.|.|..+.++...
T Consensus        82 ~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~k----l~hr~lkdh~stvt~v~YN~~D-eyiAsvs~gGdiiih~~~t~~~t  156 (673)
T KOG4378|consen   82 AFCVACASQSLYEISGGQSGCVKIWDLRAK----LIHRFLKDHQSTVTYVDYNNTD-EYIASVSDGGDIIIHGTKTKQKT  156 (673)
T ss_pred             HHHHhhhhcceeeeccCcCceeeehhhHHH----HHhhhccCCcceeEEEEecCCc-ceeEEeccCCcEEEEecccCccc
Confidence            345555556689999999999999999742    2233578999999999998764 68999999999999999887655


Q ss_pred             eeeeec-CceE-EEEEcCCCCE-EEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEEC
Q 022716          103 QQAELS-GENI-NITYKPDGTH-IAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAID  179 (293)
Q Consensus       103 ~~~~~~-~~~~-~~~~~~~~~~-l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  179 (293)
                      ..+... +..+ -+.|+|..+. |.+++.+|.+.+||.....+...                   +...|.+++--|+|+
T Consensus       157 t~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~-------------------~~~~HsAP~~gicfs  217 (673)
T KOG4378|consen  157 TTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFH-------------------ASEAHSAPCRGICFS  217 (673)
T ss_pred             cceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccc-------------------hhhhccCCcCcceec
Confidence            555543 3443 5788987765 45667789999999987665432                   123355666678888


Q ss_pred             CCC-CEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCE-EEEE-ecCCCc
Q 022716          180 PMG-RYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRT-VHQI-PCRAAM  256 (293)
Q Consensus       180 ~~~-~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~-~~~~-~~~~~i  256 (293)
                      |.. .++++.+.|..|++||.........+ .++-|..+++|+++|.+|+.|+..|.|..||++..+. +..+ .+...|
T Consensus       218 psne~l~vsVG~Dkki~~yD~~s~~s~~~l-~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sV  296 (673)
T KOG4378|consen  218 PSNEALLVSVGYDKKINIYDIRSQASTDRL-TYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASV  296 (673)
T ss_pred             CCccceEEEecccceEEEeeccccccccee-eecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccce
Confidence            865 56888999999999999876655554 4566999999999999999999999999999987543 4444 345679


Q ss_pred             ceeEECCCC
Q 022716          257 NSVEWNPKY  265 (293)
Q Consensus       257 ~~~~~sp~~  265 (293)
                      .+|+|-|.-
T Consensus       297 t~vafq~s~  305 (673)
T KOG4378|consen  297 TRVAFQPSP  305 (673)
T ss_pred             eEEEeeecc
Confidence            999997653

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.82  E-value=1.1e-19  Score=163.66  Aligned_cols=211  Identities=18%  Similarity=0.254  Sum_probs=165.6

Q ss_pred             ceeecCccccEEEEEECCCCC-eEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716           13 SREYTGHKKKVHSVAWNCTGT-KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (293)
Q Consensus        13 ~~~~~~h~~~v~~l~~s~~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i   91 (293)
                      ...+.-|++.|..|.|++.+. +||+|+.||.|.|||+.....+-..  .-..-.+.|.+++|+....+.|+|++.+|.+
T Consensus       109 la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~--~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~  186 (1049)
T KOG0307|consen  109 LATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTP--GSQAPPSEIKCLSWNRKVSHILASGSPSGRA  186 (1049)
T ss_pred             HhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCC--CCCCCcccceEeccchhhhHHhhccCCCCCc
Confidence            455778999999999999765 9999999999999999753221111  0112346799999998888899999999999


Q ss_pred             EEEeCCCCeeeeeeeecC---ceEEEEEcCCCC-EEEEEeCCC---eEEEEEccccc-eeeeecccceeeeeEEecCCCE
Q 022716           92 RLWDARSGKCSQQAELSG---ENINITYKPDGT-HIAVGNRDD---ELTILDVRKFK-PIHRRKFGYEVNEIAWNMTGEM  163 (293)
Q Consensus        92 ~vwd~~~~~~~~~~~~~~---~~~~~~~~~~~~-~l~~~~~d~---~i~l~d~~~~~-~~~~~~~~~~~~~v~~~~~~~~  163 (293)
                      .|||++..+.+-.+....   ....++|+|+.. .+++++.|.   .|.+||+|... +++                   
T Consensus       187 ~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k-------------------  247 (1049)
T KOG0307|consen  187 VIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLK-------------------  247 (1049)
T ss_pred             eeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchh-------------------
Confidence            999999876544433222   245789999864 667776554   68999998643 222                   


Q ss_pred             EEEecCCCCEEEEEECCCC-CEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCC-EEEEecCCCcEEEEEc
Q 022716          164 FFLTTGNAGCYCIAIDPMG-RYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGD-YIASASEDLFIDISNV  241 (293)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~-~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~-~l~s~s~d~~i~iw~~  241 (293)
                       .+..|+.++.++.|.+.+ .++++++.|+.|.+|+.++++.+.++..-.+++..+.|+|... .++.++-||.|.|+++
T Consensus       248 -~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl  326 (1049)
T KOG0307|consen  248 -ILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSL  326 (1049)
T ss_pred             -hhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeee
Confidence             124566778888888877 8899999999999999999999999988778999999999876 7888899999999998


Q ss_pred             CCCC
Q 022716          242 HTGR  245 (293)
Q Consensus       242 ~~~~  245 (293)
                      ..+.
T Consensus       327 ~~~~  330 (1049)
T KOG0307|consen  327 QGTD  330 (1049)
T ss_pred             ecCC
Confidence            7654

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.82  E-value=1.6e-16  Score=134.40  Aligned_cols=238  Identities=15%  Similarity=0.154  Sum_probs=152.2

Q ss_pred             ccccEEEEEECCCCCeEEEE-eCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEe-CCCeEEEEeC
Q 022716           19 HKKKVHSVAWNCTGTKLASG-SVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATAS-GDKTVRLWDA   96 (293)
Q Consensus        19 h~~~v~~l~~s~~~~~l~s~-~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~-~d~~i~vwd~   96 (293)
                      +.+....++++|++++|+.+ ..++.|.+|+++...  ................+.++|++. .+++++ .++.|.+|++
T Consensus        33 ~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g--~l~~~~~~~~~~~p~~i~~~~~g~-~l~v~~~~~~~v~v~~~  109 (330)
T PRK11028         33 VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDG--ALTFAAESPLPGSPTHISTDHQGR-FLFSASYNANCVSVSPL  109 (330)
T ss_pred             cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCC--ceEEeeeecCCCCceEEEECCCCC-EEEEEEcCCCeEEEEEE
Confidence            34567889999999998665 458999999997322  221111111222356788999764 555554 4899999998


Q ss_pred             CCC-e---eeeeeeecCceEEEEEcCCCCEEEEEe-CCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCC
Q 022716           97 RSG-K---CSQQAELSGENINITYKPDGTHIAVGN-RDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNA  171 (293)
Q Consensus        97 ~~~-~---~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  171 (293)
                      +.. .   ..........+..++++|+++++++.. .++.|.+||+++...+.... ...            ... ....
T Consensus       110 ~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~-~~~------------~~~-~~g~  175 (330)
T PRK11028        110 DKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQE-PAE------------VTT-VEGA  175 (330)
T ss_pred             CCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccC-CCc------------eec-CCCC
Confidence            642 2   122222223456788999999886655 56999999997633221000 000            000 0112


Q ss_pred             CEEEEEECCCCCEEEEecC-CCcEEEEeCCC--C--EEEEEeeccC------CCeeEEEEccCCCEEEEec-CCCcEEEE
Q 022716          172 GCYCIAIDPMGRYFAVGSA-DSLVSLWDISE--M--LCVRTFTKLE------WPVRTISFSHTGDYIASAS-EDLFIDIS  239 (293)
Q Consensus       172 ~~~~~~~~~~~~~l~~gs~-d~~i~iwd~~~--~--~~~~~~~~~~------~~v~~l~~sp~~~~l~s~s-~d~~i~iw  239 (293)
                      ....++|+|+++++.+++. +++|.+|+++.  +  +.+.++....      .....+.|+|+|++|+++. .++.|.+|
T Consensus       176 ~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~  255 (330)
T PRK11028        176 GPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVF  255 (330)
T ss_pred             CCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEE
Confidence            2446889999999877776 89999999863  2  3333332211      1234688999999998875 47899999


Q ss_pred             EcCCCC-E---EEEEecCCCcceeEECCCCCeEEEEEc
Q 022716          240 NVHTGR-T---VHQIPCRAAMNSVEWNPKYNLLAYAGD  273 (293)
Q Consensus       240 ~~~~~~-~---~~~~~~~~~i~~~~~sp~~~~la~~~~  273 (293)
                      ++.... .   +.........+.+.|+|+|++|++++.
T Consensus       256 ~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~  293 (330)
T PRK11028        256 SVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQ  293 (330)
T ss_pred             EEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEc
Confidence            986432 2   233333345678999999999998875

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.81  E-value=8.8e-19  Score=142.47  Aligned_cols=199  Identities=21%  Similarity=0.324  Sum_probs=145.4

Q ss_pred             EEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeee
Q 022716           24 HSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQ  103 (293)
Q Consensus        24 ~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~  103 (293)
                      .+++|+.+|..|++|+.||++|+|+..+.    ........|.+.|.++.|+|+ +.+|++.+.| ..+||+.+++.++.
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~----~t~l~e~~~~~eV~DL~FS~d-gk~lasig~d-~~~VW~~~~g~~~a  221 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSM----LTILEEIAHHAEVKDLDFSPD-GKFLASIGAD-SARVWSVNTGAALA  221 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcc----hhhhhhHhhcCccccceeCCC-CcEEEEecCC-ceEEEEeccCchhh
Confidence            78999999999999999999999996532    122356689999999999997 5789999999 99999999996555


Q ss_pred             eee-e--cCceEEEEEcCCC---CEEEEE-e-CCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEE
Q 022716          104 QAE-L--SGENINITYKPDG---THIAVG-N-RDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYC  175 (293)
Q Consensus       104 ~~~-~--~~~~~~~~~~~~~---~~l~~~-~-~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  175 (293)
                      ... .  ......|.|..|+   .+.+.. . ..+.+..+|+.....               +.-....-.......+.+
T Consensus       222 ~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~---------------~~~l~~~~~~~~~~siSs  286 (398)
T KOG0771|consen  222 RKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSG---------------SNFLRLRKKIKRFKSISS  286 (398)
T ss_pred             hcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeecc---------------ccccchhhhhhccCccee
Confidence            433 1  1223357787665   222222 2 234555555432110               000011112233456889


Q ss_pred             EEECCCCCEEEEecCCCcEEEEeCCCCEEEEEe-eccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCC
Q 022716          176 IAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF-TKLEWPVRTISFSHTGDYIASASEDLFIDISNVHT  243 (293)
Q Consensus       176 ~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~-~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~  243 (293)
                      ++++++|+++|.|+.||.|-|++..+.++++-. +.|...|+.+.|+|+.+++++-+.|..+.+..+.-
T Consensus       287 l~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  287 LAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             EEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence            999999999999999999999999988777654 45888999999999999999999999888877643

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.81  E-value=1.2e-18  Score=148.32  Aligned_cols=254  Identities=17%  Similarity=0.254  Sum_probs=163.4

Q ss_pred             EEECCC---CCeEEEEeCCCcEEEeecCCCCCC--ceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCe
Q 022716           26 VAWNCT---GTKLASGSVDQTARVWHIEPHGHG--KVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGK  100 (293)
Q Consensus        26 l~~s~~---~~~l~s~~~dg~v~iw~~~~~~~~--~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~  100 (293)
                      ..|++.   .+.|+.+..||.|.++|.......  .........|.+.|.++.|.| +..+|++++.|.++++||++.++
T Consensus        55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~s~  133 (720)
T KOG0321|consen   55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKTSR  133 (720)
T ss_pred             ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCC-CceeEEEccCCceeeeeeeccce
Confidence            566543   356899999999999997643211  112235678999999999999 67789999999999999999988


Q ss_pred             eeee---eeecCceEEEEEcCCC-CEEEEEeCCCeEEEEEccccceeeeeccccee----eeeEEecCCCE---E-EEec
Q 022716          101 CSQQ---AELSGENINITYKPDG-THIAVGNRDDELTILDVRKFKPIHRRKFGYEV----NEIAWNMTGEM---F-FLTT  168 (293)
Q Consensus       101 ~~~~---~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~----~~v~~~~~~~~---~-~~~~  168 (293)
                      +...   +.+.+.+.+++|.|.. ..+++|+.||.+.|||++-...-....+...+    +.-- .|...+   . .-..
T Consensus       134 l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~p-tpskp~~kr~~k~kA  212 (720)
T KOG0321|consen  134 LVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAP-TPSKPLKKRIRKWKA  212 (720)
T ss_pred             eecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCC-CCCchhhcccccccc
Confidence            7654   3455667788998855 56888999999999999754311110000000    0000 000000   0 0001


Q ss_pred             CCCCEEE---EEECCCCCEEEEecC-CCcEEEEeCCCCEEEEE--------eecc---CCCeeEEEEccCCCEEEEecCC
Q 022716          169 GNAGCYC---IAIDPMGRYFAVGSA-DSLVSLWDISEMLCVRT--------FTKL---EWPVRTISFSHTGDYIASASED  233 (293)
Q Consensus       169 ~~~~~~~---~~~~~~~~~l~~gs~-d~~i~iwd~~~~~~~~~--------~~~~---~~~v~~l~~sp~~~~l~s~s~d  233 (293)
                      ....+..   +.+..|...||+++. |+.|++||+++......        +..+   .-.+.++.....|.+|.....|
T Consensus       213 ~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD  292 (720)
T KOG0321|consen  213 ASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTD  292 (720)
T ss_pred             ccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecC
Confidence            1112222   444567788888887 99999999987543322        1122   1246666666778888766679


Q ss_pred             CcEEEEEcCCCCE--EEEEec--CCCc-ceeEECCCCCeEEEEEcCCCCCCCC
Q 022716          234 LFIDISNVHTGRT--VHQIPC--RAAM-NSVEWNPKYNLLAYAGDDKNKYQAD  281 (293)
Q Consensus       234 ~~i~iw~~~~~~~--~~~~~~--~~~i-~~~~~sp~~~~la~~~~d~~~~~~~  281 (293)
                      +.|++|++.+...  +..+.+  ...+ ..-..+|++.++++|+.|...|+|.
T Consensus       293 ~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~  345 (720)
T KOG0321|consen  293 NSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWV  345 (720)
T ss_pred             CcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeee
Confidence            9999999976532  111111  1111 2345789999999999998877654

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.81  E-value=1.4e-18  Score=149.78  Aligned_cols=208  Identities=17%  Similarity=0.228  Sum_probs=165.2

Q ss_pred             ecCccccEEEEEECCC---CCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCC-CCEEEEEeCCCeE
Q 022716           16 YTGHKKKVHSVAWNCT---GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKH-ADLIATASGDKTV   91 (293)
Q Consensus        16 ~~~h~~~v~~l~~s~~---~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~-~~~l~s~~~d~~i   91 (293)
                      ...|.+.|.||.||..   .++||+|+.|.-|++||+..+-   .....+-+|...|+++.|...+ ....+|++.|+.|
T Consensus       497 ~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny---~l~qtld~HSssITsvKFa~~gln~~MiscGADksi  573 (1080)
T KOG1408|consen  497 MEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNY---DLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSI  573 (1080)
T ss_pred             eecccceeEEEeecCchhhhHhhhhccCCceEEEEeccccc---chhhhhcccccceeEEEEeecCCceEEEeccCchhh
Confidence            3589999999999853   3689999999999999997432   2223577899999999997654 3468899999887


Q ss_pred             EEEeCCC---Ceeee-ee--eecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEE
Q 022716           92 RLWDARS---GKCSQ-QA--ELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFF  165 (293)
Q Consensus        92 ~vwd~~~---~~~~~-~~--~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  165 (293)
                      .+--.+.   +.... ..  -.+...+.|+..|..+++++++.|..|++||+.+.+..+..+-..               
T Consensus       574 mFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~---------------  638 (1080)
T KOG1408|consen  574 MFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSR---------------  638 (1080)
T ss_pred             heehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccc---------------
Confidence            5432221   11111 00  112334578999999999999999999999999988766554221               


Q ss_pred             EecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCC
Q 022716          166 LTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHT  243 (293)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~  243 (293)
                        .+++....+..+|.|.|+|+...|+++.++|.-+++++....+|...|+.+.|.+|.+.|.+.+.||.|.||.+..
T Consensus       639 --~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  639 --DHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             --cCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence              2345567788899999999999999999999999999999999999999999999999999999999999998753

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.80  E-value=6.4e-18  Score=133.32  Aligned_cols=232  Identities=19%  Similarity=0.280  Sum_probs=164.0

Q ss_pred             cccEEEEEEC-------CCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCC---eeEEEEcCCCCCEEEEEeCCC
Q 022716           20 KKKVHSVAWN-------CTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADS---VDQLCWDPKHADLIATASGDK   89 (293)
Q Consensus        20 ~~~v~~l~~s-------~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~---i~~~~~~~~~~~~l~s~~~d~   89 (293)
                      ...|....|-       |+.+++|+.+.|.-|++||........  +..--.|.+.   -.+++|+|++. .|+ ++...
T Consensus       104 g~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lra--Sy~~ydh~de~taAhsL~Fs~DGe-qlf-aGykr  179 (406)
T KOG2919|consen  104 GETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRA--SYRAYDHQDEYTAAHSLQFSPDGE-QLF-AGYKR  179 (406)
T ss_pred             CCEEEEEEeeeccccCCCccceeeeccccCceeeeecccccccc--chhhhhhHHhhhhheeEEecCCCC-eEe-ecccc
Confidence            4566666664       678899999999999999987542211  1111234433   34789999865 554 57889


Q ss_pred             eEEEEeC-CCCeeee--eee------ecCceEEEEEcCCC-CEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEec
Q 022716           90 TVRLWDA-RSGKCSQ--QAE------LSGENINITYKPDG-THIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNM  159 (293)
Q Consensus        90 ~i~vwd~-~~~~~~~--~~~------~~~~~~~~~~~~~~-~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~  159 (293)
                      .|+++|+ +.|+--.  ...      ..+-..+++|+|-. +.+++|+...++-|+.-....|                 
T Consensus       180 cirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~p-----------------  242 (406)
T KOG2919|consen  180 CIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRP-----------------  242 (406)
T ss_pred             eEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCc-----------------
Confidence            9999998 6664211  111      12334568899854 5788888887777766433333                 


Q ss_pred             CCCEEEEecCCCCEEEEEECCCCCEEEEecC-CCcEEEEeCCCC-EEEEEeeccCC-CeeEEE--EccCCCEEEEecCCC
Q 022716          160 TGEMFFLTTGNAGCYCIAIDPMGRYFAVGSA-DSLVSLWDISEM-LCVRTFTKLEW-PVRTIS--FSHTGDYIASASEDL  234 (293)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~-d~~i~iwd~~~~-~~~~~~~~~~~-~v~~l~--~sp~~~~l~s~s~d~  234 (293)
                         +..+..+.+.|+-+.|.++|+.|.+|+. |-.|..||++.. .++..+..|.. .=.-|-  ..|++++||+|+.||
T Consensus       243 ---l~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG  319 (406)
T KOG2919|consen  243 ---LQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDG  319 (406)
T ss_pred             ---eeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCc
Confidence               3444567788899999999999999876 678999999864 34555666654 222343  458999999999999


Q ss_pred             cEEEEEcCC-CCEEEEEe-cCCCcceeEECCCCCeEEEEEcCC
Q 022716          235 FIDISNVHT-GRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDK  275 (293)
Q Consensus       235 ~i~iw~~~~-~~~~~~~~-~~~~i~~~~~sp~~~~la~~~~d~  275 (293)
                      .|++||.++ +..+..++ +...+|.++++|-..++|+++..+
T Consensus       320 ~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGqr  362 (406)
T KOG2919|consen  320 SVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQR  362 (406)
T ss_pred             cEEEEecCCCCCcccccccccccccceecCcccceeeeccCce
Confidence            999999998 66566554 456799999999999999998543

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.80  E-value=6.4e-16  Score=133.57  Aligned_cols=242  Identities=29%  Similarity=0.446  Sum_probs=179.5

Q ss_pred             eecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCc-CCeeEEEE-cCCCCCEEEEEeC-CCeE
Q 022716           15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHA-DSVDQLCW-DPKHADLIATASG-DKTV   91 (293)
Q Consensus        15 ~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~-~~i~~~~~-~~~~~~~l~s~~~-d~~i   91 (293)
                      .+.+|...+.++.|.+.+..++.++.|+.+.+|+.....   .....+.++. ..+..+.+ .++....++..+. |+.+
T Consensus        60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  136 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGE---KLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTV  136 (466)
T ss_pred             eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCc---eeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccE
Confidence            456899999999999999999999999999999987532   1222333433 35666666 6654434555455 9999


Q ss_pred             EEEeCCC-Ceeeeeeee-cCceEEEEEcCCCCEEEEEeC-CCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEec
Q 022716           92 RLWDARS-GKCSQQAEL-SGENINITYKPDGTHIAVGNR-DDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTT  168 (293)
Q Consensus        92 ~vwd~~~-~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~-d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  168 (293)
                      .+||... ......... ...+..+.|+|++..++.++. |+.+.+|+++.......                    +..
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~  196 (466)
T COG2319         137 KLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLST--------------------LAG  196 (466)
T ss_pred             EEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEe--------------------ecc
Confidence            9999987 444444443 345567999999998888886 99999999876332221                    122


Q ss_pred             CCCCEEEEEECCCCC-EEEEecCCCcEEEEeCCCCEEEE-EeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCE
Q 022716          169 GNAGCYCIAIDPMGR-YFAVGSADSLVSLWDISEMLCVR-TFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRT  246 (293)
Q Consensus       169 ~~~~~~~~~~~~~~~-~l~~gs~d~~i~iwd~~~~~~~~-~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~  246 (293)
                      +...+.+++++|++. .+++++.|+.|++||...+.... .+..|.... ...|+|++.++++++.|+.+++|+......
T Consensus       197 ~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  275 (466)
T COG2319         197 HTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS  275 (466)
T ss_pred             CCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc
Confidence            456778899999998 55555999999999988777776 577777665 448999999999999999999999987654


Q ss_pred             -EEEE-ecCCCcceeEECCCCCeEEEEEcCCCCCCC
Q 022716          247 -VHQI-PCRAAMNSVEWNPKYNLLAYAGDDKNKYQA  280 (293)
Q Consensus       247 -~~~~-~~~~~i~~~~~sp~~~~la~~~~d~~~~~~  280 (293)
                       +..+ .+...+.++.|+|++..+++++.|+.+.+|
T Consensus       276 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~  311 (466)
T COG2319         276 LLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLW  311 (466)
T ss_pred             EEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEE
Confidence             3333 345689999999988888888777433333

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=2.5e-17  Score=135.43  Aligned_cols=222  Identities=14%  Similarity=0.220  Sum_probs=172.5

Q ss_pred             CccccEEEEEECCCCC-eEEEEeCCCcEEEeecCCCCCCceeEEEeeCCc-CCeeEEEEcCCCCCEEEEEeCCCeEEEEe
Q 022716           18 GHKKKVHSVAWNCTGT-KLASGSVDQTARVWHIEPHGHGKVKDIELRGHA-DSVDQLCWDPKHADLIATASGDKTVRLWD   95 (293)
Q Consensus        18 ~h~~~v~~l~~s~~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~-~~i~~~~~~~~~~~~l~s~~~d~~i~vwd   95 (293)
                      --+.+|.+++|.|+|. .+++++.......||+.........  ...++. ..+.....+|+ +.+|+..|..|.|.+.-
T Consensus       255 l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~--~~~g~e~~~~e~FeVShd-~~fia~~G~~G~I~lLh  331 (514)
T KOG2055|consen  255 LEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLK--PPYGVEEKSMERFEVSHD-SNFIAIAGNNGHIHLLH  331 (514)
T ss_pred             eccCccceeeecCCCceEEEecccceEEEEeecccccccccc--CCCCcccchhheeEecCC-CCeEEEcccCceEEeeh
Confidence            3467999999999999 8999999999999999753222211  223443 34566677776 46899999999999999


Q ss_pred             CCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeeccccee--eeeEEecCCCEEEEecCC---
Q 022716           96 ARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEV--NEIAWNMTGEMFFLTTGN---  170 (293)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~---  170 (293)
                      ..+++.+..+...+.+..+.|+.+++.|++++.+|.|.+||++....+++......+  ..++-++.+.++...+..   
T Consensus       332 akT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiV  411 (514)
T KOG2055|consen  332 AKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIV  411 (514)
T ss_pred             hhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceE
Confidence            999999999999999999999999999999999999999999998887776544333  334444555544433322   


Q ss_pred             ------------------------CCEEEEEECCCCCEEEEecC--CCcEEEEeCCCCEEEEEeecc---CCCeeEEEEc
Q 022716          171 ------------------------AGCYCIAIDPMGRYFAVGSA--DSLVSLWDISEMLCVRTFTKL---EWPVRTISFS  221 (293)
Q Consensus       171 ------------------------~~~~~~~~~~~~~~l~~gs~--d~~i~iwd~~~~~~~~~~~~~---~~~v~~l~~s  221 (293)
                                              ..|.++.|+|+..+||.+|.  ++.+++-.+.+......+...   -..|++++||
T Consensus       412 NIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFS  491 (514)
T KOG2055|consen  412 NIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFS  491 (514)
T ss_pred             EEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEec
Confidence                                    23678999999999888765  678999999887665555432   2469999999


Q ss_pred             cCCCEEEEecCCCcEEEEEcC
Q 022716          222 HTGDYIASASEDLFIDISNVH  242 (293)
Q Consensus       222 p~~~~l~s~s~d~~i~iw~~~  242 (293)
                      |.|.+||.|..+|.+.+|.++
T Consensus       492 P~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  492 PNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             CCCceEEeecCCCceeeEeec
Confidence            999999999999999999764

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.79  E-value=4.3e-18  Score=141.16  Aligned_cols=235  Identities=16%  Similarity=0.239  Sum_probs=170.5

Q ss_pred             cEEEEEECCCCCeEEEE--eCCCcEEEeecCCCCCCceeEE-EeeCCcCC-eeEEEEcCCCCCEEEEEeCCCeEEEEeCC
Q 022716           22 KVHSVAWNCTGTKLASG--SVDQTARVWHIEPHGHGKVKDI-ELRGHADS-VDQLCWDPKHADLIATASGDKTVRLWDAR   97 (293)
Q Consensus        22 ~v~~l~~s~~~~~l~s~--~~dg~v~iw~~~~~~~~~~~~~-~~~~h~~~-i~~~~~~~~~~~~l~s~~~d~~i~vwd~~   97 (293)
                      .+.++.|+.... |+++  +.|..+++|.-... .+.+... .+.+.... |.+..+    +-++++|+..+.|+|||++
T Consensus        36 g~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~-~~~Vp~~~k~~gd~~~Cv~~~s~----S~y~~sgG~~~~Vkiwdl~  109 (673)
T KOG4378|consen   36 GDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGK-TPEVPRVRKLTGDNAFCVACASQ----SLYEISGGQSGCVKIWDLR  109 (673)
T ss_pred             cceeeeccccce-EEEeecCCceeEEEecccCC-CCccceeeccccchHHHHhhhhc----ceeeeccCcCceeeehhhH
Confidence            388888887653 5444  55889999975532 2222222 22333222 333322    3578999999999999998


Q ss_pred             CCeeeeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEE
Q 022716           98 SGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCI  176 (293)
Q Consensus        98 ~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  176 (293)
                      ...+.+... +...+.++.+...+.++++++-.|.|.+..+.++........+.          +         ..+--+
T Consensus       110 ~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~s----------g---------qsvRll  170 (673)
T KOG4378|consen  110 AKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDS----------G---------QSVRLL  170 (673)
T ss_pred             HHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCC----------C---------CeEEEe
Confidence            655544443 44567889999889999999999999999987765444333221          1         112246


Q ss_pred             EECCCCCE-EEEecCCCcEEEEeCCCCEEEEE-eeccCCCeeEEEEccCCC-EEEEecCCCcEEEEEcCCCCEEEEEecC
Q 022716          177 AIDPMGRY-FAVGSADSLVSLWDISEMLCVRT-FTKLEWPVRTISFSHTGD-YIASASEDLFIDISNVHTGRTVHQIPCR  253 (293)
Q Consensus       177 ~~~~~~~~-l~~gs~d~~i~iwd~~~~~~~~~-~~~~~~~v~~l~~sp~~~-~l~s~s~d~~i~iw~~~~~~~~~~~~~~  253 (293)
                      .++|..++ |.+++.+|.|.+||+..+.+... .+.|..|-..|+|+|.+. +||+.+.|..|++||....+....+...
T Consensus       171 ~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~  250 (673)
T KOG4378|consen  171 RYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYS  250 (673)
T ss_pred             ecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeec
Confidence            67777654 67789999999999987665544 356888999999999875 6799999999999999988878888888


Q ss_pred             CCcceeEECCCCCeEEEEEcCCCCCCCC
Q 022716          254 AAMNSVEWNPKYNLLAYAGDDKNKYQAD  281 (293)
Q Consensus       254 ~~i~~~~~sp~~~~la~~~~d~~~~~~~  281 (293)
                      .|...++|+|+|.+|+.|...+.++..|
T Consensus       251 ~Plstvaf~~~G~~L~aG~s~G~~i~YD  278 (673)
T KOG4378|consen  251 HPLSTVAFSECGTYLCAGNSKGELIAYD  278 (673)
T ss_pred             CCcceeeecCCceEEEeecCCceEEEEe
Confidence            8999999999999999999876655543

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.79  E-value=5.8e-17  Score=139.26  Aligned_cols=266  Identities=17%  Similarity=0.209  Sum_probs=171.3

Q ss_pred             cccccceeecCccccEEEEEECCCCC---eEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEE
Q 022716            8 FKNLHSREYTGHKKKVHSVAWNCTGT---KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIAT   84 (293)
Q Consensus         8 ~~~~~~~~~~~h~~~v~~l~~s~~~~---~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s   84 (293)
                      ++........||.++|+|+.|-|+..   ++++|+.||.|++|.+..+.  ......+.+|...+.++.-.   .....+
T Consensus        42 ~k~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~--~~~i~~~~g~~~~~~cv~a~---~~~~~~  116 (764)
T KOG1063|consen   42 EKILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEY--LIKIYTIQGHCKECVCVVAR---SSVMTC  116 (764)
T ss_pred             ccceeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehh--eEEEEeecCcceeEEEEEee---eeEEEe
Confidence            33344556789999999999999887   89999999999999997432  23334566677776666432   223333


Q ss_pred             EeCCCeEEEEeCCCCe--eeeeee----------------------------------------------ecCc---eEE
Q 022716           85 ASGDKTVRLWDARSGK--CSQQAE----------------------------------------------LSGE---NIN  113 (293)
Q Consensus        85 ~~~d~~i~vwd~~~~~--~~~~~~----------------------------------------------~~~~---~~~  113 (293)
                      ...|+.+.+||.+..+  +...+.                                              +.++   +.+
T Consensus       117 ~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrs  196 (764)
T KOG1063|consen  117 KAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRS  196 (764)
T ss_pred             eccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhh
Confidence            3679999999985444  110000                                              0000   112


Q ss_pred             EEEcC---CCCEEEEEeCCCeEEEEEccccc----eeeeecccceeeeeEEecCCCE-------EEEecCCCCEEEEEEC
Q 022716          114 ITYKP---DGTHIAVGNRDDELTILDVRKFK----PIHRRKFGYEVNEIAWNMTGEM-------FFLTTGNAGCYCIAID  179 (293)
Q Consensus       114 ~~~~~---~~~~l~~~~~d~~i~l~d~~~~~----~~~~~~~~~~~~~v~~~~~~~~-------~~~~~~~~~~~~~~~~  179 (293)
                      ++|..   +.-+|++++.|..|+||.+.-..    ..++.......+.-.+...++.       ..+..|++-++++.|+
T Consensus       197 l~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~  276 (764)
T KOG1063|consen  197 LAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWH  276 (764)
T ss_pred             hhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEc
Confidence            34433   23478888999999999874322    1111110000000001101111       1123567889999999


Q ss_pred             CCCCEEEEecCCCcEEEEeCCCC--E-----EEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEE--E--
Q 022716          180 PMGRYFAVGSADSLVSLWDISEM--L-----CVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTV--H--  248 (293)
Q Consensus       180 ~~~~~l~~gs~d~~i~iwd~~~~--~-----~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~--~--  248 (293)
                      |.+..|+++|+|+++.+|.....  .     ++....+........-|+|++..+++-+.-|-.++|..+....-  .  
T Consensus       277 p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~  356 (764)
T KOG1063|consen  277 PEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPV  356 (764)
T ss_pred             cchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccc
Confidence            99999999999999999976543  2     22233333445778889999999999999999999984432211  1  


Q ss_pred             EEecCCCcceeEECCCCCeEEEEEcCCCCC
Q 022716          249 QIPCRAAMNSVEWNPKYNLLAYAGDDKNKY  278 (293)
Q Consensus       249 ~~~~~~~i~~~~~sp~~~~la~~~~d~~~~  278 (293)
                      .-.+-..|.+|+|+|.|.+|.++|.|..=+
T Consensus       357 iSGH~~~V~dv~W~psGeflLsvs~DQTTR  386 (764)
T KOG1063|consen  357 ISGHVDGVKDVDWDPSGEFLLSVSLDQTTR  386 (764)
T ss_pred             cccccccceeeeecCCCCEEEEecccccee
Confidence            123456799999999999999999997443

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.79  E-value=6.4e-17  Score=141.20  Aligned_cols=223  Identities=20%  Similarity=0.272  Sum_probs=149.1

Q ss_pred             ceeecCccccEEEEEECCCCCeEEEEeCC---CcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCC
Q 022716           13 SREYTGHKKKVHSVAWNCTGTKLASGSVD---QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDK   89 (293)
Q Consensus        13 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~d---g~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~   89 (293)
                      .+.++.|...+.+.+|||||++|+.++.+   ..|.+||+....  ......+.+|   ...++|+|++..++++.+.++
T Consensus       196 ~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~--~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g  270 (429)
T PRK01742        196 QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGA--RKVVASFRGH---NGAPAFSPDGSRLAFASSKDG  270 (429)
T ss_pred             ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCc--eEEEecCCCc---cCceeECCCCCEEEEEEecCC
Confidence            45567888899999999999999988754   369999986432  1111223333   346799998655555555788


Q ss_pred             eEEEE--eCCCCeeeeeeeecCceEEEEEcCCCCEEEEEe-CCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEE
Q 022716           90 TVRLW--DARSGKCSQQAELSGENINITYKPDGTHIAVGN-RDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFL  166 (293)
Q Consensus        90 ~i~vw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  166 (293)
                      .+.+|  |+.++................|+|||+.++..+ .++...+|+++.......                   .+
T Consensus       271 ~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~-------------------~l  331 (429)
T PRK01742        271 VLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGAS-------------------LV  331 (429)
T ss_pred             cEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeE-------------------Ee
Confidence            76655  666655443333344456789999999877665 567888887643211000                   00


Q ss_pred             ecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEc--CCC
Q 022716          167 TTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNV--HTG  244 (293)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~--~~~  244 (293)
                       .+..  .+..++|+++.++..+.++ +.+||+.++.... +... ....+++|+|+|++|+.++.++.+.+|.+  .+|
T Consensus       332 -~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~-lt~~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G  405 (429)
T PRK01742        332 -GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEV-LSST-FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADG  405 (429)
T ss_pred             -cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEE-ecCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCC
Confidence             1111  3467899999998887765 5669998875432 2222 23466889999999999999998888775  357


Q ss_pred             CEEEEEec-CCCcceeEECCCC
Q 022716          245 RTVHQIPC-RAAMNSVEWNPKY  265 (293)
Q Consensus       245 ~~~~~~~~-~~~i~~~~~sp~~  265 (293)
                      +.+..+.. ...+...+|||-.
T Consensus       406 ~~~~~l~~~~g~~~~p~wsp~~  427 (429)
T PRK01742        406 RFKARLPGSDGQVKFPAWSPYL  427 (429)
T ss_pred             CceEEccCCCCCCCCcccCCCC
Confidence            77776654 4558889999953

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.79  E-value=3.5e-18  Score=140.24  Aligned_cols=204  Identities=15%  Similarity=0.195  Sum_probs=152.7

Q ss_pred             eeCCcCCeeEEEEcCCCC-CEEEEEeCCCeEEEEeCCCCee----eeee-eecCceEEEEEcCCC-CEEEEEeCCCeEEE
Q 022716           62 LRGHADSVDQLCWDPKHA-DLIATASGDKTVRLWDARSGKC----SQQA-ELSGENINITYKPDG-THIAVGNRDDELTI  134 (293)
Q Consensus        62 ~~~h~~~i~~~~~~~~~~-~~l~s~~~d~~i~vwd~~~~~~----~~~~-~~~~~~~~~~~~~~~-~~l~~~~~d~~i~l  134 (293)
                      .+-+..+|++++|+|... .++++|..-|+|-+||+.+.+.    ...+ .+.+++.++.|+|.. ..+++.+.||++++
T Consensus       182 ~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~  261 (498)
T KOG4328|consen  182 AKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRL  261 (498)
T ss_pred             eEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeee
Confidence            345778999999999876 6888899999999999964322    1222 234567789999854 57888999999999


Q ss_pred             EEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEE-EEEeeccCC
Q 022716          135 LDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLC-VRTFTKLEW  213 (293)
Q Consensus       135 ~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~-~~~~~~~~~  213 (293)
                      .|+++.........                  .........+.++.+..-++.|+.=|...+||++.... ...+.-|+.
T Consensus       262 ~D~~~~i~e~v~s~------------------~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~k  323 (498)
T KOG4328|consen  262 QDFEGNISEEVLSL------------------DTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKK  323 (498)
T ss_pred             eeecchhhHHHhhc------------------CccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhc
Confidence            99876432111100                  01122334566777777788888777999999986533 445566888


Q ss_pred             CeeEEEEccCCC-EEEEecCCCcEEEEEcCCC--C---EEEEEecCCCcceeEECCCCCeEEEEEcCCCCCCCCcc
Q 022716          214 PVRTISFSHTGD-YIASASEDLFIDISNVHTG--R---TVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEG  283 (293)
Q Consensus       214 ~v~~l~~sp~~~-~l~s~s~d~~i~iw~~~~~--~---~~~~~~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~  283 (293)
                      .|.+|+++|... +|||||.|.+++|||.+.-  +   .+..+.++.+|+++.|||.+.-|++.+.|.+|+++|..
T Consensus       324 KI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss  399 (498)
T KOG4328|consen  324 KITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS  399 (498)
T ss_pred             ccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence            999999999875 5799999999999998752  2   25677888999999999998779999999887777653

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.77  E-value=1.7e-17  Score=138.91  Aligned_cols=242  Identities=12%  Similarity=0.151  Sum_probs=160.4

Q ss_pred             CccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeE----EEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEE
Q 022716           18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKD----IELRGHADSVDQLCWDPKHADLIATASGDKTVRL   93 (293)
Q Consensus        18 ~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~----~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~v   93 (293)
                      -|...|.|+.|+.....+.+++.+..++-|++..........    +....|..+-.. . -..+.+.|+-++.||.+.+
T Consensus        12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~-~-~g~~~d~~~i~s~DGkf~i   89 (737)
T KOG1524|consen   12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSS-G-GGKGSDTLLICSNDGRFVI   89 (737)
T ss_pred             ccceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCcccccccccc-C-CCCCcceEEEEcCCceEEE
Confidence            567778899998777655555554555555654322111100    000012111000 0 0123456778899999988


Q ss_pred             EeCCCCeeeeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEec----
Q 022716           94 WDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTT----  168 (293)
Q Consensus        94 wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----  168 (293)
                      .+ +.++...... +.+.+.+-+|+|||.-|++.++||.|++|.-...........+..+.++.|.|..+.+.+..    
T Consensus        90 l~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~  168 (737)
T KOG1524|consen   90 LN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQGGHI  168 (737)
T ss_pred             ec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEecCCeE
Confidence            76 3444333333 34556677899999999999999999999843322222234567889999999876555432    


Q ss_pred             ----------------CCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecC
Q 022716          169 ----------------GNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASE  232 (293)
Q Consensus       169 ----------------~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~  232 (293)
                                      |++-+.+++|+|..+++++|++|-.-++||... ..+..-..|+.+|++++|+|+ +.++.+|.
T Consensus       169 ~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G-~~Lf~S~~~ey~ITSva~npd-~~~~v~S~  246 (737)
T KOG1524|consen  169 SIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQG-ANLFTSAAEEYAITSVAFNPE-KDYLLWSY  246 (737)
T ss_pred             EEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccC-cccccCChhccceeeeeeccc-cceeeeee
Confidence                            345578999999999999999999999999644 445555689999999999999 55555554


Q ss_pred             CCcEEEEEcCCCCEEEEEecCCCcceeEECCCCCeEEEEEcCC
Q 022716          233 DLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDK  275 (293)
Q Consensus       233 d~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~d~  275 (293)
                      . ++++          ..+..++|..++|||||.+++.|...+
T Consensus       247 n-t~R~----------~~p~~GSifnlsWS~DGTQ~a~gt~~G  278 (737)
T KOG1524|consen  247 N-TARF----------SSPRVGSIFNLSWSADGTQATCGTSTG  278 (737)
T ss_pred             e-eeee----------cCCCccceEEEEEcCCCceeeccccCc
Confidence            2 2331          223356799999999999999888765

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.77  E-value=5.6e-15  Score=127.63  Aligned_cols=243  Identities=30%  Similarity=0.498  Sum_probs=177.0

Q ss_pred             cceeecCccccEEEEEECCCCCeEEEEeC-CCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCe
Q 022716           12 HSREYTGHKKKVHSVAWNCTGTKLASGSV-DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKT   90 (293)
Q Consensus        12 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~-dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~   90 (293)
                      ....+.+|...|.+++|+|++..+++++. |+.+++|++...    .....+.+|...|..+.|+|.+...+++++.|+.
T Consensus       147 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~  222 (466)
T COG2319         147 LIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTG----KPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGT  222 (466)
T ss_pred             EEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCC----ceEEeeccCCCceEEEEEcCCcceEEEEecCCCc
Confidence            34667899999999999999999998886 999999998741    1223455699999999999875435666699999


Q ss_pred             EEEEeCCCCeeee-eeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccce-eeeecccceeeeeEEecCCCEEEEec
Q 022716           91 VRLWDARSGKCSQ-QAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKP-IHRRKFGYEVNEIAWNMTGEMFFLTT  168 (293)
Q Consensus        91 i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~  168 (293)
                      +++||...+.... .+..+.......|+|++..+++++.|+.+++||++.... ..                    ....
T Consensus       223 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~--------------------~~~~  282 (466)
T COG2319         223 IRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLR--------------------TLSG  282 (466)
T ss_pred             EEEEECCCCcEEeeecCCCCcceeEeECCCCCEEEEecCCCcEEEeeecCCCcEEE--------------------EEec
Confidence            9999988666655 333333332127999998899999999999999876543 11                    0123


Q ss_pred             CCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEee--ccCCCeeEEEEccCCCEEEEe-cCCCcEEEEEcCCCC
Q 022716          169 GNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT--KLEWPVRTISFSHTGDYIASA-SEDLFIDISNVHTGR  245 (293)
Q Consensus       169 ~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~--~~~~~v~~l~~sp~~~~l~s~-s~d~~i~iw~~~~~~  245 (293)
                      +...+.++.+.|++..+++++.|+.+.+||...........  .|...+..+.|.+++..++.+ ..|+.+.+|+.....
T Consensus       283 ~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  362 (466)
T COG2319         283 HSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK  362 (466)
T ss_pred             CCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence            35567788999988888889999899999998876666655  677779999994343556555 688999999998877


Q ss_pred             EEEEEecCCCcceeEECCCCCeEEE-EEcCCCCCC
Q 022716          246 TVHQIPCRAAMNSVEWNPKYNLLAY-AGDDKNKYQ  279 (293)
Q Consensus       246 ~~~~~~~~~~i~~~~~sp~~~~la~-~~~d~~~~~  279 (293)
                      ..........+..+.+++ ...+.. ++.+..+.+
T Consensus       363 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  396 (466)
T COG2319         363 PLKTLEGHSNVLSVSFSP-DGRVVSSGSTDGTVRL  396 (466)
T ss_pred             eeEEecCCceEEEEEECC-CCCEEEEecCCCceEE
Confidence            333333333488999999 533333 455543333

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.76  E-value=2.8e-16  Score=137.49  Aligned_cols=248  Identities=16%  Similarity=0.235  Sum_probs=169.5

Q ss_pred             ccccEEEEEECCCC-CeEEEEeCCCcEEEeecCCCCCC--ceeEEEeeCCcCCeeEEEEcCCCC-CEEEEEeCCCeEEEE
Q 022716           19 HKKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHG--KVKDIELRGHADSVDQLCWDPKHA-DLIATASGDKTVRLW   94 (293)
Q Consensus        19 h~~~v~~l~~s~~~-~~l~s~~~dg~v~iw~~~~~~~~--~~~~~~~~~h~~~i~~~~~~~~~~-~~l~s~~~d~~i~vw   94 (293)
                      -...|+|+.|+|.. +.+|.|..+|+|-+||+......  .........|..++..+.|..... .-++|++.||.|..|
T Consensus       241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W  320 (555)
T KOG1587|consen  241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW  320 (555)
T ss_pred             cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence            35799999999965 56678888999999999865432  122233456889999999965322 347899999999999


Q ss_pred             eCCCCeeeee------e-------eecCceEEEEEcC-CCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecC
Q 022716           95 DARSGKCSQQ------A-------ELSGENINITYKP-DGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMT  160 (293)
Q Consensus        95 d~~~~~~~~~------~-------~~~~~~~~~~~~~-~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~  160 (293)
                      +++.-.....      .       .......++.|.+ +-..+++|+.+|.|.--.-....+....         .+   
T Consensus       321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~---------~~---  388 (555)
T KOG1587|consen  321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEV---------SY---  388 (555)
T ss_pred             eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccc---------cc---
Confidence            8765433111      0       1112345678876 4457999999998876443332221100         00   


Q ss_pred             CCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCC-CCEEEEEeeccCCCeeEEEEccCCC-EEEEecCCCcEEE
Q 022716          161 GEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDIS-EMLCVRTFTKLEWPVRTISFSHTGD-YIASASEDLFIDI  238 (293)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~-~~~~~~~~~~~~~~v~~l~~sp~~~-~l~s~s~d~~i~i  238 (293)
                      ........+.+.++++.++|-+..+...+.|.+++||... .-.++..+..+...|.+++|||... .+|++..||.|.+
T Consensus       389 ~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~i  468 (555)
T KOG1587|consen  389 KGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDI  468 (555)
T ss_pred             cccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceeh
Confidence            0112345667788999999987655444449999999977 5555656666666799999999865 5688889999999


Q ss_pred             EEcCCCC--EEEE-EecCCCcceeEECCCCCeEEEEEcCCCCC
Q 022716          239 SNVHTGR--TVHQ-IPCRAAMNSVEWNPKYNLLAYAGDDKNKY  278 (293)
Q Consensus       239 w~~~~~~--~~~~-~~~~~~i~~~~~sp~~~~la~~~~d~~~~  278 (293)
                      ||+....  .+.. ..+....+.+.|++.|..||.|+..|++.
T Consensus       469 WDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~  511 (555)
T KOG1587|consen  469 WDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTH  511 (555)
T ss_pred             hhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEE
Confidence            9987543  2222 22344567889999999999998775433

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.76  E-value=1.4e-18  Score=151.91  Aligned_cols=260  Identities=20%  Similarity=0.283  Sum_probs=182.5

Q ss_pred             eeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEE
Q 022716           14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL   93 (293)
Q Consensus        14 ~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~v   93 (293)
                      +.+-||.+.|.|+.|...|.+++||+.|-.||||..+..    .....++||++.|+.++.+.. ...++++++|..|++
T Consensus       184 krLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~----~~lAs~rGhs~ditdlavs~~-n~~iaaaS~D~vIrv  258 (1113)
T KOG0644|consen  184 KRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETA----RCLASCRGHSGDITDLAVSSN-NTMIAAASNDKVIRV  258 (1113)
T ss_pred             HHHHhhhhheeeeeeccccceEeecCccceeeeeeccch----hhhccCCCCccccchhccchh-hhhhhhcccCceEEE
Confidence            446699999999999999999999999999999996532    233467899999999998654 457899999999999


Q ss_pred             EeCCCCeeeeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeee----eccc--ceeeeeEEecCCCEEEE
Q 022716           94 WDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR----RKFG--YEVNEIAWNMTGEMFFL  166 (293)
Q Consensus        94 wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~----~~~~--~~~~~v~~~~~~~~~~~  166 (293)
                      |-+..+..+..+. +.+.+++++|+|-.    +.+.||++++||.+ ..+...    .++.  ..+-.+.+-..+..+..
T Consensus       259 Wrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r-~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~T  333 (1113)
T KOG0644|consen  259 WRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDAR-LEPRIYVPRPLKFTEKDLVDSILFENNGDRFLT  333 (1113)
T ss_pred             EecCCCchHHHHhccccceeeeccCccc----cCCCCCceEecccc-ccccccCCCCCCcccccceeeeecccccccccc
Confidence            9999988776554 56788999999863    66779999999987 111100    0000  00111111111111110


Q ss_pred             ecC-----CCCEEEEEECCCCC-----------EEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCE-EEE
Q 022716          167 TTG-----NAGCYCIAIDPMGR-----------YFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDY-IAS  229 (293)
Q Consensus       167 ~~~-----~~~~~~~~~~~~~~-----------~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~-l~s  229 (293)
                      ...     ....-++++...+.           +.+++=.+-.+.+|++..+...+.+.+|...+..+.++|-+.. ..+
T Consensus       334 gs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~ms  413 (1113)
T KOG0644|consen  334 GSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMS  413 (1113)
T ss_pred             ccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhh
Confidence            000     00111223333333           3334444556788999999888888999999999999997654 578


Q ss_pred             ecCCCcEEEEEcCCCCEEEEEe-cCCCcceeEECCCCCeEEEEEcCCCCCCCCcc
Q 022716          230 ASEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEG  283 (293)
Q Consensus       230 ~s~d~~i~iw~~~~~~~~~~~~-~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~  283 (293)
                      ++.||...|||+-.|-.++.+. .+..+...+||++|..++...+=+.++|...|
T Consensus       414 ag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~g  468 (1113)
T KOG0644|consen  414 AGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTG  468 (1113)
T ss_pred             ccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEeccC
Confidence            8999999999999887765542 36678888999999998888766666665443

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=6.6e-17  Score=128.39  Aligned_cols=190  Identities=19%  Similarity=0.246  Sum_probs=137.4

Q ss_pred             CeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCC-CCCEEEEEeCCCeEEEEeCCCCeeeeeeeecC--
Q 022716           33 TKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK-HADLIATASGDKTVRLWDARSGKCSQQAELSG--  109 (293)
Q Consensus        33 ~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~--  109 (293)
                      ..+|++-+.|.|++||....   . ..-.+.+|...++.+.|... ..+.+.+|+.||+|++||++.......+....  
T Consensus        41 ~~vav~lSngsv~lyd~~tg---~-~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~  116 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTG---Q-LLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQS  116 (376)
T ss_pred             eeEEEEecCCeEEEEeccch---h-hhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCC
Confidence            46889999999999998752   1 12256788888888888553 56789999999999999998876555444332  


Q ss_pred             --ceEEEEEcCCCCEEEEEe----CCCeEEEEEccccce-eeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCC
Q 022716          110 --ENINITYKPDGTHIAVGN----RDDELTILDVRKFKP-IHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMG  182 (293)
Q Consensus       110 --~~~~~~~~~~~~~l~~~~----~d~~i~l~d~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (293)
                        +.++++..-.+..+++|+    .+-.+.+||.|..+. ++.                   +..+|++.++++.|+|..
T Consensus       117 ~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~-------------------~~eSH~DDVT~lrFHP~~  177 (376)
T KOG1188|consen  117 GTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQ-------------------LNESHNDDVTQLRFHPSD  177 (376)
T ss_pred             CCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhh-------------------hhhhccCcceeEEecCCC
Confidence              345566555667777776    356799999987553 221                   234678899999999975


Q ss_pred             -CEEEEecCCCcEEEEeCCCCEE---EEEeeccCCCeeEEEEccCC-CEEEEecCCCcEEEEEcCCCC
Q 022716          183 -RYFAVGSADSLVSLWDISEMLC---VRTFTKLEWPVRTISFSHTG-DYIASASEDLFIDISNVHTGR  245 (293)
Q Consensus       183 -~~l~~gs~d~~i~iwd~~~~~~---~~~~~~~~~~v~~l~~sp~~-~~l~s~s~d~~i~iw~~~~~~  245 (293)
                       +.|++||-||.|.+||++.-..   +.....+...|..+.|..++ +.+.+-+..+..++|+++.+.
T Consensus       178 pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~  245 (376)
T KOG1188|consen  178 PNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGS  245 (376)
T ss_pred             CCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCC
Confidence             7899999999999999975421   11223455668888887665 457777788888888776654

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.76  E-value=3e-17  Score=126.13  Aligned_cols=248  Identities=17%  Similarity=0.173  Sum_probs=170.1

Q ss_pred             ecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEee-CCcCCeeEEEEcCCCCCEEEEEeCCCeEEEE
Q 022716           16 YTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELR-GHADSVDQLCWDPKHADLIATASGDKTVRLW   94 (293)
Q Consensus        16 ~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~-~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vw   94 (293)
                      +-+|.+.|+++.|-.+++ |.+|..-|.|++|++..+...    ..+. .|...|+.+...|.  +.+.+=+.|+.+.+|
T Consensus        10 LRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~----~~~r~~g~~~it~lq~~p~--d~l~tqgRd~~L~lw   82 (323)
T KOG0322|consen   10 LRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDL----PLIRLFGRLFITNLQSIPN--DSLDTQGRDPLLILW   82 (323)
T ss_pred             eccccchheehhhccchh-hhcccccceEEEEEeecCccc----hhhhhhccceeeceeecCC--cchhhcCCCceEEEE
Confidence            448999999999987775 889999999999999754211    1233 46677888877774  456788999999999


Q ss_pred             eCCCCe--------------eeeeeee-----------cC------------ceEE---------------EEEc---CC
Q 022716           95 DARSGK--------------CSQQAEL-----------SG------------ENIN---------------ITYK---PD  119 (293)
Q Consensus        95 d~~~~~--------------~~~~~~~-----------~~------------~~~~---------------~~~~---~~  119 (293)
                      ++.-+.              |...+..           ++            ....               +.+.   .+
T Consensus        83 ~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c  162 (323)
T KOG0322|consen   83 TIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHAC  162 (323)
T ss_pred             EccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccc
Confidence            886521              1111000           00            0001               1121   11


Q ss_pred             CC--EEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEE
Q 022716          120 GT--HIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLW  197 (293)
Q Consensus       120 ~~--~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iw  197 (293)
                      ++  .+++|.++|.+.+||+.....+-..+..          ........++..++.++.+.+.-..=++|+.+..+..|
T Consensus       163 ~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~----------~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~  232 (323)
T KOG0322|consen  163 GSTFLLLAGYESGHVVIWDLSTGDKIIQLPQS----------SKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMY  232 (323)
T ss_pred             cceEEEEEeccCCeEEEEEccCCceeeccccc----------cccccchhhccCcceeeeechhhcCCcCCCccccceee
Confidence            22  4677888999999998765322111110          01112345667788888888877777889999999999


Q ss_pred             eCCCC--E-EEE-EeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEe-cCCCcceeEECCCCCeEEEEE
Q 022716          198 DISEM--L-CVR-TFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAG  272 (293)
Q Consensus       198 d~~~~--~-~~~-~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~-~~~~i~~~~~sp~~~~la~~~  272 (293)
                      .+...  . .+. +..--.-.|..+.+=||++.+||++-|+.|++|+.++...+-.+. +...|++++|+|+.+.+|.||
T Consensus       233 Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaas  312 (323)
T KOG0322|consen  233 SLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAAS  312 (323)
T ss_pred             eeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhcc
Confidence            87532  1 122 222223368889999999999999999999999999998776554 456899999999999999999


Q ss_pred             cCCCCCCC
Q 022716          273 DDKNKYQA  280 (293)
Q Consensus       273 ~d~~~~~~  280 (293)
                      .|..+-.|
T Consensus       313 kD~rISLW  320 (323)
T KOG0322|consen  313 KDARISLW  320 (323)
T ss_pred             CCceEEee
Confidence            99654433

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.76  E-value=3.2e-16  Score=126.59  Aligned_cols=226  Identities=15%  Similarity=0.218  Sum_probs=171.0

Q ss_pred             CccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCC--CeEEEEe
Q 022716           18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD--KTVRLWD   95 (293)
Q Consensus        18 ~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d--~~i~vwd   95 (293)
                      +-.++|..++..  +..|++|-.+|.+++|..............+..+ ..+..+.-++.....+++||..  ..+.+||
T Consensus       103 l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwd  179 (412)
T KOG3881|consen  103 LGTKSIKGLKLA--DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWD  179 (412)
T ss_pred             cccccccchhhc--CCEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeee
Confidence            334556666543  3478889999999999987543222222333333 4566777777777788889998  8899999


Q ss_pred             CCCCeeeeeee----------ecCceEEEEEcCC--CCEEEEEeCCCeEEEEEccccc-eeeeecccceeeeeEEecCCC
Q 022716           96 ARSGKCSQQAE----------LSGENINITYKPD--GTHIAVGNRDDELTILDVRKFK-PIHRRKFGYEVNEIAWNMTGE  162 (293)
Q Consensus        96 ~~~~~~~~~~~----------~~~~~~~~~~~~~--~~~l~~~~~d~~i~l~d~~~~~-~~~~~~~~~~~~~v~~~~~~~  162 (293)
                      +...+.+....          .+--...+.|.+.  ...+++++..+.+++||.+... |+..                 
T Consensus       180 le~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~-----------------  242 (412)
T KOG3881|consen  180 LEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQ-----------------  242 (412)
T ss_pred             cccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeE-----------------
Confidence            98875433211          1111235778776  7899999999999999987532 2221                 


Q ss_pred             EEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEE-eeccCCCeeEEEEccCCCEEEEecCCCcEEEEEc
Q 022716          163 MFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRT-FTKLEWPVRTISFSHTGDYIASASEDLFIDISNV  241 (293)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~-~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~  241 (293)
                         +.....++.++...|.++++.+|..-+.+..||++.+..+.. +.+..+.|++|..+|..++||+++.|..++|+|+
T Consensus       243 ---fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~  319 (412)
T KOG3881|consen  243 ---FDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDI  319 (412)
T ss_pred             ---eccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeec
Confidence               223356778999999999999999999999999999987776 7888899999999999999999999999999999


Q ss_pred             CCCCEEEEEecCCCcceeEECCCCC
Q 022716          242 HTGRTVHQIPCRAAMNSVEWNPKYN  266 (293)
Q Consensus       242 ~~~~~~~~~~~~~~i~~~~~sp~~~  266 (293)
                      ++.+++++.-.+..++.|-+.++-+
T Consensus       320 ktrkll~kvYvKs~lt~il~~~~~n  344 (412)
T KOG3881|consen  320 KTRKLLHKVYVKSRLTFILLRDDVN  344 (412)
T ss_pred             ccchhhhhhhhhccccEEEecCCcc
Confidence            9988888777777888888876544

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.75  E-value=1e-15  Score=123.93  Aligned_cols=195  Identities=15%  Similarity=0.215  Sum_probs=142.8

Q ss_pred             eeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCee-------eeeeeecC-ceEEEEEcCCC-CEEEEEeCCCeE
Q 022716           62 LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKC-------SQQAELSG-ENINITYKPDG-THIAVGNRDDEL  132 (293)
Q Consensus        62 ~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~-------~~~~~~~~-~~~~~~~~~~~-~~l~~~~~d~~i  132 (293)
                      +.||.++|..+.|+|.+...++|||+|.+|.||.+-.+-.       +..+..+. .+--++|+|.- +.|++++.|+++
T Consensus        77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v  156 (472)
T KOG0303|consen   77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTV  156 (472)
T ss_pred             ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceE
Confidence            5689999999999999888999999999999999854422       22233333 23457899854 568889999999


Q ss_pred             EEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccC
Q 022716          133 TILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLE  212 (293)
Q Consensus       133 ~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~  212 (293)
                      .+|++.+++.+-.                     ..+.+.|+++.|+.+|.++++.+.|..|+|||.++++.+.+-..|.
T Consensus       157 ~iWnv~tgeali~---------------------l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~he  215 (472)
T KOG0303|consen  157 SIWNVGTGEALIT---------------------LDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHE  215 (472)
T ss_pred             EEEeccCCceeee---------------------cCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeeccccc
Confidence            9999987654322                     2266778999999999999999999999999999999888877776


Q ss_pred             C--CeeEEEEccCCCEEEEe---cCCCcEEEEEcCCCCE---EEEEecCCCcceeEECCCCCeEEEEEc-CCCCC
Q 022716          213 W--PVRTISFSHTGDYIASA---SEDLFIDISNVHTGRT---VHQIPCRAAMNSVEWNPKYNLLAYAGD-DKNKY  278 (293)
Q Consensus       213 ~--~v~~l~~sp~~~~l~s~---s~d~~i~iw~~~~~~~---~~~~~~~~~i~~~~~sp~~~~la~~~~-d~~~~  278 (293)
                      +  +.+. -|-.+|..+.||   -.+..+-+||...-..   ...+...+.|-==-|.|+.+++-.+|. |++|+
T Consensus       216 G~k~~Ra-ifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IR  289 (472)
T KOG0303|consen  216 GAKPARA-IFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIR  289 (472)
T ss_pred             CCCccee-EEeccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceE
Confidence            4  3444 477788866666   3578899999765433   334444444433346777777666654 44333

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.74  E-value=3e-16  Score=140.73  Aligned_cols=244  Identities=18%  Similarity=0.249  Sum_probs=160.6

Q ss_pred             ccEEEEEECC--CCCeEEEEeCCCcEEEeecCCCCCCceeEE----EeeCCc----CCeeEEEEcCCCCCEEEEEeCCCe
Q 022716           21 KKVHSVAWNC--TGTKLASGSVDQTARVWHIEPHGHGKVKDI----ELRGHA----DSVDQLCWDPKHADLIATASGDKT   90 (293)
Q Consensus        21 ~~v~~l~~s~--~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~----~~~~h~----~~i~~~~~~~~~~~~l~s~~~d~~   90 (293)
                      ..|+.+.+-.  |...+++|+.||.||||+-...........    .+.++.    +.-.-+.|....+ .|+++|.-..
T Consensus      1110 t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G-~Ll~tGd~r~ 1188 (1387)
T KOG1517|consen 1110 TRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSG-HLLVTGDVRS 1188 (1387)
T ss_pred             CccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCC-eEEecCCeeE
Confidence            4688888754  335789999999999997543321111111    122221    1113346766544 5566666889


Q ss_pred             EEEEeCCCCeeeeeeeecCc--eEEEEE-cCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEe
Q 022716           91 VRLWDARSGKCSQQAELSGE--NINITY-KPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLT  167 (293)
Q Consensus        91 i~vwd~~~~~~~~~~~~~~~--~~~~~~-~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  167 (293)
                      |+|||.....+...+.....  ++++.- .+.|..+++|..||.+++||.|...+....        ..|         -
T Consensus      1189 IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v--------~~~---------R 1251 (1387)
T KOG1517|consen 1189 IRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLV--------CVY---------R 1251 (1387)
T ss_pred             EEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccc--------eee---------c
Confidence            99999988776665544432  333332 245789999999999999998865432110        001         1


Q ss_pred             cCCCC--EEEEEECCCC-CEEEEecCCCcEEEEeCCCCEEEEEee--cc---CCCeeEEEEccCCCEEEEecCCCcEEEE
Q 022716          168 TGNAG--CYCIAIDPMG-RYFAVGSADSLVSLWDISEMLCVRTFT--KL---EWPVRTISFSHTGDYIASASEDLFIDIS  239 (293)
Q Consensus       168 ~~~~~--~~~~~~~~~~-~~l~~gs~d~~i~iwd~~~~~~~~~~~--~~---~~~v~~l~~sp~~~~l~s~s~d~~i~iw  239 (293)
                      .++..  |..+.+.+.| ..|++|+.||.|++||++.......+.  .|   ....+++..++....+|+|+. +.|+||
T Consensus      1252 ~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy 1330 (1387)
T KOG1517|consen 1252 EHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIY 1330 (1387)
T ss_pred             ccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEE
Confidence            12222  5667777755 369999999999999998642222221  22   235999999999999999999 999999


Q ss_pred             EcCCCCEEEEE-------e-cCCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeeec
Q 022716          240 NVHTGRTVHQI-------P-CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN  292 (293)
Q Consensus       240 ~~~~~~~~~~~-------~-~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~~  292 (293)
                      ++...+ +..+       . -..++.+++|||..-++|.|+.|        .++-||.-||
T Consensus      1331 ~~~G~~-l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~D--------s~V~iYs~~k 1382 (1387)
T KOG1517|consen 1331 SLSGEQ-LNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSAD--------STVSIYSCEK 1382 (1387)
T ss_pred             ecChhh-hcccccCcccccCcCCCcceeeecchhHhhhhccCC--------ceEEEeecCC
Confidence            985432 2211       1 23467899999999999999877        5778887775

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=3.8e-15  Score=131.38  Aligned_cols=264  Identities=16%  Similarity=0.205  Sum_probs=173.2

Q ss_pred             CccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCC
Q 022716           18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDAR   97 (293)
Q Consensus        18 ~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~   97 (293)
                      .|...++|.+++|.++++|+|..||.|.+|.--...........+.=|.+.|.++.|++++ .+|+|||..+.+.+|.+.
T Consensus       203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G-~~LlSGG~E~VLv~Wq~~  281 (792)
T KOG1963|consen  203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDG-AYLLSGGREGVLVLWQLE  281 (792)
T ss_pred             hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCC-ceEeecccceEEEEEeec
Confidence            5666799999999999999999999999995322011111222355588899999999975 688999999999999999


Q ss_pred             CCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEcccccee---eeecc---------cceeeeeEEecCCCEEE
Q 022716           98 SGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPI---HRRKF---------GYEVNEIAWNMTGEMFF  165 (293)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~---~~~~~---------~~~~~~v~~~~~~~~~~  165 (293)
                      +++....-...+.+..+.++||+.+.++..+|+.|.+..+.+....   .....         ..-...+..+|.-....
T Consensus       282 T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~v  361 (792)
T KOG1963|consen  282 TGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLV  361 (792)
T ss_pred             CCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCcee
Confidence            8884444457788889999999999999999999999865322111   00000         00011122222111111


Q ss_pred             EecC--------------------------------CCCEEEEEECCCCCEEEEec--------C--CCcEEEEeCCCCE
Q 022716          166 LTTG--------------------------------NAGCYCIAIDPMGRYFAVGS--------A--DSLVSLWDISEML  203 (293)
Q Consensus       166 ~~~~--------------------------------~~~~~~~~~~~~~~~l~~gs--------~--d~~i~iwd~~~~~  203 (293)
                      +-.+                                ...++.++.+..|.+++|.-        .  .-.+++|......
T Consensus       362 ln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~  441 (792)
T KOG1963|consen  362 LNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNS  441 (792)
T ss_pred             ecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCc
Confidence            0000                                11345666677788888753        2  2357788764321


Q ss_pred             ---EEE--EeeccCCCeeEEEEc-cCCC-EEEEecCCCcEEEEEcCCCC------------EEEEEecCCCcceeEECCC
Q 022716          204 ---CVR--TFTKLEWPVRTISFS-HTGD-YIASASEDLFIDISNVHTGR------------TVHQIPCRAAMNSVEWNPK  264 (293)
Q Consensus       204 ---~~~--~~~~~~~~v~~l~~s-p~~~-~l~s~s~d~~i~iw~~~~~~------------~~~~~~~~~~i~~~~~sp~  264 (293)
                         .+.  ....|+..+.+.+|. |... .+++++.||.++||-+.+.+            .+..+ +..++++++|+.|
T Consensus       442 kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy-~k~~i~a~~fs~d  520 (792)
T KOG1963|consen  442 KTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSY-HKTPITALCFSQD  520 (792)
T ss_pred             ceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeecc-ccCcccchhhcCC
Confidence               122  123577666666554 4344 79999999999999884322            12222 4678999999999


Q ss_pred             CCeEEEEEcCCCCCCCCcceEEEEeeec
Q 022716          265 YNLLAYAGDDKNKYQADEGVFRIYGFEN  292 (293)
Q Consensus       265 ~~~la~~~~d~~~~~~~~~~~~~~~~~~  292 (293)
                      |..||.+-+|         ++.||++.+
T Consensus       521 Gslla~s~~~---------~Itiwd~~~  539 (792)
T KOG1963|consen  521 GSLLAVSFDD---------TITIWDYDT  539 (792)
T ss_pred             CcEEEEecCC---------EEEEecCCC
Confidence            9888877543         566776643

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.74  E-value=7.3e-16  Score=134.58  Aligned_cols=206  Identities=17%  Similarity=0.192  Sum_probs=135.6

Q ss_pred             CCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCC---CeEEEEeCCCCeeeeeeeecCceEEEEEc
Q 022716           41 DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD---KTVRLWDARSGKCSQQAELSGENINITYK  117 (293)
Q Consensus        41 dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~  117 (293)
                      +..|.+||.+...     ...+..|...+....|+|++. .|+.++.+   ..|.+||+.+++........+....++|+
T Consensus       183 ~~~i~i~d~dg~~-----~~~lt~~~~~v~~p~wSPDG~-~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wS  256 (429)
T PRK01742        183 PYEVRVADYDGFN-----QFIVNRSSQPLMSPAWSPDGS-KLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFS  256 (429)
T ss_pred             eEEEEEECCCCCC-----ceEeccCCCccccceEcCCCC-EEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeEC
Confidence            4689999986422     123556778899999999865 45555443   47999999887644333344455578999


Q ss_pred             CCCCEEEEEe-CCCeEEEE--EccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEec-CCCc
Q 022716          118 PDGTHIAVGN-RDDELTIL--DVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGS-ADSL  193 (293)
Q Consensus       118 ~~~~~l~~~~-~d~~i~l~--d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs-~d~~  193 (293)
                      |||+.|+.+. .++...+|  |+.+....+                     +..+........|+|+|+.++..+ .++.
T Consensus       257 PDG~~La~~~~~~g~~~Iy~~d~~~~~~~~---------------------lt~~~~~~~~~~wSpDG~~i~f~s~~~g~  315 (429)
T PRK01742        257 PDGSRLAFASSKDGVLNIYVMGANGGTPSQ---------------------LTSGAGNNTEPSWSPDGQSILFTSDRSGS  315 (429)
T ss_pred             CCCCEEEEEEecCCcEEEEEEECCCCCeEe---------------------eccCCCCcCCEEECCCCCEEEEEECCCCC
Confidence            9999888765 57766655  544332211                     122233345678899998766554 5788


Q ss_pred             EEEEeCCC-CEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEecCCCcceeEECCCCCeEEEEE
Q 022716          194 VSLWDISE-MLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAG  272 (293)
Q Consensus       194 i~iwd~~~-~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~  272 (293)
                      ..||++.. +.....+ .+..  ...+|+|+|++|+..+.++ +.+||..+++...... .....++.|+|+|.+|++++
T Consensus       316 ~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~-~~~~~~~~~sPdG~~i~~~s  390 (429)
T PRK01742        316 PQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSS-TFLDESPSISPNGIMIIYSS  390 (429)
T ss_pred             ceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecC-CCCCCCceECCCCCEEEEEE
Confidence            88887642 1112222 3332  4578999999998888765 5559998886542222 22346789999999999999


Q ss_pred             cCCCCC
Q 022716          273 DDKNKY  278 (293)
Q Consensus       273 ~d~~~~  278 (293)
                      .++...
T Consensus       391 ~~g~~~  396 (429)
T PRK01742        391 TQGLGK  396 (429)
T ss_pred             cCCCce
Confidence            876554

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.73  E-value=7.8e-17  Score=135.38  Aligned_cols=224  Identities=23%  Similarity=0.359  Sum_probs=151.2

Q ss_pred             ceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCC-CCEEEEEeCCCeE
Q 022716           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKH-ADLIATASGDKTV   91 (293)
Q Consensus        13 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~-~~~l~s~~~d~~i   91 (293)
                      .+++.||.+-|.||+|+.+|.+|++||.|-.+.|||.-..   +.....-.||...|.++.|.|.. ..+++||+.|..|
T Consensus        43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~---KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i  119 (758)
T KOG1310|consen   43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEY---KLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLI  119 (758)
T ss_pred             hhhhccccceecceeecCCCCEEeecCCcceEEeecchhc---ceeeeeecccccceeEEeeeccCCCeEEEeccCcceE
Confidence            4678999999999999999999999999999999998632   22223346899999999999854 4589999999999


Q ss_pred             EEEeCCCCeee----------eeee-ecCceEEEEEcCCC-CEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEec
Q 022716           92 RLWDARSGKCS----------QQAE-LSGENINITYKPDG-THIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNM  159 (293)
Q Consensus        92 ~vwd~~~~~~~----------~~~~-~~~~~~~~~~~~~~-~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~  159 (293)
                      +++|+...+..          ..+. +...+..++..|++ ..+.++++||+++-+|+|........   ..+....-+.
T Consensus       120 ~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~---~~~~~~l~ny  196 (758)
T KOG1310|consen  120 KLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPD---EDCPSILVNY  196 (758)
T ss_pred             EEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCcc---ccccHHHHHh
Confidence            99999753211          1111 11233457777887 78899999999999999864321110   0000000000


Q ss_pred             CCCEEEEecCCCCEEEEEECCCC-CEEEEecCCCcEEEEeCCCC--------E----------EEEEee-ccC-------
Q 022716          160 TGEMFFLTTGNAGCYCIAIDPMG-RYFAVGSADSLVSLWDISEM--------L----------CVRTFT-KLE-------  212 (293)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~-~~l~~gs~d~~i~iwd~~~~--------~----------~~~~~~-~~~-------  212 (293)
                      ...+       -...|+.++|.. .+||+|+.|--.++||.+..        .          +++-+. +|-       
T Consensus       197 ~~~l-------ielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~  269 (758)
T KOG1310|consen  197 NPQL-------IELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNL  269 (758)
T ss_pred             chhh-------heeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCccccc
Confidence            0111       234688899976 57899999999999994321        1          122111 111       


Q ss_pred             ----CCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEE
Q 022716          213 ----WPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQ  249 (293)
Q Consensus       213 ----~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~  249 (293)
                          ...+.+.|+|+|.-|...=....|+++|+..++.+.+
T Consensus       270 ~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~  310 (758)
T KOG1310|consen  270 DRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTP  310 (758)
T ss_pred             ccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCcee
Confidence                1156689999998765554555689999987665433

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.73  E-value=5.1e-17  Score=134.53  Aligned_cols=274  Identities=22%  Similarity=0.221  Sum_probs=196.8

Q ss_pred             eeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCC-CEEEEEeCCCeEE
Q 022716           14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHA-DLIATASGDKTVR   92 (293)
Q Consensus        14 ~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~-~~l~s~~~d~~i~   92 (293)
                      ..+.+|.+-|..+.|+..|..|+|||.|..|.+||.....   .......+|...|..-.|.|..+ .-+++++.||.++
T Consensus       136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~---~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr  212 (559)
T KOG1334|consen  136 KKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGS---PKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVR  212 (559)
T ss_pred             hcccCCCCccceeeecccCceeeccCccceEEeehhhccC---cccccccccccchhhhhccCCCCCcCceeccccCcee
Confidence            3467999999999999999999999999999999986421   11122347888888888887543 3588999999999


Q ss_pred             EEeCCCCe-ee---eeeeecCceEEEEEcCCC-CEEEEEeCCCeEEEEEccccceeeeec-----cc--ceeeeeEEecC
Q 022716           93 LWDARSGK-CS---QQAELSGENINITYKPDG-THIAVGNRDDELTILDVRKFKPIHRRK-----FG--YEVNEIAWNMT  160 (293)
Q Consensus        93 vwd~~~~~-~~---~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~l~d~~~~~~~~~~~-----~~--~~~~~v~~~~~  160 (293)
                      +=.+.... +.   ....+++++..++..|+. ..|.+++.|+.+.-+|++...+.....     ..  .....+.-+|.
T Consensus       213 ~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~  292 (559)
T KOG1334|consen  213 VSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPR  292 (559)
T ss_pred             eeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCC
Confidence            87664332 22   223456777778877754 468889999999999998766533221     11  12344444444


Q ss_pred             CCEEEEecC----------------------------------CCCEEEEEECCCCCEEEEecCCCcEEEEeCC--CC--
Q 022716          161 GEMFFLTTG----------------------------------NAGCYCIAIDPMGRYFAVGSADSLVSLWDIS--EM--  202 (293)
Q Consensus       161 ~~~~~~~~~----------------------------------~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~--~~--  202 (293)
                      ....+...+                                  ...|++++++.++..+++.-.|--|++|.-.  .+  
T Consensus       293 nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~  372 (559)
T KOG1334|consen  293 NTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSE  372 (559)
T ss_pred             CccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCC
Confidence            332222211                                  1247899999888888888889999999532  22  


Q ss_pred             --------EEEEE-eeccCC--CeeEEEE-ccCCCEEEEecCCCcEEEEEcCCCCEEEEEec-CCCcceeEECCCCCeEE
Q 022716          203 --------LCVRT-FTKLEW--PVRTISF-SHTGDYIASASEDLFIDISNVHTGRTVHQIPC-RAAMNSVEWNPKYNLLA  269 (293)
Q Consensus       203 --------~~~~~-~~~~~~--~v~~l~~-sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~-~~~i~~~~~sp~~~~la  269 (293)
                              ...+. +++|.+  .|..+-| -|...|+++||+-|.|.||+-++++.+..|.. +.-||||+=||....||
T Consensus       373 p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLA  452 (559)
T KOG1334|consen  373 PDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLA  452 (559)
T ss_pred             CCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhh
Confidence                    12222 677764  5777775 58899999999999999999999998877754 33589999999999999


Q ss_pred             EEEcCCCCCCCCc-ceEEEEee
Q 022716          270 YAGDDKNKYQADE-GVFRIYGF  290 (293)
Q Consensus       270 ~~~~d~~~~~~~~-~~~~~~~~  290 (293)
                      ++|-|..++||-- +.-|+...
T Consensus       453 sSGid~DVKIWTP~~~er~~~~  474 (559)
T KOG1334|consen  453 SSGIDHDVKIWTPLTAERATEP  474 (559)
T ss_pred             ccCCccceeeecCCccccccCh
Confidence            9999988888765 44444433

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.73  E-value=4e-15  Score=116.88  Aligned_cols=233  Identities=18%  Similarity=0.317  Sum_probs=154.6

Q ss_pred             eeecCccccEEEEEECC--CCCeEEEEeCCCcEEEeecCCCC--C-Cc--eeEEEeeCCcCCeeEEEEcCCC-CCEEEEE
Q 022716           14 REYTGHKKKVHSVAWNC--TGTKLASGSVDQTARVWHIEPHG--H-GK--VKDIELRGHADSVDQLCWDPKH-ADLIATA   85 (293)
Q Consensus        14 ~~~~~h~~~v~~l~~s~--~~~~l~s~~~dg~v~iw~~~~~~--~-~~--~~~~~~~~h~~~i~~~~~~~~~-~~~l~s~   85 (293)
                      .....|.+.|..+.|-+  -|+.+|+++.|++++||.-....  . +.  .....+......|+++.|.|.. +-.++++
T Consensus        53 s~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~  132 (361)
T KOG2445|consen   53 SSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAA  132 (361)
T ss_pred             eeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEe
Confidence            34568999999999965  48899999999999999742111  1 11  1233455667889999999964 3358999


Q ss_pred             eCCCeEEEEeCCCCee------eeeee--------ecCceEEEEEcCCC---CEEEEEeCC-----CeEEEEEcccccee
Q 022716           86 SGDKTVRLWDARSGKC------SQQAE--------LSGENINITYKPDG---THIAVGNRD-----DELTILDVRKFKPI  143 (293)
Q Consensus        86 ~~d~~i~vwd~~~~~~------~~~~~--------~~~~~~~~~~~~~~---~~l~~~~~d-----~~i~l~d~~~~~~~  143 (293)
                      +.||.+|||+.-..--      ...++        .+....|+.|.|..   .++++|+.+     +.+.||........
T Consensus       133 ~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rK  212 (361)
T KOG2445|consen  133 SADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRK  212 (361)
T ss_pred             ccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcce
Confidence            9999999998643321      11111        22234467777632   356666543     26777764332210


Q ss_pred             eeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCC----CCEEEEecCCCcEEEEeCCCC-----------------
Q 022716          144 HRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPM----GRYFAVGSADSLVSLWDISEM-----------------  202 (293)
Q Consensus       144 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~gs~d~~i~iwd~~~~-----------------  202 (293)
                                   |..-   -.+..+..++..|+|.|+    ...||+++.|| |+||+++..                 
T Consensus       213 -------------w~kv---a~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~  275 (361)
T KOG2445|consen  213 -------------WLKV---AELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTD  275 (361)
T ss_pred             -------------eeee---hhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccc
Confidence                         0000   001234556777777775    34689999999 999998621                 


Q ss_pred             ---EEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCC---CCEEEEEecCCCcceeEECC
Q 022716          203 ---LCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHT---GRTVHQIPCRAAMNSVEWNP  263 (293)
Q Consensus       203 ---~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~---~~~~~~~~~~~~i~~~~~sp  263 (293)
                         +.+..+..|...|..++|+-.|..|++.+.||.|++|...-   .++.-.+.....+....|++
T Consensus       276 l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n~~kC~sv~~~e~~~~~~~~~~  342 (361)
T KOG2445|consen  276 LPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNNLWKCTSVLKAEGSVTKPDFSQ  342 (361)
T ss_pred             cceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhhhheeeeEEeccCCCCCccccc
Confidence               23445667889999999999999999999999999997643   23444555555666666654

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.72  E-value=7e-16  Score=120.17  Aligned_cols=244  Identities=17%  Similarity=0.290  Sum_probs=162.8

Q ss_pred             ceeecCccccEEEEEECCCCCeE-EEEeCC-------CcEEEeecCCCCCC-ceeEE----Eee-CCcCCeeEEEEcCCC
Q 022716           13 SREYTGHKKKVHSVAWNCTGTKL-ASGSVD-------QTARVWHIEPHGHG-KVKDI----ELR-GHADSVDQLCWDPKH   78 (293)
Q Consensus        13 ~~~~~~h~~~v~~l~~s~~~~~l-~s~~~d-------g~v~iw~~~~~~~~-~~~~~----~~~-~h~~~i~~~~~~~~~   78 (293)
                      .+.|..|.+.|..++-+|-...+ +|.-.|       -.+-||.+...-.+ ....+    .+. .+-+.|.++.|.|+ 
T Consensus        56 skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pn-  134 (370)
T KOG1007|consen   56 SKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPN-  134 (370)
T ss_pred             hhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCC-
Confidence            35566788999999999977655 443221       24668988643211 11111    111 24458999999995 


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCeee-eeee------ecCceEEEEEcC--CCCEEEEEeCCCeEEEEEccccceeeeeccc
Q 022716           79 ADLIATASGDKTVRLWDARSGKCS-QQAE------LSGENINITYKP--DGTHIAVGNRDDELTILDVRKFKPIHRRKFG  149 (293)
Q Consensus        79 ~~~l~s~~~d~~i~vwd~~~~~~~-~~~~------~~~~~~~~~~~~--~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~  149 (293)
                      +..+++. .|..|.+|++..+..+ ....      ...+..+-+|+|  +|..+++. .|+++..||+|+.+....+.  
T Consensus       135 s~klasm-~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~--  210 (370)
T KOG1007|consen  135 SDKLASM-DDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIE--  210 (370)
T ss_pred             CCeeEEe-ccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchh--
Confidence            5667654 4889999999877542 2211      122344567887  77777765 58999999999765433221  


Q ss_pred             ceeeeeEEecCCCEEEEecCCCCEEEEEECCCCC-EEEEecCCCcEEEEeCCC-CEEEEEeeccCCCeeEEEEccCC-CE
Q 022716          150 YEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGR-YFAVGSADSLVSLWDISE-MLCVRTFTKLEWPVRTISFSHTG-DY  226 (293)
Q Consensus       150 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~gs~d~~i~iwd~~~-~~~~~~~~~~~~~v~~l~~sp~~-~~  226 (293)
                                       ..+...+..+.|+|+.. +|+++++||.|+|||+++ ..++.++.+|.-+|.++.|+|.- ++
T Consensus       211 -----------------dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqL  273 (370)
T KOG1007|consen  211 -----------------DAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQL  273 (370)
T ss_pred             -----------------hhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceE
Confidence                             11222345677778764 589999999999999975 45678899999999999999974 67


Q ss_pred             EEEecCCCcEEEEEcCCCC---------------------E--------EEEE-ecCCCcceeEECCCCC-eEEEEEcCC
Q 022716          227 IASASEDLFIDISNVHTGR---------------------T--------VHQI-PCRAAMNSVEWNPKYN-LLAYAGDDK  275 (293)
Q Consensus       227 l~s~s~d~~i~iw~~~~~~---------------------~--------~~~~-~~~~~i~~~~~sp~~~-~la~~~~d~  275 (293)
                      +.+||.|..|.+|....-.                     .        +..+ .+..+|-+++||.-.. .||+=+.|+
T Consensus       274 iLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDG  353 (370)
T KOG1007|consen  274 ILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDG  353 (370)
T ss_pred             EEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCc
Confidence            7999999999998542110                     0        0111 2345788999987554 678888886


Q ss_pred             CCC
Q 022716          276 NKY  278 (293)
Q Consensus       276 ~~~  278 (293)
                      -+.
T Consensus       354 Rvi  356 (370)
T KOG1007|consen  354 RVI  356 (370)
T ss_pred             eEE
Confidence            444

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.72  E-value=7.9e-15  Score=127.91  Aligned_cols=223  Identities=16%  Similarity=0.233  Sum_probs=144.2

Q ss_pred             ceeecCccccEEEEEECCCCCeEEEEeC---CCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCC
Q 022716           13 SREYTGHKKKVHSVAWNCTGTKLASGSV---DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDK   89 (293)
Q Consensus        13 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~---dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~   89 (293)
                      .+.++.+...+.+.+|||||+.|+..+.   +..+.+|++....   ..  .+......+....|+|++..++++.+.++
T Consensus       191 ~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~---~~--~l~~~~~~~~~~~~SPDG~~La~~~~~~g  265 (429)
T PRK03629        191 QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA---VR--QVASFPRHNGAPAFSPDGSKLAFALSKTG  265 (429)
T ss_pred             CEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCC---eE--EccCCCCCcCCeEECCCCCEEEEEEcCCC
Confidence            3445666778999999999999986543   4578888886431   11  12222233456789998766665555555


Q ss_pred             --eEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCC-CeEEEE--EccccceeeeecccceeeeeEEecCCCEE
Q 022716           90 --TVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRD-DELTIL--DVRKFKPIHRRKFGYEVNEIAWNMTGEMF  164 (293)
Q Consensus        90 --~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-~~i~l~--d~~~~~~~~~~~~~~~~~~v~~~~~~~~~  164 (293)
                        .|.+||+++++...............|+|||+.++..+.+ +...+|  |+.+....+          +.        
T Consensus       266 ~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~----------lt--------  327 (429)
T PRK03629        266 SLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQR----------IT--------  327 (429)
T ss_pred             CcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEE----------ee--------
Confidence              5888999887765544444456678999999988877653 444444  554432211          11        


Q ss_pred             EEecCCCCEEEEEECCCCCEEEEecCC---CcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCc---EEE
Q 022716          165 FLTTGNAGCYCIAIDPMGRYFAVGSAD---SLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLF---IDI  238 (293)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~l~~gs~d---~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~---i~i  238 (293)
                         ..........++|+|++++..+.+   ..|.+||+.++.. ..+... .......|+|||++|+.++.++.   +++
T Consensus       328 ---~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~-~~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~  402 (429)
T PRK03629        328 ---WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNL  402 (429)
T ss_pred             ---cCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCe-EEeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEE
Confidence               111123356788999888776543   3588899887753 334322 23456789999999999887764   667


Q ss_pred             EEcCCCCEEEEEe-cCCCcceeEECCC
Q 022716          239 SNVHTGRTVHQIP-CRAAMNSVEWNPK  264 (293)
Q Consensus       239 w~~~~~~~~~~~~-~~~~i~~~~~sp~  264 (293)
                      ++. +|+....+. +...+...+|+|-
T Consensus       403 ~~~-~G~~~~~l~~~~~~~~~p~Wsp~  428 (429)
T PRK03629        403 VST-DGRFKARLPATDGQVKFPAWSPY  428 (429)
T ss_pred             EEC-CCCCeEECccCCCCcCCcccCCC
Confidence            777 455455554 3456888999983

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.72  E-value=4.7e-17  Score=128.65  Aligned_cols=223  Identities=22%  Similarity=0.273  Sum_probs=149.9

Q ss_pred             ccccceeecCccccEEEEEECCCC-CeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeC
Q 022716            9 KNLHSREYTGHKKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASG   87 (293)
Q Consensus         9 ~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~   87 (293)
                      .......|-||...|..+.|.|+. +++++||.|..||+|++.+..+ ....--+.+|.+.|.++.|++++ +.++|+|.
T Consensus       124 ~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~C-v~VfGG~egHrdeVLSvD~~~~g-d~i~ScGm  201 (385)
T KOG1034|consen  124 SGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVC-VAVFGGVEGHRDEVLSVDFSLDG-DRIASCGM  201 (385)
T ss_pred             hhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeE-EEEecccccccCcEEEEEEcCCC-CeeeccCC
Confidence            344556788999999999999987 4668999999999999975321 11111356899999999999975 58999999


Q ss_pred             CCeEEEEeCCCCeeeeeeeec-----------------------------CceEEEEEcCCCCEEEEEeCCCeEEEEEcc
Q 022716           88 DKTVRLWDARSGKCSQQAELS-----------------------------GENINITYKPDGTHIAVGNRDDELTILDVR  138 (293)
Q Consensus        88 d~~i~vwd~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~  138 (293)
                      |.++++|++...+....++..                             ..+-+++|  -|.++++-+.++.|..|-..
T Consensus       202 Dhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw--~gd~ilSkscenaI~~w~pg  279 (385)
T KOG1034|consen  202 DHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRW--FGDFILSKSCENAIVCWKPG  279 (385)
T ss_pred             cceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHH--HhhheeecccCceEEEEecc
Confidence            999999998744322111110                             00111222  24678888899999999873


Q ss_pred             c-cceeeeecccceeeeeEEecCCCEEEEecCCCCEE--EEEECCCCCEEEEecCCCcEEEEeCCCCEEEE--Eee--cc
Q 022716          139 K-FKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCY--CIAIDPMGRYFAVGSADSLVSLWDISEMLCVR--TFT--KL  211 (293)
Q Consensus       139 ~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~--~~~--~~  211 (293)
                      . .+..+..+.+.....+.       ..+.-.+..+.  -.+++|-++.||.|...|.|.+||++..+...  ++.  .-
T Consensus       280 kl~e~~~~vkp~es~~Ti~-------~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~  352 (385)
T KOG1034|consen  280 KLEESIHNVKPPESATTIL-------GEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKS  352 (385)
T ss_pred             hhhhhhhccCCCccceeee-------eEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccc
Confidence            2 22222221111111100       00111112222  34677889999999999999999998765432  222  22


Q ss_pred             CCCeeEEEEccCCCEEEEecCCCcEEEEEcC
Q 022716          212 EWPVRTISFSHTGDYIASASEDLFIDISNVH  242 (293)
Q Consensus       212 ~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~  242 (293)
                      ...|+..+||.||..|+...+|++|--||..
T Consensus       353 ~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  353 GSTVRQTSFSRDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             cceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence            3579999999999999999999999999853

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.72  E-value=2.6e-14  Score=120.99  Aligned_cols=220  Identities=15%  Similarity=0.218  Sum_probs=138.3

Q ss_pred             EEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCC-CCee--eeeeeecCce
Q 022716           35 LASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDAR-SGKC--SQQAELSGEN  111 (293)
Q Consensus        35 l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~-~~~~--~~~~~~~~~~  111 (293)
                      .++...|+.|.+|++...  +....+....+.+....+.++|++..+++++..++.|.+|+++ ++..  .......+.+
T Consensus         5 y~~~~~~~~I~~~~~~~~--g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p   82 (330)
T PRK11028          5 YIASPESQQIHVWNLNHE--GALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSP   82 (330)
T ss_pred             EEEcCCCCCEEEEEECCC--CceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCc
Confidence            345577999999999643  2222222222334566788999754344444558899999986 3332  2222334456


Q ss_pred             EEEEEcCCCCEEEEEeC-CCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEE-Eec
Q 022716          112 INITYKPDGTHIAVGNR-DDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFA-VGS  189 (293)
Q Consensus       112 ~~~~~~~~~~~l~~~~~-d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~gs  189 (293)
                      ..++++|++++++++.. ++.+.+|++........     .+.            ...+...+..++++|+++++. +..
T Consensus        83 ~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~-----~~~------------~~~~~~~~~~~~~~p~g~~l~v~~~  145 (330)
T PRK11028         83 THISTDHQGRFLFSASYNANCVSVSPLDKDGIPVA-----PIQ------------IIEGLEGCHSANIDPDNRTLWVPCL  145 (330)
T ss_pred             eEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCC-----cee------------eccCCCcccEeEeCCCCCEEEEeeC
Confidence            78999999998888764 78999999864221110     000            001112345678899998875 455


Q ss_pred             CCCcEEEEeCCCCEEEEE-----ee-ccCCCeeEEEEccCCCEEEEecC-CCcEEEEEcCC--CCE--EEEEecC-----
Q 022716          190 ADSLVSLWDISEMLCVRT-----FT-KLEWPVRTISFSHTGDYIASASE-DLFIDISNVHT--GRT--VHQIPCR-----  253 (293)
Q Consensus       190 ~d~~i~iwd~~~~~~~~~-----~~-~~~~~v~~l~~sp~~~~l~s~s~-d~~i~iw~~~~--~~~--~~~~~~~-----  253 (293)
                      .++.|.+||+.+...+..     .. ........+.|+|+|++++++.. ++.|.+|++..  ++.  +..+...     
T Consensus       146 ~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~  225 (330)
T PRK11028        146 KEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFS  225 (330)
T ss_pred             CCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCC
Confidence            679999999976322211     11 12235678999999999987775 89999999974  332  2222210     


Q ss_pred             C--CcceeEECCCCCeEEEEEc
Q 022716          254 A--AMNSVEWNPKYNLLAYAGD  273 (293)
Q Consensus       254 ~--~i~~~~~sp~~~~la~~~~  273 (293)
                      .  ....+.++|+++++.++..
T Consensus       226 ~~~~~~~i~~~pdg~~lyv~~~  247 (330)
T PRK11028        226 DTRWAADIHITPDGRHLYACDR  247 (330)
T ss_pred             CCccceeEEECCCCCEEEEecC
Confidence            0  1225889999999888754

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.72  E-value=2.3e-16  Score=127.94  Aligned_cols=207  Identities=20%  Similarity=0.306  Sum_probs=148.8

Q ss_pred             cccEEEEEECCCCC-eEEEEeCCCcEEEeecCCCCCCc-----eeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEE
Q 022716           20 KKKVHSVAWNCTGT-KLASGSVDQTARVWHIEPHGHGK-----VKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL   93 (293)
Q Consensus        20 ~~~v~~l~~s~~~~-~l~s~~~dg~v~iw~~~~~~~~~-----~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~v   93 (293)
                      ..+|..+.|.+.+. .|+||+.|..||+|.+.......     .....+..|...|+.+.|+|+ +++|+||+.+|.+.+
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~-gelLASg~D~g~v~l   91 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPD-GELLASGGDGGEVFL   91 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCC-cCeeeecCCCceEEE
Confidence            36899999998876 99999999999999886432222     122346789999999999997 479999999999999


Q ss_pred             EeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCE
Q 022716           94 WDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGC  173 (293)
Q Consensus        94 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  173 (293)
                      |....-..             .  +...   ....+..  .|-                         ....+..+...+
T Consensus        92 Wk~~~~~~-------------~--~~d~---e~~~~ke--~w~-------------------------v~k~lr~h~~di  126 (434)
T KOG1009|consen   92 WKQGDVRI-------------F--DADT---EADLNKE--KWV-------------------------VKKVLRGHRDDI  126 (434)
T ss_pred             EEecCcCC-------------c--cccc---hhhhCcc--ceE-------------------------EEEEecccccch
Confidence            97543100             0  0000   0000000  000                         001122355667


Q ss_pred             EEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEE---
Q 022716          174 YCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQI---  250 (293)
Q Consensus       174 ~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~---  250 (293)
                      +.++|+|++.++++|+.|+.+++||+..+..+..+..|...+..++|.|-++++++-|.|...+..+...-+.++..   
T Consensus       127 ydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~  206 (434)
T KOG1009|consen  127 YDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLD  206 (434)
T ss_pred             hhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeee
Confidence            88999999999999999999999999999999999999999999999999999999999987666665443322111   


Q ss_pred             -----------------ecCCC----cceeEECCCCCeEEEEE
Q 022716          251 -----------------PCRAA----MNSVEWNPKYNLLAYAG  272 (293)
Q Consensus       251 -----------------~~~~~----i~~~~~sp~~~~la~~~  272 (293)
                                       -+...    .+.++|+|+|.++++.+
T Consensus       207 ~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPa  249 (434)
T KOG1009|consen  207 IMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPA  249 (434)
T ss_pred             EeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEccc
Confidence                             11111    25789999999988876

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.71  E-value=1.7e-14  Score=110.00  Aligned_cols=224  Identities=13%  Similarity=0.194  Sum_probs=155.4

Q ss_pred             EEEEEECCCCCeEEEEeCCCcEEEeecCCCC------CCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeC
Q 022716           23 VHSVAWNCTGTKLASGSVDQTARVWHIEPHG------HGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDA   96 (293)
Q Consensus        23 v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~------~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~   96 (293)
                      |-.=+++|.+++|+.|..+|+|-+..+.+-.      .++..-...++|..+|+.++|+.   ++|++|+ ||.|+=|.-
T Consensus        13 vf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d---~~Lls~g-dG~V~gw~W   88 (325)
T KOG0649|consen   13 VFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD---DFLLSGG-DGLVYGWEW   88 (325)
T ss_pred             HHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh---hheeecc-CceEEEeee
Confidence            4455789999999999999999999875321      12223344579999999999973   4666665 599998864


Q ss_pred             CCCe----eeee------eeec----CceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCC
Q 022716           97 RSGK----CSQQ------AELS----GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGE  162 (293)
Q Consensus        97 ~~~~----~~~~------~~~~----~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~  162 (293)
                      +...    +...      ++..    ..+..|-..|....++.++.|+.+..||+++++..+..+               
T Consensus        89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~r---------------  153 (325)
T KOG0649|consen   89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYR---------------  153 (325)
T ss_pred             hhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEc---------------
Confidence            3211    1111      1111    123357778887778888899999999999877554432               


Q ss_pred             EEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCC----------CeeEEEEccCCCEEEEecC
Q 022716          163 MFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEW----------PVRTISFSHTGDYIASASE  232 (293)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~----------~v~~l~~sp~~~~l~s~s~  232 (293)
                           .|.+.+-+++.-.....+++|++||++++||++++++++.+...+.          +|-+++  -+..+|++|+.
T Consensus       154 -----GHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala--~~edWlvCGgG  226 (325)
T KOG0649|consen  154 -----GHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALA--VNEDWLVCGGG  226 (325)
T ss_pred             -----CCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEe--ccCceEEecCC
Confidence                 3344455666545566789999999999999999988877654322          345554  45568877654


Q ss_pred             CCcEEEEEcCCCCEEEEEecCCCcceeEECCCCCeEEEEEcCC
Q 022716          233 DLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDK  275 (293)
Q Consensus       233 d~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~d~  275 (293)
                       -.+.+|.+...+....++-..++.-+.|-.  ..+.++|..+
T Consensus       227 -p~lslwhLrsse~t~vfpipa~v~~v~F~~--d~vl~~G~g~  266 (325)
T KOG0649|consen  227 -PKLSLWHLRSSESTCVFPIPARVHLVDFVD--DCVLIGGEGN  266 (325)
T ss_pred             -CceeEEeccCCCceEEEecccceeEeeeec--ceEEEecccc
Confidence             458999999988888888888888888844  4555555443

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.71  E-value=1.5e-14  Score=126.71  Aligned_cols=224  Identities=13%  Similarity=0.183  Sum_probs=147.7

Q ss_pred             cceeecCccccEEEEEECCCCCeEEEEeC---CCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCC
Q 022716           12 HSREYTGHKKKVHSVAWNCTGTKLASGSV---DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD   88 (293)
Q Consensus        12 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~---dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d   88 (293)
                      ..+.++.|...+.+.+|+|||+.|+..+.   +..|.+||+...   ...  .+..+...+....|+|++..++++.+.+
T Consensus       193 ~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g---~~~--~l~~~~g~~~~~~~SPDG~~la~~~~~~  267 (435)
T PRK05137        193 NVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETG---QRE--LVGNFPGMTFAPRFSPDGRKVVMSLSQG  267 (435)
T ss_pred             CcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCC---cEE--EeecCCCcccCcEECCCCCEEEEEEecC
Confidence            34567788889999999999999988764   468999998643   211  2344556677889999876666777776


Q ss_pred             Ce--EEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeC-CC--eEEEEEccccceeeeecccceeeeeEEecCCCE
Q 022716           89 KT--VRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNR-DD--ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEM  163 (293)
Q Consensus        89 ~~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~--~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~  163 (293)
                      +.  |.+||+.++.........+......|+|||+.++..+. ++  .+.++|+......+.                  
T Consensus       268 g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~l------------------  329 (435)
T PRK05137        268 GNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRI------------------  329 (435)
T ss_pred             CCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEe------------------
Confidence            65  66778887765443333344556899999999887763 33  577777655332211                  


Q ss_pred             EEEecCCCCEEEEEECCCCCEEEEecCC---CcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCC------C
Q 022716          164 FFLTTGNAGCYCIAIDPMGRYFAVGSAD---SLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASED------L  234 (293)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~l~~gs~d---~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d------~  234 (293)
                         ..+........|+|+|+.++..+.+   ..|.+||+..+.. ..+. ....+....|+|||+.|+..+.+      .
T Consensus       330 ---t~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~  404 (435)
T PRK05137        330 ---SFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAP  404 (435)
T ss_pred             ---ecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcc
Confidence               1111223346688888888776543   3688888765432 3332 23356788999999988765542      2


Q ss_pred             cEEEEEcCCCCEEEEEecCCCcceeEECCC
Q 022716          235 FIDISNVHTGRTVHQIPCRAAMNSVEWNPK  264 (293)
Q Consensus       235 ~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~  264 (293)
                      .+++.++..+.. ..+.....+...+|+|-
T Consensus       405 ~L~~~dl~g~~~-~~l~~~~~~~~p~Wsp~  433 (435)
T PRK05137        405 KLYTVDLTGRNE-REVPTPGDASDPAWSPL  433 (435)
T ss_pred             eEEEEECCCCce-EEccCCCCccCcccCCC
Confidence            577888765543 44444445677889884

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.71  E-value=4.6e-15  Score=117.13  Aligned_cols=228  Identities=17%  Similarity=0.247  Sum_probs=166.3

Q ss_pred             ccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeC-C
Q 022716           19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDA-R   97 (293)
Q Consensus        19 h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~-~   97 (293)
                      -..+|+|-+|++|..++|.+-....|.||.......-. ..-.+..|...|+.+.|.|.. +.|++|+.|....+|.. .
T Consensus         9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~-~~htls~Hd~~vtgvdWap~s-nrIvtcs~drnayVw~~~~   86 (361)
T KOG1523|consen    9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWE-PAHTLSEHDKIVTGVDWAPKS-NRIVTCSHDRNAYVWTQPS   86 (361)
T ss_pred             ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCce-eceehhhhCcceeEEeecCCC-CceeEccCCCCccccccCC
Confidence            35799999999999999999999999999876433111 223567899999999999974 57899999999999998 4


Q ss_pred             CCeeee---eeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEE
Q 022716           98 SGKCSQ---QAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCY  174 (293)
Q Consensus        98 ~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  174 (293)
                      .++...   ...+.....++.|+|.++.+++|+....+.+|=++..+.--..++                .-....+.+.
T Consensus        87 ~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKh----------------ikkPirStv~  150 (361)
T KOG1523|consen   87 GGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKH----------------IKKPIRSTVT  150 (361)
T ss_pred             CCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhh----------------hCCcccccee
Confidence            444332   345677788999999999999999999888886654322110000                0001234568


Q ss_pred             EEEECCCCCEEEEecCCCcEEEEeCC-----C-------------CEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcE
Q 022716          175 CIAIDPMGRYFAVGSADSLVSLWDIS-----E-------------MLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFI  236 (293)
Q Consensus       175 ~~~~~~~~~~l~~gs~d~~i~iwd~~-----~-------------~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i  236 (293)
                      +++++|++-+++.|+.|+..++|..-     .             ++.+.++..-...+..+.|+|+|..|+-.+.|..+
T Consensus       151 sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v  230 (361)
T KOG1523|consen  151 SLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTV  230 (361)
T ss_pred             eeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCce
Confidence            89999999999999999999999741     0             11122222334679999999999999999999999


Q ss_pred             EEEEcCCCCE-EEE-EecCCCcceeEECCC
Q 022716          237 DISNVHTGRT-VHQ-IPCRAAMNSVEWNPK  264 (293)
Q Consensus       237 ~iw~~~~~~~-~~~-~~~~~~i~~~~~sp~  264 (293)
                      .+-|.....+ +.. ....-|..++.|-.+
T Consensus       231 ~~~da~~p~~~v~~~~~~~lP~ls~~~ise  260 (361)
T KOG1523|consen  231 SFVDAAGPSERVQSVATAQLPLLSVSWISE  260 (361)
T ss_pred             EEeecCCCchhccchhhccCCceeeEeecC
Confidence            9999876542 221 222356777777543

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.71  E-value=9.9e-15  Score=127.72  Aligned_cols=222  Identities=17%  Similarity=0.198  Sum_probs=145.3

Q ss_pred             ceeecCccccEEEEEECCCCCeEEEEeCC---CcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCC
Q 022716           13 SREYTGHKKKVHSVAWNCTGTKLASGSVD---QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDK   89 (293)
Q Consensus        13 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~d---g~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~   89 (293)
                      .+.++.|...+.+.+|+|||+.|+..+.+   ..|.+|++....   ..  .+..+........|+|++..++++.+.++
T Consensus       196 ~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~---~~--~l~~~~g~~~~~~~SpDG~~l~~~~s~~g  270 (433)
T PRK04922        196 PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQ---RE--LVASFRGINGAPSFSPDGRRLALTLSRDG  270 (433)
T ss_pred             ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCC---EE--EeccCCCCccCceECCCCCEEEEEEeCCC
Confidence            45566777889999999999999987743   468899986432   11  22233334457789998766666766665


Q ss_pred             --eEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeC-CCe--EEEEEccccceeeeecccceeeeeEEecCCCEE
Q 022716           90 --TVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNR-DDE--LTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMF  164 (293)
Q Consensus        90 --~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~~--i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~  164 (293)
                        .|.+||+.+++..............+|+|||++++..+. ++.  +.++|+.+.+..+.                   
T Consensus       271 ~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~l-------------------  331 (433)
T PRK04922        271 NPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERL-------------------  331 (433)
T ss_pred             CceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-------------------
Confidence              589999988775543333334456899999999887764 444  55556544332111                   


Q ss_pred             EEecCCCCEEEEEECCCCCEEEEecCCC---cEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCC---CcEEE
Q 022716          165 FLTTGNAGCYCIAIDPMGRYFAVGSADS---LVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASED---LFIDI  238 (293)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~l~~gs~d~---~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d---~~i~i  238 (293)
                        ..........+++|+|++++..+.++   .|.+||+.++... .+.. ........|+|||++++..+.+   ..+++
T Consensus       332 --t~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~-~~~~~~p~~spdG~~i~~~s~~~g~~~L~~  407 (433)
T PRK04922        332 --TFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTP-GSLDESPSFAPNGSMVLYATREGGRGVLAA  407 (433)
T ss_pred             --ecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCC-CCCCCCceECCCCCEEEEEEecCCceEEEE
Confidence              01111223568899999887765433   5999999877543 3432 2244567899999988776653   45778


Q ss_pred             EEcCCCCEEEEEec-CCCcceeEECC
Q 022716          239 SNVHTGRTVHQIPC-RAAMNSVEWNP  263 (293)
Q Consensus       239 w~~~~~~~~~~~~~-~~~i~~~~~sp  263 (293)
                      ++.. +.....+.. ...+...+|+|
T Consensus       408 ~~~~-g~~~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        408 VSTD-GRVRQRLVSADGEVREPAWSP  432 (433)
T ss_pred             EECC-CCceEEcccCCCCCCCCccCC
Confidence            8874 444455543 35677889988

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.71  E-value=3.8e-14  Score=111.96  Aligned_cols=236  Identities=17%  Similarity=0.273  Sum_probs=155.6

Q ss_pred             cEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEE-EeCC------CeEEEE
Q 022716           22 KVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIAT-ASGD------KTVRLW   94 (293)
Q Consensus        22 ~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s-~~~d------~~i~vw   94 (293)
                      ...+++|+-|...++.|..+| .|||+.++-......    .-+...+.-+...-. .++|+- ||..      ..+.||
T Consensus         7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r----~~~~~G~~~veMLfR-~N~laLVGGg~~pky~pNkviIW   80 (346)
T KOG2111|consen    7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASR----QFIDGGFKIVEMLFR-SNYLALVGGGSRPKYPPNKVIIW   80 (346)
T ss_pred             ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhh----ccccCchhhhhHhhh-hceEEEecCCCCCCCCCceEEEE
Confidence            445699998888888887666 699998763221111    111111110110001 233322 3322      458999


Q ss_pred             eCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEcc-ccceeeeecccceeeeeEEecCCCEEEEecCCCCE
Q 022716           95 DARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVR-KFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGC  173 (293)
Q Consensus        95 d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  173 (293)
                      |-...+++..+.+..++..+.+.++  .+++. .+++|.+|... +.+.++....       .-+|.|           .
T Consensus        81 DD~k~~~i~el~f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et-------~~NPkG-----------l  139 (346)
T KOG2111|consen   81 DDLKERCIIELSFNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIET-------RSNPKG-----------L  139 (346)
T ss_pred             ecccCcEEEEEEeccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeec-------ccCCCc-----------e
Confidence            9777788888889999999998876  44444 46899999876 3333332211       112222           1


Q ss_pred             EEEEECCCCCEEEE-ecCCCcEEEEeCCCCEE--EEEeeccCCCeeEEEEccCCCEEEEecCCCc-EEEEEcCCCCEEEE
Q 022716          174 YCIAIDPMGRYFAV-GSADSLVSLWDISEMLC--VRTFTKLEWPVRTISFSHTGDYIASASEDLF-IDISNVHTGRTVHQ  249 (293)
Q Consensus       174 ~~~~~~~~~~~l~~-gs~d~~i~iwd~~~~~~--~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~-i~iw~~~~~~~~~~  249 (293)
                      -+++-+.+...||. |-.-|.|.|-|+...+.  ...+..|+.+|.+++.+-+|..+||+|..|+ |+|||..+|.++..
T Consensus       140 C~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E  219 (346)
T KOG2111|consen  140 CSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQE  219 (346)
T ss_pred             EeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeee
Confidence            11111112223333 34468899999876544  4678899999999999999999999999998 79999999998876


Q ss_pred             Ee---cCCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeeec
Q 022716          250 IP---CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN  292 (293)
Q Consensus       250 ~~---~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~~  292 (293)
                      +.   .+..|-+++|||+..+||.+|+        +|++.|++++-
T Consensus       220 ~RRG~d~A~iy~iaFSp~~s~LavsSd--------KgTlHiF~l~~  257 (346)
T KOG2111|consen  220 LRRGVDRADIYCIAFSPNSSWLAVSSD--------KGTLHIFSLRD  257 (346)
T ss_pred             eecCCchheEEEEEeCCCccEEEEEcC--------CCeEEEEEeec
Confidence            63   3456889999999999999984        58899988863

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.70  E-value=7.3e-15  Score=113.92  Aligned_cols=115  Identities=26%  Similarity=0.375  Sum_probs=89.7

Q ss_pred             CCEEEEEECCCCCEEEE--ecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCC---CcEEEEEcCCCC
Q 022716          171 AGCYCIAIDPMGRYFAV--GSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASED---LFIDISNVHTGR  245 (293)
Q Consensus       171 ~~~~~~~~~~~~~~l~~--gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d---~~i~iw~~~~~~  245 (293)
                      +++.+++|+|+++.+|+  |..++.|.+||++ ++.+..+.  ..+++.+.|||+|++|++|+.+   |.+.+||..+.+
T Consensus        60 ~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~  136 (194)
T PF08662_consen   60 GPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKK  136 (194)
T ss_pred             CceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCE
Confidence            45788888999887644  4567899999996 55565553  4678999999999999998744   669999999888


Q ss_pred             EEEEEecCCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeee
Q 022716          246 TVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE  291 (293)
Q Consensus       246 ~~~~~~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~  291 (293)
                      .+....+. .++.++|+|+|.+|+++...  -+...+..++||++.
T Consensus       137 ~i~~~~~~-~~t~~~WsPdGr~~~ta~t~--~r~~~dng~~Iw~~~  179 (194)
T PF08662_consen  137 KISTFEHS-DATDVEWSPDGRYLATATTS--PRLRVDNGFKIWSFQ  179 (194)
T ss_pred             EeeccccC-cEEEEEEcCCCCEEEEEEec--cceeccccEEEEEec
Confidence            87776543 47899999999999999864  233345667999874

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.70  E-value=1.4e-14  Score=132.04  Aligned_cols=254  Identities=17%  Similarity=0.204  Sum_probs=168.4

Q ss_pred             cccceeecCccccEEEEEECCCC-CeEEEEeCCCcEEEeecCCCCCC-ce--eEEEeeCCcCCeeEEEEcCCCCCEEEEE
Q 022716           10 NLHSREYTGHKKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHG-KV--KDIELRGHADSVDQLCWDPKHADLIATA   85 (293)
Q Consensus        10 ~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~v~iw~~~~~~~~-~~--~~~~~~~h~~~i~~~~~~~~~~~~l~s~   85 (293)
                      +..+.++..|...|..++.+++. .+++|||.||+||+|+...-... ..  ....+..-...+..+...+. ++.++.+
T Consensus      1038 G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~-~~~~Av~ 1116 (1431)
T KOG1240|consen 1038 GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGN-GDQFAVS 1116 (1431)
T ss_pred             ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccC-CCeEEEE
Confidence            34556778899888899888665 99999999999999998642211 11  11222223456777777664 5678888


Q ss_pred             eCCCeEEEEeCCCCee-------eee--eeecCceEEEE-EcC-CCC-EEEEEeCCCeEEEEEccccceeeeecccceee
Q 022716           86 SGDKTVRLWDARSGKC-------SQQ--AELSGENINIT-YKP-DGT-HIAVGNRDDELTILDVRKFKPIHRRKFGYEVN  153 (293)
Q Consensus        86 ~~d~~i~vwd~~~~~~-------~~~--~~~~~~~~~~~-~~~-~~~-~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~  153 (293)
                      +.||.|++.+++....       ...  ....+.++.|. +.. .+. .++.++.-+.+..||++........+..    
T Consensus      1117 t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~---- 1192 (1431)
T KOG1240|consen 1117 TKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ---- 1192 (1431)
T ss_pred             cCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcC----
Confidence            9999999999876211       111  12233444442 322 233 6777788889999999875543332221    


Q ss_pred             eeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEee-ccCCCeeEEEEccCC---CEEEE
Q 022716          154 EIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT-KLEWPVRTISFSHTG---DYIAS  229 (293)
Q Consensus       154 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~-~~~~~v~~l~~sp~~---~~l~s  229 (293)
                                    ...+.+++++++|.+.++++|+..|.+.+||++-+..+.+.. .+..+++.+..+|-.   ...++
T Consensus      1193 --------------~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs 1258 (1431)
T KOG1240|consen 1193 --------------LRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVS 1258 (1431)
T ss_pred             --------------ccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEE
Confidence                          124567899999999999999999999999999887777653 344688888877643   45544


Q ss_pred             ec--CCCcEEEEEcCCCCEEEEEecCCCc--------------------ceeEECCCCCeEEEEEcCCCCCCCCc
Q 022716          230 AS--EDLFIDISNVHTGRTVHQIPCRAAM--------------------NSVEWNPKYNLLAYAGDDKNKYQADE  282 (293)
Q Consensus       230 ~s--~d~~i~iw~~~~~~~~~~~~~~~~i--------------------~~~~~sp~~~~la~~~~d~~~~~~~~  282 (293)
                      ++  ..+.|.+|+..+|.....+-...+.                    ....+.-.+..+.+||.|..++-||.
T Consensus      1259 ~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~ 1333 (1431)
T KOG1240|consen 1259 AGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDP 1333 (1431)
T ss_pred             ecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccC
Confidence            44  5788999999998654443222111                    12333334567788888876665554

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.69  E-value=3.2e-16  Score=133.85  Aligned_cols=204  Identities=23%  Similarity=0.348  Sum_probs=142.3

Q ss_pred             cccEEEEEECC-CCCeEEEEeCCCcEEEeecCCCCCCc---eeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEe
Q 022716           20 KKKVHSVAWNC-TGTKLASGSVDQTARVWHIEPHGHGK---VKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWD   95 (293)
Q Consensus        20 ~~~v~~l~~s~-~~~~l~s~~~dg~v~iw~~~~~~~~~---~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd   95 (293)
                      ...|+.+.|+| |..+||.|+.||.|++|.+..++...   .....+.+|...|+++.|+|--.++|++++.|.+|++||
T Consensus       627 gt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWD  706 (1012)
T KOG1445|consen  627 GTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWD  706 (1012)
T ss_pred             CceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeee
Confidence            46799999998 56789999999999999987554322   123457889999999999998888999999999999999


Q ss_pred             CCCCeeeeee-eecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccc-eeeeecc--cceeeeeEEecCCCEEEEecCCC
Q 022716           96 ARSGKCSQQA-ELSGENINITYKPDGTHIAVGNRDDELTILDVRKFK-PIHRRKF--GYEVNEIAWNMTGEMFFLTTGNA  171 (293)
Q Consensus        96 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~-~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~  171 (293)
                      +.+......+ .+.+.+..++|+|+|+.+++.+.||+++++..++.. ++++.+-  +..-..+.|              
T Consensus       707 l~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~w--------------  772 (1012)
T KOG1445|consen  707 LANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILW--------------  772 (1012)
T ss_pred             hhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEE--------------
Confidence            9988654444 356678899999999999999999999999988653 3333221  111122333              


Q ss_pred             CEEEEEECCCCCEEEEecCC----CcEEEEeCCCC--EEEEEeeccCCC-eeEEEEccCC-CEEEEecCCCcEEEEEcCC
Q 022716          172 GCYCIAIDPMGRYFAVGSAD----SLVSLWDISEM--LCVRTFTKLEWP-VRTISFSHTG-DYIASASEDLFIDISNVHT  243 (293)
Q Consensus       172 ~~~~~~~~~~~~~l~~gs~d----~~i~iwd~~~~--~~~~~~~~~~~~-v~~l~~sp~~-~~l~s~s~d~~i~iw~~~~  243 (293)
                             --+|+++++.+.|    ..|.+||.++.  ..+.+..-...+ +.-=.|.+|. ..+++|-.|.+|++|.+..
T Consensus       773 -------acdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~  845 (1012)
T KOG1445|consen  773 -------ACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIY  845 (1012)
T ss_pred             -------EecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEEecC
Confidence                   2356665555443    56888887542  223222111111 1111234454 4678899999999998754


Q ss_pred             C
Q 022716          244 G  244 (293)
Q Consensus       244 ~  244 (293)
                      .
T Consensus       846 e  846 (1012)
T KOG1445|consen  846 E  846 (1012)
T ss_pred             C
Confidence            3

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.69  E-value=6.1e-15  Score=129.16  Aligned_cols=228  Identities=17%  Similarity=0.200  Sum_probs=154.0

Q ss_pred             CcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeee--e-----eeeecCceEEE
Q 022716           42 QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCS--Q-----QAELSGENINI  114 (293)
Q Consensus        42 g~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~--~-----~~~~~~~~~~~  114 (293)
                      +.+.+|++.....+.   ..+. -...|.++.|+|....+++.|..+|+|.+||++.+...  .     ...+...+..+
T Consensus       222 ~~~~vW~~~~p~~Pe---~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~v  297 (555)
T KOG1587|consen  222 GVLLVWSLKNPNTPE---LVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAV  297 (555)
T ss_pred             ceEEEEecCCCCCce---EEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEE
Confidence            478899997653222   2222 35679999999999999999999999999999876541  1     12234456667


Q ss_pred             EEcCCC--CEEEEEeCCCeEEEEEccccce-eeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCC-CEEEEecC
Q 022716          115 TYKPDG--THIAVGNRDDELTILDVRKFKP-IHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMG-RYFAVGSA  190 (293)
Q Consensus       115 ~~~~~~--~~l~~~~~d~~i~l~d~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~gs~  190 (293)
                      .|..+-  ..+++++.||.|..|+++.... ...........      .+.   -......+++++|.+.. +.+++|+.
T Consensus       298 vW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~------~~~---~~~~~~~~t~~~F~~~~p~~FiVGTe  368 (555)
T KOG1587|consen  298 VWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKH------KGQ---QSSKAVGATSLKFEPTDPNHFIVGTE  368 (555)
T ss_pred             EEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccc------ccc---ccccccceeeEeeccCCCceEEEEcC
Confidence            776433  4599999999999998876443 11111110000      000   01123356788888764 67999999


Q ss_pred             CCcEEEEe---CCCCE-----EEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcC-CCCEEEEEecCC-CcceeE
Q 022716          191 DSLVSLWD---ISEML-----CVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVH-TGRTVHQIPCRA-AMNSVE  260 (293)
Q Consensus       191 d~~i~iwd---~~~~~-----~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~-~~~~~~~~~~~~-~i~~~~  260 (293)
                      +|.|.--+   ++...     .+..+..|..+|.++.++|-+..+...+.|-+++||.-. .-..+..+.... .+.+++
T Consensus       369 ~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~va  448 (555)
T KOG1587|consen  369 EGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVA  448 (555)
T ss_pred             CcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeE
Confidence            99987733   22222     122455678899999999998776655559999999976 344444444333 489999


Q ss_pred             ECCCC-CeEEEEEcCCCCCCCCc
Q 022716          261 WNPKY-NLLAYAGDDKNKYQADE  282 (293)
Q Consensus       261 ~sp~~-~~la~~~~d~~~~~~~~  282 (293)
                      |||.- ..||++..|+++.+||-
T Consensus       449 WSptrpavF~~~d~~G~l~iWDL  471 (555)
T KOG1587|consen  449 WSPTRPAVFATVDGDGNLDIWDL  471 (555)
T ss_pred             EcCcCceEEEEEcCCCceehhhh
Confidence            99955 78888888988887764

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.69  E-value=1.7e-15  Score=120.12  Aligned_cols=257  Identities=14%  Similarity=0.277  Sum_probs=174.0

Q ss_pred             cccEEEEEECCCCCeEEE-EeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCC
Q 022716           20 KKKVHSVAWNCTGTKLAS-GSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS   98 (293)
Q Consensus        20 ~~~v~~l~~s~~~~~l~s-~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~   98 (293)
                      -..|.-+.|..|..+++. +..|+.|.+|++...+    ...+...-.+++.+++|+|++..+|.+...|..|.+|.+.+
T Consensus        48 ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpe----w~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t  123 (447)
T KOG4497|consen   48 LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPE----WYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNT  123 (447)
T ss_pred             HHHhhheeeeccceeeeeeeeccceEEEEEeecce----eEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEecc
Confidence            357888899988877664 5668899999986432    22233344677899999999888999999999999999988


Q ss_pred             CeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEcccc---ceeeeecc-cceeeeeEEecCCCEEEEecC-----
Q 022716           99 GKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKF---KPIHRRKF-GYEVNEIAWNMTGEMFFLTTG-----  169 (293)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~---~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~-----  169 (293)
                      ..+.....-+.....++|+|||++.+..+.-.....+.+-..   ..++.... ..+...+.|+|+|..+.+...     
T Consensus       124 ~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leyk  203 (447)
T KOG4497|consen  124 QKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYK  203 (447)
T ss_pred             ceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhhe
Confidence            766544333444567899999999888875322111111111   11111111 234566889999887664332     


Q ss_pred             ------CCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEE--------------------------------------
Q 022716          170 ------NAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCV--------------------------------------  205 (293)
Q Consensus       170 ------~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~--------------------------------------  205 (293)
                            .-++..++++|.++++++|+.|+.+++-+--+....                                      
T Consensus       204 v~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~  283 (447)
T KOG4497|consen  204 VYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTD  283 (447)
T ss_pred             eeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCc
Confidence                  245778999999999999999999888552211110                                      


Q ss_pred             ----------------------EEee------ccCCCeeEEEEccCCCEEEEecCC--CcEEEEEcCCCCEEEEEecCCC
Q 022716          206 ----------------------RTFT------KLEWPVRTISFSHTGDYIASASED--LFIDISNVHTGRTVHQIPCRAA  255 (293)
Q Consensus       206 ----------------------~~~~------~~~~~v~~l~~sp~~~~l~s~s~d--~~i~iw~~~~~~~~~~~~~~~~  255 (293)
                                            ..++      .....+.-++||+|..++||-.+.  +.+-+||++..+....+-.+.+
T Consensus       284 ~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~p  363 (447)
T KOG4497|consen  284 LEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHP  363 (447)
T ss_pred             cccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhccc
Confidence                                  0000      001124558999999999997654  5688999987665445556778


Q ss_pred             cceeEECCCCCeEEEEEcCCCCCCC
Q 022716          256 MNSVEWNPKYNLLAYAGDDKNKYQA  280 (293)
Q Consensus       256 i~~~~~sp~~~~la~~~~d~~~~~~  280 (293)
                      |+...|+|....|+.+....-+|.|
T Consensus       364 iraf~WdP~~prL~vctg~srLY~W  388 (447)
T KOG4497|consen  364 IRAFEWDPGRPRLVVCTGKSRLYFW  388 (447)
T ss_pred             eeEEEeCCCCceEEEEcCCceEEEE
Confidence            9999999999888887655444443

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.68  E-value=5.8e-16  Score=129.84  Aligned_cols=177  Identities=14%  Similarity=0.270  Sum_probs=137.3

Q ss_pred             ceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEE
Q 022716           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (293)
Q Consensus        13 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~   92 (293)
                      .+....|.+.|.|-.|+|||.-|+|++.||.|++|.-..    -. ...+.....+|++++|.|+..+.+++.+..  +.
T Consensus        97 E~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsG----ML-RStl~Q~~~~v~c~~W~p~S~~vl~c~g~h--~~  169 (737)
T KOG1524|consen   97 ERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSG----ML-RSTVVQNEESIRCARWAPNSNSIVFCQGGH--IS  169 (737)
T ss_pred             hhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccc----hH-HHHHhhcCceeEEEEECCCCCceEEecCCe--EE
Confidence            355779999999999999999999999999999997532    11 112334467899999999888888876644  44


Q ss_pred             EEeCCCCee-eeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecC--
Q 022716           93 LWDARSGKC-SQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG--  169 (293)
Q Consensus        93 vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--  169 (293)
                      +=.+..... ++--.+.+.+.++.|++....+++|++|-+.++||...........+..++.+++|+|+ +.+.+.+.  
T Consensus       170 IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~nt  248 (737)
T KOG1524|consen  170 IKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPE-KDYLLWSYNT  248 (737)
T ss_pred             EeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcccccCChhccceeeeeeccc-cceeeeeeee
Confidence            444544433 33334567788999999999999999999999999876665555667889999999999 55554443  


Q ss_pred             -------CCCEEEEEECCCCCEEEEecCCCcEEEE
Q 022716          170 -------NAGCYCIAIDPMGRYFAVGSADSLVSLW  197 (293)
Q Consensus       170 -------~~~~~~~~~~~~~~~l~~gs~d~~i~iw  197 (293)
                             .+.+..++|++||..+++|+..|.+.+-
T Consensus       249 ~R~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A  283 (737)
T KOG1524|consen  249 ARFSSPRVGSIFNLSWSADGTQATCGTSTGQLIVA  283 (737)
T ss_pred             eeecCCCccceEEEEEcCCCceeeccccCceEEEe
Confidence                   3578999999999999999999987654

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.67  E-value=2.9e-15  Score=119.18  Aligned_cols=186  Identities=17%  Similarity=0.313  Sum_probs=132.9

Q ss_pred             CEEEEEeCCCeEEEEeCCCCeeeeeeeecC-ceEEEEEcC--CCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeE
Q 022716           80 DLIATASGDKTVRLWDARSGKCSQQAELSG-ENINITYKP--DGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIA  156 (293)
Q Consensus        80 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~--~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~  156 (293)
                      ..++.+-..|.|++||..+++.+..+.... ....++|..  ....+.+++.||+|++||+|......++.+..      
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~------  114 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQ------  114 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccC------
Confidence            456777779999999999887766655432 333566654  45689999999999999999866444332211      


Q ss_pred             EecCCCEEEEecCCCCEEEEEECCCCCEEEEecC----CCcEEEEeCCCCEE-EEE-eeccCCCeeEEEEccCC-CEEEE
Q 022716          157 WNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSA----DSLVSLWDISEMLC-VRT-FTKLEWPVRTISFSHTG-DYIAS  229 (293)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~----d~~i~iwd~~~~~~-~~~-~~~~~~~v~~l~~sp~~-~~l~s  229 (293)
                         ..        ..+..|++..-.++.+++|+.    +-.|.+||.+.... +.. ...|...|++|+|+|+. ..|+|
T Consensus       115 ---~~--------~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlS  183 (376)
T KOG1188|consen  115 ---QS--------GTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLS  183 (376)
T ss_pred             ---CC--------CCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEe
Confidence               10        123456666667778888764    56799999987654 443 34688999999999975 68899


Q ss_pred             ecCCCcEEEEEcCCCC----EEEEEecCCCcceeEECCCC--CeEEEEEcCCCCCCCCcceEEEEeee
Q 022716          230 ASEDLFIDISNVHTGR----TVHQIPCRAAMNSVEWNPKY--NLLAYAGDDKNKYQADEGVFRIYGFE  291 (293)
Q Consensus       230 ~s~d~~i~iw~~~~~~----~~~~~~~~~~i~~~~~sp~~--~~la~~~~d~~~~~~~~~~~~~~~~~  291 (293)
                      ||-||.|.++|+....    +++.+.+..+|..+.|+.++  +++..+-+         +.+.+|.+|
T Consensus       184 GSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~---------Etf~~~ele  242 (376)
T KOG1188|consen  184 GSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHM---------ETFAIYELE  242 (376)
T ss_pred             ecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEcc---------CceeEEEcc
Confidence            9999999999997542    23456677789999998877  55555543         457777765

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.67  E-value=5.5e-15  Score=127.11  Aligned_cols=227  Identities=15%  Similarity=0.223  Sum_probs=160.1

Q ss_pred             cEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCee
Q 022716           22 KVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKC  101 (293)
Q Consensus        22 ~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~  101 (293)
                      .|+.++|-|||.+|+.+. +..+.+||.....    ....+++|++-|++++|+.+ +..++||+.|+.|.+|+.+-.. 
T Consensus        14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~----llqtLKgHKDtVycVAys~d-GkrFASG~aDK~VI~W~~klEG-   86 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGT----LLQPLKGHKDTVYCVAYAKD-GKRFASGSADKSVIIWTSKLEG-   86 (1081)
T ss_pred             chheeEECCCCceEEEec-CCEEEEEeCCCcc----cccccccccceEEEEEEccC-CceeccCCCceeEEEecccccc-
Confidence            899999999999987765 4678899987532    23368899999999999976 5789999999999999865432 


Q ss_pred             eeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCC
Q 022716          102 SQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPM  181 (293)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (293)
                      ...+.+...+.+|.|.|-...|++++- +..-+|....+...+. +                     ....+.+.+|..|
T Consensus        87 ~LkYSH~D~IQCMsFNP~~h~LasCsL-sdFglWS~~qK~V~K~-k---------------------ss~R~~~CsWtnD  143 (1081)
T KOG1538|consen   87 ILKYSHNDAIQCMSFNPITHQLASCSL-SDFGLWSPEQKSVSKH-K---------------------SSSRIICCSWTND  143 (1081)
T ss_pred             eeeeccCCeeeEeecCchHHHhhhcch-hhccccChhhhhHHhh-h---------------------hheeEEEeeecCC
Confidence            223445667779999999888988874 3456777654332211 0                     1234567788899


Q ss_pred             CCEEEEecCCCcEEEEeCCCCEE--EEEeeccCCCeeEEEEccCCC-----EEEEecCCCcEEEEEcCCCCEEEE-EecC
Q 022716          182 GRYFAVGSADSLVSLWDISEMLC--VRTFTKLEWPVRTISFSHTGD-----YIASASEDLFIDISNVHTGRTVHQ-IPCR  253 (293)
Q Consensus       182 ~~~l~~gs~d~~i~iwd~~~~~~--~~~~~~~~~~v~~l~~sp~~~-----~l~s~s~d~~i~iw~~~~~~~~~~-~~~~  253 (293)
                      |.+++.|-.+|+|.|=+-..-+.  +..--+...+|.+++|+|...     .++...-..++.++.+ +|+.+.+ ....
T Consensus       144 GqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~L-sG~~Igk~r~L~  222 (1081)
T KOG1538|consen  144 GQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQL-SGKQIGKDRALN  222 (1081)
T ss_pred             CcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEe-cceeecccccCC
Confidence            99999999999999986432222  222223567999999999753     4555555566666655 3444431 1111


Q ss_pred             CCcceeEECCCCCeEEEEEcCCCCCC
Q 022716          254 AAMNSVEWNPKYNLLAYAGDDKNKYQ  279 (293)
Q Consensus       254 ~~i~~~~~sp~~~~la~~~~d~~~~~  279 (293)
                      =.-.++.+-|+|.++..||.|+.+.+
T Consensus       223 FdP~CisYf~NGEy~LiGGsdk~L~~  248 (1081)
T KOG1538|consen  223 FDPCCISYFTNGEYILLGGSDKQLSL  248 (1081)
T ss_pred             CCchhheeccCCcEEEEccCCCceEE
Confidence            23458899999999999999985443

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.67  E-value=5.1e-14  Score=124.42  Aligned_cols=248  Identities=19%  Similarity=0.273  Sum_probs=163.5

Q ss_pred             EEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCC--CEEEEEeCCCeEEEEeCCCCee
Q 022716           24 HSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHA--DLIATASGDKTVRLWDARSGKC  101 (293)
Q Consensus        24 ~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~--~~l~s~~~d~~i~vwd~~~~~~  101 (293)
                      ..-.||+|++.++... +..|+||......+    ...+.+|..++..+.+.|...  ..+++++.||.|++||...+..
T Consensus        20 ~~avfSnD~k~l~~~~-~~~V~VyS~~Tg~~----i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~L   94 (792)
T KOG1963|consen   20 SPAVFSNDAKFLFLCT-GNFVKVYSTATGEC----ITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGEL   94 (792)
T ss_pred             cccccccCCcEEEEee-CCEEEEEecchHhh----hhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEE
Confidence            3456888988776444 68899998875322    125789999999999988765  4677999999999999999999


Q ss_pred             eeeeeecCceEEEEEcCC----CCEEEEEeCCCeE------------EEEEccccceee-e-ecccceeeeeEEecCCCE
Q 022716          102 SQQAELSGENINITYKPD----GTHIAVGNRDDEL------------TILDVRKFKPIH-R-RKFGYEVNEIAWNMTGEM  163 (293)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~----~~~l~~~~~d~~i------------~l~d~~~~~~~~-~-~~~~~~~~~v~~~~~~~~  163 (293)
                      ...+....++..+.+.|.    ...+..+..|-.+            +-+.+.+..... . .+....-+.++.++.++.
T Consensus        95 lkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~  174 (792)
T KOG1963|consen   95 LKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEF  174 (792)
T ss_pred             EEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceE
Confidence            888887777766555331    1112122222111            111111100000 0 000000122233333222


Q ss_pred             EEE------------------ec------CCCCEEEEEECCCCCEEEEecCCCcEEEEeCCC----CEEEEEeeccCCCe
Q 022716          164 FFL------------------TT------GNAGCYCIAIDPMGRYFAVGSADSLVSLWDISE----MLCVRTFTKLEWPV  215 (293)
Q Consensus       164 ~~~------------------~~------~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~----~~~~~~~~~~~~~v  215 (293)
                      ..+                  ..      |...++|.+++|+++++|+|..||.|.+|.--.    ......+.=|...|
T Consensus       175 ~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V  254 (792)
T KOG1963|consen  175 KGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEV  254 (792)
T ss_pred             EEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEeccccc
Confidence            111                  11      122368899999999999999999999995321    12233455577899


Q ss_pred             eEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEe-cCCCcceeEECCCCCeEEEEEcCCCC
Q 022716          216 RTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNK  277 (293)
Q Consensus       216 ~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~-~~~~i~~~~~sp~~~~la~~~~d~~~  277 (293)
                      .+++|+++|.+|.+|+..+.+-+|...+++ ...++ ..++|..+.+|||+++.+..-.|..+
T Consensus       255 ~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI  316 (792)
T KOG1963|consen  255 NSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQI  316 (792)
T ss_pred             ceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceE
Confidence            999999999999999999999999999988 22333 46789999999999988887777544

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.67  E-value=2.1e-14  Score=121.49  Aligned_cols=248  Identities=17%  Similarity=0.208  Sum_probs=175.5

Q ss_pred             CccccEEEEEECCCCCeE-EEEeCCCcEEEeecCCCCC--------Ccee------------------EEEeeC----C-
Q 022716           18 GHKKKVHSVAWNCTGTKL-ASGSVDQTARVWHIEPHGH--------GKVK------------------DIELRG----H-   65 (293)
Q Consensus        18 ~h~~~v~~l~~s~~~~~l-~s~~~dg~v~iw~~~~~~~--------~~~~------------------~~~~~~----h-   65 (293)
                      +|...-+.+..+|||+++ |||-.--.|++||+..-..        ..+.                  .+.+.+    | 
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy  128 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY  128 (703)
T ss_pred             CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence            677888899999999985 6888899999999863210        0000                  011111    1 


Q ss_pred             ----cCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeeeec-CceEEEEEcCCCCEEEEEeCCCeEEEEEcccc
Q 022716           66 ----ADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKF  140 (293)
Q Consensus        66 ----~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~  140 (293)
                          .....+++++-...+++ .++....|.-.++..|+.+..+... +...++...+-..+|++|+.+|.+-.||.|..
T Consensus       129 ~~RIP~~GRDm~y~~~scDly-~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~k  207 (703)
T KOG2321|consen  129 RTRIPKFGRDMKYHKPSCDLY-LVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDK  207 (703)
T ss_pred             eeecCcCCccccccCCCccEE-EeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhh
Confidence                11233455554445555 4555566777799999988877766 45567888888889999999999999999987


Q ss_pred             ceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEE-eeccCCCeeEEE
Q 022716          141 KPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRT-FTKLEWPVRTIS  219 (293)
Q Consensus       141 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~-~~~~~~~v~~l~  219 (293)
                      ...........|...   |.      ......++++.|+.+|-.+++|+.+|.+.|||++...++.. -.....||..+.
T Consensus       208 srv~~l~~~~~v~s~---pg------~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~  278 (703)
T KOG2321|consen  208 SRVGTLDAASSVNSH---PG------GDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLD  278 (703)
T ss_pred             hhheeeecccccCCC---cc------ccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeec
Confidence            766554433322211   00      01123478999999999999999999999999988765532 233456899999


Q ss_pred             EccCCCEEEEecCC-CcEEEEEcCCCCEEEEEecCCCcceeEECCCCCeEEEEEcCC
Q 022716          220 FSHTGDYIASASED-LFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDK  275 (293)
Q Consensus       220 ~sp~~~~l~s~s~d-~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~d~  275 (293)
                      |.+.++.=...+.| ..++|||-.+|+....+.....++.+++-|+..++.+|-.+.
T Consensus       279 ~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~  335 (703)
T KOG2321|consen  279 WQDTDQQNKVVSMDKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESS  335 (703)
T ss_pred             ccccCCCceEEecchHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCC
Confidence            98874443333444 558999999999887777777899999999999999998764

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.66  E-value=2.9e-13  Score=118.11  Aligned_cols=206  Identities=15%  Similarity=0.173  Sum_probs=134.2

Q ss_pred             cEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEe--CCCeEEEEeCCCCeeeeeeeecCceEEEEEcCCC
Q 022716           43 TARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATAS--GDKTVRLWDARSGKCSQQAELSGENINITYKPDG  120 (293)
Q Consensus        43 ~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  120 (293)
                      .|.+||.+...  .   ..+..+...+....|+|++..++++..  .+..+.+||+.+++........+.....+|+|||
T Consensus       180 ~l~~~d~dg~~--~---~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG  254 (429)
T PRK03629        180 ELRVSDYDGYN--Q---FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDG  254 (429)
T ss_pred             eEEEEcCCCCC--C---EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCC
Confidence            67778776321  1   123345667889999998755444332  3457899999888655444445555678999999


Q ss_pred             CEEEEEe-CCC--eEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCC-Cc--E
Q 022716          121 THIAVGN-RDD--ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSAD-SL--V  194 (293)
Q Consensus       121 ~~l~~~~-~d~--~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d-~~--i  194 (293)
                      +.|+... .++  .|.+||+++....+..                     .+........|+|+++.|+..+.+ +.  |
T Consensus       255 ~~La~~~~~~g~~~I~~~d~~tg~~~~lt---------------------~~~~~~~~~~wSPDG~~I~f~s~~~g~~~I  313 (429)
T PRK03629        255 SKLAFALSKTGSLNLYVMDLASGQIRQVT---------------------DGRSNNTEPTWFPDSQNLAYTSDQAGRPQV  313 (429)
T ss_pred             CEEEEEEcCCCCcEEEEEECCCCCEEEcc---------------------CCCCCcCceEECCCCCEEEEEeCCCCCceE
Confidence            9888653 344  5888898765432211                     112233467888999888766654 44  4


Q ss_pred             EEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCC---CcEEEEEcCCCCEEEEEecCCCcceeEECCCCCeEEEE
Q 022716          195 SLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASED---LFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYA  271 (293)
Q Consensus       195 ~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d---~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~  271 (293)
                      .++|+..+.. ..+...........|+|||++++..+.+   ..|++||+.++.. ..+.......+..|+|||.+|+++
T Consensus       314 y~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~-~~Lt~~~~~~~p~~SpDG~~i~~~  391 (429)
T PRK03629        314 YKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLTDTFLDETPSIAPNGTMVIYS  391 (429)
T ss_pred             EEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCe-EEeCCCCCCCCceECCCCCEEEEE
Confidence            4446666543 3343333445678899999999776543   3588899988763 333322234578999999999999


Q ss_pred             EcCCC
Q 022716          272 GDDKN  276 (293)
Q Consensus       272 ~~d~~  276 (293)
                      +.++.
T Consensus       392 s~~~~  396 (429)
T PRK03629        392 SSQGM  396 (429)
T ss_pred             EcCCC
Confidence            98764

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.66  E-value=2.3e-15  Score=122.74  Aligned_cols=188  Identities=18%  Similarity=0.214  Sum_probs=130.0

Q ss_pred             eEEEEcCCCCCEEEEEeCCCeEEEEe-CCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecc
Q 022716           70 DQLCWDPKHADLIATASGDKTVRLWD-ARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF  148 (293)
Q Consensus        70 ~~~~~~~~~~~~l~s~~~d~~i~vwd-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~  148 (293)
                      ..+++++++ .++++++.||.+|+|+ ..........+++..+..+.|+|||+.|++.+.| ...+|+.++...+.....
T Consensus       148 k~vaf~~~g-s~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~  225 (398)
T KOG0771|consen  148 KVVAFNGDG-SKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP  225 (398)
T ss_pred             eEEEEcCCC-CEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence            457888764 6899999999999999 4444445555678888999999999999999999 899999988755444321


Q ss_pred             cceeeeeEEecCCCEEEEecCCCCEEEEEECCCC-----CEEEEecCCCcEEEEeCCCC-----EEEEEeeccCCCeeEE
Q 022716          149 GYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMG-----RYFAVGSADSLVSLWDISEM-----LCVRTFTKLEWPVRTI  218 (293)
Q Consensus       149 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~l~~gs~d~~i~iwd~~~~-----~~~~~~~~~~~~v~~l  218 (293)
                      ..          ++        -....+.|..++     +.++.-..-+.|+.||+..+     .+..+...-...|.++
T Consensus       226 ~~----------k~--------~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl  287 (398)
T KOG0771|consen  226 FS----------KD--------EMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSL  287 (398)
T ss_pred             cc----------cc--------hhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeE
Confidence            00          00        001112222222     22233333445666655322     1222222233579999


Q ss_pred             EEccCCCEEEEecCCCcEEEEEcCCCCEEEEEe--cCCCcceeEECCCCCeEEEEEcCCCC
Q 022716          219 SFSHTGDYIASASEDLFIDISNVHTGRTVHQIP--CRAAMNSVEWNPKYNLLAYAGDDKNK  277 (293)
Q Consensus       219 ~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~--~~~~i~~~~~sp~~~~la~~~~d~~~  277 (293)
                      +.+++|+++|.|+.||.|-|++..+-+.++-.+  |..-|+.|.|+|+.+++++.+.|..+
T Consensus       288 ~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~  348 (398)
T KOG0771|consen  288 AVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEA  348 (398)
T ss_pred             EEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCce
Confidence            999999999999999999999998877665443  44579999999999999998877533

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.66  E-value=2.3e-14  Score=111.95  Aligned_cols=241  Identities=22%  Similarity=0.324  Sum_probs=161.5

Q ss_pred             cEEEEEECC--C-CCeEEEEeC----CCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCC----CCEEEEEeCCCe
Q 022716           22 KVHSVAWNC--T-GTKLASGSV----DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKH----ADLIATASGDKT   90 (293)
Q Consensus        22 ~v~~l~~s~--~-~~~l~s~~~----dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~----~~~l~s~~~d~~   90 (293)
                      ++.++.|+.  + ..+||.|+.    .+.|.|-.++......... .-..|.-+++.+.|.|+.    .++|+|++  ..
T Consensus        46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~-a~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~  122 (364)
T KOG0290|consen   46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVED-ANFDHPYPVTKLMWIPDSKGVYPDLLATSS--DF  122 (364)
T ss_pred             ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceecc-CCCCCCCCccceEecCCccccCcchhhccc--Ce
Confidence            688889983  3 346888875    5788887776432222111 113688889999999864    35676544  67


Q ss_pred             EEEEeCCCCe--eee--------eeeecCceEEEEEcC-CCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEec
Q 022716           91 VRLWDARSGK--CSQ--------QAELSGENINITYKP-DGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNM  159 (293)
Q Consensus        91 i~vwd~~~~~--~~~--------~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~  159 (293)
                      +|+|.+...+  ...        ..++..+.++..|.. +-+++.+.+-|-++.+||++....-..              
T Consensus       123 LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~v--------------  188 (364)
T KOG0290|consen  123 LRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTV--------------  188 (364)
T ss_pred             EEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccce--------------
Confidence            9999886432  111        112233445666653 557888999999999999987522000              


Q ss_pred             CCCEEEEecCCCCEEEEEECCCC-CEEEEecCCCcEEEEeCCCCEE---EEEeeccCCCeeEEEEccC-CCEEEEecCCC
Q 022716          160 TGEMFFLTTGNAGCYCIAIDPMG-RYFAVGSADSLVSLWDISEMLC---VRTFTKLEWPVRTISFSHT-GDYIASASEDL  234 (293)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~-~~l~~gs~d~~i~iwd~~~~~~---~~~~~~~~~~v~~l~~sp~-~~~l~s~s~d~  234 (293)
                         ..-+..|+..++.++|...+ +.+|+.+.||.+++||++..+.   +++-.....+..-++|+++ -+++||-..|.
T Consensus       189 ---kTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS  265 (364)
T KOG0290|consen  189 ---KTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDS  265 (364)
T ss_pred             ---eeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCC
Confidence               01234566677778887754 5789999999999999987542   2222222457788888875 46889988774


Q ss_pred             -cEEEEEcCCCC-EEEEE-ecCCCcceeEECCCC-CeEEEEEcCCCCCCCCc
Q 022716          235 -FIDISNVHTGR-TVHQI-PCRAAMNSVEWNPKY-NLLAYAGDDKNKYQADE  282 (293)
Q Consensus       235 -~i~iw~~~~~~-~~~~~-~~~~~i~~~~~sp~~-~~la~~~~d~~~~~~~~  282 (293)
                       .|.|-|++... .+..+ .|+..|+.|+|.|.. ..|+++|+|-..-+||-
T Consensus       266 ~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl  317 (364)
T KOG0290|consen  266 NKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDL  317 (364)
T ss_pred             ceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEec
Confidence             48999988653 34444 467789999999965 89999999865554443

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.66  E-value=8.2e-16  Score=126.79  Aligned_cols=223  Identities=15%  Similarity=0.167  Sum_probs=171.7

Q ss_pred             cEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCee
Q 022716           22 KVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKC  101 (293)
Q Consensus        22 ~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~  101 (293)
                      .-..+.++.+|+.|+.|+..|.|-.+|..+..    ....+ .-...|.++.|... . .++.......+.|||- .|..
T Consensus       131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~----L~~Ei-~v~Etv~Dv~~LHn-e-q~~AVAQK~y~yvYD~-~GtE  202 (545)
T KOG1272|consen  131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKK----LHFEI-NVMETVRDVTFLHN-E-QFFAVAQKKYVYVYDN-NGTE  202 (545)
T ss_pred             CCeeeeecCCccEEEecCCccceeeeecccce----eeeee-ehhhhhhhhhhhcc-h-HHHHhhhhceEEEecC-CCcE
Confidence            45678889999999999999999999875421    11111 12355778888653 2 3455677888999984 4555


Q ss_pred             eeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCC
Q 022716          102 SQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPM  181 (293)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (293)
                      +..+.....+..+.|-|..-+|++++..|-++..|+..++.+.....                    +.+.+..+.-+|-
T Consensus       203 lHClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t--------------------~~G~~~vm~qNP~  262 (545)
T KOG1272|consen  203 LHCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRT--------------------GAGRTDVMKQNPY  262 (545)
T ss_pred             EeehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHc--------------------cCCccchhhcCCc
Confidence            55555567777889999888889999999999999887765543322                    2233344566788


Q ss_pred             CCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEecCCCcceeEE
Q 022716          182 GRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEW  261 (293)
Q Consensus       182 ~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~i~~~~~  261 (293)
                      +-.+-+|...|+|.+|.....+++-.+--|..+|.+|++.++|+|+||.+.|..++|||++....++.+...-+...+++
T Consensus       263 NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~  342 (545)
T KOG1272|consen  263 NAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSL  342 (545)
T ss_pred             cceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCcccccc
Confidence            88899999999999999988888877888999999999999999999999999999999999888777766567788999


Q ss_pred             CCCCCeEEEEE
Q 022716          262 NPKYNLLAYAG  272 (293)
Q Consensus       262 sp~~~~la~~~  272 (293)
                      |-.|.+.++-|
T Consensus       343 SqkglLA~~~G  353 (545)
T KOG1272|consen  343 SQKGLLALSYG  353 (545)
T ss_pred             ccccceeeecC
Confidence            98875544444

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.65  E-value=1.4e-13  Score=120.15  Aligned_cols=222  Identities=18%  Similarity=0.238  Sum_probs=141.6

Q ss_pred             eeecCccccEEEEEECCCCCeEEEEeCC---CcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCe
Q 022716           14 REYTGHKKKVHSVAWNCTGTKLASGSVD---QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKT   90 (293)
Q Consensus        14 ~~~~~h~~~v~~l~~s~~~~~l~s~~~d---g~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~   90 (293)
                      +.++.+...+.+.+|+|||+.|+..+.+   ..|.+||+....   ..  .+......+....|+|++..++++.+.++.
T Consensus       189 ~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~---~~--~l~~~~g~~~~~~~SPDG~~la~~~~~~g~  263 (427)
T PRK02889        189 QSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGR---RR--VVANFKGSNSAPAWSPDGRTLAVALSRDGN  263 (427)
T ss_pred             eEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCC---EE--EeecCCCCccceEECCCCCEEEEEEccCCC
Confidence            4456778889999999999999887753   358999987432   11  222233445678999987666667788888


Q ss_pred             EEEEe--CCCCeeeeeeeecCceEEEEEcCCCCEEEEEeC-CCeEEEEEcc--ccceeeeecccceeeeeEEecCCCEEE
Q 022716           91 VRLWD--ARSGKCSQQAELSGENINITYKPDGTHIAVGNR-DDELTILDVR--KFKPIHRRKFGYEVNEIAWNMTGEMFF  165 (293)
Q Consensus        91 i~vwd--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~~i~l~d~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~  165 (293)
                      ..+|.  +..+.........+......|+|||+.++..+. ++...+|.+.  +....+          +.         
T Consensus       264 ~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~----------lt---------  324 (427)
T PRK02889        264 SQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR----------VT---------  324 (427)
T ss_pred             ceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE----------Ee---------
Confidence            77765  444443222222333456789999998886654 4555666543  222111          10         


Q ss_pred             EecCCCCEEEEEECCCCCEEEEecCCC---cEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCC---cEEEE
Q 022716          166 LTTGNAGCYCIAIDPMGRYFAVGSADS---LVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDL---FIDIS  239 (293)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~l~~gs~d~---~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~---~i~iw  239 (293)
                        .........+|+|+|++++..+.++   .|.+||+..+... .+... .......|+|||++|+..+.++   .+++.
T Consensus       325 --~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~-~lt~~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~  400 (427)
T PRK02889        325 --FTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT-ALTDT-TRDESPSFAPNGRYILYATQQGGRSVLAAV  400 (427)
T ss_pred             --cCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE-EccCC-CCccCceECCCCCEEEEEEecCCCEEEEEE
Confidence              0111122467899999988776554   5999999877543 33322 2346789999999988877543   25555


Q ss_pred             EcCCCCEEEEEec-CCCcceeEECCC
Q 022716          240 NVHTGRTVHQIPC-RAAMNSVEWNPK  264 (293)
Q Consensus       240 ~~~~~~~~~~~~~-~~~i~~~~~sp~  264 (293)
                      +. +++....+.. .+.+...+|+|-
T Consensus       401 ~~-~g~~~~~l~~~~g~~~~p~wsp~  425 (427)
T PRK02889        401 SS-DGRIKQRLSVQGGDVREPSWGPF  425 (427)
T ss_pred             EC-CCCceEEeecCCCCCCCCccCCC
Confidence            55 4555555543 355778899984

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.65  E-value=5.7e-15  Score=124.51  Aligned_cols=199  Identities=25%  Similarity=0.349  Sum_probs=122.3

Q ss_pred             ceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCC------CCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEe
Q 022716           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHG------HGKVKDIELRGHADSVDQLCWDPKHADLIATAS   86 (293)
Q Consensus        13 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~------~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~   86 (293)
                      +.+|-+|.++|.|+...+.+..+.+|+-||+|+.|++..+.      .+....-.+.||.+.|+.+.+++. .+.|++++
T Consensus       337 i~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~-~~~Llscs  415 (577)
T KOG0642|consen  337 ILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSST-KDRLLSCS  415 (577)
T ss_pred             eEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccc-ccceeeec
Confidence            45678999999999999999999999999999999764321      112223457899999999999886 45688999


Q ss_pred             CCCeEEEEeCCCCee--eeeeeecCceEEEEEcCCC-CEEEEEeCCCeEEEEEccccceeeee--------cccceeeee
Q 022716           87 GDKTVRLWDARSGKC--SQQAELSGENINITYKPDG-THIAVGNRDDELTILDVRKFKPIHRR--------KFGYEVNEI  155 (293)
Q Consensus        87 ~d~~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~l~d~~~~~~~~~~--------~~~~~~~~v  155 (293)
                      .||+++.|+......  ...-.-++.+.++.+.... ...++...-+.-.+.++.....+...        .-...++.+
T Consensus       416 ~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~v  495 (577)
T KOG0642|consen  416 SDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKV  495 (577)
T ss_pred             CCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceE
Confidence            999999999765543  1111122333344432211 11111111111111111110000000        001234445


Q ss_pred             EEecCCCEEEE---------------------ecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccC
Q 022716          156 AWNMTGEMFFL---------------------TTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLE  212 (293)
Q Consensus       156 ~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~  212 (293)
                      +|++.....+.                     ..+...++++++.|+|.+|++|+.|+.+++|.+....++.....|.
T Consensus       496 Vs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r  573 (577)
T KOG0642|consen  496 VSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAHR  573 (577)
T ss_pred             EecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchheeecccccc
Confidence            55554433221                     1123457789999999999999999999999987776666655554

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.64  E-value=2.9e-13  Score=103.41  Aligned_cols=242  Identities=16%  Similarity=0.252  Sum_probs=156.0

Q ss_pred             cceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCC----CceeEEEeeCCc-----CCeeEEEEcCCCCCEE
Q 022716           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGH----GKVKDIELRGHA-----DSVDQLCWDPKHADLI   82 (293)
Q Consensus        12 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~----~~~~~~~~~~h~-----~~i~~~~~~~~~~~~l   82 (293)
                      ......+|..+|..++|.  ..+|++|+ ||.|+-|...+...    ........+.|.     ..|+++...|....+ 
T Consensus        54 ~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi-  129 (325)
T KOG0649|consen   54 KIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSI-  129 (325)
T ss_pred             ceeeccccCCCeeeeeee--hhheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcE-
Confidence            344457999999999998  45677776 59999987653221    122222223333     458899888875554 


Q ss_pred             EEEeCCCeEEEEeCCCCeeeeeeeecCc-eEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCC
Q 022716           83 ATASGDKTVRLWDARSGKCSQQAELSGE-NINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTG  161 (293)
Q Consensus        83 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~  161 (293)
                      +.++.|+.+.-||+++|+....+..+.. +.+++-......+++|++||++++||.++.+.+..+..-..-+.       
T Consensus       130 ~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~-------  202 (325)
T KOG0649|consen  130 LFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNL-------  202 (325)
T ss_pred             EEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhh-------
Confidence            5667999999999999998887775544 44555434456799999999999999999877665431100000       


Q ss_pred             CEEEEecC-CCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEE
Q 022716          162 EMFFLTTG-NAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISN  240 (293)
Q Consensus       162 ~~~~~~~~-~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~  240 (293)
                          +-.+ ...+.+++  -+..++++|+. ..+.+|+++..++...|. ...++..+.|-  ...++++++.+.+.-|.
T Consensus       203 ----lRp~~g~wigala--~~edWlvCGgG-p~lslwhLrsse~t~vfp-ipa~v~~v~F~--~d~vl~~G~g~~v~~~~  272 (325)
T KOG0649|consen  203 ----LRPDWGKWIGALA--VNEDWLVCGGG-PKLSLWHLRSSESTCVFP-IPARVHLVDFV--DDCVLIGGEGNHVQSYT  272 (325)
T ss_pred             ----cCcccCceeEEEe--ccCceEEecCC-CceeEEeccCCCceEEEe-cccceeEeeee--cceEEEeccccceeeee
Confidence                0001 11233444  45678888764 468999999988877663 45688889884  44788888888888887


Q ss_pred             cCCCCEEEEEecCC-CcceeEECCC-CCeEEEEEcCC
Q 022716          241 VHTGRTVHQIPCRA-AMNSVEWNPK-YNLLAYAGDDK  275 (293)
Q Consensus       241 ~~~~~~~~~~~~~~-~i~~~~~sp~-~~~la~~~~d~  275 (293)
                      .. |...-+.+... ...+..|+.. .++|..+|...
T Consensus       273 l~-Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~  308 (325)
T KOG0649|consen  273 LN-GVLQANIPVESTACYSASWQTSPIKFISIAGFSN  308 (325)
T ss_pred             ec-cEEEEeccCCccceeeecccCCceEEEEecccce
Confidence            63 22222333222 2344555432 45666666543

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.64  E-value=3.2e-14  Score=111.07  Aligned_cols=203  Identities=23%  Similarity=0.356  Sum_probs=142.0

Q ss_pred             CccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEE---eeCCcCCeeEEEEcC-CCCCEEEEEeCCCeEEE
Q 022716           18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIE---LRGHADSVDQLCWDP-KHADLIATASGDKTVRL   93 (293)
Q Consensus        18 ~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~---~~~h~~~i~~~~~~~-~~~~~l~s~~~d~~i~v   93 (293)
                      .|-+.|.|+.|.|++..|++-. |..|.+|++++...- ...+.   -..|....++-+|+| -+++.++ ...|+++..
T Consensus       121 eavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~-vaev~ss~s~e~~~~ftsg~WspHHdgnqv~-tt~d~tl~~  197 (370)
T KOG1007|consen  121 EAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKI-VAEVLSSESAEMRHSFTSGAWSPHHDGNQVA-TTSDSTLQF  197 (370)
T ss_pred             HHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcch-heeecccccccccceecccccCCCCccceEE-EeCCCcEEE
Confidence            4456999999999999988766 899999999854321 11111   112455667778988 3345554 467899999


Q ss_pred             EeCCCCeeeeeee-ec-CceEEEEEcCCCC-EEEEEeCCCeEEEEEccccc-eeeeecccceeeeeEEecCCCEEEEecC
Q 022716           94 WDARSGKCSQQAE-LS-GENINITYKPDGT-HIAVGNRDDELTILDVRKFK-PIHRRKFGYEVNEIAWNMTGEMFFLTTG  169 (293)
Q Consensus        94 wd~~~~~~~~~~~-~~-~~~~~~~~~~~~~-~l~~~~~d~~i~l~d~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~  169 (293)
                      ||+++-.+...++ .+ ..+..+.|.|+.. +|++++.|+.+++||.|+.+ |+..+                    ..+
T Consensus       198 ~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el--------------------~~H  257 (370)
T KOG1007|consen  198 WDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQEL--------------------PGH  257 (370)
T ss_pred             EEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcccccc--------------------CCC
Confidence            9999776554443 22 3467899999765 57888899999999998643 33322                    223


Q ss_pred             CCCEEEEEECCC-CCEEEEecCCCcEEEEeCCCC-----------------------------EEEEEeeccCCCeeEEE
Q 022716          170 NAGCYCIAIDPM-GRYFAVGSADSLVSLWDISEM-----------------------------LCVRTFTKLEWPVRTIS  219 (293)
Q Consensus       170 ~~~~~~~~~~~~-~~~l~~gs~d~~i~iwd~~~~-----------------------------~~~~~~~~~~~~v~~l~  219 (293)
                      ..-+.++.|+|. ..++++|+.|..|.+|....-                             ..+.++..|+..|.+++
T Consensus       258 sHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~a  337 (370)
T KOG1007|consen  258 SHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALA  337 (370)
T ss_pred             ceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEe
Confidence            344567777776 456778888888888864211                             12346677899999999


Q ss_pred             EccCCCE-EEEecCCCcEEEEEcCC
Q 022716          220 FSHTGDY-IASASEDLFIDISNVHT  243 (293)
Q Consensus       220 ~sp~~~~-l~s~s~d~~i~iw~~~~  243 (293)
                      ||.-..+ +|+-|.||.+.|-.+..
T Consensus       338 WSsadPWiFASLSYDGRviIs~V~r  362 (370)
T KOG1007|consen  338 WSSADPWIFASLSYDGRVIISSVPR  362 (370)
T ss_pred             eccCCCeeEEEeccCceEEeecCCh
Confidence            9987776 58889999999988754

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.64  E-value=7.9e-15  Score=123.08  Aligned_cols=199  Identities=19%  Similarity=0.292  Sum_probs=137.5

Q ss_pred             CCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeC--CcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeeee
Q 022716           30 CTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG--HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAEL  107 (293)
Q Consensus        30 ~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~--h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~  107 (293)
                      |.+-.|+.|=.-|.|.+.|.....  .........  .+..|+++.|-|-+..+++.+-.+|.+.++|..-       ..
T Consensus       183 ~~g~dllIGf~tGqvq~idp~~~~--~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~-------~~  253 (636)
T KOG2394|consen  183 PKGLDLLIGFTTGQVQLIDPINFE--VSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEI-------VC  253 (636)
T ss_pred             CCCcceEEeeccCceEEecchhhH--HHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccc-------cc
Confidence            456667788888888887764321  111111111  2367999999987777787788899999998621       01


Q ss_pred             cCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEE
Q 022716          108 SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAV  187 (293)
Q Consensus       108 ~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  187 (293)
                      .....+....+++..+.....-+.      .+..|+..           |         ....+.+...+|+|||++||+
T Consensus       254 ~~t~p~~~~~k~~~~f~i~t~ksk------~~rNPv~~-----------w---------~~~~g~in~f~FS~DG~~LA~  307 (636)
T KOG2394|consen  254 GATAPSYQALKDGDQFAILTSKSK------KTRNPVAR-----------W---------HIGEGSINEFAFSPDGKYLAT  307 (636)
T ss_pred             cCCCCcccccCCCCeeEEeeeecc------ccCCccce-----------e---------EeccccccceeEcCCCceEEE
Confidence            111112223345555544432111      01122111           1         112335667899999999999


Q ss_pred             ecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEE-EecCCCcceeEECC
Q 022716          188 GSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQ-IPCRAAMNSVEWNP  263 (293)
Q Consensus       188 gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~-~~~~~~i~~~~~sp  263 (293)
                      .+.||.++|||..+++.+..++.+-....+++|||||+|+++|++|-.|.||.+..++.+-. -.|++.|..|+|.|
T Consensus       308 VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  308 VSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             EecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence            99999999999999888777777778999999999999999999999999999999888754 35677899999985

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.63  E-value=1.1e-13  Score=124.72  Aligned_cols=234  Identities=18%  Similarity=0.258  Sum_probs=157.7

Q ss_pred             cCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCC---cCCeeEEEE-cCCCCCEEEEEeCCCeEE
Q 022716           17 TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGH---ADSVDQLCW-DPKHADLIATASGDKTVR   92 (293)
Q Consensus        17 ~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h---~~~i~~~~~-~~~~~~~l~s~~~d~~i~   92 (293)
                      ++...+-..+.|+|-..+++++...-.|++||.+....    ...+..+   ...|+.+.+ +..+..++++|+.||.||
T Consensus      1061 ~~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~----l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIR 1136 (1387)
T KOG1517|consen 1061 TGNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRL----LNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIR 1136 (1387)
T ss_pred             hcCCCCCceeeecCCCceeEEcCCcceEEEEecccCce----eccccCCCCCCCccceeeeecccchhheeeeccCceEE
Confidence            34445677888999999999999899999999875321    1112221   245777776 445567899999999999


Q ss_pred             EEeCCCC-----eeeeeee-ec-------CceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEec
Q 022716           93 LWDARSG-----KCSQQAE-LS-------GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNM  159 (293)
Q Consensus        93 vwd~~~~-----~~~~~~~-~~-------~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~  159 (293)
                      ||+--..     +.+..+. ..       +...-+.|....-+|++++.-..|++||...-...+....+.         
T Consensus      1137 Iwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s--------- 1207 (1387)
T KOG1517|consen 1137 IWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGS--------- 1207 (1387)
T ss_pred             EecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCC---------
Confidence            9974221     2222211 11       112235666655566666667899999987655444433221         


Q ss_pred             CCCEEEEecCCCCEEEEEEC-CCCCEEEEecCCCcEEEEeCCCC---EEEEEeeccCCC--eeEEEEccCCC-EEEEecC
Q 022716          160 TGEMFFLTTGNAGCYCIAID-PMGRYFAVGSADSLVSLWDISEM---LCVRTFTKLEWP--VRTISFSHTGD-YIASASE  232 (293)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~-~~~~~l~~gs~d~~i~iwd~~~~---~~~~~~~~~~~~--v~~l~~sp~~~-~l~s~s~  232 (293)
                                +..++++.-+ +.|+.+++|-.||.|++||.+.-   ..+...+.|...  |..+.+.+.|- .|++|+.
T Consensus      1208 ----------~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~ 1277 (1387)
T KOG1517|consen 1208 ----------STLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQ 1277 (1387)
T ss_pred             ----------CccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeecc
Confidence                      1122333222 34799999999999999997642   234556677665  99999998775 4999999


Q ss_pred             CCcEEEEEcCCCCEE--EEEe----cCCCcceeEECCCCCeEEEEEc
Q 022716          233 DLFIDISNVHTGRTV--HQIP----CRAAMNSVEWNPKYNLLAYAGD  273 (293)
Q Consensus       233 d~~i~iw~~~~~~~~--~~~~----~~~~i~~~~~sp~~~~la~~~~  273 (293)
                      ||.|++||++.....  ....    ..+.++++.-|++...+|+|+.
T Consensus      1278 ~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~ 1324 (1387)
T KOG1517|consen 1278 DGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA 1324 (1387)
T ss_pred             CCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc
Confidence            999999999874221  1121    2335899999999999999986

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.63  E-value=5.1e-13  Score=116.64  Aligned_cols=191  Identities=19%  Similarity=0.197  Sum_probs=123.0

Q ss_pred             eeCCcCCeeEEEEcCCCCCEEEEEeC--CCeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEE-EeCCCeEEEEEc-
Q 022716           62 LRGHADSVDQLCWDPKHADLIATASG--DKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAV-GNRDDELTILDV-  137 (293)
Q Consensus        62 ~~~h~~~i~~~~~~~~~~~~l~s~~~--d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~d~~i~l~d~-  137 (293)
                      +..+...+.+.+|+|++..++++...  ...|.+||+.+++........+.....+|+|||+.++. .+.++...+|.+ 
T Consensus       191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d  270 (427)
T PRK02889        191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVN  270 (427)
T ss_pred             eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEE
Confidence            34567788899999986544443322  24599999988876544445556667899999998875 556777666654 


Q ss_pred             -cccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecC-CCcEEEEeC--CCCEEEEEeeccCC
Q 022716          138 -RKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSA-DSLVSLWDI--SEMLCVRTFTKLEW  213 (293)
Q Consensus       138 -~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~-d~~i~iwd~--~~~~~~~~~~~~~~  213 (293)
                       ......+                     +..+........|+|+|+.++..+. ++...||.+  ..+.. ..+.....
T Consensus       271 ~~~~~~~~---------------------lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~~g~  328 (427)
T PRK02889        271 ADGSGLRR---------------------LTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-QRVTFTGS  328 (427)
T ss_pred             CCCCCcEE---------------------CCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-EEEecCCC
Confidence             3222111                     1111222345678999988776554 456666654  44432 22222222


Q ss_pred             CeeEEEEccCCCEEEEecCCC---cEEEEEcCCCCEEEEEecCCCcceeEECCCCCeEEEEEcCC
Q 022716          214 PVRTISFSHTGDYIASASEDL---FIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDK  275 (293)
Q Consensus       214 ~v~~l~~sp~~~~l~s~s~d~---~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~d~  275 (293)
                      .....+|+|+|++|+..+.++   .|++||+.+++.. .+..........|+|++.+|++++.++
T Consensus       329 ~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~-~lt~~~~~~~p~~spdg~~l~~~~~~~  392 (427)
T PRK02889        329 YNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT-ALTDTTRDESPSFAPNGRYILYATQQG  392 (427)
T ss_pred             CcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE-EccCCCCccCceECCCCCEEEEEEecC
Confidence            344678999999998776554   5999999887643 333333456889999999999998765

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.63  E-value=3.4e-13  Score=118.06  Aligned_cols=204  Identities=18%  Similarity=0.152  Sum_probs=132.6

Q ss_pred             CcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeC---CCeEEEEeCCCCeeeeeeeecCceEEEEEcC
Q 022716           42 QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASG---DKTVRLWDARSGKCSQQAELSGENINITYKP  118 (293)
Q Consensus        42 g~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  118 (293)
                      ..|.+||.+...   .  ..+..+...+....|+|++. .|+..+.   +..|.+||+.+++........+.....+|+|
T Consensus       184 ~~l~i~D~~g~~---~--~~lt~~~~~v~~p~wSpDg~-~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~Sp  257 (433)
T PRK04922        184 YALQVADSDGYN---P--QTILRSAEPILSPAWSPDGK-KLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSP  257 (433)
T ss_pred             EEEEEECCCCCC---c--eEeecCCCccccccCCCCCC-EEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECC
Confidence            368888875321   1  23445667788999999865 5555553   3469999998877654434445555789999


Q ss_pred             CCCEEEEE-eCCC--eEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecC-CCc-
Q 022716          119 DGTHIAVG-NRDD--ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSA-DSL-  193 (293)
Q Consensus       119 ~~~~l~~~-~~d~--~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~-d~~-  193 (293)
                      ||+.++.. +.++  .|.+||+.+.......                     .+.......+|+|+++.++..+. +|. 
T Consensus       258 DG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt---------------------~~~~~~~~~~~spDG~~l~f~sd~~g~~  316 (433)
T PRK04922        258 DGRRLALTLSRDGNPEIYVMDLGSRQLTRLT---------------------NHFGIDTEPTWAPDGKSIYFTSDRGGRP  316 (433)
T ss_pred             CCCEEEEEEeCCCCceEEEEECCCCCeEECc---------------------cCCCCccceEECCCCCEEEEEECCCCCc
Confidence            99987643 4444  5888888765432211                     11112235678899988876654 444 


Q ss_pred             -EEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCC---cEEEEEcCCCCEEEEEecCCCcceeEECCCCCeEE
Q 022716          194 -VSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDL---FIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLA  269 (293)
Q Consensus       194 -i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~---~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~la  269 (293)
                       |.++|+..+.. ..+..........+|+|+|++++..+.++   .|.+||..+++.. .+..........|+|+|++++
T Consensus       317 ~iy~~dl~~g~~-~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~~~~~~p~~spdG~~i~  394 (433)
T PRK04922        317 QIYRVAASGGSA-ERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPGSLDESPSFAPNGSMVL  394 (433)
T ss_pred             eEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCCCCCCCceECCCCCEEE
Confidence             66667766543 22322333445689999999998765432   5899999887654 443333456789999999999


Q ss_pred             EEEcC
Q 022716          270 YAGDD  274 (293)
Q Consensus       270 ~~~~d  274 (293)
                      +.+.+
T Consensus       395 ~~s~~  399 (433)
T PRK04922        395 YATRE  399 (433)
T ss_pred             EEEec
Confidence            88875

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.63  E-value=1.1e-12  Score=114.99  Aligned_cols=204  Identities=15%  Similarity=0.169  Sum_probs=133.5

Q ss_pred             cEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEe---CCCeEEEEeCCCCeeeeeeeecCceEEEEEcCC
Q 022716           43 TARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATAS---GDKTVRLWDARSGKCSQQAELSGENINITYKPD  119 (293)
Q Consensus        43 ~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~---~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  119 (293)
                      .|.++|.+..   .  ...+..|...+....|+|++.. |+..+   .+..|.+||+.+++........+.....+|+||
T Consensus       183 ~l~~~d~dg~---~--~~~lt~~~~~v~~p~wSpDG~~-lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPD  256 (435)
T PRK05137        183 RLAIMDQDGA---N--VRYLTDGSSLVLTPRFSPNRQE-ITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPD  256 (435)
T ss_pred             EEEEECCCCC---C--cEEEecCCCCeEeeEECCCCCE-EEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCC
Confidence            6667776432   1  1235567788999999998654 44443   256899999988876544445556667899999


Q ss_pred             CCEEEE-EeCCCe--EEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecC-CC--c
Q 022716          120 GTHIAV-GNRDDE--LTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSA-DS--L  193 (293)
Q Consensus       120 ~~~l~~-~~~d~~--i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~-d~--~  193 (293)
                      |+.++. .+.++.  |.++|+++....+..                     .+........|+|+++.++..+. ++  .
T Consensus       257 G~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt---------------------~~~~~~~~~~~spDG~~i~f~s~~~g~~~  315 (435)
T PRK05137        257 GRKVVMSLSQGGNTDIYTMDLRSGTTTRLT---------------------DSPAIDTSPSYSPDGSQIVFESDRSGSPQ  315 (435)
T ss_pred             CCEEEEEEecCCCceEEEEECCCCceEEcc---------------------CCCCccCceeEcCCCCEEEEEECCCCCCe
Confidence            998764 444554  666787665432211                     11122234678888888776654 33  5


Q ss_pred             EEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCC---CcEEEEEcCCCCEEEEEecCCCcceeEECCCCCeEEE
Q 022716          194 VSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASED---LFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAY  270 (293)
Q Consensus       194 i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d---~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~  270 (293)
                      |+++|+..+.. +.+......+....|+|+|++|+..+.+   ..|.+|+..++. .+.+.....+....|+|+|+.|++
T Consensus       316 Iy~~d~~g~~~-~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt~~~~~~~p~~spDG~~i~~  393 (435)
T PRK05137        316 LYVMNADGSNP-RRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-ERILTSGFLVEGPTWAPNGRVIMF  393 (435)
T ss_pred             EEEEECCCCCe-EEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc-eEeccCCCCCCCCeECCCCCEEEE
Confidence            78888776543 3344344556778899999999876643   358888875544 334433335678999999999988


Q ss_pred             EEcCC
Q 022716          271 AGDDK  275 (293)
Q Consensus       271 ~~~d~  275 (293)
                      .+.+.
T Consensus       394 ~~~~~  398 (435)
T PRK05137        394 FRQTP  398 (435)
T ss_pred             EEccC
Confidence            87643

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.61  E-value=2e-14  Score=110.79  Aligned_cols=205  Identities=18%  Similarity=0.210  Sum_probs=141.0

Q ss_pred             ccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCC---------------------Cce--eE----------------
Q 022716           19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGH---------------------GKV--KD----------------   59 (293)
Q Consensus        19 h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~---------------------~~~--~~----------------   59 (293)
                      |...|+.+.--|+ ..|.|=+.|..+.+|++.....                     +..  ..                
T Consensus        55 g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~  133 (323)
T KOG0322|consen   55 GRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDG  133 (323)
T ss_pred             ccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhcc
Confidence            4567888887776 5788999999999999864110                     000  00                


Q ss_pred             -----EE-----eeCCcCCeeEEEEcCCC-C-CEEEEEeCCCeEEEEeCCCCeeee-----------eeeecCceEEEEE
Q 022716           60 -----IE-----LRGHADSVDQLCWDPKH-A-DLIATASGDKTVRLWDARSGKCSQ-----------QAELSGENINITY  116 (293)
Q Consensus        60 -----~~-----~~~h~~~i~~~~~~~~~-~-~~l~s~~~d~~i~vwd~~~~~~~~-----------~~~~~~~~~~~~~  116 (293)
                           +.     -.+..+.+.+..+..+. . -+++.|-++|.+.+||+.++...-           ...+..++.++.|
T Consensus       134 g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldy  213 (323)
T KOG0322|consen  134 GDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDY  213 (323)
T ss_pred             CccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeee
Confidence                 00     00112344444432222 2 256677779999999998863211           1223456677877


Q ss_pred             cCCCCEEEEEeCCCeEEEEEccccc-eeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEE
Q 022716          117 KPDGTHIAVGNRDDELTILDVRKFK-PIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVS  195 (293)
Q Consensus       117 ~~~~~~l~~~~~d~~i~l~d~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~  195 (293)
                      .+.-..=++|+.+..+..|.++... .+...                 ....-.+.++.-+.+-||++.+|+++.|+.|+
T Consensus       214 as~~~rGisgga~dkl~~~Sl~~s~gslq~~-----------------~e~~lknpGv~gvrIRpD~KIlATAGWD~RiR  276 (323)
T KOG0322|consen  214 ASSCDRGISGGADDKLVMYSLNHSTGSLQIR-----------------KEITLKNPGVSGVRIRPDGKILATAGWDHRIR  276 (323)
T ss_pred             chhhcCCcCCCccccceeeeeccccCccccc-----------------ceEEecCCCccceEEccCCcEEeecccCCcEE
Confidence            7654455677777788888875431 11100                 01111233455677889999999999999999


Q ss_pred             EEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEc
Q 022716          196 LWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNV  241 (293)
Q Consensus       196 iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~  241 (293)
                      +|..+++..+..++.|...|++++|+|+...+|.+|.|+.|.+|++
T Consensus       277 Vyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  277 VYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             EEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            9999999999999999999999999999999999999999999985

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.60  E-value=3.9e-13  Score=104.25  Aligned_cols=117  Identities=24%  Similarity=0.412  Sum_probs=88.1

Q ss_pred             cCceEEEEEcCCCCEEEEEe--CCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEE
Q 022716          108 SGENINITYKPDGTHIAVGN--RDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYF  185 (293)
Q Consensus       108 ~~~~~~~~~~~~~~~l~~~~--~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  185 (293)
                      .+.+..++|+|+|+.+++..  .+..+.+||++. +++..                      .+......+.|+|+|+++
T Consensus        59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~-~~i~~----------------------~~~~~~n~i~wsP~G~~l  115 (194)
T PF08662_consen   59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKG-KKIFS----------------------FGTQPRNTISWSPDGRFL  115 (194)
T ss_pred             CCceEEEEECcCCCEEEEEEccCCcccEEEcCcc-cEeEe----------------------ecCCCceEEEECCCCCEE
Confidence            45688999999999876653  567999999862 22221                      122344578899999999


Q ss_pred             EEecC---CCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecC------CCcEEEEEcCCCCEEEEE
Q 022716          186 AVGSA---DSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASE------DLFIDISNVHTGRTVHQI  250 (293)
Q Consensus       186 ~~gs~---d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~------d~~i~iw~~~~~~~~~~~  250 (293)
                      ++++.   .|.|.+||.++.+.+.+.. | ..+..++|+|+|++|+++..      |+.++||+. .|+++...
T Consensus       116 ~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~-~G~~l~~~  186 (194)
T PF08662_consen  116 VLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSF-QGRLLYKK  186 (194)
T ss_pred             EEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEe-cCeEeEec
Confidence            98864   4679999999988887653 3 34789999999999999864      788999998 46666544

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.59  E-value=2.9e-14  Score=113.22  Aligned_cols=222  Identities=18%  Similarity=0.214  Sum_probs=145.0

Q ss_pred             EEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeee
Q 022716           25 SVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQ  104 (293)
Q Consensus        25 ~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~  104 (293)
                      -+.|||+|+++|+++.- .+.|=|.++-.   .  ..+----+.|.-+.|..+....|..+..|+.|.+|++...+.--.
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq---~--~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ck   86 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSETLQ---L--HQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCK   86 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccchhh---H--HHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEE
Confidence            46799999999999864 55555543210   0  000011245666677766544555567799999999977654333


Q ss_pred             ee-ecCceEEEEEcCCCCEEEEEe-CCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCC
Q 022716          105 AE-LSGENINITYKPDGTHIAVGN-RDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMG  182 (293)
Q Consensus       105 ~~-~~~~~~~~~~~~~~~~l~~~~-~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (293)
                      +. .......+.|+|||+.++..+ -+-+|.+|.+.+.......-                     ....+.-++|+|+|
T Consensus        87 Ideg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~---------------------pK~~~kg~~f~~dg  145 (447)
T KOG4497|consen   87 IDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPH---------------------PKTNVKGYAFHPDG  145 (447)
T ss_pred             eccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecc---------------------cccCceeEEECCCC
Confidence            32 344566789999997766555 58999999998755332211                     11123457889999


Q ss_pred             CEEEEecCCCcEEEEe---CCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEecCCCccee
Q 022716          183 RYFAVGSADSLVSLWD---ISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSV  259 (293)
Q Consensus       183 ~~l~~gs~d~~i~iwd---~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~i~~~  259 (293)
                      ++.+..+.-.....++   .+....++.+.-.....+.+.|+|||..||         +||.--..++..+...-.+..+
T Consensus       146 ~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~la---------Vwd~~Leykv~aYe~~lG~k~v  216 (447)
T KOG4497|consen  146 QFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLA---------VWDNVLEYKVYAYERGLGLKFV  216 (447)
T ss_pred             ceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEE---------EecchhhheeeeeeeccceeEE
Confidence            9988887653322222   223344455555556788899999998776         4554444444455555578899


Q ss_pred             EECCCCCeEEEEEcCCCCCCCCc
Q 022716          260 EWNPKYNLLAYAGDDKNKYQADE  282 (293)
Q Consensus       260 ~~sp~~~~la~~~~d~~~~~~~~  282 (293)
                      +|+|-+++||.|+.|+.+++.++
T Consensus       217 ~wsP~~qflavGsyD~~lrvlnh  239 (447)
T KOG4497|consen  217 EWSPCNQFLAVGSYDQMLRVLNH  239 (447)
T ss_pred             EeccccceEEeeccchhhhhhce
Confidence            99999999999999976666544

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.58  E-value=1.8e-12  Score=104.30  Aligned_cols=242  Identities=17%  Similarity=0.274  Sum_probs=155.2

Q ss_pred             cccEEEEEECCCC-CeEEEEeCCCcEEEeecCCCCC----------CceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeC-
Q 022716           20 KKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGH----------GKVKDIELRGHADSVDQLCWDPKHADLIATASG-   87 (293)
Q Consensus        20 ~~~v~~l~~s~~~-~~l~s~~~dg~v~iw~~~~~~~----------~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~-   87 (293)
                      ...|+|++|-|-+ ..|+.|.. +-|.+|..+....          ........++| .+|+++.|++++ ..+++++. 
T Consensus       140 QrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dg-t~l~tAS~g  216 (445)
T KOG2139|consen  140 QRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDG-TILVTASFG  216 (445)
T ss_pred             hcceeEEEeccCCcceeeeeec-ceeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCC-CEEeecccC
Confidence            3579999999976 45666664 6689998764211          11122344566 689999999885 45667665 


Q ss_pred             CCeEEEEeCCCCeeeeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeee-cccceeeeeEEecCCCEEE
Q 022716           88 DKTVRLWDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRR-KFGYEVNEIAWNMTGEMFF  165 (293)
Q Consensus        88 d~~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~  165 (293)
                      |..|.|||..++.+..... ..+.+.-+.|+||+.++++++-|+..++|.........+. .....++.-.|+|.|..+.
T Consensus       217 sssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLL  296 (445)
T KOG2139|consen  217 SSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLL  296 (445)
T ss_pred             cceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEE
Confidence            7889999999987765542 3345557899999999999999999999965433222222 2234678888999988766


Q ss_pred             Eec-CCCCEEEEEECCCCCEEE-EecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCC--------Cc
Q 022716          166 LTT-GNAGCYCIAIDPMGRYFA-VGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASED--------LF  235 (293)
Q Consensus       166 ~~~-~~~~~~~~~~~~~~~~l~-~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d--------~~  235 (293)
                      +++ +...++++.|+.....+. .++....+.+-|+..-.....-.-.-.+..+++|.|.|.+||+--..        ..
T Consensus       297 f~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~  376 (445)
T KOG2139|consen  297 FACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLH  376 (445)
T ss_pred             EEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhh
Confidence            655 455677888776544433 44444445555653211100001134678999999999999886332        33


Q ss_pred             EEEEEcCCCCEEEEEe----cCCCcceeEECCC
Q 022716          236 IDISNVHTGRTVHQIP----CRAAMNSVEWNPK  264 (293)
Q Consensus       236 i~iw~~~~~~~~~~~~----~~~~i~~~~~sp~  264 (293)
                      |.+||....-.+....    ....-.-|.|+|.
T Consensus       377 i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl  409 (445)
T KOG2139|consen  377 ISRFDTRKSPPVELSYCGMIGGEYPAYISFGPL  409 (445)
T ss_pred             hhhhcccccCceEEEecccccCCCCceEEeeec
Confidence            5677765543333221    1223456778774

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.58  E-value=1.8e-12  Score=113.35  Aligned_cols=220  Identities=18%  Similarity=0.233  Sum_probs=139.0

Q ss_pred             ceeecCccccEEEEEECCCCCeEEEEeCC---CcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCC
Q 022716           13 SREYTGHKKKVHSVAWNCTGTKLASGSVD---QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDK   89 (293)
Q Consensus        13 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~d---g~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~   89 (293)
                      .+.+..+...+.+.+|+|||++|+.++.+   ..|++|++....   ..  .+..+...+.+..|+|++..++++.+.++
T Consensus       182 ~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~---~~--~~~~~~~~~~~~~~spDg~~l~~~~~~~~  256 (417)
T TIGR02800       182 PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQ---RE--KVASFPGMNGAPAFSPDGSKLAVSLSKDG  256 (417)
T ss_pred             CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCC---EE--EeecCCCCccceEECCCCCEEEEEECCCC
Confidence            45566677789999999999999887654   479999987431   11  22334455667899998765666666554


Q ss_pred             --eEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeC-CC--eEEEEEccccceeeeecccceeeeeEEecCCCEE
Q 022716           90 --TVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNR-DD--ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMF  164 (293)
Q Consensus        90 --~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~--~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~  164 (293)
                        .|.+||+.++................|+|||+.++..+. ++  .+.++|+.+.....                    
T Consensus       257 ~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~--------------------  316 (417)
T TIGR02800       257 NPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRR--------------------  316 (417)
T ss_pred             CccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEE--------------------
Confidence              588889887754443333333446789999998877654 33  56667765433211                    


Q ss_pred             EEecCCCCEEEEEECCCCCEEEEecCCC---cEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCC---cEEE
Q 022716          165 FLTTGNAGCYCIAIDPMGRYFAVGSADS---LVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDL---FIDI  238 (293)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~l~~gs~d~---~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~---~i~i  238 (293)
                       +..........+++|++++++.++.++   .|.+||+.++.. ..+... .......|+|+|++|+..+.++   .+++
T Consensus       317 -l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~  393 (417)
T TIGR02800       317 -LTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-RVLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGL  393 (417)
T ss_pred             -eecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe-EEccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEE
Confidence             111122334567899999988887776   788999877543 233322 2345568999999988777653   3455


Q ss_pred             EEcCCCCEEEEEec-CCCcceeEE
Q 022716          239 SNVHTGRTVHQIPC-RAAMNSVEW  261 (293)
Q Consensus       239 w~~~~~~~~~~~~~-~~~i~~~~~  261 (293)
                      .+. +++....+.. ...+...+|
T Consensus       394 ~~~-~g~~~~~~~~~~g~~~~~~w  416 (417)
T TIGR02800       394 VST-DGRFRARLPLGNGDVREPAW  416 (417)
T ss_pred             EEC-CCceeeECCCCCCCcCCCCC
Confidence            553 3444444432 233444554

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.58  E-value=4.8e-13  Score=108.42  Aligned_cols=246  Identities=18%  Similarity=0.215  Sum_probs=169.9

Q ss_pred             cccEEEEEECCCCC--eEEEEeCCCcEEEeecCCCCCCcee-E-EEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEe
Q 022716           20 KKKVHSVAWNCTGT--KLASGSVDQTARVWHIEPHGHGKVK-D-IELRGHADSVDQLCWDPKHADLIATASGDKTVRLWD   95 (293)
Q Consensus        20 ~~~v~~l~~s~~~~--~l~s~~~dg~v~iw~~~~~~~~~~~-~-~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd   95 (293)
                      ...|+.++|..+++  .|.-.+.|-.+..+.+.+....... . .....-.++|..++..   ...|++|-.+|.+.+|.
T Consensus        55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~---dg~Litc~~sG~l~~~~  131 (412)
T KOG3881|consen   55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA---DGTLITCVSSGNLQVRH  131 (412)
T ss_pred             hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc---CCEEEEEecCCcEEEEe
Confidence            45788888876654  3444446777777776543321110 0 0122345566666542   24678899999999999


Q ss_pred             CCCCe----eeeeeeecCceEEEEEcCCCCEE-EEEeCC--CeEEEEEccccceeeeecc----cceeeeeEEecCCCEE
Q 022716           96 ARSGK----CSQQAELSGENINITYKPDGTHI-AVGNRD--DELTILDVRKFKPIHRRKF----GYEVNEIAWNMTGEMF  164 (293)
Q Consensus        96 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~l-~~~~~d--~~i~l~d~~~~~~~~~~~~----~~~~~~v~~~~~~~~~  164 (293)
                      .+.+.    .+..+........+.-+|...++ ++|+..  +.+.+||+.+.+++...+.    .....--.|       
T Consensus       132 ~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW-------  204 (412)
T KOG3881|consen  132 DKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVW-------  204 (412)
T ss_pred             ccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeee-------
Confidence            87543    22233344455556656655555 558888  8999999987654433221    011111122       


Q ss_pred             EEecCCCCEEEEEECCC--CCEEEEecCCCcEEEEeCCCCE-EEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEc
Q 022716          165 FLTTGNAGCYCIAIDPM--GRYFAVGSADSLVSLWDISEML-CVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNV  241 (293)
Q Consensus       165 ~~~~~~~~~~~~~~~~~--~~~l~~gs~d~~i~iwd~~~~~-~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~  241 (293)
                              ++.+.|-+.  ...||+++.-+.+++||.+.++ ++.++.-.+.++.++...|+++++++|..-+.+..+|.
T Consensus       205 --------~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~  276 (412)
T KOG3881|consen  205 --------ITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDL  276 (412)
T ss_pred             --------eccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecc
Confidence                    345667666  7889999999999999998664 45566666789999999999999999999999999999


Q ss_pred             CCCCEEEE-E-ecCCCcceeEECCCCCeEEEEEcCCCCCCCCcc
Q 022716          242 HTGRTVHQ-I-PCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEG  283 (293)
Q Consensus       242 ~~~~~~~~-~-~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~  283 (293)
                      ..++.+.. + ...++|++|.-+|...++|++|.|++++|+|--
T Consensus       277 r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~k  320 (412)
T KOG3881|consen  277 RGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIK  320 (412)
T ss_pred             cCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecc
Confidence            99887654 4 356789999999999999999999876665543

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.56  E-value=6.7e-12  Score=110.09  Aligned_cols=223  Identities=13%  Similarity=0.189  Sum_probs=138.5

Q ss_pred             ceeecCccccEEEEEECCCCCeEEEEeCC---CcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCC
Q 022716           13 SREYTGHKKKVHSVAWNCTGTKLASGSVD---QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDK   89 (293)
Q Consensus        13 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~d---g~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~   89 (293)
                      .+.++.+...+...+|+|||++|+..+.+   ..|.+|+++...   ..  .+......+....|+|++..++++...++
T Consensus       191 ~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~---~~--~l~~~~g~~~~~~~SpDG~~la~~~~~~g  265 (430)
T PRK00178        191 AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGR---RE--QITNFEGLNGAPAWSPDGSKLAFVLSKDG  265 (430)
T ss_pred             ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCC---EE--EccCCCCCcCCeEECCCCCEEEEEEccCC
Confidence            44566777889999999999999877654   357788886432   11  12222334456789998766666666655


Q ss_pred             --eEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeC-CC--eEEEEEccccceeeeecccceeeeeEEecCCCEE
Q 022716           90 --TVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNR-DD--ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMF  164 (293)
Q Consensus        90 --~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~--~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~  164 (293)
                        .|.+||+.++................|+|||+.++..+. ++  .+.++|+.+.+..+..          +       
T Consensus       266 ~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt----------~-------  328 (430)
T PRK00178        266 NPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVT----------F-------  328 (430)
T ss_pred             CceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee----------c-------
Confidence              578889988765443333334456789999998877664 33  5666676554422111          0       


Q ss_pred             EEecCCCCEEEEEECCCCCEEEEecCC-C--cEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCC---CcEEE
Q 022716          165 FLTTGNAGCYCIAIDPMGRYFAVGSAD-S--LVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASED---LFIDI  238 (293)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~l~~gs~d-~--~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d---~~i~i  238 (293)
                          ........+++|+++.++..+.+ +  .|.++|+.++.. +.+.. ........|+|+|++++..+.+   ..+++
T Consensus       329 ----~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~-~~lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~  402 (430)
T PRK00178        329 ----VGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV-RILTD-TSLDESPSVAPNGTMLIYATRQQGRGVLML  402 (430)
T ss_pred             ----CCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCE-EEccC-CCCCCCceECCCCCEEEEEEecCCceEEEE
Confidence                00111235678998888776543 2  488889887653 33332 1223356899999998776643   34667


Q ss_pred             EEcCCCCEEEEEec-CCCcceeEECCC
Q 022716          239 SNVHTGRTVHQIPC-RAAMNSVEWNPK  264 (293)
Q Consensus       239 w~~~~~~~~~~~~~-~~~i~~~~~sp~  264 (293)
                      .+.. +.....+.. .+.+...+|+|-
T Consensus       403 ~~~~-g~~~~~l~~~~g~~~~p~ws~~  428 (430)
T PRK00178        403 VSIN-GRVRLPLPTAQGEVREPSWSPY  428 (430)
T ss_pred             EECC-CCceEECcCCCCCcCCCccCCC
Confidence            7774 443434433 345777889884

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.55  E-value=1.4e-12  Score=106.04  Aligned_cols=219  Identities=16%  Similarity=0.212  Sum_probs=155.4

Q ss_pred             CccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcC---CeeEEEEcCCCCCEEEEEeCCCeEEEE
Q 022716           18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHAD---SVDQLCWDPKHADLIATASGDKTVRLW   94 (293)
Q Consensus        18 ~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~---~i~~~~~~~~~~~~l~s~~~d~~i~vw   94 (293)
                      .|.+.|-||+|+...+.+.+|+.+++|..-|+++.     ..+....|++   .|+.+..+|.+ +.|++.+.++.|.+|
T Consensus       103 ~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~-----qsi~V~~~~~~~~~VY~m~~~P~D-N~~~~~t~~~~V~~~  176 (609)
T KOG4227|consen  103 PHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETK-----QSIYVANENNNRGDVYHMDQHPTD-NTLIVVTRAKLVSFI  176 (609)
T ss_pred             ccccceEEEEEccCCeeEecCCCcceeEeeecccc-----eeeeeecccCcccceeecccCCCC-ceEEEEecCceEEEE
Confidence            34589999999999999999999999999999753     3344556665   79999999984 678899999999999


Q ss_pred             eCCCCee----eeeeeecCceEEEEEcCCC-CEEEEEeCCCeEEEEEccccc-eeeeec----ccce---eeeeEEecCC
Q 022716           95 DARSGKC----SQQAELSGENINITYKPDG-THIAVGNRDDELTILDVRKFK-PIHRRK----FGYE---VNEIAWNMTG  161 (293)
Q Consensus        95 d~~~~~~----~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~l~d~~~~~-~~~~~~----~~~~---~~~v~~~~~~  161 (293)
                      |.+...-    .-.........++.|.|.. .++++.++.+-+.+||.+... ++.+..    ++.+   -..+.|++.|
T Consensus       177 D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G  256 (609)
T KOG4227|consen  177 DNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSG  256 (609)
T ss_pred             eccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCC
Confidence            9976541    1111233445678888854 577888888999999988643 222211    1111   2457788877


Q ss_pred             CEEEEecC----------C-------------C-----CEEEEEECCCCCEEEEecCCCcEEEEeCCC-----C------
Q 022716          162 EMFFLTTG----------N-------------A-----GCYCIAIDPMGRYFAVGSADSLVSLWDISE-----M------  202 (293)
Q Consensus       162 ~~~~~~~~----------~-------------~-----~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~-----~------  202 (293)
                      ..++..-.          .             +     .+.+++|- +...+++|+.+-.|++|.+..     +      
T Consensus       257 ~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~-~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~  335 (609)
T KOG4227|consen  257 NQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFI-DDYTVATGSDHWGIHIWKLPRANDSYGFTQIGH  335 (609)
T ss_pred             CeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeee-cceeeeccCcccceEEEecCCCccccCccccCc
Confidence            65432111          0             1     12233333 345599999999999998742     1      


Q ss_pred             ------------EEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCC
Q 022716          203 ------------LCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHT  243 (293)
Q Consensus       203 ------------~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~  243 (293)
                                  ..+..+++|..-++.+.|+|-..+|++.+-...++||.-..
T Consensus       336 ~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~r  388 (609)
T KOG4227|consen  336 DEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDHR  388 (609)
T ss_pred             chhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheecccccc
Confidence                        11345678999999999999999999999999999997643

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.54  E-value=1.6e-11  Score=107.35  Aligned_cols=204  Identities=18%  Similarity=0.205  Sum_probs=131.3

Q ss_pred             cEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCC---CeEEEEeCCCCeeeeeeeecCceEEEEEcCC
Q 022716           43 TARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD---KTVRLWDARSGKCSQQAELSGENINITYKPD  119 (293)
Q Consensus        43 ~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  119 (293)
                      .|.++|.+..   ..  ..+..+...+....|+|++. .|+.+..+   ..|.+||+.+++........+....++|+||
T Consensus       171 ~l~~~d~~g~---~~--~~l~~~~~~~~~p~~Spdg~-~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spD  244 (417)
T TIGR02800       171 ELQVADYDGA---NP--QTITRSREPILSPAWSPDGQ-KLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPD  244 (417)
T ss_pred             eEEEEcCCCC---CC--EEeecCCCceecccCCCCCC-EEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCC
Confidence            4666665422   11  22345566788889999865 44444432   5799999988765444444555667899999


Q ss_pred             CCEEEEE-eCCC--eEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecC-CC--c
Q 022716          120 GTHIAVG-NRDD--ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSA-DS--L  193 (293)
Q Consensus       120 ~~~l~~~-~~d~--~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~-d~--~  193 (293)
                      |+.|+.. +.++  .+.+||+.+.........                     ........|+|+++.|+..+. ++  .
T Consensus       245 g~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~---------------------~~~~~~~~~s~dg~~l~~~s~~~g~~~  303 (417)
T TIGR02800       245 GSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNG---------------------PGIDTEPSWSPDGKSIAFTSDRGGSPQ  303 (417)
T ss_pred             CCEEEEEECCCCCccEEEEECCCCCEEECCCC---------------------CCCCCCEEECCCCCEEEEEECCCCCce
Confidence            9987754 3343  588888876543221111                     111123467888887766554 33  5


Q ss_pred             EEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCC---cEEEEEcCCCCEEEEEecCCCcceeEECCCCCeEEE
Q 022716          194 VSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDL---FIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAY  270 (293)
Q Consensus       194 i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~---~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~  270 (293)
                      |.++|+..+.. ..+...........|+|+|++++..+.+.   .|.++|..++.. ..+..........|+|++++|++
T Consensus       304 iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~p~~spdg~~l~~  381 (417)
T TIGR02800       304 IYMMDADGGEV-RRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-RVLTDTGLDESPSFAPNGRMILY  381 (417)
T ss_pred             EEEEECCCCCE-EEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe-EEccCCCCCCCceECCCCCEEEE
Confidence            77778776643 33444445667889999999998888765   788999887543 33333333456789999999998


Q ss_pred             EEcCC
Q 022716          271 AGDDK  275 (293)
Q Consensus       271 ~~~d~  275 (293)
                      ++.++
T Consensus       382 ~~~~~  386 (417)
T TIGR02800       382 ATTRG  386 (417)
T ss_pred             EEeCC
Confidence            88764

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.53  E-value=1.9e-11  Score=98.69  Aligned_cols=191  Identities=15%  Similarity=0.269  Sum_probs=135.6

Q ss_pred             cEEEEEECCCCCeEEEEeCC--CcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCC
Q 022716           22 KVHSVAWNCTGTKLASGSVD--QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG   99 (293)
Q Consensus        22 ~v~~l~~s~~~~~l~s~~~d--g~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~   99 (293)
                      .|...-||.+  ++|..+.+  ..+++.++...  ..+..+   -....|.+|.++.+  .+++ +-++ .|.|||+++=
T Consensus        48 ~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~--~~ICe~---~fpt~IL~VrmNr~--RLvV-~Lee-~IyIydI~~M  116 (391)
T KOG2110|consen   48 SIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKK--TTICEI---FFPTSILAVRMNRK--RLVV-CLEE-SIYIYDIKDM  116 (391)
T ss_pred             EEEEeecccc--eeEEEecCCCceEEEEEcccC--ceEEEE---ecCCceEEEEEccc--eEEE-EEcc-cEEEEecccc
Confidence            4555566543  44444444  34778777532  122222   23467999998753  3444 4443 3999999887


Q ss_pred             eeeeeeeec-CceE-EEEEcCC--CCEEEEEe--CCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCE
Q 022716          100 KCSQQAELS-GENI-NITYKPD--GTHIAVGN--RDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGC  173 (293)
Q Consensus       100 ~~~~~~~~~-~~~~-~~~~~~~--~~~l~~~~--~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  173 (293)
                      +.+..++.. ..+. -++++|+  +.+++.=+  ..|.|.+||+.+.++...                    +..|.+.+
T Consensus       117 klLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~--------------------I~aH~~~l  176 (391)
T KOG2110|consen  117 KLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNT--------------------INAHKGPL  176 (391)
T ss_pred             eeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeE--------------------EEecCCce
Confidence            777766543 2222 3555554  44776543  368999999887665543                    34678889


Q ss_pred             EEEEECCCCCEEEEecCCCc-EEEEeCCCCEEEEEeeccC--CCeeEEEEccCCCEEEEecCCCcEEEEEcCC
Q 022716          174 YCIAIDPMGRYFAVGSADSL-VSLWDISEMLCVRTFTKLE--WPVRTISFSHTGDYIASASEDLFIDISNVHT  243 (293)
Q Consensus       174 ~~~~~~~~~~~l~~gs~d~~-i~iwd~~~~~~~~~~~~~~--~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~  243 (293)
                      -|++|+++|..+|++|+.|+ ||+|.+.++.++.+|..-.  -.|.+++|+|++++|++.|.-++|.++.+.+
T Consensus       177 Aalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~  249 (391)
T KOG2110|consen  177 AALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK  249 (391)
T ss_pred             eEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence            99999999999999999998 8999999999999987543  3588999999999999999999999997753

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.52  E-value=7.9e-12  Score=106.35  Aligned_cols=267  Identities=16%  Similarity=0.120  Sum_probs=149.9

Q ss_pred             eeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEE
Q 022716           14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL   93 (293)
Q Consensus        14 ~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~v   93 (293)
                      ..+....+.-..+.|+|||+++.+++.||.|.++|+....  ....+.. +  .....+++++++.-++++.-..+.+.+
T Consensus        30 ~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~--~v~~i~~-G--~~~~~i~~s~DG~~~~v~n~~~~~v~v  104 (369)
T PF02239_consen   30 ARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGK--VVATIKV-G--GNPRGIAVSPDGKYVYVANYEPGTVSV  104 (369)
T ss_dssp             EEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSS--EEEEEE--S--SEEEEEEE--TTTEEEEEEEETTEEEE
T ss_pred             EEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCccc--EEEEEec-C--CCcceEEEcCCCCEEEEEecCCCceeE
Confidence            3343333333457899999999999999999999998642  2222322 2  224578888876544555567999999


Q ss_pred             EeCCCCeeeeeeeecC--------ceEEEEEcCCCCEEEEEeC-CCeEEEEEccccceee--eecccceeeeeEEecCCC
Q 022716           94 WDARSGKCSQQAELSG--------ENINITYKPDGTHIAVGNR-DDELTILDVRKFKPIH--RRKFGYEVNEIAWNMTGE  162 (293)
Q Consensus        94 wd~~~~~~~~~~~~~~--------~~~~~~~~~~~~~l~~~~~-d~~i~l~d~~~~~~~~--~~~~~~~~~~v~~~~~~~  162 (293)
                      +|.++.+.+..+...+        .+..+..+|....++..-. .+++.+.|..+..+..  ....+.......|++.++
T Consensus       105 ~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgr  184 (369)
T PF02239_consen  105 IDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGR  184 (369)
T ss_dssp             EETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSS
T ss_pred             eccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccc
Confidence            9999988777655332        3445666788776666554 5889888987655443  233344456678888887


Q ss_pred             EEEEecCCCCEE------------EE-------------EECCCC----------CEEEEecCCCcEEEEeCCCCEEEEE
Q 022716          163 MFFLTTGNAGCY------------CI-------------AIDPMG----------RYFAVGSADSLVSLWDISEMLCVRT  207 (293)
Q Consensus       163 ~~~~~~~~~~~~------------~~-------------~~~~~~----------~~l~~gs~d~~i~iwd~~~~~~~~~  207 (293)
                      .++.+.....-.            .+             -.||..          ...++.-....+.+||...++.+++
T Consensus       185 y~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~  264 (369)
T PF02239_consen  185 YFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKT  264 (369)
T ss_dssp             EEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEE
T ss_pred             eeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEE
Confidence            766543221100            00             012221          1111111222444577777777777


Q ss_pred             eeccCCCeeEEEEccCCCEEEEe----cCCCcEEEEEcCCCCEEEEEecC--CCcceeEECCCCCeEEEEEcCCC--CCC
Q 022716          208 FTKLEWPVRTISFSHTGDYIASA----SEDLFIDISNVHTGRTVHQIPCR--AAMNSVEWNPKYNLLAYAGDDKN--KYQ  279 (293)
Q Consensus       208 ~~~~~~~v~~l~~sp~~~~l~s~----s~d~~i~iw~~~~~~~~~~~~~~--~~i~~~~~sp~~~~la~~~~d~~--~~~  279 (293)
                      +.....+ .-+.-+|+++++...    .....|.++|.++.+.++.+...  .++..++|+++|.++-.+..+++  +.+
T Consensus       265 I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v  343 (369)
T PF02239_consen  265 IPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVV  343 (369)
T ss_dssp             EE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEE
T ss_pred             EECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEE
Confidence            7665555 677889999999887    45588999999998777776532  34888999999987655555543  444


Q ss_pred             CCcceEE
Q 022716          280 ADEGVFR  286 (293)
Q Consensus       280 ~~~~~~~  286 (293)
                      .|..+++
T Consensus       344 ~D~~Tl~  350 (369)
T PF02239_consen  344 YDAKTLK  350 (369)
T ss_dssp             EETTTTE
T ss_pred             EECCCcE
Confidence            4444433

...

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.52  E-value=1.5e-11  Score=107.95  Aligned_cols=222  Identities=15%  Similarity=0.193  Sum_probs=133.4

Q ss_pred             eeecCccccEEEEEECCCCCeEEEEeCC-C--cEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCe
Q 022716           14 REYTGHKKKVHSVAWNCTGTKLASGSVD-Q--TARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKT   90 (293)
Q Consensus        14 ~~~~~h~~~v~~l~~s~~~~~l~s~~~d-g--~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~   90 (293)
                      +.++.+...+.+..|||||+.|+..+.+ +  .|.+||+....   ...  +...........|+|++..++++.+.++.
T Consensus       211 ~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~---~~~--lt~~~g~~~~~~wSPDG~~La~~~~~~g~  285 (448)
T PRK04792        211 QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQV---REK--VTSFPGINGAPRFSPDGKKLALVLSKDGQ  285 (448)
T ss_pred             eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCC---eEE--ecCCCCCcCCeeECCCCCEEEEEEeCCCC
Confidence            3344556678899999999999876543 3  46777775421   111  11112233467899987666667777775


Q ss_pred             --EEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeC-CC--eEEEEEccccceeeeecccceeeeeEEecCCCEEE
Q 022716           91 --VRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNR-DD--ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFF  165 (293)
Q Consensus        91 --i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~--~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  165 (293)
                        |.++|+.+++...............|+|||+.++..+. ++  .+.++|+.+.+.....          +        
T Consensus       286 ~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt----------~--------  347 (448)
T PRK04792        286 PEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLT----------F--------  347 (448)
T ss_pred             eEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEe----------c--------
Confidence              77778877765443333334556889999998877653 33  4555666544322110          0        


Q ss_pred             EecCCCCEEEEEECCCCCEEEEecC-CC--cEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecC-CCc--EEEE
Q 022716          166 LTTGNAGCYCIAIDPMGRYFAVGSA-DS--LVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASE-DLF--IDIS  239 (293)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~l~~gs~-d~--~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~-d~~--i~iw  239 (293)
                         ........+++|+|++++..+. ++  .|.++|+.++.. ..+.... ......|+|+|+.|+..+. ++.  ++++
T Consensus       348 ---~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~-~~lt~~~-~d~~ps~spdG~~I~~~~~~~g~~~l~~~  422 (448)
T PRK04792        348 ---EGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAM-QVLTSTR-LDESPSVAPNGTMVIYSTTYQGKQVLAAV  422 (448)
T ss_pred             ---CCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCe-EEccCCC-CCCCceECCCCCEEEEEEecCCceEEEEE
Confidence               0111123577899888776654 33  355568777643 2333221 2234579999998876654 333  6777


Q ss_pred             EcCCCCEEEEEec-CCCcceeEECCC
Q 022716          240 NVHTGRTVHQIPC-RAAMNSVEWNPK  264 (293)
Q Consensus       240 ~~~~~~~~~~~~~-~~~i~~~~~sp~  264 (293)
                      +. +|+....+.. ...+...+|+|-
T Consensus       423 ~~-~G~~~~~l~~~~g~~~~p~Wsp~  447 (448)
T PRK04792        423 SI-DGRFKARLPAGQGEVKSPAWSPF  447 (448)
T ss_pred             EC-CCCceEECcCCCCCcCCCccCCC
Confidence            76 5665555543 345778899983

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.51  E-value=1e-11  Score=100.11  Aligned_cols=230  Identities=17%  Similarity=0.256  Sum_probs=150.9

Q ss_pred             ccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCC-
Q 022716           21 KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG-   99 (293)
Q Consensus        21 ~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~-   99 (293)
                      ..+..++|++.-..+|++..|-.||+|+-....   ...++ ..-...|++++|-|-....| +.+..+-|.+|..... 
T Consensus        99 ~dlr~~aWhqH~~~fava~nddvVriy~ksst~---pt~Lk-s~sQrnvtclawRPlsasel-avgCr~gIciW~~s~tl  173 (445)
T KOG2139|consen   99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTC---PTKLK-SVSQRNVTCLAWRPLSASEL-AVGCRAGICIWSDSRTL  173 (445)
T ss_pred             cceeeEeechhhhhhhhhccCcEEEEeccCCCC---Cceec-chhhcceeEEEeccCCccee-eeeecceeEEEEcCccc
Confidence            467889999877778999999999999865421   11111 12245699999999766554 4566777899975321 


Q ss_pred             ---e--------eeeeee--ecCceEEEEEcCCCCEEEEEeC-CCeEEEEEccccceeeeecccceeeeeEEecCCCEEE
Q 022716          100 ---K--------CSQQAE--LSGENINITYKPDGTHIAVGNR-DDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFF  165 (293)
Q Consensus       100 ---~--------~~~~~~--~~~~~~~~~~~~~~~~l~~~~~-d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  165 (293)
                         +        +.+.+.  .+..+.+++|.+||..+++++- |..|.+||..+...+.....                 
T Consensus       174 n~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~-----------------  236 (445)
T KOG2139|consen  174 NANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPK-----------------  236 (445)
T ss_pred             ccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccccc-----------------
Confidence               1        111122  2345778999999999999885 67899999876543332211                 


Q ss_pred             EecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCC-CEEEEEeeccCCCeeEEEEccCCCEEE-EecCCCcEEEEEcCC
Q 022716          166 LTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISE-MLCVRTFTKLEWPVRTISFSHTGDYIA-SASEDLFIDISNVHT  243 (293)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~-~~~~~~~~~~~~~v~~l~~sp~~~~l~-s~s~d~~i~iw~~~~  243 (293)
                         +-+++.-+.|+||+.++..++-|+..++|+..+ ..+.+-. --...|..-+|+|+|++|. +++..-.++--.+..
T Consensus       237 ---glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~-lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~  312 (445)
T KOG2139|consen  237 ---GLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWI-LGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDG  312 (445)
T ss_pred             ---CCCceeeEEEcCCCCEEEEecccceeeeehhcccceeccee-ccCCceeeeeecCCCCEEEEEEcCCceEEEEeecC
Confidence               223455788999999999999999999996543 3333222 2334899999999998764 444444333222211


Q ss_pred             --C--------CEEEE---Ee----------cCCCcceeEECCCCCeEEEEEcCCC
Q 022716          244 --G--------RTVHQ---IP----------CRAAMNSVEWNPKYNLLAYAGDDKN  276 (293)
Q Consensus       244 --~--------~~~~~---~~----------~~~~i~~~~~sp~~~~la~~~~d~~  276 (293)
                        +        +.+..   ++          .-++.-+++|.|.|++||+.=..++
T Consensus       313 ~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~  368 (445)
T KOG2139|consen  313 EDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQS  368 (445)
T ss_pred             CCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCc
Confidence              1        01100   00          1245678999999999999866655

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.51  E-value=2.5e-12  Score=117.68  Aligned_cols=216  Identities=17%  Similarity=0.237  Sum_probs=145.3

Q ss_pred             EEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCC-------eeeeeee-ecCceEEEEEcCCCCEEEEEeCCCe
Q 022716           60 IELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG-------KCSQQAE-LSGENINITYKPDGTHIAVGNRDDE  131 (293)
Q Consensus        60 ~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~-------~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~  131 (293)
                      ..+..|+..+..++.++....+|+|||.||+|++||.+.-       ++..++. ..+.+..+...+.+.++++++.||.
T Consensus      1042 AhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~ 1121 (1431)
T KOG1240|consen 1042 AHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGS 1121 (1431)
T ss_pred             ehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCe
Confidence            3566788888888888876689999999999999997532       1222233 3455667788889999999999999


Q ss_pred             EEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECC-CCC-EEEEecCCCcEEEEeCCCCEEEEEee
Q 022716          132 LTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDP-MGR-YFAVGSADSLVSLWDISEMLCVRTFT  209 (293)
Q Consensus       132 i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~l~~gs~d~~i~iwd~~~~~~~~~~~  209 (293)
                      |.+.++.-.+..+....  .+....-...|..         +..-++.. .+. .++.++.-+.|..||++....+-.++
T Consensus      1122 v~~~~id~~~~~~~~~~--~~ri~n~~~~g~v---------v~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk 1190 (1431)
T KOG1240|consen 1122 VRVLRIDHYNVSKRVAT--QVRIPNLKKDGVV---------VSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLK 1190 (1431)
T ss_pred             EEEEEccccccccceee--eeecccccCCCce---------EEeecccccccceeEEEEEeccceEEecchhhhhHHhhh
Confidence            99998865321111000  0000000001110         11112211 233 67778888999999998765443332


Q ss_pred             --ccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEE--EEecCCCcceeEECCCC---CeEEEEEcCCCCCCCCc
Q 022716          210 --KLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVH--QIPCRAAMNSVEWNPKY---NLLAYAGDDKNKYQADE  282 (293)
Q Consensus       210 --~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~--~~~~~~~i~~~~~sp~~---~~la~~~~d~~~~~~~~  282 (293)
                        .-.+.|++++.+|.++++++|..-|.+.+||++-+..+.  .++.+.+|+.+..+|..   ...++++..      ..
T Consensus      1191 ~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~------~~ 1264 (1431)
T KOG1240|consen 1191 NQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSS------SN 1264 (1431)
T ss_pred             cCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEeccc------CC
Confidence              234689999999999999999999999999998877765  45678889998887744   466666653      23


Q ss_pred             ceEEEEeeec
Q 022716          283 GVFRIYGFEN  292 (293)
Q Consensus       283 ~~~~~~~~~~  292 (293)
                      .-+-+|++|+
T Consensus      1265 nevs~wn~~~ 1274 (1431)
T KOG1240|consen 1265 NEVSTWNMET 1274 (1431)
T ss_pred             Cceeeeeccc
Confidence            4467777765

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.50  E-value=5.2e-12  Score=100.11  Aligned_cols=202  Identities=17%  Similarity=0.235  Sum_probs=142.5

Q ss_pred             cceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (293)
Q Consensus        12 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i   91 (293)
                      +.+++..|...|+++.|+|.++.|++++.|..-.+|...+...- ...+.+..|+...+++.|+|. ++.|+.|+....|
T Consensus        47 ~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~W-kptlvLlRiNrAAt~V~WsP~-enkFAVgSgar~i  124 (361)
T KOG1523|consen   47 PAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTW-KPTLVLLRINRAATCVKWSPK-ENKFAVGSGARLI  124 (361)
T ss_pred             eceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCee-ccceeEEEeccceeeEeecCc-CceEEeccCccEE
Confidence            34678899999999999999999999999999999988433221 123456678899999999997 5789999999999


Q ss_pred             EEEeCCCCeee-----eeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceee---e----ecccceeeeeEEec
Q 022716           92 RLWDARSGKCS-----QQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIH---R----RKFGYEVNEIAWNM  159 (293)
Q Consensus        92 ~vwd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~---~----~~~~~~~~~v~~~~  159 (293)
                      .||-.....--     ........+.++.|+|++-+|++|+.|+.++++..--+..-.   .    .++++..-...|  
T Consensus       125 sVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~--  202 (361)
T KOG1523|consen  125 SVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEA--  202 (361)
T ss_pred             EEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhh--
Confidence            99977554321     011234557899999999999999999999998642110000   0    001111100111  


Q ss_pred             CCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCE-EEEEeeccCCCeeEEEEccCC
Q 022716          160 TGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEML-CVRTFTKLEWPVRTISFSHTG  224 (293)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~-~~~~~~~~~~~v~~l~~sp~~  224 (293)
                             ....+.+-.+.|+|.|..|+-.+.|.++.+-|..... .+.......-|..++.|-.+.
T Consensus       203 -------~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~  261 (361)
T KOG1523|consen  203 -------SSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISEN  261 (361)
T ss_pred             -------ccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhccCCceeeEeecCC
Confidence                   1233456678999999999999999999999976653 344444444688888775544

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.50  E-value=2.8e-11  Score=95.99  Aligned_cols=175  Identities=13%  Similarity=0.247  Sum_probs=123.2

Q ss_pred             CcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCC-CCeeeeeeeecCceE-EEEEcCC
Q 022716           42 QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDAR-SGKCSQQAELSGENI-NITYKPD  119 (293)
Q Consensus        42 g~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~-~~~~~~~~~~~~~~~-~~~~~~~  119 (293)
                      +.|.||| +. .......+.+   ..+|.++.+.++   .++. -....|.||... +.+.+..++....+. -++..|.
T Consensus        75 NkviIWD-D~-k~~~i~el~f---~~~I~~V~l~r~---riVv-vl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~  145 (346)
T KOG2111|consen   75 NKVIIWD-DL-KERCIIELSF---NSEIKAVKLRRD---RIVV-VLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPT  145 (346)
T ss_pred             ceEEEEe-cc-cCcEEEEEEe---ccceeeEEEcCC---eEEE-EecCeEEEEEcCCChhheeeeecccCCCceEeecCC
Confidence            5899998 21 1122233333   567999998653   3433 457889999886 444445444433222 2334442


Q ss_pred             -CCEEEE--EeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCc-EE
Q 022716          120 -GTHIAV--GNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSL-VS  195 (293)
Q Consensus       120 -~~~l~~--~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~-i~  195 (293)
                       ++.+++  |-.-|.+.+.|+.....                  +....+..|+..|.|++++-+|..+|++|..|+ |+
T Consensus       146 ~~k~~LafPg~k~GqvQi~dL~~~~~------------------~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIR  207 (346)
T KOG2111|consen  146 SNKSLLAFPGFKTGQVQIVDLASTKP------------------NAPSIINAHDSDIACVALNLQGTLVATASTKGTLIR  207 (346)
T ss_pred             CCceEEEcCCCccceEEEEEhhhcCc------------------CCceEEEcccCceeEEEEcCCccEEEEeccCcEEEE
Confidence             222322  33457788888765332                  123456778899999999999999999999998 89


Q ss_pred             EEeCCCCEEEEEeecc--CCCeeEEEEccCCCEEEEecCCCcEEEEEcCC
Q 022716          196 LWDISEMLCVRTFTKL--EWPVRTISFSHTGDYIASASEDLFIDISNVHT  243 (293)
Q Consensus       196 iwd~~~~~~~~~~~~~--~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~  243 (293)
                      |||..+++.+.++..-  ...|.+++|||+..+||.+|+.|++.|+.++.
T Consensus       208 IFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  208 IFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             EEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence            9999999999988653  34799999999999999999999999998865

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.49  E-value=5.9e-14  Score=118.69  Aligned_cols=223  Identities=20%  Similarity=0.311  Sum_probs=160.8

Q ss_pred             cccccccceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCce---eEEEeeCCcCCeeEEEEcCCCCCEE
Q 022716            6 IPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKV---KDIELRGHADSVDQLCWDPKHADLI   82 (293)
Q Consensus         6 ~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~---~~~~~~~h~~~i~~~~~~~~~~~~l   82 (293)
                      ..|+++....|+||...|..++--.+.+-+++++.|++||+|.+.+...+..   ....+..|+.+|.++.|..+. ..+
T Consensus       721 ln~~~irL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~l-r~i  799 (1034)
T KOG4190|consen  721 LNFDHIRLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADL-RSI  799 (1034)
T ss_pred             cccceeeeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeecc-cee
Confidence            4566777788999999999998777788899999999999999976543332   345677899999999987542 333


Q ss_pred             EEEeCCCeEEEEeCCCCeeeeeeee---cCceEEEEEcC--CCCEEEEE-eCCCeEEEEEccccceeeeecccceeeeeE
Q 022716           83 ATASGDKTVRLWDARSGKCSQQAEL---SGENINITYKP--DGTHIAVG-NRDDELTILDVRKFKPIHRRKFGYEVNEIA  156 (293)
Q Consensus        83 ~s~~~d~~i~vwd~~~~~~~~~~~~---~~~~~~~~~~~--~~~~l~~~-~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~  156 (293)
                        ++.|+-|++||.--++.+..+..   ++....+..-|  +...++.| +...+++++|.|...-..+.+..       
T Consensus       800 --~ScD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVc-------  870 (1034)
T KOG4190|consen  800 --ASCDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVC-------  870 (1034)
T ss_pred             --eeccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEec-------
Confidence              57899999999876665543332   22222333223  33445555 67889999999876544332210       


Q ss_pred             EecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcE
Q 022716          157 WNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFI  236 (293)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i  236 (293)
                       +       ....++-+-++++-|.|+.++.+-++|+|.+.|.+++..++++...+-....++ .|..+.|+....|..+
T Consensus       871 -n-------a~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHsl  941 (1034)
T KOG4190|consen  871 -N-------APGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSL  941 (1034)
T ss_pred             -c-------CCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhccccee
Confidence             0       011223456889999999999999999999999999999988877666666665 4778888888889888


Q ss_pred             EE-EEcCCCCEE
Q 022716          237 DI-SNVHTGRTV  247 (293)
Q Consensus       237 ~i-w~~~~~~~~  247 (293)
                      .+ |-.-++...
T Consensus       942 aVnWhaldgimh  953 (1034)
T KOG4190|consen  942 AVNWHALDGIMH  953 (1034)
T ss_pred             EeeehhcCCeee
Confidence            88 876665443

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.48  E-value=7e-11  Score=102.98  Aligned_cols=229  Identities=14%  Similarity=0.113  Sum_probs=133.4

Q ss_pred             cceeecCccccEEEEEECCCCCeEE---EEeCCCc--EEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEe
Q 022716           12 HSREYTGHKKKVHSVAWNCTGTKLA---SGSVDQT--ARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATAS   86 (293)
Q Consensus        12 ~~~~~~~h~~~v~~l~~s~~~~~l~---s~~~dg~--v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~   86 (293)
                      ..+.++.....+.+-+|||||+.++   +...+|.  |.+.+++...  ..   .+...........|+|++..++++..
T Consensus       176 ~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~--~~---~lt~~~g~~~~p~wSPDG~~Laf~s~  250 (428)
T PRK01029        176 NLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPA--GK---KILALQGNQLMPTFSPRKKLLAFISD  250 (428)
T ss_pred             CceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCC--ce---EeecCCCCccceEECCCCCEEEEEEC
Confidence            3445555566778889999998632   4444444  4555655321  11   12222333456789998766665554


Q ss_pred             CCC----eEEEEeCCCC---eeeeeeeec-CceEEEEEcCCCCEEEEEe-CCCeEEEEE--ccccceeeeecccceeeee
Q 022716           87 GDK----TVRLWDARSG---KCSQQAELS-GENINITYKPDGTHIAVGN-RDDELTILD--VRKFKPIHRRKFGYEVNEI  155 (293)
Q Consensus        87 ~d~----~i~vwd~~~~---~~~~~~~~~-~~~~~~~~~~~~~~l~~~~-~d~~i~l~d--~~~~~~~~~~~~~~~~~~v  155 (293)
                      .++    .+..|++..+   ......... +.....+|+|||+.|+..+ .++...+|.  +....              
T Consensus       251 ~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g--------------  316 (428)
T PRK01029        251 RYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG--------------  316 (428)
T ss_pred             CCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccc--------------
Confidence            333    3444676543   222222211 2334679999999888766 455444543  32110              


Q ss_pred             EEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCC---CcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecC
Q 022716          156 AWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSAD---SLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASE  232 (293)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d---~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~  232 (293)
                           +....+...........|+|+|+.|+..+.+   ..|.+||+..++.. .+......+....|+|||+.|+..+.
T Consensus       317 -----~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~-~Lt~~~~~~~~p~wSpDG~~L~f~~~  390 (428)
T PRK01029        317 -----QSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDY-QLTTSPENKESPSWAIDSLHLVYSAG  390 (428)
T ss_pred             -----cceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeE-EccCCCCCccceEECCCCCEEEEEEC
Confidence                 0001111222233456788999887765443   46999999887653 34433445678999999998865432


Q ss_pred             ---CCcEEEEEcCCCCEEEEEecCCCcceeEECCCC
Q 022716          233 ---DLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKY  265 (293)
Q Consensus       233 ---d~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~  265 (293)
                         ...|+++++..++..........+...+|+|..
T Consensus       391 ~~g~~~L~~vdl~~g~~~~Lt~~~g~~~~p~Ws~~~  426 (428)
T PRK01029        391 NSNESELYLISLITKKTRKIVIGSGEKRFPSWGAFP  426 (428)
T ss_pred             CCCCceEEEEECCCCCEEEeecCCCcccCceecCCC
Confidence               356889998877654444444557788999854

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.48  E-value=1.8e-09  Score=91.75  Aligned_cols=237  Identities=19%  Similarity=0.298  Sum_probs=145.7

Q ss_pred             ccEEEEEECCCCCeEEEEeC----CCcEEEeecCCCCCCceeEEE-eeCCcCCeeEEEEcCCCCCEEEEEe-CCCeEEEE
Q 022716           21 KKVHSVAWNCTGTKLASGSV----DQTARVWHIEPHGHGKVKDIE-LRGHADSVDQLCWDPKHADLIATAS-GDKTVRLW   94 (293)
Q Consensus        21 ~~v~~l~~s~~~~~l~s~~~----dg~v~iw~~~~~~~~~~~~~~-~~~h~~~i~~~~~~~~~~~~l~s~~-~d~~i~vw   94 (293)
                      .....++++|++++|.+...    +|.|..|++.... +....+. ....-..-..++++|++. +|+.+. .++.+.++
T Consensus        37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~-g~L~~~~~~~~~g~~p~~i~~~~~g~-~l~vany~~g~v~v~  114 (345)
T PF10282_consen   37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDT-GTLTLLNSVPSGGSSPCHIAVDPDGR-FLYVANYGGGSVSVF  114 (345)
T ss_dssp             SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTT-TEEEEEEEEEESSSCEEEEEECTTSS-EEEEEETTTTEEEEE
T ss_pred             CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCc-ceeEEeeeeccCCCCcEEEEEecCCC-EEEEEEccCCeEEEE
Confidence            45677889999999987766    5799999887542 2222221 111122234677888754 555554 59999999


Q ss_pred             eCCC-Ceeeee---ee-----------ecCceEEEEEcCCCCEEEEEeC-CCeEEEEEccccce-eeeecccceeeeeEE
Q 022716           95 DARS-GKCSQQ---AE-----------LSGENINITYKPDGTHIAVGNR-DDELTILDVRKFKP-IHRRKFGYEVNEIAW  157 (293)
Q Consensus        95 d~~~-~~~~~~---~~-----------~~~~~~~~~~~~~~~~l~~~~~-d~~i~l~d~~~~~~-~~~~~~~~~~~~v~~  157 (293)
                      ++.. +.....   ..           ...++.++.++|+++++++... ...|.++++..... +..      ...   
T Consensus       115 ~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~------~~~---  185 (345)
T PF10282_consen  115 PLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTP------VDS---  185 (345)
T ss_dssp             EECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEE------EEE---
T ss_pred             EccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEE------eec---
Confidence            9976 433222   11           1234567999999998888764 46889998865431 111      000   


Q ss_pred             ecCCCEEEEecCCCCEEEEEECCCCCEE-EEecCCCcEEEEeCC--CCE--EEEEeecc------CCCeeEEEEccCCCE
Q 022716          158 NMTGEMFFLTTGNAGCYCIAIDPMGRYF-AVGSADSLVSLWDIS--EML--CVRTFTKL------EWPVRTISFSHTGDY  226 (293)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~gs~d~~i~iwd~~--~~~--~~~~~~~~------~~~v~~l~~sp~~~~  226 (293)
                             .........-.++|+|+++++ ++.-.+++|.++++.  ++.  .+..+...      ......|+++|||++
T Consensus       186 -------~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~  258 (345)
T PF10282_consen  186 -------IKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRF  258 (345)
T ss_dssp             -------EECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSE
T ss_pred             -------cccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCE
Confidence                   011223345567888888765 455567889999887  442  22222221      125788999999999


Q ss_pred             EEEec-CCCcEEEEEcC--CCCE--EEEEecC-CCcceeEECCCCCeEEEEEcCC
Q 022716          227 IASAS-EDLFIDISNVH--TGRT--VHQIPCR-AAMNSVEWNPKYNLLAYAGDDK  275 (293)
Q Consensus       227 l~s~s-~d~~i~iw~~~--~~~~--~~~~~~~-~~i~~~~~sp~~~~la~~~~d~  275 (293)
                      |..+. .+..|.++++.  +++.  +..++.. ...+.++++|+|++|+++..+.
T Consensus       259 lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s  313 (345)
T PF10282_consen  259 LYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDS  313 (345)
T ss_dssp             EEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTT
T ss_pred             EEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCC
Confidence            86655 66789999983  3443  3344543 3478999999999999998654

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.48  E-value=5.1e-12  Score=106.50  Aligned_cols=162  Identities=20%  Similarity=0.269  Sum_probs=110.3

Q ss_pred             cccEEEEEECCCCC-eEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCC-
Q 022716           20 KKKVHSVAWNCTGT-KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDAR-   97 (293)
Q Consensus        20 ~~~v~~l~~s~~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~-   97 (293)
                      +..|+|+.|-|-++ .++.+-.+|.+.+||.....          +-+.+-..  ..++ .+.+.       |..|.-. 
T Consensus       219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~----------~~t~p~~~--~~k~-~~~f~-------i~t~ksk~  278 (636)
T KOG2394|consen  219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVC----------GATAPSYQ--ALKD-GDQFA-------ILTSKSKK  278 (636)
T ss_pred             ccceEEEEEEeCCCceEEEEEecCceEEeeccccc----------cCCCCccc--ccCC-CCeeE-------Eeeeeccc
Confidence            47899999988654 55667779999999874211          11111111  1122 22222       2222211 


Q ss_pred             CCeeeeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEE
Q 022716           98 SGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCI  176 (293)
Q Consensus        98 ~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  176 (293)
                      +...+..+. ..+.+...+|+|||++|++.+.||.++++|..+.+.+...+                    +-=+...|+
T Consensus       279 ~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mk--------------------SYFGGLLCv  338 (636)
T KOG2394|consen  279 TRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMK--------------------SYFGGLLCV  338 (636)
T ss_pred             cCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHH--------------------hhccceEEE
Confidence            112222222 34566679999999999999999999999987654332111                    111346799


Q ss_pred             EECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEc
Q 022716          177 AIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFS  221 (293)
Q Consensus       177 ~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s  221 (293)
                      +|+|||+++++|++|.-|.+|.+...+.+..-.+|..+|..|+|.
T Consensus       339 cWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFD  383 (636)
T KOG2394|consen  339 CWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFD  383 (636)
T ss_pred             EEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeec
Confidence            999999999999999999999999998888888999999999997

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.47  E-value=3.9e-12  Score=110.70  Aligned_cols=248  Identities=17%  Similarity=0.258  Sum_probs=166.1

Q ss_pred             cccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCC-----------ceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCC
Q 022716           20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHG-----------KVKDIELRGHADSVDQLCWDPKHADLIATASGD   88 (293)
Q Consensus        20 ~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~-----------~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d   88 (293)
                      ....+|++|+.+..++|.||.||.+++-.++.....           ......+.||+..|..+.|+.. .+.|-|...+
T Consensus        14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~-~QKLTtSDt~   92 (1189)
T KOG2041|consen   14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNEN-NQKLTTSDTS   92 (1189)
T ss_pred             CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccc-cccccccCCC
Confidence            457899999999999999999999999887643211           0112247899999999999865 4567888889


Q ss_pred             CeEEEEeCCCCeeeeeee---ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEE
Q 022716           89 KTVRLWDARSGKCSQQAE---LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFF  165 (293)
Q Consensus        89 ~~i~vwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  165 (293)
                      |.|.+|-+-.+.....+.   ..+-+.++.|..||..+.....||.+.+=.+........---+....            
T Consensus        93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~------------  160 (1189)
T KOG2041|consen   93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLA------------  160 (1189)
T ss_pred             ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchhecc------------
Confidence            999999987775433221   23456789999999999999999998876655432211100011111            


Q ss_pred             EecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCE-------E-EEE---eeccCCCeeEEEEc--------cCCCE
Q 022716          166 LTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEML-------C-VRT---FTKLEWPVRTISFS--------HTGDY  226 (293)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~-------~-~~~---~~~~~~~v~~l~~s--------p~~~~  226 (293)
                               -+.+++|.+.++.+-..|.+++||.+...       + +..   +....-.+..+.|.        |+...
T Consensus       161 ---------hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~  231 (1189)
T KOG2041|consen  161 ---------HVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPR  231 (1189)
T ss_pred             ---------ceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCE
Confidence                     24456777777777778899999865321       1 111   11111234445443        57788


Q ss_pred             EEEecCCCcEEEEEcCCCCEEEEEecCCCcceeEECCCCCeEEEEEcCCCCCC-CCcceEEEEe
Q 022716          227 IASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQ-ADEGVFRIYG  289 (293)
Q Consensus       227 l~s~s~d~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~d~~~~~-~~~~~~~~~~  289 (293)
                      ||.+-..|.+.|--...-...-.+.....+..+.|+++|..||.+|.+...-+ .+...+.+|+
T Consensus       232 lavcy~nGr~QiMR~eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys  295 (1189)
T KOG2041|consen  232 LAVCYANGRMQIMRSENDPEPVVVDTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS  295 (1189)
T ss_pred             EEEEEcCceehhhhhcCCCCCeEEecccEeecceecCCCcEEEEccCcccccCccccceEEEec
Confidence            99998888887665443333334444567889999999999999998765544 2223455553

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.47  E-value=1.4e-10  Score=101.83  Aligned_cols=191  Identities=14%  Similarity=0.142  Sum_probs=119.7

Q ss_pred             eeCCcCCeeEEEEcCCCCCEEEEEeCC--CeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEE-eCCC--eEEEEE
Q 022716           62 LRGHADSVDQLCWDPKHADLIATASGD--KTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVG-NRDD--ELTILD  136 (293)
Q Consensus        62 ~~~h~~~i~~~~~~~~~~~~l~s~~~d--~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~d~--~i~l~d  136 (293)
                      +..+...+....|+|++..++++...+  ..|.+||+.+++........+.....+|+|||+.++.. ..++  .|.++|
T Consensus       194 l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d  273 (430)
T PRK00178        194 LLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMD  273 (430)
T ss_pred             EecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEE
Confidence            345667788999999865444444333  46888999888655443344455568999999988754 3444  577788


Q ss_pred             ccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecC-CC--cEEEEeCCCCEEEEEeeccCC
Q 022716          137 VRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSA-DS--LVSLWDISEMLCVRTFTKLEW  213 (293)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~-d~--~i~iwd~~~~~~~~~~~~~~~  213 (293)
                      +.+........                     .........|+|+++.++..+. ++  .|.++|+..+... .+.....
T Consensus       274 ~~~~~~~~lt~---------------------~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~-~lt~~~~  331 (430)
T PRK00178        274 LASRQLSRVTN---------------------HPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE-RVTFVGN  331 (430)
T ss_pred             CCCCCeEEccc---------------------CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCC
Confidence            87654322111                     1111234567888887665543 33  5777787766532 2222222


Q ss_pred             CeeEEEEccCCCEEEEecCC-C--cEEEEEcCCCCEEEEEecCCCcceeEECCCCCeEEEEEcCC
Q 022716          214 PVRTISFSHTGDYIASASED-L--FIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDK  275 (293)
Q Consensus       214 ~v~~l~~sp~~~~l~s~s~d-~--~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~d~  275 (293)
                      ......|+|+|++|+..+.+ +  .|.++|+.+++. +.+..........|+|+|..++.++.++
T Consensus       332 ~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~-~~lt~~~~~~~p~~spdg~~i~~~~~~~  395 (430)
T PRK00178        332 YNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV-RILTDTSLDESPSVAPNGTMLIYATRQQ  395 (430)
T ss_pred             CccceEECCCCCEEEEEEccCCceEEEEEECCCCCE-EEccCCCCCCCceECCCCCEEEEEEecC
Confidence            23456899999999777643 3  488899888764 3333222334568999999999888653

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.46  E-value=1.2e-11  Score=99.10  Aligned_cols=248  Identities=17%  Similarity=0.322  Sum_probs=151.7

Q ss_pred             ccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCce-eEEEeeCCc------------CCeeEEEEcCCC-CCEEEE
Q 022716           19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKV-KDIELRGHA------------DSVDQLCWDPKH-ADLIAT   84 (293)
Q Consensus        19 h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~-~~~~~~~h~------------~~i~~~~~~~~~-~~~l~s   84 (293)
                      ....|.++.|+.+|.+||||..+|.|.++.-+....+.. ....++.|.            ..|+.+.|.+++ ...++.
T Consensus        24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl  103 (433)
T KOG1354|consen   24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL  103 (433)
T ss_pred             hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence            346799999999999999999999999997543221111 112334443            457788887654 345666


Q ss_pred             EeCCCeEEEEeCCCCeeee--------------------eee-----------------ecCceEEEEEcCCCCEEEEEe
Q 022716           85 ASGDKTVRLWDARSGKCSQ--------------------QAE-----------------LSGENINITYKPDGTHIAVGN  127 (293)
Q Consensus        85 ~~~d~~i~vwd~~~~~~~~--------------------~~~-----------------~~~~~~~~~~~~~~~~l~~~~  127 (293)
                      .+.|.+|++|.+.......                    ...                 +.-++.++.+..|+..++++ 
T Consensus       104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-  182 (433)
T KOG1354|consen  104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-  182 (433)
T ss_pred             ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-
Confidence            7899999999874321110                    000                 00112346666777666665 


Q ss_pred             CCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCC-CEEEEecCCCcEEEEeCCCCEE-E
Q 022716          128 RDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMG-RYFAVGSADSLVSLWDISEMLC-V  205 (293)
Q Consensus       128 ~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~gs~d~~i~iwd~~~~~~-~  205 (293)
                      .|-+|.+|.+.-.....        +.|...|..    +..-..-|++..|||.. +.++-.++.|+|++-|+++... .
T Consensus       183 DdLRINLWnlei~d~sF--------nIVDIKP~n----mEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd  250 (433)
T KOG1354|consen  183 DDLRINLWNLEIIDQSF--------NIVDIKPAN----MEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCD  250 (433)
T ss_pred             cceeeeeccccccCCce--------eEEEccccC----HHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhc
Confidence            37788888875321100        011111100    00000124566788864 6788888999999999984311 0


Q ss_pred             ---EEee------------ccCCCeeEEEEccCCCEEEEecCC-CcEEEEEcC-CCCEEEEEecCC-------------C
Q 022716          206 ---RTFT------------KLEWPVRTISFSHTGDYIASASED-LFIDISNVH-TGRTVHQIPCRA-------------A  255 (293)
Q Consensus       206 ---~~~~------------~~~~~v~~l~~sp~~~~l~s~s~d-~~i~iw~~~-~~~~~~~~~~~~-------------~  255 (293)
                         +.+.            +.-..|..+.|+++|+|+++  .| .+|++||+. ..+.+..++.+.             .
T Consensus       251 ~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryils--RDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~  328 (433)
T KOG1354|consen  251 AHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILS--RDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDA  328 (433)
T ss_pred             chhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEE--eccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccc
Confidence               1111            11234788999999999987  45 679999995 345555554221             1


Q ss_pred             c---ceeEECCCCCeEEEEEcCCCCCCCCcceEEEEe
Q 022716          256 M---NSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYG  289 (293)
Q Consensus       256 i---~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~  289 (293)
                      |   ..+.||.++.++.+||-..        +||+|+
T Consensus       329 IfdKFec~~sg~~~~v~TGsy~n--------~frvf~  357 (433)
T KOG1354|consen  329 IFDKFECSWSGNDSYVMTGSYNN--------VFRVFN  357 (433)
T ss_pred             hhheeEEEEcCCcceEecccccc--------eEEEec
Confidence            2   2589999999999999764        556665

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.45  E-value=1.8e-13  Score=113.19  Aligned_cols=174  Identities=12%  Similarity=0.107  Sum_probs=140.7

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCC--------EEEE----------ecCC
Q 022716          109 GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGE--------MFFL----------TTGN  170 (293)
Q Consensus       109 ~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~--------~~~~----------~~~~  170 (293)
                      ..++.+.++.+|++++.|+..|.+-.+|..+.+...++.....|.++.|-....        ..++          .-..
T Consensus       130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtElHClk~~  209 (545)
T KOG1272|consen  130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTELHCLKRH  209 (545)
T ss_pred             cCCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCCcEEeehhhc
Confidence            346788999999999999999999999999988877776666666666643322        2222          2222


Q ss_pred             CCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEE-E
Q 022716          171 AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVH-Q  249 (293)
Q Consensus       171 ~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~-~  249 (293)
                      ..+..+.|-|.--+|++++..|-++.-|+..|..+..+..-..++..++-+|-+..+-+|...|+|.+|+......+- -
T Consensus       210 ~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKi  289 (545)
T KOG1272|consen  210 IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKI  289 (545)
T ss_pred             CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHH
Confidence            345567888988899999999999999999998888887777889999999999999999999999999998876543 4


Q ss_pred             EecCCCcceeEECCCCCeEEEEEcCCCCCCCCc
Q 022716          250 IPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADE  282 (293)
Q Consensus       250 ~~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~  282 (293)
                      +.++++|++|++.|+|.|+|++|.|+.+.+||-
T Consensus       290 LcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDl  322 (545)
T KOG1272|consen  290 LCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDL  322 (545)
T ss_pred             HhcCCCcceEEECCCCcEEeecccccceeEeee
Confidence            567889999999999999999999975555443

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.44  E-value=2e-10  Score=100.89  Aligned_cols=190  Identities=13%  Similarity=0.127  Sum_probs=116.3

Q ss_pred             eCCcCCeeEEEEcCCCCCEEEEEeCCC--eEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEE-eCCCe--EEEEEc
Q 022716           63 RGHADSVDQLCWDPKHADLIATASGDK--TVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVG-NRDDE--LTILDV  137 (293)
Q Consensus        63 ~~h~~~i~~~~~~~~~~~~l~s~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~d~~--i~l~d~  137 (293)
                      ..+...+....|+|++..++++...++  .|.+||+.+++........+.....+|+|||+.++.. ..++.  |.++|+
T Consensus       214 ~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl  293 (448)
T PRK04792        214 LRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDI  293 (448)
T ss_pred             ecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEEC
Confidence            345667888899998765555444443  5888898887654333334444568999999988754 45554  667777


Q ss_pred             cccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecC-CC--cEEEEeCCCCEEEEEeeccCCC
Q 022716          138 RKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSA-DS--LVSLWDISEMLCVRTFTKLEWP  214 (293)
Q Consensus       138 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~-d~--~i~iwd~~~~~~~~~~~~~~~~  214 (293)
                      .+.+..+..                     .+.......+|+|+++.++..+. ++  .|.++|+..++.. .+......
T Consensus       294 ~tg~~~~lt---------------------~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~-~Lt~~g~~  351 (448)
T PRK04792        294 ATKALTRIT---------------------RHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVS-RLTFEGEQ  351 (448)
T ss_pred             CCCCeEECc---------------------cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EEecCCCC
Confidence            654432211                     11112234677888887765543 33  4666677766533 22222222


Q ss_pred             eeEEEEccCCCEEEEecC-CC--cEEEEEcCCCCEEEEEecCCCcceeEECCCCCeEEEEEcCC
Q 022716          215 VRTISFSHTGDYIASASE-DL--FIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDK  275 (293)
Q Consensus       215 v~~l~~sp~~~~l~s~s~-d~--~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~d~  275 (293)
                      ....+|+|||++|+..+. ++  .|.++|+.+++.. .+..........|+|+|.+|+++..++
T Consensus       352 ~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~~~d~~ps~spdG~~I~~~~~~~  414 (448)
T PRK04792        352 NLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTSTRLDESPSVAPNGTMVIYSTTYQ  414 (448)
T ss_pred             CcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCCCCCCCceECCCCCEEEEEEecC
Confidence            345689999999877654 34  3566787776542 332222233568999999998887653

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.43  E-value=2.4e-10  Score=99.62  Aligned_cols=192  Identities=16%  Similarity=0.095  Sum_probs=117.6

Q ss_pred             CcCCeeEEEEcCCCCC--EEEEEeCC--CeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeC-CC----eEEEE
Q 022716           65 HADSVDQLCWDPKHAD--LIATASGD--KTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNR-DD----ELTIL  135 (293)
Q Consensus        65 h~~~i~~~~~~~~~~~--~l~s~~~d--~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~----~i~l~  135 (293)
                      ....+..-.|+|++..  +++....+  ..|.+.++..++........+.....+|+|||+.|+..+. ++    .+..|
T Consensus       183 ~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~  262 (428)
T PRK01029        183 EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSF  262 (428)
T ss_pred             CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEe
Confidence            3444566789998765  33344444  3577778888776555556666667899999998887653 22    22334


Q ss_pred             EccccceeeeecccceeeeeEEecCCCEEEEecCC-CCEEEEEECCCCCEEEEec-CCCcEEEE--eCCC-CEEEEEeec
Q 022716          136 DVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGN-AGCYCIAIDPMGRYFAVGS-ADSLVSLW--DISE-MLCVRTFTK  210 (293)
Q Consensus       136 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~gs-~d~~i~iw--d~~~-~~~~~~~~~  210 (293)
                      ++.....                  +....+.... ......+|+|||+.|+..+ .+|...||  ++.. +.....+..
T Consensus       263 ~~~~g~~------------------g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~  324 (428)
T PRK01029        263 SLETGAI------------------GKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTK  324 (428)
T ss_pred             ecccCCC------------------CcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEecc
Confidence            5433100                  0001111111 1224568899998777665 45655555  4432 222344444


Q ss_pred             cCCCeeEEEEccCCCEEEEecCC---CcEEEEEcCCCCEEEEEecCCCcceeEECCCCCeEEEEEcC
Q 022716          211 LEWPVRTISFSHTGDYIASASED---LFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDD  274 (293)
Q Consensus       211 ~~~~v~~l~~sp~~~~l~s~s~d---~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~d  274 (293)
                      ....+....|||||++|+..+.+   ..|.+||+.+++..........+....|+|+|+.|+..+.+
T Consensus       325 ~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~  391 (428)
T PRK01029        325 KYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGN  391 (428)
T ss_pred             CCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECC
Confidence            44566788999999998876543   45899999888754322223356789999999998877654

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.43  E-value=2.5e-09  Score=89.48  Aligned_cols=234  Identities=13%  Similarity=0.115  Sum_probs=148.4

Q ss_pred             CcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEe---------CCCeEEEEeCCCCeeeeeeeecCce-
Q 022716           42 QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATAS---------GDKTVRLWDARSGKCSQQAELSGEN-  111 (293)
Q Consensus        42 g~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~---------~d~~i~vwd~~~~~~~~~~~~~~~~-  111 (293)
                      ++|.+.|.+...  ....+. .+.....  + ++|++..++++.+         .+..|.+||..+.+....+.....+ 
T Consensus        27 ~~v~ViD~~~~~--v~g~i~-~G~~P~~--~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~  100 (352)
T TIGR02658        27 TQVYTIDGEAGR--VLGMTD-GGFLPNP--V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPR  100 (352)
T ss_pred             ceEEEEECCCCE--EEEEEE-ccCCCce--e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCch
Confidence            889998887532  111111 1222222  3 7888766666667         6899999999999888777664443 


Q ss_pred             -------EEEEEcCCCCEEEEEe-C-CCeEEEEEccccceeeeecccceeeeeEE--------ecCCCEEEEecCCC---
Q 022716          112 -------INITYKPDGTHIAVGN-R-DDELTILDVRKFKPIHRRKFGYEVNEIAW--------NMTGEMFFLTTGNA---  171 (293)
Q Consensus       112 -------~~~~~~~~~~~l~~~~-~-d~~i~l~d~~~~~~~~~~~~~~~~~~v~~--------~~~~~~~~~~~~~~---  171 (293)
                             ..++++|||+++++.. . ++.+.+.|+.+.+.+.+...+.....+..        ..++....+.....   
T Consensus       101 ~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~  180 (352)
T TIGR02658       101 FLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNP  180 (352)
T ss_pred             hhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCce
Confidence                   3789999999998776 4 68999999999887776654332222222        22333222111110   


Q ss_pred             CEEE--E------------EECC-CCCEEEEecCCCcEEEEeCCC-----CEEEEEeecc-------CCCeeEEEEccCC
Q 022716          172 GCYC--I------------AIDP-MGRYFAVGSADSLVSLWDISE-----MLCVRTFTKL-------EWPVRTISFSHTG  224 (293)
Q Consensus       172 ~~~~--~------------~~~~-~~~~l~~gs~d~~i~iwd~~~-----~~~~~~~~~~-------~~~v~~l~~sp~~  224 (293)
                      ....  +            .+.+ +++++.+... |+|.+.|+..     ......+...       ...+.-++++|++
T Consensus       181 ~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg  259 (352)
T TIGR02658       181 KIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRAR  259 (352)
T ss_pred             EEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCC
Confidence            0000  0            1123 7777766666 9999999533     2222222111       1224459999999


Q ss_pred             CEEEEec----------CCCcEEEEEcCCCCEEEEEecCCCcceeEECCCCC-eEEEEEc-CCCCCCCCc
Q 022716          225 DYIASAS----------EDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYN-LLAYAGD-DKNKYQADE  282 (293)
Q Consensus       225 ~~l~s~s----------~d~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~-~la~~~~-d~~~~~~~~  282 (293)
                      +.+....          ..+.|.++|..+++.+..+.....+..++++|+++ +|.++.. ++.+.+.|-
T Consensus       260 ~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~  329 (352)
T TIGR02658       260 DRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDA  329 (352)
T ss_pred             CEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEEC
Confidence            9887642          12579999999999999998888899999999999 6665553 444444443

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.42  E-value=1.2e-10  Score=98.72  Aligned_cols=257  Identities=19%  Similarity=0.289  Sum_probs=160.1

Q ss_pred             EEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeC-----------CCeE
Q 022716           23 VHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASG-----------DKTV   91 (293)
Q Consensus        23 v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~-----------d~~i   91 (293)
                      =+-+.|||-|.+|+|=-..| |.+|-=.+.  ..   +..-.|. .|..+.|+|. ..+|+|=+.           ...+
T Consensus       213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f--~r---~~RF~Hp-~Vq~idfSP~-EkYLVT~s~~p~~~~~~d~e~~~l  284 (698)
T KOG2314|consen  213 ETYVRWSPKGTYLVTFHKQG-IALWGGESF--DR---IQRFYHP-GVQFIDFSPN-EKYLVTYSPEPIIVEEDDNEGQQL  284 (698)
T ss_pred             eeeEEecCCceEEEEEeccc-eeeecCccH--HH---HHhccCC-CceeeecCCc-cceEEEecCCccccCcccCCCceE
Confidence            36789999999999987766 678842211  11   1122454 4788889986 567887654           2568


Q ss_pred             EEEeCCCCeeeeeeee--cCce-E-EEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecc-cceeeeeEEecCCCEEEE
Q 022716           92 RLWDARSGKCSQQAEL--SGEN-I-NITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF-GYEVNEIAWNMTGEMFFL  166 (293)
Q Consensus        92 ~vwd~~~~~~~~~~~~--~~~~-~-~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~  166 (293)
                      +|||+.+|.....+..  .... . -..|+.|+++++.-.. +.|.+++..++.++..... -..++.+.|+|.+..+..
T Consensus       285 ~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAY  363 (698)
T KOG2314|consen  285 IIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAY  363 (698)
T ss_pred             EEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceEEE
Confidence            9999999987776654  2221 1 3679999999987765 6788888776554433322 234666777776655442


Q ss_pred             ecCC----------------------------------------------------------------------------
Q 022716          167 TTGN----------------------------------------------------------------------------  170 (293)
Q Consensus       167 ~~~~----------------------------------------------------------------------------  170 (293)
                      ....                                                                            
T Consensus       364 wtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~ve  443 (698)
T KOG2314|consen  364 WTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVE  443 (698)
T ss_pred             EcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeee
Confidence            2110                                                                            


Q ss_pred             --CCEEEEEECCCCCEEEEecC---CCcEEEEeCCC-CEEEEEeecc-CCCeeEEEEccCCCEEEEe---cCCCcEEEEE
Q 022716          171 --AGCYCIAIDPMGRYFAVGSA---DSLVSLWDISE-MLCVRTFTKL-EWPVRTISFSHTGDYIASA---SEDLFIDISN  240 (293)
Q Consensus       171 --~~~~~~~~~~~~~~l~~gs~---d~~i~iwd~~~-~~~~~~~~~~-~~~v~~l~~sp~~~~l~s~---s~d~~i~iw~  240 (293)
                        ..+...+|.|.|+.+++-+.   ..++.+|..++ .......+.. ....+.+.|+|.|++++.+   |..|.+.++|
T Consensus       444 lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D  523 (698)
T KOG2314|consen  444 LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYD  523 (698)
T ss_pred             cchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEe
Confidence              11334577788876544332   35677777652 2111111111 2356889999999998776   4578899999


Q ss_pred             cCCCCE-EEEEecCCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEee
Q 022716          241 VHTGRT-VHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGF  290 (293)
Q Consensus       241 ~~~~~~-~~~~~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~  290 (293)
                      ..-... ....+.+-..+.+.|.|.|.|+++++.-..-.  .+.-.|||.|
T Consensus       524 ~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wrhk--~d~GYri~tf  572 (698)
T KOG2314|consen  524 TDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWRHK--VDNGYRIFTF  572 (698)
T ss_pred             cchhhhhhccCccccccccceECCCCCEEEEeeehhhhc--cccceEEEEe
Confidence            863221 12233445678899999999999998643111  1122477765

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.41  E-value=9.6e-13  Score=116.05  Aligned_cols=223  Identities=22%  Similarity=0.349  Sum_probs=158.1

Q ss_pred             eeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEE
Q 022716           14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL   93 (293)
Q Consensus        14 ~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~v   93 (293)
                      ...-||.+.|+.++.+....+++++|.|..|++|.+...   . ....+.+|++.|++++|+|..     +.+.||++++
T Consensus       226 As~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~---~-pvsvLrghtgavtaiafsP~~-----sss~dgt~~~  296 (1113)
T KOG0644|consen  226 ASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDG---A-PVSVLRGHTGAVTAIAFSPRA-----SSSDDGTCRI  296 (1113)
T ss_pred             ccCCCCccccchhccchhhhhhhhcccCceEEEEecCCC---c-hHHHHhccccceeeeccCccc-----cCCCCCceEe
Confidence            456799999999999999999999999999999988642   1 122478999999999999853     6788999999


Q ss_pred             EeCCCCeeee-----eeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccc-----eeee-ec---------ccceee
Q 022716           94 WDARSGKCSQ-----QAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFK-----PIHR-RK---------FGYEVN  153 (293)
Q Consensus        94 wd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~-----~~~~-~~---------~~~~~~  153 (293)
                      ||.+-.....     .+.....+.++.|...+..+++++.|++-..|.+....     .... ..         -...+.
T Consensus       297 wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~  376 (1113)
T KOG0644|consen  297 WDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHR  376 (1113)
T ss_pred             ccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeE
Confidence            9987221111     12223445566777778888999988887776543211     0000 00         011233


Q ss_pred             eeEEecC-CCEE-EEecCCCCEEEEEECCCCC-EEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEe
Q 022716          154 EIAWNMT-GEMF-FLTTGNAGCYCIAIDPMGR-YFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASA  230 (293)
Q Consensus       154 ~v~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~-~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~  230 (293)
                      .+.|+.. +.+. ....+....+.+.+||-+. +..+++.||...|||+..+.+++....-...+...+||++|+.++..
T Consensus       377 ~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~ls  456 (1113)
T KOG0644|consen  377 LCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALS  456 (1113)
T ss_pred             eeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecC
Confidence            3455542 2111 1234556788899999764 56788999999999999887776654445678888999999999998


Q ss_pred             cCCCcEEEEEcCCCC
Q 022716          231 SEDLFIDISNVHTGR  245 (293)
Q Consensus       231 s~d~~i~iw~~~~~~  245 (293)
                      ..-|.++|.....++
T Consensus       457 d~hgql~i~g~gqs~  471 (1113)
T KOG0644|consen  457 DDHGQLYILGTGQSK  471 (1113)
T ss_pred             CCCCceEEeccCCCc
Confidence            888999999876554

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.37  E-value=1.2e-10  Score=99.22  Aligned_cols=219  Identities=15%  Similarity=0.193  Sum_probs=130.6

Q ss_pred             CCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeeeecCceEEEEE-cCCCCEEEEEeCCCeEEEEE------
Q 022716           64 GHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITY-KPDGTHIAVGNRDDELTILD------  136 (293)
Q Consensus        64 ~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~d~~i~l~d------  136 (293)
                      .|....+.+..+|++.-+++||..-..|++||+.+-.....-.+...++.+.. +.|-..++.-..|..|-+..      
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy  128 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY  128 (703)
T ss_pred             CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence            46677888999998877788888899999999876544333333444433322 22212222222344333221      


Q ss_pred             -ccccceeeeecc---cceeee-------eEEecC-CCEE-EEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCE
Q 022716          137 -VRKFKPIHRRKF---GYEVNE-------IAWNMT-GEMF-FLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEML  203 (293)
Q Consensus       137 -~~~~~~~~~~~~---~~~~~~-------v~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~  203 (293)
                       ++-...-+...+   ..++..       ..++.. |..+ -+....+.+.++.+++...+|++|+.+|.|..||.+...
T Consensus       129 ~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ks  208 (703)
T KOG2321|consen  129 RTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKS  208 (703)
T ss_pred             eeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhh
Confidence             111100000000   000000       001111 1100 012223567889999999999999999999999998765


Q ss_pred             EEEEee------ccCC-----CeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEec--CCCcceeEECCCCCeEEE
Q 022716          204 CVRTFT------KLEW-----PVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPC--RAAMNSVEWNPKYNLLAY  270 (293)
Q Consensus       204 ~~~~~~------~~~~-----~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~--~~~i~~~~~sp~~~~la~  270 (293)
                      .+.++.      .|..     .|+++.|+-+|-.++.|..+|.+.|||+.+.+.+....+  ..+|..+.|.+.+.+=..
T Consensus       209 rv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v  288 (703)
T KOG2321|consen  209 RVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKV  288 (703)
T ss_pred             hheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceE
Confidence            444432      2222     399999999999999999999999999999887665543  558999999887433333


Q ss_pred             EEcC-CCCCCCCc
Q 022716          271 AGDD-KNKYQADE  282 (293)
Q Consensus       271 ~~~d-~~~~~~~~  282 (293)
                      .++| .-+.+|++
T Consensus       289 ~S~Dk~~~kiWd~  301 (703)
T KOG2321|consen  289 VSMDKRILKIWDE  301 (703)
T ss_pred             EecchHHhhhccc
Confidence            3333 33444444

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.36  E-value=9.4e-10  Score=93.77  Aligned_cols=171  Identities=20%  Similarity=0.252  Sum_probs=119.6

Q ss_pred             EEEEeCCCeEEEEeCCCCeeeeeeeecCc-eEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecC
Q 022716           82 IATASGDKTVRLWDARSGKCSQQAELSGE-NINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMT  160 (293)
Q Consensus        82 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~  160 (293)
                      +++-..++.|.+.|..+.+.+..+...+. ...+.++|||+++.+.+.|+.+.++|+.+.+.+.+...+..         
T Consensus         9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~---------   79 (369)
T PF02239_consen    9 YVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGN---------   79 (369)
T ss_dssp             EEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSE---------
T ss_pred             EEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCC---------
Confidence            34566789999999999888888876554 45678999999999999999999999999887766554433         


Q ss_pred             CCEEEEecCCCCEEEEEECCCCCEEEEec-CCCcEEEEeCCCCEEEEEeecc-------CCCeeEEEEccCCCEEEEec-
Q 022716          161 GEMFFLTTGNAGCYCIAIDPMGRYFAVGS-ADSLVSLWDISEMLCVRTFTKL-------EWPVRTISFSHTGDYIASAS-  231 (293)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~l~~gs-~d~~i~iwd~~~~~~~~~~~~~-------~~~v~~l~~sp~~~~l~s~s-  231 (293)
                                  ...++++++|++++++. .++.+.++|.++.+.++.+...       ...+.++-.+|....++..- 
T Consensus        80 ------------~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lk  147 (369)
T PF02239_consen   80 ------------PRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLK  147 (369)
T ss_dssp             ------------EEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEET
T ss_pred             ------------cceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEc
Confidence                        34678889999988775 6899999999999888876543       23577888889888555554 


Q ss_pred             CCCcEEEEEcCCCCEE--EEEecCCCcceeEECCCCCeEEEEEc
Q 022716          232 EDLFIDISNVHTGRTV--HQIPCRAAMNSVEWNPKYNLLAYAGD  273 (293)
Q Consensus       232 ~d~~i~iw~~~~~~~~--~~~~~~~~i~~~~~sp~~~~la~~~~  273 (293)
                      +-+.|.+-|....+.+  ..+..........|+|++.++..+..
T Consensus       148 d~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~  191 (369)
T PF02239_consen  148 DTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAAN  191 (369)
T ss_dssp             TTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEG
T ss_pred             cCCeEEEEEeccccccceeeecccccccccccCcccceeeeccc
Confidence            4588888887766543  34555556778999999998877654

...

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.34  E-value=4.6e-12  Score=107.12  Aligned_cols=171  Identities=21%  Similarity=0.322  Sum_probs=122.1

Q ss_pred             EEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeee--ecCceEEEEEcC--CCCEEEEEeCCCeEEEE
Q 022716           60 IELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAE--LSGENINITYKP--DGTHIAVGNRDDELTIL  135 (293)
Q Consensus        60 ~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~--~~~~~~~~~~~~--~~~~l~~~~~d~~i~l~  135 (293)
                      ..+.||++.|+++.|+.+ +.+|+||+.|-.+.|||.-..+.+..+.  +...+.++.|-|  +.+.+++|..|..|+++
T Consensus        44 ~eL~GH~GCVN~LeWn~d-G~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf  122 (758)
T KOG1310|consen   44 AELTGHTGCVNCLEWNAD-GELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF  122 (758)
T ss_pred             hhhccccceecceeecCC-CCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence            357899999999999976 5799999999999999988766666554  334566888887  45789999999999999


Q ss_pred             EccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCC-CEEEEecCCCcEEEEeCCCCEE-------EEE
Q 022716          136 DVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMG-RYFAVGSADSLVSLWDISEMLC-------VRT  207 (293)
Q Consensus       136 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~gs~d~~i~iwd~~~~~~-------~~~  207 (293)
                      |+...+.... -++...         ......++-..+..|+.-|++ ..+.++++||+|+-+|++....       ...
T Consensus       123 dl~~~~~~~~-d~~~~~---------~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~  192 (758)
T KOG1310|consen  123 DLDSSKEGGM-DHGMEE---------TTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSI  192 (758)
T ss_pred             eccccccccc-ccCccc---------hhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHH
Confidence            9875331110 011111         112233455566678888888 7789999999999999975211       111


Q ss_pred             eec-c--CCCeeEEEEccCC-CEEEEecCCCcEEEEEc
Q 022716          208 FTK-L--EWPVRTISFSHTG-DYIASASEDLFIDISNV  241 (293)
Q Consensus       208 ~~~-~--~~~v~~l~~sp~~-~~l~s~s~d~~i~iw~~  241 (293)
                      +.. +  --...++.++|.. .+||.|+.|-++++||.
T Consensus       193 l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~  230 (758)
T KOG1310|consen  193 LVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDR  230 (758)
T ss_pred             HHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhh
Confidence            111 1  1246778999976 57899999999999994

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.33  E-value=1.1e-09  Score=93.23  Aligned_cols=115  Identities=20%  Similarity=0.282  Sum_probs=84.9

Q ss_pred             CCEEEEEECCCCCEEEE--ecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEec---CCCcEEEEEcCCCC
Q 022716          171 AGCYCIAIDPMGRYFAV--GSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASAS---EDLFIDISNVHTGR  245 (293)
Q Consensus       171 ~~~~~~~~~~~~~~l~~--gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s---~d~~i~iw~~~~~~  245 (293)
                      ++|.++.|+|+++.+++  |-+--++.|||++-. .+..+  .+.+=+++-|+|.|++++.++   .-|.+.|||+.+.+
T Consensus       271 GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~-~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K  347 (566)
T KOG2315|consen  271 GPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK-PVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRK  347 (566)
T ss_pred             CCceEEEECCCCCEEEEEEecccceEEEEcCCCC-EeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchh
Confidence            56788999999987654  556778999997543 34333  446778899999999998876   45889999999977


Q ss_pred             EEEEEecCCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeee
Q 022716          246 TVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE  291 (293)
Q Consensus       246 ~~~~~~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~  291 (293)
                      ++-.+... .-+-++|+|+|.+|.++...=-+  +.+--+|||++.
T Consensus       348 ~i~~~~a~-~tt~~eW~PdGe~flTATTaPRl--rvdNg~Kiwhyt  390 (566)
T KOG2315|consen  348 LIAKFKAA-NTTVFEWSPDGEYFLTATTAPRL--RVDNGIKIWHYT  390 (566)
T ss_pred             hccccccC-CceEEEEcCCCcEEEEEeccccE--EecCCeEEEEec
Confidence            77665432 34568999999999999865322  233447888874

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.32  E-value=1.7e-08  Score=85.89  Aligned_cols=230  Identities=17%  Similarity=0.216  Sum_probs=138.6

Q ss_pred             ccEEEEEECCCCCeEEEEeC-CCcEEEeecCCCCCCceeEEEe--e--------CCcCCeeEEEEcCCCCCEEEEEeCCC
Q 022716           21 KKVHSVAWNCTGTKLASGSV-DQTARVWHIEPHGHGKVKDIEL--R--------GHADSVDQLCWDPKHADLIATASGDK   89 (293)
Q Consensus        21 ~~v~~l~~s~~~~~l~s~~~-dg~v~iw~~~~~~~~~~~~~~~--~--------~h~~~i~~~~~~~~~~~~l~s~~~d~   89 (293)
                      .....++++|++++|+++.. +|.|.++++...+.........  .        .-.....++.++|++..++++.-...
T Consensus        87 ~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D  166 (345)
T PF10282_consen   87 SSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGAD  166 (345)
T ss_dssp             SCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTT
T ss_pred             CCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCC
Confidence            45567899999999998875 8999999998642111111011  1        11234678899998655555555567


Q ss_pred             eEEEEeCCCCe--eee--e--eeecCceEEEEEcCCCCEEEEEe-CCCeEEEEEccccc-eeeeecccceeeeeEEecCC
Q 022716           90 TVRLWDARSGK--CSQ--Q--AELSGENINITYKPDGTHIAVGN-RDDELTILDVRKFK-PIHRRKFGYEVNEIAWNMTG  161 (293)
Q Consensus        90 ~i~vwd~~~~~--~~~--~--~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~l~d~~~~~-~~~~~~~~~~~~~v~~~~~~  161 (293)
                      .|.+|+++...  ...  .  ......+..++|+|+++++.+.. .+++|.++++.... .....      ..+.--+.+
T Consensus       167 ~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~------~~~~~~~~~  240 (345)
T PF10282_consen  167 RVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEI------QTISTLPEG  240 (345)
T ss_dssp             EEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEE------EEEESCETT
T ss_pred             EEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEE------EEeeecccc
Confidence            89999987654  322  1  22345678899999999887665 47889999887211 11110      000000000


Q ss_pred             CEEEEecCCCCEEEEEECCCCCEEEEec-CCCcEEEEeCC--CC--EEEEEeeccCCCeeEEEEccCCCEEEEec-CCCc
Q 022716          162 EMFFLTTGNAGCYCIAIDPMGRYFAVGS-ADSLVSLWDIS--EM--LCVRTFTKLEWPVRTISFSHTGDYIASAS-EDLF  235 (293)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~l~~gs-~d~~i~iwd~~--~~--~~~~~~~~~~~~v~~l~~sp~~~~l~s~s-~d~~  235 (293)
                           ..+......|+++|++++|.++. .+++|.+|++.  ++  ..+..+.......+.++++|+|++|+.+. .++.
T Consensus       241 -----~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~  315 (345)
T PF10282_consen  241 -----FTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNT  315 (345)
T ss_dssp             -----SCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTE
T ss_pred             -----ccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCe
Confidence                 00112456789999999876655 57789999983  22  33334433344589999999999998776 5677


Q ss_pred             EEEEEc--CCCCEEEEE--ecCCCcceeEE
Q 022716          236 IDISNV--HTGRTVHQI--PCRAAMNSVEW  261 (293)
Q Consensus       236 i~iw~~--~~~~~~~~~--~~~~~i~~~~~  261 (293)
                      |.++++  ++|.+...-  ..-....||.|
T Consensus       316 v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f  345 (345)
T PF10282_consen  316 VSVFDIDPDTGKLTPVGSSVPIPSPVCIVF  345 (345)
T ss_dssp             EEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred             EEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence            888876  456543322  12233455655

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.31  E-value=1.1e-09  Score=93.16  Aligned_cols=218  Identities=20%  Similarity=0.321  Sum_probs=145.0

Q ss_pred             ccccEEEEEECCCC--CeEEE-----EeCCCcEEEeecCCCCCCcee-EEEeeCCcCCeeEEEEcCCCCCEEEEEeC--C
Q 022716           19 HKKKVHSVAWNCTG--TKLAS-----GSVDQTARVWHIEPHGHGKVK-DIELRGHADSVDQLCWDPKHADLIATASG--D   88 (293)
Q Consensus        19 h~~~v~~l~~s~~~--~~l~s-----~~~dg~v~iw~~~~~~~~~~~-~~~~~~h~~~i~~~~~~~~~~~~l~s~~~--d   88 (293)
                      |...|+.+++||-+  ..+|+     +|.=..||||........... ...+. -.+.| .+.|++.+..+|+-++.  |
T Consensus       164 ~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFF-kadkv-qm~WN~~gt~LLvLastdVD  241 (566)
T KOG2315|consen  164 SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFF-KADKV-QMKWNKLGTALLVLASTDVD  241 (566)
T ss_pred             eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhcccc-cccee-EEEeccCCceEEEEEEEeec
Confidence            56789999999863  34443     455678999987521111110 01111 11222 45788776666555544  3


Q ss_pred             ---------CeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEe--CCCeEEEEEccccceeeeecccceeeeeEE
Q 022716           89 ---------KTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGN--RDDELTILDVRKFKPIHRRKFGYEVNEIAW  157 (293)
Q Consensus        89 ---------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~  157 (293)
                               .++++.+++...+...+...+++.++.|+|+++.++++.  --.++.++|++.. ++..            
T Consensus       242 ktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~-~v~d------------  308 (566)
T KOG2315|consen  242 KTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK-PVFD------------  308 (566)
T ss_pred             CCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC-EeEe------------
Confidence                     357777777556666666678999999999999887765  3568889988752 2221            


Q ss_pred             ecCCCEEEEecCCCCEEEEEECCCCCEEEEecC---CCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecC--
Q 022716          158 NMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSA---DSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASE--  232 (293)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~---d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~--  232 (293)
                                ...++-.++-|+|.|++++.++-   .|.+.+||..+.+++..+...  .-+...|+|||++++|+..  
T Consensus       309 ----------f~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~--~tt~~eW~PdGe~flTATTaP  376 (566)
T KOG2315|consen  309 ----------FPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAA--NTTVFEWSPDGEYFLTATTAP  376 (566)
T ss_pred             ----------CCCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccC--CceEEEEcCCCcEEEEEeccc
Confidence                      22333456778888888777654   578999999997777665432  3566889999999988864  


Q ss_pred             ----CCcEEEEEcCCCCEEEEEecCCCcceeEECCC
Q 022716          233 ----DLFIDISNVHTGRTVHQIPCRAAMNSVEWNPK  264 (293)
Q Consensus       233 ----d~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~  264 (293)
                          |+-++||+. +|..++.....+..-.++|-|-
T Consensus       377 RlrvdNg~Kiwhy-tG~~l~~~~f~sEL~qv~W~P~  411 (566)
T KOG2315|consen  377 RLRVDNGIKIWHY-TGSLLHEKMFKSELLQVEWRPF  411 (566)
T ss_pred             cEEecCCeEEEEe-cCceeehhhhhHhHhheeeeec
Confidence                788999998 6777765544445777888763

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.29  E-value=2.1e-10  Score=103.68  Aligned_cols=180  Identities=16%  Similarity=0.132  Sum_probs=136.3

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCeeeeeeeecCceE-----EEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceee
Q 022716           79 ADLIATASGDKTVRLWDARSGKCSQQAELSGENI-----NITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVN  153 (293)
Q Consensus        79 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~  153 (293)
                      ..+++.+..+..+.+||...+.............     -+.++++.-++++|+.-+.+.+|+....+            
T Consensus        99 ~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn------------  166 (967)
T KOG0974|consen   99 NKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN------------  166 (967)
T ss_pred             cceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC------------
Confidence            3467777888888999987765544433332221     23456666788999999999999875211            


Q ss_pred             eeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEE-EeeccCCCeeEEEEccCCCEEEEecC
Q 022716          154 EIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVR-TFTKLEWPVRTISFSHTGDYIASASE  232 (293)
Q Consensus       154 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~-~~~~~~~~v~~l~~sp~~~~l~s~s~  232 (293)
                              ....+..|.+.+..+.++-+|+++++.|+|.++++|++++.+.+. ..-+|...|..++|.|+  .++|++.
T Consensus       167 --------~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~ge  236 (967)
T KOG0974|consen  167 --------KPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGE  236 (967)
T ss_pred             --------CcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEecc
Confidence                    112456788889999999999999999999999999999887665 55689999999999999  9999999


Q ss_pred             CCcEEEEEcCCCCEEEEEe--cCCCcceeEECCCCCeEEEEEcCCCCCCCC
Q 022716          233 DLFIDISNVHTGRTVHQIP--CRAAMNSVEWNPKYNLLAYAGDDKNKYQAD  281 (293)
Q Consensus       233 d~~i~iw~~~~~~~~~~~~--~~~~i~~~~~sp~~~~la~~~~d~~~~~~~  281 (293)
                      |.++++|+... ..+..+.  ....|..++-++...++++++.|+.+..|+
T Consensus       237 dctcrvW~~~~-~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~  286 (967)
T KOG0974|consen  237 DCTCRVWGVNG-TQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWD  286 (967)
T ss_pred             ceEEEEEeccc-ceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhh
Confidence            99999996643 3333442  234688999999888999999987655543

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.28  E-value=2.3e-10  Score=89.94  Aligned_cols=136  Identities=21%  Similarity=0.197  Sum_probs=101.9

Q ss_pred             EEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCcee-EEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCC-CCe
Q 022716           23 VHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVK-DIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDAR-SGK  100 (293)
Q Consensus        23 v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~-~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~-~~~  100 (293)
                      -.++.|++.+..++++.++|.+.+-+...   .... ...++.|.-.+....|+....+++++||.|+.+..||++ .++
T Consensus       124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~---~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~  200 (339)
T KOG0280|consen  124 ALSLDISTSGTKIFVSDSRGSISGVYETE---MVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT  200 (339)
T ss_pred             eeEEEeeccCceEEEEcCCCcEEEEecce---eeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcc
Confidence            45778899999999999999999533322   1111 125778998999889988778899999999999999998 333


Q ss_pred             eeee--eeecCceEEEEEc-CCCCEEEEEeCCCeEEEEEcc-ccceeeeecccceeeeeEEecCC
Q 022716          101 CSQQ--AELSGENINITYK-PDGTHIAVGNRDDELTILDVR-KFKPIHRRKFGYEVNEIAWNMTG  161 (293)
Q Consensus       101 ~~~~--~~~~~~~~~~~~~-~~~~~l~~~~~d~~i~l~d~~-~~~~~~~~~~~~~~~~v~~~~~~  161 (293)
                      ++..  ..+...+.++.-+ |.+.++++|+.|..|++||.| -.+|+...+.+..|+.+.|+|.-
T Consensus       201 ~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~  265 (339)
T KOG0280|consen  201 FIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEI  265 (339)
T ss_pred             eeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchh
Confidence            3332  2234456666555 467899999999999999999 46777777777778887776653

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.26  E-value=2.2e-07  Score=75.62  Aligned_cols=249  Identities=16%  Similarity=0.210  Sum_probs=155.6

Q ss_pred             ecCccccEEEEEECCCCCeEEEEeC---CCcEEEeecCCCCCCceeEE---EeeCCcCCeeEEEEcCCCCCEEEEEeC-C
Q 022716           16 YTGHKKKVHSVAWNCTGTKLASGSV---DQTARVWHIEPHGHGKVKDI---ELRGHADSVDQLCWDPKHADLIATASG-D   88 (293)
Q Consensus        16 ~~~h~~~v~~l~~s~~~~~l~s~~~---dg~v~iw~~~~~~~~~~~~~---~~~~h~~~i~~~~~~~~~~~~l~s~~~-d   88 (293)
                      ...+...++-|+|+|+++.|.++-.   +|.|-.|.++... +....+   ...++.  -.-++.++++ ++++++.. -
T Consensus        35 ~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~-G~Lt~ln~~~~~g~~--p~yvsvd~~g-~~vf~AnY~~  110 (346)
T COG2706          35 LVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDD-GRLTFLNRQTLPGSP--PCYVSVDEDG-RFVFVANYHS  110 (346)
T ss_pred             hccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCC-CeEEEeeccccCCCC--CeEEEECCCC-CEEEEEEccC
Confidence            3456678999999999999977644   5888888887531 222222   122222  2566777764 57777766 6


Q ss_pred             CeEEEEeCCC-Ceee---eeeeecC----------ceEEEEEcCCCCEEEEEeC-CCeEEEEEccccceeeeecccceee
Q 022716           89 KTVRLWDARS-GKCS---QQAELSG----------ENINITYKPDGTHIAVGNR-DDELTILDVRKFKPIHRRKFGYEVN  153 (293)
Q Consensus        89 ~~i~vwd~~~-~~~~---~~~~~~~----------~~~~~~~~~~~~~l~~~~~-d~~i~l~d~~~~~~~~~~~~~~~~~  153 (293)
                      +.|.++.++. |...   ....+.+          ++-...+.|++++|++... ..++.+|++...........     
T Consensus       111 g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~-----  185 (346)
T COG2706         111 GSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPA-----  185 (346)
T ss_pred             ceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCcccccccc-----
Confidence            8899998865 3322   1222222          2446778999999998874 45889999875443221110     


Q ss_pred             eeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEe-cCCCcEEEEeCCCC-EEEEEeecc---------CCCeeEEEEcc
Q 022716          154 EIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVG-SADSLVSLWDISEM-LCVRTFTKL---------EWPVRTISFSH  222 (293)
Q Consensus       154 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g-s~d~~i~iwd~~~~-~~~~~~~~~---------~~~v~~l~~sp  222 (293)
                                . + ....+.--|+|||++++.-+. =-+++|.+|.+... ..+..++.+         .....+|..+|
T Consensus       186 ----------~-v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~  253 (346)
T COG2706         186 ----------E-V-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISP  253 (346)
T ss_pred             ----------c-c-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECC
Confidence                      0 0 112233457888888875444 44889999988762 222222211         23577899999


Q ss_pred             CCCEEEEec-CCCcEEEEEcCC-CCEEEE---EecCC-CcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeeec
Q 022716          223 TGDYIASAS-EDLFIDISNVHT-GRTVHQ---IPCRA-AMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN  292 (293)
Q Consensus       223 ~~~~l~s~s-~d~~i~iw~~~~-~~~~~~---~~~~~-~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~~  292 (293)
                      ||++|..+. ....|.++.+.. +.++..   .+..+ .-+...|+|.+++|+.++.++       ..+.+|..++
T Consensus       254 dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~s-------d~i~vf~~d~  322 (346)
T COG2706         254 DGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKS-------DNITVFERDK  322 (346)
T ss_pred             CCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCC-------CcEEEEEEcC
Confidence            999998775 344677777654 232322   23333 368899999999999999775       3455555543

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.24  E-value=8.2e-11  Score=111.57  Aligned_cols=198  Identities=17%  Similarity=0.247  Sum_probs=138.4

Q ss_pred             ccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCC
Q 022716           19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS   98 (293)
Q Consensus        19 h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~   98 (293)
                      |-..|.++.-+|...+-+||+.||.|++|.....  ..+......|. ..|+.+.|+.++ +.+..+..||.+.+|....
T Consensus      2207 ~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~--~~v~~~rt~g~-s~vtr~~f~~qG-nk~~i~d~dg~l~l~q~~p 2282 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHG--QQVVCFRTAGN-SRVTRSRFNHQG-NKFGIVDGDGDLSLWQASP 2282 (2439)
T ss_pred             ccCceeeecCCCCCceEEecCCCceEEEEeccCC--CeEEEeeccCc-chhhhhhhcccC-CceeeeccCCceeecccCC
Confidence            3456777777788888999999999999976532  22222233344 778888898775 4566678899999998762


Q ss_pred             CeeeeeeeecCc-eEEEEEcCCCCEEEEEe---CCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEE
Q 022716           99 GKCSQQAELSGE-NINITYKPDGTHIAVGN---RDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCY  174 (293)
Q Consensus        99 ~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~---~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  174 (293)
                       +.....+.+.. ...++|--  ..+++.+   .++.+.+||...                   +....++-.+|..+.+
T Consensus      2283 -k~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~-------------------~~~~s~v~~~H~~gaT 2340 (2439)
T KOG1064|consen 2283 -KPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLL-------------------PPMNSLVHTCHDGGAT 2340 (2439)
T ss_pred             -cceeccccCCccccceeeee--hhhhccccCCCCCcccchhccc-------------------CcccceeeeecCCCce
Confidence             22222222222 12233432  3455544   356889999532                   1222334478889999


Q ss_pred             EEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEec
Q 022716          175 CIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPC  252 (293)
Q Consensus       175 ~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~  252 (293)
                      ++++-|....+++|+.+|.|.+||+++...++.++.         +. ...++++|+..|.++||++.....++.++.
T Consensus      2341 ~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2341 VLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred             EEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcCch
Confidence            999999999999999999999999988765555433         33 567899999999999999988777776654

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.23  E-value=4.5e-09  Score=89.93  Aligned_cols=167  Identities=17%  Similarity=0.189  Sum_probs=123.0

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCeeeeeee----ecCceEEEEEc--------------------CCCCEEEEEeCCCeEE
Q 022716           78 HADLIATASGDKTVRLWDARSGKCSQQAE----LSGENINITYK--------------------PDGTHIAVGNRDDELT  133 (293)
Q Consensus        78 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~----~~~~~~~~~~~--------------------~~~~~l~~~~~d~~i~  133 (293)
                      ...+++....||.+++||...++....+.    ..+..++..|.                    -+-..++-|...|.+.
T Consensus         4 ~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~   83 (541)
T KOG4547|consen    4 ALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVL   83 (541)
T ss_pred             hhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEE
Confidence            34678888999999999998876544332    22333332221                    1223466677777777


Q ss_pred             EEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCC
Q 022716          134 ILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEW  213 (293)
Q Consensus       134 l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~  213 (293)
                      +++....+.....                  .-.++.+.+.++..+.+-.++-+++.|+.+.+|+......+..+..-..
T Consensus        84 ~ys~~~g~it~~~------------------st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~  145 (541)
T KOG4547|consen   84 LYSVAGGEITAKL------------------STDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKP  145 (541)
T ss_pred             EEEecCCeEEEEE------------------ecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCC
Confidence            7776654432221                  1134556677777777788899999999999999999988888888888


Q ss_pred             CeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEec-CCCcceeEECCC
Q 022716          214 PVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPC-RAAMNSVEWNPK  264 (293)
Q Consensus       214 ~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~-~~~i~~~~~sp~  264 (293)
                      .+.+++++|||..|++|+.  .|++||+++++.+..+.+ .++|+.+.|-.+
T Consensus       146 ~~~sl~is~D~~~l~~as~--~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~  195 (541)
T KOG4547|consen  146 LVSSLCISPDGKILLTASR--QIKVLDIETKEVVITFTGHGSPVRTLSFTTL  195 (541)
T ss_pred             ccceEEEcCCCCEEEeccc--eEEEEEccCceEEEEecCCCcceEEEEEEEe
Confidence            8999999999999999874  699999999999887764 567999999766

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.23  E-value=2.2e-09  Score=91.81  Aligned_cols=191  Identities=19%  Similarity=0.227  Sum_probs=133.8

Q ss_pred             CCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCC-cCCeeEEEE------cC-------------CCCCEEEEEeCC
Q 022716           29 NCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGH-ADSVDQLCW------DP-------------KHADLIATASGD   88 (293)
Q Consensus        29 s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h-~~~i~~~~~------~~-------------~~~~~l~s~~~d   88 (293)
                      .|.+.++|....||.+|+|+...+....  ...-..| ++...+..|      +|             .+...++-|...
T Consensus         2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~--e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~   79 (541)
T KOG4547|consen    2 PPALDYFALSTGDGRLRIWDTAKNQLQQ--EFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQ   79 (541)
T ss_pred             CchhheEeecCCCCeEEEEEccCceeee--eeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCC
Confidence            3556789999999999999987542110  0000011 111122222      11             134567788889


Q ss_pred             CeEEEEeCCCCeeeeeee---ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEE
Q 022716           89 KTVRLWDARSGKCSQQAE---LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFF  165 (293)
Q Consensus        89 ~~i~vwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  165 (293)
                      |.|.+|++..++....+.   +.+.+.++.+..+-.-+.+++.|..+..|+....+..+..+                  
T Consensus        80 g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~------------------  141 (541)
T KOG4547|consen   80 GSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWK------------------  141 (541)
T ss_pred             ccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeec------------------
Confidence            999999999988776655   33455566667666778899999999999987655433221                  


Q ss_pred             EecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccC-----CCEEEE-ecCCCcEEEE
Q 022716          166 LTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHT-----GDYIAS-ASEDLFIDIS  239 (293)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~-----~~~l~s-~s~d~~i~iw  239 (293)
                        +....+.+++++||+..+++++  +.|++||+++.+.+..|++|..+|++++|..+     |.++.+ +..+.-+.+|
T Consensus       142 --~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w  217 (541)
T KOG4547|consen  142 --EQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVW  217 (541)
T ss_pred             --cCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEE
Confidence              2233456788999999999887  46999999999999999999999999999877     666654 4566778888


Q ss_pred             EcCC
Q 022716          240 NVHT  243 (293)
Q Consensus       240 ~~~~  243 (293)
                      -+..
T Consensus       218 ~v~~  221 (541)
T KOG4547|consen  218 VVEK  221 (541)
T ss_pred             EEEc
Confidence            7654

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.21  E-value=9.1e-11  Score=98.00  Aligned_cols=228  Identities=18%  Similarity=0.216  Sum_probs=160.2

Q ss_pred             ecCccccEEEEEECCC--CCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEE
Q 022716           16 YTGHKKKVHSVAWNCT--GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL   93 (293)
Q Consensus        16 ~~~h~~~v~~l~~s~~--~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~v   93 (293)
                      ..||...|-.-.|-|.  ...+++.+.||.|++=.+..... ......+..|.++|.-++..|.....|+|+++|+.+.-
T Consensus       181 ~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~-~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~  259 (559)
T KOG1334|consen  181 ESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGY-VENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFH  259 (559)
T ss_pred             ccccccchhhhhccCCCCCcCceeccccCceeeeeeccccc-eecceecccccCccceeeecCCCCCcccccccccceee
Confidence            4588887777778764  45799999999999976653221 11133466799999999999988888999999999999


Q ss_pred             EeCCCCeeeeeee---ecCc----eEEEEEcCCCC-EEEEEeCCCeEEEEEcccccee------ee------e-ccccee
Q 022716           94 WDARSGKCSQQAE---LSGE----NINITYKPDGT-HIAVGNRDDELTILDVRKFKPI------HR------R-KFGYEV  152 (293)
Q Consensus        94 wd~~~~~~~~~~~---~~~~----~~~~~~~~~~~-~l~~~~~d~~i~l~d~~~~~~~------~~------~-~~~~~~  152 (293)
                      .|++.+.....+.   .+..    -..++..|... ++++++.|.-.+++|.+.....      ..      . .....|
T Consensus       260 ~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~I  339 (559)
T KOG1334|consen  260 IDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNI  339 (559)
T ss_pred             eeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccc
Confidence            9988765432221   1111    23567777655 7899999999999998754321      11      1 112345


Q ss_pred             eeeEEecCC-CE---------EEEecCC--C------------------------CEEEE-EECCCCCEEEEecCCCcEE
Q 022716          153 NEIAWNMTG-EM---------FFLTTGN--A------------------------GCYCI-AIDPMGRYFAVGSADSLVS  195 (293)
Q Consensus       153 ~~v~~~~~~-~~---------~~~~~~~--~------------------------~~~~~-~~~~~~~~l~~gs~d~~i~  195 (293)
                      ..++++..+ ++         +++....  +                        .|..+ .|.|...++++|+.-|.|-
T Consensus       340 Tgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIF  419 (559)
T KOG1334|consen  340 TGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIF  419 (559)
T ss_pred             eeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEE
Confidence            666666332 22         1111110  0                        01222 3568889999999999999


Q ss_pred             EEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCC
Q 022716          196 LWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTG  244 (293)
Q Consensus       196 iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~  244 (293)
                      ||+-.+++.++-+.+..--|++|.=+|--..||+.+-|..|+||...+-
T Consensus       420 iW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~  468 (559)
T KOG1334|consen  420 IWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLTA  468 (559)
T ss_pred             EEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecCCcc
Confidence            9999888877767666668999999999999999999999999988543

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.21  E-value=1.1e-07  Score=91.47  Aligned_cols=245  Identities=12%  Similarity=0.055  Sum_probs=144.4

Q ss_pred             EEEEECCC-CCeEEEEeCCCcEEEeecCCCCCCceeEEEeeC------------CcCCeeEEEEcCCCCCEEEEEeCCCe
Q 022716           24 HSVAWNCT-GTKLASGSVDQTARVWHIEPHGHGKVKDIELRG------------HADSVDQLCWDPKHADLIATASGDKT   90 (293)
Q Consensus        24 ~~l~~s~~-~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~------------h~~~i~~~~~~~~~~~~l~s~~~d~~   90 (293)
                      ..++++++ ++.+++-+.++.|+++|.+..   ......-.+            +-..-..+++.+++..++++-..+..
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~---~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~  647 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGN---FIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHA  647 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCCC---EEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCce
Confidence            46788875 556677777899999997532   111110001            11224577887765445555556788


Q ss_pred             EEEEeCCCCeeeeeee-----------------ecCceEEEEEcC-CCCEEEEEeCCCeEEEEEccccceeeeeccccee
Q 022716           91 VRLWDARSGKCSQQAE-----------------LSGENINITYKP-DGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEV  152 (293)
Q Consensus        91 i~vwd~~~~~~~~~~~-----------------~~~~~~~~~~~~-~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~  152 (293)
                      |+++|..++.......                 .-..+..++++| ++..+++...+++|.+||..+.....-...+...
T Consensus       648 Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~  727 (1057)
T PLN02919        648 LREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER  727 (1057)
T ss_pred             EEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc
Confidence            9999987764321110                 012345789999 5566677777899999998664321100000000


Q ss_pred             eeeEEecCCCEEEEecCCCCEEEEEECCCCC-EEEEecCCCcEEEEeCCCCEEEEEeec-------------c-------
Q 022716          153 NEIAWNMTGEMFFLTTGNAGCYCIAIDPMGR-YFAVGSADSLVSLWDISEMLCVRTFTK-------------L-------  211 (293)
Q Consensus       153 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~gs~d~~i~iwd~~~~~~~~~~~~-------------~-------  211 (293)
                         .  ..+.. .....-.....++++|+++ .+++-+.++.|++||++++.......+             .       
T Consensus       728 ---~--~~g~~-~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~  801 (1057)
T PLN02919        728 ---N--LNGSS-GTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEV  801 (1057)
T ss_pred             ---c--CCCCc-cccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhh
Confidence               0  00000 0000112345689999987 556667778999999886542110000             0       


Q ss_pred             -CCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEecC--------------CCcceeEECCCCCeEEEEEcCCC
Q 022716          212 -EWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCR--------------AAMNSVEWNPKYNLLAYAGDDKN  276 (293)
Q Consensus       212 -~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~--------------~~i~~~~~sp~~~~la~~~~d~~  276 (293)
                       -.....++++|+|+.+++.+.++.|++||..++.........              .....|+++|+|+++++-+.+..
T Consensus       802 ~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~  881 (1057)
T PLN02919        802 LLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSL  881 (1057)
T ss_pred             hccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCE
Confidence             112468999999998899999999999999877654322211              13457899999987766655543


Q ss_pred             C
Q 022716          277 K  277 (293)
Q Consensus       277 ~  277 (293)
                      +
T Consensus       882 I  882 (1057)
T PLN02919        882 I  882 (1057)
T ss_pred             E
Confidence            3

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.16  E-value=7.3e-08  Score=83.75  Aligned_cols=183  Identities=9%  Similarity=0.018  Sum_probs=113.2

Q ss_pred             CeeEEEEcCCCCCEEEEEeC---CCeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeC-C--CeEEEEEccccc
Q 022716           68 SVDQLCWDPKHADLIATASG---DKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNR-D--DELTILDVRKFK  141 (293)
Q Consensus        68 ~i~~~~~~~~~~~~l~s~~~---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d--~~i~l~d~~~~~  141 (293)
                      ......|+|++..+++..+.   +..|.++|+.+++........+......|+|||+.++.... +  ..+.++|+.+..
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~  268 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT  268 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc
Confidence            55677899987653443333   45688889988876655555566667889999988765442 3  467777776554


Q ss_pred             eeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecC-CC--cEEEEeCCCCEEEEEeeccCCCeeEE
Q 022716          142 PIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSA-DS--LVSLWDISEMLCVRTFTKLEWPVRTI  218 (293)
Q Consensus       142 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~-d~--~i~iwd~~~~~~~~~~~~~~~~v~~l  218 (293)
                      ..+....                     ........|+|||+.++-.+. .+  .|.+.|+..+...+... ....  ..
T Consensus       269 ~~~LT~~---------------------~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~-~g~~--~~  324 (419)
T PRK04043        269 LTQITNY---------------------PGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF-HGKN--NS  324 (419)
T ss_pred             EEEcccC---------------------CCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc-CCCc--Cc
Confidence            3222111                     111123357777766555443 23  57777887765433221 1111  24


Q ss_pred             EEccCCCEEEEecCC---------CcEEEEEcCCCCEEEEEecCCCcceeEECCCCCeEEEEEcCC
Q 022716          219 SFSHTGDYIASASED---------LFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDK  275 (293)
Q Consensus       219 ~~sp~~~~l~s~s~d---------~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~d~  275 (293)
                      .|+|+|++++..+..         ..|.+.|..++.. +.+..........|+|||..|+....++
T Consensus       325 ~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~~~~~~p~~SPDG~~I~f~~~~~  389 (419)
T PRK04043        325 SVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTANGVNQFPRFSSDGGSIMFIKYLG  389 (419)
T ss_pred             eECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCCCCcCCeEECCCCCEEEEEEccC
Confidence            899999988766543         2578888877764 3443333344689999999999987653

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.15  E-value=8e-07  Score=74.62  Aligned_cols=210  Identities=15%  Similarity=0.144  Sum_probs=124.2

Q ss_pred             ECCCCCeEEEEeC----------CCcEEEeecCCCCCCceeEEEeeCC-----cCCeeEEEEcCCCCCEEEEEe-C-CCe
Q 022716           28 WNCTGTKLASGSV----------DQTARVWHIEPHGHGKVKDIELRGH-----ADSVDQLCWDPKHADLIATAS-G-DKT   90 (293)
Q Consensus        28 ~s~~~~~l~s~~~----------dg~v~iw~~~~~~~~~~~~~~~~~h-----~~~i~~~~~~~~~~~~l~s~~-~-d~~   90 (293)
                      +||||+.|..+..          +..|.+||..+..  ....+.+..-     -..-..+.++|++. .|+... . +..
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~--~~~~i~~p~~p~~~~~~~~~~~~ls~dgk-~l~V~n~~p~~~  129 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHL--PIADIELPEGPRFLVGTYPWMTSLTPDNK-TLLFYQFSPSPA  129 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCc--EEeEEccCCCchhhccCccceEEECCCCC-EEEEecCCCCCE
Confidence            8999999876655          8999999997542  2222222111     11223567788764 444343 3 789


Q ss_pred             EEEEeCCCCeeeeeeeecCceEE--------EEEcCCCCEEEEEe-CCCeEE-----EEEccccceeeeecccceeeeeE
Q 022716           91 VRLWDARSGKCSQQAELSGENIN--------ITYKPDGTHIAVGN-RDDELT-----ILDVRKFKPIHRRKFGYEVNEIA  156 (293)
Q Consensus        91 i~vwd~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~~~~-~d~~i~-----l~d~~~~~~~~~~~~~~~~~~v~  156 (293)
                      |.+.|+.+++.+..+...+...-        +....||+.+.... .+|+..     +++... .++....        .
T Consensus       130 V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~-~~v~~rP--------~  200 (352)
T TIGR02658       130 VGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPED-EYLINHP--------A  200 (352)
T ss_pred             EEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCc-cccccCC--------c
Confidence            99999999988776665442222        22234444333221 122211     111100 0000000        0


Q ss_pred             Eec-CCCEEEEecC--------------------------------CCCEEEEEECCCCCEEEEec----------CCCc
Q 022716          157 WNM-TGEMFFLTTG--------------------------------NAGCYCIAIDPMGRYFAVGS----------ADSL  193 (293)
Q Consensus       157 ~~~-~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~l~~gs----------~d~~  193 (293)
                      +.+ ++..++++..                                .....-++++|+++.+.+..          ..+.
T Consensus       201 ~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~  280 (352)
T TIGR02658       201 YSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRF  280 (352)
T ss_pred             eEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCE
Confidence            011 1111111111                                11223489999988877642          2257


Q ss_pred             EEEEeCCCCEEEEEeeccCCCeeEEEEccCCC-EEEEec-CCCcEEEEEcCCCCEEEEE
Q 022716          194 VSLWDISEMLCVRTFTKLEWPVRTISFSHTGD-YIASAS-EDLFIDISNVHTGRTVHQI  250 (293)
Q Consensus       194 i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~-~l~s~s-~d~~i~iw~~~~~~~~~~~  250 (293)
                      |.++|.++++.+..+.- ...+..++++||++ +|++.. .++.|.+.|..+++.++.+
T Consensus       281 V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       281 LFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV  338 (352)
T ss_pred             EEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence            99999999998887643 45889999999999 777665 6788999999999998887

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.13  E-value=8.6e-09  Score=82.96  Aligned_cols=253  Identities=12%  Similarity=0.113  Sum_probs=164.5

Q ss_pred             cccccceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeC
Q 022716            8 FKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASG   87 (293)
Q Consensus         8 ~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~   87 (293)
                      ++....+.+.||.+.|.+...-|-.+-+.+.+.|.++|+|--.+.. .....+. .....+++++.+.++ ...|+.|-.
T Consensus        12 ~kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~-q~wpsI~-~~mP~~~~~~~y~~e-~~~L~vg~~   88 (404)
T KOG1409|consen   12 KKPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSG-QYWPSIY-HYMPSPCSAMEYVSE-SRRLYVGQD   88 (404)
T ss_pred             cchhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEecccc-ccCchhh-hhCCCCceEeeeecc-ceEEEEEEe
Confidence            4455667789999999999988888889999999999999533211 1111221 123456888888876 456777888


Q ss_pred             CCeEEEEeCCCC----eeeee-eeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCC
Q 022716           88 DKTVRLWDARSG----KCSQQ-AELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGE  162 (293)
Q Consensus        88 d~~i~vwd~~~~----~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~  162 (293)
                      +|++.-+.+...    ...+. ..+...+..+.|+...+++++.+.|..+..--.+....+...                
T Consensus        89 ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y----------------  152 (404)
T KOG1409|consen   89 NGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGY----------------  152 (404)
T ss_pred             cceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccce----------------
Confidence            888877654211    11111 123344556777777788888888877654433333322211                


Q ss_pred             EEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeC--CCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEE
Q 022716          163 MFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDI--SEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISN  240 (293)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~--~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~  240 (293)
                        .+.+....   +.++  -.+...|...|.|.+-.+  .....+.++.+|..++.+++|.|..+.|.+|+.|..+.+||
T Consensus       153 --~~~~~~t~---~~~d--~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wd  225 (404)
T KOG1409|consen  153 --NFETPASA---LQFD--ALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWD  225 (404)
T ss_pred             --EeeccCCC---Ccee--eEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEe
Confidence              11111111   1111  115566777777666554  34456778899999999999999999999999999999999


Q ss_pred             cCCCCE--EEEEecCCCcceeEECCCCCeEEEEEcCCCCCCCCcceEE
Q 022716          241 VHTGRT--VHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFR  286 (293)
Q Consensus       241 ~~~~~~--~~~~~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~  286 (293)
                      +-..+.  .....+...+..+..-+.-.++.+++.|+.+-.|++.+.|
T Consensus       226 igg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r  273 (404)
T KOG1409|consen  226 IGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKR  273 (404)
T ss_pred             ccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEecccee
Confidence            865443  2334455678888887878889999988654444444333

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.13  E-value=1.5e-07  Score=81.74  Aligned_cols=191  Identities=13%  Similarity=0.075  Sum_probs=113.3

Q ss_pred             cEEEEEECCCCCe-EEEEeCC---CcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCC--CeEEEEe
Q 022716           22 KVHSVAWNCTGTK-LASGSVD---QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD--KTVRLWD   95 (293)
Q Consensus        22 ~v~~l~~s~~~~~-l~s~~~d---g~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d--~~i~vwd   95 (293)
                      .+....|+|||+. ++..+.+   ..|.++|+...   ....  +....+......|+|++..++++.+.+  ..|.++|
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg---~~~~--lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d  263 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTG---KKEK--IASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYD  263 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCC---cEEE--EecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEE
Confidence            6778999999985 6654444   45667777542   2222  222334455678999877777776654  4577778


Q ss_pred             CCCCeeeeeeeecCceEEEEEcCCCCEEEEEeC-CC--eEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCC
Q 022716           96 ARSGKCSQQAELSGENINITYKPDGTHIAVGNR-DD--ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAG  172 (293)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~--~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  172 (293)
                      +.++.........+......|+|||+.++..+. .+  .|.++|+.+....+....+                    .  
T Consensus       264 l~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g--------------------~--  321 (419)
T PRK04043        264 TNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHG--------------------K--  321 (419)
T ss_pred             CCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCC--------------------C--
Confidence            877765443333333445689999998877763 23  5666677654432211100                    0  


Q ss_pred             EEEEEECCCCCEEEEecCC---------CcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCC-Cc--EEEEE
Q 022716          173 CYCIAIDPMGRYFAVGSAD---------SLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASED-LF--IDISN  240 (293)
Q Consensus       173 ~~~~~~~~~~~~l~~gs~d---------~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d-~~--i~iw~  240 (293)
                       ....++|+|+.++..+..         ..|.+.|+..+.. +.++... ......|+|||+.++..+.+ +.  +.+.+
T Consensus       322 -~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~~-~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~  398 (419)
T PRK04043        322 -NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTANG-VNQFPRFSSDGGSIMFIKYLGNQSALGIIR  398 (419)
T ss_pred             -cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCCC-CcCCeEECCCCCEEEEEEccCCcEEEEEEe
Confidence             012566777665554433         3678888877753 3444332 33457899999988666543 23  45555


Q ss_pred             cC
Q 022716          241 VH  242 (293)
Q Consensus       241 ~~  242 (293)
                      +.
T Consensus       399 l~  400 (419)
T PRK04043        399 LN  400 (419)
T ss_pred             cC
Confidence            53

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.11  E-value=1.7e-07  Score=90.20  Aligned_cols=218  Identities=11%  Similarity=0.161  Sum_probs=137.2

Q ss_pred             cEEEEEECCCCCeEEEEeC-CCcEEEeecCCCCCCceeEEEeeCC---------------cCCeeEEEEcCCCCCEEEEE
Q 022716           22 KVHSVAWNCTGTKLASGSV-DQTARVWHIEPHGHGKVKDIELRGH---------------ADSVDQLCWDPKHADLIATA   85 (293)
Q Consensus        22 ~v~~l~~s~~~~~l~s~~~-dg~v~iw~~~~~~~~~~~~~~~~~h---------------~~~i~~~~~~~~~~~~l~s~   85 (293)
                      ....++++++++.|..+.. .+.|+.+|+...   ....+.-.+.               -..-..++++|+++.++++.
T Consensus       625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~---~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad  701 (1057)
T PLN02919        625 RPQGLAYNAKKNLLYVADTENHALREIDFVNE---TVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAM  701 (1057)
T ss_pred             CCcEEEEeCCCCEEEEEeCCCceEEEEecCCC---EEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEE
Confidence            3578899998887655544 578888887542   1111100000               01234688888666788888


Q ss_pred             eCCCeEEEEeCCCCeeeeeee---------------ecCceEEEEEcCCCCEEE-EEeCCCeEEEEEccccceeeeeccc
Q 022716           86 SGDKTVRLWDARSGKCSQQAE---------------LSGENINITYKPDGTHIA-VGNRDDELTILDVRKFKPIHRRKFG  149 (293)
Q Consensus        86 ~~d~~i~vwd~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~l~-~~~~d~~i~l~d~~~~~~~~~~~~~  149 (293)
                      +.+..|++||..++.......               .-..+..++++|+++.|+ +.+.+++|++||+++........ +
T Consensus       702 ~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~g-g  780 (1057)
T PLN02919        702 AGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAG-G  780 (1057)
T ss_pred             CCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEe-c
Confidence            889999999987765421100               012345689999998554 55567899999987644211100 0


Q ss_pred             cee---eeeEEec-CCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeecc--------------
Q 022716          150 YEV---NEIAWNM-TGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL--------------  211 (293)
Q Consensus       150 ~~~---~~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~--------------  211 (293)
                      ...   ....+.. ++..  ....-.....++++++|+.+++-+.+++|++||..++.... +.+.              
T Consensus       781 ~~~~~~~l~~fG~~dG~g--~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~t-iaG~G~~G~~dG~~~~a~  857 (1057)
T PLN02919        781 DPTFSDNLFKFGDHDGVG--SEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTT-LAGTGKAGFKDGKALKAQ  857 (1057)
T ss_pred             ccccCcccccccCCCCch--hhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEE-EeccCCcCCCCCcccccc
Confidence            000   0000100 0000  00001124578899999999999999999999998775442 2221              


Q ss_pred             CCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCE
Q 022716          212 EWPVRTISFSHTGDYIASASEDLFIDISNVHTGRT  246 (293)
Q Consensus       212 ~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~  246 (293)
                      -.....|+++++|+.+++.+.++.|++||..+++.
T Consensus       858 l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        858 LSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             cCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence            12467899999999999999999999999988764

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.09  E-value=7.1e-09  Score=83.45  Aligned_cols=241  Identities=17%  Similarity=0.291  Sum_probs=144.0

Q ss_pred             cCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCC-----cCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716           17 TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGH-----ADSVDQLCWDPKHADLIATASGDKTV   91 (293)
Q Consensus        17 ~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h-----~~~i~~~~~~~~~~~~l~s~~~d~~i   91 (293)
                      .+|.-.|.++.++.|+..++++. |=.|-+|+++..... ......+.+     ...|++..|+|.....++-.+.-|+|
T Consensus       161 NaHtyhiNSIS~NsD~Et~lSAD-dLRINLWnlei~d~s-FnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtI  238 (433)
T KOG1354|consen  161 NAHTYHINSISVNSDKETFLSAD-DLRINLWNLEIIDQS-FNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTI  238 (433)
T ss_pred             ccceeEeeeeeecCccceEeecc-ceeeeeccccccCCc-eeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcE
Confidence            47888999999999999888875 788899998743211 111122222     24688889999888888888999999


Q ss_pred             EEEeCCCCe-eeee---eeec-------------CceEEEEEcCCCCEEEEEeCCCeEEEEEcc-ccceeeeecccceee
Q 022716           92 RLWDARSGK-CSQQ---AELS-------------GENINITYKPDGTHIAVGNRDDELTILDVR-KFKPIHRRKFGYEVN  153 (293)
Q Consensus        92 ~vwd~~~~~-~~~~---~~~~-------------~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~-~~~~~~~~~~~~~~~  153 (293)
                      ++-|++... |...   ++..             ..+..+.|+++|+++++-. -.++++||++ ..+|+.........+
T Consensus       239 rLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRD-yltvk~wD~nme~~pv~t~~vh~~lr  317 (433)
T KOG1354|consen  239 RLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-YLTVKLWDLNMEAKPVETYPVHEYLR  317 (433)
T ss_pred             EEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEec-cceeEEEeccccCCcceEEeehHhHH
Confidence            999997442 1111   1111             1223488999999998753 4799999984 334443322110000


Q ss_pred             eeEEecCCCEEEEecCCC---CEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEE-EeeccCC--CeeEEEEccCCCEE
Q 022716          154 EIAWNMTGEMFFLTTGNA---GCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVR-TFTKLEW--PVRTISFSHTGDYI  227 (293)
Q Consensus       154 ~v~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~-~~~~~~~--~v~~l~~sp~~~~l  227 (293)
                      .       ++-.+- .++   .-.-++|+-++.++++|+-.+..++|+...+.... ++.....  ++.++   ..-+.+
T Consensus       318 ~-------kLc~lY-EnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~---~k~~~V  386 (433)
T KOG1354|consen  318 S-------KLCSLY-ENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKV---LKLRLV  386 (433)
T ss_pred             H-------HHHHHh-hccchhheeEEEEcCCcceEecccccceEEEecCCCCcceeecccccccCCccccc---ccceee
Confidence            0       000000 001   12346788889999999999999999976654221 2211111  22332   122334


Q ss_pred             EEecCCCcEEEEEcCCCCEEEEEecCCCcceeEECCCCCeEEEEEcCCCCCC
Q 022716          228 ASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQ  279 (293)
Q Consensus       228 ~s~s~d~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~d~~~~~  279 (293)
                      ++++......++       +..+.....|--.+|||..+.+|.+..+ |+|+
T Consensus       387 ~~~g~r~~~~~~-------vd~ldf~kkilh~aWhp~en~ia~aatn-nlyi  430 (433)
T KOG1354|consen  387 SSSGKRKRDEIS-------VDALDFRKKILHTAWHPKENSIAVAATN-NLYI  430 (433)
T ss_pred             ecCCCccccccc-------cchhhhhhHHHhhccCCccceeeeeecC-ceEE
Confidence            444443332222       1223334456677999999999999654 4444

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.09  E-value=3.4e-07  Score=86.63  Aligned_cols=257  Identities=15%  Similarity=0.228  Sum_probs=159.0

Q ss_pred             ccEEEEEECCCCCeEE--EEeCCC--cEEEeecCCCCCCceeEEEee-----CCcCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716           21 KKVHSVAWNCTGTKLA--SGSVDQ--TARVWHIEPHGHGKVKDIELR-----GHADSVDQLCWDPKHADLIATASGDKTV   91 (293)
Q Consensus        21 ~~v~~l~~s~~~~~l~--s~~~dg--~v~iw~~~~~~~~~~~~~~~~-----~h~~~i~~~~~~~~~~~~l~s~~~d~~i   91 (293)
                      ..+...+|.+..+.+.  ++....  .|.+-...... .......+.     ...+.|.++.+.++. ..++.+..+|.|
T Consensus        22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~-~~~~l~s~~~~~~~~~~~~ivs~~yl~d~-~~l~~~~~~Gdi   99 (928)
T PF04762_consen   22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDG-SVEVLASWDAPLPDDPNDKIVSFQYLADS-ESLCIALASGDI   99 (928)
T ss_pred             cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCC-ceeEEEeccccCCcCCCCcEEEEEeccCC-CcEEEEECCceE
Confidence            3577778877766543  333333  23333222111 111112222     234568888888865 456667888999


Q ss_pred             EEE----eCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccc------eeeeeEEecCC
Q 022716           92 RLW----DARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGY------EVNEIAWNMTG  161 (293)
Q Consensus        92 ~vw----d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~------~~~~v~~~~~~  161 (293)
                      .+.    +.........-.....+.+++|+||+..|+..+.++++.+.+ +++.++.+.....      .--.|.|....
T Consensus       100 ~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt-~~fd~i~E~~l~~~~~~~~~~VsVGWGkKe  178 (928)
T PF04762_consen  100 ILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMT-RDFDPISEVPLDSDDFGESKHVSVGWGKKE  178 (928)
T ss_pred             EEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEe-ccceEEEEeecCccccCCCceeeeccCccc
Confidence            988    655555444445677888999999999999999999998875 5555555443211      12234454332


Q ss_pred             CEE-----------------------EEecCCCCEEEEEECCCCCEEEEecC---C---CcEEEEeCCCCEEEEEeeccC
Q 022716          162 EMF-----------------------FLTTGNAGCYCIAIDPMGRYFAVGSA---D---SLVSLWDISEMLCVRTFTKLE  212 (293)
Q Consensus       162 ~~~-----------------------~~~~~~~~~~~~~~~~~~~~l~~gs~---d---~~i~iwd~~~~~~~~~~~~~~  212 (293)
                      ..+                       .+. .+..-..|+|-.||.++|+.+-   .   ..+++|+-+ |....+-....
T Consensus       179 TQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~  256 (928)
T PF04762_consen  179 TQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVD  256 (928)
T ss_pred             CccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCC
Confidence            111                       011 3345678999999999999875   2   579999865 55443333333


Q ss_pred             CCeeEEEEccCCCEEEEecC---CCcEEEEEcCCCCEEEEEe-----cCCCcceeEECCCCCeEEEEEcCCCCCCCCcce
Q 022716          213 WPVRTISFSHTGDYIASASE---DLFIDISNVHTGRTVHQIP-----CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGV  284 (293)
Q Consensus       213 ~~v~~l~~sp~~~~l~s~s~---d~~i~iw~~~~~~~~~~~~-----~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~  284 (293)
                      +--.+++|-|.|+++|+.-.   ...|.+|--+ |..-..+.     ....|..++|++++..||..-.|+         
T Consensus       257 gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErN-GLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~---------  326 (928)
T PF04762_consen  257 GLEGALSWRPSGNLIASSQRLPDRHDVVFFERN-GLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR---------  326 (928)
T ss_pred             CccCCccCCCCCCEEEEEEEcCCCcEEEEEecC-CcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC---------
Confidence            33456899999999998754   2335555432 32222222     245789999999999999977553         


Q ss_pred             EEEEeeec
Q 022716          285 FRIYGFEN  292 (293)
Q Consensus       285 ~~~~~~~~  292 (293)
                      +++|..-|
T Consensus       327 vqLWt~~N  334 (928)
T PF04762_consen  327 VQLWTRSN  334 (928)
T ss_pred             ceEEEeeC
Confidence            67776554

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.08  E-value=4.9e-09  Score=95.07  Aligned_cols=191  Identities=11%  Similarity=0.095  Sum_probs=136.7

Q ss_pred             EEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCe--e-EE--EEcCCCCCEEEEEeCCCeEEEEeCCCC
Q 022716           25 SVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSV--D-QL--CWDPKHADLIATASGDKTVRLWDARSG   99 (293)
Q Consensus        25 ~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i--~-~~--~~~~~~~~~l~s~~~d~~i~vwd~~~~   99 (293)
                      ...+.-+..+++.+..++.+-+||.....    ...+. .+...+  . ++  ..+++ .-.+++|+--+.|.+|+....
T Consensus        92 g~~l~~e~k~i~l~~~~ns~~i~d~~~~~----~~~~i-~~~er~~l~~~~~~g~s~~-~~~i~~gsv~~~iivW~~~~d  165 (967)
T KOG0974|consen   92 GAKLFEENKKIALVTSRNSLLIRDSKNSS----VLSKI-QSDERCTLYSSLIIGDSAE-ELYIASGSVFGEIIVWKPHED  165 (967)
T ss_pred             ccchhhhcceEEEEEcCceEEEEecccCc----eehhc-CCCceEEEEeEEEEeccCc-EEEEEeccccccEEEEecccc
Confidence            34455567889999999999999975321    11111 111111  1 11  12222 346788888899999997622


Q ss_pred             e-eeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEE
Q 022716          100 K-CSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAI  178 (293)
Q Consensus       100 ~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  178 (293)
                      . ..+...+.+.+..+.++-||.++++.+.|.++++|++.+.+......+                   .|.+.+..+.+
T Consensus       166 n~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~f-------------------gHsaRvw~~~~  226 (967)
T KOG0974|consen  166 NKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGF-------------------GHSARVWACCF  226 (967)
T ss_pred             CCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccc-------------------cccceeEEEEe
Confidence            2 222334567788899999999999999999999999988664432111                   34556777888


Q ss_pred             CCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccC-CCeeEEEEccCCCEEEEecCCCcEEEEEcCC
Q 022716          179 DPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLE-WPVRTISFSHTGDYIASASEDLFIDISNVHT  243 (293)
Q Consensus       179 ~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~-~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~  243 (293)
                      +|+  .+++++.|.+.++|+. ++..+..+.+|. ..+..++..++...++|++.|+.+++|+...
T Consensus       227 ~~n--~i~t~gedctcrvW~~-~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  227 LPN--RIITVGEDCTCRVWGV-NGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             ccc--eeEEeccceEEEEEec-ccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence            887  8999999999999965 344455777776 4689999999999999999999999999764

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.08  E-value=1.1e-07  Score=74.26  Aligned_cols=204  Identities=10%  Similarity=0.031  Sum_probs=132.3

Q ss_pred             EEEEECC-----CCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCC
Q 022716           24 HSVAWNC-----TGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS   98 (293)
Q Consensus        24 ~~l~~s~-----~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~   98 (293)
                      +.+.|.|     ....||.||.-|...+|...++.. ...  ....|...|.-+.-..+...-+.-++.|.++++.++..
T Consensus        71 ~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~-h~~--~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~  147 (344)
T KOG4532|consen   71 TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDG-HLY--QCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSG  147 (344)
T ss_pred             ecccccchHhhccccEEEeccccceeeeecccCccc-cee--eecccccchhhhhhhcccccceeeccCCcceeEEEEec
Confidence            3455555     234789999999999998875421 111  12234433322211112223355678999999988765


Q ss_pred             Ceeeeeeeec-CceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEE
Q 022716           99 GKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIA  177 (293)
Q Consensus        99 ~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  177 (293)
                      +......... -...++++++|++++++.+....|..+.+........                 ....+...++-.+..
T Consensus       148 ~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~-----------------~~~~a~t~D~gF~~S  210 (344)
T KOG4532|consen  148 DSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIE-----------------NIYEAPTSDHGFYNS  210 (344)
T ss_pred             CcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceee-----------------eeEecccCCCceeee
Confidence            4332222222 1245789999999999999889999988765332111                 112333444556788


Q ss_pred             ECCCCCEEEEecCCCcEEEEeCCCCEEEE-----EeeccCCCeeEEEEccCCC--EEEEecCCCcEEEEEcCCCCEE
Q 022716          178 IDPMGRYFAVGSADSLVSLWDISEMLCVR-----TFTKLEWPVRTISFSHTGD--YIASASEDLFIDISNVHTGRTV  247 (293)
Q Consensus       178 ~~~~~~~l~~gs~d~~i~iwd~~~~~~~~-----~~~~~~~~v~~l~~sp~~~--~l~s~s~d~~i~iw~~~~~~~~  247 (293)
                      |+.....+|+++.||++.|||++....+.     +-..|.+.++.+.|+|-|.  +|...-.-+.+.+.|.++++..
T Consensus       211 ~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~  287 (344)
T KOG4532|consen  211 FSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNH  287 (344)
T ss_pred             eccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCcee
Confidence            88899999999999999999998653322     1224678999999999764  4555555677899999887643

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=99.08  E-value=1.7e-09  Score=86.97  Aligned_cols=156  Identities=13%  Similarity=0.171  Sum_probs=113.1

Q ss_pred             EEEEeCCCeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCC
Q 022716           82 IATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTG  161 (293)
Q Consensus        82 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~  161 (293)
                      -++.+.+..|-+-|+.++.... +...+.+.+..|.-.+..+..|...|.|..+|+|....-.                +
T Consensus       227 hfs~G~sqqv~L~nvetg~~qs-f~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~----------------~  289 (425)
T KOG2695|consen  227 HFSVGLSQQVLLTNVETGHQQS-FQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGN----------------G  289 (425)
T ss_pred             eecccccceeEEEEeecccccc-cccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCC----------------C
Confidence            3677788888888888875433 3355666677788878899999999999999998652110                1


Q ss_pred             CEEEEecCCCCEEEEEECC-CCCEEEEecCCCcEEEEeCCCCEE---EEEeeccCCCeeEEE--EccCCCEEEEecCCCc
Q 022716          162 EMFFLTTGNAGCYCIAIDP-MGRYFAVGSADSLVSLWDISEMLC---VRTFTKLEWPVRTIS--FSHTGDYIASASEDLF  235 (293)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~-~~~~l~~gs~d~~i~iwd~~~~~~---~~~~~~~~~~v~~l~--~sp~~~~l~s~s~d~~  235 (293)
                      .......+++.++++-.-. ++.+|++.+.+|+|.+||++--++   +.+..+|.+.-..+-  ..+....++++++|..
T Consensus       290 ~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcy  369 (425)
T KOG2695|consen  290 WCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCY  369 (425)
T ss_pred             cceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeE
Confidence            1112233455566665444 688999999999999999986555   677777765433333  3456778899999999


Q ss_pred             EEEEEcCCCCEEEEEecCC
Q 022716          236 IDISNVHTGRTVHQIPCRA  254 (293)
Q Consensus       236 i~iw~~~~~~~~~~~~~~~  254 (293)
                      .+||.++.|+.+..++...
T Consensus       370 tRiWsl~~ghLl~tipf~~  388 (425)
T KOG2695|consen  370 TRIWSLDSGHLLCTIPFPY  388 (425)
T ss_pred             EEEEecccCceeeccCCCC
Confidence            9999999999988876543

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.06  E-value=8.3e-10  Score=105.02  Aligned_cols=185  Identities=14%  Similarity=0.180  Sum_probs=130.4

Q ss_pred             eCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeeee--cCceEEEEEcCCCCEEEEEeCCCeEEEEEcccc
Q 022716           63 RGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAEL--SGENINITYKPDGTHIAVGNRDDELTILDVRKF  140 (293)
Q Consensus        63 ~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~  140 (293)
                      +.+-..|..+.-+|... +.+||+.||.|++|.-..++.+..+..  ...+..+.|+.+|..+..+..||.+.+|.... 
T Consensus      2205 k~~v~~v~r~~sHp~~~-~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~p- 2282 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDP-YYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASP- 2282 (2439)
T ss_pred             ecccCceeeecCCCCCc-eEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCC-
Confidence            34456677777788654 677999999999999877776655443  34566788999999999999999999999762 


Q ss_pred             ceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEe---cCCCcEEEEeCCC--C-EEEEEeeccCCC
Q 022716          141 KPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVG---SADSLVSLWDISE--M-LCVRTFTKLEWP  214 (293)
Q Consensus       141 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g---s~d~~i~iwd~~~--~-~~~~~~~~~~~~  214 (293)
                      ++....                    .+|+.......|-.  ..++++   +.++.+.+||...  + .++.  +.|...
T Consensus      2283 k~~~s~--------------------qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~g 2338 (2439)
T KOG1064|consen 2283 KPYTSW--------------------QCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGG 2338 (2439)
T ss_pred             cceecc--------------------ccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--eecCCC
Confidence            222111                    11222222222211  333443   3567899999642  2 2233  678999


Q ss_pred             eeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEecCCCcceeEECCCCCeEEEEEcCCCCCCCCc
Q 022716          215 VRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADE  282 (293)
Q Consensus       215 v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~  282 (293)
                      ++.++|.|..+.|.+||.+|.|++||++..+.++.++.        ++ ...+|++|+..+++.||..
T Consensus      2339 aT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~--------~~-~~~~f~~~ss~g~ikIw~~ 2397 (2439)
T KOG1064|consen 2339 ATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA--------LD-TREYFVTGSSEGNIKIWRL 2397 (2439)
T ss_pred             ceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh--------hh-hhheeeccCcccceEEEEc
Confidence            99999999999999999999999999988777776653        44 5678999998776666554

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.05  E-value=5.9e-09  Score=85.41  Aligned_cols=161  Identities=14%  Similarity=0.207  Sum_probs=107.9

Q ss_pred             EEEcCCCCCEEEEEeCCCeEEEEeCCCCe----eeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeec
Q 022716           72 LCWDPKHADLIATASGDKTVRLWDARSGK----CSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK  147 (293)
Q Consensus        72 ~~~~~~~~~~l~s~~~d~~i~vwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~  147 (293)
                      +..++ .+.+++.+..+....+++.....    +....-.......+.+..+.....++..-|.++.+|+-+..      
T Consensus        68 ~~~s~-~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~------  140 (390)
T KOG3914|consen   68 VLTSD-SGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSAD------  140 (390)
T ss_pred             cccCC-CceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeeccc------
Confidence            34444 35677777777776676654432    22223333444456665555665555555544444432210      


Q ss_pred             ccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEe-eccCCCeeEEEEccCCCE
Q 022716          148 FGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF-TKLEWPVRTISFSHTGDY  226 (293)
Q Consensus       148 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~-~~~~~~v~~l~~sp~~~~  226 (293)
                                  .+....+.+|-+.++.++++||+++++++..|..|++-.+.....+.++ -+|...|..++.-++ ..
T Consensus       141 ------------~~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~  207 (390)
T KOG3914|consen  141 ------------SGRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YL  207 (390)
T ss_pred             ------------ccCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ce
Confidence                        0222233455667889999999999999999999999888765555554 479889999998654 45


Q ss_pred             EEEecCCCcEEEEEcCCCCEEEEEec
Q 022716          227 IASASEDLFIDISNVHTGRTVHQIPC  252 (293)
Q Consensus       227 l~s~s~d~~i~iw~~~~~~~~~~~~~  252 (293)
                      |++||.|+++++||..+|+.++.++.
T Consensus       208 LlS~sGD~tlr~Wd~~sgk~L~t~dl  233 (390)
T KOG3914|consen  208 LLSGSGDKTLRLWDITSGKLLDTCDL  233 (390)
T ss_pred             eeecCCCCcEEEEecccCCcccccch
Confidence            99999999999999999998876643

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.05  E-value=1.6e-07  Score=79.40  Aligned_cols=259  Identities=20%  Similarity=0.257  Sum_probs=154.3

Q ss_pred             ccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCe--------
Q 022716           19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKT--------   90 (293)
Q Consensus        19 h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~--------   90 (293)
                      ..-++..++|||.|.+|++.... .|.+|.-....    ....+ .| ..|..+.|+|. +.+|+|=+..+.        
T Consensus        31 ~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~----~l~~~-~~-~~V~~~~fSP~-~kYL~tw~~~pi~~pe~e~s  102 (561)
T COG5354          31 ENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKA----KLVRF-RH-PDVKYLDFSPN-EKYLVTWSREPIIEPEIEIS  102 (561)
T ss_pred             cCcchhheeecCcchheehhhcc-ceEEccccchh----heeee-ec-CCceecccCcc-cceeeeeccCCccChhhccC
Confidence            45588999999999999877654 47888654321    11222 23 35778888886 467766554433        


Q ss_pred             -------EEEEeCCCCeeeeeeeecCce----------------------------------------------EEEEEc
Q 022716           91 -------VRLWDARSGKCSQQAELSGEN----------------------------------------------INITYK  117 (293)
Q Consensus        91 -------i~vwd~~~~~~~~~~~~~~~~----------------------------------------------~~~~~~  117 (293)
                             +.+||+.++..+..+......                                              ....++
T Consensus       103 p~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsis  182 (561)
T COG5354         103 PFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKNLRPVGILDFSIS  182 (561)
T ss_pred             CccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEecCCccccCchhhccccceeeEEec
Confidence                   899999888765443322111                                              112344


Q ss_pred             CCC--CEEEE-----EeCCCeEEEEEccccceeeeecc-cceeeeeEEecCCCEEEEec---------------------
Q 022716          118 PDG--THIAV-----GNRDDELTILDVRKFKPIHRRKF-GYEVNEIAWNMTGEMFFLTT---------------------  168 (293)
Q Consensus       118 ~~~--~~l~~-----~~~d~~i~l~d~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~---------------------  168 (293)
                      |.+  ..|+.     ...+.++++|.+.....+....+ ...--.+.|++.++.+.+..                     
T Consensus       183 P~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~  262 (561)
T COG5354         183 PEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRI  262 (561)
T ss_pred             CCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEee
Confidence            432  22222     22445566666554333332221 11112244666555332211                     


Q ss_pred             ----------CCCCEEEEEECCCCCEEEE--ecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCC---
Q 022716          169 ----------GNAGCYCIAIDPMGRYFAV--GSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASED---  233 (293)
Q Consensus       169 ----------~~~~~~~~~~~~~~~~l~~--gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d---  233 (293)
                                ..+++...+|.|.++.+++  |-.+-.+.++|++....   +...+.+=+.+-|||.+++++.++=|   
T Consensus       263 ~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl~---~~~Pe~~rNT~~fsp~~r~il~agF~nl~  339 (561)
T COG5354         263 TERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNLR---FYFPEQKRNTIFFSPHERYILFAGFDNLQ  339 (561)
T ss_pred             cccccceeccccccceeeeecccCCceeEEecccccceeecccccceE---EecCCcccccccccCcccEEEEecCCccc
Confidence                      1245667788888876554  45788899999887622   33445556778899999999887644   


Q ss_pred             CcEEEEEcCCCCEEE-EEecCCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeee
Q 022716          234 LFIDISNVHTGRTVH-QIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE  291 (293)
Q Consensus       234 ~~i~iw~~~~~~~~~-~~~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~  291 (293)
                      |.+.+|+....-++- .+. .....-+.|+|+++++-++-..  .+.+.+-.++||++-
T Consensus       340 gni~i~~~~~rf~~~~~~~-~~n~s~~~wspd~qF~~~~~ts--~k~~~Dn~i~l~~v~  395 (561)
T COG5354         340 GNIEIFDPAGRFKVAGAFN-GLNTSYCDWSPDGQFYDTDTTS--EKLRVDNSIKLWDVY  395 (561)
T ss_pred             cceEEeccCCceEEEEEee-cCCceEeeccCCceEEEecCCC--cccccCcceEEEEec
Confidence            779999987654332 333 3345568999999887665432  224455667888874

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.02  E-value=1e-08  Score=85.26  Aligned_cols=250  Identities=16%  Similarity=0.151  Sum_probs=164.4

Q ss_pred             ccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeC-CCeEEEEeCC
Q 022716           19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASG-DKTVRLWDAR   97 (293)
Q Consensus        19 h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~-d~~i~vwd~~   97 (293)
                      |.+.|+-+.-+ -.+++.+|+.||.+|.|.-..- .+.--...+..|...|..++.+-+ +-++.|.+. |..++++|+.
T Consensus         8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~i-sGvEfVKhFraHL~~I~sl~~S~d-g~L~~Sv~d~Dhs~KvfDvE   84 (558)
T KOG0882|consen    8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRI-SGVEFVKHFRAHLGVILSLAVSYD-GWLFRSVEDPDHSVKVFDVE   84 (558)
T ss_pred             ccceeeeEeee-hhheEEeeecchhhhhcCCCCc-cceeehhhhHHHHHHHHhhhcccc-ceeEeeccCcccceeEEEee
Confidence            77788877654 3568999999999999965420 111112245678888888777654 457778777 9999999987


Q ss_pred             CCeeeeeeeecCceEEEE--EcCCCC--EEEEEe-CCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCC
Q 022716           98 SGKCSQQAELSGENINIT--YKPDGT--HIAVGN-RDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAG  172 (293)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~--~~~~~~--~l~~~~-~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  172 (293)
                      +-.....+.....+-.+.  .+|...  .++++. .++.+.++|-+...+                  ....+..-+..+
T Consensus        85 n~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~------------------q~~~fkklH~sP  146 (558)
T KOG0882|consen   85 NFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFC------------------QDGYFKKLHFSP  146 (558)
T ss_pred             ccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcC------------------ccceecccccCc
Confidence            766554444443333333  333221  233333 467888888654321                  111222335567


Q ss_pred             EEEEEECCCCCEEEEecCCCcEEEEeCCC-CEE--------------EEEeeccCCCeeEEEEccCCCEEEEecCCCcEE
Q 022716          173 CYCIAIDPMGRYFAVGSADSLVSLWDISE-MLC--------------VRTFTKLEWPVRTISFSHTGDYIASASEDLFID  237 (293)
Q Consensus       173 ~~~~~~~~~~~~l~~gs~d~~i~iwd~~~-~~~--------------~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~  237 (293)
                      +.++.+.+.+..+++....|.|..|..+. ...              +..+.....-..++.|+|+|..+++-+.|..|+
T Consensus       147 V~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR  226 (558)
T KOG0882|consen  147 VKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVR  226 (558)
T ss_pred             eEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEE
Confidence            78888999999999999999999998762 111              112234455688999999999999999999999


Q ss_pred             EEEcCCCCEEEEEe---------cCC-------------------------CcceeEECCCCCeEEEEEcCC--CCCCCC
Q 022716          238 ISNVHTGRTVHQIP---------CRA-------------------------AMNSVEWNPKYNLLAYAGDDK--NKYQAD  281 (293)
Q Consensus       238 iw~~~~~~~~~~~~---------~~~-------------------------~i~~~~~sp~~~~la~~~~d~--~~~~~~  281 (293)
                      +..+.+|+.++.+.         .++                         .-..+.|...+++|.+|..=+  -+.+..
T Consensus       227 ~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~gikvin~~t  306 (558)
T KOG0882|consen  227 GFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILGIKVINLDT  306 (558)
T ss_pred             EEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecceeEEEEEeec
Confidence            99999987553221         010                         124678888899999998654  222344


Q ss_pred             cceEEEEe
Q 022716          282 EGVFRIYG  289 (293)
Q Consensus       282 ~~~~~~~~  289 (293)
                      +.++|||.
T Consensus       307 n~v~ri~g  314 (558)
T KOG0882|consen  307 NTVVRILG  314 (558)
T ss_pred             CeEEEEec
Confidence            45566665

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.01  E-value=2.7e-07  Score=72.98  Aligned_cols=206  Identities=15%  Similarity=0.238  Sum_probs=126.6

Q ss_pred             CCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEc--CCCCC-EEEEEeCCCeEEEEeCCCCeeeeeee-ecC------c
Q 022716           41 DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWD--PKHAD-LIATASGDKTVRLWDARSGKCSQQAE-LSG------E  110 (293)
Q Consensus        41 dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~--~~~~~-~l~s~~~d~~i~vwd~~~~~~~~~~~-~~~------~  110 (293)
                      -|.+.+|++.+........+....| ..+..+.|.  +.+++ .++-+-..|.|.++..........+. ...      .
T Consensus        45 ~Gkl~Lys~~d~~~~~l~~~q~~dt-s~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~  123 (339)
T KOG0280|consen   45 SGKLHLYSLEDMKLSPLDTLQCTDT-STEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVE  123 (339)
T ss_pred             ccceEEEeecccccCccceeeeecc-cccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhhee
Confidence            3667788876543222222222233 334555553  23333 45556667888888654332211111 111      2


Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECC-CCCEEEEec
Q 022716          111 NINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDP-MGRYFAVGS  189 (293)
Q Consensus       111 ~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~gs  189 (293)
                      ..++.|++.+..++++..+|.+.+.+...........         |         ..++..+....|+. +.+.+.+|+
T Consensus       124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~---------w---------k~He~E~Wta~f~~~~pnlvytGg  185 (339)
T KOG0280|consen  124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQT---------W---------KVHEFEAWTAKFSDKEPNLVYTGG  185 (339)
T ss_pred             eeEEEeeccCceEEEEcCCCcEEEEecceeeeeeccc---------c---------cccceeeeeeecccCCCceEEecC
Confidence            3467889999999999999988865543322111000         1         11222233344443 347889999


Q ss_pred             CCCcEEEEeCC-CCEEEEE-eeccCCCeeEEEEcc-CCCEEEEecCCCcEEEEEcC-CCCEEEEEecCCCcceeEECCCC
Q 022716          190 ADSLVSLWDIS-EMLCVRT-FTKLEWPVRTISFSH-TGDYIASASEDLFIDISNVH-TGRTVHQIPCRAAMNSVEWNPKY  265 (293)
Q Consensus       190 ~d~~i~iwd~~-~~~~~~~-~~~~~~~v~~l~~sp-~~~~l~s~s~d~~i~iw~~~-~~~~~~~~~~~~~i~~~~~sp~~  265 (293)
                      +|+.+..||++ ..+.+-. .+.|...|.+|.-+| .+.+++||+.|..|++||.+ -++.+..-+..+.|..+.++|.-
T Consensus       186 DD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~  265 (339)
T KOG0280|consen  186 DDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEI  265 (339)
T ss_pred             CCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchh
Confidence            99999999998 4443433 456788899987775 57899999999999999998 46666655556789999999853

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.01  E-value=1e-08  Score=89.90  Aligned_cols=245  Identities=17%  Similarity=0.225  Sum_probs=158.4

Q ss_pred             ceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEE
Q 022716           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (293)
Q Consensus        13 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~   92 (293)
                      .+.+.||++.|.-+.|+.+...|-|...+|-|.+|-+.....-.-.  .-...+..|.+++|+.++ ..+.-.-.||.|.
T Consensus        64 NQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEM--iNnRnKSvV~SmsWn~dG-~kIcIvYeDGavI  140 (1189)
T KOG2041|consen   64 NQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEM--INNRNKSVVVSMSWNLDG-TKICIVYEDGAVI  140 (1189)
T ss_pred             hhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHH--hhCcCccEEEEEEEcCCC-cEEEEEEccCCEE
Confidence            4678899999999999998888999999999999988643210000  001234568899998875 4566677788877


Q ss_pred             EEeCCCCeeeeeeeecCc-eEEEEEcCCCCEEEEEeCCCeEEEEEccccceeee------------ecccceeeeeEEec
Q 022716           93 LWDARSGKCSQQAELSGE-NINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR------------RKFGYEVNEIAWNM  159 (293)
Q Consensus        93 vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~------------~~~~~~~~~v~~~~  159 (293)
                      +=.++..+ +.--++.+. ...+.|++|.+.++.+-..|.++++|....-..+.            ..++..+..+.|..
T Consensus       141 VGsvdGNR-IwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~  219 (1189)
T KOG2041|consen  141 VGSVDGNR-IWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNT  219 (1189)
T ss_pred             EEeeccce-ecchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeecc
Confidence            65554332 221122222 23588999999999998999999999754321111            01222333344432


Q ss_pred             CCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCC-EEEEEeeccCCCeeEEEEccCCCEEEEecCCC----
Q 022716          160 TGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM-LCVRTFTKLEWPVRTISFSHTGDYIASASEDL----  234 (293)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~-~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~----  234 (293)
                      ..             -.-+-|+...++++-.+|.+.|..-.+- .++ .+ .....+....|+|+|..||.++.|.    
T Consensus       220 g~-------------~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pv-v~-dtgm~~vgakWnh~G~vLAvcG~~~da~~  284 (1189)
T KOG2041|consen  220 GP-------------YQPVPPDRPRLAVCYANGRMQIMRSENDPEPV-VV-DTGMKIVGAKWNHNGAVLAVCGNDSDADE  284 (1189)
T ss_pred             Cc-------------cccCCCCCCEEEEEEcCceehhhhhcCCCCCe-EE-ecccEeecceecCCCcEEEEccCcccccC
Confidence            11             1123478889999999999988865432 222 22 2236788899999999999987642    


Q ss_pred             -----cEEEEEcCCCCEEEEEec-CCCcceeEECCCCCeEEEEEcCCCCC
Q 022716          235 -----FIDISNVHTGRTVHQIPC-RAAMNSVEWNPKYNLLAYAGDDKNKY  278 (293)
Q Consensus       235 -----~i~iw~~~~~~~~~~~~~-~~~i~~~~~sp~~~~la~~~~d~~~~  278 (293)
                           .|.++.. -|+.+..++. ...|++++|-..|-.+|.+- |+.+|
T Consensus       285 ~~d~n~v~Fysp-~G~i~gtlkvpg~~It~lsWEg~gLriA~Av-dsfiy  332 (1189)
T KOG2041|consen  285 PTDSNKVHFYSP-YGHIVGTLKVPGSCITGLSWEGTGLRIAIAV-DSFIY  332 (1189)
T ss_pred             ccccceEEEecc-chhheEEEecCCceeeeeEEcCCceEEEEEe-cceEE
Confidence                 3444433 3455555543 45699999998888888874 44444

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.01  E-value=2.6e-10  Score=101.88  Aligned_cols=222  Identities=17%  Similarity=0.253  Sum_probs=147.2

Q ss_pred             cceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCC-e
Q 022716           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDK-T   90 (293)
Q Consensus        12 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~-~   90 (293)
                      ..+.|..|.+.-+|++|+-..+.|+.|+..|.|+++++.++..    .-...+|..+|+.+.-+.+++-+|.+++... .
T Consensus      1093 ~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~----e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pl 1168 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSM----EESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPL 1168 (1516)
T ss_pred             cchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccc----cccccccccccccccccCCcceeeeeccccCch
Confidence            3455778899999999999999999999999999999986422    2245689999998877766655565555544 5


Q ss_pred             EEEEeCCCC-eeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecC
Q 022716           91 VRLWDARSG-KCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG  169 (293)
Q Consensus        91 i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  169 (293)
                      ..+|+.... ...+.+   ..-.++.|+..-..-+.|+......+||+.+..++...--+...                .
T Consensus      1169 saLW~~~s~~~~~Hsf---~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~----------------~ 1229 (1516)
T KOG1832|consen 1169 SALWDASSTGGPRHSF---DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVT----------------S 1229 (1516)
T ss_pred             HHHhccccccCccccc---cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchh----------------h
Confidence            678987542 111111   22235666655455566766677899999987766542211000                0


Q ss_pred             CCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEE
Q 022716          170 NAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQ  249 (293)
Q Consensus       170 ~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~  249 (293)
                      +-.-.+..|+|++.+++   .||  .+||.+..+.++.|-.....+. =.|+|.|..++..++     |||+++.+.++.
T Consensus      1230 ~y~~n~a~FsP~D~LIl---ndG--vLWDvR~~~aIh~FD~ft~~~~-G~FHP~g~eVIINSE-----IwD~RTF~lLh~ 1298 (1516)
T KOG1832|consen 1230 SYSNNLAHFSPCDTLIL---NDG--VLWDVRIPEAIHRFDQFTDYGG-GGFHPSGNEVIINSE-----IWDMRTFKLLHS 1298 (1516)
T ss_pred             hhhccccccCCCcceEe---eCc--eeeeeccHHHHhhhhhheeccc-ccccCCCceEEeech-----hhhhHHHHHHhc
Confidence            00113567889888776   344  4799887766655544332222 248999998888765     999999888876


Q ss_pred             EecCCCcceeEECCCCCeE
Q 022716          250 IPCRAAMNSVEWNPKYNLL  268 (293)
Q Consensus       250 ~~~~~~i~~~~~sp~~~~l  268 (293)
                      .+.-. -..|.|+..|+.+
T Consensus      1299 VP~Ld-qc~VtFNstG~Vm 1316 (1516)
T KOG1832|consen 1299 VPSLD-QCAVTFNSTGDVM 1316 (1516)
T ss_pred             Ccccc-ceEEEeccCccch
Confidence            65321 2467888877653

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.00  E-value=2.9e-08  Score=79.09  Aligned_cols=245  Identities=14%  Similarity=0.211  Sum_probs=139.3

Q ss_pred             ccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCC-CCceeEEEeeCCc------------CCeeEEEEcC-CCCCEEEE
Q 022716           19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHG-HGKVKDIELRGHA------------DSVDQLCWDP-KHADLIAT   84 (293)
Q Consensus        19 h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~-~~~~~~~~~~~h~------------~~i~~~~~~~-~~~~~l~s   84 (293)
                      ....|+++.|...|.+|+||...|.|.+|.-.... +.-.-...+++|.            ..|..+.|.. .+...++-
T Consensus        25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl  104 (460)
T COG5170          25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL  104 (460)
T ss_pred             ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence            35689999999999999999999999999654211 1000011244553            3467777743 33445556


Q ss_pred             EeCCCeEEEEeCCCCeeeeee--eecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCC
Q 022716           85 ASGDKTVRLWDARSGKCSQQA--ELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGE  162 (293)
Q Consensus        85 ~~~d~~i~vwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~  162 (293)
                      .+.|.+|++|.+.........  .+..   ++. +|-+--+.+   -..+++           ..+...-..++-  ...
T Consensus       105 stNdktiKlWKiyeknlk~va~nnls~---~~~-~~~~g~~~s---~~~l~l-----------prls~hd~iiaa--~p~  164 (460)
T COG5170         105 STNDKTIKLWKIYEKNLKVVAENNLSD---SFH-SPMGGPLTS---TKELLL-----------PRLSEHDEIIAA--KPC  164 (460)
T ss_pred             ecCCceeeeeeeecccchhhhcccccc---ccc-cccCCCcCC---HHHhhc-----------ccccccceEEEe--ccc
Confidence            789999999998654321110  0110   111 111100000   000000           000000000100  011


Q ss_pred             EEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCC---EEEEEeeccC-----CCeeEEEEccCC-CEEEEecCC
Q 022716          163 MFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM---LCVRTFTKLE-----WPVRTISFSHTG-DYIASASED  233 (293)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~---~~~~~~~~~~-----~~v~~l~~sp~~-~~l~s~s~d  233 (293)
                      ++....+.-.+.++.+..+...++++ .|=.|.+|++...   ..+--++.|.     .-|++..|+|.. ..+.-.+..
T Consensus       165 rvyaNaH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSk  243 (460)
T COG5170         165 RVYANAHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSK  243 (460)
T ss_pred             eeccccceeEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCC
Confidence            12222344456788888888877765 4678999997532   1222333332     358889999974 566777888


Q ss_pred             CcEEEEEcCCCC------EEEE--Ee---------cCCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeeecC
Q 022716          234 LFIDISNVHTGR------TVHQ--IP---------CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFENA  293 (293)
Q Consensus       234 ~~i~iw~~~~~~------~~~~--~~---------~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~~~  293 (293)
                      |.|++-|++...      ++..  +.         .-++|..+.|+|+|.+|++-+.         -++|||++.++
T Consensus       244 G~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy---------ltvkiwDvnm~  311 (460)
T COG5170         244 GEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY---------LTVKIWDVNMA  311 (460)
T ss_pred             CcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc---------ceEEEEecccc
Confidence            999999987321      1111  11         1246778999999999998764         47999987653

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=98.99  E-value=5e-08  Score=78.67  Aligned_cols=204  Identities=15%  Similarity=0.191  Sum_probs=140.5

Q ss_pred             ccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCC
Q 022716           19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS   98 (293)
Q Consensus        19 h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~   98 (293)
                      -.++++++++.++...|+.|-..|++.-+.+...-..-........|...+..+.|+.. ...+++.+.|..+.---.+.
T Consensus        67 mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~-~e~V~s~~~dk~~~~hc~e~  145 (404)
T KOG1409|consen   67 MPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLT-HEWVLSTGKDKQFAWHCTES  145 (404)
T ss_pred             CCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCC-ceeEEEeccccceEEEeecc
Confidence            35789999999999999999999999988775422111112234579999999988754 56888999998865433445


Q ss_pred             CeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEE
Q 022716           99 GKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAI  178 (293)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  178 (293)
                      +..+..+.+........+.-.  +..+|...+.+....+....                  -+....+..+.+.++++++
T Consensus       146 ~~~lg~Y~~~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~------------------~~~i~~~~~h~~~~~~l~W  205 (404)
T KOG1409|consen  146 GNRLGGYNFETPASALQFDAL--YAFVGDHSGQITMLKLEQNG------------------CQLITTFNGHTGEVTCLKW  205 (404)
T ss_pred             CCcccceEeeccCCCCceeeE--EEEecccccceEEEEEeecC------------------CceEEEEcCcccceEEEEE
Confidence            444433333332222222211  44555555555544332211                  1112334456677899999


Q ss_pred             CCCCCEEEEecCCCcEEEEeCCCC-EEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCC
Q 022716          179 DPMGRYFAVGSADSLVSLWDISEM-LCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHT  243 (293)
Q Consensus       179 ~~~~~~l~~gs~d~~i~iwd~~~~-~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~  243 (293)
                      +|....+.+|..|..+.+||+--. ....++.+|...|.++++.+--+.+.+++.|+.|-+|+..-
T Consensus       206 d~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~  271 (404)
T KOG1409|consen  206 DPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV  271 (404)
T ss_pred             cCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence            999999999999999999998532 22446778999999999998899999999999999998753

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.99  E-value=6.6e-07  Score=75.36  Aligned_cols=219  Identities=16%  Similarity=0.125  Sum_probs=137.9

Q ss_pred             CCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCC--------cCCeeEE-EEcCCCCCEEEEEeCCCeEEEEeCCCC
Q 022716           29 NCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGH--------ADSVDQL-CWDPKHADLIATASGDKTVRLWDARSG   99 (293)
Q Consensus        29 s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h--------~~~i~~~-~~~~~~~~~l~s~~~d~~i~vwd~~~~   99 (293)
                      +.||++++.. .-|.|.+||.+...... ..+.++-.        ..+...+ .|++.+++.++..|. |.+.+.+.-.+
T Consensus       275 nsDGkrIvFq-~~GdIylydP~td~lek-ldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~  351 (668)
T COG4946         275 NSDGKRIVFQ-NAGDIYLYDPETDSLEK-LDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDG  351 (668)
T ss_pred             CCCCcEEEEe-cCCcEEEeCCCcCccee-eecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCC
Confidence            4578887643 34789999876532211 11111110        1111111 134445667766654 45555554333


Q ss_pred             eeeeeeeecCceEEEEEcCCCCEEEEEeCCC-eEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEE
Q 022716          100 KCSQQAELSGENINITYKPDGTHIAVGNRDD-ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAI  178 (293)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~-~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  178 (293)
                      -.++ ....+.+.-..+.-+++.++.|..|| .+-++|.++.+..+                     +...-+.+.++.+
T Consensus       352 ~~iq-v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr---------------------~e~~lg~I~av~v  409 (668)
T COG4946         352 YSIQ-VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR---------------------IEKDLGNIEAVKV  409 (668)
T ss_pred             eeEE-cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE---------------------eeCCccceEEEEE
Confidence            2222 22334455556666777899999998 89999987754222                     1122345668899


Q ss_pred             CCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCc----EEEEEcCCCCEEEEEecCC
Q 022716          179 DPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLF----IDISNVHTGRTVHQIPCRA  254 (293)
Q Consensus       179 ~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~----i~iw~~~~~~~~~~~~~~~  254 (293)
                      +|+|+.++++.....|.+.|+.++.....-+....-|+...|||+++++|-+-.+|.    |+++|...++.........
T Consensus       410 s~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta  489 (668)
T COG4946         410 SPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTA  489 (668)
T ss_pred             cCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcc
Confidence            999999999999999999999998754333334457999999999999999987764    7899998877654433222


Q ss_pred             CcceeEECCCCCeEEEEE
Q 022716          255 AMNSVEWNPKYNLLAYAG  272 (293)
Q Consensus       255 ~i~~~~~sp~~~~la~~~  272 (293)
                      ---+=+|.|++++|-.=+
T Consensus       490 ~DfsPaFD~d~ryLYfLs  507 (668)
T COG4946         490 YDFSPAFDPDGRYLYFLS  507 (668)
T ss_pred             cccCcccCCCCcEEEEEe
Confidence            334567888988755444

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.98  E-value=1.4e-09  Score=61.03  Aligned_cols=37  Identities=46%  Similarity=0.832  Sum_probs=34.9

Q ss_pred             cceeecCccccEEEEEECCCCCeEEEEeCCCcEEEee
Q 022716           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWH   48 (293)
Q Consensus        12 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~   48 (293)
                      +.+.+.+|.+.|.+++|+|++++|++|+.|+.|++||
T Consensus         3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            4577899999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.97  E-value=1.7e-08  Score=82.83  Aligned_cols=166  Identities=16%  Similarity=0.188  Sum_probs=104.0

Q ss_pred             cEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCC--ceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCC
Q 022716           22 KVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHG--KVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG   99 (293)
Q Consensus        22 ~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~--~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~   99 (293)
                      .+..+..++.++.+|.+..+....++++..+...  ......+..-...+..+..... ..+...++....+.+|....+
T Consensus        64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~s-v~v~dkagD~~~~di~s~~~~  142 (390)
T KOG3914|consen   64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTS-VLVADKAGDVYSFDILSADSG  142 (390)
T ss_pred             cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccce-EEEEeecCCceeeeeeccccc
Confidence            3445566788888998888888878887654321  1111122222223444433221 122333455566777776656


Q ss_pred             eeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEEC
Q 022716          100 KCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAID  179 (293)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  179 (293)
                      .+...+.+-.....++++||++.++++..|..|++-.......+....+                   .|..-+..+++.
T Consensus       143 ~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfcl-------------------GH~eFVS~isl~  203 (390)
T KOG3914|consen  143 RCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCL-------------------GHKEFVSTISLT  203 (390)
T ss_pred             CcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhcc-------------------ccHhheeeeeec
Confidence            6555555555667899999999999999999999876554332222221                   223334455554


Q ss_pred             CCCCEEEEecCCCcEEEEeCCCCEEEEEe
Q 022716          180 PMGRYFAVGSADSLVSLWDISEMLCVRTF  208 (293)
Q Consensus       180 ~~~~~l~~gs~d~~i~iwd~~~~~~~~~~  208 (293)
                      + +..|++|+.|++|++||++++.++.++
T Consensus       204 ~-~~~LlS~sGD~tlr~Wd~~sgk~L~t~  231 (390)
T KOG3914|consen  204 D-NYLLLSGSGDKTLRLWDITSGKLLDTC  231 (390)
T ss_pred             c-CceeeecCCCCcEEEEecccCCccccc
Confidence            4 555899999999999999999887655

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.95  E-value=5.3e-06  Score=67.71  Aligned_cols=228  Identities=15%  Similarity=0.210  Sum_probs=139.4

Q ss_pred             cEEEEEECCCCCeEEEEeC-CCcEEEeecCCCCCCceeEEEeeCCcCC----------eeEEEEcCCCCCEEEEE-eCCC
Q 022716           22 KVHSVAWNCTGTKLASGSV-DQTARVWHIEPHGHGKVKDIELRGHADS----------VDQLCWDPKHADLIATA-SGDK   89 (293)
Q Consensus        22 ~v~~l~~s~~~~~l~s~~~-dg~v~iw~~~~~~~~~~~~~~~~~h~~~----------i~~~~~~~~~~~~l~s~-~~d~   89 (293)
                      +-..++++++|++++++.. -|.|.++-+...+.... ......|.+.          +....+.|++. +|++. -.--
T Consensus        90 ~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~-~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~-~l~v~DLG~D  167 (346)
T COG2706          90 PPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQP-VVQVVKHTGSGPHERQESPHVHSANFTPDGR-YLVVPDLGTD  167 (346)
T ss_pred             CCeEEEECCCCCEEEEEEccCceEEEEEcccCCcccc-ceeeeecCCCCCCccccCCccceeeeCCCCC-EEEEeecCCc
Confidence            3478899999999998877 58999998865432111 1122234333          77778889754 54444 3345


Q ss_pred             eEEEEeCCCCeeeeee----eecCceEEEEEcCCCCEEEEEeC-CCeEEEEEcccc-ceeeeecccceeeeeEEecCCCE
Q 022716           90 TVRLWDARSGKCSQQA----ELSGENINITYKPDGTHIAVGNR-DDELTILDVRKF-KPIHRRKFGYEVNEIAWNMTGEM  163 (293)
Q Consensus        90 ~i~vwd~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~-d~~i~l~d~~~~-~~~~~~~~~~~~~~v~~~~~~~~  163 (293)
                      .|.+|++..+......    .-...+..++|+|++++..+..+ +++|.+|..... ......      +.+.--|..  
T Consensus       168 ri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~l------Q~i~tlP~d--  239 (346)
T COG2706         168 RIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEEL------QTIDTLPED--  239 (346)
T ss_pred             eEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEe------eeeccCccc--
Confidence            7889999877654322    22345678999999998877765 899999998764 111111      101000100  


Q ss_pred             EEEecCCCCEEEEEECCCCCEEEEecC-CCcEEEEeCCCC-EEEEEe---eccCCCeeEEEEccCCCEEEEecCCC-cEE
Q 022716          164 FFLTTGNAGCYCIAIDPMGRYFAVGSA-DSLVSLWDISEM-LCVRTF---TKLEWPVRTISFSHTGDYIASASEDL-FID  237 (293)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~l~~gs~-d~~i~iwd~~~~-~~~~~~---~~~~~~v~~l~~sp~~~~l~s~s~d~-~i~  237 (293)
                         -.+....-.|.++|+|++|-++.. ...|.+|.+... ..+...   ..+....+...|+|.|++|+.+.+|. .|.
T Consensus       240 ---F~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~  316 (346)
T COG2706         240 ---FTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNIT  316 (346)
T ss_pred             ---cCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEE
Confidence               012334567889999999887754 457888876532 222222   22334478899999999999988664 377


Q ss_pred             EEEcC--CCCEEEE--EecCCCcceeEEC
Q 022716          238 ISNVH--TGRTVHQ--IPCRAAMNSVEWN  262 (293)
Q Consensus       238 iw~~~--~~~~~~~--~~~~~~i~~~~~s  262 (293)
                      ++...  +|++-..  ........||.|.
T Consensus       317 vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~  345 (346)
T COG2706         317 VFERDKETGRLTLLGRYAVVPEPVCVKFL  345 (346)
T ss_pred             EEEEcCCCceEEecccccCCCCcEEEEEc
Confidence            77554  4553221  1122234566664

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.95  E-value=6.2e-07  Score=70.96  Aligned_cols=201  Identities=14%  Similarity=0.148  Sum_probs=107.5

Q ss_pred             cEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCcee-EEEeeC-CcCCeeEEEEcCCC-----CCEEEEEeCCCeEEEE
Q 022716           22 KVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVK-DIELRG-HADSVDQLCWDPKH-----ADLIATASGDKTVRLW   94 (293)
Q Consensus        22 ~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~-~~~~~~-h~~~i~~~~~~~~~-----~~~l~s~~~d~~i~vw   94 (293)
                      .=..++||||+..||.+.+.|+|+++|+.....-.+. ...+.+ -...|..+.|.+-.     ...|+....+|.++-|
T Consensus        45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy  124 (282)
T PF15492_consen   45 QWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY  124 (282)
T ss_pred             hheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence            4568999999999999999999999998631100000 000111 12345555553211     2245556778887766


Q ss_pred             eCCC-----Ceeeeeeee----cCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEE
Q 022716           95 DARS-----GKCSQQAEL----SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFF  165 (293)
Q Consensus        95 d~~~-----~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  165 (293)
                      -+-.     .+....+.+    ...+.++.++|..+.|++|+....=      + ........+.    .+|-       
T Consensus       125 ~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~------~-~~s~a~~~GL----taWR-------  186 (282)
T PF15492_consen  125 LVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQ------D-GMSKASSCGL----TAWR-------  186 (282)
T ss_pred             EEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCC------C-ccccccccCc----eEEE-------
Confidence            6422     122233333    2345678899998888888754320      0 0000000010    1110       


Q ss_pred             EecCCCCEEEEEECCCCCEEEEecCCC------cEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEE
Q 022716          166 LTTGNAGCYCIAIDPMGRYFAVGSADS------LVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDIS  239 (293)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~l~~gs~d~------~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw  239 (293)
                      +..+         .|.... ++...|+      +-.+|.+-+.............|..+..||||+.||+...+|.|.+|
T Consensus       187 iL~~---------~Pyyk~-v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW  256 (282)
T PF15492_consen  187 ILSD---------SPYYKQ-VTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLW  256 (282)
T ss_pred             EcCC---------CCcEEE-ccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEE
Confidence            0000         111111 1111111      12334333222111112345679999999999999999999999999


Q ss_pred             EcCCCCEEEEE
Q 022716          240 NVHTGRTVHQI  250 (293)
Q Consensus       240 ~~~~~~~~~~~  250 (293)
                      ++..-+..+..
T Consensus       257 ~iPsL~~~~~W  267 (282)
T PF15492_consen  257 EIPSLRLQRSW  267 (282)
T ss_pred             ecCcchhhccc
Confidence            99876655544

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.90  E-value=6.9e-09  Score=58.12  Aligned_cols=38  Identities=34%  Similarity=0.560  Sum_probs=36.1

Q ss_pred             EEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEE
Q 022716          203 LCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISN  240 (293)
Q Consensus       203 ~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~  240 (293)
                      +++.++.+|..+|.+|+|+|++++|++|+.|+.|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            56788999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.85  E-value=6.2e-06  Score=70.14  Aligned_cols=198  Identities=15%  Similarity=0.261  Sum_probs=122.8

Q ss_pred             CeeEEEEcCCC-CCEEEE-----EeCCCeEEEEeCCCCeeeeeee-ecCceEEEEEcCCCCEEEEEe-----------CC
Q 022716           68 SVDQLCWDPKH-ADLIAT-----ASGDKTVRLWDARSGKCSQQAE-LSGENINITYKPDGTHIAVGN-----------RD  129 (293)
Q Consensus        68 ~i~~~~~~~~~-~~~l~s-----~~~d~~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-----------~d  129 (293)
                      .|....++|.+ +..|+.     .+.+.++++|.+..+..+..-. +......+.|.+.|+++++--           ..
T Consensus       175 gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfge  254 (561)
T COG5354         175 GILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGE  254 (561)
T ss_pred             ceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceecc
Confidence            45666777762 222221     2446778888876554433322 233445677888888765421           23


Q ss_pred             CeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCC--------------------EEEEEECCCCCEEEEec
Q 022716          130 DELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAG--------------------CYCIAIDPMGRYFAVGS  189 (293)
Q Consensus       130 ~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~l~~gs  189 (293)
                      .++.|++++.....-.......|.++.|.|.+..+.+..+-.+                    -.-+.|+|.+++++.++
T Consensus       255 snLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl~~~~Pe~~rNT~~fsp~~r~il~ag  334 (561)
T COG5354         255 SNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNLRFYFPEQKRNTIFFSPHERYILFAG  334 (561)
T ss_pred             ceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccceEEecCCcccccccccCcccEEEEec
Confidence            5677888774332222234567889999998887766653211                    12356889999988865


Q ss_pred             CC---CcEEEEeCCCCE-EEEEeeccCCCeeEEEEccCCCEEEEec------CCCcEEEEEcCCCCEEEEEecCCCccee
Q 022716          190 AD---SLVSLWDISEML-CVRTFTKLEWPVRTISFSHTGDYIASAS------EDLFIDISNVHTGRTVHQIPCRAAMNSV  259 (293)
Q Consensus       190 ~d---~~i~iwd~~~~~-~~~~~~~~~~~v~~l~~sp~~~~l~s~s------~d~~i~iw~~~~~~~~~~~~~~~~i~~~  259 (293)
                      -|   |.+.+||..... ++..+.+.  .-..+.|+|+++++.+.-      .|..|+||++.... +.      ....+
T Consensus       335 F~nl~gni~i~~~~~rf~~~~~~~~~--n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~-~f------el~~~  405 (561)
T COG5354         335 FDNLQGNIEIFDPAGRFKVAGAFNGL--NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAK-VF------ELTNI  405 (561)
T ss_pred             CCccccceEEeccCCceEEEEEeecC--CceEeeccCCceEEEecCCCcccccCcceEEEEecCch-hh------hhhhc
Confidence            54   679999986543 33344332  345577999999987763      37889999985432 11      46678


Q ss_pred             EECCCCCeEEEEEcC
Q 022716          260 EWNPKYNLLAYAGDD  274 (293)
Q Consensus       260 ~~sp~~~~la~~~~d  274 (293)
                      .|.|.+++.-+.+.+
T Consensus       406 ~W~p~~~~~ttsSs~  420 (561)
T COG5354         406 TWDPSGQYVTTSSSC  420 (561)
T ss_pred             cccCCcccceeeccC
Confidence            888888776555544

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.81  E-value=3.9e-06  Score=79.61  Aligned_cols=228  Identities=16%  Similarity=0.215  Sum_probs=142.1

Q ss_pred             cccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEee-CCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCC-
Q 022716           20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELR-GHADSVDQLCWDPKHADLIATASGDKTVRLWDAR-   97 (293)
Q Consensus        20 ~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~-~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~-   97 (293)
                      .+.|.++.|-++...++.+..+|.|.+...+.......  ++.. .-...|.+++|+|+. ++|+-+..++++.+..-. 
T Consensus        75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~--~E~VG~vd~GI~a~~WSPD~-Ella~vT~~~~l~~mt~~f  151 (928)
T PF04762_consen   75 NDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE--IEIVGSVDSGILAASWSPDE-ELLALVTGEGNLLLMTRDF  151 (928)
T ss_pred             CCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce--eEEEEEEcCcEEEEEECCCc-CEEEEEeCCCEEEEEeccc
Confidence            46899999999999999999999999983322111111  1222 235679999999985 677777778887765311 


Q ss_pred             --------------CCeeee------eee---------------------------ecCceEEEEEcCCCCEEEEEeC--
Q 022716           98 --------------SGKCSQ------QAE---------------------------LSGENINITYKPDGTHIAVGNR--  128 (293)
Q Consensus        98 --------------~~~~~~------~~~---------------------------~~~~~~~~~~~~~~~~l~~~~~--  128 (293)
                                    ..+.+.      ..+                           .......++|-.||+++++.+-  
T Consensus       152 d~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~  231 (928)
T PF04762_consen  152 DPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEP  231 (928)
T ss_pred             eEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEc
Confidence                          000000      000                           1112345778889999888774  


Q ss_pred             -C---CeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecC---CCcEEEEeCCC
Q 022716          129 -D---DELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSA---DSLVSLWDISE  201 (293)
Q Consensus       129 -d---~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~---d~~i~iwd~~~  201 (293)
                       +   ..+++|+-+ +.......   +                 -++--.+++|-|.|+++|+...   .-.|.+|. ++
T Consensus       232 ~~~~~R~iRVy~Re-G~L~stSE---~-----------------v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rN  289 (928)
T PF04762_consen  232 ETGSRRVIRVYSRE-GELQSTSE---P-----------------VDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RN  289 (928)
T ss_pred             CCCceeEEEEECCC-ceEEeccc---c-----------------CCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cC
Confidence             2   357777743 11111000   0                 0111236788888888888764   23455555 56


Q ss_pred             CEEEEEeec----cCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCE--EEEE--ecCCCcceeEECCCC-CeEEEEE
Q 022716          202 MLCVRTFTK----LEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRT--VHQI--PCRAAMNSVEWNPKY-NLLAYAG  272 (293)
Q Consensus       202 ~~~~~~~~~----~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~--~~~~--~~~~~i~~~~~sp~~-~~la~~~  272 (293)
                      |.+...|.-    ....|..++|++|+..||..-.|. |.+|.....+-  ...+  .....+..+.|+|.. ..|....
T Consensus       290 GLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t  368 (928)
T PF04762_consen  290 GLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLT  368 (928)
T ss_pred             CcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEe
Confidence            655555542    345799999999999999977666 99999888753  2223  334456679999965 4455555


Q ss_pred             c
Q 022716          273 D  273 (293)
Q Consensus       273 ~  273 (293)
                      .
T Consensus       369 ~  369 (928)
T PF04762_consen  369 S  369 (928)
T ss_pred             c
Confidence            4

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.80  E-value=3.9e-05  Score=62.10  Aligned_cols=216  Identities=15%  Similarity=0.170  Sum_probs=131.4

Q ss_pred             EEEECC-CCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeee
Q 022716           25 SVAWNC-TGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQ  103 (293)
Q Consensus        25 ~l~~s~-~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~  103 (293)
                      ++.|.+ ++.++++--..+.|..|+....   ......+.+    ...+.+...++. |+.+...+. .++|..+++...
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~---~~~~~~~~~----~~G~~~~~~~g~-l~v~~~~~~-~~~d~~~g~~~~   74 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTG---EVEVIDLPG----PNGMAFDRPDGR-LYVADSGGI-AVVDPDTGKVTV   74 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTT---EEEEEESSS----EEEEEEECTTSE-EEEEETTCE-EEEETTTTEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCC---eEEEEecCC----CceEEEEccCCE-EEEEEcCce-EEEecCCCcEEE
Confidence            577887 6666677767899999988642   222222222    455566633344 444555444 555998886655


Q ss_pred             eeeec------CceEEEEEcCCCCEEEEEeCC--------CeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecC
Q 022716          104 QAELS------GENINITYKPDGTHIAVGNRD--------DELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG  169 (293)
Q Consensus       104 ~~~~~------~~~~~~~~~~~~~~l~~~~~d--------~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  169 (293)
                      .....      ..+..+++.|+|+..++....        +.+..++.. .+                     ...+...
T Consensus        75 ~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~---------------------~~~~~~~  132 (246)
T PF08450_consen   75 LADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GK---------------------VTVVADG  132 (246)
T ss_dssp             EEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SE---------------------EEEEEEE
T ss_pred             EeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-Ce---------------------EEEEecC
Confidence            44431      123468899999877666533        335555544 11                     1111112


Q ss_pred             CCCEEEEEECCCCCEE-EEecCCCcEEEEeCC--CC--EEEEEeec---cCCCeeEEEEccCCCEEEEecCCCcEEEEEc
Q 022716          170 NAGCYCIAIDPMGRYF-AVGSADSLVSLWDIS--EM--LCVRTFTK---LEWPVRTISFSHTGDYIASASEDLFIDISNV  241 (293)
Q Consensus       170 ~~~~~~~~~~~~~~~l-~~gs~d~~i~iwd~~--~~--~~~~~~~~---~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~  241 (293)
                      -....-|+++|+++.| ++-+..+.|..+++.  ..  ...+.+..   .......+++.++|+..++.-..+.|.+++.
T Consensus       133 ~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p  212 (246)
T PF08450_consen  133 LGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDP  212 (246)
T ss_dssp             ESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEET
T ss_pred             cccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECC
Confidence            2234568889999865 466778889999875  22  11122222   2223788999999998888888899999998


Q ss_pred             CCCCEEEEEecC-CCcceeEE-CCCCCeEEEEE
Q 022716          242 HTGRTVHQIPCR-AAMNSVEW-NPKYNLLAYAG  272 (293)
Q Consensus       242 ~~~~~~~~~~~~-~~i~~~~~-sp~~~~la~~~  272 (293)
                      . |+.+..+... ..+++++| .|+.+.|..++
T Consensus       213 ~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  213 D-GKLLREIELPVPRPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             T-SCEEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred             C-ccEEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence            7 8888776554 57889999 46766555443

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.80  E-value=5.2e-08  Score=83.33  Aligned_cols=170  Identities=19%  Similarity=0.279  Sum_probs=114.2

Q ss_pred             EEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCC-------eeeeeeeec-CceEEEEEcCCCCEEEEEeCCCe
Q 022716           60 IELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG-------KCSQQAELS-GENINITYKPDGTHIAVGNRDDE  131 (293)
Q Consensus        60 ~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~-------~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~  131 (293)
                      ..+.||...|..+.-. ++.+-+++++.|++|++|.++..       .|..+++.+ .++..+.|-.+-++++++  |+.
T Consensus       729 ~nf~GH~~~iRai~Ai-dNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~g  805 (1034)
T KOG4190|consen  729 CNFTGHQEKIRAIAAI-DNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGG  805 (1034)
T ss_pred             ecccCcHHHhHHHHhc-ccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCc
Confidence            4567898888877543 34566889999999999998643       244444433 344467777776666654  899


Q ss_pred             EEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEe-cCCCcEEEEeCCCCEEEEEeec
Q 022716          132 LTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVG-SADSLVSLWDISEMLCVRTFTK  210 (293)
Q Consensus       132 i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g-s~d~~i~iwd~~~~~~~~~~~~  210 (293)
                      +++||.=...++..         +.|.|...      ....+.|+- +-+..+++.| +.+.+|+++|.+.++...+++-
T Consensus       806 iHlWDPFigr~Laq---------~~dapk~~------a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kV  869 (1034)
T KOG4190|consen  806 IHLWDPFIGRLLAQ---------MEDAPKEG------AGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSCEWTCELKV  869 (1034)
T ss_pred             ceeecccccchhHh---------hhcCcccC------CCceeEecc-cCcchheeeeccchhhheeeecccccceeeEEe
Confidence            99999644333321         22322210      011122221 1123344444 7899999999998876666653


Q ss_pred             c-----CCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEE
Q 022716          211 L-----EWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVH  248 (293)
Q Consensus       211 ~-----~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~  248 (293)
                      .     ..-+++++..|.|+++|.+-..|.|.+-|.++|+.+.
T Consensus       870 cna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vIN  912 (1034)
T KOG4190|consen  870 CNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVIN  912 (1034)
T ss_pred             ccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceec
Confidence            3     3458899999999999999999999999999998764

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.79  E-value=1.1e-07  Score=84.01  Aligned_cols=240  Identities=19%  Similarity=0.313  Sum_probs=149.1

Q ss_pred             cEEEEEECCCCC---eEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCC
Q 022716           22 KVHSVAWNCTGT---KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS   98 (293)
Q Consensus        22 ~v~~l~~s~~~~---~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~   98 (293)
                      .|-..+|+|...   ++++.+ ...-.+|++.... .......+.+|...|+.+.|+|+..+.+++++-|..+..||+++
T Consensus        69 ~vad~qws~h~a~~~wiVsts-~qkaiiwnlA~ss-~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rS  146 (1081)
T KOG0309|consen   69 QVADVQWSPHPAKPYWIVSTS-NQKAIIWNLAKSS-SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRS  146 (1081)
T ss_pred             hhcceecccCCCCceeEEecC-cchhhhhhhhcCC-ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccC
Confidence            466778887642   455444 4555689887533 33445668899999999999999999999999999999999988


Q ss_pred             Ceeee-e-eeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccc-eeeeecccceeeeeEEecCCCEEEEecCCCCEEE
Q 022716           99 GKCSQ-Q-AELSGENINITYKPDGTHIAVGNRDDELTILDVRKFK-PIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYC  175 (293)
Q Consensus        99 ~~~~~-~-~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  175 (293)
                      ..... . ...+.....+.|+.....+.+.+..+.+.+||++.+. ++...+-                    +-..+..
T Consensus       147 p~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~--------------------~vs~vn~  206 (1081)
T KOG0309|consen  147 PHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKG--------------------HVSSVNS  206 (1081)
T ss_pred             CCcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecc--------------------cceeeeh
Confidence            65322 2 2245556678887655566677778899999998653 2222211                    1122233


Q ss_pred             EEECC-CCCEEEEecCCCcEEEEeCCCCEEEEE-eeccCCCeeEEEEccCCCEEEEe--cCCCcE---------EEEEcC
Q 022716          176 IAIDP-MGRYFAVGSADSLVSLWDISEMLCVRT-FTKLEWPVRTISFSHTGDYIASA--SEDLFI---------DISNVH  242 (293)
Q Consensus       176 ~~~~~-~~~~l~~gs~d~~i~iwd~~~~~~~~~-~~~~~~~v~~l~~sp~~~~l~s~--s~d~~i---------~iw~~~  242 (293)
                      ++|.. ....+.+.+.|++|+.||..+....-. ......+|.--+|-|-|.-..+-  -.+..+         ..|+..
T Consensus       207 ~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~  286 (1081)
T KOG0309|consen  207 IDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVF  286 (1081)
T ss_pred             HHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccc
Confidence            44432 234678899999999999876532211 12234566666666655422221  112233         445555


Q ss_pred             CC-CEEEEEec-CCCcceeEECCCCC----------eEEEEEcCCCCCCCCcceEEEEeee
Q 022716          243 TG-RTVHQIPC-RAAMNSVEWNPKYN----------LLAYAGDDKNKYQADEGVFRIYGFE  291 (293)
Q Consensus       243 ~~-~~~~~~~~-~~~i~~~~~sp~~~----------~la~~~~d~~~~~~~~~~~~~~~~~  291 (293)
                      ++ +.++.+.. ...|...-|...+.          +|++-+.|.        .+|+|-+.
T Consensus       287 ~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~--------~lrlWpI~  339 (1081)
T KOG0309|consen  287 DLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQ--------TLRLWPID  339 (1081)
T ss_pred             cCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCC--------ceEeeecc
Confidence            44 45666643 33455555544333          688888774        56677654

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.78  E-value=9.9e-06  Score=68.50  Aligned_cols=219  Identities=12%  Similarity=0.111  Sum_probs=140.6

Q ss_pred             CccccEEEEEECCCCCeEEEEeCCC-cEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeC
Q 022716           18 GHKKKVHSVAWNCTGTKLASGSVDQ-TARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDA   96 (293)
Q Consensus        18 ~h~~~v~~l~~s~~~~~l~s~~~dg-~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~   96 (293)
                      +|...|.-..+..+++-++.|..|| .+-|+|.+..   ..  ......-+.|.++..+|++ ..++.+.....+-+.|+
T Consensus       357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~---e~--kr~e~~lg~I~av~vs~dG-K~~vvaNdr~el~vidi  430 (668)
T COG4946         357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGG---EV--KRIEKDLGNIEAVKVSPDG-KKVVVANDRFELWVIDI  430 (668)
T ss_pred             CCCCceEEEEEccCCcceEEeccCCceEEEEecCCc---eE--EEeeCCccceEEEEEcCCC-cEEEEEcCceEEEEEEe
Confidence            7888899999999999999999999 8999998742   21  2334556779999999874 56777777888899999


Q ss_pred             CCCeeeeeee-ecCceEEEEEcCCCCEEEEEeCCC----eEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCC
Q 022716           97 RSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDD----ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNA  171 (293)
Q Consensus        97 ~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~----~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  171 (293)
                      .++.....-+ -.+.++..+|+|++++++-+--+|    .|+++|+.+.+.........--.+-+|+|+++.+...+..+
T Consensus       431 dngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~Rs  510 (668)
T COG4946         431 DNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLSARS  510 (668)
T ss_pred             cCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEeccc
Confidence            9987544322 245567899999999999876555    68999998755433221111111223444444333222110


Q ss_pred             ------C------------------------------------------------EEEEEECCCCCEEEEecCCCcEEEE
Q 022716          172 ------G------------------------------------------------CYCIAIDPMGRYFAVGSADSLVSLW  197 (293)
Q Consensus       172 ------~------------------------------------------------~~~~~~~~~~~~l~~gs~d~~i~iw  197 (293)
                            .                                                +.=+-+.+....-+++-.+|.|.++
T Consensus       511 LdPs~Drv~fnf~f~~vskPylv~L~~g~~sP~~q~p~~~~~ea~e~dle~ie~r~eP~pVee~dY~sI~~lk~~killf  590 (668)
T COG4946         511 LDPSNDRVIFNFSFQRVSKPYLVVLGRGYYSPFNQPPDEANSEAGEVDLEGIEDRVEPFPVEEGDYRSIAGLKNGKILLF  590 (668)
T ss_pred             cCCCCCeeEEEEEEeeeccceEEEecCCCCChhhcCchhcCccccceehhhhcccccccccCccceeEeeecCCCeEEEE
Confidence                  0                                                0000111222334556666667776


Q ss_pred             eCC--------------CCEEE-E-----EeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCC
Q 022716          198 DIS--------------EMLCV-R-----TFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHT  243 (293)
Q Consensus       198 d~~--------------~~~~~-~-----~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~  243 (293)
                      ...              .+... .     ........+.++..|+|+..+.. -.|+.+++++++.
T Consensus       591 s~pi~Gefs~yy~gq~~kG~l~~ydletkk~~e~k~nvss~rlS~D~s~ilv-k~d~kl~~f~vek  655 (668)
T COG4946         591 SYPIHGEFSQYYWGQPEKGRLEKYDLETKKVEEYKDNVSSFRLSSDGSKILV-KLDGKLRLFDVEK  655 (668)
T ss_pred             EeeccchhhhhhcCCCccceEEEEecchhhHHHHhcccceEEEcCCCCEEEE-EeCCeEEEEeccc
Confidence            542              11110 0     11223456889999999999887 8999999999875

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.77  E-value=1.4e-05  Score=69.09  Aligned_cols=193  Identities=13%  Similarity=0.157  Sum_probs=110.2

Q ss_pred             CEEEEEeCCCeEEEEeCCCCeeeeeeeecCceEE------EEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccce--
Q 022716           80 DLIATASGDKTVRLWDARSGKCSQQAELSGENIN------ITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYE--  151 (293)
Q Consensus        80 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~--  151 (293)
                      +.++.+..++.+..+|.++++.+...........      ....  +..++.+..++.+..+|+++.+..-.......  
T Consensus       146 ~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g  223 (377)
T TIGR03300       146 GLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKG  223 (377)
T ss_pred             CEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeeccccCCC
Confidence            4566677899999999999887655444332211      1111  24677888889999999877654433221100  


Q ss_pred             ---ee---eeEEec--CCCEEEEecCCCCEEEEE-----------------ECCCCCEEEEecCCCcEEEEeCCCCEEEE
Q 022716          152 ---VN---EIAWNM--TGEMFFLTTGNAGCYCIA-----------------IDPMGRYFAVGSADSLVSLWDISEMLCVR  206 (293)
Q Consensus       152 ---~~---~v~~~~--~~~~~~~~~~~~~~~~~~-----------------~~~~~~~l~~gs~d~~i~iwd~~~~~~~~  206 (293)
                         +.   .+.-.|  .+..+++....+.+.++.                 ....+..+.+++.+|.+..+|..+++.+-
T Consensus       224 ~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~~~~p~~~~~~vyv~~~~G~l~~~d~~tG~~~W  303 (377)
T TIGR03300       224 RTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDASSYQGPAVDDNRLYVTDADGVVVALDRRSGSELW  303 (377)
T ss_pred             CCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccCCccCceEeCCEEEEECCCCeEEEEECCCCcEEE
Confidence               00   000000  112222222222222211                 11235677788899999999999887664


Q ss_pred             EeeccCCC-eeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEecCC-Ccce-eEECCCCCeEEEEEcCCCCC
Q 022716          207 TFTKLEWP-VRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRA-AMNS-VEWNPKYNLLAYAGDDKNKY  278 (293)
Q Consensus       207 ~~~~~~~~-v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~-~i~~-~~~sp~~~~la~~~~d~~~~  278 (293)
                      ........ ..+...  .+..|++++.+|.++++|..+|+.+..++... ++.. -...  ++.|..++.|++++
T Consensus       304 ~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~--~~~l~v~~~dG~l~  374 (377)
T TIGR03300       304 KNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVV--GDGLLVQTRDGDLY  374 (377)
T ss_pred             ccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEE--CCEEEEEeCCceEE
Confidence            44222221 111111  46789999999999999999999988776443 2222 2222  24577777776554

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.77  E-value=1.3e-05  Score=69.30  Aligned_cols=235  Identities=13%  Similarity=0.056  Sum_probs=132.6

Q ss_pred             CCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeeeecCc
Q 022716           31 TGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGE  110 (293)
Q Consensus        31 ~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~  110 (293)
                      .+..++.++.+|.+..+|..+..  ......+.+.  .......  . ...++.++.++.+..+|..+|+.+......+.
T Consensus        64 ~~~~v~v~~~~g~v~a~d~~tG~--~~W~~~~~~~--~~~~p~v--~-~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~  136 (377)
T TIGR03300        64 AGGKVYAADADGTVVALDAETGK--RLWRVDLDER--LSGGVGA--D-GGLVFVGTEKGEVIALDAEDGKELWRAKLSSE  136 (377)
T ss_pred             ECCEEEEECCCCeEEEEEccCCc--EeeeecCCCC--cccceEE--c-CCEEEEEcCCCEEEEEECCCCcEeeeeccCce
Confidence            36688889999999999876431  2222223221  1112222  2 34677788899999999999987665554443


Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceee-------eeEEecCCCEEEEecCCCCEEEEE------
Q 022716          111 NINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVN-------EIAWNMTGEMFFLTTGNAGCYCIA------  177 (293)
Q Consensus       111 ~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~~~~~~~~~~~~------  177 (293)
                      ..+.... .+..++.++.++.+..+|.++.+.+-+........       .+..   +..+++......+.++.      
T Consensus       137 ~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~---~~~v~~~~~~g~v~ald~~tG~~  212 (377)
T TIGR03300       137 VLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA---DGGVLVGFAGGKLVALDLQTGQP  212 (377)
T ss_pred             eecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE---CCEEEEECCCCEEEEEEccCCCE
Confidence            3221111 24567778889999999998766543322211100       0000   01111111111111110      


Q ss_pred             ----------------------ECC--CCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCC
Q 022716          178 ----------------------IDP--MGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASED  233 (293)
Q Consensus       178 ----------------------~~~--~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d  233 (293)
                                            -+|  .+..+.+++.+|.+..+|.++++.+-.... . ....  ....+..++.++.|
T Consensus       213 ~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~-~-~~~~--p~~~~~~vyv~~~~  288 (377)
T TIGR03300       213 LWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDA-S-SYQG--PAVDDNRLYVTDAD  288 (377)
T ss_pred             eeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeecc-C-CccC--ceEeCCEEEEECCC
Confidence                                  011  245677778899999999998876544431 1 1111  12356788888899


Q ss_pred             CcEEEEEcCCCCEEEEE-ecCCC-cceeEECCCCCeEEEEEcCCCCCCCCc
Q 022716          234 LFIDISNVHTGRTVHQI-PCRAA-MNSVEWNPKYNLLAYAGDDKNKYQADE  282 (293)
Q Consensus       234 ~~i~iw~~~~~~~~~~~-~~~~~-i~~~~~sp~~~~la~~~~d~~~~~~~~  282 (293)
                      +.+..+|..+|+.+-.. ..... ..+...  .++.+.+++.++.++.++.
T Consensus       289 G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~  337 (377)
T TIGR03300       289 GVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSR  337 (377)
T ss_pred             CeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEEC
Confidence            99999999999876544 22111 111111  3567788888877776554

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.67  E-value=2.3e-06  Score=70.64  Aligned_cols=82  Identities=15%  Similarity=0.241  Sum_probs=67.4

Q ss_pred             eeecCccccEEEEEECCCCC-eEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEE
Q 022716           14 REYTGHKKKVHSVAWNCTGT-KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (293)
Q Consensus        14 ~~~~~h~~~v~~l~~s~~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~   92 (293)
                      +.+.+|...|.+++|||..+ .|..++.+++|+|.|+++...    ...+..| ..+++.+|..+..++++.|-.+|.|.
T Consensus       187 q~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~----vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~Vl  261 (463)
T KOG1645|consen  187 QILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCV----VSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVL  261 (463)
T ss_pred             hcccccchhhhhhccCccccceeeeeccCceEEEEeccccee----eeheecc-CCceeeeeccCCcceeEEeccCceEE
Confidence            45667889999999999988 678999999999999986431    2233445 67999999988888999999999999


Q ss_pred             EEeCCCCe
Q 022716           93 LWDARSGK  100 (293)
Q Consensus        93 vwd~~~~~  100 (293)
                      +||++..+
T Consensus       262 vyD~R~~~  269 (463)
T KOG1645|consen  262 VYDMRQPE  269 (463)
T ss_pred             EEEccCCC
Confidence            99998654

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.61  E-value=1.8e-06  Score=74.05  Aligned_cols=139  Identities=22%  Similarity=0.368  Sum_probs=98.1

Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecC-
Q 022716          112 INITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSA-  190 (293)
Q Consensus       112 ~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~-  190 (293)
                      +-+.|+|.|.+|++-...| |.+|--.++...++..++                      .+.-+.|+|+.+||++=+. 
T Consensus       214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~Hp----------------------~Vq~idfSP~EkYLVT~s~~  270 (698)
T KOG2314|consen  214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFYHP----------------------GVQFIDFSPNEKYLVTYSPE  270 (698)
T ss_pred             eeEEecCCceEEEEEeccc-eeeecCccHHHHHhccCC----------------------CceeeecCCccceEEEecCC
Confidence            3589999999999987654 788877666655554332                      2344566676666666442 


Q ss_pred             ---------C-CcEEEEeCCCCEEEEEeeccCC--C-eeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEec-CCCc
Q 022716          191 ---------D-SLVSLWDISEMLCVRTFTKLEW--P-VRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPC-RAAM  256 (293)
Q Consensus       191 ---------d-~~i~iwd~~~~~~~~~~~~~~~--~-v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~-~~~i  256 (293)
                               + ..+.|||+++|...+.|.....  . ..-..||.|++|+|.... ..|.|++..+..++..... -..|
T Consensus       271 p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gI  349 (698)
T KOG2314|consen  271 PIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGI  349 (698)
T ss_pred             ccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccc
Confidence                     2 4699999999988887765332  2 234689999999998877 5688888766444332222 2468


Q ss_pred             ceeEECCCCCeEEEEEcC
Q 022716          257 NSVEWNPKYNLLAYAGDD  274 (293)
Q Consensus       257 ~~~~~sp~~~~la~~~~d  274 (293)
                      ...+|+|.++.||+-.-.
T Consensus       350 r~FswsP~~~llAYwtpe  367 (698)
T KOG2314|consen  350 RDFSWSPTSNLLAYWTPE  367 (698)
T ss_pred             cCcccCCCcceEEEEccc
Confidence            999999999999998754

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.59  E-value=4.6e-06  Score=74.37  Aligned_cols=224  Identities=18%  Similarity=0.190  Sum_probs=144.3

Q ss_pred             ceeecCccccEEEEEECCC------------CCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCC--C
Q 022716           13 SREYTGHKKKVHSVAWNCT------------GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK--H   78 (293)
Q Consensus        13 ~~~~~~h~~~v~~l~~s~~------------~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~--~   78 (293)
                      ++.+.-|++.|+.+.|.|.            .-.||++.-.|.|.+||+..    ......+..|.+++..++|-+.  .
T Consensus        48 iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~----~s~~~~l~~~~~~~qdl~W~~~rd~  123 (1062)
T KOG1912|consen   48 IQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVL----ASVINWLSHSNDSVQDLCWVPARDD  123 (1062)
T ss_pred             hhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehh----hhhhhhhcCCCcchhheeeeeccCc
Confidence            4556778999999999873            12567788889999999863    2233456678889999998663  2


Q ss_pred             -CCEEEEEeCCCeEEEEeCCCCeeeeeeeecCceE-EEEEcC-CCCEEEEEeCCCeEEEEEccccc----eeeeecccce
Q 022716           79 -ADLIATASGDKTVRLWDARSGKCSQQAELSGENI-NITYKP-DGTHIAVGNRDDELTILDVRKFK----PIHRRKFGYE  151 (293)
Q Consensus        79 -~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~-~~~~l~~~~~d~~i~l~d~~~~~----~~~~~~~~~~  151 (293)
                       .++|+....-..+.+|+..+|+..........+. ++.+.| |.+.+..-+..|.+.+.+.-...    +.++.....+
T Consensus       124 Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd  203 (1062)
T KOG1912|consen  124 SRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSD  203 (1062)
T ss_pred             chheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecC
Confidence             3677777888999999999998665544444444 477777 56677777777777666542211    1111111110


Q ss_pred             eeeeEEecCCCEEEEec-----CCCC------EEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEE
Q 022716          152 VNEIAWNMTGEMFFLTT-----GNAG------CYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISF  220 (293)
Q Consensus       152 ~~~v~~~~~~~~~~~~~-----~~~~------~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~  220 (293)
                      ..+.+   ..++...+.     ....      +-..+|+|.-+.++-..-...+.++|++-..++.......+.+.=+.+
T Consensus       204 ~Sdl~---~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~v  280 (1062)
T KOG1912|consen  204 HSDLA---HLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDV  280 (1062)
T ss_pred             ccchh---hhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEe
Confidence            00000   000000000     0000      123577887666666666778999999877777777666666666777


Q ss_pred             ccCC--CEEEEecCCCcEEEEEcCC
Q 022716          221 SHTG--DYIASASEDLFIDISNVHT  243 (293)
Q Consensus       221 sp~~--~~l~s~s~d~~i~iw~~~~  243 (293)
                      -|++  ..|.+...||.+.||-.+.
T Consensus       281 lP~~~rd~LfclH~nG~ltirvrk~  305 (1062)
T KOG1912|consen  281 LPDPRRDALFCLHSNGRLTIRVRKE  305 (1062)
T ss_pred             ccCCCcceEEEEecCCeEEEEEeec
Confidence            7776  4789999999999997654

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.55  E-value=2.8e-05  Score=72.73  Aligned_cols=217  Identities=16%  Similarity=0.256  Sum_probs=135.8

Q ss_pred             CCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeee
Q 022716           67 DSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRR  146 (293)
Q Consensus        67 ~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~  146 (293)
                      +.|.++.|..+. ..++-+..+|.|.+-|..+....-.-.....+.+++|+||+..++..+.+.++.+.+ .++.++...
T Consensus        69 ~~i~s~~fl~d~-~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT-~~f~~i~E~  146 (1265)
T KOG1920|consen   69 DEIVSVQFLADT-NSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMT-KDFEPIAEK  146 (1265)
T ss_pred             cceEEEEEeccc-ceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEe-ccccchhcc
Confidence            568888887664 445567788888888877765544445667788999999999999998888776643 333333332


Q ss_pred             ccc------ceeeeeEEecCCCEEEEec-------------------CCCCEEEEEECCCCCEEEE-----ecCCCcEEE
Q 022716          147 KFG------YEVNEIAWNMTGEMFFLTT-------------------GNAGCYCIAIDPMGRYFAV-----GSADSLVSL  196 (293)
Q Consensus       147 ~~~------~~~~~v~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~l~~-----gs~d~~i~i  196 (293)
                      ...      ...-.+.|......+.-..                   -+++-++|.|--||.++|+     ....+.|++
T Consensus       147 ~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV  226 (1265)
T KOG1920|consen  147 PLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRV  226 (1265)
T ss_pred             ccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEE
Confidence            221      1122234433222222111                   1223457899999999988     444589999


Q ss_pred             EeCCCCEEEEEee-ccCCCeeEEEEccCCCEEEEe---cCCCcEEEEEcCCC---CEEEEEecCC-CcceeEECCCCCeE
Q 022716          197 WDISEMLCVRTFT-KLEWPVRTISFSHTGDYIASA---SEDLFIDISNVHTG---RTVHQIPCRA-AMNSVEWNPKYNLL  268 (293)
Q Consensus       197 wd~~~~~~~~~~~-~~~~~v~~l~~sp~~~~l~s~---s~d~~i~iw~~~~~---~~~~~~~~~~-~i~~~~~sp~~~~l  268 (293)
                      ||.+ +. +.... ....--.+++|=|.|..+|+-   ..|..|.++--+.-   .-....+... ++..++|+.++..|
T Consensus       227 ~drE-g~-Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiL  304 (1265)
T KOG1920|consen  227 YDRE-GA-LNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDIL  304 (1265)
T ss_pred             eccc-ch-hhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCce
Confidence            9976 32 22222 223445678999999998875   34556777765432   1122233333 38999999999999


Q ss_pred             EEEEcCCCCCCCCcceEEEEeeec
Q 022716          269 AYAGDDKNKYQADEGVFRIYGFEN  292 (293)
Q Consensus       269 a~~~~d~~~~~~~~~~~~~~~~~~  292 (293)
                      |.--.++     .+..+++|-+-|
T Consensus       305 Av~~~~~-----e~~~v~lwt~~N  323 (1265)
T KOG1920|consen  305 AVVTSNL-----ENSLVQLWTTGN  323 (1265)
T ss_pred             eeeeccc-----ccceEEEEEecC
Confidence            9844432     123477776554

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.54  E-value=4.2e-07  Score=70.82  Aligned_cols=147  Identities=14%  Similarity=0.160  Sum_probs=89.7

Q ss_pred             CCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEec-----CCC
Q 022716          118 PDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGS-----ADS  192 (293)
Q Consensus       118 ~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs-----~d~  192 (293)
                      -.++.++++..|+.+.+++.++........   ++..             .+..   +..+-..++.+.++.     +-+
T Consensus        99 ~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i---~~~~-------------~~~a---s~~~~~~~~~i~s~~~g~~n~~d  159 (319)
T KOG4714|consen   99 MTDNRVCIGYADGSLAVFSTDKDLALMSRI---PSIH-------------SGSA---SRKICRHGNSILSGGCGNWNAQD  159 (319)
T ss_pred             ccCCceEecCCCceEEEEechHHHhhhhhc---cccc-------------cccc---ccceeecccEEecCCcceEeecc
Confidence            345678999999999999987632221110   0000             0000   011111233333221     123


Q ss_pred             cEEEEeCCCCEEEEEeeccCCCeeEEEEccCCC-EEEEecCCCcEEEEEcCCCCEEEE--EecCCCcceeEECCCC-CeE
Q 022716          193 LVSLWDISEMLCVRTFTKLEWPVRTISFSHTGD-YIASASEDLFIDISNVHTGRTVHQ--IPCRAAMNSVEWNPKY-NLL  268 (293)
Q Consensus       193 ~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~-~l~s~s~d~~i~iw~~~~~~~~~~--~~~~~~i~~~~~sp~~-~~l  268 (293)
                      ..++|++++...+..-+.....|.+++-+|..+ .+++|++||.+.+||.+....+-.  ..++.+|+.+.|||+. ..|
T Consensus       160 ~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~L  239 (319)
T KOG4714|consen  160 NFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHL  239 (319)
T ss_pred             ceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchhe
Confidence            455666655432222122234599999999765 567788999999999987643322  2356789999999965 789


Q ss_pred             EEEEcCCCCCCCCcc
Q 022716          269 AYAGDDKNKYQADEG  283 (293)
Q Consensus       269 a~~~~d~~~~~~~~~  283 (293)
                      .+++.|+.+|-|+..
T Consensus       240 ft~sedGslw~wdas  254 (319)
T KOG4714|consen  240 FTCSEDGSLWHWDAS  254 (319)
T ss_pred             eEecCCCcEEEEcCC
Confidence            999999999999886

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.53  E-value=7.2e-05  Score=67.73  Aligned_cols=245  Identities=12%  Similarity=0.159  Sum_probs=143.2

Q ss_pred             cEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCC-eeEEEEcCCCCCEEEEEeCCCe-----EEEEe
Q 022716           22 KVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADS-VDQLCWDPKHADLIATASGDKT-----VRLWD   95 (293)
Q Consensus        22 ~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~-i~~~~~~~~~~~~l~s~~~d~~-----i~vwd   95 (293)
                      .|+|+  ++.+..+|.|+.||.|-+.+-.     ......+.++... |..+ +.-.+..+|+|.++|+.     +++||
T Consensus        27 ~isc~--~s~~~~vvigt~~G~V~~Ln~s-----~~~~~~fqa~~~siv~~L-~~~~~~~~L~sv~Ed~~~np~llkiw~   98 (933)
T KOG2114|consen   27 AISCC--SSSTGSVVIGTADGRVVILNSS-----FQLIRGFQAYEQSIVQFL-YILNKQNFLFSVGEDEQGNPVLLKIWD   98 (933)
T ss_pred             ceeEE--cCCCceEEEeeccccEEEeccc-----ceeeehheecchhhhhHh-hcccCceEEEEEeecCCCCceEEEEec
Confidence            56665  6888899999999999887532     1111235556555 4443 34445578889888765     89999


Q ss_pred             CCCC------eee---eeeee-----cCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCC
Q 022716           96 ARSG------KCS---QQAEL-----SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTG  161 (293)
Q Consensus        96 ~~~~------~~~---~~~~~-----~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~  161 (293)
                      +...      .|.   ..+..     ..+..+++.+.+-+.+++|-.+|.|.++.-.   ..+.+..             
T Consensus        99 lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GD---i~RDrgs-------------  162 (933)
T KOG2114|consen   99 LEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGD---ILRDRGS-------------  162 (933)
T ss_pred             ccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCc---chhcccc-------------
Confidence            7432      233   11221     1223457788888899999999999887421   1111100             


Q ss_pred             CEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCE-EEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEE
Q 022716          162 EMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEML-CVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISN  240 (293)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~-~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~  240 (293)
                      +......+..+++.+++..++..++-...-..|.+|.+.... ....+..|..++++.+|++....+++++ +..+++|+
T Consensus       163 r~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~  241 (933)
T KOG2114|consen  163 RQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYD  241 (933)
T ss_pred             ceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEc
Confidence            011122345678888888777763333334568999987443 2344667778899999987655444433 45688998


Q ss_pred             cCCCCEEEEEecCCCcceeEECCCCCeEEEEEcCCCCC-----CCCcceEEEEeeec
Q 022716          241 VHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKY-----QADEGVFRIYGFEN  292 (293)
Q Consensus       241 ~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~d~~~~-----~~~~~~~~~~~~~~  292 (293)
                      ....+.-..+.. +.-.-+-|...|-+|++.-+.+...     .-....+++|+++|
T Consensus       242 sd~~~~cfaf~~-g~kk~~~~~~~g~~L~v~~~~~~~~~s~s~ss~~~i~~~~d~~n  297 (933)
T KOG2114|consen  242 SDGRGPCFAFEV-GEKKEMLVFSFGLLLCVTTDKGTENTSLSNSSSNRIFKAYDLRN  297 (933)
T ss_pred             CCCcceeeeecC-CCeEEEEEEecCEEEEEEccCCCCCcccCccchhheeehhhhcC
Confidence            864333333331 2222344545566666655443332     12234556666655

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.53  E-value=5.9e-07  Score=70.03  Aligned_cols=75  Identities=19%  Similarity=0.323  Sum_probs=61.1

Q ss_pred             ccEEEEEECCCC-CeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCC
Q 022716           21 KKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS   98 (293)
Q Consensus        21 ~~v~~l~~s~~~-~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~   98 (293)
                      ..|++++-.|.. +.+++|+.||.+-+||......+   ...+..|+++|+.+.|+|.+++.|+++++||.+-.||..+
T Consensus       180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p---~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMP---VSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             ccchhhhCCcccccEEEEecCCCeEEEEEcccccch---HHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            348999988865 45678889999999998753211   1236789999999999999999999999999999999754

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.50  E-value=0.00015  Score=58.28  Aligned_cols=216  Identities=18%  Similarity=0.138  Sum_probs=123.3

Q ss_pred             CCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeeeecCceEEEEEcCCC
Q 022716           41 DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDG  120 (293)
Q Consensus        41 dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  120 (293)
                      +|+|..||....  .......+..-......... +. ...++.++.++.+..||..+|+.+......+...... ..++
T Consensus         2 ~g~l~~~d~~tG--~~~W~~~~~~~~~~~~~~~~-~~-~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~   76 (238)
T PF13360_consen    2 DGTLSALDPRTG--KELWSYDLGPGIGGPVATAV-PD-GGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP-VVDG   76 (238)
T ss_dssp             TSEEEEEETTTT--EEEEEEECSSSCSSEEETEE-EE-TTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE-EEET
T ss_pred             CCEEEEEECCCC--CEEEEEECCCCCCCccceEE-Ee-CCEEEEEcCCCEEEEEECCCCCEEEEeecccccccee-eecc
Confidence            577788887532  22333333110111221111 12 3467777899999999999998877666544322211 2235


Q ss_pred             CEEEEEeCCCeEEEEEccccceeeee-cccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeC
Q 022716          121 THIAVGNRDDELTILDVRKFKPIHRR-KFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDI  199 (293)
Q Consensus       121 ~~l~~~~~d~~i~l~d~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~  199 (293)
                      ..+++++.++.+..+|+++.+..... ....+.                 ............+..++.+..++.|..+|+
T Consensus        77 ~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~  139 (238)
T PF13360_consen   77 GRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPP-----------------AGVRSSSSPAVDGDRLYVGTSSGKLVALDP  139 (238)
T ss_dssp             TEEEEEETTSEEEEEETTTSCEEEEEEE-SSCT-----------------CSTB--SEEEEETTEEEEEETCSEEEEEET
T ss_pred             cccccccceeeeEecccCCcceeeeeccccccc-----------------cccccccCceEecCEEEEEeccCcEEEEec
Confidence            56777778889999998887765431 111000                 000011111123777888888999999999


Q ss_pred             CCCEEEEEeeccCCC----------eeEEEEccCCCEEEEecCCCc-EEEEEcCCCCEEEEEecCCCcceeEECCCCCeE
Q 022716          200 SEMLCVRTFTKLEWP----------VRTISFSHTGDYIASASEDLF-IDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLL  268 (293)
Q Consensus       200 ~~~~~~~~~~~~~~~----------v~~l~~sp~~~~l~s~s~d~~-i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~l  268 (293)
                      +++..+-.......+          +..-....++ .+..++.++. +.+ |..+++.+-... ...+..+ ..+.+..+
T Consensus       140 ~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~-~~~~~~~-~~~~~~~l  215 (238)
T PF13360_consen  140 KTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLWSKP-ISGIYSL-PSVDGGTL  215 (238)
T ss_dssp             TTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEEEEC-SS-ECEC-EECCCTEE
T ss_pred             CCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEEEec-CCCccCC-ceeeCCEE
Confidence            999887666543322          1122222345 6666676774 666 999998664333 2222221 34677777


Q ss_pred             EEEEcCCCCCCCCc
Q 022716          269 AYAGDDKNKYQADE  282 (293)
Q Consensus       269 a~~~~d~~~~~~~~  282 (293)
                      ..++.++.++.+|-
T Consensus       216 ~~~~~~~~l~~~d~  229 (238)
T PF13360_consen  216 YVTSSDGRLYALDL  229 (238)
T ss_dssp             EEEETTTEEEEEET
T ss_pred             EEEeCCCEEEEEEC
Confidence            77777766665554

...

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.50  E-value=0.00036  Score=57.09  Aligned_cols=235  Identities=19%  Similarity=0.203  Sum_probs=119.1

Q ss_pred             cEEEEEECCC-CCeEEEEeCCCc-EEEeecCCCCCCcee----EEEeeCCcCCeeEEEEcCCCCCEEEEEeC-----CCe
Q 022716           22 KVHSVAWNCT-GTKLASGSVDQT-ARVWHIEPHGHGKVK----DIELRGHADSVDQLCWDPKHADLIATASG-----DKT   90 (293)
Q Consensus        22 ~v~~l~~s~~-~~~l~s~~~dg~-v~iw~~~~~~~~~~~----~~~~~~h~~~i~~~~~~~~~~~~l~s~~~-----d~~   90 (293)
                      ..+.++.+|. +..++.+-.-|+ ..+||..........    ...+.||-      .|++++ .+|++.-+     .|.
T Consensus         6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg------~fs~dG-~~LytTEnd~~~g~G~   78 (305)
T PF07433_consen    6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHG------VFSPDG-RLLYTTENDYETGRGV   78 (305)
T ss_pred             cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCE------EEcCCC-CEEEEeccccCCCcEE
Confidence            4567778884 445566666554 446777543211100    01233442      678875 56666533     578


Q ss_pred             EEEEeCC-CCeeeeeeeecC-ceEEEEEcCCCCEEEEEeC-------CC-----------eEEEEEccccceeeeecc--
Q 022716           91 VRLWDAR-SGKCSQQAELSG-ENINITYKPDGTHIAVGNR-------DD-----------ELTILDVRKFKPIHRRKF--  148 (293)
Q Consensus        91 i~vwd~~-~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~-------d~-----------~i~l~d~~~~~~~~~~~~--  148 (293)
                      |-|||.. ..+.+..+...+ .+-.+.+.|||+.|+++-.       .|           .+.+.|.++...+.+..+  
T Consensus        79 IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~  158 (305)
T PF07433_consen   79 IGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPP  158 (305)
T ss_pred             EEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCc
Confidence            9999998 334444443332 2346888999988777531       11           233334444443333222  


Q ss_pred             ---cceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCC
Q 022716          149 ---GYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGD  225 (293)
Q Consensus       149 ---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~  225 (293)
                         ...++.+.++.++...+....+....     ..-..++.-..++.+...+....    ........+-+|++++++.
T Consensus       159 ~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~-----~~~PLva~~~~g~~~~~~~~p~~----~~~~l~~Y~gSIa~~~~g~  229 (305)
T PF07433_consen  159 DLHQLSIRHLAVDGDGTVAFAMQYQGDPG-----DAPPLVALHRRGGALRLLPAPEE----QWRRLNGYIGSIAADRDGR  229 (305)
T ss_pred             cccccceeeEEecCCCcEEEEEecCCCCC-----ccCCeEEEEcCCCcceeccCChH----HHHhhCCceEEEEEeCCCC
Confidence               11234444443332222111110000     00112222222222333222111    1123456789999999998


Q ss_pred             EEEEec-CCCcEEEEEcCCCCEEEEEecCCCcceeEECCCCCeEEEEEcC
Q 022716          226 YIASAS-EDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDD  274 (293)
Q Consensus       226 ~l~s~s-~d~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~d  274 (293)
                      +++..| .-+.+.+||..+++.+....... +..++-.+++ ++++.|..
T Consensus       230 ~ia~tsPrGg~~~~~d~~tg~~~~~~~l~D-~cGva~~~~~-f~~ssG~G  277 (305)
T PF07433_consen  230 LIAVTSPRGGRVAVWDAATGRLLGSVPLPD-ACGVAPTDDG-FLVSSGQG  277 (305)
T ss_pred             EEEEECCCCCEEEEEECCCCCEeeccccCc-eeeeeecCCc-eEEeCCCc
Confidence            875555 77889999999999887654322 3345555544 56665543

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.49  E-value=4.8e-07  Score=73.22  Aligned_cols=134  Identities=16%  Similarity=0.120  Sum_probs=99.4

Q ss_pred             CccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCC
Q 022716           18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDAR   97 (293)
Q Consensus        18 ~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~   97 (293)
                      +-++.|-+++|.-.++.+..|...|.|-..|+.....+.......--|...|+++.........|++.+-+|+|++||++
T Consensus       250 ~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R  329 (425)
T KOG2695|consen  250 QSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLR  329 (425)
T ss_pred             ccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeeh
Confidence            34567888899888999999999999999999765433333334446888888887655345678888899999999998


Q ss_pred             CCee---eeeeeecCc---eEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccce
Q 022716           98 SGKC---SQQAELSGE---NINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYE  151 (293)
Q Consensus        98 ~~~~---~~~~~~~~~---~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~  151 (293)
                      .-++   +..++.+..   ..-+...+....+++++.|--.++|.++....+...+++..
T Consensus       330 ~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s  389 (425)
T KOG2695|consen  330 ATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYS  389 (425)
T ss_pred             hhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCCCc
Confidence            8777   444443321   12244566777888899999999999999888877766543

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.47  E-value=3.8e-05  Score=66.84  Aligned_cols=110  Identities=16%  Similarity=0.203  Sum_probs=75.1

Q ss_pred             eEEEEcCCCCCEEEEEe----CCCeE----EEEeCCCCee----eeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 022716           70 DQLCWDPKHADLIATAS----GDKTV----RLWDARSGKC----SQQAELSGENINITYKPDGTHIAVGNRDDELTILDV  137 (293)
Q Consensus        70 ~~~~~~~~~~~~l~s~~----~d~~i----~vwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~  137 (293)
                      .++.|+...+..+.|..    .+|.+    .+|++...+.    +..+...+.+.+++++|+.+.++.|..||.+.+||.
T Consensus       209 l~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~  288 (545)
T PF11768_consen  209 LDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDT  288 (545)
T ss_pred             EEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEc
Confidence            34555544444444432    23332    3456544432    223456788899999999999999999999999998


Q ss_pred             cccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCC
Q 022716          138 RKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISE  201 (293)
Q Consensus       138 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~  201 (293)
                      ........                      ...-.++.++|||+|..+++|+..|.+.+||+.-
T Consensus       289 ~~~~t~~~----------------------ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL  330 (545)
T PF11768_consen  289 TRGVTLLA----------------------KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL  330 (545)
T ss_pred             CCCeeeee----------------------eecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence            65432211                      1122346789999999999999999999999853

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.46  E-value=7.3e-05  Score=70.11  Aligned_cols=196  Identities=15%  Similarity=0.192  Sum_probs=122.6

Q ss_pred             ccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEee-CCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeC---
Q 022716           21 KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELR-GHADSVDQLCWDPKHADLIATASGDKTVRLWDA---   96 (293)
Q Consensus        21 ~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~-~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~---   96 (293)
                      ..|.++.|--++..++.+..+|.|.+=|.+...      .... .-...|.+++|+|+. ++++-.+..+++.+-.-   
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~------~eivg~vd~GI~aaswS~De-e~l~liT~~~tll~mT~~f~  141 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLE------LEIVGNVDNGISAASWSPDE-ELLALITGRQTLLFMTKDFE  141 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEcccccc------eeeeeeccCceEEEeecCCC-cEEEEEeCCcEEEEEecccc
Confidence            589999999999999999999999987665321      1222 235679999999974 67666777777765421   


Q ss_pred             -CCCeee-------------------eeee----------------------ecCceEEEEEcCCCCEEEEEe----CC-
Q 022716           97 -RSGKCS-------------------QQAE----------------------LSGENINITYKPDGTHIAVGN----RD-  129 (293)
Q Consensus        97 -~~~~~~-------------------~~~~----------------------~~~~~~~~~~~~~~~~l~~~~----~d-  129 (293)
                       -..+.+                   ..+.                      ...+.+++.|--||+++++..    .+ 
T Consensus       142 ~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~  221 (1265)
T KOG1920|consen  142 PIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGT  221 (1265)
T ss_pred             chhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCc
Confidence             111100                   0000                      112334588989999998843    23 


Q ss_pred             CeEEEEEccccceeeeec-ccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEe---cCCCcEEEEeCCCCEEE
Q 022716          130 DELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVG---SADSLVSLWDISEMLCV  205 (293)
Q Consensus       130 ~~i~l~d~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g---s~d~~i~iwd~~~~~~~  205 (293)
                      ..+++||-+. ....... -...-                     .+++|-|.|..+++-   ++|+.|.+|.- +|...
T Consensus       222 RkirV~drEg-~Lns~se~~~~l~---------------------~~LsWkPsgs~iA~iq~~~sd~~IvffEr-NGL~h  278 (1265)
T KOG1920|consen  222 RKIRVYDREG-ALNSTSEPVEGLQ---------------------HSLSWKPSGSLIAAIQCKTSDSDIVFFER-NGLRH  278 (1265)
T ss_pred             eeEEEecccc-hhhcccCcccccc---------------------cceeecCCCCeEeeeeecCCCCcEEEEec-CCccc
Confidence            7899999652 1111000 00111                     245666766666654   34557888873 44333


Q ss_pred             EEe----eccCCCeeEEEEccCCCEEEE---ecCCCcEEEEEcCCCCE
Q 022716          206 RTF----TKLEWPVRTISFSHTGDYIAS---ASEDLFIDISNVHTGRT  246 (293)
Q Consensus       206 ~~~----~~~~~~v~~l~~sp~~~~l~s---~s~d~~i~iw~~~~~~~  246 (293)
                      ..|    .....++..++|+.++..||.   ......|++|.+...+-
T Consensus       279 g~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhW  326 (1265)
T KOG1920|consen  279 GEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHW  326 (1265)
T ss_pred             cccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEE
Confidence            332    223345899999999999987   45555599999877653

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.44  E-value=0.0005  Score=55.66  Aligned_cols=184  Identities=18%  Similarity=0.215  Sum_probs=109.6

Q ss_pred             EEEEEEC-CCCCeEEEEeCCCcEEEeecCCCCCCceeEEEee--C-CcCCeeEEEEcCCCCCEEEEEeCC--------Ce
Q 022716           23 VHSVAWN-CTGTKLASGSVDQTARVWHIEPHGHGKVKDIELR--G-HADSVDQLCWDPKHADLIATASGD--------KT   90 (293)
Q Consensus        23 v~~l~~s-~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~--~-h~~~i~~~~~~~~~~~~l~s~~~d--------~~   90 (293)
                      ...+++. +++ .|+.+..++. .++|........  .....  . .....+.+++.|++ .+.++....        +.
T Consensus        42 ~~G~~~~~~~g-~l~v~~~~~~-~~~d~~~g~~~~--~~~~~~~~~~~~~~ND~~vd~~G-~ly~t~~~~~~~~~~~~g~  116 (246)
T PF08450_consen   42 PNGMAFDRPDG-RLYVADSGGI-AVVDPDTGKVTV--LADLPDGGVPFNRPNDVAVDPDG-NLYVTDSGGGGASGIDPGS  116 (246)
T ss_dssp             EEEEEEECTTS-EEEEEETTCE-EEEETTTTEEEE--EEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEE
T ss_pred             CceEEEEccCC-EEEEEEcCce-EEEecCCCcEEE--EeeccCCCcccCCCceEEEcCCC-CEEEEecCCCccccccccc
Confidence            6667777 565 5555555444 555776432111  11221  1 33557889999875 577766544        45


Q ss_pred             EEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEE-EeCCCeEEEEEccccce-eeeecccceeeeeEEecCCCEEEEec
Q 022716           91 VRLWDARSGKCSQQAELSGENINITYKPDGTHIAV-GNRDDELTILDVRKFKP-IHRRKFGYEVNEIAWNMTGEMFFLTT  168 (293)
Q Consensus        91 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~d~~i~l~d~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~  168 (293)
                      +..++.. ++.......-..+..++|+|+++.|++ -+..++|..+++..... +....       +..+.       ..
T Consensus       117 v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~-------~~~~~-------~~  181 (246)
T PF08450_consen  117 VYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRR-------VFIDF-------PG  181 (246)
T ss_dssp             EEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEE-------EEEE--------SS
T ss_pred             eEEECCC-CeEEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeee-------eEEEc-------CC
Confidence            6667766 554444444455678999999997764 45677888888753221 11000       00010       01


Q ss_pred             CCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEc-cCCCEE
Q 022716          169 GNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFS-HTGDYI  227 (293)
Q Consensus       169 ~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s-p~~~~l  227 (293)
                      .....--++++.+|++.++....+.|.++|.+ ++.+..+.-....+++++|. |+.+.|
T Consensus       182 ~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L  240 (246)
T PF08450_consen  182 GPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTL  240 (246)
T ss_dssp             SSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEE
T ss_pred             CCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEE
Confidence            11124468889999999988889999999987 77777666554589999994 665544

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.43  E-value=1.7e-06  Score=72.48  Aligned_cols=198  Identities=15%  Similarity=0.090  Sum_probs=131.0

Q ss_pred             CCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeee---e-ecCceEEEEEcCCCCEEEEEeC-CCeEEEEEcc
Q 022716           64 GHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQA---E-LSGENINITYKPDGTHIAVGNR-DDELTILDVR  138 (293)
Q Consensus        64 ~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~---~-~~~~~~~~~~~~~~~~l~~~~~-d~~i~l~d~~  138 (293)
                      .|.+.|+.+..  .-.+++.+++.||.++.|--..-.-....   . +-+.+.+++.+.++..+.++.. |..++++|+.
T Consensus         7 mhrd~i~hv~~--tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvE   84 (558)
T KOG0882|consen    7 MHRDVITHVFP--TKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVE   84 (558)
T ss_pred             cccceeeeEee--ehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEee
Confidence            47888887754  34679999999999999974331111111   1 1122345677788888888777 9999999998


Q ss_pred             ccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCC--EEEEEeeccCCCee
Q 022716          139 KFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM--LCVRTFTKLEWPVR  216 (293)
Q Consensus       139 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~--~~~~~~~~~~~~v~  216 (293)
                      +.......+.......+.|....        ...+..        .-++.-.++.+.++|-...  +....-.-|..||.
T Consensus        85 n~DminmiKL~~lPg~a~wv~sk--------Gd~~s~--------IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~  148 (558)
T KOG0882|consen   85 NFDMINMIKLVDLPGFAEWVTSK--------GDKISL--------IAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVK  148 (558)
T ss_pred             ccchhhhcccccCCCceEEecCC--------CCeeee--------EEeecccCCCcEEECCcCCcCccceecccccCceE
Confidence            87665555444444444443211        111111        1233345788999986533  23333445888999


Q ss_pred             EEEEccCCCEEEEecCCCcEEEEEcCC-CCEEE-----E----------EecCCCcceeEECCCCCeEEEEEcCCCCCC
Q 022716          217 TISFSHTGDYIASASEDLFIDISNVHT-GRTVH-----Q----------IPCRAAMNSVEWNPKYNLLAYAGDDKNKYQ  279 (293)
Q Consensus       217 ~l~~sp~~~~l~s~s~d~~i~iw~~~~-~~~~~-----~----------~~~~~~i~~~~~sp~~~~la~~~~d~~~~~  279 (293)
                      .+.++|.+.-+++....|.|.-|.... .+..+     .          ..++....+++|+|+++++++-+.|..++.
T Consensus       149 ~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~  227 (558)
T KOG0882|consen  149 KIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRG  227 (558)
T ss_pred             EEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEE
Confidence            999999999999999999999999873 21111     1          123456789999999999999998865544

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.43  E-value=3.4e-06  Score=76.43  Aligned_cols=153  Identities=17%  Similarity=0.271  Sum_probs=109.0

Q ss_pred             EEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeC---------CCeEEE
Q 022716           23 VHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASG---------DKTVRL   93 (293)
Q Consensus        23 v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~---------d~~i~v   93 (293)
                      |+-+.  .+++.|.+|...|+|-+-|..+..    ..-++.+|++.|.++...   +++|+|+|.         |..|+|
T Consensus       180 v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~----~iht~~aHs~siSDfDv~---GNlLitCG~S~R~~~l~~D~FvkV  250 (1118)
T KOG1275|consen  180 VTIMR--YNNRNLFCGDTRGTVFLRDPNSFE----TIHTFDAHSGSISDFDVQ---GNLLITCGYSMRRYNLAMDPFVKV  250 (1118)
T ss_pred             eEEEE--ecCcEEEeecccceEEeecCCcCc----eeeeeeccccceeeeecc---CCeEEEeecccccccccccchhhh
Confidence            44444  357889999999999998876432    233578999999988764   468888876         566899


Q ss_pred             EeCCCCeeeeeeeecCceEEEEEcCC-CCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCC
Q 022716           94 WDARSGKCSQQAELSGENINITYKPD-GTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAG  172 (293)
Q Consensus        94 wd~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  172 (293)
                      ||+++-+.+..+.++..+.-+.|.|. ...+++++..|.+.+.|..+..                +|......+......
T Consensus       251 YDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~ls----------------NP~~~~~~v~p~~s~  314 (1118)
T KOG1275|consen  251 YDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLS----------------NPPAGVKMVNPNGSG  314 (1118)
T ss_pred             hhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccC----------------CCccceeEEccCCCc
Confidence            99998777666665555555677774 3578888999999988843311                011111222233344


Q ss_pred             EEEEEECCCCCEEEEecCCCcEEEEeCC
Q 022716          173 CYCIAIDPMGRYFAVGSADSLVSLWDIS  200 (293)
Q Consensus       173 ~~~~~~~~~~~~l~~gs~d~~i~iwd~~  200 (293)
                      +...++++++..+|.|..+|.|.+|--.
T Consensus       315 i~~fDiSsn~~alafgd~~g~v~~wa~~  342 (1118)
T KOG1275|consen  315 ISAFDISSNGDALAFGDHEGHVNLWADR  342 (1118)
T ss_pred             ceeEEecCCCceEEEecccCcEeeecCC
Confidence            7788999999999999999999999743

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.42  E-value=0.00052  Score=56.15  Aligned_cols=198  Identities=14%  Similarity=0.216  Sum_probs=130.3

Q ss_pred             EEEEcCCCCCEEEEEeCCCe-EEEEeCCCCeeeeeeeecC-ceE--EEEEcCCCCEEEEEe-----CCCeEEEEEcc-cc
Q 022716           71 QLCWDPKHADLIATASGDKT-VRLWDARSGKCSQQAELSG-ENI--NITYKPDGTHIAVGN-----RDDELTILDVR-KF  140 (293)
Q Consensus        71 ~~~~~~~~~~~l~s~~~d~~-i~vwd~~~~~~~~~~~~~~-~~~--~~~~~~~~~~l~~~~-----~d~~i~l~d~~-~~  140 (293)
                      .++.+|.....++.+-.-|+ ..+||.++++....+.... ...  .-.|+|||++|++.-     ..|.|-+||.+ +.
T Consensus         9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~   88 (305)
T PF07433_consen    9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGY   88 (305)
T ss_pred             ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCc
Confidence            45667755556666655444 5789999988766543221 111  368999999999864     35689999998 55


Q ss_pred             ceeeeec-ccceeeeeEEecCCCEEEEecCCCCEEEEEECCCC--CEEEEecCCCcEEEEeCCCCEEEEEee----ccCC
Q 022716          141 KPIHRRK-FGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMG--RYFAVGSADSLVSLWDISEMLCVRTFT----KLEW  213 (293)
Q Consensus       141 ~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~gs~d~~i~iwd~~~~~~~~~~~----~~~~  213 (293)
                      ..+.+.. ++....++.|.++++.+.+..+.     |.-+|+.  ..|=..+++-++.+.|..+++.+.+..    -|..
T Consensus        89 ~ri~E~~s~GIGPHel~l~pDG~tLvVANGG-----I~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~l  163 (305)
T PF07433_consen   89 RRIGEFPSHGIGPHELLLMPDGETLVVANGG-----IETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQL  163 (305)
T ss_pred             EEEeEecCCCcChhhEEEcCCCCEEEEEcCC-----CccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccccc
Confidence            5555543 46667888899998777766654     2335553  335556777788888999998777632    2667


Q ss_pred             CeeEEEEccCCCEEEEecCCCc-------EEEEEcCCCCEEEEEe--------cCCCcceeEECCCCCeEEEEEcCC
Q 022716          214 PVRTISFSHTGDYIASASEDLF-------IDISNVHTGRTVHQIP--------CRAAMNSVEWNPKYNLLAYAGDDK  275 (293)
Q Consensus       214 ~v~~l~~sp~~~~l~s~s~d~~-------i~iw~~~~~~~~~~~~--------~~~~i~~~~~sp~~~~la~~~~d~  275 (293)
                      .++.+++.++|..++..=..+.       +.++.  .+..+..+.        .+.-+-+|++++++..+|.++=-+
T Consensus       164 SiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrG  238 (305)
T PF07433_consen  164 SIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRG  238 (305)
T ss_pred             ceeeEEecCCCcEEEEEecCCCCCccCCeEEEEc--CCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCC
Confidence            8999999999976655432221       23333  222222221        234578999999999998888654

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.42  E-value=9.9e-05  Score=58.20  Aligned_cols=171  Identities=13%  Similarity=0.114  Sum_probs=101.9

Q ss_pred             ecCccccEEEEEECCCCC-eEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCC--eeEEEEcCCCCCEEEEEeCCCeEE
Q 022716           16 YTGHKKKVHSVAWNCTGT-KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADS--VDQLCWDPKHADLIATASGDKTVR   92 (293)
Q Consensus        16 ~~~h~~~v~~l~~s~~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~--i~~~~~~~~~~~~l~s~~~d~~i~   92 (293)
                      ...|...|+-+.-..+.+ .+..++.|.++++.+++-...      ....|...  ++.++++++ +.++++.+....|.
T Consensus       111 cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~------~~~~h~~~~~~ns~~~snd-~~~~~~Vgds~~Vf  183 (344)
T KOG4532|consen  111 CDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSN------KFAVHNQNLTQNSLHYSND-PSWGSSVGDSRRVF  183 (344)
T ss_pred             ecccccchhhhhhhcccccceeeccCCcceeEEEEecCcc------cceeeccccceeeeEEcCC-CceEEEecCCCcce
Confidence            334444333333223332 467788899999988863211      12234433  678888886 56888888888999


Q ss_pred             EEeCCCCee--eeee--eecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEec
Q 022716           93 LWDARSGKC--SQQA--ELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTT  168 (293)
Q Consensus        93 vwd~~~~~~--~~~~--~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  168 (293)
                      .|.+.....  ....  ....+..+..|+.....++++..||++.+||+|........+-..               -..
T Consensus       184 ~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sst---------------rp~  248 (344)
T KOG4532|consen  184 RYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISST---------------RPH  248 (344)
T ss_pred             EEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhccc---------------CCC
Confidence            998865421  1211  223445578888888999999999999999998754322111000               001


Q ss_pred             CCCCEEEEEECCCCC--EEEEecCCCcEEEEeCCCCEEEEEe
Q 022716          169 GNAGCYCIAIDPMGR--YFAVGSADSLVSLWDISEMLCVRTF  208 (293)
Q Consensus       169 ~~~~~~~~~~~~~~~--~l~~gs~d~~i~iwd~~~~~~~~~~  208 (293)
                      +.+.+-.+.|+|.|.  +|...-.-+.+++-|++++...+.+
T Consensus       249 hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I  290 (344)
T KOG4532|consen  249 HNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVI  290 (344)
T ss_pred             CCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEE
Confidence            233344455554432  2333334467888999887655544

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.38  E-value=0.00066  Score=54.44  Aligned_cols=197  Identities=17%  Similarity=0.116  Sum_probs=114.4

Q ss_pred             CCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeee-eecC
Q 022716           31 TGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQA-ELSG  109 (293)
Q Consensus        31 ~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~-~~~~  109 (293)
                      ++..+++++.++.+..||....  .......+.+.....  ...  . ...++.+..++.+..+|..+++..... ....
T Consensus        35 ~~~~v~~~~~~~~l~~~d~~tG--~~~W~~~~~~~~~~~--~~~--~-~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~  107 (238)
T PF13360_consen   35 DGGRVYVASGDGNLYALDAKTG--KVLWRFDLPGPISGA--PVV--D-GGRVYVGTSDGSLYALDAKTGKVLWSIYLTSS  107 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTS--EEEEEEECSSCGGSG--EEE--E-TTEEEEEETTSEEEEEETTTSCEEEEEEE-SS
T ss_pred             eCCEEEEEcCCCEEEEEECCCC--CEEEEeeccccccce--eee--c-ccccccccceeeeEecccCCcceeeeeccccc
Confidence            5667888889999999998643  123333332211111  111  1 245666778889999999999877663 3221


Q ss_pred             c----eEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEE
Q 022716          110 E----NINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYF  185 (293)
Q Consensus       110 ~----~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  185 (293)
                      +    ........++..++++..++.+..+|+++++.+-..........       ..+.  . -.....-.+..++ .+
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~-------~~~~--~-~~~~~~~~~~~~~-~v  176 (238)
T PF13360_consen  108 PPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGS-------SPIS--S-FSDINGSPVISDG-RV  176 (238)
T ss_dssp             CTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS---------EE--E-ETTEEEEEECCTT-EE
T ss_pred             cccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCC-------ccee--e-ecccccceEEECC-EE
Confidence            1    12223333478889998899999999998876554432211000       0000  0 0001111122244 66


Q ss_pred             EEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEE
Q 022716          186 AVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVH  248 (293)
Q Consensus       186 ~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~  248 (293)
                      ..++.++.+.-+|+++++.+-+.  ....+..+ ..+++..|+.++.++.+..+|..+|+.+-
T Consensus       177 ~~~~~~g~~~~~d~~tg~~~w~~--~~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~~~W  236 (238)
T PF13360_consen  177 YVSSGDGRVVAVDLATGEKLWSK--PISGIYSL-PSVDGGTLYVTSSDGRLYALDLKTGKVVW  236 (238)
T ss_dssp             EEECCTSSEEEEETTTTEEEEEE--CSS-ECEC-EECCCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred             EEEcCCCeEEEEECCCCCEEEEe--cCCCccCC-ceeeCCEEEEEeCCCEEEEEECCCCCEEe
Confidence            66666775333499999855322  22233332 34677888888899999999999998764

...

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.32  E-value=0.0016  Score=56.18  Aligned_cols=247  Identities=11%  Similarity=0.101  Sum_probs=131.2

Q ss_pred             cEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCC-----------------------cee----------------EEEe
Q 022716           22 KVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHG-----------------------KVK----------------DIEL   62 (293)
Q Consensus        22 ~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~-----------------------~~~----------------~~~~   62 (293)
                      .|+.+.|.++...|+.|...|.|-+|....+...                       .+.                ..-+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            5889999999999999999999999865322100                       000                0112


Q ss_pred             eCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeeeecC---------ceEEEEEc-----CCC---CEEEE
Q 022716           63 RGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSG---------ENINITYK-----PDG---THIAV  125 (293)
Q Consensus        63 ~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~---------~~~~~~~~-----~~~---~~l~~  125 (293)
                      ....++|++++.+.  -.+++.|.++|.+.|.|++....+.......         .+.++.|.     .|+   -.+++
T Consensus        83 ~~~~g~vtal~~S~--iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v  160 (395)
T PF08596_consen   83 DAKQGPVTALKNSD--IGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV  160 (395)
T ss_dssp             ---S-SEEEEEE-B--TSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred             eccCCcEeEEecCC--CcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence            23467899998863  4588889999999999998877666543332         24455554     333   36889


Q ss_pred             EeCCCeEEEEEccc-cceeeeecccceeeeeEEecCCCEEE--EecCCCCEEEEEEC-------C--CCCEEEEecCCCc
Q 022716          126 GNRDDELTILDVRK-FKPIHRRKFGYEVNEIAWNMTGEMFF--LTTGNAGCYCIAID-------P--MGRYFAVGSADSL  193 (293)
Q Consensus       126 ~~~d~~i~l~d~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~-------~--~~~~l~~gs~d~~  193 (293)
                      |+..|.+.+|.+.- ..-.....    .........+....  ....+....+++--       +  .-.-+++...+..
T Consensus       161 GTn~G~v~~fkIlp~~~g~f~v~----~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~  236 (395)
T PF08596_consen  161 GTNSGNVLTFKILPSSNGRFSVQ----FAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESD  236 (395)
T ss_dssp             EETTSEEEEEEEEE-GGG-EEEE----EEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSE
T ss_pred             EeCCCCEEEEEEecCCCCceEEE----EeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccc
Confidence            99999999987641 11101000    00000000111000  00011111111100       0  1122344445778


Q ss_pred             EEEEeCCCCEEEEEeeccCCCeeEEEEc-----cCCCEEEEecCCCcEEEEEcCCCCEEEEEecCC-----CcceeEECC
Q 022716          194 VSLWDISEMLCVRTFTKLEWPVRTISFS-----HTGDYIASASEDLFIDISNVHTGRTVHQIPCRA-----AMNSVEWNP  263 (293)
Q Consensus       194 i~iwd~~~~~~~~~~~~~~~~v~~l~~s-----p~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~-----~i~~~~~sp  263 (293)
                      ++++...+.+..++..........+.+-     ..+..|++-..+|.|+++.+..-+.+..+....     .+....+++
T Consensus       237 irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~  316 (395)
T PF08596_consen  237 IRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISR  316 (395)
T ss_dssp             EEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-T
T ss_pred             eEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECC
Confidence            9999988776655443332334445553     356678888999999999999988887766532     356788899


Q ss_pred             CCCeEEEEEcC
Q 022716          264 KYNLLAYAGDD  274 (293)
Q Consensus       264 ~~~~la~~~~d  274 (293)
                      +|..+.-.|..
T Consensus       317 ~Gdi~~~~gps  327 (395)
T PF08596_consen  317 NGDIFYWTGPS  327 (395)
T ss_dssp             TS-EEEE-SSS
T ss_pred             CCCEEEEeCcc
Confidence            99988777653

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.32  E-value=0.00016  Score=62.85  Aligned_cols=184  Identities=18%  Similarity=0.240  Sum_probs=109.4

Q ss_pred             CeeEEEEcCCCCCEEEEEeCC---CeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEe-CCCe--EEEEEccccc
Q 022716           68 SVDQLCWDPKHADLIATASGD---KTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGN-RDDE--LTILDVRKFK  141 (293)
Q Consensus        68 ~i~~~~~~~~~~~~l~s~~~d---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~--i~l~d~~~~~  141 (293)
                      .+..-.|+|++..+.+..-..   ..+.++|+.+++........+....-+|+|||+.|+... .|+.  |.+.|+....
T Consensus       194 ~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~  273 (425)
T COG0823         194 LILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN  273 (425)
T ss_pred             ceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCc
Confidence            344556777765544333222   358899999988777767777777789999999887665 4554  5556766655


Q ss_pred             eeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecC-CCc--EEEEeCCCCEEEEEeeccCCCeeEE
Q 022716          142 PIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSA-DSL--VSLWDISEMLCVRTFTKLEWPVRTI  218 (293)
Q Consensus       142 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~-d~~--i~iwd~~~~~~~~~~~~~~~~v~~l  218 (293)
                      ..+ ....                    .+.-..=.++|+|+.++-.++ .|.  |.+++.+.... ..++.....-..-
T Consensus       274 ~~~-Lt~~--------------------~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p  331 (425)
T COG0823         274 LPR-LTNG--------------------FGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNP  331 (425)
T ss_pred             cee-cccC--------------------CccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCc
Confidence            222 1111                    111113356788877655543 444  55556655433 2222222211256


Q ss_pred             EEccCCCEEEEecC-CCc--EEEEEcCCCCEEEEEecCCCcceeEECCCCCeEEEEEc
Q 022716          219 SFSHTGDYIASASE-DLF--IDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGD  273 (293)
Q Consensus       219 ~~sp~~~~l~s~s~-d~~--i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~  273 (293)
                      .++|||++++..+. +|.  |.+.+..++..++.+........-.|.|++..+.+.+.
T Consensus       332 ~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s~  389 (425)
T COG0823         332 VWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFSSG  389 (425)
T ss_pred             cCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEecc
Confidence            68999999877764 344  67777777665555544444456677888776666554

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.31  E-value=6.1e-05  Score=67.71  Aligned_cols=185  Identities=14%  Similarity=0.154  Sum_probs=124.2

Q ss_pred             ccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCC
Q 022716           19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS   98 (293)
Q Consensus        19 h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~   98 (293)
                      ....++|++++  +++|+-|.-+|.|++.+...+.     . .-..|+..      . ..+.+++||+.||.|.|-.+.+
T Consensus        38 ~~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~-----~-~~~~~s~~------~-~~Gey~asCS~DGkv~I~sl~~  102 (846)
T KOG2066|consen   38 QNDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP-----K-TNFDHSSS------I-LEGEYVASCSDDGKVVIGSLFT  102 (846)
T ss_pred             hhhHHHHHHhh--cceeeeccccceEEEEecCCcc-----c-cccccccc------c-cCCceEEEecCCCcEEEeeccC
Confidence            34677788775  5789999999999999876321     1 11234332      2 2367999999999999998888


Q ss_pred             CeeeeeeeecCceEEEEEcCC-----CCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCE
Q 022716           99 GKCSQQAELSGENINITYKPD-----GTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGC  173 (293)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  173 (293)
                      .+......++-+..+++++|+     .+.+++|+.-| +.++.-+-..                  ....+......+++
T Consensus       103 ~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlg------------------nk~~v~l~~~eG~I  163 (846)
T KOG2066|consen  103 DDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLG------------------NKDSVVLSEGEGPI  163 (846)
T ss_pred             CccceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhc------------------CccceeeecCccce
Confidence            776666777788889999987     56899998877 6666532111                  11122344556777


Q ss_pred             EEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCC------eeEEEEccCCCEEEEecCCCcEEEEEcC
Q 022716          174 YCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWP------VRTISFSHTGDYIASASEDLFIDISNVH  242 (293)
Q Consensus       174 ~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~------v~~l~~sp~~~~l~s~s~d~~i~iw~~~  242 (293)
                      .++.|  .|+++|-++.+| |++||+.....+..+......      ...+.|.++.+. +.|=.| +|+|..++
T Consensus       164 ~~i~W--~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~L-VIGW~d-~v~i~~I~  233 (846)
T KOG2066|consen  164 HSIKW--RGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRL-VIGWGD-SVKICSIK  233 (846)
T ss_pred             EEEEe--cCcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeE-EEecCC-eEEEEEEe
Confidence            77777  478889888777 899999887776655433322      344677666554 443222 35555554

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.30  E-value=8.8e-05  Score=66.15  Aligned_cols=171  Identities=13%  Similarity=0.067  Sum_probs=102.7

Q ss_pred             CCCeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCC----eEEEEEccccceeeeecccceeeeeEEecCCC
Q 022716           87 GDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDD----ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGE  162 (293)
Q Consensus        87 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~----~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~  162 (293)
                      ..+.+.+.|..+-+........+....++++|+|+++++.+.+.    ++...+.....           ..+.++..+ 
T Consensus       213 y~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d-----------~~vvfni~~-  280 (635)
T PRK02888        213 YRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERD-----------WVVVFNIAR-  280 (635)
T ss_pred             eeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCc-----------eEEEEchHH-
Confidence            35667777777666666666677777889999999998886322    22222221100           111111111 


Q ss_pred             EEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCC----C-EEEEEeeccCCCeeEEEEccCCCEEEEec-CCCcE
Q 022716          163 MFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISE----M-LCVRTFTKLEWPVRTISFSHTGDYIASAS-EDLFI  236 (293)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~----~-~~~~~~~~~~~~v~~l~~sp~~~~l~s~s-~d~~i  236 (293)
                                  .-++.++|++...+  ++.|.+.|.++    + ..+..+ ........+.++|||++++.++ .+.++
T Consensus       281 ------------iea~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yI-PVGKsPHGV~vSPDGkylyVanklS~tV  345 (635)
T PRK02888        281 ------------IEEAVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYV-PVPKNPHGVNTSPDGKYFIANGKLSPTV  345 (635)
T ss_pred             ------------HHHhhhCCCEEEEC--CCEEEEEECCccccCCcceEEEE-ECCCCccceEECCCCCEEEEeCCCCCcE
Confidence                        01234567766653  67899999987    3 333333 3455778999999999986655 68999


Q ss_pred             EEEEcCCCCE------------EEEEecCCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeeec
Q 022716          237 DISNVHTGRT------------VHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN  292 (293)
Q Consensus       237 ~iw~~~~~~~------------~~~~~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~~  292 (293)
                      .+.|+.+.+.            +.+......-.-.+|.++|+.+.+--.|.        .+-.|++++
T Consensus       346 SVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~ds--------qv~kwn~~~  405 (635)
T PRK02888        346 TVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDS--------QIVKWNIEA  405 (635)
T ss_pred             EEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecc--------eeEEEehHH
Confidence            9999988553            22222222334578888887544444443        444466654

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.29  E-value=1.3e-05  Score=71.20  Aligned_cols=221  Identities=13%  Similarity=0.143  Sum_probs=137.6

Q ss_pred             cccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcC--CeeEEEEcCCC--CCEEEEEeCCCeEEEEe
Q 022716           20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHAD--SVDQLCWDPKH--ADLIATASGDKTVRLWD   95 (293)
Q Consensus        20 ~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~--~i~~~~~~~~~--~~~l~s~~~d~~i~vwd   95 (293)
                      ..++..+..+|.|+-+|.|+.-|- .+-|++....+..    ...|..  .|..+.|+|..  ...+++.+.. ...+|+
T Consensus        24 ~~~~~a~si~p~grdi~lAsr~gl-~i~dld~p~~ppr----~l~h~tpw~vad~qws~h~a~~~wiVsts~q-kaiiwn   97 (1081)
T KOG0309|consen   24 DGGFNAVSINPSGRDIVLASRQGL-YIIDLDDPFTPPR----WLHHITPWQVADVQWSPHPAKPYWIVSTSNQ-KAIIWN   97 (1081)
T ss_pred             cCcccceeeccccchhhhhhhcCe-EEEeccCCCCCce----eeeccCcchhcceecccCCCCceeEEecCcc-hhhhhh
Confidence            357788899999999999988775 4446664322221    122332  25566676532  2345544443 445888


Q ss_pred             CCCC--eeeeeee-ec-CceEEEEEcCCC-CEEEEEeCCCeEEEEEccccce-eeeecccceeeeeEEecCCCEEEEecC
Q 022716           96 ARSG--KCSQQAE-LS-GENINITYKPDG-THIAVGNRDDELTILDVRKFKP-IHRRKFGYEVNEIAWNMTGEMFFLTTG  169 (293)
Q Consensus        96 ~~~~--~~~~~~~-~~-~~~~~~~~~~~~-~~l~~~~~d~~i~l~d~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~  169 (293)
                      +...  +.+..+. .+ ..++.+-|.|.. ..+++++-|-.++.||+++... ....                    ..-
T Consensus        98 lA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~--------------------~~w  157 (1081)
T KOG0309|consen   98 LAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYST--------------------SSW  157 (1081)
T ss_pred             hhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeee--------------------ecc
Confidence            7433  2222221 12 234567787654 4788899999999999987431 1110                    001


Q ss_pred             CCCEEEEEECCCCCEEEEecCCCcEEEEeCCCC-EEEEEeeccCCCeeEEEEccC-CCEEEEecCCCcEEEEEcCCCCE-
Q 022716          170 NAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM-LCVRTFTKLEWPVRTISFSHT-GDYIASASEDLFIDISNVHTGRT-  246 (293)
Q Consensus       170 ~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~-~~~~~~~~~~~~v~~l~~sp~-~~~l~s~s~d~~i~iw~~~~~~~-  246 (293)
                      ......++++.....+.+.+..+.|.+||.+.+ .++..+++|...|+.++|+.. ...+.+++.|++|++||-..... 
T Consensus       158 ~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e  237 (1081)
T KOG0309|consen  158 RSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTE  237 (1081)
T ss_pred             cccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccc
Confidence            112234555555555666667778999999865 566778888889999999754 45688999999999999875432 


Q ss_pred             -EEEEecCCCcceeEECCCCC
Q 022716          247 -VHQIPCRAAMNSVEWNPKYN  266 (293)
Q Consensus       247 -~~~~~~~~~i~~~~~sp~~~  266 (293)
                       .+..+..-+|..-.+-|-|.
T Consensus       238 ~~~~vtt~~piw~~r~~Pfg~  258 (1081)
T KOG0309|consen  238 SKRTVTTNFPIWRGRYLPFGE  258 (1081)
T ss_pred             cceeccccCcceeccccccCc
Confidence             34444555666666666553

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.28  E-value=1.5e-05  Score=69.30  Aligned_cols=74  Identities=18%  Similarity=0.243  Sum_probs=64.0

Q ss_pred             CCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCC
Q 022716          169 GNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTG  244 (293)
Q Consensus       169 ~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~  244 (293)
                      ....+.|.+++|+...++.|..||+|.+||...+.  ..+......++.++|+|+|..++.|+..|.+.+||....
T Consensus       258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~--t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGV--TLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             cCCcceEEecCcccceEEEEecCCeEEEEEcCCCe--eeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence            34567889999999999999999999999987763  334456678899999999999999999999999998754

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.27  E-value=0.00013  Score=65.59  Aligned_cols=168  Identities=18%  Similarity=0.253  Sum_probs=111.8

Q ss_pred             cCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeee
Q 022716           66 ADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR  145 (293)
Q Consensus        66 ~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~  145 (293)
                      .+.+++.+++   ...|+-|.-+|.|++.+.+...  .....+...     .-+|.++++|+.||++.+..+-+......
T Consensus        39 ~D~is~~av~---~~~~~~GtH~g~v~~~~~~~~~--~~~~~~s~~-----~~~Gey~asCS~DGkv~I~sl~~~~~~~~  108 (846)
T KOG2066|consen   39 NDAISCCAVH---DKFFALGTHRGAVYLTTCQGNP--KTNFDHSSS-----ILEGEYVASCSDDGKVVIGSLFTDDEITQ  108 (846)
T ss_pred             hhHHHHHHhh---cceeeeccccceEEEEecCCcc--ccccccccc-----ccCCceEEEecCCCcEEEeeccCCcccee
Confidence            3456666665   3578889999999999865432  111111111     56799999999999999988766554443


Q ss_pred             ecccceeeeeEEecCCCEEEEecCCCCEEEEEECCC-----CCEEEEecCCCcEEEEeCC---CCEEEEEeeccCCCeeE
Q 022716          146 RKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPM-----GRYFAVGSADSLVSLWDIS---EMLCVRTFTKLEWPVRT  217 (293)
Q Consensus       146 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~gs~d~~i~iwd~~---~~~~~~~~~~~~~~v~~  217 (293)
                      ..+..                     ++.+++++|+     .+.+++|+..| +.++.-+   +...+ .+..-+++|.+
T Consensus       109 ~df~r---------------------piksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~eG~I~~  165 (846)
T KOG2066|consen  109 YDFKR---------------------PIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSEGEGPIHS  165 (846)
T ss_pred             EecCC---------------------cceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeecCccceEE
Confidence            33332                     3456777887     56789999998 8777532   11111 34556789999


Q ss_pred             EEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEec-CCCc------ceeEECCCCCeEE
Q 022716          218 ISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPC-RAAM------NSVEWNPKYNLLA  269 (293)
Q Consensus       218 l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~-~~~i------~~~~~sp~~~~la  269 (293)
                      +.|  .|.++|=++++| |+++|+.+++.+..++. +..+      ..+.|.++...+.
T Consensus       166 i~W--~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVI  221 (846)
T KOG2066|consen  166 IKW--RGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVI  221 (846)
T ss_pred             EEe--cCcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEE
Confidence            998  577888888777 69999999888876643 2223      2478877654443

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.27  E-value=0.0022  Score=55.47  Aligned_cols=220  Identities=20%  Similarity=0.202  Sum_probs=138.5

Q ss_pred             EEEEEECCCCC-eEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEe--CCCeEEEEeCCCC
Q 022716           23 VHSVAWNCTGT-KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATAS--GDKTVRLWDARSG   99 (293)
Q Consensus        23 v~~l~~s~~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~--~d~~i~vwd~~~~   99 (293)
                      -..++++++++ ..++...++.|.+.|.....  ... ....+.  .-..+.+.|++..+.++-.  .++.+.+.|..+.
T Consensus        76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~--~~~-~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~  150 (381)
T COG3391          76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNT--VLG-SIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATN  150 (381)
T ss_pred             ccceeeCCCCCeEEEecCCCCeEEEEcCcccc--eee-Eeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCC
Confidence            34678888887 45666667999998855322  111 112233  3456788888766666655  4788999998888


Q ss_pred             eeeeeeeecCceEEEEEcCCCCEEEEEe-CCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEE
Q 022716          100 KCSQQAELSGENINITYKPDGTHIAVGN-RDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAI  178 (293)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  178 (293)
                      ...........+..+++.|+|+.+.+.. .++++.+.|.......+ ......+               .......-+++
T Consensus       151 ~~~~~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~---------------~~~~~P~~i~v  214 (381)
T COG3391         151 KVTATIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLV---------------GVGTGPAGIAV  214 (381)
T ss_pred             eEEEEEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-ccccccc---------------ccCCCCceEEE
Confidence            7776654444568899999999776665 68899999976654332 1000000               00011224667


Q ss_pred             CCCCCEEEEec-C--CCcEEEEeCCCCEEEEEeeccCC-CeeEEEEccCCCEEEEecC-CCcEEEEEcCCCCEEEEEecC
Q 022716          179 DPMGRYFAVGS-A--DSLVSLWDISEMLCVRTFTKLEW-PVRTISFSHTGDYIASASE-DLFIDISNVHTGRTVHQIPCR  253 (293)
Q Consensus       179 ~~~~~~l~~gs-~--d~~i~iwd~~~~~~~~~~~~~~~-~v~~l~~sp~~~~l~s~s~-d~~i~iw~~~~~~~~~~~~~~  253 (293)
                      +|++..+-+.. .  ++.+...|..++........-.. ....+.++|+|.++..... .+.+.+-|..+..........
T Consensus       215 ~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~  294 (381)
T COG3391         215 DPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTG  294 (381)
T ss_pred             CCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeeccc
Confidence            78877443332 2  36899999988766554222222 4667899999999988754 488999998887766654322


Q ss_pred             C----CcceeEECC
Q 022716          254 A----AMNSVEWNP  263 (293)
Q Consensus       254 ~----~i~~~~~sp  263 (293)
                      .    .+..+++.+
T Consensus       295 ~~~~~~~~~~~~~~  308 (381)
T COG3391         295 NEALGEPVSIAISP  308 (381)
T ss_pred             ccccccceecccee
Confidence            2    244555544

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.23  E-value=0.0011  Score=53.34  Aligned_cols=194  Identities=19%  Similarity=0.323  Sum_probs=99.7

Q ss_pred             EeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeeeecC--ceEEEEEcCCCCEEEEEeCCCeEEEEEcc
Q 022716           61 ELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSG--ENINITYKPDGTHIAVGNRDDELTILDVR  138 (293)
Q Consensus        61 ~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~d~~i~l~d~~  138 (293)
                      .+++-...+..++|+|+...+++.....+.|.-.+. +|+.+..+.+.+  -.-.+++.-++.++++--.++++.++++.
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~   94 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID   94 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence            455656679999999986667777777888887786 467777666543  45678888888777776668999998874


Q ss_pred             ccce-e-----eeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCC---CEEEE--E
Q 022716          139 KFKP-I-----HRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISE---MLCVR--T  207 (293)
Q Consensus       139 ~~~~-~-----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~---~~~~~--~  207 (293)
                      .... +     .....+..               ..++...--++++|.++.|.++-...-..||.++.   ...+.  .
T Consensus        95 ~~~~~~~~~~~~~~~l~~~---------------~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~  159 (248)
T PF06977_consen   95 DDTTSLDRADVQKISLGFP---------------NKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSD  159 (248)
T ss_dssp             ---TT--EEEEEEEE---S------------------SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE
T ss_pred             ccccccchhhceEEecccc---------------cCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecc
Confidence            3211 1     11111100               01122233345555444444444333344443321   11111  1


Q ss_pred             e------eccCCCeeEEEEccC-CCEEEEecCCCcEEEEEcCCCCEEEEEecCCC-------c---ceeEECCCCCeEEE
Q 022716          208 F------TKLEWPVRTISFSHT-GDYIASASEDLFIDISNVHTGRTVHQIPCRAA-------M---NSVEWNPKYNLLAY  270 (293)
Q Consensus       208 ~------~~~~~~v~~l~~sp~-~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~-------i---~~~~~sp~~~~la~  270 (293)
                      .      ......+.+++|+|. +++++.......|-..| .+|+.+..+.....       +   -.|+|.|+|+++++
T Consensus       160 ~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv  238 (248)
T PF06977_consen  160 DQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV  238 (248)
T ss_dssp             -HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE
T ss_pred             ccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE
Confidence            1      112346889999987 45667777888899999 67887776665442       2   24788888877666


Q ss_pred             E
Q 022716          271 A  271 (293)
Q Consensus       271 ~  271 (293)
                      +
T Consensus       239 s  239 (248)
T PF06977_consen  239 S  239 (248)
T ss_dssp             E
T ss_pred             c
Confidence            5

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.22  E-value=3.3e-05  Score=70.28  Aligned_cols=176  Identities=12%  Similarity=0.154  Sum_probs=118.7

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCeeeeeeeecCc-eEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEE
Q 022716           79 ADLIATASGDKTVRLWDARSGKCSQQAELSGE-NINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAW  157 (293)
Q Consensus        79 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~  157 (293)
                      ++.++-|+-...+..+|+++.+..+..+.... +.-|  ..+++.+.+|...|+|.+-|+++.+..+...          
T Consensus       147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~im--R~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~----------  214 (1118)
T KOG1275|consen  147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIM--RYNNRNLFCGDTRGTVFLRDPNSFETIHTFD----------  214 (1118)
T ss_pred             CcceeecchhhheeeeecccceeeeeeeccCCceEEE--EecCcEEEeecccceEEeecCCcCceeeeee----------
Confidence            34555666666777789988877666665553 3333  3467899999999999999999988777643          


Q ss_pred             ecCCCEEEEecCCCCEEEEEECCCCCEEEEecC---------CCcEEEEeCCCCEEEEEeeccCCCeeEEEEccC-CCEE
Q 022716          158 NMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSA---------DSLVSLWDISEMLCVRTFTKLEWPVRTISFSHT-GDYI  227 (293)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~---------d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~-~~~l  227 (293)
                                ++.+.+  .+|+-.|+.|++++-         |.-|++||++..+.+.-+.-+. ...=+.|.|. ...+
T Consensus       215 ----------aHs~si--SDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~-~P~flrf~Psl~t~~  281 (1118)
T KOG1275|consen  215 ----------AHSGSI--SDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPY-GPQFLRFHPSLTTRL  281 (1118)
T ss_pred             ----------ccccce--eeeeccCCeEEEeecccccccccccchhhhhhhhhhhccCCccccc-CchhhhhcccccceE
Confidence                      222222  244456777776653         4457889988765543332222 2245778887 4568


Q ss_pred             EEecCCCcEEEEEcCCC-----CEEEEEecCCCcceeEECCCCCeEEEEEcCCCCCC
Q 022716          228 ASASEDLFIDISNVHTG-----RTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQ  279 (293)
Q Consensus       228 ~s~s~d~~i~iw~~~~~-----~~~~~~~~~~~i~~~~~sp~~~~la~~~~d~~~~~  279 (293)
                      +.+|.-|...+-|..+-     ......+....+.+..+|++++.||.|..++.+-.
T Consensus       282 ~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~  338 (1118)
T KOG1275|consen  282 AVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNL  338 (1118)
T ss_pred             EEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEee
Confidence            88889999988884432     12233345556999999999999999998875544

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.16  E-value=7.5e-07  Score=77.65  Aligned_cols=198  Identities=20%  Similarity=0.291  Sum_probs=126.3

Q ss_pred             ccEEEEEECCCCC--eEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEe----CCCeEEEE
Q 022716           21 KKVHSVAWNCTGT--KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATAS----GDKTVRLW   94 (293)
Q Consensus        21 ~~v~~l~~s~~~~--~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~----~d~~i~vw   94 (293)
                      .-+.|++++.+.+  .++.|..+|.|-+-.+...... . ....++|..++++++|++-+.+.|+.|-    .|..+.||
T Consensus        57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-s-~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iw  134 (783)
T KOG1008|consen   57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-S-AEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIW  134 (783)
T ss_pred             CCceeehhhcCCchhhhhhccccCceEEeecCCcccc-c-ceecccccccccccccccccHHHHHhhhhhhcccCCccce
Confidence            3577888776554  5788999999999776532221 1 1235678889999999988767776552    26779999


Q ss_pred             eCCCC--eeeeeeeec----CceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEec
Q 022716           95 DARSG--KCSQQAELS----GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTT  168 (293)
Q Consensus        95 d~~~~--~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  168 (293)
                      |+.+.  .+.....+.    ....+++|..+.+.+++|.....+.++|+|.......     .++               
T Consensus       135 di~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~-----svn---------------  194 (783)
T KOG1008|consen  135 DINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVS-----SVN---------------  194 (783)
T ss_pred             ecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhh-----hhh---------------
Confidence            99776  222221221    1223677778889999999999999999984321100     000               


Q ss_pred             CCCCEEEEEECC-CCCEEEEecCCCcEEEEe-CCCCEEE-EEeeccC----CCeeEEEEccCCC-EEEEecCC-CcEEEE
Q 022716          169 GNAGCYCIAIDP-MGRYFAVGSADSLVSLWD-ISEMLCV-RTFTKLE----WPVRTISFSHTGD-YIASASED-LFIDIS  239 (293)
Q Consensus       169 ~~~~~~~~~~~~-~~~~l~~gs~d~~i~iwd-~~~~~~~-~~~~~~~----~~v~~l~~sp~~~-~l~s~s~d-~~i~iw  239 (293)
                       ...+.-+.++| .+.++++-. |+.|.+|| .++.+.. ..+...+    ..+..++|+|... .+++...| ++|+++
T Consensus       195 -Tk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrly  272 (783)
T KOG1008|consen  195 -TKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLY  272 (783)
T ss_pred             -hhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEe
Confidence             00112355677 567777666 99999999 4443221 1222222    2489999999643 56666655 779999


Q ss_pred             EcC
Q 022716          240 NVH  242 (293)
Q Consensus       240 ~~~  242 (293)
                      ++.
T Consensus       273 di~  275 (783)
T KOG1008|consen  273 DIC  275 (783)
T ss_pred             ccc
Confidence            874

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.14  E-value=0.00083  Score=60.16  Aligned_cols=104  Identities=16%  Similarity=0.158  Sum_probs=71.0

Q ss_pred             EcCCCCEEEEEeCCCeEEEEEccc-----cceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEec-
Q 022716          116 YKPDGTHIAVGNRDDELTILDVRK-----FKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGS-  189 (293)
Q Consensus       116 ~~~~~~~l~~~~~d~~i~l~d~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs-  189 (293)
                      +.++|++...  .++++.++|.++     ...+.....+                     ....-++++|||+++++++ 
T Consensus       284 ~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVG---------------------KsPHGV~vSPDGkylyVank  340 (635)
T PRK02888        284 AVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVP---------------------KNPHGVNTSPDGKYFIANGK  340 (635)
T ss_pred             hhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEECC---------------------CCccceEECCCCCEEEEeCC
Confidence            3467887766  367899999876     2222222211                     2223578899999876655 


Q ss_pred             CCCcEEEEeCCCCEE------------EEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCC
Q 022716          190 ADSLVSLWDISEMLC------------VRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHT  243 (293)
Q Consensus       190 ~d~~i~iwd~~~~~~------------~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~  243 (293)
                      .++++.++|+++...            ..+. .........+|.++|....|--.|..|-.||+.+
T Consensus       341 lS~tVSVIDv~k~k~~~~~~~~~~~~vvaev-evGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        341 LSPTVTVIDVRKLDDLFDGKIKPRDAVVAEP-ELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             CCCcEEEEEChhhhhhhhccCCccceEEEee-ccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence            489999999987542            2222 1233456788999998888888999999999876

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.12  E-value=0.0043  Score=53.14  Aligned_cols=237  Identities=17%  Similarity=0.284  Sum_probs=127.9

Q ss_pred             CCCCCeEEEE---------eCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCC
Q 022716           29 NCTGTKLASG---------SVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG   99 (293)
Q Consensus        29 s~~~~~l~s~---------~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~   99 (293)
                      |||+++++..         +..+...+||+...   ...  .+......+....|+|++ +.++-. .++.|.+++..++
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~---~~~--~l~~~~~~~~~~~~sP~g-~~~~~v-~~~nly~~~~~~~   73 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETG---EIT--PLTPPPPKLQDAKWSPDG-KYIAFV-RDNNLYLRDLATG   73 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTT---EEE--ESS-EETTBSEEEE-SSS-TEEEEE-ETTEEEEESSTTS
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCC---ceE--ECcCCccccccceeecCC-CeeEEE-ecCceEEEECCCC
Confidence            5788877663         33467788888752   221  222225668889999985 444433 4678999988776


Q ss_pred             eeeeeeeec------------------CceEEEEEcCCCCEEEEEeCCC-eE----------------------------
Q 022716          100 KCSQQAELS------------------GENINITYKPDGTHIAVGNRDD-EL----------------------------  132 (293)
Q Consensus       100 ~~~~~~~~~------------------~~~~~~~~~~~~~~l~~~~~d~-~i----------------------------  132 (293)
                      ...+...-.                  +....+-|+||+++|+....|. .+                            
T Consensus        74 ~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~  153 (353)
T PF00930_consen   74 QETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGD  153 (353)
T ss_dssp             EEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS
T ss_pred             CeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCC
Confidence            443321111                  1123578999999988755322 22                            


Q ss_pred             -------EEEEccccceeeee------cccceeeeeEEecCCCEEEEe-cCC--------------CCE-----------
Q 022716          133 -------TILDVRKFKPIHRR------KFGYEVNEIAWNMTGEMFFLT-TGN--------------AGC-----------  173 (293)
Q Consensus       133 -------~l~d~~~~~~~~~~------~~~~~~~~v~~~~~~~~~~~~-~~~--------------~~~-----------  173 (293)
                             .++|+.+.+.....      ....-+..+.|.+++..+.+. ...              ..+           
T Consensus       154 ~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~W  233 (353)
T PF00930_consen  154 PNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGW  233 (353)
T ss_dssp             ---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSS
T ss_pred             cCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcc
Confidence                   22333322211000      011224567787777622221 110              000           


Q ss_pred             ----EEEEEC-CCC-CEEEEecCCCcEEE--EeCCCCEEEEEeeccCCCeeE-EEEccCCCEE-EEecCC----CcEEEE
Q 022716          174 ----YCIAID-PMG-RYFAVGSADSLVSL--WDISEMLCVRTFTKLEWPVRT-ISFSHTGDYI-ASASED----LFIDIS  239 (293)
Q Consensus       174 ----~~~~~~-~~~-~~l~~gs~d~~i~i--wd~~~~~~~~~~~~~~~~v~~-l~~sp~~~~l-~s~s~d----~~i~iw  239 (293)
                          ....+. +++ .++.....+|--+|  ++...+. .+.++...+.|.. +.++++++.| .++..+    ..++.-
T Consensus       234 v~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v  312 (353)
T PF00930_consen  234 VDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRV  312 (353)
T ss_dssp             SSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEE
T ss_pred             eeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEE
Confidence                022332 444 44555556675554  4555554 4466667778855 6788887765 455543    346666


Q ss_pred             EcCCCCEEEEEecCCCcc-eeEECCCCCeEEEEEc
Q 022716          240 NVHTGRTVHQIPCRAAMN-SVEWNPKYNLLAYAGD  273 (293)
Q Consensus       240 ~~~~~~~~~~~~~~~~i~-~~~~sp~~~~la~~~~  273 (293)
                      ++..+..+..+.+..... .+.|||++++++..-.
T Consensus       313 ~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s  347 (353)
T PF00930_consen  313 SLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTYS  347 (353)
T ss_dssp             ETTETTEEEESSTTSSTTEEEEE-TTSSEEEEEEE
T ss_pred             EeCCCCCeEeccCCCCCceEEEECCCCCEEEEEEc
Confidence            666356677777776777 9999999999876644

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.11  E-value=0.0034  Score=54.65  Aligned_cols=234  Identities=13%  Similarity=0.148  Sum_probs=124.2

Q ss_pred             CCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeE-EEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeeeecCc
Q 022716           32 GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQ-LCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGE  110 (293)
Q Consensus        32 ~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~-~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~  110 (293)
                      +..+..++.+|.+..+|.++..  ......+.+   .+.+ ....   ...++.+..++.+.-+|.++|+.+-.......
T Consensus       120 ~~~v~v~~~~g~l~ald~~tG~--~~W~~~~~~---~~~ssP~v~---~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~  191 (394)
T PRK11138        120 GGKVYIGSEKGQVYALNAEDGE--VAWQTKVAG---EALSRPVVS---DGLVLVHTSNGMLQALNESDGAVKWTVNLDVP  191 (394)
T ss_pred             CCEEEEEcCCCEEEEEECCCCC--CcccccCCC---ceecCCEEE---CCEEEEECCCCEEEEEEccCCCEeeeecCCCC
Confidence            4456667788888888876432  222222222   1111 1111   23566677889999999999987665543322


Q ss_pred             eEEEE--EcC--CCCEEEEEeCCCeEEEEEccccceeeeecccce-----e---eeeEEec--CCCEEEEecCCCCEEEE
Q 022716          111 NINIT--YKP--DGTHIAVGNRDDELTILDVRKFKPIHRRKFGYE-----V---NEIAWNM--TGEMFFLTTGNAGCYCI  176 (293)
Q Consensus       111 ~~~~~--~~~--~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~-----~---~~v~~~~--~~~~~~~~~~~~~~~~~  176 (293)
                      ...+.  -+|  .+..++.++.++.+..+|..+.+..-.......     .   ..+.-.|  .+..+++...++.+.++
T Consensus       192 ~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~al  271 (394)
T PRK11138        192 SLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVAL  271 (394)
T ss_pred             cccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEE
Confidence            11100  011  123567777888888888877654333221100     0   0000000  12222332223333332


Q ss_pred             EE-----------------CCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCC-CeeEEEEccCCCEEEEecCCCcEEE
Q 022716          177 AI-----------------DPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEW-PVRTISFSHTGDYIASASEDLFIDI  238 (293)
Q Consensus       177 ~~-----------------~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~-~v~~l~~sp~~~~l~s~s~d~~i~i  238 (293)
                      ..                 ...+..+..++.+|.+..+|.++++.+=....... ...+...  .+.+|+.++.||.+..
T Consensus       272 d~~tG~~~W~~~~~~~~~~~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~  349 (394)
T PRK11138        272 DLRSGQIVWKREYGSVNDFAVDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHW  349 (394)
T ss_pred             ECCCCCEEEeecCCCccCcEEECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEE
Confidence            21                 01345666778899999999988865432221111 1111111  2567888899999999


Q ss_pred             EEcCCCCEEEEEecC-CCcceeEECC--CCCeEEEEEcCCCCC
Q 022716          239 SNVHTGRTVHQIPCR-AAMNSVEWNP--KYNLLAYAGDDKNKY  278 (293)
Q Consensus       239 w~~~~~~~~~~~~~~-~~i~~~~~sp--~~~~la~~~~d~~~~  278 (293)
                      .|..+|+.+...... ..+.+   +|  .+..|..++.|+.++
T Consensus       350 ld~~tG~~~~~~~~~~~~~~s---~P~~~~~~l~v~t~~G~l~  389 (394)
T PRK11138        350 INREDGRFVAQQKVDSSGFLS---EPVVADDKLLIQARDGTVY  389 (394)
T ss_pred             EECCCCCEEEEEEcCCCccee---CCEEECCEEEEEeCCceEE
Confidence            999999987665432 22221   22  345777777776443

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.04  E-value=3.8e-05  Score=67.25  Aligned_cols=90  Identities=13%  Similarity=0.181  Sum_probs=73.8

Q ss_pred             EEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCee-EEEEccCCCEEEEecCCCcEEEEEcCCCCEEEE--
Q 022716          173 CYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVR-TISFSHTGDYIASASEDLFIDISNVHTGRTVHQ--  249 (293)
Q Consensus       173 ~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~-~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~--  249 (293)
                      +.-+.|+|.-..+|.++.+|.|.+..+. ..++-++..+..+++ +++|.|||+.||.|-.||+|++-|+.++..+..  
T Consensus        23 i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~~  101 (665)
T KOG4640|consen   23 IKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSFL  101 (665)
T ss_pred             eEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceeccc
Confidence            3456677888899999999999999887 666777776766777 999999999999999999999999999987766  


Q ss_pred             EecCCCcceeEECC
Q 022716          250 IPCRAAMNSVEWNP  263 (293)
Q Consensus       250 ~~~~~~i~~~~~sp  263 (293)
                      +.-...|.++-|.|
T Consensus       102 ~s~e~~is~~~w~~  115 (665)
T KOG4640|consen  102 FSVETDISKGIWDR  115 (665)
T ss_pred             cccccchheeeccc
Confidence            33345677788864

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.02  E-value=0.0022  Score=56.12  Aligned_cols=189  Identities=16%  Similarity=0.240  Sum_probs=95.6

Q ss_pred             CcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEE-cccccee
Q 022716           65 HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILD-VRKFKPI  143 (293)
Q Consensus        65 h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d-~~~~~~~  143 (293)
                      ..-....+.++|.+. .++ ...||.-.++.....+-    ...+.....+|.+.++ +++-...++|.++. +.... .
T Consensus        31 ~~~~p~~ls~npngr-~v~-V~g~geY~iyt~~~~r~----k~~G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~~-~  102 (443)
T PF04053_consen   31 CEIYPQSLSHNPNGR-FVL-VCGDGEYEIYTALAWRN----KAFGSGLSFVWSSRNR-YAVLESSSTIKIYKNFKNEV-V  102 (443)
T ss_dssp             -SS--SEEEE-TTSS-EEE-EEETTEEEEEETTTTEE----EEEEE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-T-T
T ss_pred             CCcCCeeEEECCCCC-EEE-EEcCCEEEEEEccCCcc----cccCceeEEEEecCcc-EEEEECCCeEEEEEcCcccc-c
Confidence            344567889999754 433 36678888887433221    2234555788888554 56666678888862 22111 1


Q ss_pred             eeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccC
Q 022716          144 HRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHT  223 (293)
Q Consensus       144 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~  223 (293)
                      .....+..                     +..+.  + |..|...+.+ .|.+||..++..++.+..  .+|..+.|+++
T Consensus       103 k~i~~~~~---------------------~~~If--~-G~LL~~~~~~-~i~~yDw~~~~~i~~i~v--~~vk~V~Ws~~  155 (443)
T PF04053_consen  103 KSIKLPFS---------------------VEKIF--G-GNLLGVKSSD-FICFYDWETGKLIRRIDV--SAVKYVIWSDD  155 (443)
T ss_dssp             -----SS----------------------EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TT
T ss_pred             eEEcCCcc---------------------cceEE--c-CcEEEEECCC-CEEEEEhhHcceeeEEec--CCCcEEEEECC
Confidence            11111111                     11121  2 6666666544 899999999988887743  24899999999


Q ss_pred             CCEEEEecCCCcEEEEEcCCC-----------CEEEEEec-CCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeee
Q 022716          224 GDYIASASEDLFIDISNVHTG-----------RTVHQIPC-RAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE  291 (293)
Q Consensus       224 ~~~l~s~s~d~~i~iw~~~~~-----------~~~~~~~~-~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~  291 (293)
                      |.++|..+.+ .++|.+....           .....+.. ..+|.+..|..+  .|.++....-.|...+.+.-|-++|
T Consensus       156 g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~~lkYl~~Ge~~~i~~ld  232 (443)
T PF04053_consen  156 GELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSNHLKYLVNGETGIIAHLD  232 (443)
T ss_dssp             SSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TTEEEEEETTEEEEEEE-S
T ss_pred             CCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCCeEEEEEcCCcceEEEcC
Confidence            9999998876 4555544322           02222222 567899999665  6666666544443444444555554

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.01  E-value=0.00092  Score=58.25  Aligned_cols=187  Identities=16%  Similarity=0.233  Sum_probs=107.4

Q ss_pred             ccccEEEEEECCCCCeEEEEeC---C-CcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEE
Q 022716           19 HKKKVHSVAWNCTGTKLASGSV---D-QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLW   94 (293)
Q Consensus        19 h~~~v~~l~~s~~~~~l~s~~~---d-g~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vw   94 (293)
                      -...+..-+|+|++..++.-+.   . ..+.+++++......  ...+.++..   .-.|+|++..++++...|+...+|
T Consensus       191 ~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~--i~~~~g~~~---~P~fspDG~~l~f~~~rdg~~~iy  265 (425)
T COG0823         191 SGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPV--ILNFNGNNG---APAFSPDGSKLAFSSSRDGSPDIY  265 (425)
T ss_pred             cCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccce--eeccCCccC---CccCCCCCCEEEEEECCCCCccEE
Confidence            3456777889999987764422   2 357777877543322  233444433   447899988888888888876555


Q ss_pred             --eCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeC-CC--eEEEEEccccceeeeecccceeeeeEEecCCCEEEEecC
Q 022716           95 --DARSGKCSQQAELSGENINITYKPDGTHIAVGNR-DD--ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG  169 (293)
Q Consensus        95 --d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~--~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  169 (293)
                        |+..+.........+....-.|+|||++++-.+. .|  .|.+.|+......+          +.++           
T Consensus       266 ~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~r----------iT~~-----------  324 (425)
T COG0823         266 LMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTR----------LTFS-----------  324 (425)
T ss_pred             EEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeE----------eecc-----------
Confidence              6666554332333444446679999999887763 34  34555554433211          1111           


Q ss_pred             CCCEEEEEECCCCCEEEEecC-CCc--EEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecC
Q 022716          170 NAGCYCIAIDPMGRYFAVGSA-DSL--VSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASE  232 (293)
Q Consensus       170 ~~~~~~~~~~~~~~~l~~gs~-d~~--i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~  232 (293)
                      ......-.++|+|++++..+. +|.  |.+.|+.++...+.+ ........-++.|+++.+...+.
T Consensus       325 ~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~l-t~~~~~e~ps~~~ng~~i~~~s~  389 (425)
T COG0823         325 GGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRIL-TSTYLNESPSWAPNGRMIMFSSG  389 (425)
T ss_pred             CCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEc-cccccCCCCCcCCCCceEEEecc
Confidence            111113456788888776664 343  555566554432222 22233445567888887755544

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.01  E-value=0.0016  Score=59.43  Aligned_cols=213  Identities=10%  Similarity=0.093  Sum_probs=118.6

Q ss_pred             CeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeeeecCce-EEEEEc-CCCCEEEEEeCCC-----eEEEEEcccc
Q 022716           68 SVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGEN-INITYK-PDGTHIAVGNRDD-----ELTILDVRKF  140 (293)
Q Consensus        68 ~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~-~~~~~l~~~~~d~-----~i~l~d~~~~  140 (293)
                      .|.++  ++. +..++-|+.+|.|.+.+-.- +..+.++....- +..-+. .+...|++.++|.     .+++||++..
T Consensus        27 ~isc~--~s~-~~~vvigt~~G~V~~Ln~s~-~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~  102 (933)
T KOG2114|consen   27 AISCC--SSS-TGSVVIGTADGRVVILNSSF-QLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKV  102 (933)
T ss_pred             ceeEE--cCC-CceEEEeeccccEEEecccc-eeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEeccccc
Confidence            44443  443 45788899999988876322 221222222111 222222 3335777777654     4899998654


Q ss_pred             ceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCC----CCEEEEEeeccCCCee
Q 022716          141 KPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDIS----EMLCVRTFTKLEWPVR  216 (293)
Q Consensus       141 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~----~~~~~~~~~~~~~~v~  216 (293)
                      .....   +.-+....-.+.    .......+..+++++.+-+.+|+|-.+|.|..+.=+    .+.+..-...-..||+
T Consensus       103 ~~n~s---P~c~~~~ri~~~----~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pIT  175 (933)
T KOG2114|consen  103 DKNNS---PQCLYEHRIFTI----KNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPIT  175 (933)
T ss_pred             CCCCC---cceeeeeeeecc----CCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCce
Confidence            32110   000000000000    000124567789999999999999999999999521    2222221223356999


Q ss_pred             EEEEccCCCEEEEecCCCcEEEEEcCCCCE-EEEEe-cCCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeee
Q 022716          217 TISFSHTGDYIASASEDLFIDISNVHTGRT-VHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE  291 (293)
Q Consensus       217 ~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~-~~~~~-~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~  291 (293)
                      .+.|..+++.++-+..-..|.+|.+..... ...+. +..++++.+|++.-+.|..|+...--.+...+.-.+|.||
T Consensus       176 gL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd~~~~cfaf~  252 (933)
T KOG2114|consen  176 GLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYDSDGRGPCFAFE  252 (933)
T ss_pred             eeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCceEEEEcCCCcceeeeec
Confidence            999999888754455556677887763232 23243 3457899999986665555554432222333555566555

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.01  E-value=0.00027  Score=65.27  Aligned_cols=144  Identities=17%  Similarity=0.269  Sum_probs=91.7

Q ss_pred             CCEEE-EEeCCCeEEEEeCCCCeeeeeeeecCceEEEEEcCC-------CCEEEEEeCCCeEEEEEccccceeeeecccc
Q 022716           79 ADLIA-TASGDKTVRLWDARSGKCSQQAELSGENINITYKPD-------GTHIAVGNRDDELTILDVRKFKPIHRRKFGY  150 (293)
Q Consensus        79 ~~~l~-s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-------~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~  150 (293)
                      ...|+ .......+.-.|+..|+.+..+..+....-..+.|+       ....++|-.++.+..||+|-...        
T Consensus       493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~--------  564 (794)
T PF08553_consen  493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGN--------  564 (794)
T ss_pred             cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCC--------
Confidence            34433 334457788889999999888887665433445554       23567888899999999985321        


Q ss_pred             eeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEE-EeeccCCCeeEEEEccCCCEEEE
Q 022716          151 EVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVR-TFTKLEWPVRTISFSHTGDYIAS  229 (293)
Q Consensus       151 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~-~~~~~~~~v~~l~~sp~~~~l~s  229 (293)
                         .++|+.....    .......|++.+.+ .+||+|+.+|.|++||- .+...+ .+.+...||..|+.+.||+|++.
T Consensus       565 ---k~v~~~~k~Y----~~~~~Fs~~aTt~~-G~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwila  635 (794)
T PF08553_consen  565 ---KLVDSQSKQY----SSKNNFSCFATTED-GYIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILA  635 (794)
T ss_pred             ---ceeecccccc----ccCCCceEEEecCC-ceEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEE
Confidence               0111111100    12223456665544 46899999999999994 333333 35577889999999999999754


Q ss_pred             ecCCCcEEEEE
Q 022716          230 ASEDLFIDISN  240 (293)
Q Consensus       230 ~s~d~~i~iw~  240 (293)
                      -.. ..+-+.+
T Consensus       636 Tc~-tyLlLi~  645 (794)
T PF08553_consen  636 TCK-TYLLLID  645 (794)
T ss_pred             eec-ceEEEEE
Confidence            333 3444444

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>smart00320 WD40 WD40 repeats

Probab=97.99  E-value=1.7e-05  Score=43.09  Aligned_cols=36  Identities=39%  Similarity=0.571  Sum_probs=32.5

Q ss_pred             ceeecCccccEEEEEECCCCCeEEEEeCCCcEEEee
Q 022716           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWH   48 (293)
Q Consensus        13 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~   48 (293)
                      ...+.+|...|.++.|++.+.++++++.|+.+++|+
T Consensus         5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            455678999999999999999999999999999995

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=97.96  E-value=7.6e-05  Score=60.06  Aligned_cols=175  Identities=17%  Similarity=0.326  Sum_probs=109.0

Q ss_pred             eee-cCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCc-----CCeeEEEEcCCCCCEEEEEeC
Q 022716           14 REY-TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHA-----DSVDQLCWDPKHADLIATASG   87 (293)
Q Consensus        14 ~~~-~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~-----~~i~~~~~~~~~~~~l~s~~~   87 (293)
                      +.+ ..|.-.|.++.|+.|...++++. |-.|.+|+++... +.......+.|+     ..|++..|+|....++.-.+.
T Consensus       165 rvyaNaH~yhiNSiS~NsD~et~lSaD-dLrINLWnl~i~D-~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsS  242 (460)
T COG5170         165 RVYANAHPYHINSISFNSDKETLLSAD-DLRINLWNLEIID-GSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSS  242 (460)
T ss_pred             eeccccceeEeeeeeecCchheeeecc-ceeeeeccccccC-CceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecC
Confidence            344 67888999999999988888765 7888999986432 122222333443     457888999988888877888


Q ss_pred             CCeEEEEeCCCCe-eee-----eeeec-----------CceEEEEEcCCCCEEEEEeCCCeEEEEEcccc-ceeeeeccc
Q 022716           88 DKTVRLWDARSGK-CSQ-----QAELS-----------GENINITYKPDGTHIAVGNRDDELTILDVRKF-KPIHRRKFG  149 (293)
Q Consensus        88 d~~i~vwd~~~~~-~~~-----~~~~~-----------~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~-~~~~~~~~~  149 (293)
                      -|.|++-|++... |..     .....           ..+..+.|+++|+++++-. -.++++||.+.. .|+....+.
T Consensus       243 kG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvnm~k~pikTi~~h  321 (460)
T COG5170         243 KGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVNMAKNPIKTIPMH  321 (460)
T ss_pred             CCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEecccccCCceeechH
Confidence            9999999987432 111     11111           1233478999999887754 579999998754 344443221


Q ss_pred             ceeeeeEEecCCCEEEEecCCCC---EEEEEECCCCCEEEEecCCCcEEEEeC
Q 022716          150 YEVNEIAWNMTGEMFFLTTGNAG---CYCIAIDPMGRYFAVGSADSLVSLWDI  199 (293)
Q Consensus       150 ~~~~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~gs~d~~i~iwd~  199 (293)
                      ...+.       ++. ..-.++.   -.-+.|+.+.+.+++|+-.+..-+|-.
T Consensus       322 ~~l~~-------~l~-d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~  366 (460)
T COG5170         322 CDLMD-------ELN-DVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPT  366 (460)
T ss_pred             HHHHH-------HHH-hhhhccceeeeEEEEecCCcccccccccccceeeecc
Confidence            10000       000 0000111   124667778888888888777777753

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=97.94  E-value=0.0065  Score=48.68  Aligned_cols=233  Identities=16%  Similarity=0.137  Sum_probs=113.8

Q ss_pred             EEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeC-CcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeee
Q 022716           26 VAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG-HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQ  104 (293)
Q Consensus        26 l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~-h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~  104 (293)
                      ++.+++|+.||. -.|..|.|=...++-.........+. ....=..++|+|+ +.+|+.+...|+|+++|+....+...
T Consensus         3 ~~~~~~Gk~lAi-~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD-~tlLa~a~S~G~i~vfdl~g~~lf~I   80 (282)
T PF15492_consen    3 LALSSDGKLLAI-LQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPD-CTLLAYAESTGTIRVFDLMGSELFVI   80 (282)
T ss_pred             eeecCCCcEEEE-EeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCC-CcEEEEEcCCCeEEEEecccceeEEc
Confidence            456788887654 45777777654433222222222222 1223457899997 56889999999999999865433211


Q ss_pred             ---e----eecCceEEEEEcCC------CCEEEEEeCCCeEEEEEc--cccceeeeecccceeeeeEEecCCCEEEEecC
Q 022716          105 ---A----ELSGENINITYKPD------GTHIAVGNRDDELTILDV--RKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG  169 (293)
Q Consensus       105 ---~----~~~~~~~~~~~~~~------~~~l~~~~~d~~i~l~d~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  169 (293)
                         .    .....+..+.|.+.      ...|++-..+|.++=+=+  .+.+.-+      +...+.+        ....
T Consensus        81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~------e~hsfsf--------~~~y  146 (282)
T PF15492_consen   81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQ------ENHSFSF--------SSHY  146 (282)
T ss_pred             CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcce------eeEEEEe--------cccC
Confidence               0    01122233444321      113455555555443322  1100000      0111111        1112


Q ss_pred             CCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeE---EEEccCCCEEEEecCCCcE------EEEE
Q 022716          170 NAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRT---ISFSHTGDYIASASEDLFI------DISN  240 (293)
Q Consensus       170 ~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~---l~~sp~~~~l~s~s~d~~i------~iw~  240 (293)
                      ..++.++.++|..+.|++|+....      +++.    -+.....+++   +.=.|-.+.+ +..+|...      .++.
T Consensus       147 p~Gi~~~vy~p~h~LLlVgG~~~~------~~~~----s~a~~~GLtaWRiL~~~Pyyk~v-~~~~~~~~~~~~~~~~~~  215 (282)
T PF15492_consen  147 PHGINSAVYHPKHRLLLVGGCEQN------QDGM----SKASSCGLTAWRILSDSPYYKQV-TSSEDDITASSKRRGLLR  215 (282)
T ss_pred             CCceeEEEEcCCCCEEEEeccCCC------CCcc----ccccccCceEEEEcCCCCcEEEc-cccCccccccccccceee
Confidence            346778888888888777765432      0100    0011111111   1112222221 22222211      2232


Q ss_pred             cCCCCEE-EEEecCCCcceeEECCCCCeEEEEEcCCCCCCCCcceE
Q 022716          241 VHTGRTV-HQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVF  285 (293)
Q Consensus       241 ~~~~~~~-~~~~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~  285 (293)
                      +-+.+.. ++.+....|-.+..||||+.||+...+|.+..|+-=.+
T Consensus       216 ~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL  261 (282)
T PF15492_consen  216 IPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSL  261 (282)
T ss_pred             ccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcc
Confidence            2222211 12234567899999999999999999987776655333

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.92  E-value=0.0041  Score=54.52  Aligned_cols=138  Identities=17%  Similarity=0.210  Sum_probs=71.3

Q ss_pred             eeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEE
Q 022716           14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL   93 (293)
Q Consensus        14 ~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~v   93 (293)
                      +...........+.++|+|++++.+ .||.-.|+.....   +  ...    .+.-....|.+.  +.++.-.....|.+
T Consensus        26 k~lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~---r--~k~----~G~g~~~vw~~~--n~yAv~~~~~~I~I   93 (443)
T PF04053_consen   26 KELGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAW---R--NKA----FGSGLSFVWSSR--NRYAVLESSSTIKI   93 (443)
T ss_dssp             EEEEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTT---E--EEE----EEE-SEEEE-TS--SEEEEE-TTS-EEE
T ss_pred             ccCCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCC---c--ccc----cCceeEEEEecC--ccEEEEECCCeEEE
Confidence            3343444568899999999998884 4677777763211   1  111    123345678763  34666677888998


Q ss_pred             EeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEec
Q 022716           94 WDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTT  168 (293)
Q Consensus        94 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  168 (293)
                      +.--..+....+.....+..+..   |..|...+.+ .+.+||..+.+.+++..... ++.+.|++.++++.+.+
T Consensus        94 ~kn~~~~~~k~i~~~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t  163 (443)
T PF04053_consen   94 YKNFKNEVVKSIKLPFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVSA-VKYVIWSDDGELVALVT  163 (443)
T ss_dssp             EETTEE-TT-----SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS-E--EEEEE-TTSSEEEEE-
T ss_pred             EEcCccccceEEcCCcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecCC-CcEEEEECCCCEEEEEe
Confidence            63222221112222322223322   7777777644 89999999988888776553 67788877777666554

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=97.86  E-value=8.8e-06  Score=73.81  Aligned_cols=192  Identities=14%  Similarity=0.190  Sum_probs=124.2

Q ss_pred             eeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeeeecCc-eEEEEEcCCCCEEEEEeCCC--eEEEEEcc
Q 022716           62 LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGE-NINITYKPDGTHIAVGNRDD--ELTILDVR  138 (293)
Q Consensus        62 ~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~d~--~i~l~d~~  138 (293)
                      ++.|...-++++|+.. .+.|+.|+..|.|+++++.+|........++. ++.+.=+.||..+++.+.-.  ...+|++.
T Consensus      1097 frd~~~~fTc~afs~~-~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~ 1175 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFSGG-TNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDAS 1175 (1516)
T ss_pred             hhccccceeeEEeecC-CceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccc
Confidence            4567778889999875 56788899999999999999976666655443 33455566777666655322  45688875


Q ss_pred             cc-ceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEE-eec---cCC
Q 022716          139 KF-KPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRT-FTK---LEW  213 (293)
Q Consensus       139 ~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~-~~~---~~~  213 (293)
                      .. .+.+...                        ...++.|+..-..-+.|+......+||++++..+.+ +.+   ...
T Consensus      1176 s~~~~~Hsf~------------------------ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y 1231 (1516)
T KOG1832|consen 1176 STGGPRHSFD------------------------EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSY 1231 (1516)
T ss_pred             cccCcccccc------------------------ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhh
Confidence            41 1111110                        112455554444456666667799999998876655 222   122


Q ss_pred             CeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEecCCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEE
Q 022716          214 PVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIY  288 (293)
Q Consensus       214 ~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~  288 (293)
                      .=+...|||+..++.   .||.  +||++..+.++.+..-..--.=.|||+|+.++.-+.     +||.-+||++
T Consensus      1232 ~~n~a~FsP~D~LIl---ndGv--LWDvR~~~aIh~FD~ft~~~~G~FHP~g~eVIINSE-----IwD~RTF~lL 1296 (1516)
T KOG1832|consen 1232 SNNLAHFSPCDTLIL---NDGV--LWDVRIPEAIHRFDQFTDYGGGGFHPSGNEVIINSE-----IWDMRTFKLL 1296 (1516)
T ss_pred             hccccccCCCcceEe---eCce--eeeeccHHHHhhhhhheecccccccCCCceEEeech-----hhhhHHHHHH
Confidence            236678999887664   3453  899988877776643221123469999999887664     5676666654

>smart00320 WD40 WD40 repeats

Probab=97.85  E-value=7.9e-05  Score=40.24  Aligned_cols=38  Identities=34%  Similarity=0.494  Sum_probs=33.3

Q ss_pred             EEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEE
Q 022716          203 LCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISN  240 (293)
Q Consensus       203 ~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~  240 (293)
                      .....+..|...|.+++|+|+++++++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            44566777888999999999999999999999999995

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.82  E-value=0.0099  Score=47.16  Aligned_cols=237  Identities=14%  Similarity=0.122  Sum_probs=126.9

Q ss_pred             CeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeeeecCce-
Q 022716           33 TKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGEN-  111 (293)
Q Consensus        33 ~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~-  111 (293)
                      .+++.||..+.+..-|..+..  ......+.   ..|-+-+..  -+++++-|...|.+.+.+.++|.....+...+.+ 
T Consensus        24 T~v~igSHs~~~~avd~~sG~--~~We~ilg---~RiE~sa~v--vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk   96 (354)
T KOG4649|consen   24 TLVVIGSHSGIVIAVDPQSGN--LIWEAILG---VRIECSAIV--VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVK   96 (354)
T ss_pred             eEEEEecCCceEEEecCCCCc--EEeehhhC---ceeeeeeEE--ECCEEEEEEccCcEEEEEecchhheeeeeehhhhc
Confidence            455677777777766654321  11111111   112221211  1357888999999999999999655544433332 


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeee-eEEecCCCEEEEecCCCCEEEEEE------------
Q 022716          112 INITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNE-IAWNMTGEMFFLTTGNAGCYCIAI------------  178 (293)
Q Consensus       112 ~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~------------  178 (293)
                      ......+++..+..|+.|++....|.++...+...+.+..+.. -+.++....++++...+.+..+..            
T Consensus        97 ~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~~~~~~w~~~  176 (354)
T KOG4649|consen   97 VRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPYSSTEFWAAT  176 (354)
T ss_pred             cceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCCCcceehhhh
Confidence            3455678899999999999999999999888777665544322 223332223333332222222111            


Q ss_pred             -------CC--CCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeE-EEEc-cCCCEEEEecCCCcEE--------EE
Q 022716          179 -------DP--MGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRT-ISFS-HTGDYIASASEDLFID--------IS  239 (293)
Q Consensus       179 -------~~--~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~-l~~s-p~~~~l~s~s~d~~i~--------iw  239 (293)
                             +|  -+..+..+.-||.+.-++ ..++.+..+. ...||.. =+-+ |..+.+..+.++.++.        +|
T Consensus       177 ~~~PiF~splcv~~sv~i~~VdG~l~~f~-~sG~qvwr~~-t~GpIf~~Pc~s~Ps~q~i~~~~~~Cf~~~~p~~ghL~w  254 (354)
T KOG4649|consen  177 RFGPIFASPLCVGSSVIITTVDGVLTSFD-ESGRQVWRPA-TKGPIFMEPCESRPSCQQISLENENCFCAPLPIAGHLLW  254 (354)
T ss_pred             cCCccccCceeccceEEEEEeccEEEEEc-CCCcEEEeec-CCCceecccccCCCcceEEEEecCCeEEEeccccceEEE
Confidence                   11  134455566777777777 5555554332 2233321 1112 5556777777777664        45


Q ss_pred             EcCCCCEEEEEecCCCcceeEEC-CCC---CeEEEEEcCCCCCCC
Q 022716          240 NVHTGRTVHQIPCRAAMNSVEWN-PKY---NLLAYAGDDKNKYQA  280 (293)
Q Consensus       240 ~~~~~~~~~~~~~~~~i~~~~~s-p~~---~~la~~~~d~~~~~~  280 (293)
                      ..++|...+.+-.  +--..+++ |.+   .+++.++.|+..++.
T Consensus       255 ~~~~g~t~~vy~~--p~l~F~~h~~~~S~~~ll~~~s~dgkv~il  297 (354)
T KOG4649|consen  255 ATQSGTTLHVYLS--PKLRFDLHSPGISYPKLLRRSSGDGKVMIL  297 (354)
T ss_pred             EecCCcEEEEEeC--cccceeccCCCCcchhhhhhhcCCCcEEEE
Confidence            5555533333211  10112222 222   356666667666654

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.82  E-value=0.018  Score=50.12  Aligned_cols=236  Identities=9%  Similarity=0.034  Sum_probs=124.6

Q ss_pred             CCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcC--------Cee-EEEEcCCCCCEEEEEeCCCeEEEEeCCCCee
Q 022716           31 TGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHAD--------SVD-QLCWDPKHADLIATASGDKTVRLWDARSGKC  101 (293)
Q Consensus        31 ~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~--------~i~-~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~  101 (293)
                      .+..+..++.+|.+..+|.++..  ......+.....        .+. .+..  . .+.++.++.++.+.-+|.++|+.
T Consensus        68 ~~~~vy~~~~~g~l~ald~~tG~--~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~-~~~v~v~~~~g~l~ald~~tG~~  142 (394)
T PRK11138         68 AYNKVYAADRAGLVKALDADTGK--EIWSVDLSEKDGWFSKNKSALLSGGVTV--A-GGKVYIGSEKGQVYALNAEDGEV  142 (394)
T ss_pred             ECCEEEEECCCCeEEEEECCCCc--EeeEEcCCCcccccccccccccccccEE--E-CCEEEEEcCCCEEEEEECCCCCC
Confidence            35577778888888888876432  223222222100        010 1111  1 24566778899999999999987


Q ss_pred             eeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeeccccee-------eeeEEecCCCEEEEecCCCCEE
Q 022716          102 SQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEV-------NEIAWNMTGEMFFLTTGNAGCY  174 (293)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~~~~~~~~  174 (293)
                      +-.....+...+-..- .+..++++..++.+..+|.++.+.+-....+.+.       .-+..   +..+++...++.+.
T Consensus       143 ~W~~~~~~~~~ssP~v-~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~---~~~v~~~~~~g~v~  218 (394)
T PRK11138        143 AWQTKVAGEALSRPVV-SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA---FGGAIVGGDNGRVS  218 (394)
T ss_pred             cccccCCCceecCCEE-ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE---CCEEEEEcCCCEEE
Confidence            6665554433221111 2346777788899999998877765443321100       00000   01111111111111


Q ss_pred             EE----------------------------EECC--CCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCC
Q 022716          175 CI----------------------------AIDP--MGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTG  224 (293)
Q Consensus       175 ~~----------------------------~~~~--~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~  224 (293)
                      ++                            ..+|  .+..+..++.+|.+..+|..+++.+=+.. .. ....+  ...+
T Consensus       219 a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~-~~-~~~~~--~~~~  294 (394)
T PRK11138        219 AVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKRE-YG-SVNDF--AVDG  294 (394)
T ss_pred             EEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeec-CC-CccCc--EEEC
Confidence            11                            1112  24456667778999999998886543221 11 11111  2346


Q ss_pred             CEEEEecCCCcEEEEEcCCCCEEEEEec-C-CCcceeEECCCCCeEEEEEcCCCCCCCC
Q 022716          225 DYIASASEDLFIDISNVHTGRTVHQIPC-R-AAMNSVEWNPKYNLLAYAGDDKNKYQAD  281 (293)
Q Consensus       225 ~~l~s~s~d~~i~iw~~~~~~~~~~~~~-~-~~i~~~~~sp~~~~la~~~~d~~~~~~~  281 (293)
                      ..++.++.|+.+...|..+|+.+-.... . ....+...  .+.++..++.++.++..+
T Consensus       295 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld  351 (394)
T PRK11138        295 GRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWIN  351 (394)
T ss_pred             CEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEE
Confidence            6777888899999999999876543321 1 11111111  245566666666665433

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.76  E-value=0.022  Score=49.34  Aligned_cols=227  Identities=20%  Similarity=0.218  Sum_probs=142.1

Q ss_pred             cEEEEEECCCCCeEEEEeC-CCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCe
Q 022716           22 KVHSVAWNCTGTKLASGSV-DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGK  100 (293)
Q Consensus        22 ~v~~l~~s~~~~~l~s~~~-dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~  100 (293)
                      ....+..++++..+..... ...+..-+...   ..... ....-...-..+..++.+...+++...+..|.+.|....+
T Consensus        32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~---n~~~~-~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~  107 (381)
T COG3391          32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATS---NTVTQ-SLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNT  107 (381)
T ss_pred             CCceeEEcCccCEEEEEeecCceeeeccccc---ceeee-eccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccc
Confidence            4556778888865543332 22333333221   11111 0000001223556677766677777778999999988877


Q ss_pred             eeeeeeecCceEEEEEcCCCCEEEEEeC---CCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEE
Q 022716          101 CSQQAELSGENINITYKPDGTHIAVGNR---DDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIA  177 (293)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~---d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  177 (293)
                      ..........+..++++|+++.+.+...   ++++.+.|..+.........+                    ..+ ..++
T Consensus       108 ~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG--------------------~~P-~~~a  166 (381)
T COG3391         108 VLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVG--------------------NTP-TGVA  166 (381)
T ss_pred             eeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecC--------------------CCc-ceEE
Confidence            7776666667788999999988777665   678888887766654432211                    112 5688


Q ss_pred             ECCCCCEEEEe-cCCCcEEEEeCCCCEEEE-E---eeccCCCeeEEEEccCCCEEEEecC---CCcEEEEEcCCCCEEEE
Q 022716          178 IDPMGRYFAVG-SADSLVSLWDISEMLCVR-T---FTKLEWPVRTISFSHTGDYIASASE---DLFIDISNVHTGRTVHQ  249 (293)
Q Consensus       178 ~~~~~~~l~~g-s~d~~i~iwd~~~~~~~~-~---~~~~~~~v~~l~~sp~~~~l~s~s~---d~~i~iw~~~~~~~~~~  249 (293)
                      ++|++..+.+. ..++.|.+.|.......+ .   ..........+.++|+|.++...-.   ++.+.+.|..++.....
T Consensus       167 ~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~  246 (381)
T COG3391         167 VDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTAT  246 (381)
T ss_pred             ECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEe
Confidence            99999865554 478999999977654442 1   0112234567889999997655433   36899999988876554


Q ss_pred             -EecCC-CcceeEECCCCCeEEEEEc
Q 022716          250 -IPCRA-AMNSVEWNPKYNLLAYAGD  273 (293)
Q Consensus       250 -~~~~~-~i~~~~~sp~~~~la~~~~  273 (293)
                       +.... .-..+..+|+|+.+-+...
T Consensus       247 ~~~~~~~~~~~v~~~p~g~~~yv~~~  272 (381)
T COG3391         247 DLPVGSGAPRGVAVDPAGKAAYVANS  272 (381)
T ss_pred             ccccccCCCCceeECCCCCEEEEEec
Confidence             33222 3556899999987666643

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.76  E-value=0.023  Score=49.62  Aligned_cols=216  Identities=11%  Similarity=0.121  Sum_probs=110.4

Q ss_pred             EEECCCCCeEEEEeCC-----------CcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEE
Q 022716           26 VAWNCTGTKLASGSVD-----------QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLW   94 (293)
Q Consensus        26 l~~s~~~~~l~s~~~d-----------g~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vw   94 (293)
                      ++.+|.|.-+|....+           ..|+||+....   ....+.+..  +.|..+.|+.+  +.|+....||.++++
T Consensus        34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~sG~---ll~~i~w~~--~~iv~~~wt~~--e~LvvV~~dG~v~vy  106 (410)
T PF04841_consen   34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSSGK---LLSSIPWDS--GRIVGMGWTDD--EELVVVQSDGTVRVY  106 (410)
T ss_pred             EEEcCCCceEEEEecCcccccccCCCCcEEEEECCCCC---EeEEEEECC--CCEEEEEECCC--CeEEEEEcCCEEEEE
Confidence            3445666556555444           14788876532   333445544  78999999764  456678899999999


Q ss_pred             eCCCCeeeeeeee---cCceEEE-----EEcCCCCEEEEEeCCCeEEEEEccccc-eeeee-cccceeeeeEEecCCCEE
Q 022716           95 DARSGKCSQQAEL---SGENINI-----TYKPDGTHIAVGNRDDELTILDVRKFK-PIHRR-KFGYEVNEIAWNMTGEMF  164 (293)
Q Consensus        95 d~~~~~~~~~~~~---~~~~~~~-----~~~~~~~~l~~~~~d~~i~l~d~~~~~-~~~~~-~~~~~~~~v~~~~~~~~~  164 (293)
                      |+.... ...+..   ...+..+     .+..+|  ++.-..++.+.+..--... ..+.. ..........|.+..   
T Consensus       107 ~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~---  180 (410)
T PF04841_consen  107 DLFGEF-QFSLGEEIEEEKVLECRIFAIWFYKNG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSW---  180 (410)
T ss_pred             eCCCce-eechhhhccccCcccccccccccCCCC--EEEECCCCeEEEEeCccccchhhccccCCCccccccccccc---
Confidence            986433 111110   1111111     222244  3333445555544321111 00100 000000000000000   


Q ss_pred             EEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCC
Q 022716          165 FLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTG  244 (293)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~  244 (293)
                            ..+  ..++.+....+....++.+.+.+-.....   + ....++..++.||+|+++|.-..+|.+.+.+..-.
T Consensus       181 ------~~i--~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i-~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~  248 (410)
T PF04841_consen  181 ------TVI--PLLSSDRVVEILLANGETIYIIDENSFKQ---I-DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFS  248 (410)
T ss_pred             ------ccc--eEeecCcceEEEEecCCEEEEEEcccccc---c-cCCCCeEEEEECCCCCEEEEEECCCCEEEEECccc
Confidence                  001  12333444444444455566444332211   1 22458999999999999999999999998887666


Q ss_pred             CEEEEEecC--CCcceeEECCCCC
Q 022716          245 RTVHQIPCR--AAMNSVEWNPKYN  266 (293)
Q Consensus       245 ~~~~~~~~~--~~i~~~~~sp~~~  266 (293)
                      +.+..+...  .+...+.|.-+..
T Consensus       249 ~~~~e~~~~~~~~p~~~~WCG~da  272 (410)
T PF04841_consen  249 EKLCEFDTDSKSPPKQMAWCGNDA  272 (410)
T ss_pred             ceeEEeecCcCCCCcEEEEECCCc
Confidence            655555433  4556666765443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=97.71  E-value=0.00073  Score=60.94  Aligned_cols=151  Identities=14%  Similarity=0.200  Sum_probs=106.5

Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEEccccceeeeec-ccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCC
Q 022716          113 NITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSAD  191 (293)
Q Consensus       113 ~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d  191 (293)
                      .+.|+|.| .++.| ....+.+.|.++.+.++... +...+..+.|.|..-...+.+..         ...-.+|++.-.
T Consensus        20 A~Dw~~~G-LiAyg-shslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~---------~~~lliAsaD~~   88 (1062)
T KOG1912|consen   20 AADWSPSG-LIAYG-SHSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPS---------SSQLLIASADIS   88 (1062)
T ss_pred             ccccCccc-eEEEe-cCceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCcc---------ccceeEEecccc
Confidence            56788876 34444 45688999999888877765 35678889998764322211110         123467888889


Q ss_pred             CcEEEEeCCCCEEEEEeeccCCCeeEEEEccC---C-CEEEEecCCCcEEEEEcCCCCEEEEEecCC-CcceeEECC-CC
Q 022716          192 SLVSLWDISEMLCVRTFTKLEWPVRTISFSHT---G-DYIASASEDLFIDISNVHTGRTVHQIPCRA-AMNSVEWNP-KY  265 (293)
Q Consensus       192 ~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~---~-~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~-~i~~~~~sp-~~  265 (293)
                      |.|.+||...+..+..+..+..++..++|-|.   . ..|+.-..-.++-+|+..+|.+.-++.... ...++.+.| +.
T Consensus        89 GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~  168 (1062)
T KOG1912|consen   89 GRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDS  168 (1062)
T ss_pred             CcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCc
Confidence            99999999888878888888899999998763   3 356666777899999999999987776543 445577777 44


Q ss_pred             CeEEEEEcC
Q 022716          266 NLLAYAGDD  274 (293)
Q Consensus       266 ~~la~~~~d  274 (293)
                      ..+..-|..
T Consensus       169 rh~~~l~s~  177 (1062)
T KOG1912|consen  169 RHFCVLGSK  177 (1062)
T ss_pred             ceEEEEccC
Confidence            444444443

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.70  E-value=0.00074  Score=61.57  Aligned_cols=108  Identities=17%  Similarity=0.221  Sum_probs=77.2

Q ss_pred             EEEEcCCCCCEEEEEeC----CCeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeee
Q 022716           71 QLCWDPKHADLIATASG----DKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRR  146 (293)
Q Consensus        71 ~~~~~~~~~~~l~s~~~----d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~  146 (293)
                      -.+|+|..+ +++.++.    .|.|.|| .++|++......+-+..+++|+|..-.|+.|-.-|.+.+|.....+.    
T Consensus        20 i~SWHPseP-lfAVA~fS~er~GSVtIf-adtGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~----   93 (1416)
T KOG3617|consen   20 ISSWHPSEP-LFAVASFSPERGGSVTIF-ADTGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET----   93 (1416)
T ss_pred             ccccCCCCc-eeEEEEecCCCCceEEEE-ecCCCCCcccccceehhhhccChHHHHHhhccccceeEEEecCCcee----
Confidence            346777543 4443332    5778777 45666555555556667899999988888888889999998654321    


Q ss_pred             cccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCC
Q 022716          147 KFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDIS  200 (293)
Q Consensus       147 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~  200 (293)
                                      ......+..+++-+.|+++|..++++..-|.+.+|.+.
T Consensus        94 ----------------htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   94 ----------------HTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             ----------------eeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence                            12234556677888999999999999999999999875

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.60  E-value=0.0099  Score=40.94  Aligned_cols=100  Identities=22%  Similarity=0.279  Sum_probs=63.8

Q ss_pred             EEEEEECC---CC-CeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCC
Q 022716           23 VHSVAWNC---TG-TKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS   98 (293)
Q Consensus        23 v~~l~~s~---~~-~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~   98 (293)
                      |+++++..   || +.|+.||.|..||+|+-+.    ...  +. .-.+.|..+.-...  ..++.+-.+|+|-+|+-..
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e----~~~--Ei-~e~~~v~~L~~~~~--~~F~Y~l~NGTVGvY~~~~   72 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE----IVA--EI-TETDKVTSLCSLGG--GRFAYALANGTVGVYDRSQ   72 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc----EEE--EE-ecccceEEEEEcCC--CEEEEEecCCEEEEEeCcc
Confidence            55565543   44 5799999999999997542    222  22 22456777766543  5688899999999997532


Q ss_pred             CeeeeeeeecCceEEEEEc-CC--C-CEEEEEeCCCeEE
Q 022716           99 GKCSQQAELSGENINITYK-PD--G-THIAVGNRDDELT  133 (293)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~-~~--~-~~l~~~~~d~~i~  133 (293)
                        ..-..+.+..++++++. .+  | ..|++|-++|.+-
T Consensus        73 --RlWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   73 --RLWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             --eeeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence              23334445556676543 23  2 3688888888764

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.59  E-value=0.036  Score=47.14  Aligned_cols=254  Identities=13%  Similarity=0.091  Sum_probs=110.3

Q ss_pred             EECCCCCeEEEEe-CCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeee
Q 022716           27 AWNCTGTKLASGS-VDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQA  105 (293)
Q Consensus        27 ~~s~~~~~l~s~~-~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~  105 (293)
                      +|.+||+.|+.++ .||.-.+|-++-.. ..+.++.-.... ......++|++. .++-......++-.|+++.+....+
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t-~~i~QLTdg~g~-~~~g~~~s~~~~-~~~Yv~~~~~l~~vdL~T~e~~~vy  118 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLAT-GEITQLTDGPGD-NTFGGFLSPDDR-ALYYVKNGRSLRRVDLDTLEERVVY  118 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT--EEEE---SS-B--TTT-EE-TTSS-EEEEEETTTEEEEEETTT--EEEEE
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEccc-CEEEECccCCCC-CccceEEecCCC-eEEEEECCCeEEEEECCcCcEEEEE
Confidence            5678997776544 47777776554221 233333221111 122334567654 4433445567777899888765555


Q ss_pred             eecCceE-EEEE--cCCCCEEEEEeC----------------------CCeEEEEEccccceeeeecccceeeeeEEecC
Q 022716          106 ELSGENI-NITY--KPDGTHIAVGNR----------------------DDELTILDVRKFKPIHRRKFGYEVNEIAWNMT  160 (293)
Q Consensus       106 ~~~~~~~-~~~~--~~~~~~l~~~~~----------------------d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~  160 (293)
                      +....-. ...|  ..|+..++-.-.                      ...|...|+++++......-..=+..+.++|.
T Consensus       119 ~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~  198 (386)
T PF14583_consen  119 EVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPT  198 (386)
T ss_dssp             E--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETT
T ss_pred             ECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCC
Confidence            5554433 2333  345555433211                      11233345544433222111222345556665


Q ss_pred             CCEEEEecCCCC-------E----------------------EEEEECCCCCEEEE-----ecCCCcEEEEeCCCCEEEE
Q 022716          161 GEMFFLTTGNAG-------C----------------------YCIAIDPMGRYFAV-----GSADSLVSLWDISEMLCVR  206 (293)
Q Consensus       161 ~~~~~~~~~~~~-------~----------------------~~~~~~~~~~~l~~-----gs~d~~i~iwd~~~~~~~~  206 (293)
                      .+.+++-|++++       +                      .-=.|.|+|..+.-     ++.+..|.-+|+.++....
T Consensus       199 dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~  278 (386)
T PF14583_consen  199 DPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRR  278 (386)
T ss_dssp             EEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEE
T ss_pred             CCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceE
Confidence            554444443321       1                      12246677765432     2234456666777664432


Q ss_pred             EeeccCCCeeEEEEccCCCEEEEecCCC----------------cEEEEEcCCCCEEEEEec---------CC--Cccee
Q 022716          207 TFTKLEWPVRTISFSHTGDYIASASEDL----------------FIDISNVHTGRTVHQIPC---------RA--AMNSV  259 (293)
Q Consensus       207 ~~~~~~~~v~~l~~sp~~~~l~s~s~d~----------------~i~iw~~~~~~~~~~~~~---------~~--~i~~~  259 (293)
                       +.... +....--++||+++|--+.|.                .|++++++.++......+         ..  .=...
T Consensus       279 -~~~~p-~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp  356 (386)
T PF14583_consen  279 -LMEMP-WCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHP  356 (386)
T ss_dssp             -EEEE--SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT----
T ss_pred             -EEeCC-ceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCC
Confidence             22222 344555678999887655542                567788877654321111         11  12468


Q ss_pred             EECCCCCeEEEEEcCCCCCCCCcceEEEEeeec
Q 022716          260 EWNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN  292 (293)
Q Consensus       260 ~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~~  292 (293)
                      .|+||+++++..|+-       +|.--||-+|-
T Consensus       357 ~FSPDgk~VlF~Sd~-------~G~~~vY~v~i  382 (386)
T PF14583_consen  357 SFSPDGKWVLFRSDM-------EGPPAVYLVEI  382 (386)
T ss_dssp             EE-TTSSEEEEEE-T-------TSS-EEEEEE-
T ss_pred             ccCCCCCEEEEECCC-------CCCccEEEEeC
Confidence            999999999999864       45667776663

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.46  E-value=0.0003  Score=54.37  Aligned_cols=139  Identities=17%  Similarity=0.136  Sum_probs=85.6

Q ss_pred             EEEEeCCCeEEEEeCCCCeee--ee-eeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEe
Q 022716           82 IATASGDKTVRLWDARSGKCS--QQ-AELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWN  158 (293)
Q Consensus        82 l~s~~~d~~i~vwd~~~~~~~--~~-~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~  158 (293)
                      +..-+.|+.|+-++++..+..  .. +...+    ...-.-+..+++|+.+|.+.+|............           
T Consensus        33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~----~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~-----------   97 (238)
T KOG2444|consen   33 LRATSADGLVRERKVRKHKESCRSERFIDEG----QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRV-----------   97 (238)
T ss_pred             hccccCCcccccchhhhhhhhhhhhhhhhcc----eeecccCceEEeecccceEEEecCCccchHHHhh-----------
Confidence            334466777777766543211  11 11111    1111234679999999999999865322111110           


Q ss_pred             cCCCEEEEecCCCCEE-EEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccC-CCeeEEEEccCCCEEEEe--cCCC
Q 022716          159 MTGEMFFLTTGNAGCY-CIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLE-WPVRTISFSHTGDYIASA--SEDL  234 (293)
Q Consensus       159 ~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~-~~v~~l~~sp~~~~l~s~--s~d~  234 (293)
                              ......+. -+....++.+..++..||.|+.|+++..+.+.....|. .++.....+..++.++++  |.|.
T Consensus        98 --------~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~  169 (238)
T KOG2444|consen   98 --------CSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDR  169 (238)
T ss_pred             --------hcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccch
Confidence                    00111111 12223345688999999999999999887776666666 577777777778888888  8888


Q ss_pred             cEEEEEcCC
Q 022716          235 FIDISNVHT  243 (293)
Q Consensus       235 ~i~iw~~~~  243 (293)
                      .++.|++..
T Consensus       170 ~~k~W~ve~  178 (238)
T KOG2444|consen  170 VLKKWNVEK  178 (238)
T ss_pred             hhhhcchhh
Confidence            888888864

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.36  E-value=0.07  Score=45.03  Aligned_cols=166  Identities=17%  Similarity=0.177  Sum_probs=97.2

Q ss_pred             CeEEEEeCCCC-----e--eeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccc-eeeeecccceeeeeEEecC
Q 022716           89 KTVRLWDARSG-----K--CSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFK-PIHRRKFGYEVNEIAWNMT  160 (293)
Q Consensus        89 ~~i~vwd~~~~-----~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~-~~~~~~~~~~~~~v~~~~~  160 (293)
                      |.+.++++...     +  .+...+..+.+.+++-- ++ .++++. .+++.++++...+ ......+.           
T Consensus        62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~-----------  127 (321)
T PF03178_consen   62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYD-----------  127 (321)
T ss_dssp             EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE------------
T ss_pred             cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhheec-----------
Confidence            88999998874     2  23345567777777644 33 454444 5899999987765 22221111           


Q ss_pred             CCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCC-CEEEEEeec--cCCCeeEEEEccCCCEEEEecCCCcEE
Q 022716          161 GEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISE-MLCVRTFTK--LEWPVRTISFSHTGDYIASASEDLFID  237 (293)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~-~~~~~~~~~--~~~~v~~l~~sp~~~~l~s~s~d~~i~  237 (293)
                              ....+.++.  ..++++++|+....+.++..+. ...+..+..  ....+.++.|-+++..++.+..+|.+.
T Consensus       128 --------~~~~i~sl~--~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~  197 (321)
T PF03178_consen  128 --------SPFYITSLS--VFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLF  197 (321)
T ss_dssp             --------BSSSEEEEE--EETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEE
T ss_pred             --------ceEEEEEEe--ccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEE
Confidence                    111233443  3467999999999999885432 333333333  234588888887777899999999998


Q ss_pred             EEEcCC-------CC-EE---EEEecCCCccee---EECCC--CC------eEEEEEcCCCCC
Q 022716          238 ISNVHT-------GR-TV---HQIPCRAAMNSV---EWNPK--YN------LLAYAGDDKNKY  278 (293)
Q Consensus       238 iw~~~~-------~~-~~---~~~~~~~~i~~~---~~sp~--~~------~la~~~~d~~~~  278 (293)
                      ++....       +. .+   ..+.....|+++   ...|.  ..      .+..++.+|.+.
T Consensus       198 ~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig  260 (321)
T PF03178_consen  198 VLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIG  260 (321)
T ss_dssp             EEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EE
T ss_pred             EEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEE
Confidence            887653       22 22   344556677777   55562  22      477787776554

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.36  E-value=0.0041  Score=54.02  Aligned_cols=136  Identities=18%  Similarity=0.251  Sum_probs=89.6

Q ss_pred             EEEEEeCCCeEEEEeCCCCeeeeeeeecCceEEEEEcCCCC-------EEEEEeCCCeEEEEEccccceeeeecccceee
Q 022716           81 LIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGT-------HIAVGNRDDELTILDVRKFKPIHRRKFGYEVN  153 (293)
Q Consensus        81 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~-------~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~  153 (293)
                      +|.++.....++-.|+..|+.+..+.++..+.-+.+.|+.+       .-++|-.++.+.-||+|-...          +
T Consensus       348 il~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~----------~  417 (644)
T KOG2395|consen  348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGK----------N  417 (644)
T ss_pred             EeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCc----------c
Confidence            45556666677888999999988888777755566777654       345677888999999873211          1


Q ss_pred             eeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEE-eeccCCCeeEEEEccCCCEEEEecC
Q 022716          154 EIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRT-FTKLEWPVRTISFSHTGDYIASASE  232 (293)
Q Consensus       154 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~-~~~~~~~v~~l~~sp~~~~l~s~s~  232 (293)
                      -+.|....+..    ......|.+-. ...++|+||.+|.|++||- .+...++ +.+...+|..|..+.+|++++.-..
T Consensus       418 kl~~~q~kqy~----~k~nFsc~aTT-~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~  491 (644)
T KOG2395|consen  418 KLAVVQSKQYS----TKNNFSCFATT-ESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCK  491 (644)
T ss_pred             eeeeeeccccc----cccccceeeec-CCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEecc
Confidence            12232221110    01112344433 4557899999999999996 5544443 5677889999999999998755433

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.36  E-value=0.00068  Score=56.51  Aligned_cols=91  Identities=19%  Similarity=0.240  Sum_probs=74.0

Q ss_pred             EEEEeCCCCEEEEEeeccCCCeeEEEEccCCC-EEEEecCCCcEEEEEcCCCCEEEEEecCCCcceeEECCCCCeEEEEE
Q 022716          194 VSLWDISEMLCVRTFTKLEWPVRTISFSHTGD-YIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAG  272 (293)
Q Consensus       194 i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~-~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~  272 (293)
                      ++..+..++....-+..+...|..++|||..+ ++..++.+..|+|.|+++...+..+.....+.+++|.-+....++||
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaG  254 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAG  254 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEe
Confidence            56666555555555556677899999999887 78899999999999999988888887788999999999998999998


Q ss_pred             cCCCCCCCCcceEEEEeee
Q 022716          273 DDKNKYQADEGVFRIYGFE  291 (293)
Q Consensus       273 ~d~~~~~~~~~~~~~~~~~  291 (293)
                      ..       .|.+=||++-
T Consensus       255 l~-------nG~VlvyD~R  266 (463)
T KOG1645|consen  255 LQ-------NGMVLVYDMR  266 (463)
T ss_pred             cc-------CceEEEEEcc
Confidence            75       3666777764

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.35  E-value=0.072  Score=44.96  Aligned_cols=194  Identities=14%  Similarity=0.066  Sum_probs=103.2

Q ss_pred             EEEEEECCC----CCeEEEEeC----------CCcEEEeecCCCCC--CceeEEEeeCCcCCeeEEEEcCCCCCEEEEEe
Q 022716           23 VHSVAWNCT----GTKLASGSV----------DQTARVWHIEPHGH--GKVKDIELRGHADSVDQLCWDPKHADLIATAS   86 (293)
Q Consensus        23 v~~l~~s~~----~~~l~s~~~----------dg~v~iw~~~~~~~--~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~   86 (293)
                      +..+.|..+    -.+|+.|..          .|.|.++++.....  .....+.-....++|++++-.  ++.+++  +
T Consensus        29 ~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~--~~~lv~--~  104 (321)
T PF03178_consen   29 LCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF--NGRLVV--A  104 (321)
T ss_dssp             EEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE--TTEEEE--E
T ss_pred             EEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh--CCEEEE--e
Confidence            344455543    356766643          28899999976311  122222233456789998765  233443  3


Q ss_pred             CCCeEEEEeCCCCe-eeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEcccc-ceeeeecccceeeeeEEecCCCEE
Q 022716           87 GDKTVRLWDARSGK-CSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKF-KPIHRRKFGYEVNEIAWNMTGEMF  164 (293)
Q Consensus        87 ~d~~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~-~~~~~~~~~~~~~~v~~~~~~~~~  164 (293)
                      .+..+.+|++...+ .......+...........+.++++|.....+.++..+.. ..+..         ++        
T Consensus       105 ~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~---------va--------  167 (321)
T PF03178_consen  105 VGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDEENNKLIL---------VA--------  167 (321)
T ss_dssp             ETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEETTTE-EEE---------EE--------
T ss_pred             ecCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEccCCEEEE---------EE--------
Confidence            35889999998777 5554444443333333333568888887777777643321 10110         00        


Q ss_pred             EEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCC-------CE-EEEEe--eccCCCeeEE---EEccC--C-----
Q 022716          165 FLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISE-------ML-CVRTF--TKLEWPVRTI---SFSHT--G-----  224 (293)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~-------~~-~~~~~--~~~~~~v~~l---~~sp~--~-----  224 (293)
                       -......++++.+-++++.+++++.+|.+.++....       +. .+...  ......|+++   ++.|.  +     
T Consensus       168 -~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~  246 (321)
T PF03178_consen  168 -RDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPN  246 (321)
T ss_dssp             -EESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTE
T ss_pred             -ecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccc
Confidence             011122355666665557999999999999997652       11 12211  1234567777   55552  2     


Q ss_pred             -CEEEEecCCCcEEE
Q 022716          225 -DYIASASEDLFIDI  238 (293)
Q Consensus       225 -~~l~s~s~d~~i~i  238 (293)
                       ..++.++.+|.|..
T Consensus       247 ~~~i~~~T~~G~Ig~  261 (321)
T PF03178_consen  247 RPQILYGTVDGSIGV  261 (321)
T ss_dssp             EEEEEEEETTS-EEE
T ss_pred             cceEEEEecCCEEEE
Confidence             24777788888763

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.33  E-value=0.054  Score=43.14  Aligned_cols=113  Identities=19%  Similarity=0.089  Sum_probs=77.1

Q ss_pred             CCCCCEEEEEeCCCeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeee
Q 022716           76 PKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEI  155 (293)
Q Consensus        76 ~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v  155 (293)
                      ++...+++.|+..+.+.--|.++|.............+-+.- -|.+++.|...+.+.+.+.++.........       
T Consensus        20 ~dskT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~-------   91 (354)
T KOG4649|consen   20 NDSKTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVI-------   91 (354)
T ss_pred             cCCceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeee-------
Confidence            334567788888888888888888766554444444332222 367899999999999999887654332111       


Q ss_pred             EEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEee
Q 022716          156 AWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT  209 (293)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~  209 (293)
                                  ...-. .....++++..+-.|+.|++.+..|.++..++.+.+
T Consensus        92 ------------~~~vk-~~a~~d~~~glIycgshd~~~yalD~~~~~cVyksk  132 (354)
T KOG4649|consen   92 ------------LETVK-VRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSK  132 (354)
T ss_pred             ------------hhhhc-cceEEcCCCceEEEecCCCcEEEecccccceEEecc
Confidence                        11111 123457889999999999999999999988887643

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.30  E-value=0.067  Score=43.45  Aligned_cols=202  Identities=16%  Similarity=0.269  Sum_probs=108.4

Q ss_pred             eCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeeeecC--ceEEEEEcCCCCEEEEEeCCCeEEEEEcccc
Q 022716           63 RGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSG--ENINITYKPDGTHIAVGNRDDELTILDVRKF  140 (293)
Q Consensus        63 ~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~  140 (293)
                      .+-...+.++.|+|+. +.|++..+.....|+-...|+.+..+...+  .+-.+.+.-++.++++--.+.++.++.+...
T Consensus        82 ~g~~~nvS~LTynp~~-rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~  160 (316)
T COG3204          82 LGETANVSSLTYNPDT-RTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD  160 (316)
T ss_pred             ccccccccceeeCCCc-ceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence            3445559999999985 456667777777787778888887776543  3346778778888877777888887765443


Q ss_pred             ceeee-----ecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEE---EEEeec--
Q 022716          141 KPIHR-----RKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLC---VRTFTK--  210 (293)
Q Consensus       141 ~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~---~~~~~~--  210 (293)
                      .....     ..++...+               .+.+.--+|++|.+..|..+=+.+-+.||.......   +.....  
T Consensus       161 t~~~~~~~~~i~L~~~~k---------------~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~  225 (316)
T COG3204         161 TTVISAKVQKIPLGTTNK---------------KNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPT  225 (316)
T ss_pred             ccEEeccceEEeccccCC---------------CCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcc
Confidence            21111     00100000               011122345555555444444444455554432210   000000  


Q ss_pred             -----cCCCeeEEEEccC-CCEEEEecCCCcEEEEEcCCCCEEEEEecCCCcceeEEC-CCCCeEEEEEcCCCCCCCCc
Q 022716          211 -----LEWPVRTISFSHT-GDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWN-PKYNLLAYAGDDKNKYQADE  282 (293)
Q Consensus       211 -----~~~~v~~l~~sp~-~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~i~~~~~s-p~~~~la~~~~d~~~~~~~~  282 (293)
                           .-..|.++.|++. +.+|+-+.+++.+--.|. +|..+..+.....-+.+.-. |.-.-+| ..+++++|+..|
T Consensus       226 ~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~-~G~~~~~lsL~~g~~gL~~dipqaEGia-mDd~g~lYIvSE  302 (316)
T COG3204         226 ADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDL-SGEVIELLSLTKGNHGLSSDIPQAEGIA-MDDDGNLYIVSE  302 (316)
T ss_pred             cccceEeeccccceecCCCCcEEEEecCCceEEEEec-CCCeeeeEEeccCCCCCcccCCCcceeE-ECCCCCEEEEec
Confidence                 1235777888864 566777778887777766 34445444433333333222 2222222 335566666554

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.25  E-value=0.0029  Score=54.13  Aligned_cols=82  Identities=22%  Similarity=0.302  Sum_probs=56.7

Q ss_pred             CCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEecCC----------------
Q 022716          191 DSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRA----------------  254 (293)
Q Consensus       191 d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~----------------  254 (293)
                      .+.+.+||+++++... +......+....|||+|+.+|-.. ++.|++.+..++.. .++...+                
T Consensus        22 ~~~y~i~d~~~~~~~~-l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~-~~lT~dg~~~i~nG~~dwvyeEE   98 (353)
T PF00930_consen   22 KGDYYIYDIETGEITP-LTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQE-TQLTTDGEPGIYNGVPDWVYEEE   98 (353)
T ss_dssp             EEEEEEEETTTTEEEE-SS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEE-EESES--TTTEEESB--HHHHHH
T ss_pred             ceeEEEEecCCCceEE-CcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCe-EEeccccceeEEcCccceecccc
Confidence            3568899999986543 333356789999999999998875 46799998877743 3332211                


Q ss_pred             ---CcceeEECCCCCeEEEEEcCC
Q 022716          255 ---AMNSVEWNPKYNLLAYAGDDK  275 (293)
Q Consensus       255 ---~i~~~~~sp~~~~la~~~~d~  275 (293)
                         .-..+-||||+.+||+...|.
T Consensus        99 v~~~~~~~~WSpd~~~la~~~~d~  122 (353)
T PF00930_consen   99 VFDRRSAVWWSPDSKYLAFLRFDE  122 (353)
T ss_dssp             TSSSSBSEEE-TTSSEEEEEEEE-
T ss_pred             ccccccceEECCCCCEEEEEEECC
Confidence               225688999999999998764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.24  E-value=0.0022  Score=56.63  Aligned_cols=90  Identities=23%  Similarity=0.424  Sum_probs=66.1

Q ss_pred             CCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeeeecCc-eE-EEEEcCCCCEEEEEeCCCeEEEEEccccceee
Q 022716           67 DSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGE-NI-NITYKPDGTHIAVGNRDDELTILDVRKFKPIH  144 (293)
Q Consensus        67 ~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~-~~-~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~  144 (293)
                      ..|..+.|+|. -++++.+.++|.+.+..+. .+.+..+..++. +. +++|.|||+.+++|-.||+|++.|..++..+.
T Consensus        21 ~~i~~~ewnP~-~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~   98 (665)
T KOG4640|consen   21 INIKRIEWNPK-MDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV   98 (665)
T ss_pred             cceEEEEEcCc-cchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence            34778899997 4799999999988887766 444455553333 33 79999999999999999999999998877666


Q ss_pred             e--ecccceeeeeEEe
Q 022716          145 R--RKFGYEVNEIAWN  158 (293)
Q Consensus       145 ~--~~~~~~~~~v~~~  158 (293)
                      .  .....++..+-|+
T Consensus        99 ~~~~s~e~~is~~~w~  114 (665)
T KOG4640|consen   99 SFLFSVETDISKGIWD  114 (665)
T ss_pred             ccccccccchheeecc
Confidence            5  2233344444454

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.24  E-value=0.032  Score=38.49  Aligned_cols=60  Identities=10%  Similarity=0.133  Sum_probs=45.8

Q ss_pred             cCCCCCEEEEEeCCCeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 022716           75 DPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDV  137 (293)
Q Consensus        75 ~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~  137 (293)
                      ..++.+.|+.|+.|..||+|+-  .+.+..+...+.++++..... ..++.+...|+|-+|+-
T Consensus        11 d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~   70 (111)
T PF14783_consen   11 DGDGENELLVGSDDFEIRVFKG--DEIVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDR   70 (111)
T ss_pred             CCCCcceEEEecCCcEEEEEeC--CcEEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeC
Confidence            3344567889999999999974  356666666777777776555 57999999999999984

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.21  E-value=0.0001  Score=64.74  Aligned_cols=197  Identities=18%  Similarity=0.209  Sum_probs=114.9

Q ss_pred             CeeEEEEcCC-CCCEEEEEeCCCeEEEEeCCCCeeeee---eeecCceEEEEEcCC-CCEEEEEe----CCCeEEEEEcc
Q 022716           68 SVDQLCWDPK-HADLIATASGDKTVRLWDARSGKCSQQ---AELSGENINITYKPD-GTHIAVGN----RDDELTILDVR  138 (293)
Q Consensus        68 ~i~~~~~~~~-~~~~l~s~~~d~~i~vwd~~~~~~~~~---~~~~~~~~~~~~~~~-~~~l~~~~----~d~~i~l~d~~  138 (293)
                      .+.++++.-. +.-+++.|..+|.|.+-..+...-...   -.......+++|.+- ...|++|-    .|..+.+||+.
T Consensus        58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~  137 (783)
T KOG1008|consen   58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN  137 (783)
T ss_pred             CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence            3445544322 224677778889998887765432211   112234556888764 44555553    35678999998


Q ss_pred             cc--ceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCee
Q 022716          139 KF--KPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVR  216 (293)
Q Consensus       139 ~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~  216 (293)
                      +.  .|.....+.                 ++...+..++++..+.+.+.+|.....+.++|++....... .-....+.
T Consensus       138 s~ltvPke~~~fs-----------------~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~-svnTk~vq  199 (783)
T KOG1008|consen  138 SLLTVPKESPLFS-----------------SSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVS-SVNTKYVQ  199 (783)
T ss_pred             cccCCCccccccc-----------------cccccCccccccccCcchhhcccccchhhhhhhhhhhhhhh-hhhhhhcc
Confidence            75  333222211                 11122233667778889999999999999999985422111 11223566


Q ss_pred             EEEEcc-CCCEEEEecCCCcEEEEEc-CCCCE-EEEEec-C----CCcceeEECCCC-CeEEEEEcCCCCCCCCcceEEE
Q 022716          217 TISFSH-TGDYIASASEDLFIDISNV-HTGRT-VHQIPC-R----AAMNSVEWNPKY-NLLAYAGDDKNKYQADEGVFRI  287 (293)
Q Consensus       217 ~l~~sp-~~~~l~s~s~d~~i~iw~~-~~~~~-~~~~~~-~----~~i~~~~~sp~~-~~la~~~~d~~~~~~~~~~~~~  287 (293)
                      .+...| .+.|+++-. |+.|.+||. ..-+. +..+.. .    ..+..++|.|.- .++|+...|       .+++|.
T Consensus       200 G~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~Rd-------S~tIrl  271 (783)
T KOG1008|consen  200 GITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRD-------SITIRL  271 (783)
T ss_pred             cceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccC-------cceEEE
Confidence            677788 677887766 999999994 22221 111111 1    137889999965 456666544       355555


Q ss_pred             Eee
Q 022716          288 YGF  290 (293)
Q Consensus       288 ~~~  290 (293)
                      |.+
T Consensus       272 ydi  274 (783)
T KOG1008|consen  272 YDI  274 (783)
T ss_pred             ecc
Confidence            543

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.20  E-value=0.016  Score=52.05  Aligned_cols=129  Identities=11%  Similarity=0.150  Sum_probs=86.7

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCeeeeeee--ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeE
Q 022716           79 ADLIATASGDKTVRLWDARSGKCSQQAE--LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIA  156 (293)
Q Consensus        79 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~  156 (293)
                      .++++-|+.-|.+.+|+-..+.....-.  .++....+..+++..+++.|+..|.|.++.++...+......        
T Consensus        45 ~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~--------  116 (726)
T KOG3621|consen   45 EEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYV--------  116 (726)
T ss_pred             CceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceee--------
Confidence            4688889999999999876654332222  233344566788888999999999999998776433221110        


Q ss_pred             EecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCC----CEEEEEeeccCCCeeEEEEc
Q 022716          157 WNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISE----MLCVRTFTKLEWPVRTISFS  221 (293)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~----~~~~~~~~~~~~~v~~l~~s  221 (293)
                       .+.     -..+...++|++|++++..+.+|...|+|.+-.+..    ....+.+...+..|-.+++.
T Consensus       117 -t~~-----d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~  179 (726)
T KOG3621|consen  117 -TPC-----DKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL  179 (726)
T ss_pred             -ccc-----cccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence             000     011455789999999999999999999999987765    11223444556677777663

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.13  E-value=0.0016  Score=58.18  Aligned_cols=101  Identities=13%  Similarity=0.107  Sum_probs=74.9

Q ss_pred             EEEECCCCCEEEEecCCCcEEEEeCCCCEEEE-EeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEE---EEE
Q 022716          175 CIAIDPMGRYFAVGSADSLVSLWDISEMLCVR-TFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTV---HQI  250 (293)
Q Consensus       175 ~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~-~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~---~~~  250 (293)
                      --+++..+.+++.|++-|.+++|+-..+.... ...+-...+..++.|++..++|.|+..|.|.++-+..+...   ..-
T Consensus        38 lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t  117 (726)
T KOG3621|consen   38 LTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVT  117 (726)
T ss_pred             EEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeec
Confidence            34556778999999999999999976654332 22223456777888999999999999999999988764322   111


Q ss_pred             ----ecCCCcceeEECCCCCeEEEEEcCC
Q 022716          251 ----PCRAAMNSVEWNPKYNLLAYAGDDK  275 (293)
Q Consensus       251 ----~~~~~i~~~~~sp~~~~la~~~~d~  275 (293)
                          .+...|++++|++++..+-+|...|
T Consensus       118 ~~d~~~~~rVTal~Ws~~~~k~ysGD~~G  146 (726)
T KOG3621|consen  118 PCDKSHKCRVTALEWSKNGMKLYSGDSQG  146 (726)
T ss_pred             cccccCCceEEEEEecccccEEeecCCCc
Confidence                1356799999999999998887654

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.08  E-value=0.21  Score=44.92  Aligned_cols=237  Identities=14%  Similarity=0.098  Sum_probs=117.0

Q ss_pred             CeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCC---ee-EEEEcCCCCCEEEEEe---------CCCeEEEEeCCCC
Q 022716           33 TKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADS---VD-QLCWDPKHADLIATAS---------GDKTVRLWDARSG   99 (293)
Q Consensus        33 ~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~---i~-~~~~~~~~~~~l~s~~---------~d~~i~vwd~~~~   99 (293)
                      ..++.++.||.|..+|.++..  .........+...   +. ...+.  + .+++.++         .++.+.-.|..++
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~--~~W~~~~~~~~~~~~~i~ssP~v~--~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG  185 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGK--QVWKFGNNDQVPPGYTMTGAPTIV--K-KLVIIGSSGAEFFACGVRGALRAYDVETG  185 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCC--EeeeecCCCCcCcceEecCCCEEE--C-CEEEEeccccccccCCCCcEEEEEECCCC
Confidence            567778888999988876431  2222222221000   11 11111  1 3444443         3678888899999


Q ss_pred             eeeeeeeecCc-e---------------------EEEEEcCCCCEEEEEeCCC------------------eEEEEEccc
Q 022716          100 KCSQQAELSGE-N---------------------INITYKPDGTHIAVGNRDD------------------ELTILDVRK  139 (293)
Q Consensus       100 ~~~~~~~~~~~-~---------------------~~~~~~~~~~~l~~~~~d~------------------~i~l~d~~~  139 (293)
                      +.+-..+.... .                     ...++.+.+..++.++.++                  .+.-+|+++
T Consensus       186 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~t  265 (488)
T cd00216         186 KLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADT  265 (488)
T ss_pred             ceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCC
Confidence            87665543211 0                     0234455566777777665                  577777766


Q ss_pred             cceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEE-CCCCC---EEEEecCCCcEEEEeCCCCEEEEEeeccCCCe
Q 022716          140 FKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAI-DPMGR---YFAVGSADSLVSLWDISEMLCVRTFTKLEWPV  215 (293)
Q Consensus       140 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v  215 (293)
                      .+..-.......   -.|+       ......++. ... .-++.   .++.++.+|.+...|.++++.+=.....   .
T Consensus       266 G~~~W~~~~~~~---~~~~-------~~~~s~p~~-~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~  331 (488)
T cd00216         266 GKVKWFYQTTPH---DLWD-------YDGPNQPSL-ADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---E  331 (488)
T ss_pred             CCEEEEeeCCCC---CCcc-------cccCCCCeE-EeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---c
Confidence            554322211000   0000       000000000 000 11232   6788889999999999999876543211   1


Q ss_pred             eEEEEccCCCEEEEe------------------cCCCcEEEEEcCCCCEEEEEecC---------CCcceeEECCCCCeE
Q 022716          216 RTISFSHTGDYIASA------------------SEDLFIDISNVHTGRTVHQIPCR---------AAMNSVEWNPKYNLL  268 (293)
Q Consensus       216 ~~l~~sp~~~~l~s~------------------s~d~~i~iw~~~~~~~~~~~~~~---------~~i~~~~~sp~~~~l  268 (293)
                      ..++.+|  ..+..+                  ..++.+.-.|..+|+.+-+....         .+...-.-...+..+
T Consensus       332 ~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v  409 (488)
T cd00216         332 QPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLV  409 (488)
T ss_pred             cccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeE
Confidence            1233334  222221                  23577888888888876555432         111100011244567


Q ss_pred             EEEEcCCCCCCCCcceE-EEEee
Q 022716          269 AYAGDDKNKYQADEGVF-RIYGF  290 (293)
Q Consensus       269 a~~~~d~~~~~~~~~~~-~~~~~  290 (293)
                      ..++.|+.++-.+..+- .+|.+
T Consensus       410 ~~g~~dG~l~ald~~tG~~lW~~  432 (488)
T cd00216         410 FAGAADGYFRAFDATTGKELWKF  432 (488)
T ss_pred             EEECCCCeEEEEECCCCceeeEE
Confidence            77777766665444332 34443

The alignment model contains an 8-bladed beta-propeller.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.05  E-value=0.15  Score=42.76  Aligned_cols=59  Identities=22%  Similarity=0.315  Sum_probs=43.5

Q ss_pred             cEEEEeCCCCEEEEEeeccCCCeeEEEEccCCC-EEEEe-cCCCcEEEEEcCCCCEEEEEec
Q 022716          193 LVSLWDISEMLCVRTFTKLEWPVRTISFSHTGD-YIASA-SEDLFIDISNVHTGRTVHQIPC  252 (293)
Q Consensus       193 ~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~-~l~s~-s~d~~i~iw~~~~~~~~~~~~~  252 (293)
                      .|.++|+++++++..+.- +.++.+|..+.+.+ +|++. ..++.+.++|..+|+.++.+..
T Consensus       270 eVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~  330 (342)
T PF06433_consen  270 EVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ  330 (342)
T ss_dssp             EEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred             EEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence            577789999998887742 34688999998765 55444 5689999999999999988764

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.04  E-value=0.15  Score=44.58  Aligned_cols=172  Identities=13%  Similarity=0.130  Sum_probs=84.7

Q ss_pred             eEEEEeCCCCeeeeeeeec-CceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEec
Q 022716           90 TVRLWDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTT  168 (293)
Q Consensus        90 ~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  168 (293)
                      .|++|+.. |+.+..+... +..+.+.|+.+ ..|++...||.++++|+....   ....+.++....           .
T Consensus        62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G~~---~fsl~~~i~~~~-----------v  125 (410)
T PF04841_consen   62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLFGEF---QFSLGEEIEEEK-----------V  125 (410)
T ss_pred             EEEEECCC-CCEeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCCCce---eechhhhccccC-----------c
Confidence            47777653 3444444432 66788999875 566677799999999986433   222222221100           0


Q ss_pred             CCCCEEEEEECCCCCEEEEecCCCcEEEEeC-CCCEEEEEe---ec-------cCCCeeEEEEccCCCEEEEecCCCcEE
Q 022716          169 GNAGCYCIAIDPMGRYFAVGSADSLVSLWDI-SEMLCVRTF---TK-------LEWPVRTISFSHTGDYIASASEDLFID  237 (293)
Q Consensus       169 ~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~-~~~~~~~~~---~~-------~~~~v~~l~~sp~~~~l~s~s~d~~i~  237 (293)
                      .+..+....+..+|-.++  +.++.+.+.+- ......+.+   ..       +........++.+....+....+..+.
T Consensus       126 ~e~~i~~~~~~~~GivvL--t~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~  203 (410)
T PF04841_consen  126 LECRIFAIWFYKNGIVVL--TGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIY  203 (410)
T ss_pred             ccccccccccCCCCEEEE--CCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEE
Confidence            000111111112232222  22333333321 111010111   00       000000123444555555555555555


Q ss_pred             EEEcCCCCEEEEEecCCCcceeEECCCCCeEEEEEcCCCCCCCCc
Q 022716          238 ISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADE  282 (293)
Q Consensus       238 iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~  282 (293)
                      +-+-...+   ++...+++..++.||+++++|.-..++++|+...
T Consensus       204 ~i~~~~~~---~i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ss  245 (410)
T PF04841_consen  204 IIDENSFK---QIDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSS  245 (410)
T ss_pred             EEEccccc---cccCCCCeEEEEECCCCCEEEEEECCCCEEEEEC
Confidence            44333221   1334568999999999999999999988887554

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.01  E-value=0.12  Score=47.19  Aligned_cols=231  Identities=16%  Similarity=0.165  Sum_probs=113.2

Q ss_pred             CCCCCeEEEEeCCC------cEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCC------CeEEEEeC
Q 022716           29 NCTGTKLASGSVDQ------TARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD------KTVRLWDA   96 (293)
Q Consensus        29 s~~~~~l~s~~~dg------~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d------~~i~vwd~   96 (293)
                      +..+..++.||.++      .++.+|...+.....  ..++ +...-.+++...  +.++++||.|      ..+-.||.
T Consensus       282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~--a~m~-~~r~~~~~~~~~--~~lYv~GG~~~~~~~l~~ve~YD~  356 (571)
T KOG4441|consen  282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSL--APMP-SPRCRVGVAVLN--GKLYVVGGYDSGSDRLSSVERYDP  356 (571)
T ss_pred             CCCCeEEEECCCCCCCcccceeEEecCCcCcEeec--CCCC-cccccccEEEEC--CEEEEEccccCCCcccceEEEecC
Confidence            34456677888874      667777654321111  1111 122223334432  3678888888      34667787


Q ss_pred             CCCeeeeeeeecCceEEEE-EcCCCCEEEEEeCCCe-----EEEEEccccceeeeecccceeeeeEEecCCCEEEEecCC
Q 022716           97 RSGKCSQQAELSGENINIT-YKPDGTHIAVGNRDDE-----LTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGN  170 (293)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~d~~-----i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  170 (293)
                      +..+..........-.... ..-+|...++|+.||.     +-.||.++.+               |.+-..+...    
T Consensus       357 ~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~---------------W~~va~m~~~----  417 (571)
T KOG4441|consen  357 RTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNK---------------WTPVAPMLTR----  417 (571)
T ss_pred             CCCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCc---------------ccccCCCCcc----
Confidence            7766433222221111111 1235778889988864     3445544332               2222111110    


Q ss_pred             CCEEEEEECCCCCEEEEecCCC------cEEEEeCCCCEE--EEEeeccCCCeeEEEEccCCCEEEEecCCCc-----EE
Q 022716          171 AGCYCIAIDPMGRYFAVGSADS------LVSLWDISEMLC--VRTFTKLEWPVRTISFSHTGDYIASASEDLF-----ID  237 (293)
Q Consensus       171 ~~~~~~~~~~~~~~l~~gs~d~------~i~iwd~~~~~~--~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~-----i~  237 (293)
                       ....-...-++.+.++|+.++      ++..||..+..-  +..+..-..... ++ .-++...+.|+.|+.     |.
T Consensus       418 -r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a-~~~~~iYvvGG~~~~~~~~~VE  494 (571)
T KOG4441|consen  418 -RSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VA-VLNGKIYVVGGFDGTSALSSVE  494 (571)
T ss_pred             -eeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccce-EE-EECCEEEEECCccCCCccceEE
Confidence             000111223677788887554      567788765432  222222221111 22 236777788887763     67


Q ss_pred             EEEcCCCCEEEEEecCCCcceeEEC-CCCCeEEEEEcCCCCCCCCcceEEEEe
Q 022716          238 ISNVHTGRTVHQIPCRAAMNSVEWN-PKYNLLAYAGDDKNKYQADEGVFRIYG  289 (293)
Q Consensus       238 iw~~~~~~~~~~~~~~~~i~~~~~s-p~~~~la~~~~d~~~~~~~~~~~~~~~  289 (293)
                      .+|..+.+-...-+...+...+... -++..++.||.|++.+   ..++..|+
T Consensus       495 ~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG~~~~~~---l~~ve~yd  544 (571)
T KOG4441|consen  495 RYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGGFDGNNN---LNTVECYD  544 (571)
T ss_pred             EEcCCCCceeEcccCccccccccEEEECCEEEEEecccCccc---cceeEEcC
Confidence            7888775533221111122222222 2567889999887555   23444444

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=96.88  E-value=0.0039  Score=57.11  Aligned_cols=108  Identities=13%  Similarity=0.176  Sum_probs=81.3

Q ss_pred             EEEEcCCCCEEEEEe----CCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEe
Q 022716          113 NITYKPDGTHIAVGN----RDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVG  188 (293)
Q Consensus       113 ~~~~~~~~~~l~~~~----~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g  188 (293)
                      -..|+|....+++++    ..|.+.++- .+++|.+....+                     .+..+++|||..-.|+.|
T Consensus        20 i~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P---------------------~hatSLCWHpe~~vLa~g   77 (1416)
T KOG3617|consen   20 ISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYP---------------------VHATSLCWHPEEFVLAQG   77 (1416)
T ss_pred             ccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccccc---------------------eehhhhccChHHHHHhhc
Confidence            356777777777765    456777763 233333322222                     123467888988888999


Q ss_pred             cCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcC
Q 022716          189 SADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVH  242 (293)
Q Consensus       189 s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~  242 (293)
                      =.-|.+.+|.....+.......|..+|..+.|||+|..|+|+..-|.+.+|...
T Consensus        78 we~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   78 WEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             cccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            889999999988877666677899999999999999999999999999999765

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=96.87  E-value=0.18  Score=40.72  Aligned_cols=205  Identities=13%  Similarity=0.164  Sum_probs=100.5

Q ss_pred             eeecCccccEEEEEECCCCCeE-EEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEE
Q 022716           14 REYTGHKKKVHSVAWNCTGTKL-ASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (293)
Q Consensus        14 ~~~~~h~~~v~~l~~s~~~~~l-~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~   92 (293)
                      +.+.+-...+..|+|+|+.+.| +.....+.|...+.+  + .....+.+.+.. -.-.+++... ..++++--.++.+.
T Consensus        15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~--G-~vlr~i~l~g~~-D~EgI~y~g~-~~~vl~~Er~~~L~   89 (248)
T PF06977_consen   15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD--G-KVLRRIPLDGFG-DYEGITYLGN-GRYVLSEERDQRLY   89 (248)
T ss_dssp             EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT-----EEEEEE-SS-S-SEEEEEE-ST-TEEEEEETTTTEEE
T ss_pred             eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC--C-CEEEEEeCCCCC-CceeEEEECC-CEEEEEEcCCCcEE
Confidence            4555666779999999987655 455556776666653  1 234445555532 3456676543 34554443488888


Q ss_pred             EEeCCCCe----e--eeeeee--c----CceEEEEEcCCCCEEEEEeCCCeEEEEEccccc---eeeeecccceeeeeEE
Q 022716           93 LWDARSGK----C--SQQAEL--S----GENINITYKPDGTHIAVGNRDDELTILDVRKFK---PIHRRKFGYEVNEIAW  157 (293)
Q Consensus        93 vwd~~~~~----~--~~~~~~--~----~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~---~~~~~~~~~~~~~v~~  157 (293)
                      +.++....    .  ...+..  .    ...-.++|.|.++.|+++-+..-..++.++...   .......      ..|
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~------~~~  163 (248)
T PF06977_consen   90 IFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDD------QDL  163 (248)
T ss_dssp             EEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-------HHH
T ss_pred             EEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccc------ccc
Confidence            88873321    1  111221  1    124579999988888877766666666654311   1100000      000


Q ss_pred             ecCCCEEEEecCCCCEEEEEECCCC-CEEEEecCCCcEEEEeCCCCEEEEEee--c--c-----CCCeeEEEEccCCCEE
Q 022716          158 NMTGEMFFLTTGNAGCYCIAIDPMG-RYFAVGSADSLVSLWDISEMLCVRTFT--K--L-----EWPVRTISFSHTGDYI  227 (293)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~gs~d~~i~iwd~~~~~~~~~~~--~--~-----~~~v~~l~~sp~~~~l  227 (293)
                      ..      .......+..++++|.. .+++.......|..+| .+++.+..+.  .  |     -.....|+|.++|+..
T Consensus       164 ~~------~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LY  236 (248)
T PF06977_consen  164 DD------DKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLY  236 (248)
T ss_dssp             H-------HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EE
T ss_pred             cc------ccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEE
Confidence            00      00011234577888874 5667777778888899 5665544332  2  1     1257889999998644


Q ss_pred             EEecCCCcEE
Q 022716          228 ASASEDLFID  237 (293)
Q Consensus       228 ~s~s~d~~i~  237 (293)
                      ++ |+-+..+
T Consensus       237 Iv-sEpNlfy  245 (248)
T PF06977_consen  237 IV-SEPNLFY  245 (248)
T ss_dssp             EE-ETTTEEE
T ss_pred             EE-cCCceEE
Confidence            44 4444333

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.82  E-value=0.0038  Score=48.41  Aligned_cols=105  Identities=15%  Similarity=0.140  Sum_probs=65.5

Q ss_pred             CCCEEEEecCCCcEEEEeCCCCEEEEE-eeccCCCeeE-EEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEecCCCcce
Q 022716          181 MGRYFAVGSADSLVSLWDISEMLCVRT-FTKLEWPVRT-ISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNS  258 (293)
Q Consensus       181 ~~~~l~~gs~d~~i~iwd~~~~~~~~~-~~~~~~~v~~-l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~i~~  258 (293)
                      -+.-+++|+.+|.|.+|+....-.+.. +..-...|.+ +.--.++.+..+++.|+.|+.|+++.++.+....++.    
T Consensus        69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~----  144 (238)
T KOG2444|consen   69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHN----  144 (238)
T ss_pred             cCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeecccc----
Confidence            356789999999999998752211110 1111122222 2222345578899999999999999888765443322    


Q ss_pred             eEECCCCCeEEEEEcCCCCCCCCc---ceEEEEeeec
Q 022716          259 VEWNPKYNLLAYAGDDKNKYQADE---GVFRIYGFEN  292 (293)
Q Consensus       259 ~~~sp~~~~la~~~~d~~~~~~~~---~~~~~~~~~~  292 (293)
                        | -++..+++.+.|+++.+++.   -++|.|++|.
T Consensus       145 --~-~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  145 --F-ESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             --C-CCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence              1 23566666677777777733   4568888874

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.80  E-value=0.2  Score=40.43  Aligned_cols=179  Identities=17%  Similarity=0.170  Sum_probs=110.2

Q ss_pred             eeEEEEcCCCCCEEEEEeCCC--eEEEEeCCCCeeeeeeeecCceE--EEEEcCCCCEEEEEeCCCeEEEEEccccceee
Q 022716           69 VDQLCWDPKHADLIATASGDK--TVRLWDARSGKCSQQAELSGENI--NITYKPDGTHIAVGNRDDELTILDVRKFKPIH  144 (293)
Q Consensus        69 i~~~~~~~~~~~~l~s~~~d~--~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~  144 (293)
                      ...+.|..+ +.++-|.+.-|  .|+.+|+.+++......+.....  .++... ++.....-.++...+||.++.+.+.
T Consensus        47 TQGL~~~~~-g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~-d~l~qLTWk~~~~f~yd~~tl~~~~  124 (264)
T PF05096_consen   47 TQGLEFLDD-GTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG-DKLYQLTWKEGTGFVYDPNTLKKIG  124 (264)
T ss_dssp             EEEEEEEET-TEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET-TEEEEEESSSSEEEEEETTTTEEEE
T ss_pred             CccEEecCC-CEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC-CEEEEEEecCCeEEEEccccceEEE
Confidence            445666333 45667777655  68899999998777666655432  344443 3444444568899999999888776


Q ss_pred             eecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccC-----CCeeEEE
Q 022716          145 RRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLE-----WPVRTIS  219 (293)
Q Consensus       145 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~-----~~v~~l~  219 (293)
                      +..+..+-+                     -++  .++..|+..+....|+.+|.++++..+.+.-..     ..++.+.
T Consensus       125 ~~~y~~EGW---------------------GLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE  181 (264)
T PF05096_consen  125 TFPYPGEGW---------------------GLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELE  181 (264)
T ss_dssp             EEE-SSS-----------------------EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEE
T ss_pred             EEecCCcce---------------------EEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEE
Confidence            654432221                     122  356667777777889999998887666654322     2466777


Q ss_pred             EccCCCEEEEecCCCcEEEEEcCCCCEEEEEecC----------------CCcceeEECCCCCeEEEEEc
Q 022716          220 FSHTGDYIASASEDLFIDISNVHTGRTVHQIPCR----------------AAMNSVEWNPKYNLLAYAGD  273 (293)
Q Consensus       220 ~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~----------------~~i~~~~~sp~~~~la~~~~  273 (293)
                      +- +|...|=.=....|..-|..+|+.+..+...                .=.|.|+|.|+.+.|..+|.
T Consensus       182 ~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK  250 (264)
T PF05096_consen  182 YI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK  250 (264)
T ss_dssp             EE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred             EE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence            74 6665555556667788899999987665311                12578999998877777764

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.71  E-value=0.0065  Score=34.98  Aligned_cols=31  Identities=23%  Similarity=0.399  Sum_probs=28.5

Q ss_pred             cccEEEEEECCCCCeEEEEeCCCcEEEeecC
Q 022716           20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIE   50 (293)
Q Consensus        20 ~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~   50 (293)
                      ...|.+++|+|..+.||.|..||.|.++.+.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            3579999999999999999999999999874

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.70  E-value=0.14  Score=46.95  Aligned_cols=147  Identities=10%  Similarity=0.152  Sum_probs=75.2

Q ss_pred             eEEEEEcCCCCEEEEEe------CCC--eEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCC
Q 022716          111 NINITYKPDGTHIAVGN------RDD--ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMG  182 (293)
Q Consensus       111 ~~~~~~~~~~~~l~~~~------~d~--~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (293)
                      +...+++|+|+.++...      .|.  .+.+.+... .. .....+.......|++++..+.+......+   .     
T Consensus       352 vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~-~~lt~g~~~t~PsWspDG~~lw~v~dg~~~---~-----  421 (591)
T PRK13616        352 ITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VA-VQVLEGHSLTRPSWSLDADAVWVVVDGNTV---V-----  421 (591)
T ss_pred             cccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cc-eeeecCCCCCCceECCCCCceEEEecCcce---E-----
Confidence            45678999999887665      233  344444321 11 111112223445555554433332211110   0     


Q ss_pred             CEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEE---EEcCCCCE-E---EEEe--cC
Q 022716          183 RYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDI---SNVHTGRT-V---HQIP--CR  253 (293)
Q Consensus       183 ~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~i---w~~~~~~~-~---~~~~--~~  253 (293)
                       ++......+.+.+.+++.++...   .....|.++.|||||..+|.-. ++.|++   -....|.. +   ..+.  ..
T Consensus       422 -~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~  496 (591)
T PRK13616        422 -RVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLG  496 (591)
T ss_pred             -EEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccC
Confidence             01111223445555655543322   3356799999999999887655 467776   33334431 1   1222  22


Q ss_pred             CCcceeEECCCCCeEEEEEc
Q 022716          254 AAMNSVEWNPKYNLLAYAGD  273 (293)
Q Consensus       254 ~~i~~~~~sp~~~~la~~~~  273 (293)
                      ....++.|.+++.++ .+..
T Consensus       497 ~~~~~l~W~~~~~L~-V~~~  515 (591)
T PRK13616        497 DTAVSLDWRTGDSLV-VGRS  515 (591)
T ss_pred             CccccceEecCCEEE-EEec
Confidence            335789999998855 4443

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=96.60  E-value=0.34  Score=40.48  Aligned_cols=101  Identities=14%  Similarity=0.131  Sum_probs=67.2

Q ss_pred             EEEEECCCCCEEEEe-cCCCcEEEEeCCC--C----EE-EEEeeccCCCeeEEEEccCCCEEEEecCCC-cEEEEEcCCC
Q 022716          174 YCIAIDPMGRYFAVG-SADSLVSLWDISE--M----LC-VRTFTKLEWPVRTISFSHTGDYIASASEDL-FIDISNVHTG  244 (293)
Q Consensus       174 ~~~~~~~~~~~l~~g-s~d~~i~iwd~~~--~----~~-~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~-~i~iw~~~~~  244 (293)
                      ..|+|+|+++.|... +..+.|.-|++..  +    .. ...+.........++...+|.+.+++-.++ .|.+++.. |
T Consensus       166 NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G  244 (307)
T COG3386         166 NGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-G  244 (307)
T ss_pred             CceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-C
Confidence            358999999776655 4458888887752  1    11 111222334556677777888776555554 89999998 8


Q ss_pred             CEEEEEecC-CCcceeEE-CCCCCeEEEEEcCC
Q 022716          245 RTVHQIPCR-AAMNSVEW-NPKYNLLAYAGDDK  275 (293)
Q Consensus       245 ~~~~~~~~~-~~i~~~~~-sp~~~~la~~~~d~  275 (293)
                      +++..+..- ..+.+++| .|+.+.|..++...
T Consensus       245 ~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~~  277 (307)
T COG3386         245 KLLGEIKLPVKRPTNPAFGGPDLNTLYITSARS  277 (307)
T ss_pred             cEEEEEECCCCCCccceEeCCCcCEEEEEecCC
Confidence            888776554 66888888 56777766666554

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.57  E-value=0.0094  Score=34.31  Aligned_cols=34  Identities=26%  Similarity=0.195  Sum_probs=29.7

Q ss_pred             cCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCC
Q 022716          211 LEWPVRTISFSHTGDYIASASEDLFIDISNVHTGR  245 (293)
Q Consensus       211 ~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~  245 (293)
                      ...+|..++|+|...++|.|+.||.|.++.+ +++
T Consensus        10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q   43 (47)
T PF12894_consen   10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ   43 (47)
T ss_pred             CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence            3457999999999999999999999999988 443

>PHA02713 hypothetical protein; Provisional

Probab=96.54  E-value=0.11  Score=47.44  Aligned_cols=63  Identities=13%  Similarity=0.043  Sum_probs=37.5

Q ss_pred             CCCEEEEecCC------CcEEEEeCCC---CEEEEEeeccCCCeeEEEEccCCCEEEEecCCC--cEEEEEcCCCC
Q 022716          181 MGRYFAVGSAD------SLVSLWDISE---MLCVRTFTKLEWPVRTISFSHTGDYIASASEDL--FIDISNVHTGR  245 (293)
Q Consensus       181 ~~~~l~~gs~d------~~i~iwd~~~---~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~--~i~iw~~~~~~  245 (293)
                      ++++.+.|+.+      ..+..||..+   +..+..+.........+.+  +|+..++|+.|+  .+..||+.+.+
T Consensus       463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~  536 (557)
T PHA02713        463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYE  536 (557)
T ss_pred             CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCccccc
Confidence            46777777654      2467898775   3444333333333333333  778888998887  56677766544

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=96.53  E-value=0.52  Score=44.40  Aligned_cols=134  Identities=19%  Similarity=0.155  Sum_probs=75.7

Q ss_pred             CCCcEEEeecCCCCCCceeEEEeeCCcCC-eeEEEEcCC----CCCEEEEEeCCCeEEEEeCCCCe--eee----eeeec
Q 022716           40 VDQTARVWHIEPHGHGKVKDIELRGHADS-VDQLCWDPK----HADLIATASGDKTVRLWDARSGK--CSQ----QAELS  108 (293)
Q Consensus        40 ~dg~v~iw~~~~~~~~~~~~~~~~~h~~~-i~~~~~~~~----~~~~l~s~~~d~~i~vwd~~~~~--~~~----~~~~~  108 (293)
                      ....|.-.|++.+   .+. -.+..|... |..++-...    ....-+.|-.+..+..||.+-..  ++.    .+...
T Consensus       502 ~~~~ly~mDLe~G---KVV-~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~  577 (794)
T PF08553_consen  502 NPNKLYKMDLERG---KVV-EEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSK  577 (794)
T ss_pred             CCCceEEEecCCC---cEE-EEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccC
Confidence            3456666666542   211 234444433 554432110    12234467778889999987542  221    11223


Q ss_pred             CceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEe
Q 022716          109 GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVG  188 (293)
Q Consensus       109 ~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g  188 (293)
                      ....+++.+.+| ++|+|+.+|.|+|||--..+ -+.                   .+-+-..+|..|+++.||+++++.
T Consensus       578 ~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~-AKT-------------------~lp~lG~pI~~iDvt~DGkwilaT  636 (794)
T PF08553_consen  578 NNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKR-AKT-------------------ALPGLGDPIIGIDVTADGKWILAT  636 (794)
T ss_pred             CCceEEEecCCc-eEEEEeCCCcEEeecccchh-hhh-------------------cCCCCCCCeeEEEecCCCcEEEEe
Confidence            344566766666 79999999999999932211 000                   111224567788888889887655


Q ss_pred             cCCCcEEEEeC
Q 022716          189 SADSLVSLWDI  199 (293)
Q Consensus       189 s~d~~i~iwd~  199 (293)
                      + +..|.|+++
T Consensus       637 c-~tyLlLi~t  646 (794)
T PF08553_consen  637 C-KTYLLLIDT  646 (794)
T ss_pred             e-cceEEEEEE
Confidence            4 556777764

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=96.50  E-value=0.4  Score=40.07  Aligned_cols=101  Identities=12%  Similarity=0.103  Sum_probs=62.2

Q ss_pred             EEEEEcCCCCEEEEEeC-CCeEEEEEcccc-ceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEec
Q 022716          112 INITYKPDGTHIAVGNR-DDELTILDVRKF-KPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGS  189 (293)
Q Consensus       112 ~~~~~~~~~~~l~~~~~-d~~i~l~d~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs  189 (293)
                      ..++|+||++.|..... .+.+.-+++... -...     .         ....+......+..--++++.+|.+.+++-
T Consensus       166 NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~-----~---------~~~~~~~~~~~G~PDG~~vDadG~lw~~a~  231 (307)
T COG3386         166 NGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIG-----G---------RRGFVDFDEEPGLPDGMAVDADGNLWVAAV  231 (307)
T ss_pred             CceEECCCCCEEEEEeCCCCeEEEEecCcccCccC-----C---------cceEEEccCCCCCCCceEEeCCCCEEEecc
Confidence            46999999988777665 477777776420 0000     0         000111212222333456678888886555


Q ss_pred             CCC-cEEEEeCCCCEEEEEeeccCCCeeEEEEc-cCCCEE
Q 022716          190 ADS-LVSLWDISEMLCVRTFTKLEWPVRTISFS-HTGDYI  227 (293)
Q Consensus       190 ~d~-~i~iwd~~~~~~~~~~~~~~~~v~~l~~s-p~~~~l  227 (293)
                      .+| .|..|+.. ++.+..+.-....+++++|- |+.+.|
T Consensus       232 ~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L  270 (307)
T COG3386         232 WGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTL  270 (307)
T ss_pred             cCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEE
Confidence            554 89999988 88888777666778888885 444444

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=96.43  E-value=0.41  Score=41.25  Aligned_cols=58  Identities=5%  Similarity=-0.023  Sum_probs=34.6

Q ss_pred             CeeEEEEccCCCEEEEecCC-------------------CcEEEEEcCCCCEEEEEec-CCCcceeEECCCCCeEEEEE
Q 022716          214 PVRTISFSHTGDYIASASED-------------------LFIDISNVHTGRTVHQIPC-RAAMNSVEWNPKYNLLAYAG  272 (293)
Q Consensus       214 ~v~~l~~sp~~~~l~s~s~d-------------------~~i~iw~~~~~~~~~~~~~-~~~i~~~~~sp~~~~la~~~  272 (293)
                      ....++|.|||.+.++-+..                   +.|.-++..+++ +..+.. ......++|+|+|+++++-.
T Consensus       125 ~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~-~e~~a~G~rnp~Gl~~d~~G~l~~tdn  202 (367)
T TIGR02604       125 SLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGK-LRVVAHGFQNPYGHSVDSWGDVFFCDN  202 (367)
T ss_pred             cccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCe-EEEEecCcCCCccceECCCCCEEEEcc
Confidence            47789999999865554421                   334444444333 223322 22345799999998877644

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=96.35  E-value=0.45  Score=39.02  Aligned_cols=121  Identities=16%  Similarity=0.159  Sum_probs=67.8

Q ss_pred             CCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeee-----
Q 022716           30 CTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQ-----  104 (293)
Q Consensus        30 ~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~-----  104 (293)
                      ..++.|+.|..+| +.++++... .....   . .+...|..+...|+- +.++.- .|+.+.++++..-.....     
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~-~~~~~---i-~~~~~I~ql~vl~~~-~~llvL-sd~~l~~~~L~~l~~~~~~~~~~   76 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDP-SKPTR---I-LKLSSITQLSVLPEL-NLLLVL-SDGQLYVYDLDSLEPVSTSAPLA   76 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCC-cccee---E-eecceEEEEEEeccc-CEEEEE-cCCccEEEEchhhcccccccccc
Confidence            3578899998888 888888211 11111   1 123348888888764 344433 359999999764432221     


Q ss_pred             ----------eeecCceEEEE--EcCCCCEEEEEeCCCeEEEEEccc----c-ceeeeecccceeeeeEEe
Q 022716          105 ----------AELSGENINIT--YKPDGTHIAVGNRDDELTILDVRK----F-KPIHRRKFGYEVNEIAWN  158 (293)
Q Consensus       105 ----------~~~~~~~~~~~--~~~~~~~l~~~~~d~~i~l~d~~~----~-~~~~~~~~~~~~~~v~~~  158 (293)
                                ......+...+  -.+.+...++.....++.+|....    + ...++...+..+..+.|.
T Consensus        77 ~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~  147 (275)
T PF00780_consen   77 FPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL  147 (275)
T ss_pred             ccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe
Confidence                      11111122222  123333444444456888887654    2 455556667777777776

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.33  E-value=0.5  Score=43.36  Aligned_cols=181  Identities=10%  Similarity=0.054  Sum_probs=83.5

Q ss_pred             CCeeEEEEcCCCCCEEEEEe-----CCC--eEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeE-EEEEcc
Q 022716           67 DSVDQLCWDPKHADLIATAS-----GDK--TVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDEL-TILDVR  138 (293)
Q Consensus        67 ~~i~~~~~~~~~~~~l~s~~-----~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i-~l~d~~  138 (293)
                      ..+...+.+|++....+...     .|.  .+.+++... .. ..+........-.|+|+|+.+++......+ .+.+-.
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~-~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~  427 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VA-VQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVIRDP  427 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cc-eeeecCCCCCCceECCCCCceEEEecCcceEEEeccC
Confidence            35677788998665554442     243  344445422 22 222222234567899998888777533222 222111


Q ss_pred             ccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEE---EeCCCCEE-E---EEe-ec
Q 022716          139 KFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSL---WDISEMLC-V---RTF-TK  210 (293)
Q Consensus       139 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~i---wd~~~~~~-~---~~~-~~  210 (293)
                      ....+....         -+ .++.. . .....+..+.++|||..++.-. ++.|.+   -....+.. +   ..+ ..
T Consensus       428 ~~gql~~~~---------vd-~ge~~-~-~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~  494 (591)
T PRK13616        428 ATGQLARTP---------VD-ASAVA-S-RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPG  494 (591)
T ss_pred             CCceEEEEe---------cc-Cchhh-h-ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecc
Confidence            100000000         00 00000 0 1123455666677776655544 355655   33334431 1   112 22


Q ss_pred             cCCCeeEEEEccCCCEEEEecCCCcEEEEEcC-CCCEEEEEec---CCCcceeEECC
Q 022716          211 LEWPVRTISFSHTGDYIASASEDLFIDISNVH-TGRTVHQIPC---RAAMNSVEWNP  263 (293)
Q Consensus       211 ~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~-~~~~~~~~~~---~~~i~~~~~sp  263 (293)
                      ....+.++.|.+++.++ .+..++...+|-+. .|.....++.   ..++.+|+=+|
T Consensus       495 l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~  550 (591)
T PRK13616        495 LGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASP  550 (591)
T ss_pred             cCCccccceEecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCC
Confidence            33446889999999855 44444444445433 2322222232   33556666666

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.31  E-value=0.014  Score=54.98  Aligned_cols=93  Identities=16%  Similarity=0.267  Sum_probs=65.8

Q ss_pred             CCCEEEEecCCCcEEEEeCCCCEE-EEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEec-CCCcce
Q 022716          181 MGRYFAVGSADSLVSLWDISEMLC-VRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPC-RAAMNS  258 (293)
Q Consensus       181 ~~~~l~~gs~d~~i~iwd~~~~~~-~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~-~~~i~~  258 (293)
                      .+..++.|++.|.+-..|...... ...-.....+|++++|+.+|+.++.|-.+|.|.+||.+.++.++.+.. ..|...
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~  177 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG  177 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence            355788999999999998765322 122223457999999999999999999999999999999888776643 334444


Q ss_pred             e---EECCCCCeEEEEEc
Q 022716          259 V---EWNPKYNLLAYAGD  273 (293)
Q Consensus       259 ~---~~sp~~~~la~~~~  273 (293)
                      +   .|..++..+.++..
T Consensus       178 vi~v~~t~~nS~llt~D~  195 (1206)
T KOG2079|consen  178 VIFVGRTSQNSKLLTSDT  195 (1206)
T ss_pred             EEEEEEeCCCcEEEEccC
Confidence            3   44444444444433

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=96.30  E-value=0.17  Score=43.95  Aligned_cols=131  Identities=12%  Similarity=0.138  Sum_probs=79.4

Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEEccccceee--eec-----------c---cceeeeeE--EecC-----CCEEEEe
Q 022716          111 NINITYKPDGTHIAVGNRDDELTILDVRKFKPIH--RRK-----------F---GYEVNEIA--WNMT-----GEMFFLT  167 (293)
Q Consensus       111 ~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~--~~~-----------~---~~~~~~v~--~~~~-----~~~~~~~  167 (293)
                      +..+.+.++...|+++...|.+.+|.....+...  ...           +   ...+.++.  ..+.     .+..++.
T Consensus         4 v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~~   83 (395)
T PF08596_consen    4 VTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLLD   83 (395)
T ss_dssp             EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE-
T ss_pred             EEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhee
Confidence            4578888998999999999999998764432221  000           0   01111111  0011     0234445


Q ss_pred             cCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEe--ec------cCCCeeEEEEcc-----CC---CEEEEec
Q 022716          168 TGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF--TK------LEWPVRTISFSH-----TG---DYIASAS  231 (293)
Q Consensus       168 ~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~--~~------~~~~v~~l~~sp-----~~---~~l~s~s  231 (293)
                      ...+.+++++.+ +-.++|+|..+|.+.|.|++....+..-  ..      ....++++.|+.     |+   -.|.+|.
T Consensus        84 ~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGT  162 (395)
T PF08596_consen   84 AKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGT  162 (395)
T ss_dssp             --S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEE
T ss_pred             ccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEe
Confidence            557889999985 7779999999999999999887766542  22      123588888873     22   4788888


Q ss_pred             CCCcEEEEEcC
Q 022716          232 EDLFIDISNVH  242 (293)
Q Consensus       232 ~d~~i~iw~~~  242 (293)
                      ..|.+.++.+.
T Consensus       163 n~G~v~~fkIl  173 (395)
T PF08596_consen  163 NSGNVLTFKIL  173 (395)
T ss_dssp             TTSEEEEEEEE
T ss_pred             CCCCEEEEEEe
Confidence            88999998765

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=96.14  E-value=0.4  Score=44.96  Aligned_cols=89  Identities=20%  Similarity=0.296  Sum_probs=54.3

Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEEccc-cceeeeecccc-eeeeeEEecCCCEEEEecCCCCEEEEEECCC---CCEE
Q 022716          111 NINITYKPDGTHIAVGNRDDELTILDVRK-FKPIHRRKFGY-EVNEIAWNMTGEMFFLTTGNAGCYCIAIDPM---GRYF  185 (293)
Q Consensus       111 ~~~~~~~~~~~~l~~~~~d~~i~l~d~~~-~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l  185 (293)
                      +..+..+|+|++++..+..+ +.+..+.. .........+. .+. +.-.+-++.++.......+..+.|||.   +.+|
T Consensus        87 v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~-Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l  164 (717)
T PF10168_consen   87 VHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEIN-CRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL  164 (717)
T ss_pred             EEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCccee-EEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence            34577899999999988755 44555432 11111111111 111 111222334444455567888999987   5899


Q ss_pred             EEecCCCcEEEEeCCC
Q 022716          186 AVGSADSLVSLWDISE  201 (293)
Q Consensus       186 ~~gs~d~~i~iwd~~~  201 (293)
                      ++=++|+++++||+.+
T Consensus       165 ~vLtsdn~lR~y~~~~  180 (717)
T PF10168_consen  165 VVLTSDNTLRLYDISD  180 (717)
T ss_pred             EEEecCCEEEEEecCC
Confidence            9999999999999865

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.97  E-value=1  Score=39.52  Aligned_cols=159  Identities=13%  Similarity=0.128  Sum_probs=81.9

Q ss_pred             eeEEEEcCCCCCEEEEEeCCCe----EEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCC-----------eEE
Q 022716           69 VDQLCWDPKHADLIATASGDKT----VRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDD-----------ELT  133 (293)
Q Consensus        69 i~~~~~~~~~~~~l~s~~~d~~----i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~-----------~i~  133 (293)
                      +....++|++..++++.+..|.    +++.|+.+++.+...........+.|.++++.++....+.           .+.
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~  205 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVY  205 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEE
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEE
Confidence            3456788887656666555554    9999999997654321112222399999998887776433           244


Q ss_pred             EEEccccceeeeecccceeeeeEEecCCCEEEEecCCC-C-EEEEEECCCCCEEEEecC---C-CcEEEEeCCCC----E
Q 022716          134 ILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNA-G-CYCIAIDPMGRYFAVGSA---D-SLVSLWDISEM----L  203 (293)
Q Consensus       134 l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~l~~gs~---d-~~i~iwd~~~~----~  203 (293)
                      .|.+.+....                  ..+++..... . ...+..++++++++....   + ..+.+.|+...    .
T Consensus       206 ~~~~gt~~~~------------------d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~  267 (414)
T PF02897_consen  206 RHKLGTPQSE------------------DELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDA  267 (414)
T ss_dssp             EEETTS-GGG-------------------EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-
T ss_pred             EEECCCChHh------------------CeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcC
Confidence            4444332211                  1122222221 2 456778899988765332   2 35777888763    2


Q ss_pred             EEEEeeccCCCeeEEEEccCCCEEEEe---cCCCcEEEEEcCCCC
Q 022716          204 CVRTFTKLEWPVRTISFSHTGDYIASA---SEDLFIDISNVHTGR  245 (293)
Q Consensus       204 ~~~~~~~~~~~v~~l~~sp~~~~l~s~---s~d~~i~iw~~~~~~  245 (293)
                      ....+......+....-+..+.+++..   +..+.|.-.++....
T Consensus       268 ~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~  312 (414)
T PF02897_consen  268 KPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPS  312 (414)
T ss_dssp             SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTS
T ss_pred             CcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccc
Confidence            233333333333333222344333332   223455556666554

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.78  E-value=0.87  Score=41.78  Aligned_cols=104  Identities=13%  Similarity=0.186  Sum_probs=63.4

Q ss_pred             eCCCeEEEEeCCCCeeeeeeee--cCceEEEEE--cCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCC
Q 022716           86 SGDKTVRLWDARSGKCSQQAEL--SGENINITY--KPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTG  161 (293)
Q Consensus        86 ~~d~~i~vwd~~~~~~~~~~~~--~~~~~~~~~--~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~  161 (293)
                      +....+.|||.+.+.......+  .+.+..+.|  .|++..+++.+-.+.|.++--....-..        ..-.|.+-.
T Consensus        48 ~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~--------~~p~w~~i~  119 (631)
T PF12234_consen   48 SSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN--------KGPSWAPIR  119 (631)
T ss_pred             CCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc--------CCcccceeE
Confidence            3456789999999886665555  666777766  5899999999999999887521111000        111122221


Q ss_pred             CEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeC
Q 022716          162 EMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDI  199 (293)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~  199 (293)
                      +.-.......+|....|.++|.+++..+  +.+.|+|-
T Consensus       120 ~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk  155 (631)
T PF12234_consen  120 KIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK  155 (631)
T ss_pred             EEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence            1112222335667788888887766543  46888874

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.77  E-value=0.19  Score=44.18  Aligned_cols=118  Identities=14%  Similarity=0.178  Sum_probs=71.4

Q ss_pred             eecCccccEEEEEECCCCC--e-----EEEEeCCCcEEEeecCCCCCCceeEEEeeCCc----CCeeEEEEcCCCCCEEE
Q 022716           15 EYTGHKKKVHSVAWNCTGT--K-----LASGSVDQTARVWHIEPHGHGKVKDIELRGHA----DSVDQLCWDPKHADLIA   83 (293)
Q Consensus        15 ~~~~h~~~v~~l~~s~~~~--~-----l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~----~~i~~~~~~~~~~~~l~   83 (293)
                      ++.-|.. |.-+.+.|+.+  +     -+.|-+|+.|.-||..-+....+.  -..+|.    ..-.|.+  .++...++
T Consensus       371 EWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~--~~q~kqy~~k~nFsc~a--TT~sG~Iv  445 (644)
T KOG2395|consen  371 EWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLA--VVQSKQYSTKNNFSCFA--TTESGYIV  445 (644)
T ss_pred             EeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceee--eeeccccccccccceee--ecCCceEE
Confidence            3333443 77777777653  2     255777888888987643322111  112221    1223333  33456889


Q ss_pred             EEeCCCeEEEEeCCCCeeeeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEcc
Q 022716           84 TASGDKTVRLWDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVR  138 (293)
Q Consensus        84 s~~~d~~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~  138 (293)
                      .||.+|.||+||--..+....+. +..++..+..+.+|+++++.+ +..+.+.++.
T Consensus       446 vgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~  500 (644)
T KOG2395|consen  446 VGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTL  500 (644)
T ss_pred             EeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence            99999999999963322222333 455667788899999876654 6777777754

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=95.58  E-value=1.2  Score=37.48  Aligned_cols=196  Identities=16%  Similarity=0.172  Sum_probs=111.0

Q ss_pred             CeEEEEeCCCCeeeeeeeecCce--------EEEEEcCCCCEEEEEe--CCCeEEEEEccccceeeeecccceeeeeEEe
Q 022716           89 KTVRLWDARSGKCSQQAELSGEN--------INITYKPDGTHIAVGN--RDDELTILDVRKFKPIHRRKFGYEVNEIAWN  158 (293)
Q Consensus        89 ~~i~vwd~~~~~~~~~~~~~~~~--------~~~~~~~~~~~l~~~~--~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~  158 (293)
                      -.|.+||.++-.....+.....+        ...+++.||+++++.-  -...|.+.|+...+.+.+...+.-....-+.
T Consensus        67 Dvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~  146 (342)
T PF06433_consen   67 DVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSG  146 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEE
T ss_pred             eEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecC
Confidence            34889999988777766665431        1367889999888764  3457899999888777665543322222222


Q ss_pred             cCCCEEEEecCCCCEEEEEECCCCCE---------------------------EEEecCCCcEEEEeCCCCE--EEEEee
Q 022716          159 MTGEMFFLTTGNAGCYCIAIDPMGRY---------------------------FAVGSADSLVSLWDISEML--CVRTFT  209 (293)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------l~~gs~d~~i~iwd~~~~~--~~~~~~  209 (293)
                        ...+...|+++....+.+..+|+.                           ++--+-+|.|+-.|+....  ....+.
T Consensus       147 --~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~  224 (342)
T PF06433_consen  147 --NRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWS  224 (342)
T ss_dssp             --TTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEE
T ss_pred             --CCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCccc
Confidence              234555566655555544433332                           2223444555555543321  111111


Q ss_pred             c-------cCC---CeeEEEEccCCCEEEEe---c-----CC--CcEEEEEcCCCCEEEEEecCCCcceeEECCCCC-eE
Q 022716          210 K-------LEW---PVRTISFSHTGDYIASA---S-----ED--LFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYN-LL  268 (293)
Q Consensus       210 ~-------~~~---~v~~l~~sp~~~~l~s~---s-----~d--~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~-~l  268 (293)
                      -       ..+   ...-+++++..+.|..-   +     .|  ..|-++|..+++.+..++...++.+|..+-+.+ +|
T Consensus       225 ~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L  304 (342)
T PF06433_consen  225 LLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLL  304 (342)
T ss_dssp             SS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EE
T ss_pred             ccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEE
Confidence            0       011   23446777655544332   1     12  236777899999999998888899999998764 55


Q ss_pred             EEE-EcCCCCCCCCcceEE
Q 022716          269 AYA-GDDKNKYQADEGVFR  286 (293)
Q Consensus       269 a~~-~~d~~~~~~~~~~~~  286 (293)
                      ... ..++.+.++|-.+.|
T Consensus       305 ~~~~~~~~~l~v~D~~tGk  323 (342)
T PF06433_consen  305 YALSAGDGTLDVYDAATGK  323 (342)
T ss_dssp             EEEETTTTEEEEEETTT--
T ss_pred             EEEcCCCCeEEEEeCcCCc
Confidence            433 445666666554443

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=95.57  E-value=1.3  Score=37.67  Aligned_cols=66  Identities=17%  Similarity=0.110  Sum_probs=39.7

Q ss_pred             CCeeEEEEcc-------CCCEEEEecCCCcEEEEEcCCCCEEE---EEe--cCCCcceeEECCCCCeEEEEEcCCCCC
Q 022716          213 WPVRTISFSH-------TGDYIASASEDLFIDISNVHTGRTVH---QIP--CRAAMNSVEWNPKYNLLAYAGDDKNKY  278 (293)
Q Consensus       213 ~~v~~l~~sp-------~~~~l~s~s~d~~i~iw~~~~~~~~~---~~~--~~~~i~~~~~sp~~~~la~~~~d~~~~  278 (293)
                      ..+..+.|-+       .|.++++.-..+.|....+.....+.   .+.  ...+++.+++.|||+++++.+.++.+|
T Consensus       253 ~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  253 SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY  330 (331)
T ss_dssp             --EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred             cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence            3455566642       45566666666677777766443322   221  223688999999999999988777654

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=95.44  E-value=1.9  Score=38.84  Aligned_cols=172  Identities=13%  Similarity=0.157  Sum_probs=86.4

Q ss_pred             eEEEEeCCCCeeeeeeeecCce-------EEEEEc----CCCC---EEEEEeCCCeEEEEEccccceeeeecccceeeee
Q 022716           90 TVRLWDARSGKCSQQAELSGEN-------INITYK----PDGT---HIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEI  155 (293)
Q Consensus        90 ~i~vwd~~~~~~~~~~~~~~~~-------~~~~~~----~~~~---~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v  155 (293)
                      .+.-.|.++++..-..+...+.       ....+.    -++.   .+++++.+|.+..+|.++.+.+-......  ..+
T Consensus       257 ~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~--~~~  334 (488)
T cd00216         257 SIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE--QPM  334 (488)
T ss_pred             eEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec--ccc
Confidence            6888899999876654432110       000111    1333   57788889999999999887654432210  001


Q ss_pred             EEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeecc--C------CCeeEEEEccCCCEE
Q 022716          156 AWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL--E------WPVRTISFSHTGDYI  227 (293)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~--~------~~v~~l~~sp~~~~l  227 (293)
                      ..++  ..+++......   ..+......+.....+|.+.-.|+.+++.+=+....  .      .+...-.....+..|
T Consensus       335 ~~~~--~~vyv~~~~~~---~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v  409 (488)
T cd00216         335 AYDP--GLVYLGAFHIP---LGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLV  409 (488)
T ss_pred             ccCC--ceEEEcccccc---ccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeE
Confidence            1111  11111110000   000000000011223455666666666543222111  0      111110111256788


Q ss_pred             EEecCCCcEEEEEcCCCCEEEEEecCCCcce--eEECCCCCeE
Q 022716          228 ASASEDLFIDISNVHTGRTVHQIPCRAAMNS--VEWNPKYNLL  268 (293)
Q Consensus       228 ~s~s~d~~i~iw~~~~~~~~~~~~~~~~i~~--~~~sp~~~~l  268 (293)
                      +.++.|+.++-+|..+|+.+-..+...++.+  +.+..++.++
T Consensus       410 ~~g~~dG~l~ald~~tG~~lW~~~~~~~~~a~P~~~~~~g~~y  452 (488)
T cd00216         410 FAGAADGYFRAFDATTGKELWKFRTPSGIQATPMTYEVNGKQY  452 (488)
T ss_pred             EEECCCCeEEEEECCCCceeeEEECCCCceEcCEEEEeCCEEE
Confidence            8999999999999999999877776555533  5555566443

The alignment model contains an 8-bladed beta-propeller.

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.43  E-value=0.65  Score=41.01  Aligned_cols=93  Identities=14%  Similarity=0.175  Sum_probs=58.6

Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCC---CEEEEe
Q 022716          112 INITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMG---RYFAVG  188 (293)
Q Consensus       112 ~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~g  188 (293)
                      ..+..++.|..++..+.+|-+.+.=.+...+....+.+..+-.+.-.+-+..++..+..-.+..++|||+.   ..+..-
T Consensus       107 ~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~iL  186 (741)
T KOG4460|consen  107 YQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLVLL  186 (741)
T ss_pred             EEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEEEE
Confidence            34667899999999999987766543433333333333222222222333444444444455678899975   778888


Q ss_pred             cCCCcEEEEeCCCCEE
Q 022716          189 SADSLVSLWDISEMLC  204 (293)
Q Consensus       189 s~d~~i~iwd~~~~~~  204 (293)
                      ++|+.|++||....+.
T Consensus       187 ~sdnviRiy~lS~~te  202 (741)
T KOG4460|consen  187 TSDNVIRIYSLSEPTE  202 (741)
T ss_pred             ecCcEEEEEecCCcch
Confidence            9999999999865443

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=95.32  E-value=1.2  Score=36.03  Aligned_cols=183  Identities=16%  Similarity=0.150  Sum_probs=101.4

Q ss_pred             ccEEEEEECCCCCeEEEEeCCC--cEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCC
Q 022716           21 KKVHSVAWNCTGTKLASGSVDQ--TARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS   98 (293)
Q Consensus        21 ~~v~~l~~s~~~~~l~s~~~dg--~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~   98 (293)
                      .--..+.|.++|..+-+.+.-|  .|+.+|++...  ......++.. -.--.++...  ..++.-.-.++...+||..+
T Consensus        45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~--~~~~~~l~~~-~FgEGit~~~--d~l~qLTWk~~~~f~yd~~t  119 (264)
T PF05096_consen   45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGK--VLQSVPLPPR-YFGEGITILG--DKLYQLTWKEGTGFVYDPNT  119 (264)
T ss_dssp             -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSS--EEEEEE-TTT---EEEEEEET--TEEEEEESSSSEEEEEETTT
T ss_pred             ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCc--EEEEEECCcc-ccceeEEEEC--CEEEEEEecCCeEEEEcccc
Confidence            4567888877888888888876  77788887532  2222333221 1111222221  22333334467788999998


Q ss_pred             CeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecc---cc---eeeeeEEecCCCEEEEecCCCC
Q 022716           99 GKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF---GY---EVNEIAWNMTGEMFFLTTGNAG  172 (293)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~---~~---~~~~v~~~~~~~~~~~~~~~~~  172 (293)
                      -+.+..+...+.-..++  .|++.|+....+.++..+|.++++..+....   +.   .++.+.|-              
T Consensus       120 l~~~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i--------------  183 (264)
T PF05096_consen  120 LKKIGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI--------------  183 (264)
T ss_dssp             TEEEEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE--------------
T ss_pred             ceEEEEEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE--------------
Confidence            88888777777766676  5677888887788999999988876655432   11   12223321              


Q ss_pred             EEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEee---------------ccCCCeeEEEEccCCC-EEEEecC
Q 022716          173 CYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT---------------KLEWPVRTISFSHTGD-YIASASE  232 (293)
Q Consensus       173 ~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~---------------~~~~~v~~l~~sp~~~-~l~s~s~  232 (293)
                              +|...|=.=....|...|..+|.....+.               ....-.+.|+|.|... +++||-.
T Consensus       184 --------~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~  251 (264)
T PF05096_consen  184 --------NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKL  251 (264)
T ss_dssp             --------TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT
T ss_pred             --------cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCC
Confidence                    23333333334456666666666554331               0123478899988754 5577644

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.25  E-value=1.9  Score=37.78  Aligned_cols=115  Identities=16%  Similarity=0.189  Sum_probs=66.8

Q ss_pred             ccEEEEEECCCCCeEEEE-eCCC----cEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCC-------
Q 022716           21 KKVHSVAWNCTGTKLASG-SVDQ----TARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD-------   88 (293)
Q Consensus        21 ~~v~~l~~s~~~~~l~s~-~~dg----~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d-------   88 (293)
                      ..+....+||+|+++|-+ +..|    .++++|++.+   ....-.+..-  .-..+.|.+++..++++...+       
T Consensus       124 ~~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg---~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~  198 (414)
T PF02897_consen  124 VSLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETG---KFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDS  198 (414)
T ss_dssp             EEEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTT---EEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CC
T ss_pred             EEeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCC---cCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccC
Confidence            345578899999998754 3344    5999999753   2221122211  112389998766666665333       


Q ss_pred             ---CeEEEEeCCCCeee--eeeeec--Cc-eEEEEEcCCCCEEEEEeC---C-CeEEEEEcccc
Q 022716           89 ---KTVRLWDARSGKCS--QQAELS--GE-NINITYKPDGTHIAVGNR---D-DELTILDVRKF  140 (293)
Q Consensus        89 ---~~i~vwd~~~~~~~--~~~~~~--~~-~~~~~~~~~~~~l~~~~~---d-~~i~l~d~~~~  140 (293)
                         ..|..|.+.+....  ..++..  .. ...+..++|+++++....   + ..+.+.|+...
T Consensus       199 ~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~  262 (414)
T PF02897_consen  199 GYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG  262 (414)
T ss_dssp             GCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred             CCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence               23677787665432  222222  22 457888999999876543   2 45777787653

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=95.22  E-value=0.63  Score=36.31  Aligned_cols=47  Identities=23%  Similarity=0.417  Sum_probs=35.3

Q ss_pred             CEEEEecCCCcEEEEeCC--CCEEEEEeeccCCCeeEEEEccCCCEEEEe
Q 022716          183 RYFAVGSADSLVSLWDIS--EMLCVRTFTKLEWPVRTISFSHTGDYIASA  230 (293)
Q Consensus       183 ~~l~~gs~d~~i~iwd~~--~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~  230 (293)
                      ..|..+...++|.+|++.  ....+.+|... +.|..+.++..|.||+|-
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTl   77 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTL   77 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEE
Confidence            344444666789999987  44556666554 689999999999999996

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=95.20  E-value=0.15  Score=44.08  Aligned_cols=155  Identities=18%  Similarity=0.147  Sum_probs=85.7

Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEE-EEEECCCCCEEEEecCC
Q 022716          113 NITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCY-CIAIDPMGRYFAVGSAD  191 (293)
Q Consensus       113 ~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~gs~d  191 (293)
                      .+-..|||+.+.+-+. .++.++++.+.....+ +.       .=+..++..      ..++ .+..-..+.-+++++.|
T Consensus       225 qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~r-kl-------~~dspg~~~------~~Vte~l~lL~Gg~SLLv~~~d  289 (733)
T COG4590         225 QLLLTPDGKTLYVRTG-SELVVALLDKRSLQIR-KL-------VDDSPGDSR------HQVTEQLYLLSGGFSLLVVHED  289 (733)
T ss_pred             hhEECCCCCEEEEecC-CeEEEEeecccccchh-hh-------hhcCCCchH------HHHHHHHHHHhCceeEEEEcCC
Confidence            3557899998877665 7888888765332111 10       000000000      0000 01111235567888889


Q ss_pred             CcEEEE-eCCCCE--EEEEeecc---CCCeeEEEEccC--CCEEEEecCCCcEEEEEcCCCCEEEEEecCCCcceeEECC
Q 022716          192 SLVSLW-DISEML--CVRTFTKL---EWPVRTISFSHT--GDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNP  263 (293)
Q Consensus       192 ~~i~iw-d~~~~~--~~~~~~~~---~~~v~~l~~sp~--~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp  263 (293)
                      |-|.-| |.+..-  .++.....   ..++..+  .|+  .+-+++-+..|++..+.....+.+..-.....+.-+++||
T Consensus       290 G~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l--~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~~~~~~~~Sp  367 (733)
T COG4590         290 GLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFL--LPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQAPQLVAMSP  367 (733)
T ss_pred             CceeeeeeeecCCCCcceeeeccccCcccceee--ccccccceEEEEcCCCceeeeecccCcceehhhhhcCcceeeeCc
Confidence            988887 554321  11111111   1223333  243  3456777788888777665555444333334567789999


Q ss_pred             CCCeEEEEEcCCCCCCCCcceEEEEeeecC
Q 022716          264 KYNLLAYAGDDKNKYQADEGVFRIYGFENA  293 (293)
Q Consensus       264 ~~~~la~~~~d~~~~~~~~~~~~~~~~~~~  293 (293)
                      +++++++-.         .|..|+|++||.
T Consensus       368 ~~~~Ll~e~---------~gki~~~~l~Nr  388 (733)
T COG4590         368 NQAYLLSED---------QGKIRLAQLENR  388 (733)
T ss_pred             ccchheeec---------CCceEEEEecCC
Confidence            999988764         367899999983

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.13  E-value=0.089  Score=50.21  Aligned_cols=108  Identities=15%  Similarity=0.089  Sum_probs=66.7

Q ss_pred             CEEEEEECCCCCEEEEecC--CCcEEEEeCCCCEEEE-----Eeecc------CCCeeEEEEccCCC-EEEEecCCCcEE
Q 022716          172 GCYCIAIDPMGRYFAVGSA--DSLVSLWDISEMLCVR-----TFTKL------EWPVRTISFSHTGD-YIASASEDLFID  237 (293)
Q Consensus       172 ~~~~~~~~~~~~~l~~gs~--d~~i~iwd~~~~~~~~-----~~~~~------~~~v~~l~~sp~~~-~l~s~s~d~~i~  237 (293)
                      .+..+.+.+|+...++...  +-.|..||++....-.     -+..+      ......+.|+|.-. ..|.+..|+.|.
T Consensus       102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~  181 (1405)
T KOG3630|consen  102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR  181 (1405)
T ss_pred             cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence            3444555666655444333  3368889987542211     11111      12356677888644 356667888888


Q ss_pred             EEEcCCCCE-EEEEecCCCcceeEECCCCCeEEEEEcCCCCCC
Q 022716          238 ISNVHTGRT-VHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQ  279 (293)
Q Consensus       238 iw~~~~~~~-~~~~~~~~~i~~~~~sp~~~~la~~~~d~~~~~  279 (293)
                      +..+..... ...++.....++++|+|+|.+++.|-..+.+-|
T Consensus       182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQ  224 (1405)
T KOG3630|consen  182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQ  224 (1405)
T ss_pred             hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEE
Confidence            887654332 333455667899999999999999987765544

>PHA03098 kelch-like protein; Provisional

Probab=95.13  E-value=2  Score=39.16  Aligned_cols=105  Identities=11%  Similarity=0.154  Sum_probs=52.1

Q ss_pred             CCCEEEEecCC------CcEEEEeCCCCEEEEEeeccCCC-eeEEEEccCCCEEEEecCC--------CcEEEEEcCCCC
Q 022716          181 MGRYFAVGSAD------SLVSLWDISEMLCVRTFTKLEWP-VRTISFSHTGDYIASASED--------LFIDISNVHTGR  245 (293)
Q Consensus       181 ~~~~l~~gs~d------~~i~iwd~~~~~~~~~~~~~~~~-v~~l~~sp~~~~l~s~s~d--------~~i~iw~~~~~~  245 (293)
                      +++.++.|+.+      +.+..||..+.+-.. ......+ -...+...++...+.|+.+        ..+.+||..+.+
T Consensus       389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~-~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~  467 (534)
T PHA03098        389 NNLIYVIGGISKNDELLKTVECFSLNTNKWSK-GSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNK  467 (534)
T ss_pred             CCEEEEECCcCCCCcccceEEEEeCCCCeeee-cCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCc
Confidence            56777777632      458889987643221 1111111 0111223456666777643        237888887764


Q ss_pred             EEE--EEec-CCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeee
Q 022716          246 TVH--QIPC-RAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE  291 (293)
Q Consensus       246 ~~~--~~~~-~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~  291 (293)
                      -..  .++. +.....+.+  ++.+++.||.+...+   ...+.+|+.+
T Consensus       468 W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~---~~~v~~yd~~  511 (534)
T PHA03098        468 WTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYY---INEIEVYDDK  511 (534)
T ss_pred             eeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcc---cceeEEEeCC
Confidence            322  1221 111112223  677888888764322   2345666654

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.04  E-value=0.24  Score=47.15  Aligned_cols=100  Identities=15%  Similarity=0.212  Sum_probs=64.2

Q ss_pred             CEEEEEeCCCeEEEEeCCCCee--eeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecc-cc---eee
Q 022716           80 DLIATASGDKTVRLWDARSGKC--SQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF-GY---EVN  153 (293)
Q Consensus        80 ~~l~s~~~d~~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~-~~---~~~  153 (293)
                      ..++.|+..|.+-..|....-+  .+-....+++.+++|+.+|+.++.|-.+|.|.+||+....+.+.... +.   .+-
T Consensus       100 ~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi  179 (1206)
T KOG2079|consen  100 VPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVI  179 (1206)
T ss_pred             eeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEE
Confidence            4567777778887777654322  22234567889999999999999999999999999988777666542 22   233


Q ss_pred             eeEEecCCCEEEEecCCCCEEEEEEC
Q 022716          154 EIAWNMTGEMFFLTTGNAGCYCIAID  179 (293)
Q Consensus       154 ~v~~~~~~~~~~~~~~~~~~~~~~~~  179 (293)
                      .+.|...+..+....+.+..+.+.++
T Consensus       180 ~v~~t~~nS~llt~D~~Gsf~~lv~n  205 (1206)
T KOG2079|consen  180 FVGRTSQNSKLLTSDTGGSFWKLVFN  205 (1206)
T ss_pred             EEEEeCCCcEEEEccCCCceEEEEec
Confidence            34444444333333333335555544

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=94.91  E-value=1  Score=41.40  Aligned_cols=98  Identities=14%  Similarity=0.212  Sum_probs=65.2

Q ss_pred             EEECCCCCEEEEecCCCcEEEEeCCCCEEEEEee-ccCCCeeEEEEc--cCCCEEEEecCCCcEEEEEcCC---------
Q 022716          176 IAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT-KLEWPVRTISFS--HTGDYIASASEDLFIDISNVHT---------  243 (293)
Q Consensus       176 ~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~-~~~~~v~~l~~s--p~~~~l~s~s~d~~i~iw~~~~---------  243 (293)
                      +.-+..++..++-+...++.|||.+.+....+-. ....+|..++|.  |+|+.+.+.+-...|.++.-..         
T Consensus        35 i~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~  114 (631)
T PF12234_consen   35 ISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPS  114 (631)
T ss_pred             EeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcc
Confidence            3334445555555555679999998876433221 335689999986  7899998888888888875421         


Q ss_pred             CCEEEEEe---c-CCCcceeEECCCCCeEEEEEc
Q 022716          244 GRTVHQIP---C-RAAMNSVEWNPKYNLLAYAGD  273 (293)
Q Consensus       244 ~~~~~~~~---~-~~~i~~~~~sp~~~~la~~~~  273 (293)
                      ...++.+.   + ..+|.+..|-++|..++.+|.
T Consensus       115 w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGN  148 (631)
T PF12234_consen  115 WAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGN  148 (631)
T ss_pred             cceeEEEEeecCCCCCccceeEecCCeEEEEeCC
Confidence            12334332   2 247899999999987776663

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PHA02713 hypothetical protein; Provisional

Probab=94.73  E-value=1.7  Score=39.77  Aligned_cols=79  Identities=14%  Similarity=0.078  Sum_probs=40.6

Q ss_pred             cEEEEeCCCCEE--EEEeeccCCCeeEEEEccCCCEEEEecCC------CcEEEEEcCC-CCE--EEEEecCC-CcceeE
Q 022716          193 LVSLWDISEMLC--VRTFTKLEWPVRTISFSHTGDYIASASED------LFIDISNVHT-GRT--VHQIPCRA-AMNSVE  260 (293)
Q Consensus       193 ~i~iwd~~~~~~--~~~~~~~~~~v~~l~~sp~~~~l~s~s~d------~~i~iw~~~~-~~~--~~~~~~~~-~i~~~~  260 (293)
                      .+..||.++..-  +..+......  .-...-+++..+.|+.+      ..+..||..+ .+-  +..++... ....+.
T Consensus       433 ~ve~YDP~td~W~~v~~m~~~r~~--~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~  510 (557)
T PHA02713        433 KVIRYDTVNNIWETLPNFWTGTIR--PGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL  510 (557)
T ss_pred             eEEEECCCCCeEeecCCCCccccc--CcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE
Confidence            477788765432  2222111111  11122356666677654      2367899887 332  23333222 222333


Q ss_pred             ECCCCCeEEEEEcCC
Q 022716          261 WNPKYNLLAYAGDDK  275 (293)
Q Consensus       261 ~sp~~~~la~~~~d~  275 (293)
                      .  ++.++++||.++
T Consensus       511 ~--~~~iyv~Gg~~~  523 (557)
T PHA02713        511 H--DNTIMMLHCYES  523 (557)
T ss_pred             E--CCEEEEEeeecc
Confidence            3  678999999776

>PHA03098 kelch-like protein; Provisional

Probab=94.69  E-value=3.1  Score=37.88  Aligned_cols=62  Identities=8%  Similarity=0.118  Sum_probs=31.4

Q ss_pred             CCCEEEEecCC--------CcEEEEeCCCCEEE--EEeeccCCCeeEEEEccCCCEEEEecCC-----CcEEEEEcCCC
Q 022716          181 MGRYFAVGSAD--------SLVSLWDISEMLCV--RTFTKLEWPVRTISFSHTGDYIASASED-----LFIDISNVHTG  244 (293)
Q Consensus       181 ~~~~l~~gs~d--------~~i~iwd~~~~~~~--~~~~~~~~~v~~l~~sp~~~~l~s~s~d-----~~i~iw~~~~~  244 (293)
                      ++..++.|+.+        ..+.+||..+.+-.  ..+.........+.  .+++..+.|+.+     ..+.++|..+.
T Consensus       437 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~  513 (534)
T PHA03098        437 DGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI--FNNKIYVVGGDKYEYYINEIEVYDDKTN  513 (534)
T ss_pred             CCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE--ECCEEEEEcCCcCCcccceeEEEeCCCC
Confidence            45666666543        23888888764322  11111111112222  266677777654     34667776554

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=94.66  E-value=4.3  Score=38.87  Aligned_cols=98  Identities=11%  Similarity=0.174  Sum_probs=60.0

Q ss_pred             EEEECCC-CCEEEEecC----------CCcEEEEeCCCCEEEEEeecc--CCCeeEEEEccCCCEEEEecCCCcEEEEEc
Q 022716          175 CIAIDPM-GRYFAVGSA----------DSLVSLWDISEMLCVRTFTKL--EWPVRTISFSHTGDYIASASEDLFIDISNV  241 (293)
Q Consensus       175 ~~~~~~~-~~~l~~gs~----------d~~i~iwd~~~~~~~~~~~~~--~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~  241 (293)
                      +..|+.| +.++++|+.          .|.|.+|.......++....+  ++.+.++.. -+|++||.  =...|++++.
T Consensus       779 s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~-fngkllA~--In~~vrLye~  855 (1096)
T KOG1897|consen  779 SCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVE-FNGKLLAG--INQSVRLYEW  855 (1096)
T ss_pred             eeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhh-hCCeEEEe--cCcEEEEEEc
Confidence            3446666 778888862          367777776553334433332  345555542 36777765  4456888888


Q ss_pred             CCCCEEEE-EecCCCcceeEECCCCCeEEEEEcCC
Q 022716          242 HTGRTVHQ-IPCRAAMNSVEWNPKYNLLAYAGDDK  275 (293)
Q Consensus       242 ~~~~~~~~-~~~~~~i~~~~~sp~~~~la~~~~d~  275 (293)
                      .+.+.++. .....++..+...-.+..+|.|..=+
T Consensus       856 t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~  890 (1096)
T KOG1897|consen  856 TTERELRIECNISNPIIALDLQVKGDEIAVGDLMR  890 (1096)
T ss_pred             cccceehhhhcccCCeEEEEEEecCcEEEEeeccc
Confidence            77755542 23345677777777888888887543

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=94.63  E-value=2.3  Score=35.52  Aligned_cols=101  Identities=23%  Similarity=0.324  Sum_probs=58.7

Q ss_pred             CCEEEEEECCCCCEEEEecCCCcEEEEeCCC--CEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEE-cCCCCEE
Q 022716          171 AGCYCIAIDPMGRYFAVGSADSLVSLWDISE--MLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISN-VHTGRTV  247 (293)
Q Consensus       171 ~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~--~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~-~~~~~~~  247 (293)
                      ..+..+...++++++++++.-+-..-||.-.  ..+..  ..-...|.++.|+|++...+.+ ..+.|++-+ .......
T Consensus       145 gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~--r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w  221 (302)
T PF14870_consen  145 GSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHN--RNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETW  221 (302)
T ss_dssp             --EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE----SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE
T ss_pred             ceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEc--cCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcccc
Confidence            4566777889999998887666666787643  33322  2345689999999998876654 889999888 2222222


Q ss_pred             EE--Eec---CCCcceeEECCCCCeEEEEEcC
Q 022716          248 HQ--IPC---RAAMNSVEWNPKYNLLAYAGDD  274 (293)
Q Consensus       248 ~~--~~~---~~~i~~~~~sp~~~~la~~~~d  274 (293)
                      ..  .+.   .-.+-.++|.|+.+..|+|+..
T Consensus       222 ~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G  253 (302)
T PF14870_consen  222 SEPIIPIKTNGYGILDLAYRPPNEIWAVGGSG  253 (302)
T ss_dssp             ---B-TTSS--S-EEEEEESSSS-EEEEESTT
T ss_pred             ccccCCcccCceeeEEEEecCCCCEEEEeCCc
Confidence            11  221   1236788999998888888754

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=94.43  E-value=0.45  Score=43.48  Aligned_cols=72  Identities=15%  Similarity=0.116  Sum_probs=44.7

Q ss_pred             CCCCEEEEecCCCcEEEEeCCC----CEEEEE--ee---------c-----------cCCCeeEEEEcc----CCCEEEE
Q 022716          180 PMGRYFAVGSADSLVSLWDISE----MLCVRT--FT---------K-----------LEWPVRTISFSH----TGDYIAS  229 (293)
Q Consensus       180 ~~~~~l~~gs~d~~i~iwd~~~----~~~~~~--~~---------~-----------~~~~v~~l~~sp----~~~~l~s  229 (293)
                      ++...++.+..||.+.......    +.....  +.         +           ......+++.++    +..+|++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            4566778888888887776543    111111  11         0           012355666666    6789999


Q ss_pred             ecCCCcEEEEEcCCCCEEEEEe
Q 022716          230 ASEDLFIDISNVHTGRTVHQIP  251 (293)
Q Consensus       230 ~s~d~~i~iw~~~~~~~~~~~~  251 (293)
                      .+.|+.+++||+.+++.+..+.
T Consensus       236 l~~D~~LRiW~l~t~~~~~~~~  257 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCLATID  257 (547)
T ss_dssp             EETTSEEEEEETTTTCEEEEEE
T ss_pred             EeCCCeEEEEECCCCeEEEEec
Confidence            9999999999999999877654

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=94.30  E-value=3.4  Score=36.19  Aligned_cols=153  Identities=13%  Similarity=0.190  Sum_probs=82.0

Q ss_pred             CCCCCEEEEEeCCCeEEEEeCCCCe-----eeeeeeecCceEEEEEcC----CCCEEEEEeCCCeEEEEEccccceeeee
Q 022716           76 PKHADLIATASGDKTVRLWDARSGK-----CSQQAELSGENINITYKP----DGTHIAVGNRDDELTILDVRKFKPIHRR  146 (293)
Q Consensus        76 ~~~~~~l~s~~~d~~i~vwd~~~~~-----~~~~~~~~~~~~~~~~~~----~~~~l~~~~~d~~i~l~d~~~~~~~~~~  146 (293)
                      +++.+.++.|+..|.++||+...+.     .+-..+...++..+...+    .....++.-.-..+.+|.+......  .
T Consensus        34 ~~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~--~  111 (418)
T PF14727_consen   34 PSGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGT--V  111 (418)
T ss_pred             CCCccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCC--c
Confidence            4456789999999999999975443     333455667777766432    1222333345667777776321110  0


Q ss_pred             cccceeeeeEEecCCCEEEEecC--CCCEEEEEECC----C-CCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEE
Q 022716          147 KFGYEVNEIAWNMTGEMFFLTTG--NAGCYCIAIDP----M-GRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTIS  219 (293)
Q Consensus       147 ~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~~~~~~----~-~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~  219 (293)
                      .++....         +..+..+  .....++...|    . ...+.+-+.||.+.+|+-+...-...+.. .--...+.
T Consensus       112 ~~g~~~~---------L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~  181 (418)
T PF14727_consen  112 EHGNQYQ---------LELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLC  181 (418)
T ss_pred             ccCcEEE---------EEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeE
Confidence            0000000         0000000  00111122211    2 35788889999999999776543333333 22233467


Q ss_pred             EccCCCEEEEecCCCcEEEEE
Q 022716          220 FSHTGDYIASASEDLFIDISN  240 (293)
Q Consensus       220 ~sp~~~~l~s~s~d~~i~iw~  240 (293)
                      |.|.-..+++++.+..+.-|.
T Consensus       182 Y~~~tDsfvt~sss~~l~~Yk  202 (418)
T PF14727_consen  182 YCPRTDSFVTASSSWTLECYK  202 (418)
T ss_pred             EeecCCEEEEecCceeEEEec
Confidence            777777777777776665554

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=94.19  E-value=2.5  Score=34.31  Aligned_cols=143  Identities=14%  Similarity=0.165  Sum_probs=79.9

Q ss_pred             ceEEEEEcCCCCEEEEEe--C-CCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEE
Q 022716          110 ENINITYKPDGTHIAVGN--R-DDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFA  186 (293)
Q Consensus       110 ~~~~~~~~~~~~~l~~~~--~-d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  186 (293)
                      ...+.+.+++++.++...  . ...+.++....  ......                     ....+..-.|++++...+
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~--~~~~~~---------------------~g~~l~~PS~d~~g~~W~   81 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGG--PVRPVL---------------------TGGSLTRPSWDPDGWVWT   81 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCC--cceeec---------------------cCCccccccccCCCCEEE
Confidence            455788899998777665  2 23444443322  111100                     111333456677766666


Q ss_pred             EecCCCcEEEEe-CCCCEE-EEEeecc--CCCeeEEEEccCCCEEEEec---CCCcEEEEEcC---CC--CEE---EEEe
Q 022716          187 VGSADSLVSLWD-ISEMLC-VRTFTKL--EWPVRTISFSHTGDYIASAS---EDLFIDISNVH---TG--RTV---HQIP  251 (293)
Q Consensus       187 ~gs~d~~i~iwd-~~~~~~-~~~~~~~--~~~v~~l~~sp~~~~l~s~s---~d~~i~iw~~~---~~--~~~---~~~~  251 (293)
                      ....+...+++. ...+.. .......  ...|.++++||||..+|.-.   .++.|.+-.+.   .+  ..+   ..+.
T Consensus        82 v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~  161 (253)
T PF10647_consen   82 VDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVA  161 (253)
T ss_pred             EEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEec
Confidence            666666666663 222211 1112111  12899999999999876654   45777777654   23  111   1111


Q ss_pred             --cCCCcceeEECCCCCeEEEEEcCC
Q 022716          252 --CRAAMNSVEWNPKYNLLAYAGDDK  275 (293)
Q Consensus       252 --~~~~i~~~~~sp~~~~la~~~~d~  275 (293)
                        ....+.+++|.++..+++.+...+
T Consensus       162 ~~~~~~v~~v~W~~~~~L~V~~~~~~  187 (253)
T PF10647_consen  162 PPLLSDVTDVAWSDDSTLVVLGRSAG  187 (253)
T ss_pred             ccccCcceeeeecCCCEEEEEeCCCC
Confidence              234688999999998877776543

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=94.02  E-value=3.6  Score=35.40  Aligned_cols=190  Identities=17%  Similarity=0.167  Sum_probs=84.9

Q ss_pred             EEcCCCCCEEEEEeCCCe--EEEEeCCCCeeeeeeeecCc-eEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeeccc
Q 022716           73 CWDPKHADLIATASGDKT--VRLWDARSGKCSQQAELSGE-NINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFG  149 (293)
Q Consensus        73 ~~~~~~~~~l~s~~~d~~--i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~  149 (293)
                      +|.+++..+|+++..|+.  +.+.|+.+++..+.....+. ......+|+++.++-......+.-.|+++.+.......+
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p  121 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP  121 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC
Confidence            566776667776665554  56668888887665554332 223556788888776666678888899887644333322


Q ss_pred             ceee-eeEEec--CCCEEEEecCCCCEEEEEEC-CCCCE---------EEEecCCCcEEEEeCCCCEEEEEeeccCCCee
Q 022716          150 YEVN-EIAWNM--TGEMFFLTTGNAGCYCIAID-PMGRY---------FAVGSADSLVSLWDISEMLCVRTFTKLEWPVR  216 (293)
Q Consensus       150 ~~~~-~v~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~---------l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~  216 (293)
                      ..-. ...|..  ++..+..         +... .+...         +.-+-....|.-.|+++++.. .+......+.
T Consensus       122 ~~~~g~gt~v~n~d~t~~~g---------~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~-~v~~~~~wlg  191 (386)
T PF14583_consen  122 DDWKGYGTWVANSDCTKLVG---------IEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERK-VVFEDTDWLG  191 (386)
T ss_dssp             TTEEEEEEEEE-TTSSEEEE---------EEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EE-EEEEESS-EE
T ss_pred             cccccccceeeCCCccEEEE---------EEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCcee-EEEecCcccc
Confidence            2211 122321  1111110         0000 00000         000111234666677777643 3334456788


Q ss_pred             EEEEccCCC-EEEEec---CCCc-EEEEEcCC-CCEEEEEecCCCccee---EECCCCCeEEEEE
Q 022716          217 TISFSHTGD-YIASAS---EDLF-IDISNVHT-GRTVHQIPCRAAMNSV---EWNPKYNLLAYAG  272 (293)
Q Consensus       217 ~l~~sp~~~-~l~s~s---~d~~-i~iw~~~~-~~~~~~~~~~~~i~~~---~~sp~~~~la~~~  272 (293)
                      .+.|+|... .|+-|-   .|.. -+||-+.+ +...+.+..+.+--++   -|.|+|..|..-+
T Consensus       192 H~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~  256 (386)
T PF14583_consen  192 HVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDS  256 (386)
T ss_dssp             EEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEE
T ss_pred             CcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEe
Confidence            999999754 445543   3443 57887764 4434433222222222   4889998777654

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=93.90  E-value=0.04  Score=51.20  Aligned_cols=149  Identities=14%  Similarity=0.169  Sum_probs=76.3

Q ss_pred             CeEEEEeCC--CCeeeeeeee------cCc---eEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEE
Q 022716           89 KTVRLWDAR--SGKCSQQAEL------SGE---NINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAW  157 (293)
Q Consensus        89 ~~i~vwd~~--~~~~~~~~~~------~~~---~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~  157 (293)
                      |...|||++  .|+....+..      ...   +..+-|.++..++..+-.++++++.........--+.++..+.++++
T Consensus       153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~~l~rsHs~~~~d~a~  232 (1283)
T KOG1916|consen  153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALRSLFRSHSQRVTDMAF  232 (1283)
T ss_pred             hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHHHHHHhcCCCcccHHH
Confidence            667888864  3433222221      111   22334455666777777788888766543221100112222222111


Q ss_pred             ecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCC-----CCEEEEEeeccCCCeeEE-EEccCC-------
Q 022716          158 NMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDIS-----EMLCVRTFTKLEWPVRTI-SFSHTG-------  224 (293)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~-----~~~~~~~~~~~~~~v~~l-~~sp~~-------  224 (293)
                      -..|          -+.--.++|||+.+|....||.++.|.+.     .-.++...+.|+.....+ -+..+-       
T Consensus       233 ~~~g----------~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~  302 (1283)
T KOG1916|consen  233 FAEG----------VLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIG  302 (1283)
T ss_pred             Hhhc----------hhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccc
Confidence            1111          11122378999999999999999999863     223455666676432222 122111       


Q ss_pred             --CEEEEecC-CCcEEEEEcCCCCEE
Q 022716          225 --DYIASASE-DLFIDISNVHTGRTV  247 (293)
Q Consensus       225 --~~l~s~s~-d~~i~iw~~~~~~~~  247 (293)
                        .++.++++ ...+++|.....+++
T Consensus       303 ~w~~~Itttd~nre~k~w~~a~w~Cl  328 (1283)
T KOG1916|consen  303 KWVLRITTTDVNREEKFWAEAPWQCL  328 (1283)
T ss_pred             eeEEEEecccCCcceeEeeccchhhh
Confidence              24455554 344788877655443

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=93.89  E-value=0.0064  Score=52.43  Aligned_cols=154  Identities=13%  Similarity=0.108  Sum_probs=96.9

Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCE-EEEec
Q 022716          111 NINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRY-FAVGS  189 (293)
Q Consensus       111 ~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~gs  189 (293)
                      ++...|.|.+..++.++.+..+..+|-.... ..........-                     .++++.++.. ++.+-
T Consensus        37 pi~~~w~~e~~nlavaca~tiv~~YD~agq~-~le~n~tg~al---------------------dm~wDkegdvlavlAe   94 (615)
T KOG2247|consen   37 PIIHRWRPEGHNLAVACANTIVIYYDKAGQV-ILELNPTGKAL---------------------DMAWDKEGDVLAVLAE   94 (615)
T ss_pred             cceeeEecCCCceehhhhhhHHHhhhhhcce-ecccCCchhHh---------------------hhhhccccchhhhhhh
Confidence            4566788888888888888888888843221 11111222222                     3334444433 34455


Q ss_pred             CCCcEEEEeCCCCEEEEEe--ec-cCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEe-cCCCcceeEECCCC
Q 022716          190 ADSLVSLWDISEMLCVRTF--TK-LEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKY  265 (293)
Q Consensus       190 ~d~~i~iwd~~~~~~~~~~--~~-~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~-~~~~i~~~~~sp~~  265 (293)
                      ..+.+.+||+.+-. ..++  .+ +....  +.|++.+..++.+-..+.+.|++..+.+.+-.+. +..++..++|.+.+
T Consensus        95 k~~piylwd~n~ey-tqqLE~gg~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd  171 (615)
T KOG2247|consen   95 KTGPIYLWDVNSEY-TQQLESGGTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED  171 (615)
T ss_pred             cCCCeeechhhhhh-HHHHhccCcchHHH--HhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccc
Confidence            67789999986421 1111  11 11122  6788989999999899999999998877665555 66789999999955


Q ss_pred             CeEEEEEcCCCCCC--CCcceEEEEee
Q 022716          266 NLLAYAGDDKNKYQ--ADEGVFRIYGF  290 (293)
Q Consensus       266 ~~la~~~~d~~~~~--~~~~~~~~~~~  290 (293)
                       +.+.+++|..+-+  ..+.+.+.|..
T Consensus       172 -~vil~dcd~~L~v~~qegeta~ltev  197 (615)
T KOG2247|consen  172 -YVILCDCDNTLSVTTQEGETASLTEV  197 (615)
T ss_pred             -eeeecCcHHHHHHhhhccceeeeeec
Confidence             6677777764443  44455566543

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=93.83  E-value=0.43  Score=26.70  Aligned_cols=32  Identities=31%  Similarity=0.395  Sum_probs=26.7

Q ss_pred             CeeEEEEcCCCC--CEEEEEeCCCeEEEEeCCCC
Q 022716           68 SVDQLCWDPKHA--DLIATASGDKTVRLWDARSG   99 (293)
Q Consensus        68 ~i~~~~~~~~~~--~~l~s~~~d~~i~vwd~~~~   99 (293)
                      .|.++.|+|...  ++|+-+-.-+.|.++|+++.
T Consensus         2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            578899998766  78888888899999999853

It contains a characteristic DLL sequence motif.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=93.67  E-value=3.1  Score=38.25  Aligned_cols=187  Identities=16%  Similarity=0.130  Sum_probs=87.5

Q ss_pred             CCCeEEEEeCC-C-----cEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCe-----EEEEeCCCC
Q 022716           31 TGTKLASGSVD-Q-----TARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKT-----VRLWDARSG   99 (293)
Q Consensus        31 ~~~~l~s~~~d-g-----~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~-----i~vwd~~~~   99 (293)
                      .+...++||.| |     ++..||...+............+.-   .++.  -++.+.+.||.||.     +-.||..+.
T Consensus       332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~---~v~~--l~g~iYavGG~dg~~~l~svE~YDp~~~  406 (571)
T KOG4441|consen  332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDF---GVAV--LDGKLYAVGGFDGEKSLNSVECYDPVTN  406 (571)
T ss_pred             CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccc---eeEE--ECCEEEEEeccccccccccEEEecCCCC
Confidence            45677899998 3     4555665543322211111111111   1121  13467778888865     556777665


Q ss_pred             eeeeeeeecCceEEE-EEcCCCCEEEEEeCCCe------EEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCC
Q 022716          100 KCSQQAELSGENINI-TYKPDGTHIAVGNRDDE------LTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAG  172 (293)
Q Consensus       100 ~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~d~~------i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  172 (293)
                      +.............. ...-+|+..++|+.++.      +..+|..+..-.....+.               ..-.   .
T Consensus       407 ~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~---------------~~R~---~  468 (571)
T KOG4441|consen  407 KWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMN---------------TRRS---G  468 (571)
T ss_pred             cccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcc---------------cccc---c
Confidence            543222111111121 22346778888886653      445565543321111100               0000   0


Q ss_pred             EEEEEECCCCCEEEEecCCC-----cEEEEeCCCCE--EEEEeeccCCCeeEEEEccCCCEEEEecCCCc-----EEEEE
Q 022716          173 CYCIAIDPMGRYFAVGSADS-----LVSLWDISEML--CVRTFTKLEWPVRTISFSHTGDYIASASEDLF-----IDISN  240 (293)
Q Consensus       173 ~~~~~~~~~~~~l~~gs~d~-----~i~iwd~~~~~--~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~-----i~iw~  240 (293)
                      . .++ .-++.+++.|+.|+     +|..||.++..  .+..++.....+-.+.  -+++..+.|+.|+.     |..||
T Consensus       469 ~-g~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~--~~~~ly~vGG~~~~~~l~~ve~yd  544 (571)
T KOG4441|consen  469 F-GVA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVV--LGGKLYAVGGFDGNNNLNTVECYD  544 (571)
T ss_pred             c-eEE-EECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEE--ECCEEEEEecccCccccceeEEcC
Confidence            0 011 23677888888776     36778876543  2211221222221121  25666778887755     34555


Q ss_pred             cCCC
Q 022716          241 VHTG  244 (293)
Q Consensus       241 ~~~~  244 (293)
                      ..+.
T Consensus       545 p~~d  548 (571)
T KOG4441|consen  545 PETD  548 (571)
T ss_pred             CCCC
Confidence            4443

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=93.59  E-value=5.6  Score=36.22  Aligned_cols=106  Identities=14%  Similarity=0.109  Sum_probs=55.8

Q ss_pred             CCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcC--Ce-------eEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeee
Q 022716           32 GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHAD--SV-------DQLCWDPKHADLIATASGDKTVRLWDARSGKCS  102 (293)
Q Consensus        32 ~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~--~i-------~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~  102 (293)
                      +..+..++.++.|.-.|..+..  ............  ..       ..+.+.   ...++.++.|+.+.-.|.++|+.+
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk--~lW~~~~~~~~~~~~~~~~~~~~rg~av~---~~~v~v~t~dg~l~ALDa~TGk~~  143 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGK--ELWKYDPKLPDDVIPVMCCDVVNRGVALY---DGKVFFGTLDARLVALDAKTGKVV  143 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCc--eeeEecCCCCcccccccccccccccceEE---CCEEEEEcCCCEEEEEECCCCCEE
Confidence            4567777778888888876431  222221111100  00       011221   235667788999999999999876


Q ss_pred             eeeeecCce--EEEEEcC---CCCEEEEEeC------CCeEEEEEcccccee
Q 022716          103 QQAELSGEN--INITYKP---DGTHIAVGNR------DDELTILDVRKFKPI  143 (293)
Q Consensus       103 ~~~~~~~~~--~~~~~~~---~~~~l~~~~~------d~~i~l~d~~~~~~~  143 (293)
                      -........  ..+.-+|   ++ .++++..      ++.+..+|.++.+.+
T Consensus       144 W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~l  194 (527)
T TIGR03075       144 WSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLV  194 (527)
T ss_pred             eecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCcee
Confidence            544332111  0111111   33 4555432      578888888776654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=93.47  E-value=2.6  Score=37.40  Aligned_cols=135  Identities=16%  Similarity=0.212  Sum_probs=78.2

Q ss_pred             CCCEEE-EEeCCCeEEEEeCCCCeeeeeeeecCceEEEEEcCCCC-------EEEEEeCCCeEEEEEccccceeeeeccc
Q 022716           78 HADLIA-TASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGT-------HIAVGNRDDELTILDVRKFKPIHRRKFG  149 (293)
Q Consensus        78 ~~~~l~-s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~-------~l~~~~~d~~i~l~d~~~~~~~~~~~~~  149 (293)
                      ++.+++ .|+....+.-.|+.-|+.+..+..+..+ -+.|.|+.+       .-++|-++..|.-.|.|-...       
T Consensus       478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gN-------  549 (776)
T COG5167         478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGN-------  549 (776)
T ss_pred             CcceEEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCC-------
Confidence            344544 4444556677788888888877777666 566666442       345666666666666653210       


Q ss_pred             ceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEE
Q 022716          150 YEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIAS  229 (293)
Q Consensus       150 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s  229 (293)
                       .+.....   ...  .  .... .+........++|+++..|-|++||--..+.-..+.+....|..+..+.+|.++.+
T Consensus       550 -Ki~v~es---KdY--~--tKn~-Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ila  620 (776)
T COG5167         550 -KIKVVES---KDY--K--TKNK-FSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILA  620 (776)
T ss_pred             -ceeeeee---hhc--c--cccc-ccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEE
Confidence             0000000   000  0  0000 11122345678999999999999995332222235566778999999999987644

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.11  E-value=1.2  Score=39.54  Aligned_cols=76  Identities=14%  Similarity=0.170  Sum_probs=51.1

Q ss_pred             CEEEEEECCCCCEEEEecCCCcEEEEeC---------CCCEEE---EEe-------e-ccCCCeeEEEEccCC---CEEE
Q 022716          172 GCYCIAIDPMGRYFAVGSADSLVSLWDI---------SEMLCV---RTF-------T-KLEWPVRTISFSHTG---DYIA  228 (293)
Q Consensus       172 ~~~~~~~~~~~~~l~~gs~d~~i~iwd~---------~~~~~~---~~~-------~-~~~~~v~~l~~sp~~---~~l~  228 (293)
                      .+..+..++.|..++..+.+|.+.++=.         +.++..   +++       . ...-.+...+|+|+.   ..|.
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~  184 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV  184 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence            3566788899999999999997766532         222111   111       1 112246778999986   6788


Q ss_pred             EecCCCcEEEEEcCCCCEE
Q 022716          229 SASEDLFIDISNVHTGRTV  247 (293)
Q Consensus       229 s~s~d~~i~iw~~~~~~~~  247 (293)
                      .-+.|+++++||....+.+
T Consensus       185 iL~sdnviRiy~lS~~tel  203 (741)
T KOG4460|consen  185 LLTSDNVIRIYSLSEPTEL  203 (741)
T ss_pred             EEecCcEEEEEecCCcchh
Confidence            8899999999998765443

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=93.06  E-value=4.2  Score=33.26  Aligned_cols=119  Identities=13%  Similarity=0.117  Sum_probs=69.0

Q ss_pred             cccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeE----------EEeeCCcCCeeEEE-EcCCCCCEEEEEeCC
Q 022716           20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKD----------IELRGHADSVDQLC-WDPKHADLIATASGD   88 (293)
Q Consensus        20 ~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~----------~~~~~h~~~i~~~~-~~~~~~~~l~s~~~d   88 (293)
                      ...|..+..-++-+.|+.=+ |+.+.+++++.-.......          .........+...+ .........+.....
T Consensus        35 ~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~k  113 (275)
T PF00780_consen   35 LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVK  113 (275)
T ss_pred             cceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEEC
Confidence            34599999988877766554 5999999986422111000          00111223444444 112222233344455


Q ss_pred             CeEEEEeCCCC-----eeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccce
Q 022716           89 KTVRLWDARSG-----KCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKP  142 (293)
Q Consensus        89 ~~i~vwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~  142 (293)
                      ..|.+|.....     +....+.....+..++|.  ++.++.|.. +...+.|+.+...
T Consensus       114 k~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~-~~f~~idl~~~~~  169 (275)
T PF00780_consen  114 KKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTS-KGFYLIDLNTGSP  169 (275)
T ss_pred             CEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeC-CceEEEecCCCCc
Confidence            58888776542     344556677888888888  456777764 4577888875543

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=92.87  E-value=4  Score=32.46  Aligned_cols=45  Identities=13%  Similarity=0.091  Sum_probs=39.0

Q ss_pred             EECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEc
Q 022716          177 AIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFS  221 (293)
Q Consensus       177 ~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s  221 (293)
                      +++.+|.+.++.-.-++|.-.|..+++.+.+++-....|++++|-
T Consensus       218 ~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFg  262 (310)
T KOG4499|consen  218 TIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFG  262 (310)
T ss_pred             eEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEec
Confidence            335688888888888999999999999999988778899999996

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=92.82  E-value=1.4  Score=35.01  Aligned_cols=69  Identities=14%  Similarity=0.138  Sum_probs=51.0

Q ss_pred             ECCCCCEEEEecCCCcEEEEeCCCCEEEEEe-------e-------ccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCC
Q 022716          178 IDPMGRYFAVGSADSLVSLWDISEMLCVRTF-------T-------KLEWPVRTISFSHTGDYIASASEDLFIDISNVHT  243 (293)
Q Consensus       178 ~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~-------~-------~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~  243 (293)
                      +...+.++++-+.+|.+++||+.+++.+..-       .       .....|..+.++.+|.-+++-+. |..+.|+..-
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsn-g~~y~y~~~L   96 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSN-GDSYSYSPDL   96 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeC-CCEEEecccc
Confidence            4457889999999999999999987654321       1       23356888899988988777654 6788888765


Q ss_pred             CCEE
Q 022716          244 GRTV  247 (293)
Q Consensus       244 ~~~~  247 (293)
                      +.-+
T Consensus        97 ~~W~  100 (219)
T PF07569_consen   97 GCWI  100 (219)
T ss_pred             ceeE
Confidence            5433

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=92.82  E-value=1.9  Score=37.71  Aligned_cols=80  Identities=18%  Similarity=0.215  Sum_probs=57.4

Q ss_pred             CEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCC----eeEEEEccC--------------CCEE-EEecC
Q 022716          172 GCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWP----VRTISFSHT--------------GDYI-ASASE  232 (293)
Q Consensus       172 ~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~----v~~l~~sp~--------------~~~l-~s~s~  232 (293)
                      .+.++..+|.+++.|+.+.=|.|.++|+.++..++.++++...    +....-...              ..+| +-+-.
T Consensus       309 ~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyapr  388 (415)
T PF14655_consen  309 EGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPR  388 (415)
T ss_pred             eEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEecc
Confidence            4678999999999999888899999999999888888887643    111111111              1233 44566


Q ss_pred             CCcEEEEEcCCCCEEEEEe
Q 022716          233 DLFIDISNVHTGRTVHQIP  251 (293)
Q Consensus       233 d~~i~iw~~~~~~~~~~~~  251 (293)
                      -|.|.||.++.|..+..+.
T Consensus       389 Rg~lEvW~~~~g~Rv~a~~  407 (415)
T PF14655_consen  389 RGILEVWSMRQGPRVAAFN  407 (415)
T ss_pred             CCeEEEEecCCCCEEEEEE
Confidence            7889999998888776554

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=92.67  E-value=0.79  Score=25.65  Aligned_cols=30  Identities=27%  Similarity=0.302  Sum_probs=25.0

Q ss_pred             CeeEEEEccCC---CEEEEecCCCcEEEEEcCC
Q 022716          214 PVRTISFSHTG---DYIASASEDLFIDISNVHT  243 (293)
Q Consensus       214 ~v~~l~~sp~~---~~l~s~s~d~~i~iw~~~~  243 (293)
                      .++++.|||+.   .+|+-+-.-+.|.|+|+++
T Consensus         2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            68899999864   4788877889999999985

It contains a characteristic DLL sequence motif.

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=92.57  E-value=4.1  Score=31.89  Aligned_cols=122  Identities=16%  Similarity=0.236  Sum_probs=67.7

Q ss_pred             CEEEEEeCCCeEEEEeCCCCeee--eeeeecCceEEEEEcCCCCEEEEEeCCC------eEEE---EEcc--ccceeeee
Q 022716           80 DLIATASGDKTVRLWDARSGKCS--QQAELSGENINITYKPDGTHIAVGNRDD------ELTI---LDVR--KFKPIHRR  146 (293)
Q Consensus        80 ~~l~s~~~d~~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~d~------~i~l---~d~~--~~~~~~~~  146 (293)
                      +.|+.+.....|.+|++....+.  ..+..-+.+..+.++..|+++++--++.      .+++   |+..  ...+++.+
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vR  108 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRVR  108 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEEE
Confidence            44444456677999999855443  3444557888999999999999976543      2333   3322  22333333


Q ss_pred             cccceeeeeEEec-CCCEEEEec-CCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCC
Q 022716          147 KFGYEVNEIAWNM-TGEMFFLTT-GNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM  202 (293)
Q Consensus       147 ~~~~~~~~v~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~  202 (293)
                      ..|..+....-.+ ...+..+.- -..++.|++.-|...-|++|+ ++++.||.++..
T Consensus       109 iaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~  165 (215)
T PF14761_consen  109 IAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQ  165 (215)
T ss_pred             EcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEE
Confidence            3332221111001 111222211 134567888878765566665 457899987543

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=92.48  E-value=6  Score=33.59  Aligned_cols=102  Identities=18%  Similarity=0.202  Sum_probs=56.6

Q ss_pred             EEEEEECCCCCEEEEecCCCcEEEEeCCCCEE---EEEee----ccCCCeeEEEEccC---CCEEE-EecCC--------
Q 022716          173 CYCIAIDPMGRYFAVGSADSLVSLWDISEMLC---VRTFT----KLEWPVRTISFSHT---GDYIA-SASED--------  233 (293)
Q Consensus       173 ~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~---~~~~~----~~~~~v~~l~~sp~---~~~l~-s~s~d--------  233 (293)
                      ...+++.|+++.+++ ...|.|++++ ..+..   +..+.    ..+.....++++|+   ..+|. +-+..        
T Consensus         4 P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~   81 (331)
T PF07995_consen    4 PRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND   81 (331)
T ss_dssp             EEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred             ceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence            457889999887765 5599999999 44433   22221    12346789999995   33332 22211        


Q ss_pred             CcEEEEEcCCC-------CE-EEEEec----CCCcceeEECCCCCeEEEEEcCCC
Q 022716          234 LFIDISNVHTG-------RT-VHQIPC----RAAMNSVEWNPKYNLLAYAGDDKN  276 (293)
Q Consensus       234 ~~i~iw~~~~~-------~~-~~~~~~----~~~i~~~~~sp~~~~la~~~~d~~  276 (293)
                      ..|.-|....+       +. +..++.    ...-..|+|.|+|.++++.|+..+
T Consensus        82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~  136 (331)
T PF07995_consen   82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGN  136 (331)
T ss_dssp             EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTT
T ss_pred             eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCC
Confidence            23444443332       11 122232    123456999999998888887765

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=92.47  E-value=4.7  Score=38.05  Aligned_cols=74  Identities=12%  Similarity=0.158  Sum_probs=49.8

Q ss_pred             CEEEEEECCCCCEEEEecCCCcEEEEeCCC---------CE---EEEEe--------eccCCCeeEEEEccC---CCEEE
Q 022716          172 GCYCIAIDPMGRYFAVGSADSLVSLWDISE---------ML---CVRTF--------TKLEWPVRTISFSHT---GDYIA  228 (293)
Q Consensus       172 ~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~---------~~---~~~~~--------~~~~~~v~~l~~sp~---~~~l~  228 (293)
                      .+..|.++|+|+++|..+..|...+.=.+.         +.   ..+++        ......|..+.|+|.   +..|+
T Consensus        86 ~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~  165 (717)
T PF10168_consen   86 EVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLV  165 (717)
T ss_pred             eEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEE
Confidence            466778889999888888766544432211         10   01111        123346889999997   47899


Q ss_pred             EecCCCcEEEEEcCCCC
Q 022716          229 SASEDLFIDISNVHTGR  245 (293)
Q Consensus       229 s~s~d~~i~iw~~~~~~  245 (293)
                      .-..|+++++||+...+
T Consensus       166 vLtsdn~lR~y~~~~~~  182 (717)
T PF10168_consen  166 VLTSDNTLRLYDISDPQ  182 (717)
T ss_pred             EEecCCEEEEEecCCCC
Confidence            99999999999997654

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=92.39  E-value=1.1  Score=24.62  Aligned_cols=40  Identities=15%  Similarity=0.161  Sum_probs=28.2

Q ss_pred             cCCCEEEEe-cCCCcEEEEEcCCCCEEEEEecCCCcceeEE
Q 022716          222 HTGDYIASA-SEDLFIDISNVHTGRTVHQIPCRAAMNSVEW  261 (293)
Q Consensus       222 p~~~~l~s~-s~d~~i~iw~~~~~~~~~~~~~~~~i~~~~~  261 (293)
                      |++++|..+ -.++.|.++|..+++.+..+.....-..+.|
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~   41 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV   41 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence            577766554 4678899999998888877765444445554

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=92.10  E-value=6.3  Score=32.94  Aligned_cols=138  Identities=12%  Similarity=0.155  Sum_probs=68.5

Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEEcccc-ceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEec
Q 022716          111 NINITYKPDGTHIAVGNRDDELTILDVRKF-KPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGS  189 (293)
Q Consensus       111 ~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs  189 (293)
                      ...+...+||++++++...+-+.-||.-.. -..+.+                     .....+.++.|.|++.+.+++ 
T Consensus       147 ~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r---------------------~~~~riq~~gf~~~~~lw~~~-  204 (302)
T PF14870_consen  147 INDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNR---------------------NSSRRIQSMGFSPDGNLWMLA-  204 (302)
T ss_dssp             EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE-----------------------SSS-EEEEEE-TTS-EEEEE-
T ss_pred             eEeEEECCCCcEEEEECcccEEEEecCCCccceEEcc---------------------CccceehhceecCCCCEEEEe-
Confidence            334556788887777765555556664221 111111                     123456788888887776654 


Q ss_pred             CCCcEEEEe-CCCCEEEEE----eeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEec----CCCcceeE
Q 022716          190 ADSLVSLWD-ISEMLCVRT----FTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPC----RAAMNSVE  260 (293)
Q Consensus       190 ~d~~i~iwd-~~~~~~~~~----~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~----~~~i~~~~  260 (293)
                      ..|.|+.=+ ....+.-..    .......+..++|.+++...|+|+... + +.+...|+.-.+...    ...+..|.
T Consensus       205 ~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~-l-~~S~DgGktW~~~~~~~~~~~n~~~i~  282 (302)
T PF14870_consen  205 RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGT-L-LVSTDGGKTWQKDRVGENVPSNLYRIV  282 (302)
T ss_dssp             TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT--E-EEESSTTSS-EE-GGGTTSSS---EEE
T ss_pred             CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCCcc-E-EEeCCCCccceECccccCCCCceEEEE
Confidence            677777776 222222111    111233578899999988888776653 2 333445555444432    23466788


Q ss_pred             ECCCCCeEEEEE
Q 022716          261 WNPKYNLLAYAG  272 (293)
Q Consensus       261 ~sp~~~~la~~~  272 (293)
                      |.+..+-+|.|.
T Consensus       283 f~~~~~gf~lG~  294 (302)
T PF14870_consen  283 FVNPDKGFVLGQ  294 (302)
T ss_dssp             EEETTEEEEE-S
T ss_pred             EcCCCceEEECC
Confidence            877677788775

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=91.90  E-value=1  Score=24.68  Aligned_cols=40  Identities=23%  Similarity=0.312  Sum_probs=27.2

Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCCeeeeeeeecCceEEEEE
Q 022716           77 KHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITY  116 (293)
Q Consensus        77 ~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~  116 (293)
                      ++..++++.-.++.|.++|..+++....+.....+..+++
T Consensus         2 d~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~   41 (42)
T TIGR02276         2 DGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV   41 (42)
T ss_pred             CCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence            4444566666688999999988877776666555555544

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PHA02790 Kelch-like protein; Provisional

Probab=91.75  E-value=9.6  Score=34.30  Aligned_cols=61  Identities=10%  Similarity=0.073  Sum_probs=29.7

Q ss_pred             CCEEEEEeCC--CeEEEEeCCCCeeeeeeeecCceE-EEEEcCCCCEEEEEeCCC---eEEEEEccc
Q 022716           79 ADLIATASGD--KTVRLWDARSGKCSQQAELSGENI-NITYKPDGTHIAVGNRDD---ELTILDVRK  139 (293)
Q Consensus        79 ~~~l~s~~~d--~~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~d~---~i~l~d~~~  139 (293)
                      +.+.+.||.+  ..+..||..+++............ .....-+|+..+.|+.++   .+..||.++
T Consensus       319 ~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~  385 (480)
T PHA02790        319 NKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNH  385 (480)
T ss_pred             CEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCC
Confidence            4566666653  347778876654332222221111 112233566777777543   344555544

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=91.74  E-value=6.2  Score=32.08  Aligned_cols=100  Identities=14%  Similarity=0.088  Sum_probs=61.8

Q ss_pred             CEEEEEECCCCCEEEEec---CCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEE-cCCCCEE
Q 022716          172 GCYCIAIDPMGRYFAVGS---ADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISN-VHTGRTV  247 (293)
Q Consensus       172 ~~~~~~~~~~~~~l~~gs---~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~-~~~~~~~  247 (293)
                      .+.+.+++++++.+|...   ....+.++.....  ..... ....+..-+|++++...+....+....++. ...+...
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~--~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~  101 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP--VRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE  101 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc--ceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence            456788899998776655   3344555554332  22221 122677778999988777766666666663 3344322


Q ss_pred             -EEEe---cCCCcceeEECCCCCeEEEEEcC
Q 022716          248 -HQIP---CRAAMNSVEWNPKYNLLAYAGDD  274 (293)
Q Consensus       248 -~~~~---~~~~i~~~~~sp~~~~la~~~~d  274 (293)
                       ....   ....|.++.+||||..+|.-..+
T Consensus       102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~  132 (253)
T PF10647_consen  102 PVEVDWPGLRGRITALRVSPDGTRVAVVVED  132 (253)
T ss_pred             eEEecccccCCceEEEEECCCCcEEEEEEec
Confidence             1222   12279999999999998887743

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=91.74  E-value=1.8  Score=34.33  Aligned_cols=87  Identities=9%  Similarity=0.022  Sum_probs=52.7

Q ss_pred             eecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeee-cccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCE
Q 022716          106 ELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRR-KFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRY  184 (293)
Q Consensus       106 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (293)
                      .....+..  +..++.+|++.+.+|.+++||+++.+..... ....-+....  ..+.     .....+..+.++.+|.-
T Consensus        10 ~Lgs~~~~--l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~--~~~~-----~~~~~i~~~~lt~~G~P   80 (219)
T PF07569_consen   10 VLGSPVSF--LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSP--VSDK-----SSSPNITSCSLTSNGVP   80 (219)
T ss_pred             ecCCceEE--EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccc--cccC-----CCCCcEEEEEEcCCCCE
Confidence            33444433  3456789999999999999999887654332 1000000000  0000     33456778888888887


Q ss_pred             EEEecCCCcEEEEeCCCC
Q 022716          185 FAVGSADSLVSLWDISEM  202 (293)
Q Consensus       185 l~~gs~d~~i~iwd~~~~  202 (293)
                      +++-+ +|....|+..-+
T Consensus        81 iV~ls-ng~~y~y~~~L~   97 (219)
T PF07569_consen   81 IVTLS-NGDSYSYSPDLG   97 (219)
T ss_pred             EEEEe-CCCEEEeccccc
Confidence            77655 578899986544

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PRK13684 Ycf48-like protein; Provisional

Probab=91.26  E-value=8.5  Score=32.76  Aligned_cols=98  Identities=15%  Similarity=0.170  Sum_probs=56.6

Q ss_pred             CCEEEEEECCCCCEEEEecCCCcEEE-EeCC--CCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEE
Q 022716          171 AGCYCIAIDPMGRYFAVGSADSLVSL-WDIS--EMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTV  247 (293)
Q Consensus       171 ~~~~~~~~~~~~~~l~~gs~d~~i~i-wd~~--~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~  247 (293)
                      ..+..+.+.|++.++++|. .|.+.. +|-.  +...+  .......+.++.+.|+++.++.| ..|.+.+-+...|..-
T Consensus       173 g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~gg~tW~~~--~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW  248 (334)
T PRK13684        173 GVVRNLRRSPDGKYVAVSS-RGNFYSTWEPGQTAWTPH--QRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESW  248 (334)
T ss_pred             ceEEEEEECCCCeEEEEeC-CceEEEEcCCCCCeEEEe--eCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcc
Confidence            3456788888887766654 454432 2221  12222  12334678999999999877664 5577655434444332


Q ss_pred             EE--Ee---cCCCcceeEECCCCCeEEEEE
Q 022716          248 HQ--IP---CRAAMNSVEWNPKYNLLAYAG  272 (293)
Q Consensus       248 ~~--~~---~~~~i~~~~~sp~~~~la~~~  272 (293)
                      ..  .+   ....+.++.++|++..++.+.
T Consensus       249 ~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~  278 (334)
T PRK13684        249 SKPIIPEITNGYGYLDLAYRTPGEIWAGGG  278 (334)
T ss_pred             ccccCCccccccceeeEEEcCCCCEEEEcC
Confidence            21  11   112467888999877666554

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=90.71  E-value=0.031  Score=48.43  Aligned_cols=141  Identities=14%  Similarity=0.222  Sum_probs=88.0

Q ss_pred             EEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEE-EeCCCeEEEEEccccceeeeecccce
Q 022716           73 CWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAV-GNRDDELTILDVRKFKPIHRRKFGYE  151 (293)
Q Consensus        73 ~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~d~~i~l~d~~~~~~~~~~~~~~~  151 (293)
                      .|-|++.++ +-++.+-.+..||-. ++........+....++|..++..+++ +-..+.+.+||+.+....+ ...+. 
T Consensus        41 ~w~~e~~nl-avaca~tiv~~YD~a-gq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqq-LE~gg-  116 (615)
T KOG2247|consen   41 RWRPEGHNL-AVACANTIVIYYDKA-GQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQ-LESGG-  116 (615)
T ss_pred             eEecCCCce-ehhhhhhHHHhhhhh-cceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHH-HhccC-
Confidence            566776664 456667777788743 333333334555667888887765544 4567899999987533211 11110 


Q ss_pred             eeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEec
Q 022716          152 VNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASAS  231 (293)
Q Consensus       152 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s  231 (293)
                                        ...-.-+.|++....++.|...|.+.|++....+.+-..-.|...+..+++.+.+. .+.++
T Consensus       117 ------------------~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~-vil~d  177 (615)
T KOG2247|consen  117 ------------------TSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDY-VILCD  177 (615)
T ss_pred             ------------------cchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccce-eeecC
Confidence                              00001246677788888898999999999877655544434777889999988764 44555


Q ss_pred             CCCcE
Q 022716          232 EDLFI  236 (293)
Q Consensus       232 ~d~~i  236 (293)
                      .|..+
T Consensus       178 cd~~L  182 (615)
T KOG2247|consen  178 CDNTL  182 (615)
T ss_pred             cHHHH
Confidence            55444

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=90.57  E-value=2.3  Score=41.27  Aligned_cols=144  Identities=13%  Similarity=0.165  Sum_probs=85.1

Q ss_pred             ccEEEEEECCCCCeEEEE--eCCCcEEEeecCCCCCCceeE-EEeeCC------cCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716           21 KKVHSVAWNCTGTKLASG--SVDQTARVWHIEPHGHGKVKD-IELRGH------ADSVDQLCWDPKHADLIATASGDKTV   91 (293)
Q Consensus        21 ~~v~~l~~s~~~~~l~s~--~~dg~v~iw~~~~~~~~~~~~-~~~~~h------~~~i~~~~~~~~~~~~l~s~~~d~~i   91 (293)
                      -+|..+..++|+...+.-  +.+-.|..||+..-....... ..+..|      .....++.|+|.-....+.+..|+.|
T Consensus       101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl  180 (1405)
T KOG3630|consen  101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL  180 (1405)
T ss_pred             ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence            466677777887665443  334478889986533222111 112222      12345678888765556667788888


Q ss_pred             EEEeCCCCe-eeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEcccc--ceeeeec--ccceeeeeEEecCCCEE
Q 022716           92 RLWDARSGK-CSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKF--KPIHRRK--FGYEVNEIAWNMTGEMF  164 (293)
Q Consensus        92 ~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~--~~~~~~~--~~~~~~~v~~~~~~~~~  164 (293)
                      ++..+.... ....+.......+++|+|.|+++++|...|++.-|-..-.  ..+....  -...+.+|.|-...+.+
T Consensus       181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~efl  258 (1405)
T KOG3630|consen  181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFL  258 (1405)
T ss_pred             hhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecceeEE
Confidence            887654322 1222344556778999999999999999999888764322  1111111  13456777775544433

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.38  E-value=9  Score=31.58  Aligned_cols=103  Identities=17%  Similarity=0.181  Sum_probs=72.9

Q ss_pred             CEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeecc-CCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEE--
Q 022716          172 GCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL-EWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVH--  248 (293)
Q Consensus       172 ~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~-~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~--  248 (293)
                      .+.++.++|+.+.|.+......-.++=...|..++++.-. -....+|.+.-+|+++++--.++.+++..+.....+.  
T Consensus        87 nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~  166 (316)
T COG3204          87 NVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISA  166 (316)
T ss_pred             cccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEec
Confidence            3678899999998888888887777766777777765321 2356778888899999888899999988877653211  


Q ss_pred             ---EEecCC------CcceeEECCCCCeEEEEEcC
Q 022716          249 ---QIPCRA------AMNSVEWNPKYNLLAYAGDD  274 (293)
Q Consensus       249 ---~~~~~~------~i~~~~~sp~~~~la~~~~d  274 (293)
                         .++...      ..-.++|.|....|..+-..
T Consensus       167 ~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr  201 (316)
T COG3204         167 KVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKER  201 (316)
T ss_pred             cceEEeccccCCCCcCceeeecCCCCceEEEEEcc
Confidence               222221      23469999988877777543

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=90.04  E-value=15  Score=33.54  Aligned_cols=75  Identities=12%  Similarity=0.190  Sum_probs=46.1

Q ss_pred             CcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEecCCCcce--eEECCCCCe
Q 022716          192 SLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNS--VEWNPKYNL  267 (293)
Q Consensus       192 ~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~i~~--~~~sp~~~~  267 (293)
                      |.|.-+|+.+++.+=..... .+...-...-.+..++.++.||.++.+|.++|+.+........+.+  +.|.-+|++
T Consensus       441 g~l~AiD~~tGk~~W~~~~~-~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~~~~a~P~ty~~~G~q  517 (527)
T TIGR03075       441 GSLIAWDPITGKIVWEHKED-FPLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTGSGIVGPPVTYEQDGKQ  517 (527)
T ss_pred             eeEEEEeCCCCceeeEecCC-CCCCCcceEECCcEEEEECCCCeEEEEECCCCCEeEEEeCCCCceecCEEEEeCCEE
Confidence            45777787777654333211 1211111222455777788899999999999999887766554433  444456644

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=90.00  E-value=15  Score=33.47  Aligned_cols=148  Identities=18%  Similarity=0.270  Sum_probs=81.3

Q ss_pred             ccEEEEEECCCCCeEE-EEe--CCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCC---CCEEEEEeCCCeEEEE
Q 022716           21 KKVHSVAWNCTGTKLA-SGS--VDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKH---ADLIATASGDKTVRLW   94 (293)
Q Consensus        21 ~~v~~l~~s~~~~~l~-s~~--~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~---~~~l~s~~~d~~i~vw   94 (293)
                      .+|+.++|. ||++++ |.-  .+|.+++=|           ...-|+-..|..+.|.|-.   .--|+.......|.||
T Consensus        20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd-----------s~viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVW   87 (671)
T PF15390_consen   20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD-----------SKVIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVW   87 (671)
T ss_pred             ccccceEec-CCCEEEEEeeeeeCCccccCC-----------ccEeeccceeeeeeecCcccCCCCceEEEeccceEEEE
Confidence            589999997 787764 432  233333211           1123455668899998853   1134456778889999


Q ss_pred             eCCCC-----ee--eeeeeecC----ceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCE
Q 022716           95 DARSG-----KC--SQQAELSG----ENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEM  163 (293)
Q Consensus        95 d~~~~-----~~--~~~~~~~~----~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~  163 (293)
                      -+...     +.  .+..+...    -+..+.|+|....|++=+....-.+.+.+.....-                   
T Consensus        88 qL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srV-------------------  148 (671)
T PF15390_consen   88 QLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRV-------------------  148 (671)
T ss_pred             EeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceE-------------------
Confidence            87522     21  12223322    24468899988877766654444444443221100                   


Q ss_pred             EEEecCCCCEEEEEECCCCCEEEEe-cCCCcEEEEeC
Q 022716          164 FFLTTGNAGCYCIAIDPMGRYFAVG-SADSLVSLWDI  199 (293)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~l~~g-s~d~~i~iwd~  199 (293)
                      ..-....+.|.|.+|.+||+.|+++ ++.=.-++||-
T Consensus       149 kaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~  185 (671)
T PF15390_consen  149 KADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDS  185 (671)
T ss_pred             EEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence            0011234456677777777665544 22334566764

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.80  E-value=20  Score=35.54  Aligned_cols=31  Identities=16%  Similarity=0.216  Sum_probs=27.0

Q ss_pred             ccccEEEEEECCCCCeEEEEeCCCcEEEeec
Q 022716           19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHI   49 (293)
Q Consensus        19 h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~   49 (293)
                      -......++|+|..+.+|.|...|.|+++-.
T Consensus        34 ~~~~~~~~afD~~q~llai~t~tg~i~~yg~   64 (993)
T KOG1983|consen   34 FPSTPSALAFDPTQGLLAIGTRTGAIKIYGQ   64 (993)
T ss_pred             CCCCCcceeeccccceEEEEEecccEEEecc
Confidence            3457788999999999999999999999864

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=89.57  E-value=16  Score=33.25  Aligned_cols=148  Identities=14%  Similarity=0.177  Sum_probs=78.1

Q ss_pred             CeeEEEEcCCCCCEEEEEe--CCCeEEEEeCCCCeeeeeeeecCceEEEEEcCCC----CEEEEEeCCCeEEEEEcccc-
Q 022716           68 SVDQLCWDPKHADLIATAS--GDKTVRLWDARSGKCSQQAELSGENINITYKPDG----THIAVGNRDDELTILDVRKF-  140 (293)
Q Consensus        68 ~i~~~~~~~~~~~~l~s~~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~d~~i~l~d~~~~-  140 (293)
                      ++..++|. ++..+++|.-  .+|.+++=|.   ..   +.-..++..+.|.|-+    ..+++......+.+|.+.-. 
T Consensus        21 PvhGlaWT-DGkqVvLT~L~l~~gE~kfGds---~v---iGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~   93 (671)
T PF15390_consen   21 PVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS---KV---IGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPST   93 (671)
T ss_pred             cccceEec-CCCEEEEEeeeeeCCccccCCc---cE---eeccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCc
Confidence            57788885 4445555542  1233322111   11   1223456778888753    25666667888999987421 


Q ss_pred             ----ceeee----e--cccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCC-CCEEEEEee
Q 022716          141 ----KPIHR----R--KFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDIS-EMLCVRTFT  209 (293)
Q Consensus       141 ----~~~~~----~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~-~~~~~~~~~  209 (293)
                          +.+..    .  .++.-.+.++|                     ||....|++-+....-.+++.. +..+++.-.
T Consensus        94 ~e~~K~l~sQtcEi~e~~pvLpQGCVW---------------------HPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi  152 (671)
T PF15390_consen   94 TERNKLLMSQTCEIREPFPVLPQGCVW---------------------HPKKAILTVLTARDVSVLPSVHCDSSRVKADI  152 (671)
T ss_pred             cccccceeeeeeeccCCcccCCCcccc---------------------cCCCceEEEEecCceeEeeeeeeCCceEEEec
Confidence                11110    0  01112233444                     4554444444443333344442 222333333


Q ss_pred             ccCCCeeEEEEccCCCEEEEe-cCCCcEEEEEcCC
Q 022716          210 KLEWPVRTISFSHTGDYIASA-SEDLFIDISNVHT  243 (293)
Q Consensus       210 ~~~~~v~~l~~sp~~~~l~s~-s~d~~i~iw~~~~  243 (293)
                      ...+.|.+-+|.+||+.|+.+ +..-.-+|||-..
T Consensus       153 ~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q  187 (671)
T PF15390_consen  153 KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ  187 (671)
T ss_pred             cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence            456789999999999887555 3445578998653

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=89.54  E-value=3  Score=38.12  Aligned_cols=76  Identities=16%  Similarity=0.243  Sum_probs=43.3

Q ss_pred             CCCCeEEEEeCCCcEEEeecCCCC-CCc-eeEEEeeC--------------------CcCCeeEEEEcC---CCCCEEEE
Q 022716           30 CTGTKLASGSVDQTARVWHIEPHG-HGK-VKDIELRG--------------------HADSVDQLCWDP---KHADLIAT   84 (293)
Q Consensus        30 ~~~~~l~s~~~dg~v~iw~~~~~~-~~~-~~~~~~~~--------------------h~~~i~~~~~~~---~~~~~l~s   84 (293)
                      ++...++.+..||.+...+..... .+. .....+..                    -......++.++   .+..++++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            366788888899998888765411 011 11110000                    012234444444   24578999


Q ss_pred             EeCCCeEEEEeCCCCeeeeee
Q 022716           85 ASGDKTVRLWDARSGKCSQQA  105 (293)
Q Consensus        85 ~~~d~~i~vwd~~~~~~~~~~  105 (293)
                      .+.|+.+|+||+.+++++...
T Consensus       236 l~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             EETTSEEEEEETTTTCEEEEE
T ss_pred             EeCCCeEEEEECCCCeEEEEe
Confidence            999999999999999986554

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=89.37  E-value=2  Score=23.15  Aligned_cols=30  Identities=17%  Similarity=0.203  Sum_probs=19.9

Q ss_pred             CccccEEEEEECCCCCeEEEEeC-C--CcEEEe
Q 022716           18 GHKKKVHSVAWNCTGTKLASGSV-D--QTARVW   47 (293)
Q Consensus        18 ~h~~~v~~l~~s~~~~~l~s~~~-d--g~v~iw   47 (293)
                      -....-....|||||+.|+-.+. +  |.-.||
T Consensus         6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            34557788999999999875554 4  555554

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=89.15  E-value=9.2  Score=29.92  Aligned_cols=105  Identities=15%  Similarity=0.196  Sum_probs=58.8

Q ss_pred             CCCeEEEEeC--CCcEEEeecCCCCCCceeEEEeeCCc---CCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeee
Q 022716           31 TGTKLASGSV--DQTARVWHIEPHGHGKVKDIELRGHA---DSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQA  105 (293)
Q Consensus        31 ~~~~l~s~~~--dg~v~iw~~~~~~~~~~~~~~~~~h~---~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~  105 (293)
                      +|..+.+.+.  ...|++||++...  ...+..+...+   ..++.+     +..+..-.-.+|...++|.++-++...+
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq--~~~s~~l~~~~~FgEGit~~-----gd~~y~LTw~egvaf~~d~~t~~~lg~~  127 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQ--EIFSEKLAPDTVFGEGITKL-----GDYFYQLTWKEGVAFKYDADTLEELGRF  127 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCce--EEEEeecCCccccccceeec-----cceEEEEEeccceeEEEChHHhhhhccc
Confidence            4566777666  3478889987432  11222222100   111111     1122222344677788888887777776


Q ss_pred             eecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceee
Q 022716          106 ELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIH  144 (293)
Q Consensus       106 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~  144 (293)
                      ...+.-..++  .|++.|+.+....++..-|.+++....
T Consensus       128 ~y~GeGWgLt--~d~~~LimsdGsatL~frdP~tfa~~~  164 (262)
T COG3823         128 SYEGEGWGLT--SDDKNLIMSDGSATLQFRDPKTFAELD  164 (262)
T ss_pred             ccCCcceeee--cCCcceEeeCCceEEEecCHHHhhhcc
Confidence            6666655554  456667776666677777777665433

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=88.85  E-value=9.5  Score=33.44  Aligned_cols=89  Identities=12%  Similarity=0.112  Sum_probs=53.8

Q ss_pred             eecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCC-eeEEEE------------c----CC
Q 022716           15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADS-VDQLCW------------D----PK   77 (293)
Q Consensus        15 ~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~-i~~~~~------------~----~~   77 (293)
                      .+...+..+.+++.+|.+++.|+...=|.|.++|+.....-+    -++|..+. +..+..            .    +.
T Consensus       302 ~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvr----mWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~  377 (415)
T PF14655_consen  302 GLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVR----MWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSR  377 (415)
T ss_pred             eeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhh----hhccCccceEEEEEeecccccccccccccCCCCc
Confidence            356667789999999999988888888999999986432111    11221111 000000            0    00


Q ss_pred             C-CCEEEEEeCCCeEEEEeCCCCeeeeeeee
Q 022716           78 H-ADLIATASGDKTVRLWDARSGKCSQQAEL  107 (293)
Q Consensus        78 ~-~~~l~s~~~d~~i~vwd~~~~~~~~~~~~  107 (293)
                      . --+++-+-.-|.|-||.++++..+..+..
T Consensus       378 ~~l~LvIyaprRg~lEvW~~~~g~Rv~a~~v  408 (415)
T PF14655_consen  378 FALFLVIYAPRRGILEVWSMRQGPRVAAFNV  408 (415)
T ss_pred             ceEEEEEEeccCCeEEEEecCCCCEEEEEEe
Confidence            0 01334455678899999998887665543

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=88.74  E-value=12  Score=30.78  Aligned_cols=155  Identities=14%  Similarity=0.213  Sum_probs=89.7

Q ss_pred             EEEEcCCCCCEEEEEeCCCe-EEEEeCCCCeeeeeeeec-C-ceE-EEEEcCCCCEEEEEeC-----CCeEEEEEcccc-
Q 022716           71 QLCWDPKHADLIATASGDKT-VRLWDARSGKCSQQAELS-G-ENI-NITYKPDGTHIAVGNR-----DDELTILDVRKF-  140 (293)
Q Consensus        71 ~~~~~~~~~~~l~s~~~d~~-i~vwd~~~~~~~~~~~~~-~-~~~-~~~~~~~~~~l~~~~~-----d~~i~l~d~~~~-  140 (293)
                      .+.++|....-++-+-.-|+ ..++|....+....+... + +.. .-.|+|||.+|...-.     -|.|-+||.+.. 
T Consensus        72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~f  151 (366)
T COG3490          72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGF  151 (366)
T ss_pred             CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccccc
Confidence            45566655444444544444 357788776654433211 1 111 2468999999887654     357889998742 


Q ss_pred             ceeeee-cccceeeeeEEecCCCEEEEecCCCCEEEEEECCCC--CEEEEecCCCcEEEEeCCCCEEEEEe--e--ccCC
Q 022716          141 KPIHRR-KFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMG--RYFAVGSADSLVSLWDISEMLCVRTF--T--KLEW  213 (293)
Q Consensus       141 ~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~gs~d~~i~iwd~~~~~~~~~~--~--~~~~  213 (293)
                      ..+.+. .++.....+.|.++|+.+.+..+.     |..+|+.  ..|=.-+++-++.+.|..++..+.+.  .  -+..
T Consensus       152 qrvgE~~t~GiGpHev~lm~DGrtlvvanGG-----IethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~l  226 (366)
T COG3490         152 QRVGEFSTHGIGPHEVTLMADGRTLVVANGG-----IETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQL  226 (366)
T ss_pred             ceecccccCCcCcceeEEecCCcEEEEeCCc-----eecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhc
Confidence            222222 245667778888888877766553     2334432  12333445556677776666655432  2  2344


Q ss_pred             CeeEEEEccCCCEEEEe
Q 022716          214 PVRTISFSHTGDYIASA  230 (293)
Q Consensus       214 ~v~~l~~sp~~~~l~s~  230 (293)
                      .++.++.-+||+.++-+
T Consensus       227 SiRHld~g~dgtvwfgc  243 (366)
T COG3490         227 SIRHLDIGRDGTVWFGC  243 (366)
T ss_pred             ceeeeeeCCCCcEEEEE
Confidence            68888888888766554

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=88.66  E-value=24  Score=34.15  Aligned_cols=265  Identities=14%  Similarity=0.155  Sum_probs=131.2

Q ss_pred             ccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCC--CCC---EEEEEeCCCeEEEEe
Q 022716           21 KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK--HAD---LIATASGDKTVRLWD   95 (293)
Q Consensus        21 ~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~--~~~---~l~s~~~d~~i~vwd   95 (293)
                      ..++....+.+..+++.++.++.+-..+.+...   .....-..-+..|.|+.++|.  .++   +++.|.++..+.+--
T Consensus       488 ~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~---l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~  564 (1096)
T KOG1897|consen  488 GKITIGVVSANASQVVVAGGGLALFYLEIEDGG---LREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILT  564 (1096)
T ss_pred             CceEEEEEeecceEEEEecCccEEEEEEeeccc---eeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEE
Confidence            345555555556677777776766666665432   111111122456888888875  333   788888877665543


Q ss_pred             C-CCCeeeeeeeecC--ceEE---EEEcCCCCEEEEEeCCCeEEEEEc--cccceeeee--cccce-eeeeEEecCCCEE
Q 022716           96 A-RSGKCSQQAELSG--ENIN---ITYKPDGTHIAVGNRDDELTILDV--RKFKPIHRR--KFGYE-VNEIAWNMTGEMF  164 (293)
Q Consensus        96 ~-~~~~~~~~~~~~~--~~~~---~~~~~~~~~l~~~~~d~~i~l~d~--~~~~~~~~~--~~~~~-~~~v~~~~~~~~~  164 (293)
                      . .+...........  .+.+   ..+--|..+|.++..||.+..+-+  .+......+  .+|.. +.-..++..+...
T Consensus       565 ~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~  644 (1096)
T KOG1897|consen  565 FLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTA  644 (1096)
T ss_pred             ECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceE
Confidence            3 2322222222222  2333   344456789999999998876644  333221111  12211 1111122222111


Q ss_pred             EEecCCCCE--E----EEE--------------EC-CC-CCEEEEecCCCcEEEEeCCCCE--EEEEeeccCCCeeEEEE
Q 022716          165 FLTTGNAGC--Y----CIA--------------ID-PM-GRYFAVGSADSLVSLWDISEML--CVRTFTKLEWPVRTISF  220 (293)
Q Consensus       165 ~~~~~~~~~--~----~~~--------------~~-~~-~~~l~~gs~d~~i~iwd~~~~~--~~~~~~~~~~~v~~l~~  220 (293)
                      .+.+.+-+.  +    .+.              |+ +. ...+++++ .+.+.+..+..-.  -++++ ....+++.+++
T Consensus       645 vfa~sdrP~viY~~n~kLv~spls~kev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtv-pl~~~prrI~~  722 (1096)
T KOG1897|consen  645 VFALSDRPTVIYSSNGKLVYSPLSLKEVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTV-PLGESPRRICY  722 (1096)
T ss_pred             EEEeCCCCEEEEecCCcEEEeccchHHhhhhcccccccCCceEEEec-CCceEEEEecchhhcceeee-cCCCChhheEe
Confidence            111111110  0    011              11 11 23344443 4567777655422  23333 23346778888


Q ss_pred             ccCCCEEEEecC-----------C---CcEEEEEcCCCCEEEEEec-----CCCcceeEECCC-CCeEEEEEcCCCCCCC
Q 022716          221 SHTGDYIASASE-----------D---LFIDISNVHTGRTVHQIPC-----RAAMNSVEWNPK-YNLLAYAGDDKNKYQA  280 (293)
Q Consensus       221 sp~~~~l~s~s~-----------d---~~i~iw~~~~~~~~~~~~~-----~~~i~~~~~sp~-~~~la~~~~d~~~~~~  280 (293)
                      .+....+.+.+.           .   ..++++|-++.+.++..+.     .-+|.++.|..| +.++++|..-  +|..
T Consensus       723 q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~--v~Pd  800 (1096)
T KOG1897|consen  723 QESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGL--VYPD  800 (1096)
T ss_pred             cccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEe--eccC
Confidence            875555444332           1   1356777777665543322     235777889887 6777777632  2322


Q ss_pred             ----CcceEEEEeeec
Q 022716          281 ----DEGVFRIYGFEN  292 (293)
Q Consensus       281 ----~~~~~~~~~~~~  292 (293)
                          ..|-+-||.||.
T Consensus       801 e~ep~~GRIivfe~~e  816 (1096)
T KOG1897|consen  801 ENEPVNGRIIVFEFEE  816 (1096)
T ss_pred             CCCcccceEEEEEEec
Confidence                236666777764

>PHA02790 Kelch-like protein; Provisional

Probab=87.51  E-value=21  Score=32.12  Aligned_cols=101  Identities=7%  Similarity=-0.016  Sum_probs=51.9

Q ss_pred             CCCEEEEecCCC---cEEEEeCCCCEEEEE--eeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEE--EEEec-
Q 022716          181 MGRYFAVGSADS---LVSLWDISEMLCVRT--FTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTV--HQIPC-  252 (293)
Q Consensus       181 ~~~~l~~gs~d~---~i~iwd~~~~~~~~~--~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~--~~~~~-  252 (293)
                      ++++.+.|+.++   .+..||.++..-...  +.......  .+..-+++..+.|+   .+.++|..+.+-.  ..++. 
T Consensus       362 ~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~--~~~~~~~~IYv~GG---~~e~ydp~~~~W~~~~~m~~~  436 (480)
T PHA02790        362 NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS--CALVFGRRLFLVGR---NAEFYCESSNTWTLIDDPIYP  436 (480)
T ss_pred             CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc--eEEEECCEEEEECC---ceEEecCCCCcEeEcCCCCCC
Confidence            577777777553   477888765433221  11111111  11234566666664   4677888765432  22222 


Q ss_pred             CCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeee
Q 022716          253 RAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE  291 (293)
Q Consensus       253 ~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~  291 (293)
                      +.....+..  ++.+++.||.++...   ...+.+|+.+
T Consensus       437 r~~~~~~v~--~~~IYviGG~~~~~~---~~~ve~Yd~~  470 (480)
T PHA02790        437 RDNPELIIV--DNKLLLIGGFYRGSY---IDTIEVYNNR  470 (480)
T ss_pred             ccccEEEEE--CCEEEEECCcCCCcc---cceEEEEECC
Confidence            112222223  678899998764322   1356677665

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=87.32  E-value=3.1  Score=22.37  Aligned_cols=32  Identities=25%  Similarity=0.197  Sum_probs=20.0

Q ss_pred             eeccCCCeeEEEEccCCCEEEEec-CC--CcEEEE
Q 022716          208 FTKLEWPVRTISFSHTGDYIASAS-ED--LFIDIS  239 (293)
Q Consensus       208 ~~~~~~~v~~l~~sp~~~~l~s~s-~d--~~i~iw  239 (293)
                      +......-..-.|||||++|+-.+ .+  |.-.||
T Consensus         4 ~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    4 LTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             ES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             cccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            334455677789999999886665 44  555554

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=86.86  E-value=13  Score=29.10  Aligned_cols=170  Identities=12%  Similarity=0.138  Sum_probs=82.7

Q ss_pred             CCEEEEEeC--CCeEEEEeCCCCeeeeeeeecC-ceEEEEEcCCCCEE-EEEeCCCeEEEEEccccceeeeecccceeee
Q 022716           79 ADLIATASG--DKTVRLWDARSGKCSQQAELSG-ENINITYKPDGTHI-AVGNRDDELTILDVRKFKPIHRRKFGYEVNE  154 (293)
Q Consensus        79 ~~~l~s~~~--d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~l-~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~  154 (293)
                      +.++.|.+.  ...|++||+.+++......... .+..=-...-|..+ ...-.++.-..+|.++.+.+.+..+..+-+.
T Consensus        56 g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeGWg  135 (262)
T COG3823          56 GHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEGWG  135 (262)
T ss_pred             CEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCccee
Confidence            456666655  5669999999888766544441 11110011112222 2223467777788888776666544333221


Q ss_pred             eEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeec--cCC---CeeEEEEccCCCEEEE
Q 022716          155 IAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK--LEW---PVRTISFSHTGDYIAS  229 (293)
Q Consensus       155 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~--~~~---~v~~l~~sp~~~~l~s  229 (293)
                      +                       ..++.-|+.++...+++.-|.++.....+..-  ...   .++.+.| -+|...|-
T Consensus       136 L-----------------------t~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~-VdG~lyAN  191 (262)
T COG3823         136 L-----------------------TSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEW-VDGELYAN  191 (262)
T ss_pred             e-----------------------ecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceee-eccEEEEe
Confidence            1                       12333344444444555556554332222111  111   1223333 23433333


Q ss_pred             ecCCCcEEEEEcCCCCEEEEEec-------------CCCcceeEECCCCCeEEEEE
Q 022716          230 ASEDLFIDISNVHTGRTVHQIPC-------------RAAMNSVEWNPKYNLLAYAG  272 (293)
Q Consensus       230 ~s~d~~i~iw~~~~~~~~~~~~~-------------~~~i~~~~~sp~~~~la~~~  272 (293)
                      .=.+..|-.-+.++|+.+.-+..             ..-.|.|++-|++..|...|
T Consensus       192 Vw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         192 VWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             eeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence            33334444445566655433321             12357899999886665555

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=86.54  E-value=14  Score=32.29  Aligned_cols=96  Identities=16%  Similarity=0.184  Sum_probs=56.3

Q ss_pred             EEEEECCCCCEEEEecCCCcEEEEeCCC--CEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCC-----E
Q 022716          174 YCIAIDPMGRYFAVGSADSLVSLWDISE--MLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGR-----T  246 (293)
Q Consensus       174 ~~~~~~~~~~~l~~gs~d~~i~iwd~~~--~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~-----~  246 (293)
                      ..+...+++.+++.|..-..++-||--.  ...+.  ......+.++.+.+++..++.+ .+|.+..- ...++     .
T Consensus       242 ~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~--~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~S-~d~G~~~~~~~  317 (398)
T PLN00033        242 STVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHN--RASARRIQNMGWRADGGLWLLT-RGGGLYVS-KGTGLTEEDFD  317 (398)
T ss_pred             eeEEEcCCCCEEEEECCccEEEecCCCCcceEEec--CCCccceeeeeEcCCCCEEEEe-CCceEEEe-cCCCCcccccc
Confidence            3455678888777776544344454322  12221  2234568999999999887665 55555443 33332     2


Q ss_pred             EEEEec---CCCcceeEECCCCCeEEEEEc
Q 022716          247 VHQIPC---RAAMNSVEWNPKYNLLAYAGD  273 (293)
Q Consensus       247 ~~~~~~---~~~i~~~~~sp~~~~la~~~~  273 (293)
                      ......   ...+.++.|.++++.+++|..
T Consensus       318 f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~  347 (398)
T PLN00033        318 FEEADIKSRGFGILDVGYRSKKEAWAAGGS  347 (398)
T ss_pred             eeecccCCCCcceEEEEEcCCCcEEEEECC
Confidence            222222   234788999998888777764

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=86.52  E-value=22  Score=31.30  Aligned_cols=58  Identities=16%  Similarity=0.076  Sum_probs=35.2

Q ss_pred             CEEEEEeCCCeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 022716           80 DLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDV  137 (293)
Q Consensus        80 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~  137 (293)
                      +++..=+-||.+.+++-+.--....+...-.+-.+.|.+.-..+++++++..+..+..
T Consensus       146 ~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~sss~~l~~Yky  203 (418)
T PF14727_consen  146 DFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASSSWTLECYKY  203 (418)
T ss_pred             eEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecCceeEEEecH
Confidence            4455556677777776543322222222222345777787788999988888888754

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=86.21  E-value=24  Score=31.44  Aligned_cols=31  Identities=6%  Similarity=0.155  Sum_probs=23.6

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCeEEEEEccc
Q 022716          109 GENINITYKPDGTHIAVGNRDDELTILDVRK  139 (293)
Q Consensus       109 ~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~  139 (293)
                      ..+..|+|.|||+.|++-...|+|++++..+
T Consensus        30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~   60 (454)
T TIGR03606        30 NKPWALLWGPDNQLWVTERATGKILRVNPET   60 (454)
T ss_pred             CCceEEEEcCCCeEEEEEecCCEEEEEeCCC
Confidence            3567899999997776665469999987554

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=85.13  E-value=34  Score=32.26  Aligned_cols=120  Identities=12%  Similarity=0.117  Sum_probs=68.1

Q ss_pred             CCCEEEEEeCCCeEEEEEccccce-eeeecccceeeeeEEe-cCCCEEEEecCCCCEEEEEEC--CCCCEEEEecCCCcE
Q 022716          119 DGTHIAVGNRDDELTILDVRKFKP-IHRRKFGYEVNEIAWN-MTGEMFFLTTGNAGCYCIAID--PMGRYFAVGSADSLV  194 (293)
Q Consensus       119 ~~~~l~~~~~d~~i~l~d~~~~~~-~~~~~~~~~~~~v~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~gs~d~~i  194 (293)
                      ....|+.+..||.|.+|.++.-.. +....-  +.... .+ ..-...+...-...++.++++  ...+++|+++....|
T Consensus       113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~--~~~~~-~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~V  189 (717)
T PF08728_consen  113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSE--DNDSG-FSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEV  189 (717)
T ss_pred             CeeEEEEEecCCeEEEEEHHHHHHHHHhhcc--ccccc-cccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceE
Confidence            345678888899999997643110 000000  00000 00 000001222233467788988  888999999999989


Q ss_pred             EEEeCCCC-EEEEEe--eccCCCeeEEEEccCC-----C-EEEEecCCCcEEEEEc
Q 022716          195 SLWDISEM-LCVRTF--TKLEWPVRTISFSHTG-----D-YIASASEDLFIDISNV  241 (293)
Q Consensus       195 ~iwd~~~~-~~~~~~--~~~~~~v~~l~~sp~~-----~-~l~s~s~d~~i~iw~~  241 (293)
                      .+|-.... ......  ..+.--|.+|+|-++.     . +|++++=.|.+.+|++
T Consensus       190 TVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  190 TVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            88854331 111111  1234468899997653     2 7888888999888777

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=85.01  E-value=18  Score=28.94  Aligned_cols=98  Identities=13%  Similarity=0.163  Sum_probs=60.1

Q ss_pred             EEEECCCCCE-EEEecCCCcEEEEe--CCCCE-----EEEEeecc---C-CCeeEEEEccCCCEEEEecCCCcEEEEEcC
Q 022716          175 CIAIDPMGRY-FAVGSADSLVSLWD--ISEML-----CVRTFTKL---E-WPVRTISFSHTGDYIASASEDLFIDISNVH  242 (293)
Q Consensus       175 ~~~~~~~~~~-l~~gs~d~~i~iwd--~~~~~-----~~~~~~~~---~-~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~  242 (293)
                      .++|+.+.+. ..+-+.+-+|.-||  +.++.     .+..++..   + .....+++..+|.+.++.=.-++|...|..
T Consensus       162 gl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~  241 (310)
T KOG4499|consen  162 GLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPT  241 (310)
T ss_pred             cccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCC
Confidence            4566666543 45556677787787  33332     22222221   1 122345556678877777788899999999


Q ss_pred             CCCEEEEEec-CCCcceeEECC-CCCeEEEEE
Q 022716          243 TGRTVHQIPC-RAAMNSVEWNP-KYNLLAYAG  272 (293)
Q Consensus       243 ~~~~~~~~~~-~~~i~~~~~sp-~~~~la~~~  272 (293)
                      +|+.+..+.. ...|++++|-- +...|.++.
T Consensus       242 tGK~L~eiklPt~qitsccFgGkn~d~~yvT~  273 (310)
T KOG4499|consen  242 TGKILLEIKLPTPQITSCCFGGKNLDILYVTT  273 (310)
T ss_pred             CCcEEEEEEcCCCceEEEEecCCCccEEEEEe
Confidence            9998876643 44699999964 445544443

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=84.30  E-value=26  Score=30.22  Aligned_cols=103  Identities=11%  Similarity=0.019  Sum_probs=50.6

Q ss_pred             ccEEEEEECCCCCeEEEEe-----------CCC-cEEEeecCCCCCCceeE-EEeeCCcCCeeEEEEcCCCCCEEEEEeC
Q 022716           21 KKVHSVAWNCTGTKLASGS-----------VDQ-TARVWHIEPHGHGKVKD-IELRGHADSVDQLCWDPKHADLIATASG   87 (293)
Q Consensus        21 ~~v~~l~~s~~~~~l~s~~-----------~dg-~v~iw~~~~~~~~~~~~-~~~~~h~~~i~~~~~~~~~~~~l~s~~~   87 (293)
                      .....++|.++|+.+++-.           ..+ .|.+++-... .+.... ..+.........+++.+.+  ++++ ..
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dg-dG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~-~~   89 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADG-DGKYDKSNVFAEELSMVTGLAVAVGG--VYVA-TP   89 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCC-CCCcceeEEeecCCCCccceeEecCC--EEEe-CC
Confidence            4567899999999777642           223 6666643221 122111 1122222334667776653  5553 33


Q ss_pred             CCeEEEEeCCCC-----eeeee---eeec-----CceEEEEEcCCCCEEEEEe
Q 022716           88 DKTVRLWDARSG-----KCSQQ---AELS-----GENINITYKPDGTHIAVGN  127 (293)
Q Consensus        88 d~~i~vwd~~~~-----~~~~~---~~~~-----~~~~~~~~~~~~~~l~~~~  127 (293)
                      ....++.|....     +....   +...     .....+++.|||+..++.+
T Consensus        90 ~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G  142 (367)
T TIGR02604        90 PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG  142 (367)
T ss_pred             CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence            333334454321     11111   1111     1134688999998766555

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=84.10  E-value=23  Score=29.51  Aligned_cols=242  Identities=13%  Similarity=0.176  Sum_probs=129.0

Q ss_pred             cEEEEEECCCCCeEEEEeCCCcEEEeecCCCC---CCceeEEEeeC-----CcCCeeEEEEcCCC-----------CCEE
Q 022716           22 KVHSVAWNCTGTKLASGSVDQTARVWHIEPHG---HGKVKDIELRG-----HADSVDQLCWDPKH-----------ADLI   82 (293)
Q Consensus        22 ~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~---~~~~~~~~~~~-----h~~~i~~~~~~~~~-----------~~~l   82 (293)
                      --..++|+|.+.+-++...-+...+||.....   .........+.     -....+.+.|+...           ...+
T Consensus        24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F  103 (336)
T TIGR03118        24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF  103 (336)
T ss_pred             ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence            45689999999887877778999999986321   11112222221     12234555554321           2336


Q ss_pred             EEEeCCCeEEEEeCCCCee---eeeeeec----CceE-EEEEc--CCCCEEEEE-eCCCeEEEEEccccceeeee-----
Q 022716           83 ATASGDKTVRLWDARSGKC---SQQAELS----GENI-NITYK--PDGTHIAVG-NRDDELTILDVRKFKPIHRR-----  146 (293)
Q Consensus        83 ~s~~~d~~i~vwd~~~~~~---~~~~~~~----~~~~-~~~~~--~~~~~l~~~-~~d~~i~l~d~~~~~~~~~~-----  146 (293)
                      +.+++||+|.=|...-+..   .......    +.+. .+++.  ..+.+|... -..++|.++|-. +.++...     
T Consensus       104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~-f~~~~~~g~F~D  182 (336)
T TIGR03118       104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGS-FRPPPLPGSFID  182 (336)
T ss_pred             EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCc-cccccCCCCccC
Confidence            7789999999998533322   1112111    2222 24443  223444433 357788888742 2221110     


Q ss_pred             ---cccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEee--ccCCCeeEEEEc
Q 022716          147 ---KFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT--KLEWPVRTISFS  221 (293)
Q Consensus       147 ---~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~--~~~~~v~~l~~s  221 (293)
                         .-+.....++ +..+.++.        +-..-+++...=+.|..-|.|.+||+.-. .++.+.  +.-+....|+..
T Consensus       183 P~iPagyAPFnIq-nig~~lyV--------tYA~qd~~~~d~v~G~G~G~VdvFd~~G~-l~~r~as~g~LNaPWG~a~A  252 (336)
T TIGR03118       183 PALPAGYAPFNVQ-NLGGTLYV--------TYAQQDADRNDEVAGAGLGYVNVFTLNGQ-LLRRVASSGRLNAPWGLAIA  252 (336)
T ss_pred             CCCCCCCCCcceE-EECCeEEE--------EEEecCCcccccccCCCcceEEEEcCCCc-EEEEeccCCcccCCceeeeC
Confidence               0000000010 11111111        11122344444455666788999997544 344442  222345567776


Q ss_pred             c------CCCEEEEecCCCcEEEEEcCCCCEEEEEecC-------CCcceeEECC------CCCeEEEEEcC
Q 022716          222 H------TGDYIASASEDLFIDISNVHTGRTVHQIPCR-------AAMNSVEWNP------KYNLLAYAGDD  274 (293)
Q Consensus       222 p------~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~-------~~i~~~~~sp------~~~~la~~~~d  274 (293)
                      |      .|.+|+---.||.|..+|..+++.+.++...       ..++.|+|..      ...++.+++-+
T Consensus       253 Pa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGng~~~~~~ntLyFaAGp~  324 (336)
T TIGR03118       253 PESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGNGVSGGSANYLYFTAGPD  324 (336)
T ss_pred             hhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCCCcCCCCcceEEEEeCCC
Confidence            5      4567777678999999999999877766432       2456788865      23455566544

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=83.07  E-value=25  Score=29.06  Aligned_cols=98  Identities=13%  Similarity=0.206  Sum_probs=65.3

Q ss_pred             EECCCCCEEEEec-----CCCcEEEEeCCCC-EEEEEeeccCCCeeEEEEccCCCEEEEecC------C-----------
Q 022716          177 AIDPMGRYFAVGS-----ADSLVSLWDISEM-LCVRTFTKLEWPVRTISFSHTGDYIASASE------D-----------  233 (293)
Q Consensus       177 ~~~~~~~~l~~gs-----~d~~i~iwd~~~~-~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~------d-----------  233 (293)
                      .|+|+|.+|-..-     ..|.|-+||.+.+ ..+.++..|.-....+.+.+||+.|+.+..      |           
T Consensus       120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsM  199 (366)
T COG3490         120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSM  199 (366)
T ss_pred             ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhc
Confidence            3566666654432     2377999998753 456678888888899999999999987654      1           


Q ss_pred             -CcEEEEEcCCCCEEE--EEe---cCCCcceeEECCCCCeEEEEEcC
Q 022716          234 -LFIDISNVHTGRTVH--QIP---CRAAMNSVEWNPKYNLLAYAGDD  274 (293)
Q Consensus       234 -~~i~iw~~~~~~~~~--~~~---~~~~i~~~~~sp~~~~la~~~~d  274 (293)
                       -.+.+-|-.+|..+.  .++   .+-+|+-++..++|...+-+.-.
T Consensus       200 ePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~  246 (366)
T COG3490         200 EPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYR  246 (366)
T ss_pred             CccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEee
Confidence             123455656666553  333   23467788888888777666543

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=82.81  E-value=28  Score=29.47  Aligned_cols=76  Identities=17%  Similarity=0.252  Sum_probs=48.0

Q ss_pred             CeeEEEEccCCCEEEEecCC------CcEEEEEcCCCCEEEEE--e--------------cCCCcceeEECCCCCeEEEE
Q 022716          214 PVRTISFSHTGDYIASASED------LFIDISNVHTGRTVHQI--P--------------CRAAMNSVEWNPKYNLLAYA  271 (293)
Q Consensus       214 ~v~~l~~sp~~~~l~s~s~d------~~i~iw~~~~~~~~~~~--~--------------~~~~i~~~~~sp~~~~la~~  271 (293)
                      ...+|++.++|.++++.=.+      -.|..++.. |+.+..+  +              .....-+++++|+|..|.++
T Consensus        86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~  164 (326)
T PF13449_consen   86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA  164 (326)
T ss_pred             ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence            56688998888888877666      778888865 6554333  1              11245579999999965555


Q ss_pred             EcCCCCCCC-------CcceEEEEeee
Q 022716          272 GDDKNKYQA-------DEGVFRIYGFE  291 (293)
Q Consensus       272 ~~d~~~~~~-------~~~~~~~~~~~  291 (293)
                      -.. -+++.       .....||+.++
T Consensus       165 ~E~-~l~~d~~~~~~~~~~~~ri~~~d  190 (326)
T PF13449_consen  165 MES-PLKQDGPRANPDNGSPLRILRYD  190 (326)
T ss_pred             ECc-cccCCCcccccccCceEEEEEec
Confidence            432 22222       22347888776

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=82.56  E-value=48  Score=31.90  Aligned_cols=169  Identities=15%  Similarity=0.138  Sum_probs=86.3

Q ss_pred             CEEEEEeCCCeEEEEeCCCCeeeeeeeecCce-------------EEEEEcC--CCCEEEEEeC----------CCeEEE
Q 022716           80 DLIATASGDKTVRLWDARSGKCSQQAELSGEN-------------INITYKP--DGTHIAVGNR----------DDELTI  134 (293)
Q Consensus        80 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~-------------~~~~~~~--~~~~l~~~~~----------d~~i~l  134 (293)
                      ..++.++.|+.+.-.|.++|+....+...+.+             ....-.|  .+..+++|+.          +|.|+-
T Consensus       261 ~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A  340 (764)
T TIGR03074       261 RRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRA  340 (764)
T ss_pred             CEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEE
Confidence            36777888999999999999876544322221             0011111  1345666643          578999


Q ss_pred             EEccccceeeeeccccee-eeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEec------------------CCCcEE
Q 022716          135 LDVRKFKPIHRRKFGYEV-NEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGS------------------ADSLVS  195 (293)
Q Consensus       135 ~d~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs------------------~d~~i~  195 (293)
                      +|.++.+.+-+...+... ....+  .++.+.. .....-...+++++...+..+.                  -.+.|.
T Consensus       341 ~Da~TGkl~W~~~~g~p~~~~~~~--~g~~~~~-gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slv  417 (764)
T TIGR03074       341 FDVNTGALVWAWDPGNPDPTAPPA--PGETYTR-NTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLV  417 (764)
T ss_pred             EECCCCcEeeEEecCCCCcccCCC--CCCEecc-CCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEE
Confidence            999888765443221000 00000  1111110 0000001122222222222111                  134566


Q ss_pred             EEeCCCCEEEEEeec--cCC-------CeeEEEEcc-CCC---EEEEecCCCcEEEEEcCCCCEEEEEe
Q 022716          196 LWDISEMLCVRTFTK--LEW-------PVRTISFSH-TGD---YIASASEDLFIDISNVHTGRTVHQIP  251 (293)
Q Consensus       196 iwd~~~~~~~~~~~~--~~~-------~v~~l~~sp-~~~---~l~s~s~d~~i~iw~~~~~~~~~~~~  251 (293)
                      -.|.++++..=.++.  |+.       +..-+.+.. +|+   .++.++.+|.+++.|-++|+.+....
T Consensus       418 ALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~  486 (764)
T TIGR03074       418 ALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE  486 (764)
T ss_pred             EEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence            677777765433332  221       122233433 563   78999999999999999999876543

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=82.43  E-value=30  Score=30.58  Aligned_cols=102  Identities=10%  Similarity=0.083  Sum_probs=59.8

Q ss_pred             cCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEE----EeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCC
Q 022716          168 TGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVR----TFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHT  243 (293)
Q Consensus       168 ~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~----~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~  243 (293)
                      ...+++.++.|++|.+.+|+--.|++|.+++....+...    +.+.-...|....|+.+ +-+|.-+..| +.+|.+..
T Consensus        64 ~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~p  141 (657)
T KOG2377|consen   64 DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLP  141 (657)
T ss_pred             cCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEch
Confidence            345678899999999999999999999999873322111    11111234677777655 4455544444 34444332


Q ss_pred             CC-EEEE-EecCCCcceeEECCCCCeEEEE
Q 022716          244 GR-TVHQ-IPCRAAMNSVEWNPKYNLLAYA  271 (293)
Q Consensus       244 ~~-~~~~-~~~~~~i~~~~~sp~~~~la~~  271 (293)
                      -+ .++- ..+...|+--.|.|+-+.+..+
T Consensus       142 ekrslRlVks~~~nvnWy~yc~et~v~LL~  171 (657)
T KOG2377|consen  142 EKRSLRLVKSHNLNVNWYMYCPETAVILLS  171 (657)
T ss_pred             hhhhhhhhhhcccCccEEEEccccceEeee
Confidence            21 1211 1233457777888877653333

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=81.84  E-value=16  Score=27.71  Aligned_cols=30  Identities=20%  Similarity=0.417  Sum_probs=22.1

Q ss_pred             CeeEEEEcCCC-----CCEEEEEeCCCeEEEEeCC
Q 022716           68 SVDQLCWDPKH-----ADLIATASGDKTVRLWDAR   97 (293)
Q Consensus        68 ~i~~~~~~~~~-----~~~l~s~~~d~~i~vwd~~   97 (293)
                      .+..++|+|.+     .-+|+....++.+.+|...
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~  121 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP  121 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence            67788898854     2367777888888888754

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=81.14  E-value=29  Score=32.77  Aligned_cols=160  Identities=9%  Similarity=0.046  Sum_probs=88.6

Q ss_pred             ccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCcee--EEEe--e----------C----CcCCeeEEEEcC-CCC
Q 022716           19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVK--DIEL--R----------G----HADSVDQLCWDP-KHA   79 (293)
Q Consensus        19 h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~--~~~~--~----------~----h~~~i~~~~~~~-~~~   79 (293)
                      .++-.+++.   +.++|+.|. .+.|.||+++.-......  ...+  .          .    -.-.|+.+...- -+.
T Consensus        39 fKNNLtals---q~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~  114 (717)
T PF08728_consen   39 FKNNLTALS---QRNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGE  114 (717)
T ss_pred             cccceeEEe---cCCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCe
Confidence            445555554   266777755 799999998643221100  0000  0          0    011245444322 234


Q ss_pred             CEEEEEeCCCeEEEEeCC-------CC-------------eeeeeeeecCceEEEEEc--CCCCEEEEEeCCCeEEEEEc
Q 022716           80 DLIATASGDKTVRLWDAR-------SG-------------KCSQQAELSGENINITYK--PDGTHIAVGNRDDELTILDV  137 (293)
Q Consensus        80 ~~l~s~~~d~~i~vwd~~-------~~-------------~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~d~~i~l~d~  137 (293)
                      +.|+.|..||.|.+|.++       ..             ++...+.......+++++  ...+.+|+++....|.++-.
T Consensus       115 EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf  194 (717)
T PF08728_consen  115 EVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAF  194 (717)
T ss_pred             eEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEE
Confidence            678889999999999641       00             011233445566778887  77788888888888888765


Q ss_pred             cccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCC-----CC-EEEEecCCCcEEEEeC
Q 022716          138 RKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPM-----GR-YFAVGSADSLVSLWDI  199 (293)
Q Consensus       138 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~l~~gs~d~~i~iwd~  199 (293)
                      .......  ....+               ......|.+|+|-++     |. .|++++-.|.+.+|++
T Consensus       195 ~l~~~r~--~~~~s---------------~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  195 ALVDERF--YHVPS---------------HQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             ecccccc--ccccc---------------cccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            4321000  00000               002233445555443     32 7888899999999887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=80.31  E-value=42  Score=29.77  Aligned_cols=125  Identities=14%  Similarity=0.198  Sum_probs=67.6

Q ss_pred             ceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEE
Q 022716           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (293)
Q Consensus        13 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~   92 (293)
                      +...+.-+++|.++.||+|.+.||.--.|.+|.+.+............+.+.-+..|....|... .+ ++-.+ +.-+-
T Consensus        59 iSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e-~A~i~-~~G~e  135 (657)
T KOG2377|consen   59 ISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TE-IAFIT-DQGIE  135 (657)
T ss_pred             ceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-ee-EEEEe-cCCeE
Confidence            33344556799999999999999999999999999875322111111112223445777888653 33 32222 33345


Q ss_pred             EEeCCCCe-eeeeee-ecCceEEEEEcCCCCEEEEEe--CCCeEEEEEcccc
Q 022716           93 LWDARSGK-CSQQAE-LSGENINITYKPDGTHIAVGN--RDDELTILDVRKF  140 (293)
Q Consensus        93 vwd~~~~~-~~~~~~-~~~~~~~~~~~~~~~~l~~~~--~d~~i~l~d~~~~  140 (293)
                      +|-+.... .++..+ ....+.-..|.++-+.++.++  ..+.+.-+-++..
T Consensus       136 ~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~  187 (657)
T KOG2377|consen  136 FYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG  187 (657)
T ss_pred             EEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence            55443322 111112 223334456777766544443  3344444444433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	293
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		3e-19
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		2e-17
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		3e-17
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		3e-17
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		3e-17
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		3e-17
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		3e-17
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		3e-17
2h9l_A	329	Wdr5delta23 Length = 329		3e-17
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		3e-17
2gnq_A	336	Structure Of Wdr5 Length = 336		3e-17
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		4e-17
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		4e-17
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		4e-17
2g99_A	308	Structural Basis For The Specific Recognition Of Me		4e-17
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		8e-17
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		9e-17
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		2e-16
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		4e-13
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		1e-11
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		4e-09
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		2e-11
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		7e-11
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		7e-07
3bg0_A	316	Architecture Of A Coat For The Nuclear Pore Membran		1e-09
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		1e-09
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		6e-09
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		9e-09
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		9e-09
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		9e-09
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		9e-09
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		1e-08
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		1e-08
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		2e-08
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		2e-08
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		4e-08
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		4e-08
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		5e-08
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		2e-07
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		5e-08
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		6e-08
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		8e-08
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		3e-07
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		8e-08
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		3e-07
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		2e-07
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		2e-04
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		3e-07
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		5e-04
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		4e-07
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		4e-07
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		4e-07
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		5e-07
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		9e-06
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		6e-07
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		6e-07
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		3e-06
3jro_A	753	Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice		3e-06
3jrp_A	379	Sec13 With Nup145c (Aa109-179) Insertion Blade Leng		4e-06
2pm9_B	297	Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O		4e-06
4aez_A	401	Crystal Structure Of Mitotic Checkpoint Complex Len		4e-06
2pm6_B	297	Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF		5e-06
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		6e-06
2aq5_A	402	Crystal Structure Of Murine Coronin-1 Length = 402		1e-05
2b4e_A	402	Crystal Structure Of Murine Coronin-1: Monoclinic F		1e-05
3zwl_B	369	Structure Of Eukaryotic Translation Initiation Fact		2e-05
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		3e-05
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		3e-05
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		3e-05
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		3e-05
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		3e-05
2pm7_B	297	Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF		3e-05
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		4e-05
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		5e-05
3ewe_A	349	Crystal Structure Of The Nup85SEH1 COMPLEX Length =		5e-05
1nr0_A	611	Two Seven-Bladed Beta-Propeller Domains Revealed By		5e-05
3f3f_A	351	Crystal Structure Of The Nucleoporin Pair Nup85-Seh		6e-05
1r5m_A	425	Crystal Structure Of The C-Terminal Wd40 Domain Of		8e-05
3f3p_A	351	Crystal Structure Of The Nucleoporin Pair Nup85-Seh		1e-04
3mmy_A	368	Structural And Functional Analysis Of The Interacti		2e-04
4e54_B	435	Damaged Dna Induced Uv-Damaged Dna-Binding Protein		3e-04
4e5z_B	436	Damaged Dna Induced Uv-Damaged Dna-Binding Protein		3e-04
3ei4_B	436	Structure Of The Hsddb1-Hsddb2 Complex Length = 436		4e-04
4a11_B	408	Structure Of The Hsddb1-Hscsa Complex Length = 408		4e-04
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		5e-04
1gxr_A	337	Wd40 Region Of Human Groucho/tle1 Length = 337		6e-04

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 92.0 bits (227), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 79/267 (29%), Positives = 130/267 (48%), Gaps = 38/267 (14%)
Query: 14  REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
           +  TGH   V  VA++  G  +AS S D+T ++W+     +G++    L GH+ SV  + 
Sbjct: 51  QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR----NGQLLQT-LTGHSSSVRGVA 105
Query: 74  WDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENIN---ITYKPDGTHIAVGNRDD 130
           + P     IA+AS DKTV+LW+ R+G+  Q   L+G + +   + + PDG  IA  + D 
Sbjct: 106 FSPD-GQTIASASDDKTVKLWN-RNGQLLQ--TLTGHSSSVWGVAFSPDGQTIASASDDK 161
Query: 131 ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG-NAGCYCIAIDPMGRYFAVGS 189
            + +                      WN  G++    TG ++  + +A  P G+  A  S
Sbjct: 162 TVKL----------------------WNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASAS 199
Query: 190 ADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQ 249
            D  V LW+ +  L ++T T     VR ++FS  G  IASAS+D  + + N   G+ +  
Sbjct: 200 DDKTVKLWNRNGQL-LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQT 257
Query: 250 IPC-RAAMNSVEWNPKYNLLAYAGDDK 275
           +    +++N V + P    +A A DDK
Sbjct: 258 LTGHSSSVNGVAFRPDGQTIASASDDK 284

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 86.3 bits (212), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 84/307 (27%), Positives = 137/307 (44%), Gaps = 43/307 (14%)
Query: 5   SIPFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIEL 62
           S P K  ++ ++T  GH K V SV ++  G  LAS S D+  ++W       GK +   +
Sbjct: 5   STPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFEK-TI 60
Query: 63  RGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAE-LSGENINITYKPDGT 121
            GH   +  + W    ++L+ +AS DKT+++WD  SGKC +  +  S       + P   
Sbjct: 61  SGHKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 119
Query: 122 HIAVGNRDDELTILDVRKFK-----PIHRRKFGYEVNEIAWNMTGEMFFLT--------- 167
            I  G+ D+ + I DV+  K     P H       V+ + +N  G +   +         
Sbjct: 120 LIVSGSFDESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRIW 175
Query: 168 -TGNAGCYCIAID------------PMGRYFAVGSADSLVSLWDISEMLCVRTFT--KLE 212
            T +  C    ID            P G+Y    + D+ + LWD S+  C++T+T  K E
Sbjct: 176 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 235
Query: 213 WPVRTISFSHT-GDYIASASEDLFIDISNVHTGRTVHQIPCRA-AMNSVEWNPKYNLLAY 270
                 +FS T G +I S SED  + I N+ T   V ++      + S   +P  N++A 
Sbjct: 236 KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 295
Query: 271 AGDDKNK 277
           A  + +K
Sbjct: 296 AALENDK 302

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 85.5 bits (210), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 84/307 (27%), Positives = 138/307 (44%), Gaps = 47/307 (15%)
Query: 7   PFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG 64
           P K  ++ ++T  GH K V SV ++  G  LAS S D+  ++W       GK +   + G
Sbjct: 14  PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFEK-TISG 69
Query: 65  HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPDGT 121
           H   +  + W    ++L+ +AS DKT+++WD  SGKC +   L G +  +    + P   
Sbjct: 70  HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSN 126
Query: 122 HIAVGNRDDELTILDVRKFK-----PIHRRKFGYEVNEIAWNMTGEMFFLT--------- 167
            I  G+ D+ + I DV+  K     P H       V+ + +N  G +   +         
Sbjct: 127 LIVSGSFDESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRIW 182
Query: 168 -TGNAGCYCIAID------------PMGRYFAVGSADSLVSLWDISEMLCVRTFT--KLE 212
            T +  C    ID            P G+Y    + D+ + LWD S+  C++T+T  K E
Sbjct: 183 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 242
Query: 213 WPVRTISFSHT-GDYIASASEDLFIDISNVHTGRTVHQIPCRA-AMNSVEWNPKYNLLAY 270
                 +FS T G +I S SED  + I N+ T   V ++      + S   +P  N++A 
Sbjct: 243 KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 302
Query: 271 AGDDKNK 277
           A  + +K
Sbjct: 303 AALENDK 309

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 85.5 bits (210), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 84/307 (27%), Positives = 138/307 (44%), Gaps = 47/307 (15%)
Query: 7   PFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG 64
           P K  ++ ++T  GH K V SV ++  G  LAS S D+  ++W       GK +   + G
Sbjct: 13  PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFEK-TISG 68
Query: 65  HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPDGT 121
           H   +  + W    ++L+ +AS DKT+++WD  SGKC +   L G +  +    + P   
Sbjct: 69  HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSN 125
Query: 122 HIAVGNRDDELTILDVRKFK-----PIHRRKFGYEVNEIAWNMTGEMFFLT--------- 167
            I  G+ D+ + I DV+  K     P H       V+ + +N  G +   +         
Sbjct: 126 LIVSGSFDESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRIW 181
Query: 168 -TGNAGCYCIAID------------PMGRYFAVGSADSLVSLWDISEMLCVRTFT--KLE 212
            T +  C    ID            P G+Y    + D+ + LWD S+  C++T+T  K E
Sbjct: 182 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 241
Query: 213 WPVRTISFSHT-GDYIASASEDLFIDISNVHTGRTVHQIPCRA-AMNSVEWNPKYNLLAY 270
                 +FS T G +I S SED  + I N+ T   V ++      + S   +P  N++A 
Sbjct: 242 KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 301
Query: 271 AGDDKNK 277
           A  + +K
Sbjct: 302 AALENDK 308

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 85.5 bits (210), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 88/321 (27%), Positives = 144/321 (44%), Gaps = 51/321 (15%)
Query: 1   MGESSIPFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVK 58
           MG  S   K  ++ ++T  GH K V SV ++  G  LAS S D+  ++W       GK +
Sbjct: 5   MGRGSEFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFE 61
Query: 59  DIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI---T 115
              + GH   +  + W    ++L+ +AS DKT+++WD  SGKC +   L G +  +    
Sbjct: 62  K-TISGHKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCN 117
Query: 116 YKPDGTHIAVGNRDDELTILDVRKFK-----PIHRRKFGYEVNEIAWNMTGEMFFLT--- 167
           + P    I  G+ D+ + I DV+  K     P H       V+ + +N  G +   +   
Sbjct: 118 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYD 173
Query: 168 -------TGNAGCYCIAID------------PMGRYFAVGSADSLVSLWDISEMLCVRTF 208
                  T +  C    ID            P G+Y    + D+ + LWD S+  C++T+
Sbjct: 174 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 233
Query: 209 T--KLEWPVRTISFSHT-GDYIASASEDLFIDISNVHTGRTVHQIPCRA-AMNSVEWNPK 264
           T  K E      +FS T G +I S SED  + I N+ T   V ++      + S   +P 
Sbjct: 234 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT 293
Query: 265 YNLLAYAGDDKNK----YQAD 281
            N++A A  + +K    Y++D
Sbjct: 294 ENIIASAALENDKTIKLYKSD 314

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 85.5 bits (210), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 84/307 (27%), Positives = 138/307 (44%), Gaps = 47/307 (15%)
Query: 7   PFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG 64
           P K  ++ ++T  GH K V SV ++  G  LAS S D+  ++W       GK +   + G
Sbjct: 30  PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFEKT-ISG 85
Query: 65  HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPDGT 121
           H   +  + W    ++L+ +AS DKT+++WD  SGKC +   L G +  +    + P   
Sbjct: 86  HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSN 142
Query: 122 HIAVGNRDDELTILDVRKFK-----PIHRRKFGYEVNEIAWNMTGEMFFLT--------- 167
            I  G+ D+ + I DV+  K     P H       V+ + +N  G +   +         
Sbjct: 143 LIVSGSFDESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRIW 198
Query: 168 -TGNAGCYCIAID------------PMGRYFAVGSADSLVSLWDISEMLCVRTFT--KLE 212
            T +  C    ID            P G+Y    + D+ + LWD S+  C++T+T  K E
Sbjct: 199 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 258
Query: 213 WPVRTISFSHT-GDYIASASEDLFIDISNVHTGRTVHQIPCRA-AMNSVEWNPKYNLLAY 270
                 +FS T G +I S SED  + I N+ T   V ++      + S   +P  N++A 
Sbjct: 259 KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 318
Query: 271 AGDDKNK 277
           A  + +K
Sbjct: 319 AALENDK 325

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 85.5 bits (210), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 84/307 (27%), Positives = 138/307 (44%), Gaps = 47/307 (15%)
Query: 7   PFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG 64
           P K  ++ ++T  GH K V SV ++  G  LAS S D+  ++W       GK +   + G
Sbjct: 14  PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFEK-TISG 69
Query: 65  HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPDGT 121
           H   +  + W    ++L+ +AS DKT+++WD  SGKC +   L G +  +    + P   
Sbjct: 70  HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSN 126
Query: 122 HIAVGNRDDELTILDVRKFK-----PIHRRKFGYEVNEIAWNMTGEMFFLT--------- 167
            I  G+ D+ + I DV+  K     P H       V+ + +N  G +   +         
Sbjct: 127 LIVSGSFDESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRIW 182
Query: 168 -TGNAGCYCIAID------------PMGRYFAVGSADSLVSLWDISEMLCVRTFT--KLE 212
            T +  C    ID            P G+Y    + D+ + LWD S+  C++T+T  K E
Sbjct: 183 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 242
Query: 213 WPVRTISFSHT-GDYIASASEDLFIDISNVHTGRTVHQIPCRA-AMNSVEWNPKYNLLAY 270
                 +FS T G +I S SED  + I N+ T   V ++      + S   +P  N++A 
Sbjct: 243 KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 302
Query: 271 AGDDKNK 277
           A  + +K
Sbjct: 303 AALENDK 309

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 85.5 bits (210), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 85/313 (27%), Positives = 138/313 (44%), Gaps = 47/313 (15%)
Query: 1   MGESSIPFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVK 58
           MG  S   K  ++ ++T  GH K V SV ++  G  LAS S D+  ++W        K  
Sbjct: 5   MGRGSEFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT- 63
Query: 59  DIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI---T 115
              + GH   +  + W    ++L+ +AS DKT+++WD  SGKC +   L G +  +    
Sbjct: 64  ---ISGHKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCN 117
Query: 116 YKPDGTHIAVGNRDDELTILDVRKFK-----PIHRRKFGYEVNEIAWNMTGEMFFLT--- 167
           + P    I  G+ D+ + I DV+  K     P H       V+ + +N  G +   +   
Sbjct: 118 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYD 173
Query: 168 -------TGNAGCYCIAID------------PMGRYFAVGSADSLVSLWDISEMLCVRTF 208
                  T +  C    ID            P G+Y    + D+ + LWD S+  C++T+
Sbjct: 174 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 233
Query: 209 T--KLEWPVRTISFSHT-GDYIASASEDLFIDISNVHTGRTVHQIPCRA-AMNSVEWNPK 264
           T  K E      +FS T G +I S SED  + I N+ T   V ++      + S   +P 
Sbjct: 234 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT 293
Query: 265 YNLLAYAGDDKNK 277
            N++A A  + +K
Sbjct: 294 ENIIASAALENDK 306

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 85.5 bits (210), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 84/307 (27%), Positives = 138/307 (44%), Gaps = 47/307 (15%)
Query: 7   PFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG 64
           P K  ++ ++T  GH K V SV ++  G  LAS S D+  ++W       GK +   + G
Sbjct: 25  PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFEK-TISG 80
Query: 65  HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPDGT 121
           H   +  + W    ++L+ +AS DKT+++WD  SGKC +   L G +  +    + P   
Sbjct: 81  HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSN 137
Query: 122 HIAVGNRDDELTILDVRKFK-----PIHRRKFGYEVNEIAWNMTGEMFFLT--------- 167
            I  G+ D+ + I DV+  K     P H       V+ + +N  G +   +         
Sbjct: 138 LIVSGSFDESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRIW 193
Query: 168 -TGNAGCYCIAID------------PMGRYFAVGSADSLVSLWDISEMLCVRTFT--KLE 212
            T +  C    ID            P G+Y    + D+ + LWD S+  C++T+T  K E
Sbjct: 194 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 253
Query: 213 WPVRTISFSHT-GDYIASASEDLFIDISNVHTGRTVHQIPCRA-AMNSVEWNPKYNLLAY 270
                 +FS T G +I S SED  + I N+ T   V ++      + S   +P  N++A 
Sbjct: 254 KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 313
Query: 271 AGDDKNK 277
           A  + +K
Sbjct: 314 AALENDK 320

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 85.5 bits (210), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 84/307 (27%), Positives = 138/307 (44%), Gaps = 47/307 (15%)
Query: 7   PFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG 64
           P K  ++ ++T  GH K V SV ++  G  LAS S D+  ++W       GK +   + G
Sbjct: 14  PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFEK-TISG 69
Query: 65  HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPDGT 121
           H   +  + W    ++L+ +AS DKT+++WD  SGKC +   L G +  +    + P   
Sbjct: 70  HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSN 126
Query: 122 HIAVGNRDDELTILDVRKFK-----PIHRRKFGYEVNEIAWNMTGEMFFLT--------- 167
            I  G+ D+ + I DV+  K     P H       V+ + +N  G +   +         
Sbjct: 127 LIVSGSFDESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRIW 182
Query: 168 -TGNAGCYCIAID------------PMGRYFAVGSADSLVSLWDISEMLCVRTFT--KLE 212
            T +  C    ID            P G+Y    + D+ + LWD S+  C++T+T  K E
Sbjct: 183 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 242
Query: 213 WPVRTISFSHT-GDYIASASEDLFIDISNVHTGRTVHQIPCRA-AMNSVEWNPKYNLLAY 270
                 +FS T G +I S SED  + I N+ T   V ++      + S   +P  N++A 
Sbjct: 243 KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 302
Query: 271 AGDDKNK 277
           A  + +K
Sbjct: 303 AALENDK 309

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 85.5 bits (210), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 84/307 (27%), Positives = 138/307 (44%), Gaps = 47/307 (15%)
Query: 7   PFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG 64
           P K  ++ ++T  GH K V SV ++  G  LAS S D+  ++W       GK +   + G
Sbjct: 32  PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFEKT-ISG 87
Query: 65  HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPDGT 121
           H   +  + W    ++L+ +AS DKT+++WD  SGKC +   L G +  +    + P   
Sbjct: 88  HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSN 144
Query: 122 HIAVGNRDDELTILDVRKFK-----PIHRRKFGYEVNEIAWNMTGEMFFLT--------- 167
            I  G+ D+ + I DV+  K     P H       V+ + +N  G +   +         
Sbjct: 145 LIVSGSFDESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRIW 200
Query: 168 -TGNAGCYCIAID------------PMGRYFAVGSADSLVSLWDISEMLCVRTFT--KLE 212
            T +  C    ID            P G+Y    + D+ + LWD S+  C++T+T  K E
Sbjct: 201 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 260
Query: 213 WPVRTISFSHT-GDYIASASEDLFIDISNVHTGRTVHQIPCRA-AMNSVEWNPKYNLLAY 270
                 +FS T G +I S SED  + I N+ T   V ++      + S   +P  N++A 
Sbjct: 261 KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 320
Query: 271 AGDDKNK 277
           A  + +K
Sbjct: 321 AALENDK 327

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 85.1 bits (209), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 84/307 (27%), Positives = 138/307 (44%), Gaps = 47/307 (15%)
Query: 7   PFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG 64
           P K  ++ ++T  GH K V SV ++  G  LAS S D+  ++W       GK +   + G
Sbjct: 8   PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFEK-TISG 63
Query: 65  HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPDGT 121
           H   +  + W    ++L+ +AS DKT+++WD  SGKC +   L G +  +    + P   
Sbjct: 64  HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSN 120
Query: 122 HIAVGNRDDELTILDVRKFK-----PIHRRKFGYEVNEIAWNMTGEMFFLT--------- 167
            I  G+ D+ + I DV+  K     P H       V+ + +N  G +   +         
Sbjct: 121 LIVSGSFDESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRIW 176
Query: 168 -TGNAGCYCIAID------------PMGRYFAVGSADSLVSLWDISEMLCVRTFT--KLE 212
            T +  C    ID            P G+Y    + D+ + LWD S+  C++T+T  K E
Sbjct: 177 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 236
Query: 213 WPVRTISFSHT-GDYIASASEDLFIDISNVHTGRTVHQIPCRA-AMNSVEWNPKYNLLAY 270
                 +FS T G +I S SED  + I N+ T   V ++      + S   +P  N++A 
Sbjct: 237 KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 296
Query: 271 AGDDKNK 277
           A  + +K
Sbjct: 297 AALENDK 303

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 85.1 bits (209), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 84/307 (27%), Positives = 138/307 (44%), Gaps = 47/307 (15%)
Query: 7   PFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG 64
           P K  ++ ++T  GH K V SV ++  G  LAS S D+  ++W       GK +   + G
Sbjct: 9   PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFEK-TISG 64
Query: 65  HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPDGT 121
           H   +  + W    ++L+ +AS DKT+++WD  SGKC +   L G +  +    + P   
Sbjct: 65  HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSN 121
Query: 122 HIAVGNRDDELTILDVRKFK-----PIHRRKFGYEVNEIAWNMTGEMFFLT--------- 167
            I  G+ D+ + I DV+  K     P H       V+ + +N  G +   +         
Sbjct: 122 LIVSGSFDESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRIW 177
Query: 168 -TGNAGCYCIAID------------PMGRYFAVGSADSLVSLWDISEMLCVRTFT--KLE 212
            T +  C    ID            P G+Y    + D+ + LWD S+  C++T+T  K E
Sbjct: 178 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 237
Query: 213 WPVRTISFSHT-GDYIASASEDLFIDISNVHTGRTVHQIPCRA-AMNSVEWNPKYNLLAY 270
                 +FS T G +I S SED  + I N+ T   V ++      + S   +P  N++A 
Sbjct: 238 KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 297
Query: 271 AGDDKNK 277
           A  + +K
Sbjct: 298 AALENDK 304

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 85.1 bits (209), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 84/307 (27%), Positives = 138/307 (44%), Gaps = 47/307 (15%)
Query: 7   PFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG 64
           P K  ++ ++T  GH K V SV ++  G  LAS S D+  ++W       GK +   + G
Sbjct: 8   PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFEK-TISG 63
Query: 65  HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPDGT 121
           H   +  + W    ++L+ +AS DKT+++WD  SGKC +   L G +  +    + P   
Sbjct: 64  HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSN 120
Query: 122 HIAVGNRDDELTILDVRKFK-----PIHRRKFGYEVNEIAWNMTGEMFFLT--------- 167
            I  G+ D+ + I DV+  K     P H       V+ + +N  G +   +         
Sbjct: 121 LIVSGSFDESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRIW 176
Query: 168 -TGNAGCYCIAID------------PMGRYFAVGSADSLVSLWDISEMLCVRTFT--KLE 212
            T +  C    ID            P G+Y    + D+ + LWD S+  C++T+T  K E
Sbjct: 177 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 236
Query: 213 WPVRTISFSHT-GDYIASASEDLFIDISNVHTGRTVHQIPCRA-AMNSVEWNPKYNLLAY 270
                 +FS T G +I S SED  + I N+ T   V ++      + S   +P  N++A 
Sbjct: 237 KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 296
Query: 271 AGDDKNK 277
           A  + +K
Sbjct: 297 AALENDK 303

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 85.1 bits (209), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 83/305 (27%), Positives = 136/305 (44%), Gaps = 43/305 (14%)
Query: 7   PFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG 64
           P K  ++ ++T  GH K V SV ++  G  LAS S D+  ++W       GK +   + G
Sbjct: 4   PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFEK-TISG 59
Query: 65  HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAE-LSGENINITYKPDGTHI 123
           H   +  + W    ++L+ +AS DKT+++WD  SGKC +  +  S       + P    I
Sbjct: 60  HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 118
Query: 124 AVGNRDDELTILDVRKFK-----PIHRRKFGYEVNEIAWNMTGEMFFLT----------T 168
             G+ D+ + I DV+  K     P H       V+ + +N  G +   +          T
Sbjct: 119 VSGSFDESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRIWDT 174
Query: 169 GNAGCYCIAID------------PMGRYFAVGSADSLVSLWDISEMLCVRTFT--KLEWP 214
            +  C    ID            P G+Y    + D+ + LWD S+  C++T+T  K E  
Sbjct: 175 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 234
Query: 215 VRTISFSHT-GDYIASASEDLFIDISNVHTGRTVHQIPCRA-AMNSVEWNPKYNLLAYAG 272
               +FS T G +I S SED  + I N+ T   V ++      + S   +P  N++A A 
Sbjct: 235 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 294
Query: 273 DDKNK 277
            + +K
Sbjct: 295 LENDK 299

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 84.3 bits (207), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 85/313 (27%), Positives = 140/313 (44%), Gaps = 47/313 (15%)
Query: 1   MGESSIPFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVK 58
           MG  S   K  ++ ++T  GH K V SV ++  G  LA+ S D+  ++W       GK +
Sbjct: 5   MGRGSEFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAY---DGKFE 61
Query: 59  DIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI---T 115
              + GH   +  + W    ++L+ +AS DKT+++WD  SGKC +   L G +  +    
Sbjct: 62  K-TISGHKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCN 117
Query: 116 YKPDGTHIAVGNRDDELTILDVRKFK-----PIHRRKFGYEVNEIAWNMTGEMFFLT--- 167
           + P    I  G+ D+ + I DV+  K     P H       V+ + +N  G +   +   
Sbjct: 118 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYD 173
Query: 168 -------TGNAGCYCIAID------------PMGRYFAVGSADSLVSLWDISEMLCVRTF 208
                  T +  C    ID            P G+Y    + D+ + LWD S+  C++T+
Sbjct: 174 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 233
Query: 209 T--KLEWPVRTISFSHT-GDYIASASEDLFIDISNVHTGRTVHQIPCRA-AMNSVEWNPK 264
           T  K E      +FS T G +I S SED  + I N+ T   V ++      + S   +P 
Sbjct: 234 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT 293
Query: 265 YNLLAYAGDDKNK 277
            N++A A  + +K
Sbjct: 294 ENIIASAALENDK 306

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 84.0 bits (206), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 84/307 (27%), Positives = 137/307 (44%), Gaps = 47/307 (15%)
Query: 7   PFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG 64
           P K  ++  +T  GH K V SV ++  G  LAS S D+  ++W       GK +   + G
Sbjct: 11  PVKPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFEK-TISG 66
Query: 65  HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPDGT 121
           H   +  + W    ++L+ +AS DKT+++WD  SGKC +   L G +  +    + P   
Sbjct: 67  HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSN 123
Query: 122 HIAVGNRDDELTILDVR-----KFKPIHRRKFGYEVNEIAWNMTGEMFFLT--------- 167
            I  G+ D+ + I DV+     K  P H       V+ + +N  G +   +         
Sbjct: 124 LIVSGSFDESVRIWDVKTGMCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRIW 179
Query: 168 -TGNAGCYCIAID------------PMGRYFAVGSADSLVSLWDISEMLCVRTFT--KLE 212
            T +  C    ID            P G+Y    + D+ + LWD S+  C++T+T  K E
Sbjct: 180 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 239
Query: 213 WPVRTISFSHT-GDYIASASEDLFIDISNVHTGRTVHQIPCRA-AMNSVEWNPKYNLLAY 270
                 +FS T G +I S SED  + I N+ T   V ++      + S   +P  N++A 
Sbjct: 240 KYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 299
Query: 271 AGDDKNK 277
           A  + +K
Sbjct: 300 AALENDK 306

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 84/307 (27%), Positives = 137/307 (44%), Gaps = 47/307 (15%)
Query: 7   PFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG 64
           P K  ++  +T  GH K V SV ++  G  LAS S D+  ++W       GK +   + G
Sbjct: 11  PVKPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFEK-TISG 66
Query: 65  HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPDGT 121
           H   +  + W    ++L+ +AS DKT+++WD  SGKC +   L G +  +    + P   
Sbjct: 67  HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSN 123
Query: 122 HIAVGNRDDELTILDVR-----KFKPIHRRKFGYEVNEIAWNMTGEMFFLT--------- 167
            I  G+ D+ + I DV+     K  P H       V+ + +N  G +   +         
Sbjct: 124 LIVSGSFDESVRIWDVKTGMCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRIW 179
Query: 168 -TGNAGCYCIAID------------PMGRYFAVGSADSLVSLWDISEMLCVRTFT--KLE 212
            T +  C    ID            P G+Y    + D+ + LWD S+  C++T+T  K E
Sbjct: 180 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNE 239
Query: 213 WPVRTISFSHT-GDYIASASEDLFIDISNVHTGRTVHQIPCRA-AMNSVEWNPKYNLLAY 270
                 +FS T G +I S SED  + I N+ T   V ++      + S   +P  N++A 
Sbjct: 240 KYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 299
Query: 271 AGDDKNK 277
           A  + +K
Sbjct: 300 AALENDK 306

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 71.6 bits (174), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 70/287 (24%), Positives = 122/287 (42%), Gaps = 40/287 (13%)
Query: 9   KNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADS 68
           +NL++         + SV ++  G  LA+G+ D+  R+W IE   + K+  I L+GH   
Sbjct: 112 ENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIE---NRKIVMI-LQGHEQD 167
Query: 69  VDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKP-DGTHIAVGN 127
           +  L + P   D + + SGD+TVR+WD R+G+CS    +      +   P DG +IA G+
Sbjct: 168 IYSLDYFPS-GDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGS 226
Query: 128 RDDELTILDVRKFKPIHRRKFGYEVNEI-AWNMTGEMFFLTTGNAGCYCIAIDPMGRYFA 186
            D  + + D          + G+ V  + + N +G     T      Y +     G+   
Sbjct: 227 LDRAVRVWD---------SETGFLVERLDSENESG-----TGHKDSVYSVVFTRDGQSVV 272
Query: 187 VGSADSLVSLWDISEM------------LCVRTFTKLEWPVRTISFSHTGDYIASASEDL 234
            GS D  V LW++                C  T+   +  V +++ +   +YI S S+D 
Sbjct: 273 SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDR 332
Query: 235 FIDISNVHTGRTV-------HQIPCRAAMNSVEWNPKYNLLAYAGDD 274
            +   +  +G  +       + +   A  N     P+YN+ A    D
Sbjct: 333 GVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGD 379

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/250 (24%), Positives = 112/250 (44%), Gaps = 16/250 (6%)
Query: 14  REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
           R   GH   V  ++++ +G  LAS S D T ++W  +  G   ++   + GH  +V  + 
Sbjct: 144 RTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ--GFECIRT--MHGHDHNVSSVS 199
Query: 74  WDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKP--DGTHIAVGNRDDE 131
             P + D I +AS DKT+++W+ ++G C +      E + +  +P  DGT IA  + D  
Sbjct: 200 IMP-NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMV-RPNQDGTLIASCSNDQT 257
Query: 132 LTILDV-RKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSA 190
           + +  V  K      R+  + V  I+W        ++         +  P G +   GS 
Sbjct: 258 VRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKP-GPFLLSGSR 316
Query: 191 DSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQI 250
           D  + +WD+S  +C+ T    +  VR + F   G +I S ++D  + + +    R     
Sbjct: 317 DKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKR----- 371
Query: 251 PCRAAMNSVE 260
            C   +N+ E
Sbjct: 372 -CMKTLNAHE 380

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 58.5 bits (140), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 54/233 (23%), Positives = 103/233 (44%), Gaps = 27/233 (11%)
Query: 62  LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENI-NITYKPDG 120
           L GH   V ++ + P  + ++ +AS D T+++WD  +G   +  +   +++ +I++   G
Sbjct: 104 LSGHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG 162
Query: 121 THIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDP 180
             +A  + D  + + D + F+ I R   G++ N                      ++I P
Sbjct: 163 KLLASCSADMTIKLWDFQGFECI-RTMHGHDHN-------------------VSSVSIMP 202
Query: 181 MGRYFAVGSADSLVSLWDISEMLCVRTFT-KLEWPVRTISFSHTGDYIASASEDLFIDIS 239
            G +    S D  + +W++    CV+TFT   EW VR +  +  G  IAS S D  + + 
Sbjct: 203 NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREW-VRMVRPNQDGTLIASCSNDQTVRVW 261
Query: 240 NVHTGRTVHQI-PCRAAMNSVEWNPK--YNLLAYAGDDKNKYQADEGVFRIYG 289
            V T     ++   R  +  + W P+  Y+ ++ A   + K     G F + G
Sbjct: 262 VVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSG 314

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 58/301 (19%), Positives = 115/301 (38%), Gaps = 58/301 (19%)
Query: 11  LHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVD 70
           L  R   GH   V  VA +  G    S S D + R+W+++ +G  + K     GH   V 
Sbjct: 58  LPDRRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQ-NGQCQYK---FLGHTKDVL 113
Query: 71  QLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGEN-----INITYKPDGTHIAV 125
            + + P +  ++ +   D  +R+W+ + G+C               +  +   D   I  
Sbjct: 114 SVAFSPDNRQIV-SGGRDNALRVWNVK-GECMHTLSRGAHTDWVSCVRFSPSLDAPVIVS 171
Query: 126 GNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYF 185
           G  D+ + + D+   + +              ++ G   ++T+       + + P G   
Sbjct: 172 GGWDNLVKVWDLATGRLVT-------------DLKGHTNYVTS-------VTVSPDGSLC 211
Query: 186 AVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASE-----------DL 234
           A    D +  LWD+++   +        P+  I FS    ++ +A+E           D+
Sbjct: 212 ASSDKDGVARLWDLTKGEALSEMAAGA-PINQICFSPNRYWMCAATEKGIRIFDLENKDI 270
Query: 235 FIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQA-DEGVFRIYGF-EN 292
            ++++  H G             S +  P+   +A++ D    Y    + V R++G  EN
Sbjct: 271 IVELAPEHQG-------------SKKIVPECVSIAWSADGSTLYSGYTDNVIRVWGVSEN 317
Query: 293 A 293
           A
Sbjct: 318 A 318

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 64.3 bits (155), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 57/237 (24%), Positives = 101/237 (42%), Gaps = 34/237 (14%)
Query: 14  REYTGHKKKVHSVAWNCTGTK----LASGSVDQTARVWHIEPHGHGKVKDIE--LRGHAD 67
           ++   H   + SVAW     +    + +GS+D   +VW        +  D++  L GH  
Sbjct: 26  KQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRD----ERLDLQWSLEGHQL 81
Query: 68  SVDQLCWDPKHADLIATASG-DKTVRLWDARSGKCSQQAELSGENI-NITYKPDGTHIAV 125
            V  +  D  H   IA +S  D  +RLWD  +GK  +  +    +   + + PD  ++A 
Sbjct: 82  GVVSV--DISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLAT 139
Query: 126 GNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYF 185
           G    ++ I  V   K                    + + L T       IA  P G+Y 
Sbjct: 140 GTHVGKVNIFGVESGK--------------------KEYSLDTRGKFILSIAYSPDGKYL 179
Query: 186 AVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVH 242
           A G+ D +++++DI+    + T      P+R+++FS     + +AS+D +I I +V 
Sbjct: 180 ASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQ 236

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 51.2 bits (121), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 50/239 (20%), Positives = 98/239 (41%), Gaps = 37/239 (15%)
Query: 63  RGHADSVDQLCW---DPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPD 119
           + H D++  + W     ++++ + T S D  V++W  R  +   Q  L G  + +    D
Sbjct: 29  QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVV-SVD 87
Query: 120 GTHI----AVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYC 175
            +H     A  + D  + + D+   K I                      +  G    + 
Sbjct: 88  ISHTLPIAASSSLDAHIRLWDLENGKQIKS--------------------IDAGPVDAWT 127
Query: 176 IAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLF 235
           +A  P  +Y A G+    V+++ +       +       + +I++S  G Y+AS + D  
Sbjct: 128 LAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGI 187
Query: 236 IDISNVHTGRTVHQIPCRA-AMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFENA 293
           I+I ++ TG+ +H +   A  + S+ ++P   LL  A DD        G  +IY  ++A
Sbjct: 188 INIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDD--------GYIKIYDVQHA 238

>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane Length = 316

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 71/290 (24%), Positives = 129/290 (44%), Gaps = 48/290 (16%)
Query: 17  TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW-D 75
           T H+  +H    +  GT+LA+ S D++ +++ +   G   + D  LRGH   V Q+ W  
Sbjct: 10  TSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIAD--LRGHEGPVWQVAWAH 67
Query: 76  PKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINIT---YKPD--GTHIAVGNRDD 130
           P + +++A+ S D+ V +W   +G   +  E +G + ++    + P   G  +A G+ D 
Sbjct: 68  PMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDG 127
Query: 131 ELTIL--------DVRKFKPIHRRKFGYEVNEIAWN---MTGEMFFLTTGNAGCYCIAID 179
            +++L        +V+K    H        N ++W    + G +    +G    Y     
Sbjct: 128 AISLLTYTGEGQWEVKKINNAHT----IGCNAVSWAPAVVPGSLIDHPSGQKPNYI---- 179
Query: 180 PMGRYFAVGSADSLVSLWDISEMLCVRTFTKLE----WPVRTISFSHT----GDYIASAS 231
              + FA G  D+L+ LW   E    +   KLE    W VR ++++ +       IAS S
Sbjct: 180 ---KRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDW-VRDVAWAPSIGLPTSTIASCS 235
Query: 232 EDLFIDI-------SNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDD 274
           +D  + I       SN  + + +H+      +  V W+   N+LA +G D
Sbjct: 236 QDGRVFIWTCDDASSNTWSPKLLHKF--NDVVWHVSWSITANILAVSGGD 283

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 67/306 (21%), Positives = 122/306 (39%), Gaps = 53/306 (17%)
Query: 35  LASGSVDQTARVWHI---EPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV 91
           L SGS D+T  +W +   E +G+  +    L GH   V  L    ++   I++ S DKT+
Sbjct: 42  LISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISS-SWDKTL 100
Query: 92  RLWDARSGKCSQQ-AELSGENINITYKPDGTHIAVGNRDDELTILDVR------------ 138
           RLWD R+G   ++      E  ++ + PD   I     + E+ + ++             
Sbjct: 101 RLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKEN 160
Query: 139 --------KFKPIHRR------------KFGYEVNEIAWNMTGEM-FFLTTGNAGCYCIA 177
                   ++ PI +               G++     WN   ++ +      +    ++
Sbjct: 161 HSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLS 220
Query: 178 IDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEW----PVRTISFSHTGDYIASASED 233
           I P G+Y A G  D  + +WDI  +    T+ + E+     +  I+F+    ++A  + D
Sbjct: 221 ISPNGKYIATGGKDKKLLIWDILNL----TYPQREFDAGSTINQIAFNPKLQWVAVGT-D 275
Query: 234 LFIDISNVHTGR-----TVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQA-DEGVFRI 287
             + I N+ T       T+   P   A      NP+   LA+    K  +    +GV R 
Sbjct: 276 QGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRT 335
Query: 288 YGFENA 293
           + FE +
Sbjct: 336 FSFETS 341

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 58.2 bits (139), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 99/243 (40%), Gaps = 37/243 (15%)
Query: 18  GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK 77
           GH   V +    C G ++ SGS D T +VW       GK     L GH   V    W  +
Sbjct: 116 GHDDHVITCLQFC-GNRIVSGSDDNTLKVWSAVT---GKCLR-TLVGHTGGV----WSSQ 166
Query: 78  HAD-LIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILD 136
             D +I + S D+T+++W+A +G+C          +   +  +   +  G+RD  L + D
Sbjct: 167 MRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE-KRVVSGSRDATLRVWD 225
Query: 137 VRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGN-AGCYCIAIDPMGRYFAVGSADSLVS 195
           +                      TG+   +  G+ A   C+  D  GR    G+ D +V 
Sbjct: 226 IE---------------------TGQCLHVLMGHVAAVRCVQYD--GRRVVSGAYDFMVK 262
Query: 196 LWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAA 255
           +WD     C+ T       V ++ F   G ++ S S D  I + +V TG  +H +    +
Sbjct: 263 VWDPETETCLHTLQGHTNRVYSLQFD--GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS 320
Query: 256 MNS 258
           + S
Sbjct: 321 LTS 323

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 57.4 bits (137), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 81/176 (46%), Gaps = 18/176 (10%)
Query: 14  REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
           + + GHK  V SV  +   + + SGS D+T +VW I+           L GH D V Q+ 
Sbjct: 101 QRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLA-----TLLGHNDWVSQVR 155
Query: 74  WDP-KHAD----LIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPDGTHIAV 125
             P + AD     I +A  DK V+ W+    +   +A+  G N NI   T  PDGT IA 
Sbjct: 156 VVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI--EADFIGHNSNINTLTASPDGTLIAS 213
Query: 126 GNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNA-GCYCIAIDP 180
             +D E+ + ++   K ++      EV  +A   +   ++L    A G    ++DP
Sbjct: 214 AGKDGEIMLWNLAAKKAMYTLSAQDEVFSLA--FSPNRYWLAAATATGIKVFSLDP 267

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 57.4 bits (137), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 81/176 (46%), Gaps = 18/176 (10%)
Query: 14  REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
           + + GHK  V SV  +   + + SGS D+T +VW I+           L GH D V Q+ 
Sbjct: 95  QRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLA-----TLLGHNDWVSQVR 149
Query: 74  WDP-KHAD----LIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPDGTHIAV 125
             P + AD     I +A  DK V+ W+    +   +A+  G N NI   T  PDGT IA 
Sbjct: 150 VVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI--EADFIGHNSNINTLTASPDGTLIAS 207
Query: 126 GNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNA-GCYCIAIDP 180
             +D E+ + ++   K ++      EV  +A   +   ++L    A G    ++DP
Sbjct: 208 AGKDGEIMLWNLAAKKAMYTLSAQDEVFSLA--FSPNRYWLAAATATGIKVFSLDP 261

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 57.4 bits (137), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 77/302 (25%), Positives = 114/302 (37%), Gaps = 56/302 (18%)
Query: 18  GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK 77
           GH++ V  VAW+  G  LAS S D T  +W         V  +E  GH + V  + W P 
Sbjct: 59  GHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLE--GHENEVKSVAWAPS 116
Query: 78  HADLIATASGDKTVRLWDARSG---KCSQQAELSGENI-NITYKPDGTHIAVGNRDDELT 133
             +L+AT S DK+V +W+       +C        +++ ++ + P    +A  + DD + 
Sbjct: 117 -GNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVK 175
Query: 134 ILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSL 193
           +               Y   E  W        L    +  + +A DP G+  A  S D  
Sbjct: 176 L---------------YREEEDDWVCCAT---LEGHESTVWSLAFDPSGQRLASCSDDRT 217
Query: 194 VSLW----------------DIS-EMLCV------RTFTKLEWPVRT--ISFSHTGDYIA 228
           V +W                D S + +C       RT   + W   T  ++ +   D I 
Sbjct: 218 VRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIR 277
Query: 229 SASEDLFIDISNVHTGRTVHQIPCRAA-MNSVEWNPKY-NLLAYAGDDKN----KYQADE 282
              ED   D        T H     +  +N V WNPK   LLA   DD      KYQ  E
Sbjct: 278 VFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPE 337
Query: 283 GV 284
           G+
Sbjct: 338 GL 339

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 57.4 bits (137), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 81/176 (46%), Gaps = 18/176 (10%)
Query: 14  REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
           + + GHK  V SV  +   + + SGS D+T +VW I+           L GH D V Q+ 
Sbjct: 101 QRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLA-----TLLGHNDWVSQVR 155
Query: 74  WDP-KHAD----LIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPDGTHIAV 125
             P + AD     I +A  DK V+ W+    +   +A+  G N NI   T  PDGT IA 
Sbjct: 156 VVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI--EADFIGHNSNINTLTASPDGTLIAS 213
Query: 126 GNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNA-GCYCIAIDP 180
             +D E+ + ++   K ++      EV  +A   +   ++L    A G    ++DP
Sbjct: 214 AGKDGEIMLWNLAAKKAMYTLSAQDEVFSLA--FSPNRYWLAAATATGIKVFSLDP 267

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 81/176 (46%), Gaps = 18/176 (10%)
Query: 14  REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
           + + GHK  V SV  +   + + SGS D+T +VW I+           L GH D V Q+ 
Sbjct: 101 QRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLAT-----LLGHNDWVSQVR 155
Query: 74  WDP-KHAD----LIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPDGTHIAV 125
             P + AD     I +A  DK V+ W+    +   +A+  G N NI   T  PDGT IA 
Sbjct: 156 VVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI--EADFIGHNSNINTLTASPDGTLIAS 213
Query: 126 GNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNA-GCYCIAIDP 180
             +D E+ + ++   K ++      EV  +A   +   ++L    A G    ++DP
Sbjct: 214 AGKDGEIMLWNLAAKKAMYTLSAQDEVFSLA--FSPNRYWLAAATATGIKVFSLDP 267

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 81/176 (46%), Gaps = 18/176 (10%)
Query: 14  REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
           + + GHK  V SV  +   + + SGS D+T +VW I+           L GH D V Q+ 
Sbjct: 101 QRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLA-----TLLGHNDWVSQVR 155
Query: 74  WDP-KHAD----LIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPDGTHIAV 125
             P + AD     I +A  DK V+ W+    +   +A+  G N NI   T  PDGT IA 
Sbjct: 156 VVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI--EADFIGHNSNINTLTASPDGTLIAS 213
Query: 126 GNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNA-GCYCIAIDP 180
             +D E+ + ++   K ++      EV  +A   +   ++L    A G    ++DP
Sbjct: 214 AGKDGEIMLWNLAAKKAMYTLSAQDEVFSLA--FSPNRYWLAAATATGIKVFSLDP 267

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 80/177 (45%), Gaps = 18/177 (10%)
Query: 14  REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
           + + GHK  V SV  +   + + SGS D+T +VW I+           L GH D V Q+ 
Sbjct: 101 QRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIKGQCLA-----TLLGHNDWVSQVR 155
Query: 74  WDP-KHAD----LIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPDGTHIAV 125
             P + AD     I +A  DK V+ W+    +   +A+  G N NI   T  PDGT IA 
Sbjct: 156 VVPNEKADDDSVTIISAGNDKXVKAWNLNQFQI--EADFIGHNSNINTLTASPDGTLIAS 213
Query: 126 GNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNA-GCYCIAIDPM 181
             +D E+ + ++   K  +      EV  +A   +   ++L    A G    ++DP 
Sbjct: 214 AGKDGEIXLWNLAAKKAXYTLSAQDEVFSLA--FSPNRYWLAAATATGIKVFSLDPQ 268

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 75/174 (43%), Gaps = 12/174 (6%)
Query: 13  SREYTGHKKKVHSVAWNC-TGTKLASGSVDQTARVWHIEPHGHGKVKDIEL-RGHADSVD 70
           SR  TGHK    S  +     T+L +GS DQT  +W +       +   E   GH   V 
Sbjct: 150 SRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVL 209
Query: 71  QLCWDPKHADLIATASGDKTVRLWDAR--SGKCSQQAELSGENINITYKPDGTHIAVGNR 128
            L  +  +A++  + S D TVRLWD R  S          G+  ++ + PDG     G+ 
Sbjct: 210 SLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSD 269
Query: 129 DDELTILDVRKFK--PIHRRKFGYEVNE------IAWNMTGEMFFLTTGNAGCY 174
           D    + D+R      ++ R+     NE      +A++++G + F    N  CY
Sbjct: 270 DGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCY 323

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/219 (22%), Positives = 97/219 (44%), Gaps = 34/219 (15%)
Query: 13  SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQL 72
           +R + GH K V SVA++    ++ SGS D+T ++W+        V+D     H++ V  +
Sbjct: 121 TRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQD---ESHSEWVSCV 177
Query: 73  CWDPKHADLIATASG-DKTVRLWDARSGKC-SQQAELSGENINITYKPDGTHIAVGNRDD 130
            + P  ++ I  + G DK V++W+  + K  +     +G    +T  PDG+  A G +D 
Sbjct: 178 RFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDG 237
Query: 131 ELTILDVRKFKPIHRRKFGYEVNEIA------------------WNMTGEMF-------F 165
           +  + D+ + K ++    G  +N +                   W++ G++         
Sbjct: 238 QAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEV 297
Query: 166 LTTGNAG----CYCIAIDPMGRYFAVGSADSLVSLWDIS 200
           ++T +      C  +A    G+    G  D+LV +W ++
Sbjct: 298 ISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVT 336

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/219 (22%), Positives = 97/219 (44%), Gaps = 34/219 (15%)
Query: 13  SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQL 72
           +R + GH K V SVA++    ++ SGS D+T ++W+        V+D     H++ V  +
Sbjct: 98  TRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQD---ESHSEWVSCV 154
Query: 73  CWDPKHADLIATASG-DKTVRLWDARSGKC-SQQAELSGENINITYKPDGTHIAVGNRDD 130
            + P  ++ I  + G DK V++W+  + K  +     +G    +T  PDG+  A G +D 
Sbjct: 155 RFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDG 214
Query: 131 ELTILDVRKFKPIHRRKFGYEVNEIA------------------WNMTGEMF-------F 165
           +  + D+ + K ++    G  +N +                   W++ G++         
Sbjct: 215 QAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEV 274
Query: 166 LTTGNAG----CYCIAIDPMGRYFAVGSADSLVSLWDIS 200
           ++T +      C  +A    G+    G  D+LV +W ++
Sbjct: 275 ISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVT 313

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 74/195 (37%), Gaps = 24/195 (12%)
Query: 12  HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQ 71
           H    +GH ++V  + W   G  LASG  D    VW   P   G V       H  +V  
Sbjct: 142 HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKA 201
Query: 72  LCWDPKHADLIATASG--DKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGN-- 127
           + W P  ++++AT  G  D+ +R+W+  SG C    +   +  +I + P    +  G+  
Sbjct: 202 VAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGF 261
Query: 128 RDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAV 187
             ++L I        +   K            T  +  LT          + P G   A 
Sbjct: 262 AQNQLVIWKYPTMAKVAELK----------GHTSRVLSLT----------MSPDGATVAS 301
Query: 188 GSADSLVSLWDISEM 202
            +AD  + LW   E+
Sbjct: 302 AAADETLRLWRCFEL 316

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 95/212 (44%), Gaps = 31/212 (14%)
Query: 88  DKTVRLWDARSGKCSQ--QAELSGENIN-ITYKPDGTHIAVGNRDDELTILDVRKFKPI- 143
           D +V LW A SG   Q  Q E  GE I+ + +  +G ++AVG    E+ + DV++ K + 
Sbjct: 44  DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 103
Query: 144 HRRKFGYEVNEIAWN------------------MTGEMFFLT-TGNAGCYC-IAIDPMGR 183
           +       V  ++WN                     E    T +G++   C +   P GR
Sbjct: 104 NMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGR 163
Query: 184 YFAVGSADSLVSLWDISE----MLCVRTFTKLEWPVRTISFSHTGDYIAS---ASEDLFI 236
           + A G  D+LV++W  +      + ++TFT+ +  V+ +++      + +    + D  I
Sbjct: 164 HLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHI 223
Query: 237 DISNVHTGRTVHQIPCRAAMNSVEWNPKYNLL 268
            I NV +G  +  +   + + S+ W+P Y  L
Sbjct: 224 RIWNVCSGACLSAVDAHSQVCSILWSPHYKEL 255

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 54.7 bits (130), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 102/236 (43%), Gaps = 37/236 (15%)
Query: 16   YTGHKKKVHSVAWNCTGTK---LASGSVDQ-TARVWHIEPHGHGKVKDIELRGHADSVDQ 71
            +TGH    HS    C  +    LA  ++ Q    +W+I+     ++K  + RGH   V  
Sbjct: 843  HTGH----HSTIQYCDFSPYDHLAVIALSQYCVELWNID----SRLKVADCRGHLSWVHG 894
Query: 72   LCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDE 131
            + + P  +  + TAS D+T+R+W+ +   C   A +  + I++ ++ + T +        
Sbjct: 895  VMFSPDGSSFL-TASDDQTIRVWETKK-VCKNSAIVLKQEIDVVFQENETMV-------- 944
Query: 132  LTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSAD 191
            L + ++R  + I  +             TG++ +L      C C++  P   Y A G  D
Sbjct: 945  LAVDNIRGLQLIAGK-------------TGQIDYLPEAQVSCCCLS--PHLEYVAFGDED 989
Query: 192  SLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTV 247
              + + ++       +    +  VR I F+  G  + S+SED  I + N  TG  V
Sbjct: 990  GAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV 1045

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 54.7 bits (130), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 102/236 (43%), Gaps = 37/236 (15%)
Query: 16   YTGHKKKVHSVAWNCTGTK---LASGSVDQ-TARVWHIEPHGHGKVKDIELRGHADSVDQ 71
            +TGH    HS    C  +    LA  ++ Q    +W+I+     ++K  + RGH   V  
Sbjct: 836  HTGH----HSTIQYCDFSPYDHLAVIALSQYCVELWNID----SRLKVADCRGHLSWVHG 887
Query: 72   LCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDE 131
            + + P  +  + TAS D+T+R+W+ +   C   A +  + I++ ++ + T +        
Sbjct: 888  VMFSPDGSSFL-TASDDQTIRVWETKK-VCKNSAIVLKQEIDVVFQENETMV-------- 937
Query: 132  LTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSAD 191
            L + ++R  + I  +             TG++ +L      C C++  P   Y A G  D
Sbjct: 938  LAVDNIRGLQLIAGK-------------TGQIDYLPEAQVSCCCLS--PHLEYVAFGDED 982
Query: 192  SLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTV 247
              + + ++       +    +  VR I F+  G  + S+SED  I + N  TG  V
Sbjct: 983  GAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV 1038

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 54.3 bits (129), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 50/217 (23%), Positives = 80/217 (36%), Gaps = 24/217 (11%)
Query: 12  HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQ 71
           H    +GH ++V  + W   G  LASG  D    VW   P   G V       H  +V  
Sbjct: 233 HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKA 292
Query: 72  LCWDPKHADLIATASG--DKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGN-- 127
           + W P  ++++AT  G  D+ +R+W+  SG C    +   +  +I + P    +  G+  
Sbjct: 293 VAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGF 352
Query: 128 RDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAV 187
             ++L I        +   K            T  +  LT          + P G   A 
Sbjct: 353 AQNQLVIWKYPTMAKVAELK----------GHTSRVLSLT----------MSPDGATVAS 392
Query: 188 GSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTG 224
            +AD  + LW   E+   R   + +      S  H G
Sbjct: 393 AAADETLRLWRCFELDPARRREREKASAAKSSLIHQG 429

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 96/216 (44%), Gaps = 39/216 (18%)
Query: 88  DKTVRLWDARSGKCSQ--QAELSGENIN-ITYKPDGTHIAVGNRDDELTILDVRKFKPIH 144
           D +V LW A SG   Q  Q E  GE I+ + +  +G ++AVG    E+ + DV++ K + 
Sbjct: 135 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 194
Query: 145 RR-KFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAID------------------------ 179
                   V  ++WN     + L++G+   +    D                        
Sbjct: 195 NMTSHSARVGSLSWN----SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 250
Query: 180 PMGRYFAVGSADSLVSLWDISE----MLCVRTFTKLEWPVRTISFSH-TGDYIAS--ASE 232
           P GR+ A G  D+LV++W  +      + ++TFT+ +  V+ +++     + +A+   + 
Sbjct: 251 PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTS 310
Query: 233 DLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLL 268
           D  I I NV +G  +  +   + + S+ W+P Y  L
Sbjct: 311 DRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKEL 346

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 54.3 bits (129), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 50/217 (23%), Positives = 80/217 (36%), Gaps = 24/217 (11%)
Query: 12  HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQ 71
           H    +GH ++V  + W   G  LASG  D    VW   P   G V       H  +V  
Sbjct: 222 HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKA 281
Query: 72  LCWDPKHADLIATASG--DKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGN-- 127
           + W P  ++++AT  G  D+ +R+W+  SG C    +   +  +I + P    +  G+  
Sbjct: 282 VAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGF 341
Query: 128 RDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAV 187
             ++L I        +   K            T  +  LT          + P G   A 
Sbjct: 342 AQNQLVIWKYPTMAKVAELK----------GHTSRVLSLT----------MSPDGATVAS 381
Query: 188 GSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTG 224
            +AD  + LW   E+   R   + +      S  H G
Sbjct: 382 AAADETLRLWRCFELDPARRREREKASAAKSSLIHQG 418

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 94/212 (44%), Gaps = 31/212 (14%)
Query: 88  DKTVRLWDARSGKCSQ--QAELSGENIN-ITYKPDGTHIAVGNRDDELTILDVRKFKPIH 144
           D +V LW A SG   Q  Q E  GE I+ + +  +G ++AVG    E+ + DV++ K + 
Sbjct: 124 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 183
Query: 145 RR-KFGYEVNEIAWN------------------MTGEMFFLT-TGNAGCYC-IAIDPMGR 183
                   V  ++WN                     E    T +G++   C +   P GR
Sbjct: 184 NMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGR 243
Query: 184 YFAVGSADSLVSLWDISE----MLCVRTFTKLEWPVRTISFSHTGDYIAS---ASEDLFI 236
           + A G  D+LV++W  +      + ++TFT+ +  V+ +++      + +    + D  I
Sbjct: 244 HLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHI 303
Query: 237 DISNVHTGRTVHQIPCRAAMNSVEWNPKYNLL 268
            I NV +G  +  +   + + S+ W+P Y  L
Sbjct: 304 RIWNVCSGACLSAVDAHSQVCSILWSPHYKEL 335

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 86/196 (43%), Gaps = 18/196 (9%)
Query: 16  YTGHKKKVHSVAWNCTGTKLASGSV--DQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
           +TGH   V  VAW+     L  GSV  DQ   +W    +   K   + +  H   V+ L 
Sbjct: 225 FTGHSAVVEDVAWHLLHESLF-GSVADDQKLMIWDTRSNTTSKPSHL-VDAHTAEVNCLS 282
Query: 74  WDPKHADLIATASGDKTVRLWDARSGKCSQQAELS--GENINITYKP-DGTHIAVGNRDD 130
           ++P    ++AT S DKTV LWD R+ K       S   E   + + P + T +A    D 
Sbjct: 283 FNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDR 342
Query: 131 ELTILDVRKFKPIHRRKFGYEVN-EIAWNMTGEMFFLTTGN-AGCYCIAIDPMGRYFAVG 188
            L + D+         K G E + E A +   E+ F+  G+ A     + +P   +    
Sbjct: 343 RLNVWDL--------SKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICS 394
Query: 189 -SADSLVSLWDISEML 203
            S D+++ +W ++E +
Sbjct: 395 VSEDNIMQIWQMAENI 410

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 84/191 (43%), Gaps = 27/191 (14%)
Query: 59  DIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKP 118
           D+ LRGH      L W+   +  + +AS D TV LWD  +G   ++ ++           
Sbjct: 172 DLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAG--PKEGKIV---------- 219
Query: 119 DGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNE---IAW----NMTGEMFFLTTGN- 170
           D   I  G+      +++   +  +H   FG   ++   + W    N T +   L   + 
Sbjct: 220 DAKAIFTGHS----AVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHT 275
Query: 171 AGCYCIAIDPMGRY-FAVGSADSLVSLWDISEM-LCVRTFTKLEWPVRTISFS-HTGDYI 227
           A   C++ +P   +  A GSAD  V+LWD+  + L + TF   +  +  + +S H    +
Sbjct: 276 AEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETIL 335
Query: 228 ASASEDLFIDI 238
           AS+  D  +++
Sbjct: 336 ASSGTDRRLNV 346

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 76/163 (46%), Gaps = 11/163 (6%)
Query: 18  GHKKKVHSVAWNCTGT-KLASGSVDQTARVWHIEP-HGHGKVKDIE--LRGHADSVDQLC 73
           GH+K+ + ++WN   +  L S S D T  +W I      GK+ D +    GH+  V+ + 
Sbjct: 177 GHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVA 236
Query: 74  WDPKHADLIATASGDKTVRLWDARSGKCSQQAEL----SGENINITYKPDGTHI-AVGNR 128
           W   H  L  + + D+ + +WD RS   S+ + L    + E   +++ P    I A G+ 
Sbjct: 237 WHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSA 296
Query: 129 DDELTILDVRKFK-PIHR-RKFGYEVNEIAWNMTGEMFFLTTG 169
           D  + + D+R  K  +H       E+ ++ W+   E    ++G
Sbjct: 297 DKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSG 339

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 83/191 (43%), Gaps = 27/191 (14%)
Query: 59  DIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKP 118
           D+ LRGH      L W+   +  + +AS D TV LWD  +G   ++ ++           
Sbjct: 172 DLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAG--PKEGKIV---------- 219
Query: 119 DGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNE---IAW----NMTGEMFFLTTGN- 170
           D   I  G+      +++   +  +H   FG   ++     W    N T +   L   + 
Sbjct: 220 DAKAIFTGHS----AVVEDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHT 275
Query: 171 AGCYCIAIDPMGRY-FAVGSADSLVSLWDISEM-LCVRTFTKLEWPVRTISFS-HTGDYI 227
           A   C++ +P   +  A GSAD  V+LWD+  + L + TF   +  +  + +S H    +
Sbjct: 276 AEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETIL 335
Query: 228 ASASEDLFIDI 238
           AS+  D  +++
Sbjct: 336 ASSGTDRRLNV 346

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 56/261 (21%), Positives = 106/261 (40%), Gaps = 35/261 (13%)
Query: 48  HIEPHGHGKVKDIE-LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAE 106
           +I+P G  +++    LRGH   +  + W    + L+ +AS D  + +WD+ +        
Sbjct: 47  NIDPVGRIQMRTRRTLRGHLAKIYAMHWGTD-SRLLVSASQDGKLIIWDSYTTNKVHAIP 105
Query: 107 L-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR--RKFGYEVNEIAWN--MTG 161
           L S   +   Y P G ++A G  D+  +I +++  +   R  R+       ++    +  
Sbjct: 106 LRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD 165
Query: 162 EMFFLTTGNAGC---------------------YCIAIDPMGRYFAVGSADSLVSLWDIS 200
                ++G+  C                       +++ P  R F  G+ D+   LWD+ 
Sbjct: 166 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 225
Query: 201 EMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTV-----HQIPCRAA 255
           E +C +TFT  E  +  I F   G+  A+ S+D    + ++   + +       I C   
Sbjct: 226 EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIIC--G 283
Query: 256 MNSVEWNPKYNLLAYAGDDKN 276
           + SV ++    LL    DD N
Sbjct: 284 ITSVSFSKSGRLLLAGYDDFN 304

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 56/261 (21%), Positives = 106/261 (40%), Gaps = 35/261 (13%)
Query: 48  HIEPHGHGKVKDIE-LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAE 106
           +I+P G  +++    LRGH   +  + W    + L+ +AS D  + +WD+ +        
Sbjct: 36  NIDPVGRIQMRTRRTLRGHLAKIYAMHWGTD-SRLLVSASQDGKLIIWDSYTTNKVHAIP 94
Query: 107 L-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR--RKFGYEVNEIAWN--MTG 161
           L S   +   Y P G ++A G  D+  +I +++  +   R  R+       ++    +  
Sbjct: 95  LRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD 154
Query: 162 EMFFLTTGNAGC---------------------YCIAIDPMGRYFAVGSADSLVSLWDIS 200
                ++G+  C                       +++ P  R F  G+ D+   LWD+ 
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 214
Query: 201 EMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTV-----HQIPCRAA 255
           E +C +TFT  E  +  I F   G+  A+ S+D    + ++   + +       I C   
Sbjct: 215 EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIIC--G 272
Query: 256 MNSVEWNPKYNLLAYAGDDKN 276
           + SV ++    LL    DD N
Sbjct: 273 ITSVSFSKSGRLLLAGYDDFN 293

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 56/261 (21%), Positives = 106/261 (40%), Gaps = 35/261 (13%)
Query: 48  HIEPHGHGKVKDIE-LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAE 106
           +I+P G  +++    LRGH   +  + W    + L+ +AS D  + +WD+ +        
Sbjct: 36  NIDPVGRIQMRTRRTLRGHLAKIYAMHWGTD-SRLLVSASQDGKLIIWDSYTTNKVHAIP 94
Query: 107 L-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR--RKFGYEVNEIAWN--MTG 161
           L S   +   Y P G ++A G  D+  +I +++  +   R  R+       ++    +  
Sbjct: 95  LRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD 154
Query: 162 EMFFLTTGNAGC---------------------YCIAIDPMGRYFAVGSADSLVSLWDIS 200
                ++G+  C                       +++ P  R F  G+ D+   LWD+ 
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 214
Query: 201 EMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTV-----HQIPCRAA 255
           E +C +TFT  E  +  I F   G+  A+ S+D    + ++   + +       I C   
Sbjct: 215 EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIIC--G 272
Query: 256 MNSVEWNPKYNLLAYAGDDKN 276
           + SV ++    LL    DD N
Sbjct: 273 ITSVSFSKSGRLLLAGYDDFN 293

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 70/139 (50%), Gaps = 9/139 (6%)
Query: 11  LHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIE-LRGHADSV 69
           + +R + GH K V SVA++    ++ S S D+T ++W+    G  K    E   GH D V
Sbjct: 463 VSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNT--LGECKYTISEGGEGHRDWV 520
Query: 70  DQLCWDPKHAD-LIATASGDKTVRLWDARSGKCSQQAELSGEN---INITYKPDGTHIAV 125
             + + P      I +AS DKTV++W+  +  C  ++ L+G       +   PDG+  A 
Sbjct: 521 SCVRFSPNTLQPTIVSASWDKTVKVWNLSN--CKLRSTLAGHTGYVSTVAVSPDGSLCAS 578
Query: 126 GNRDDELTILDVRKFKPIH 144
           G +D  + + D+ + K ++
Sbjct: 579 GGKDGVVLLWDLAEGKKLY 597

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 47.4 bits (111), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 53/236 (22%), Positives = 101/236 (42%), Gaps = 35/236 (14%)
Query: 62  LRGHADSVDQLCWDPKHADLIATASGDKTVRLW----DARSGKCSQQAELSGEN---INI 114
           +R H D V  +     +AD+I +AS DK++ LW    D ++   +Q+  L+G +    ++
Sbjct: 378 MRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQR-RLTGHSHFVEDV 436
Query: 115 TYKPDGTHIAVGNRDDELTILDV------RKF----KPIHRRKFGYEVNEIA-------- 156
               DG     G+ D EL + D+      R+F    K +    F  +  +I         
Sbjct: 437 VLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTI 496
Query: 157 --WNMTGE-MFFLTTGNAG----CYCIAIDPMGRYFAVGSA--DSLVSLWDISEMLCVRT 207
             WN  GE  + ++ G  G      C+   P      + SA  D  V +W++S      T
Sbjct: 497 KLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRST 556
Query: 208 FTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNP 263
                  V T++ S  G   AS  +D  + + ++  G+ ++ +   + ++++ ++P
Sbjct: 557 LAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSP 612

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 51.6 bits (122), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 56/261 (21%), Positives = 106/261 (40%), Gaps = 35/261 (13%)
Query: 48  HIEPHGHGKVKDIE-LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAE 106
           +I+P G  +++    LRGH   +  + W    + L+ +AS D  + +WD+ +        
Sbjct: 36  NIDPVGRIQMRTRRTLRGHLAKIYAMHWGTD-SRLLLSASQDGKLIIWDSYTTNKVHAIP 94
Query: 107 L-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR--RKFGYEVNEIAWN--MTG 161
           L S   +   Y P G ++A G  D+  +I +++  +   R  R+       ++    +  
Sbjct: 95  LRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD 154
Query: 162 EMFFLTTGNAGC---------------------YCIAIDPMGRYFAVGSADSLVSLWDIS 200
                ++G+  C                       +++ P  R F  G+ D+   LWD+ 
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 214
Query: 201 EMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTV-----HQIPCRAA 255
           E +C +TFT  E  +  I F   G+  A+ S+D    + ++   + +       I C   
Sbjct: 215 EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIIC--G 272
Query: 256 MNSVEWNPKYNLLAYAGDDKN 276
           + SV ++    LL    DD N
Sbjct: 273 ITSVSFSKSGRLLLAGYDDFN 293

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 56/261 (21%), Positives = 106/261 (40%), Gaps = 35/261 (13%)
Query: 48  HIEPHGHGKVKDIE-LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAE 106
           +I+P G  +++    LRGH   +  + W    + L+ +AS D  + +WD+ +        
Sbjct: 36  NIDPVGRIQMRTRRTLRGHLAKIYAMHWGTD-SRLLLSASQDGKLIIWDSYTTNKVHAIP 94
Query: 107 L-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR--RKFGYEVNEIAWN--MTG 161
           L S   +   Y P G ++A G  D+  +I +++  +   R  R+       ++    +  
Sbjct: 95  LRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD 154
Query: 162 EMFFLTTGNAGC---------------------YCIAIDPMGRYFAVGSADSLVSLWDIS 200
                ++G+  C                       +++ P  R F  G+ D+   LWD+ 
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 214
Query: 201 EMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTV-----HQIPCRAA 255
           E +C +TFT  E  +  I F   G+  A+ S+D    + ++   + +       I C   
Sbjct: 215 EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIIC--G 272
Query: 256 MNSVEWNPKYNLLAYAGDDKN 276
           + SV ++    LL    DD N
Sbjct: 273 ITSVSFSKSGRLLLAGYDDFN 293

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/205 (22%), Positives = 88/205 (42%), Gaps = 14/205 (6%)
Query: 60  IELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGEN-----INI 114
           ++L GH   V  L +   H  ++ + S D+TVR+WD + G C+   E  G N     ++I
Sbjct: 156 LQLSGHDGGVWALKY--AHGGILVSGSTDRTVRVWDIKKGCCTHVFE--GHNSTVRCLDI 211
Query: 115 TYKPDGTHIAVGNRDDELTILDVRKFK--PIHRRKFGYEVNEIAWNMTGEMFFLTTGNAG 172
               +  +I  G+RD+ L +  + K    P H  +  Y +  +        +F+      
Sbjct: 212 VEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPL--VFHTPEENPYFVGVLRGH 269
Query: 173 CYCI-AIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASAS 231
              +  +   G     GS D+ + +WD+++M C+   +     + +  + H      SAS
Sbjct: 270 MASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISAS 329
Query: 232 EDLFIDISNVHTGRTVHQIPCRAAM 256
            D  I I ++  G  ++ +    A+
Sbjct: 330 MDTTIRIWDLENGELMYTLQGHTAL 354

>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice Length = 753

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 102/232 (43%), Gaps = 26/232 (11%)
Query: 18  GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW-DP 76
            H + +H    +  G +LA+ S D+T +++ +E   H  +    L GH   V ++ W  P
Sbjct: 7   AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDT--LTGHEGPVWRVDWAHP 64
Query: 77  KHADLIATASGDKTVRLWDARSGKCSQQA--ELSGENIN-ITYKPD--GTHIAVGNRDDE 131
           K   ++A+ S D  V +W   +G+ SQ A   +   ++N + + P   G  + V + D +
Sbjct: 65  KFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGK 124
Query: 132 LTILDVRK---FKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVG 188
           +++++ ++     PI        VN  +W         T    G +    +   R F  G
Sbjct: 125 VSVVEFKENGTTSPIIIDAHAIGVNSASWAPA------TIEEDGEHNGTKE--SRKFVTG 176
Query: 189 SADSLVSLW----DISEMLCVRTFTKLEWPVRTISFSHT---GDYIASASED 233
            AD+LV +W    D    +   T       VR +++S T     Y+AS S+D
Sbjct: 177 GADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQD 228

>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade Length = 379

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 59/232 (25%), Positives = 104/232 (44%), Gaps = 26/232 (11%)
Query: 18  GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW-DP 76
            H + +H    +  G +LA+ S D+T +++ +E   H K+ D  L GH   V ++ W  P
Sbjct: 9   AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-KLIDT-LTGHEGPVWRVDWAHP 66
Query: 77  KHADLIATASGDKTVRLWDARSGKCSQQA--ELSGENIN-ITYKPD--GTHIAVGNRDDE 131
           K   ++A+ S D  V +W   +G+ SQ A   +   ++N + + P   G  + V + D +
Sbjct: 67  KFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGK 126
Query: 132 LTILDVRK---FKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVG 188
           +++++ ++     PI        VN  +W         T    G +    +   R F  G
Sbjct: 127 VSVVEFKENGTTSPIIIDAHAIGVNSASWAPA------TIEEDGEHNGTKE--SRKFVTG 178
Query: 189 SADSLVSLW----DISEMLCVRTFTKLEWPVRTISFSHT---GDYIASASED 233
            AD+LV +W    D    +   T       VR +++S T     Y+AS S+D
Sbjct: 179 GADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQD 230

>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 297

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 104/232 (44%), Gaps = 26/232 (11%)
Query: 18  GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW-DP 76
            H + +H    +  G ++A+ S D+T +++ +E   H K+ D  L GH   V ++ W  P
Sbjct: 7   AHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH-KLIDT-LTGHEGPVWRVDWAHP 64
Query: 77  KHADLIATASGDKTVRLWDARSGKCSQQA--ELSGENIN-ITYKPD--GTHIAVGNRDDE 131
           K   ++A+ S D  V +W   +G+ SQ A   +   ++N + + P   G  + V + D +
Sbjct: 65  KFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGK 124
Query: 132 LTILDVRK---FKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVG 188
           +++++ ++     PI        VN  +W         T    G +    +   R F  G
Sbjct: 125 VSVVEFKENGTTSPIIIDAHAIGVNSASWAPA------TIEEDGEHNGTKE--SRKFVTG 176
Query: 189 SADSLVSLW----DISEMLCVRTFTKLEWPVRTISFSHT---GDYIASASED 233
            AD+LV +W    D    +   T       VR +++S T     Y+AS S+D
Sbjct: 177 GADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQD 228

>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 8/121 (6%)
Query: 18  GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK 77
           GH  +V  +AW   G +LASG  D   ++W         +       H  +V  + W P 
Sbjct: 215 GHSSEVCGLAWRSDGLQLASGGNDNVVQIW----DARSSIPKFTKTNHNAAVKAVAWCPW 270
Query: 78  HADLIATASG--DKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAV--GNRDDELT 133
            ++L+AT  G  DK +  W+A +G      +   +  ++ + P    I    G  D+ L+
Sbjct: 271 QSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLS 330
Query: 134 I 134
           I
Sbjct: 331 I 331

>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Native Version Length = 297

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 59/232 (25%), Positives = 104/232 (44%), Gaps = 26/232 (11%)
Query: 18  GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW-DP 76
            H + +H    +  G +LA+ S D+T +++ +E   H K+ D  L GH   V ++ W  P
Sbjct: 7   AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-KLIDT-LTGHEGPVWRVDWAHP 64
Query: 77  KHADLIATASGDKTVRLWDARSGKCSQQA--ELSGENIN-ITYKPD--GTHIAVGNRDDE 131
           K   ++A+ S D  V +W   +G+ SQ A   +   ++N + + P   G  + V + D +
Sbjct: 65  KFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGK 124
Query: 132 LTILDVRK---FKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVG 188
           +++++ ++     PI        VN  +W         T    G +    +   R F  G
Sbjct: 125 VSVVEFKENGTTSPIIIDAHAIGVNSASWAPA------TIEEDGEHNGTKE--SRKFVTG 176
Query: 189 SADSLVSLW----DISEMLCVRTFTKLEWPVRTISFSHT---GDYIASASED 233
            AD+LV +W    D    +   T       VR +++S T     Y+AS S+D
Sbjct: 177 GADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQD 228

>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 57/129 (44%), Gaps = 7/129 (5%)
Query: 18  GHKKKVHSVAWNC-TGTKLASGSVDQTARVWHIEPHG---HGKVKDIELRGHADSVDQLC 73
           GH   V  +AW       +ASGS D T  VW I   G     +   I L GH   V  + 
Sbjct: 79  GHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 74  WDPKHADLIATASGDKTVRLWDARSGKC--SQQAELSGENI-NITYKPDGTHIAVGNRDD 130
           W P   +++ +A  D  + +WD  +G    +   ++  + I ++ +  DG  I    RD 
Sbjct: 139 WHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDK 198
Query: 131 ELTILDVRK 139
            + +++ RK
Sbjct: 199 RVRVIEPRK 207

>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 68/161 (42%), Gaps = 10/161 (6%)
Query: 18  GHKKKVHSVAWNCT--GTKLASGSVDQTARVWHIEPHG---HGKVKDIELRGHADSVDQL 72
           GH   V  +AW C      +ASGS D T  VW I   G     +   I L GH   V  +
Sbjct: 79  GHTAPVLDIAW-CPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIV 137
Query: 73  CWDPKHADLIATASGDKTVRLWDARSGKC--SQQAELSGENI-NITYKPDGTHIAVGNRD 129
            W P   +++ +A  D  + +WD  +G    +   ++  + I ++ +  DG  I    RD
Sbjct: 138 AWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRD 197
Query: 130 DELTILDVRKFKPIHRRKFGYE-VNEIAWNMTGEMFFLTTG 169
             + +++ RK   +  +   +E    +      E   LTTG
Sbjct: 198 KRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTG 238

>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor Eif3i Complex With Eif3b C-Terminus (655-700) Length = 369

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 63/286 (22%), Positives = 107/286 (37%), Gaps = 34/286 (11%)
Query: 17  TGHKKKVHSVAWNCTGTKLASGSVDQTARVWH-IEPHGHGKVKDIELRGHAD---SVDQL 72
           TGH++ +  V +N  G  L S S D +A VW+ +     G      L GH     S+D  
Sbjct: 29  TGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGT-----LDGHTGTIWSIDVD 83
Query: 73  CWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDEL 132
           C+         T S D +++LWD  +G+C    +       + + P G +         L
Sbjct: 84  CF----TKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYF--------L 131
Query: 133 TILDVRKFKP-------IHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYF 185
            ILD     P       I R    +E+ +++     ++     G            G+Y 
Sbjct: 132 AILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKI-ITHEGLDAATVAGWSTKGKYI 190
Query: 186 AVGSADSLVSLWDISEML-CVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTG 244
             G  D  +S +D+S     V +    E  +  + FS    Y  ++S D    + +V T 
Sbjct: 191 IAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTL 250
Query: 245 RTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNK----YQADEGVFR 286
           + + +      +N+    P    +   G  + K      A+EG F 
Sbjct: 251 QVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFE 296

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/205 (21%), Positives = 86/205 (41%), Gaps = 14/205 (6%)
Query: 60  IELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGEN-----INI 114
           ++L GH   V  L +   H  ++ + S D+TVR+WD + G C+   E  G N     ++I
Sbjct: 156 LQLSGHDGGVWALKY--AHGGILVSGSTDRTVRVWDIKKGCCTHVFE--GHNSTVRCLDI 211
Query: 115 TYKPDGTHIAVGNRDDELTILDVRKFK--PIHRRKFGYEVNEIAWNMTGEMFFLTTGNAG 172
               +  +I  G+RD+ L +  + K    P H  +  Y +  +        +F+      
Sbjct: 212 VEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPL--VFHTPEENPYFVGVLRGH 269
Query: 173 CYCI-AIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASAS 231
              +  +   G     GS D+ + +WD+++  C+   +     + +  + H      SAS
Sbjct: 270 XASVRTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISAS 329
Query: 232 EDLFIDISNVHTGRTVHQIPCRAAM 256
            D  I I ++  G   + +    A+
Sbjct: 330 XDTTIRIWDLENGELXYTLQGHTAL 354

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 83/193 (43%), Gaps = 16/193 (8%)
Query: 16  YTGHKKKVHSVAWNCTGTKLASGSV--DQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
           +TGH   V  VAW+     L  GSV  DQ   +W    +   K     +  H   V+ L 
Sbjct: 227 FTGHTAVVEDVAWHLLHESLF-GSVADDQKLMIWDTRNNNTSKPSHT-VDAHTAEVNCLS 284
Query: 74  WDPKHADLIATASGDKTVRLWDARSGKCSQQAELS--GENINITYKP-DGTHIAVGNRDD 130
           ++P    ++AT S DKTV LWD R+ K    +  S   E   + + P + T +A    D 
Sbjct: 285 FNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDR 344
Query: 131 ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGN-AGCYCIAIDPMGRYFAVG- 188
            L + D+ K           +  E A +   E+ F+  G+ A     + +P   +     
Sbjct: 345 RLHVWDLSKIG-------EEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSV 397
Query: 189 SADSLVSLWDISE 201
           S D+++ +W ++E
Sbjct: 398 SEDNIMQVWQMAE 410

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 83/193 (43%), Gaps = 16/193 (8%)
Query: 16  YTGHKKKVHSVAWNCTGTKLASGSV--DQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
           +TGH   V  VAW+     L  GSV  DQ   +W    +   K     +  H   V+ L 
Sbjct: 229 FTGHTAVVEDVAWHLLHESLF-GSVADDQKLMIWDTRNNNTSKPSHT-VDAHTAEVNCLS 286
Query: 74  WDPKHADLIATASGDKTVRLWDARSGKCSQQAELS--GENINITYKP-DGTHIAVGNRDD 130
           ++P    ++AT S DKTV LWD R+ K    +  S   E   + + P + T +A    D 
Sbjct: 287 FNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDR 346
Query: 131 ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGN-AGCYCIAIDPMGRYFAVG- 188
            L + D+ K           +  E A +   E+ F+  G+ A     + +P   +     
Sbjct: 347 RLHVWDLSKIG-------EEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSV 399
Query: 189 SADSLVSLWDISE 201
           S D+++ +W ++E
Sbjct: 400 SEDNIMQVWQMAE 412

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 85/218 (38%), Gaps = 34/218 (15%)
Query: 62  LRGHADSVDQLCWD-PKHADLIATASGDKTVRLWDARSGKCSQQAELSGE-NINITYKPD 119
           L+GH + V  LC D  K    I ++S D  V +WD+ +        +     +   Y P 
Sbjct: 60  LKGHGNKV--LCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPS 117
Query: 120 GTHIAVGNRDDELTI----LDVRKFKPIHRRKFGYEVNEI-AWNMT-GEMFFLT-TGNAG 172
           G  IA G  D++ ++     D  +     ++      N + A + T  +M  LT +G+  
Sbjct: 118 GCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGT 177
Query: 173 C---------------------YCIAIDP--MGRYFAVGSADSLVSLWDISEMLCVRTFT 209
           C                      C+ + P   G  F  G  D    +WD+    CV+ F 
Sbjct: 178 CALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFE 237
Query: 210 KLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTV 247
             E  V ++ +  +GD  AS S+D    + ++   R V
Sbjct: 238 THESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREV 275

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 83/193 (43%), Gaps = 16/193 (8%)
Query: 16  YTGHKKKVHSVAWNCTGTKLASGSV--DQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
           +TGH   V  VAW+     L  GSV  DQ   +W    +   K     +  H   V+ L 
Sbjct: 231 FTGHTAVVEDVAWHLLHESLF-GSVADDQKLMIWDTRNNNTSKPSHT-VDAHTAEVNCLS 288
Query: 74  WDPKHADLIATASGDKTVRLWDARSGKCSQQAELS--GENINITYKP-DGTHIAVGNRDD 130
           ++P    ++AT S DKTV LWD R+ K    +  S   E   + + P + T +A    D 
Sbjct: 289 FNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDR 348
Query: 131 ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGN-AGCYCIAIDPMGRYFAVG- 188
            L + D+ K           +  E A +   E+ F+  G+ A     + +P   +     
Sbjct: 349 RLHVWDLSKIGE-------EQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSV 401
Query: 189 SADSLVSLWDISE 201
           S D+++ +W ++E
Sbjct: 402 SEDNIMQVWQMAE 414

>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Selenomethionine Version Length = 297

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 102/232 (43%), Gaps = 26/232 (11%)
Query: 18  GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW-DP 76
            H + +H    +  G + A+ S D+T +++ +E   H K+ D  L GH   V ++ W  P
Sbjct: 7   AHNEXIHDAVXDYYGKRXATCSSDKTIKIFEVEGETH-KLIDT-LTGHEGPVWRVDWAHP 64
Query: 77  KHADLIATASGDKTVRLWDARSGKCSQQA--ELSGENIN-ITYKPD--GTHIAVGNRDDE 131
           K   ++A+ S D  V +W   +G+ SQ A   +   ++N + + P   G  + V + D +
Sbjct: 65  KFGTILASCSYDGKVXIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPXLLVASSDGK 124
Query: 132 LTILDVRK---FKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVG 188
           +++++ ++     PI        VN  +W         T    G +    +   R F  G
Sbjct: 125 VSVVEFKENGTTSPIIIDAHAIGVNSASWAPA------TIEEDGEHNGTKE--SRKFVTG 176
Query: 189 SADSLVSLW----DISEMLCVRTFTKLEWPVRTISFSHT---GDYIASASED 233
            AD+LV +W    D    +   T       VR +++S T     Y AS S+D
Sbjct: 177 GADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYXASVSQD 228

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 89/236 (37%), Gaps = 33/236 (13%)
Query: 8   FKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHAD 67
            + +H R  T   K V+ + ++    K+ SG  D T ++W        ++    L GH  
Sbjct: 123 LQRIHCRSETS--KGVYCLQYD--DQKIVSGLRDNTIKIWDKNTLECKRI----LTGHTG 174
Query: 68  SVDQLCWDPKHADLIATASGDKTVRLWDARSGK--------CSQQAELSGENINITYKPD 119
           SV  L +D +   +I T S D TVR+WD  +G+        C     L   N  +     
Sbjct: 175 SVLCLQYDER---VIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSK 231
Query: 120 GTHIAVGNRDDELTILDVRKFKPIHRRKFG-------YEVNEI------AWNMTGEMFFL 166
              IAV +     T + +R+    HR           Y V+         WN +   F  
Sbjct: 232 DRSIAVWDMASP-TDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVR 290
Query: 167 TTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSH 222
           T          +    R    GS+D+ + LWDI    C+R     E  VR I F +
Sbjct: 291 TLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN 346

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 63/136 (46%), Gaps = 11/136 (8%)
Query: 8   FKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIEL----R 63
           F  +   + T HKK + SVAW    + LA+GS D T  +W  E     +  +++L     
Sbjct: 46  FTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESAD-RTFEMDLLAIIE 104
Query: 64  GHADSVDQLCWDPKHADLIATASGDKTVRLWDA-RSGK----CSQQAELSGENINITYKP 118
           GH + V  + W       +AT S DK+V +W+   SG+     S   E S +  ++ + P
Sbjct: 105 GHENEVKGVAW-SNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP 163
Query: 119 DGTHIAVGNRDDELTI 134
               +A  + DD + I
Sbjct: 164 SEALLASSSYDDTVRI 179

>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX Length = 349

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 72/168 (42%), Gaps = 24/168 (14%)
Query: 17  TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW-D 75
           +GH   VH V ++  G  +A+ S DQ  +V+ ++            R H  S+  + W  
Sbjct: 6   SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWAS 65
Query: 76  PKHADLIATASGDKTVRLW--DARSGKCSQQA--------ELSGENINITYKPD--GTHI 123
           P++  +IA+AS DKTV+LW  D    +CS +         +  G   ++ + P   G  +
Sbjct: 66  PEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKL 125
Query: 124 AVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNA 171
           A    D  L + D    +P   R         +W +T EM  L+   A
Sbjct: 126 ACLGNDGILRLYDA--LEPSDLR---------SWTLTSEMKVLSIPPA 162

>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 86/207 (41%), Gaps = 28/207 (13%)
Query: 7   PFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWH-IEPHGHGKVKDIELR-- 63
           PFK      +  H K VHSV +N  G+  AS   D T  +++ ++    G  +D  L+  
Sbjct: 179 PFK--FKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNV 236
Query: 64  GHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHI 123
            H+ SV  L W P     IA+AS DKT+++W+  + K  +              P GT I
Sbjct: 237 AHSGSVFGLTWSPDGTK-IASASADKTIKIWNVATLKVEKTI------------PVGTRI 283
Query: 124 AVGNRDDELTILDVRK-FKPIHRRKFGYEVNEIAWNMTGEMFFLTTG-NAGCYCIAIDPM 181
                D +L I+  ++    I    F   VN       G +  +  G N     ++    
Sbjct: 284 ----EDQQLGIIWTKQALVSISANGFINFVNP----ELGSIDQVRYGHNKAITALSSSAD 335
Query: 182 GRYFAVGSADSLVSLWDISEMLCVRTF 208
           G+      A+  ++ WDIS  +  R F
Sbjct: 336 GKTLFSADAEGHINSWDISTGISNRVF 362

>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1, Space Group P21 Length = 351

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 72/168 (42%), Gaps = 24/168 (14%)
Query: 17  TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW-D 75
           +GH   VH V ++  G  +A+ S DQ  +V+ ++            R H  S+  + W  
Sbjct: 8   SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWAS 67
Query: 76  PKHADLIATASGDKTVRLW--DARSGKCSQQA--------ELSGENINITYKPD--GTHI 123
           P++  +IA+AS DKTV+LW  D    +CS +         +  G   ++ + P   G  +
Sbjct: 68  PEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKL 127
Query: 124 AVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNA 171
           A    D  L + D    +P   R         +W +T EM  L+   A
Sbjct: 128 ACLGNDGILRLYDA--LEPSDLR---------SWTLTSEMKVLSIPPA 164

>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2 Length = 425

Iteration: 1
 Score = 44.3 bits (103), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 7/133 (5%)
Query: 18  GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK 77
           GH   +  + +N T   L S S D T R+WH    G+G  ++    GH+ S+    W   
Sbjct: 245 GHHGPISVLEFNDTNKLLLSASDDGTLRIWH---GGNGNSQNC-FYGHSQSIVSASW--V 298
Query: 78  HADLIATASGDKTVRLWDARSGKCSQQAELSGENINI-TYKPDGTHIAVGNRDDELTILD 136
             D + + S D +VRLW  +       + + G  I       DG   AV   D ++ + D
Sbjct: 299 GDDKVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYD 358
Query: 137 VRKFKPIHRRKFG 149
           ++K     R  +G
Sbjct: 359 LKKLNSKSRSLYG 371

>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1, Space Group P21212 Length = 351

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 5/98 (5%)
Query: 17  TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW-D 75
           +GH   VH V ++  G  +A+ S DQ  +V+ ++            R H  S+  + W  
Sbjct: 8   SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWAS 67
Query: 76  PKHADLIATASGDKTVRLWDARSGKCSQQAELSGENIN 113
           P++  +IA+AS DKTV+LW+        Q E SG   N
Sbjct: 68  PEYGRIIASASYDKTVKLWEED----PDQEECSGRRWN 101

>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction Between The Nucleoporin Nup98 And The Mrna Export Factor Rae1 Length = 368

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 49/114 (42%), Gaps = 5/114 (4%)
Query: 32  GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV 91
           G  L +GS     R W ++  G    K  ++  H   V  +CW       + TAS DKT 
Sbjct: 54  GNFLIAGSWANDVRCWEVQDSGQTIPKAQQM--HTGPVLDVCWS-DDGSKVFTASCDKTA 110
Query: 92  RLWDARSGKCSQ--QAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPI 143
           ++WD  S +  Q  Q +   + I+    P+ + +  G+ D  L   D R   P+
Sbjct: 111 KMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPM 164

>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein (Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna Repair Length = 435

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 19  HKKKVHSVAWN-CTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK 77
           HKKKV  VA N C    LA+ SVDQT ++W +     GK   +    H   V+  C+ P 
Sbjct: 249 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLR-QVRGKASFLYSLPHRHPVNAACFSPD 307
Query: 78  HADLIATASGDKTVRLWDARSGKC 101
            A L+ T    + +R++ A    C
Sbjct: 308 GARLLTTDQKSE-IRVYSASQWDC 330

>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein (Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna Repair Length = 436

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 19  HKKKVHSVAWN-CTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK 77
           HKKKV  VA N C    LA+ SVDQT ++W +     GK   +    H   V+  C+ P 
Sbjct: 249 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLR-QVRGKASFLYSLPHRHPVNAACFSPD 307
Query: 78  HADLIATASGDKTVRLWDARSGKC 101
            A L+ T    + +R++ A    C
Sbjct: 308 GARLLTTDQKSE-IRVYSASQWDC 330

>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex Length = 436

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 19  HKKKVHSVAWN-CTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK 77
           HKKKV  VA N C    LA+ SVDQT ++W +     GK   +    H   V+  C+ P 
Sbjct: 250 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLR-QVRGKASFLYSLPHRHPVNAACFSPD 308
Query: 78  HADLIATASGDKTVRLWDARSGKC 101
            A L+ T    + +R++ A    C
Sbjct: 309 GARLLTTDQKSE-IRVYSASQWDC 331

>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 17/90 (18%)
Query: 62  LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDAR------------SGKCSQQAELS- 108
           L+GH   +  + W P++  ++ATAS D  V+LWD R            +GK SQ  E + 
Sbjct: 182 LQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESAN 241
Query: 109 ----GENINITYKPDGTHIAVGNRDDELTI 134
               G+   + +  DG H+     D+ + +
Sbjct: 242 TAHNGKVNGLCFTSDGLHLLTVGTDNRMRL 271

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 44/195 (22%), Positives = 80/195 (41%), Gaps = 35/195 (17%)
Query: 59  DIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWD----ARSGKCSQQAELSGENINI 114
           D+ LRGH      L W+P  +  + +AS D T+ LWD     + GK              
Sbjct: 170 DLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVV------------ 217
Query: 115 TYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNE---IAW-----NMTGEMFFL 166
               D   I  G+      +++   +  +H   FG   ++   + W     N +     +
Sbjct: 218 ----DAKTIFTGHT----AVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSV 269
Query: 167 TTGNAGCYCIAIDPMGRY-FAVGSADSLVSLWDISEM-LCVRTFTKLEWPVRTISFS-HT 223
               A   C++ +P   +  A GSAD  V+LWD+  + L + +F   +  +  + +S H 
Sbjct: 270 DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHN 329
Query: 224 GDYIASASEDLFIDI 238
              +AS+  D  +++
Sbjct: 330 ETILASSGTDRRLNV 344

>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 52/126 (41%), Gaps = 7/126 (5%)
Query: 15  EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW 74
           E T      +++A +       S   D    VW +    H +    + +GH D     C 
Sbjct: 136 ELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDL----HNQTLVRQFQGHTDGAS--CI 189
Query: 75  DPKH-ADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELT 133
           D  +    + T   D TVR WD R G+  QQ + + +  ++ Y P G  +AVG     + 
Sbjct: 190 DISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVE 249
Query: 134 ILDVRK 139
           +L V K
Sbjct: 250 VLHVNK 255

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	293
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.98
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.98
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.97
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.97
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.97
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.97
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.97
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.97
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.97
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.97
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.97
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.97
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.97
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.97
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.97
3jro_A	753	Fusion protein of protein transport protein SEC13	99.97
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.96
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.96
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.96
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.95
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.94
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.94
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.94
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.93
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.93
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.93
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.93
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.92
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.92
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.91
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.91
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.91
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.91
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.91
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.9
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.9
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.89
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.89
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.89
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.89
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.89
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.88
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.88
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.88
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.87
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.87
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.86
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.86
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.85
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.85
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.84
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.84
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.84
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.84
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.82
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.8
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.8
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.8
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.79
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.78
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.78
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.78
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.76
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.75
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.75
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.72
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.72
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.71
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.69
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.68
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.66
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.66
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.65
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.64
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.64
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.64
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.64
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.62
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.61
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.61
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.61
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.58
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.58
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.56
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.54
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.54
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.54
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.53
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.53
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.53
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.52
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.52
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.51
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.51
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.48
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.48
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.47
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.46
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.45
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.45
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.44
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.44
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.44
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.42
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.41
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.38
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.35
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.35
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.34
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.26
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.25
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.25
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.23
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.19
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.18
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.18
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.17
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.16
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.11
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.11
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.1
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.09
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.09
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.07
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.07
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.07
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.02
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.02
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.01
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.0
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.93
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.93
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.92
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.9
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.88
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.81
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.78
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.78
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.77
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.75
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.7
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.66
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.52
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.52
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.51
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.5
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.5
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.43
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.41
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.38
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.37
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.33
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.29
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.27
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.25
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.18
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.16
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.16
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	98.13
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.1
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.06
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.04
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.03
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.0
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.94
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.94
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.93
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.92
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.91
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.85
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.83
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.83
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.76
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.74
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.69
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.64
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.61
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.59
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.59
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.58
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.58
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.48
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.38
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.33
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.3
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.3
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.28
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.26
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.19
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.08
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.01
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	96.92
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	96.84
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	96.77
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	96.69
3kya_A	496	Putative phosphatase; structural genomics, joint c	96.54
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	96.49
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	96.45
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.41
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	96.11
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	96.09
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	96.03
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	95.96
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	95.95
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	95.78
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	95.72
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	95.69
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	95.67
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	95.64
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	95.57
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	95.48
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	95.28
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	95.19
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	95.08
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	95.02
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	94.92
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	94.65
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	94.53
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	94.43
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	94.41
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	94.26
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	93.99
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	93.82
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	93.69
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	93.65
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	93.12
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	93.04
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	91.77
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	91.29
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	90.6
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	90.44
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	89.68
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	88.91
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	88.26
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	86.46
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	86.44
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	86.33
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	86.21
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	86.06
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	84.36
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	81.29
3f7f_A	729	Nucleoporin NUP120; nuclear pore complex, macromol	80.96

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=4.2e-43  Score=294.51  Aligned_cols=268  Identities=21%  Similarity=0.302  Sum_probs=226.0

Q ss_pred             cceeecCccccEEEEEECCC----CCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeC
Q 022716           12 HSREYTGHKKKVHSVAWNCT----GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASG   87 (293)
Q Consensus        12 ~~~~~~~h~~~v~~l~~s~~----~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~   87 (293)
                      ..+...+|.+.|.+++|+|+    +.+|+||+.|++|++|++....  ......+.+|...|.++.++++ ..++++++.
T Consensus        24 ~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~--~~~~~~l~gh~~~v~~~~~~~~-~~~l~s~s~  100 (321)
T 3ow8_A           24 LFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDER--LDLQWSLEGHQLGVVSVDISHT-LPIAASSSL  100 (321)
T ss_dssp             EEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTE--EEEEEEECCCSSCEEEEEECSS-SSEEEEEET
T ss_pred             eeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCC--eeeeeeeccCCCCEEEEEECCC-CCEEEEEeC
Confidence            34556799999999999985    5689999999999999986421  2223457899999999999987 468999999


Q ss_pred             CCeEEEEeCCCCeeeeeeee-cCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeec-ccceeeeeEEecCCCEEE
Q 022716           88 DKTVRLWDARSGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFF  165 (293)
Q Consensus        88 d~~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~  165 (293)
                      |+.|++||+.++++...+.. ...+.+++|+|++++|++++.|+.+++||+++........ .+..+..+.|+|++..+.
T Consensus       101 D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la  180 (321)
T 3ow8_A          101 DAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLA  180 (321)
T ss_dssp             TSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEE
T ss_pred             CCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEE
Confidence            99999999999988776654 3456689999999999999999999999998876655443 345678888988877655


Q ss_pred             Eec---------------------CCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCC
Q 022716          166 LTT---------------------GNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTG  224 (293)
Q Consensus       166 ~~~---------------------~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~  224 (293)
                      ..+                     +...+.+++|+|++++|++|+.|++|++||++.+.....+.+|..+|.+++|+|++
T Consensus       181 sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~  260 (321)
T 3ow8_A          181 SGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDD  260 (321)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS
T ss_pred             EEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCC
Confidence            433                     23457789999999999999999999999999999899999999999999999999


Q ss_pred             CEEEEecCCCcEEEEEcCCCCEEEEEe-cCCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEee
Q 022716          225 DYIASASEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGF  290 (293)
Q Consensus       225 ~~l~s~s~d~~i~iw~~~~~~~~~~~~-~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~  290 (293)
                      ++|++|+.|+.|++||+.+++.+..+. +...|.+++|+|++++|++++.|        +.+|||++
T Consensus       261 ~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d--------~~i~vwd~  319 (321)
T 3ow8_A          261 THFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDD--------QEIHIYDC  319 (321)
T ss_dssp             SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT--------CCEEEEEC
T ss_pred             CEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCC--------CeEEEEeC
Confidence            999999999999999999999888774 56789999999999999999988        46777765

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=5.7e-43  Score=303.27  Aligned_cols=265  Identities=22%  Similarity=0.405  Sum_probs=227.8

Q ss_pred             ceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEE
Q 022716           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (293)
Q Consensus        13 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~   92 (293)
                      ...+.+|.++|++++|+|++++|++|+.||+|++||+.....    ...+.+|.+.|.+++|+|+ +.+|++|+.|++|+
T Consensus       101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~----~~~l~~h~~~V~~v~~~~~-~~~l~sgs~D~~i~  175 (410)
T 1vyh_C          101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDF----ERTLKGHTDSVQDISFDHS-GKLLASCSADMTIK  175 (410)
T ss_dssp             SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCC----CEEECCCSSCEEEEEECTT-SSEEEEEETTSCCC
T ss_pred             eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE----EEEEeccCCcEEEEEEcCC-CCEEEEEeCCCeEE
Confidence            456789999999999999999999999999999999975422    2357899999999999987 46899999999999


Q ss_pred             EEeCCCCeeeeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeec-ccceeeeeEEecCCCEEEEec--
Q 022716           93 LWDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTT--  168 (293)
Q Consensus        93 vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~--  168 (293)
                      +||+.++++...+. +...+.+++|+|+++++++++.|++|++||+++........ +...+..+.+++.+..+...+  
T Consensus       176 iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D  255 (410)
T 1vyh_C          176 LWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSND  255 (410)
T ss_dssp             EEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCC
Confidence            99999988877665 34567889999999999999999999999999887665543 445577788887776555433  


Q ss_pred             -------------------CCCCEEEEEECCC--------------------CCEEEEecCCCcEEEEeCCCCEEEEEee
Q 022716          169 -------------------GNAGCYCIAIDPM--------------------GRYFAVGSADSLVSLWDISEMLCVRTFT  209 (293)
Q Consensus       169 -------------------~~~~~~~~~~~~~--------------------~~~l~~gs~d~~i~iwd~~~~~~~~~~~  209 (293)
                                         +...+.+++|+|+                    +.+|++|+.|++|++||++++.++..+.
T Consensus       256 ~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~  335 (410)
T 1vyh_C          256 QTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV  335 (410)
T ss_dssp             SCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             CeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEE
Confidence                               3345788999996                    6789999999999999999999999999


Q ss_pred             ccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEe-cCCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEE
Q 022716          210 KLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIY  288 (293)
Q Consensus       210 ~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~-~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~  288 (293)
                      +|..+|.+++|+|+|++|++|+.|+.|++||..+++.+..+. +...|.+++|+|++++||+|+.|        +.+|||
T Consensus       336 ~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D--------~~i~vW  407 (410)
T 1vyh_C          336 GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVD--------QTVKVW  407 (410)
T ss_dssp             CCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETT--------SEEEEE
T ss_pred             CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCC--------CcEEEE
Confidence            999999999999999999999999999999999988877765 45689999999999999999988        577888


Q ss_pred             ee
Q 022716          289 GF  290 (293)
Q Consensus       289 ~~  290 (293)
                      ++
T Consensus       408 ~~  409 (410)
T 1vyh_C          408 EC  409 (410)
T ss_dssp             C-
T ss_pred             eC
Confidence            65

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=4.9e-44  Score=304.45  Aligned_cols=277  Identities=17%  Similarity=0.185  Sum_probs=210.2

Q ss_pred             cCcccccccceeecCccccEEEEEECCCCCeEEEEeC------CCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCC
Q 022716            4 SSIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSV------DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK   77 (293)
Q Consensus         4 ~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~------dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~   77 (293)
                      +..+.++++......|...|.+++|||||++||+||.      |+.|++|+...............+|...|.+++|+|+
T Consensus        26 ~~~~~w~~p~~~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d  105 (357)
T 4g56_B           26 SKGSAWGRPVTAPACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSE  105 (357)
T ss_dssp             --------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETT
T ss_pred             ccccccCCCCCCcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCC
Confidence            3456666666666789999999999999999999997      7889999876432222222234578899999999996


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCeeeeee-----eecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeec-ccce
Q 022716           78 HADLIATASGDKTVRLWDARSGKCSQQA-----ELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYE  151 (293)
Q Consensus        78 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~-~~~~  151 (293)
                      +  .+++++.|++|++||+.+++.....     .+...+.+++|+|++++|++++.|++|++||+++.+.+.... +...
T Consensus       106 ~--~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~  183 (357)
T 4g56_B          106 K--GILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSE  183 (357)
T ss_dssp             T--EEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred             C--CEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCC
Confidence            3  5678899999999999887654321     234568899999999999999999999999999888776654 4567


Q ss_pred             eeeeEEecCCCEEEEe-cC-----------------------CCCEEEEEECCC-CCEEEEecCCCcEEEEeCCCCEEEE
Q 022716          152 VNEIAWNMTGEMFFLT-TG-----------------------NAGCYCIAIDPM-GRYFAVGSADSLVSLWDISEMLCVR  206 (293)
Q Consensus       152 ~~~v~~~~~~~~~~~~-~~-----------------------~~~~~~~~~~~~-~~~l~~gs~d~~i~iwd~~~~~~~~  206 (293)
                      +..+.|++.++.+++. ..                       ...+.+++|+|+ +.+|++|+.|+.|++||+++++++.
T Consensus       184 v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~  263 (357)
T 4g56_B          184 VNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQ  263 (357)
T ss_dssp             EEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCE
T ss_pred             EEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeE
Confidence            8889998876533222 11                       134789999998 5689999999999999999988888


Q ss_pred             EeeccCCCeeEEEEccCC-CEEEEecCCCcEEEEEcCCCCEEEEEecCCCcceeEECC-CCCeEEEEEcCCCCCCCCcce
Q 022716          207 TFTKLEWPVRTISFSHTG-DYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNP-KYNLLAYAGDDKNKYQADEGV  284 (293)
Q Consensus       207 ~~~~~~~~v~~l~~sp~~-~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp-~~~~la~~~~d~~~~~~~~~~  284 (293)
                      .+.+|..+|.+++|+|++ ++||+|+.|+.|+|||..+++.+..+.+...|++|+||| ++.+||++|.|+        .
T Consensus       264 ~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg--------~  335 (357)
T 4g56_B          264 TSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTTVGWDH--------K  335 (357)
T ss_dssp             EECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECSSSTTEEEEEETTS--------C
T ss_pred             EEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECCCCCCEEEEEEeCCCCCEEEEEcCCC--------e
Confidence            999999999999999987 579999999999999999998888888888999999999 789999999985        5


Q ss_pred             EEEEee
Q 022716          285 FRIYGF  290 (293)
Q Consensus       285 ~~~~~~  290 (293)
                      ++||++
T Consensus       336 v~iW~~  341 (357)
T 4g56_B          336 VLHHHL  341 (357)
T ss_dssp             EEEEEC
T ss_pred             EEEEEC
Confidence            566665

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.8e-42  Score=293.22  Aligned_cols=246  Identities=17%  Similarity=0.219  Sum_probs=204.1

Q ss_pred             CccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCC
Q 022716           18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDAR   97 (293)
Q Consensus        18 ~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~   97 (293)
                      +|...|.+++|+|++ .|++|+.||+|++||++...........+.+|.+.|++++|+|+ +.+|++|+.|++|++||+.
T Consensus        80 ~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spd-g~~l~sgs~d~~i~iwd~~  157 (344)
T 4gqb_B           80 QTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSS-GTQAVSGSKDICIKVWDLA  157 (344)
T ss_dssp             EESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTT-SSEEEEEETTSCEEEEETT
T ss_pred             ccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCC-CCEEEEEeCCCeEEEEECC
Confidence            456789999999985 78899999999999998654433344456799999999999997 4789999999999999999


Q ss_pred             CCeeeeeee-ecCceEEEEEcCCCC-EEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEE
Q 022716           98 SGKCSQQAE-LSGENINITYKPDGT-HIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYC  175 (293)
Q Consensus        98 ~~~~~~~~~-~~~~~~~~~~~~~~~-~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  175 (293)
                      +++++..+. +...+.+++|+|++. .+++++.|++|++||+++.++......                  ..+...+.+
T Consensus       158 ~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~------------------~~~~~~~~~  219 (344)
T 4gqb_B          158 QQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGC------------------SAPGYLPTS  219 (344)
T ss_dssp             TTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----------------------CCCEEE
T ss_pred             CCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeec------------------ceeecccee
Confidence            999888776 456678899999885 678999999999999998776544321                  112334678


Q ss_pred             EEECCC-CCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCC-CEEEEecCCCcEEEEEcCCCCEEEEEecC
Q 022716          176 IAIDPM-GRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTG-DYIASASEDLFIDISNVHTGRTVHQIPCR  253 (293)
Q Consensus       176 ~~~~~~-~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~-~~l~s~s~d~~i~iw~~~~~~~~~~~~~~  253 (293)
                      ++++|+ ++++++|+.|++|++||+++++++.++.+|...|.+++|+|++ ++||+|+.|+.|+|||..+++.+....|.
T Consensus       220 ~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~  299 (344)
T 4gqb_B          220 LAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHR  299 (344)
T ss_dssp             EEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCS
T ss_pred             eeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCC
Confidence            899985 5789999999999999999999999999999999999999998 57999999999999999998877666677


Q ss_pred             CCcceeEECCCCC-eEEEEEcCCCCCCCCcceEEEEeee
Q 022716          254 AAMNSVEWNPKYN-LLAYAGDDKNKYQADEGVFRIYGFE  291 (293)
Q Consensus       254 ~~i~~~~~sp~~~-~la~~~~d~~~~~~~~~~~~~~~~~  291 (293)
                      ..|++++|+|++. +|+++|.|+        ++++|.++
T Consensus       300 ~~V~~v~~sp~~~~llas~s~D~--------~v~~w~v~  330 (344)
T 4gqb_B          300 DFVRDATWSPLNHSLLTTVGWDH--------QVVHHVVP  330 (344)
T ss_dssp             SCEEEEEECSSSTTEEEEEETTS--------CEEEEECC
T ss_pred             CCEEEEEEeCCCCeEEEEEcCCC--------eEEEEECC
Confidence            8999999999986 577899884        67777765

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.9e-41  Score=282.25  Aligned_cols=267  Identities=17%  Similarity=0.196  Sum_probs=222.4

Q ss_pred             cceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (293)
Q Consensus        12 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i   91 (293)
                      ..+.+.+|.+.|.+++|+|++++|++|+.||+|++||+...    .....+..|..+|.++.|+|+ +++|++|+.|+.|
T Consensus         5 ~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~----~~~~~~~~~~~~v~~~~~~~~-~~~l~s~s~d~~i   79 (304)
T 2ynn_A            5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQ----VEVRSIQVTETPVRAGKFIAR-KNWIIVGSDDFRI   79 (304)
T ss_dssp             CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTT----EEEEEEECCSSCEEEEEEEGG-GTEEEEEETTSEE
T ss_pred             eEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC----ceeEEeeccCCcEEEEEEeCC-CCEEEEECCCCEE
Confidence            45678899999999999999999999999999999999743    233457789999999999997 4789999999999


Q ss_pred             EEEeCCCCeeeeeeee-cCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeee-e-cccceeeeeEEecC-CCEEEEe
Q 022716           92 RLWDARSGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR-R-KFGYEVNEIAWNMT-GEMFFLT  167 (293)
Q Consensus        92 ~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~-~-~~~~~~~~v~~~~~-~~~~~~~  167 (293)
                      ++||+.++++...+.. ...+.+++|+|+++++++|+.|++|++||+++...... . .+...+..+.|+|. +..+...
T Consensus        80 ~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sg  159 (304)
T 2ynn_A           80 RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASG  159 (304)
T ss_dssp             EEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEE
T ss_pred             EEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEE
Confidence            9999999988777664 45678899999999999999999999999987643322 2 34567888999984 4443332


Q ss_pred             cC----------------------CCCEEEEEECC--CCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccC
Q 022716          168 TG----------------------NAGCYCIAIDP--MGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHT  223 (293)
Q Consensus       168 ~~----------------------~~~~~~~~~~~--~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~  223 (293)
                      +.                      ...+.++++.|  ++.+|++|+.|++|++||++++.++.++.+|...|.+++|+|+
T Consensus       160 s~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~  239 (304)
T 2ynn_A          160 CLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPT  239 (304)
T ss_dssp             ETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSS
T ss_pred             eCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCC
Confidence            21                      23466777776  6789999999999999999999999999999999999999999


Q ss_pred             CCEEEEecCCCcEEEEEcCCCCEEEEEec-CCCcceeEECCCCC--eEEEEEcCCCCCCCCcceEEEEeeec
Q 022716          224 GDYIASASEDLFIDISNVHTGRTVHQIPC-RAAMNSVEWNPKYN--LLAYAGDDKNKYQADEGVFRIYGFEN  292 (293)
Q Consensus       224 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~-~~~i~~~~~sp~~~--~la~~~~d~~~~~~~~~~~~~~~~~~  292 (293)
                      +++|++|+.|+.|++||..+++.++.+.. ...+.+++|+|++.  ++|+|++|+         +.+|.+++
T Consensus       240 ~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g---------~~~~~~~~  302 (304)
T 2ynn_A          240 LPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG---------FTVLSLGN  302 (304)
T ss_dssp             SSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTE---------EEEEECC-
T ss_pred             CCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCc---------eEEEEecc
Confidence            99999999999999999999998888764 45789999999874  588887664         66666654

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=2.5e-41  Score=286.17  Aligned_cols=276  Identities=23%  Similarity=0.360  Sum_probs=215.1

Q ss_pred             cccccccceeecCccccEEEEEE-----CC-CCCeEEEEeCCCcEEEeecCCCCCC---ceeEEEeeCCcCCeeEEEEcC
Q 022716            6 IPFKNLHSREYTGHKKKVHSVAW-----NC-TGTKLASGSVDQTARVWHIEPHGHG---KVKDIELRGHADSVDQLCWDP   76 (293)
Q Consensus         6 ~~~~~~~~~~~~~h~~~v~~l~~-----s~-~~~~l~s~~~dg~v~iw~~~~~~~~---~~~~~~~~~h~~~i~~~~~~~   76 (293)
                      +++.......+.||.+.|++++|     ++ ++++|+||+.|++|++||+......   ......+.+|...|.+++|+|
T Consensus         7 ~~~~~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~   86 (343)
T 2xzm_R            7 LDIQVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQ   86 (343)
T ss_dssp             EEEEEEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECS
T ss_pred             cceEeeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECC
Confidence            44545566789999999999999     76 8999999999999999999753221   122345789999999999999


Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCCeeeeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeee---ccccee
Q 022716           77 KHADLIATASGDKTVRLWDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRR---KFGYEV  152 (293)
Q Consensus        77 ~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~---~~~~~~  152 (293)
                      + ..+++||+.|++|++||++++++...+. +...+.+++|+|+++++++++.|+++++||++........   .+...+
T Consensus        87 ~-~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v  165 (343)
T 2xzm_R           87 E-NCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWV  165 (343)
T ss_dssp             S-TTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCE
T ss_pred             C-CCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCcee
Confidence            6 4689999999999999999998877665 4567789999999999999999999999999743322221   233446


Q ss_pred             eeeEEecCC----------CEE--------------------EEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCC-
Q 022716          153 NEIAWNMTG----------EMF--------------------FLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISE-  201 (293)
Q Consensus       153 ~~v~~~~~~----------~~~--------------------~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~-  201 (293)
                      ..+.|+|.+          ..+                    .+..+...+.+++|+|++++|++|+.|+.|++||+.. 
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~  245 (343)
T 2xzm_R          166 SCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNL  245 (343)
T ss_dssp             EEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCC
T ss_pred             eeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence            667776654          222                    1234566789999999999999999999999999943 


Q ss_pred             CEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEE--EEe------------cCCCcceeEECCCCCe
Q 022716          202 MLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVH--QIP------------CRAAMNSVEWNPKYNL  267 (293)
Q Consensus       202 ~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~--~~~------------~~~~i~~~~~sp~~~~  267 (293)
                      ......+ .+...|.+++|+|++++++++ .|+.|++|++.+++...  .+.            +...+.+++|+|++++
T Consensus       246 ~~~~~~~-~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~  323 (343)
T 2xzm_R          246 TYPQREF-DAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKK  323 (343)
T ss_dssp             SSCSEEE-ECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCC
T ss_pred             cccceee-cCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCe
Confidence            3223333 345679999999999888755 57789999998765432  332            3346889999999999


Q ss_pred             EEEEEcCCCCCCCCcceEEEEeeec
Q 022716          268 LAYAGDDKNKYQADEGVFRIYGFEN  292 (293)
Q Consensus       268 la~~~~d~~~~~~~~~~~~~~~~~~  292 (293)
                      ||+|+.|        +++|+|+++.
T Consensus       324 l~sg~~D--------g~v~~w~~~~  340 (343)
T 2xzm_R          324 LFAGFTD--------GVIRTFSFET  340 (343)
T ss_dssp             EEEEETT--------SEEEEEEEEE
T ss_pred             EEEecCC--------ceEEEEEEEc
Confidence            9999988        5889998874

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.4e-40  Score=278.90  Aligned_cols=241  Identities=22%  Similarity=0.288  Sum_probs=205.4

Q ss_pred             cceeecCccccEEEEEECCCC-CeEEEEeCCCcEEEeecCCCCCC-ceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCC
Q 022716           12 HSREYTGHKKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHG-KVKDIELRGHADSVDQLCWDPKHADLIATASGDK   89 (293)
Q Consensus        12 ~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~v~iw~~~~~~~~-~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~   89 (293)
                      ....+.||.+.|.+++|+|++ ++|+||+.|++|++|++...... ......+.+|...|.+++|+|+ +.+|++|+.|+
T Consensus         9 l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~d-g~~l~s~s~D~   87 (319)
T 3frx_A            9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTAD-GAYALSASWDK   87 (319)
T ss_dssp             EEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTT-SSEEEEEETTS
T ss_pred             EEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCC-CCEEEEEeCCC
Confidence            345788999999999999965 79999999999999998642211 1223457899999999999997 46899999999


Q ss_pred             eEEEEeCCCCeeeeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEec
Q 022716           90 TVRLWDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTT  168 (293)
Q Consensus        90 ~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  168 (293)
                      +|++||+.++++...+. +...+.+++|+|++..+++++.|+++++||++......                     +..
T Consensus        88 ~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~---------------------~~~  146 (319)
T 3frx_A           88 TLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLAT---------------------LLG  146 (319)
T ss_dssp             EEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEE---------------------ECC
T ss_pred             EEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEE---------------------Eec
Confidence            99999999998877765 45667889999999999999999999999987532211                     223


Q ss_pred             CCCCEEEEEECCC------CCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcC
Q 022716          169 GNAGCYCIAIDPM------GRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVH  242 (293)
Q Consensus       169 ~~~~~~~~~~~~~------~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~  242 (293)
                      +...+.++.+.|.      +..+++++.|+.|++||++++.....+.+|..+|.+++|+|+|++|++|+.|+.|++||+.
T Consensus       147 h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~  226 (319)
T 3frx_A          147 HNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLA  226 (319)
T ss_dssp             CSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETT
T ss_pred             cCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence            4455667777764      5589999999999999999999888999999999999999999999999999999999999


Q ss_pred             CCCEEEEEecCCCcceeEECCCCCeEEEEEcC
Q 022716          243 TGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDD  274 (293)
Q Consensus       243 ~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~d  274 (293)
                      +++.+..+....+|.+++|+|++.+|++++.+
T Consensus       227 ~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~  258 (319)
T 3frx_A          227 AKKAMYTLSAQDEVFSLAFSPNRYWLAAATAT  258 (319)
T ss_dssp             TTEEEEEEECCSCEEEEEECSSSSEEEEEETT
T ss_pred             CCcEEEEecCCCcEEEEEEcCCCCEEEEEcCC
Confidence            99988888888899999999999999998765

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=4.6e-40  Score=278.13  Aligned_cols=260  Identities=16%  Similarity=0.225  Sum_probs=215.8

Q ss_pred             cceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (293)
Q Consensus        12 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i   91 (293)
                      ..+.+.+|.+.|.+++|+|++++|++|+.||+|++||+....    ....+..|...|.+++|+|+ +.+|++|+.|+.+
T Consensus        47 ~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~----~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~d~~v  121 (340)
T 1got_B           47 TRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTN----KVHAIPLRSSWVMTCAYAPS-GNYVACGGLDNIC  121 (340)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCC----EEEEEECSSSCEEEEEECTT-SSEEEEEETTCEE
T ss_pred             hheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCC----cceEeecCCccEEEEEECCC-CCEEEEEeCCCeE
Confidence            346788999999999999999999999999999999987432    23456789999999999997 4689999999999


Q ss_pred             EEEeCCCCe----eeeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeec-ccceeeeeEEecCCCEEE
Q 022716           92 RLWDARSGK----CSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFF  165 (293)
Q Consensus        92 ~vwd~~~~~----~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~  165 (293)
                      ++||+.+..    ....+. +.+.+.++.|.+++. +++++.|+++++||+++........ +...+..+.|+|.+..+.
T Consensus       122 ~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~  200 (340)
T 1got_B          122 SIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFV  200 (340)
T ss_dssp             EEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred             EEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEE
Confidence            999997653    222232 345567788988764 8999999999999999887766554 456788899988877655


Q ss_pred             Eec---------------------CCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeec--cCCCeeEEEEcc
Q 022716          166 LTT---------------------GNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK--LEWPVRTISFSH  222 (293)
Q Consensus       166 ~~~---------------------~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~--~~~~v~~l~~sp  222 (293)
                      ..+                     +...+.+++|+|++++|++|+.|++|++||++.+..+..+..  +...|.+++|+|
T Consensus       201 sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~  280 (340)
T 1got_B          201 SGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK  280 (340)
T ss_dssp             EEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECT
T ss_pred             EEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECC
Confidence            332                     345688999999999999999999999999999887766643  234799999999


Q ss_pred             CCCEEEEecCCCcEEEEEcCCCCEEEEEe-cCCCcceeEECCCCCeEEEEEcCCCC
Q 022716          223 TGDYIASASEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNK  277 (293)
Q Consensus       223 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~-~~~~i~~~~~sp~~~~la~~~~d~~~  277 (293)
                      +|++|++|+.|+.|++||..+++.+..+. +..+|.+++|+|++.+||+|+.|+.+
T Consensus       281 ~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i  336 (340)
T 1got_B          281 SGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFL  336 (340)
T ss_dssp             TSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCE
T ss_pred             CCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccE
Confidence            99999999999999999999998887765 56789999999999999999998533

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1.5e-40  Score=275.98  Aligned_cols=245  Identities=21%  Similarity=0.343  Sum_probs=192.6

Q ss_pred             eecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCC-CCCEEEEEeCCCeEEE
Q 022716           15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK-HADLIATASGDKTVRL   93 (293)
Q Consensus        15 ~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~-~~~~l~s~~~d~~i~v   93 (293)
                      .+.+|.+.|.+++|+|+|++||+|+.|++|++|++.....  .....+.+|.+.|.+++|+|. .+.+|+||+.|++|++
T Consensus         4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~--~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~i   81 (297)
T 2pm7_B            4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH--KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMI   81 (297)
T ss_dssp             ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB--CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEE
T ss_pred             eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc--EEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEE
Confidence            4679999999999999999999999999999999964211  122467899999999999763 3578999999999999


Q ss_pred             EeCCCCee--eeeee-ecCceEEEEEcCC--CCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEec
Q 022716           94 WDARSGKC--SQQAE-LSGENINITYKPD--GTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTT  168 (293)
Q Consensus        94 wd~~~~~~--~~~~~-~~~~~~~~~~~~~--~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  168 (293)
                      ||+.+++.  ...+. +...+.+++|+|+  +..|++++.|+++++||++.......                  ..+..
T Consensus        82 Wd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~------------------~~~~~  143 (297)
T 2pm7_B           82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSP------------------IIIDA  143 (297)
T ss_dssp             EEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCC------------------EEEEC
T ss_pred             EEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceee------------------eeeec
Confidence            99987743  22232 3456788999997  88999999999999999976432110                  11223


Q ss_pred             CCCCEEEEEECCC-------------CCEEEEecCCCcEEEEeCCCCE----EEEEeeccCCCeeEEEEccCC---CEEE
Q 022716          169 GNAGCYCIAIDPM-------------GRYFAVGSADSLVSLWDISEML----CVRTFTKLEWPVRTISFSHTG---DYIA  228 (293)
Q Consensus       169 ~~~~~~~~~~~~~-------------~~~l~~gs~d~~i~iwd~~~~~----~~~~~~~~~~~v~~l~~sp~~---~~l~  228 (293)
                      +...+.+++|+|+             +++|++|+.|++|++||++++.    ....+.+|..+|.+++|+|++   ++||
T Consensus       144 h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~la  223 (297)
T 2pm7_B          144 HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMA  223 (297)
T ss_dssp             CSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEE
T ss_pred             ccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEE
Confidence            3445556666664             5799999999999999987653    566788999999999999995   8999


Q ss_pred             EecCCCcEEEEEcCCCC---EEEEE---ecCCCcceeEECCCCCeEEEEEcCCCCCC
Q 022716          229 SASEDLFIDISNVHTGR---TVHQI---PCRAAMNSVEWNPKYNLLAYAGDDKNKYQ  279 (293)
Q Consensus       229 s~s~d~~i~iw~~~~~~---~~~~~---~~~~~i~~~~~sp~~~~la~~~~d~~~~~  279 (293)
                      +|+.|+.|++||+.++.   ....+   .+...|.+++|+|++++||+++.|+.+++
T Consensus       224 s~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~l  280 (297)
T 2pm7_B          224 SVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTL  280 (297)
T ss_dssp             EEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEE
T ss_pred             EEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEE
Confidence            99999999999998743   12222   23567899999999999999998854333

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=7.9e-41  Score=287.02  Aligned_cols=253  Identities=18%  Similarity=0.289  Sum_probs=203.5

Q ss_pred             ccceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCce---------------------------------
Q 022716           11 LHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKV---------------------------------   57 (293)
Q Consensus        11 ~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~---------------------------------   57 (293)
                      ...+.+.||.+.|.+++|+|++++|+||+.||+|++||+........                                 
T Consensus        57 ~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~  136 (380)
T 3iz6_a           57 VCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFN  136 (380)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEE
T ss_pred             EEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEE
Confidence            34577899999999999999999999999999999999754210000                                 


Q ss_pred             ------------eEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeee------ecCceEEEEEcC-
Q 022716           58 ------------KDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAE------LSGENINITYKP-  118 (293)
Q Consensus        58 ------------~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~------~~~~~~~~~~~~-  118 (293)
                                  ....+.+|...|.++.|.|.+...|++|+.|++|++||+.++++...+.      +...+.++.+.| 
T Consensus       137 ~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  216 (380)
T 3iz6_a          137 LSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSL  216 (380)
T ss_dssp             CCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSS
T ss_pred             CCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecC
Confidence                        0011346777777777777656678899999999999999887765542      234567888876 


Q ss_pred             CCCEEEEEeCCCeEEEEEcccc-ceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEE
Q 022716          119 DGTHIAVGNRDDELTILDVRKF-KPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLW  197 (293)
Q Consensus       119 ~~~~l~~~~~d~~i~l~d~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iw  197 (293)
                      ++..+++|+.|+++++||++.. .+..                    .+..+...+.+++|+|++++|++|+.|++|++|
T Consensus       217 ~~~~l~sgs~D~~v~~wd~~~~~~~~~--------------------~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lw  276 (380)
T 3iz6_a          217 NANMFISGSCDTTVRLWDLRITSRAVR--------------------TYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLF  276 (380)
T ss_dssp             SCCEEEEEETTSCEEEEETTTTCCCCE--------------------EECCCSSCCCEEEECTTSSEEEEECSSSCEEEE
T ss_pred             CCCEEEEEECCCeEEEEECCCCCcceE--------------------EECCcCCCeEEEEEecCCCeEEEEcCCCeEEEE
Confidence            8899999999999999999743 2221                    123456678899999999999999999999999


Q ss_pred             eCCCCEEEEEeeccC-------CCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEE-----ecCCCcceeEECCCC
Q 022716          198 DISEMLCVRTFTKLE-------WPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQI-----PCRAAMNSVEWNPKY  265 (293)
Q Consensus       198 d~~~~~~~~~~~~~~-------~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~-----~~~~~i~~~~~sp~~  265 (293)
                      |++++.++..+..+.       ..|.+++|+|+|++|++|+.|+.|++||..+++.+..+     .+...|++++|+|++
T Consensus       277 d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg  356 (380)
T 3iz6_a          277 DMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDG  356 (380)
T ss_dssp             ETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSS
T ss_pred             ECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCC
Confidence            999998887775543       24899999999999999999999999999998887766     356689999999999


Q ss_pred             CeEEEEEcCCCCCCCCcceEEEEeee
Q 022716          266 NLLAYAGDDKNKYQADEGVFRIYGFE  291 (293)
Q Consensus       266 ~~la~~~~d~~~~~~~~~~~~~~~~~  291 (293)
                      ++||+||.|        +++|||+++
T Consensus       357 ~~l~sgs~D--------~~i~iW~~~  374 (380)
T 3iz6_a          357 SALCTGSWD--------KNLKIWAFS  374 (380)
T ss_dssp             SEEEEECTT--------SCEEEEECC
T ss_pred             CEEEEeeCC--------CCEEEEecC
Confidence            999999988        467788775

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=2.9e-39  Score=274.70  Aligned_cols=266  Identities=18%  Similarity=0.254  Sum_probs=216.9

Q ss_pred             ccceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCe
Q 022716           11 LHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKT   90 (293)
Q Consensus        11 ~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~   90 (293)
                      ...+.+.||.+.|.+++|+|++++|+||+.||+|++||.....    ....+..|...|.+++|+|++ ..|++++.|+.
T Consensus        55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~----~~~~~~~~~~~v~~~~~sp~g-~~lasg~~d~~  129 (354)
T 2pbi_B           55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTN----KEHAVTMPCTWVMACAYAPSG-CAIACGGLDNK  129 (354)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC----EEEEEECSSSCCCEEEECTTS-SEEEEESTTSE
T ss_pred             EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCC----cceEEecCCCCEEEEEECCCC-CEEEEeeCCCC
Confidence            4557789999999999999999999999999999999986432    223466788899999999974 68999999999


Q ss_pred             EEEEeCCCCe------eeeee-eecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeec-ccceeeeeEEecC--
Q 022716           91 VRLWDARSGK------CSQQA-ELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMT--  160 (293)
Q Consensus        91 i~vwd~~~~~------~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~-~~~~~~~v~~~~~--  160 (293)
                      +++|++....      ....+ .+...+.+++|+|++..+++++.|+++++||+++.+.+.... +...+..+.|.+.  
T Consensus       130 i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~  209 (354)
T 2pbi_B          130 CSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSET  209 (354)
T ss_dssp             EEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSS
T ss_pred             EEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCC
Confidence            9999986431      11222 244567789999999999999999999999999887766543 4556666666653  


Q ss_pred             CCEEEE---------------------ecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeecc--CCCeeE
Q 022716          161 GEMFFL---------------------TTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL--EWPVRT  217 (293)
Q Consensus       161 ~~~~~~---------------------~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~--~~~v~~  217 (293)
                      +..+..                     ..+...+.+++|+|++.+|++|+.|++|++||++....+..+..+  ...+.+
T Consensus       210 g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~  289 (354)
T 2pbi_B          210 GNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASS  289 (354)
T ss_dssp             CCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEE
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeE
Confidence            333332                     223456889999999999999999999999999998777666543  357899


Q ss_pred             EEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEe-cCCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEe
Q 022716          218 ISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYG  289 (293)
Q Consensus       218 l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~-~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~  289 (293)
                      ++|+|++++|++|+.|+.|++||+.+++.+..+. +..+|.+++|+|++++||+|+.|+        ++|||+
T Consensus       290 ~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~--------~v~vW~  354 (354)
T 2pbi_B          290 VDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDH--------TLRVWA  354 (354)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTS--------EEEEEC
T ss_pred             EEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCC--------CEEecC
Confidence            9999999999999999999999999998887764 567899999999999999999884        677774

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=3.9e-39  Score=268.92  Aligned_cols=269  Identities=25%  Similarity=0.420  Sum_probs=225.0

Q ss_pred             cceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (293)
Q Consensus        12 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i   91 (293)
                      ....+.+|.+.|++++|+|++++|++|+.||.|++|++....    ....+.+|...|.+++|+|+ +.+|++++.|+.|
T Consensus        15 ~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~----~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~d~~i   89 (312)
T 4ery_A           15 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK----FEKTISGHKLGISDVAWSSD-SNLLVSASDDKTL   89 (312)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC----EEEEECCCSSCEEEEEECTT-SSEEEEEETTSEE
T ss_pred             eEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc----cchhhccCCCceEEEEEcCC-CCEEEEECCCCEE
Confidence            445678999999999999999999999999999999986432    23356789999999999997 4789999999999


Q ss_pred             EEEeCCCCeeeeeeee-cCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeec-ccceeeeeEEecCCCEEEEecC
Q 022716           92 RLWDARSGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTG  169 (293)
Q Consensus        92 ~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~  169 (293)
                      ++||++++++...+.. ...+.+++|+|+++++++++.|+.+++||+++.+...... +...+..+.|++.+..+...+.
T Consensus        90 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  169 (312)
T 4ery_A           90 KIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY  169 (312)
T ss_dssp             EEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             EEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeC
Confidence            9999999988777664 4567789999999999999999999999999877665554 4557888999988776554432


Q ss_pred             C----------------------CCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCee---EEEEccCC
Q 022716          170 N----------------------AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVR---TISFSHTG  224 (293)
Q Consensus       170 ~----------------------~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~---~l~~sp~~  224 (293)
                      +                      ..+.+++++|++++|++++.|+.|++||+++++.+..+.+|.....   .....+++
T Consensus       170 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (312)
T 4ery_A          170 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGG  249 (312)
T ss_dssp             TSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSS
T ss_pred             CCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCC
Confidence            2                      3467899999999999999999999999999999988888765432   23334678


Q ss_pred             CEEEEecCCCcEEEEEcCCCCEEEEEe-cCCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeee
Q 022716          225 DYIASASEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE  291 (293)
Q Consensus       225 ~~l~s~s~d~~i~iw~~~~~~~~~~~~-~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~  291 (293)
                      .+|++|+.|+.|++||+.+++.+..+. +...|.+++|+|+++++++++.+.      ++++|||+.|
T Consensus       250 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~------d~~i~~W~~d  311 (312)
T 4ery_A          250 KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALEN------DKTIKLWKSD  311 (312)
T ss_dssp             CEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTT------TCCEEEEECC
T ss_pred             cEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccC------CccEEEecCC
Confidence            999999999999999999999888775 566799999999999999998532      3678999875

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.2e-39  Score=276.06  Aligned_cols=269  Identities=24%  Similarity=0.398  Sum_probs=208.5

Q ss_pred             cceeecCccc-cEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCe
Q 022716           12 HSREYTGHKK-KVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKT   90 (293)
Q Consensus        12 ~~~~~~~h~~-~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~   90 (293)
                      ..+.+.+|.. .|.+++|+|+|++||+|+.|++|++||+..... ........+|...|.+++|+|+ +.+|++|+.|+.
T Consensus         7 ~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~-~~~~~~~~~h~~~v~~~~~sp~-g~~l~s~s~D~~   84 (345)
T 3fm0_A            7 LLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSW-ICKSVLSEGHQRTVRKVAWSPC-GNYLASASFDAT   84 (345)
T ss_dssp             EEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEE-EEEEEECSSCSSCEEEEEECTT-SSEEEEEETTSC
T ss_pred             EeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcc-eeeeeeccccCCcEEEEEECCC-CCEEEEEECCCc
Confidence            4567789987 999999999999999999999999999864311 1112224689999999999997 478999999999


Q ss_pred             EEEEeCCCCe--eeeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEcccccee---ee-ecccceeeeeEEecCCCE
Q 022716           91 VRLWDARSGK--CSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPI---HR-RKFGYEVNEIAWNMTGEM  163 (293)
Q Consensus        91 i~vwd~~~~~--~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~---~~-~~~~~~~~~v~~~~~~~~  163 (293)
                      +++||+..+.  +...+. +...+.+++|+|++++|++++.|+++++||++.....   .. ..+...+..+.|+|.+..
T Consensus        85 v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~  164 (345)
T 3fm0_A           85 TCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQEL  164 (345)
T ss_dssp             EEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSC
T ss_pred             EEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCE
Confidence            9999988764  334443 3456789999999999999999999999999765432   22 224556888899887765


Q ss_pred             EEEe-----------------------cCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCC---------------CEEE
Q 022716          164 FFLT-----------------------TGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISE---------------MLCV  205 (293)
Q Consensus       164 ~~~~-----------------------~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~---------------~~~~  205 (293)
                      +...                       .+...+.+++|+|++++|++|+.|++|++||...               ..++
T Consensus       165 l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~  244 (345)
T 3fm0_A          165 LASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCI  244 (345)
T ss_dssp             EEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEE
T ss_pred             EEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCcccee
Confidence            4432                       2345688999999999999999999999999621               1334


Q ss_pred             EEeec-cCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCC----E----EEEE--ecCCCcceeEECCCC-CeEEEEEc
Q 022716          206 RTFTK-LEWPVRTISFSHTGDYIASASEDLFIDISNVHTGR----T----VHQI--PCRAAMNSVEWNPKY-NLLAYAGD  273 (293)
Q Consensus       206 ~~~~~-~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~----~----~~~~--~~~~~i~~~~~sp~~-~~la~~~~  273 (293)
                      ..+.+ |...|.+++|+|++..|++++.|+.|++|+...+.    .    ....  .+...|++|+|+|++ .+||+||.
T Consensus       245 ~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~  324 (345)
T 3fm0_A          245 CTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSD  324 (345)
T ss_dssp             EEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEET
T ss_pred             EEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCC
Confidence            45555 77899999999999999999999999999987542    1    1111  345689999999998 59999999


Q ss_pred             CCCCCCCCc
Q 022716          274 DKNKYQADE  282 (293)
Q Consensus       274 d~~~~~~~~  282 (293)
                      |+.+++|+.
T Consensus       325 Dg~v~~W~~  333 (345)
T 3fm0_A          325 DGEVAFWKY  333 (345)
T ss_dssp             TSCEEEEEE
T ss_pred             CCcEEEEEe
Confidence            864444433

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=6.4e-40  Score=297.80  Aligned_cols=261  Identities=22%  Similarity=0.363  Sum_probs=209.6

Q ss_pred             ceeecCccccEEEEEECCCCC-eEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716           13 SREYTGHKKKVHSVAWNCTGT-KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (293)
Q Consensus        13 ~~~~~~h~~~v~~l~~s~~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i   91 (293)
                      ...+.+|...|.+++|+|++. .|++|+.|++|++||..+.    .....+.+|...|.+++|+|+ +.+|+|++.|++|
T Consensus       140 ~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~----~~~~~l~~H~~~V~~v~fspd-g~~las~s~D~~i  214 (611)
T 1nr0_A          140 NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPF----KFKSTFGEHTKFVHSVRYNPD-GSLFASTGGDGTI  214 (611)
T ss_dssp             CBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTB----EEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCE
T ss_pred             cceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCC----eEeeeeccccCceEEEEECCC-CCEEEEEECCCcE
Confidence            456789999999999999997 5999999999999997632    233467899999999999997 4689999999999


Q ss_pred             EEEeCCCCeeeeee--------eecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeee-----------------
Q 022716           92 RLWDARSGKCSQQA--------ELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRR-----------------  146 (293)
Q Consensus        92 ~vwd~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~-----------------  146 (293)
                      ++||+.++++...+        .+.+.+.+++|+|++++|++++.|+++++||+++.+.....                 
T Consensus       215 ~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (611)
T 1nr0_A          215 VLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTK  294 (611)
T ss_dssp             EEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECS
T ss_pred             EEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcC
Confidence            99999988876655        24567889999999999999999999999999876543221                 


Q ss_pred             ---------------------------cccceeeeeEEecCCCEEEEecC------------------------------
Q 022716          147 ---------------------------KFGYEVNEIAWNMTGEMFFLTTG------------------------------  169 (293)
Q Consensus       147 ---------------------------~~~~~~~~v~~~~~~~~~~~~~~------------------------------  169 (293)
                                                 .+...+..+.|+|++..++..+.                              
T Consensus       295 ~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~  374 (611)
T 1nr0_A          295 QALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIK  374 (611)
T ss_dssp             SCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEE
T ss_pred             CEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEE
Confidence                                       12334666777776654332211                              


Q ss_pred             -------------------------------------------------------------------------CCCEEEE
Q 022716          170 -------------------------------------------------------------------------NAGCYCI  176 (293)
Q Consensus       170 -------------------------------------------------------------------------~~~~~~~  176 (293)
                                                                                               ...+.++
T Consensus       375 ~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~v  454 (611)
T 1nr0_A          375 TTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCV  454 (611)
T ss_dssp             ECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEE
T ss_pred             ECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEE
Confidence                                                                                     1124678


Q ss_pred             EECCCCCEEEEecCCCcEEEEeCCCCEE--EEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCC-CCEEEE--Ee
Q 022716          177 AIDPMGRYFAVGSADSLVSLWDISEMLC--VRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHT-GRTVHQ--IP  251 (293)
Q Consensus       177 ~~~~~~~~l~~gs~d~~i~iwd~~~~~~--~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~-~~~~~~--~~  251 (293)
                      +|+|++++||+|+.|++|++||+.....  ... .+|...|.+++|+|+|++|++++.|+.|++|+..+ ++.+..  +.
T Consensus       455 a~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~  533 (611)
T 1nr0_A          455 ALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWT  533 (611)
T ss_dssp             EECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCC
T ss_pred             EEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeee
Confidence            9999999999999999999999987643  333 67899999999999999999999999999999987 444332  23


Q ss_pred             -cCCCcceeEECCCCCeEEEEEcCCCCCC
Q 022716          252 -CRAAMNSVEWNPKYNLLAYAGDDKNKYQ  279 (293)
Q Consensus       252 -~~~~i~~~~~sp~~~~la~~~~d~~~~~  279 (293)
                       +...|++++|+|++++||+|+.|+.+++
T Consensus       534 ~H~~~V~~v~fspdg~~lasgs~D~~v~l  562 (611)
T 1nr0_A          534 FHTAKVACVSWSPDNVRLATGSLDNSVIV  562 (611)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             ecccceeEEEECCCCCEEEEEECCCcEEE
Confidence             6678999999999999999999864333

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=8.4e-39  Score=275.59  Aligned_cols=246  Identities=26%  Similarity=0.418  Sum_probs=207.0

Q ss_pred             ccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCe
Q 022716           21 KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGK  100 (293)
Q Consensus        21 ~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~  100 (293)
                      ..|.+++|+|+|++|++|+.||+|++||+...    .....+.+|...|.+++|+|++ ..|++++.|+.|++||+++++
T Consensus       124 ~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~----~~~~~~~~h~~~v~~~~~~p~~-~~l~s~s~d~~v~iwd~~~~~  198 (393)
T 1erj_A          124 LYIRSVCFSPDGKFLATGAEDRLIRIWDIENR----KIVMILQGHEQDIYSLDYFPSG-DKLVSGSGDRTVRIWDLRTGQ  198 (393)
T ss_dssp             CBEEEEEECTTSSEEEEEETTSCEEEEETTTT----EEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTE
T ss_pred             eeEEEEEECCCCCEEEEEcCCCeEEEEECCCC----cEEEEEccCCCCEEEEEEcCCC-CEEEEecCCCcEEEEECCCCe
Confidence            35999999999999999999999999999742    2334578999999999999974 689999999999999999999


Q ss_pred             eeeeeeecCceEEEEEcC-CCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEEC
Q 022716          101 CSQQAELSGENINITYKP-DGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAID  179 (293)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  179 (293)
                      +...+.....+.+++++| +++++++++.|+.+++||+++..........             ......+...+.+++|+
T Consensus       199 ~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~-------------~~~~~~h~~~v~~v~~~  265 (393)
T 1erj_A          199 CSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSE-------------NESGTGHKDSVYSVVFT  265 (393)
T ss_dssp             EEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC-------------------CCCSSCEEEEEEC
T ss_pred             eEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeeccc-------------ccCCCCCCCCEEEEEEC
Confidence            888777788888999999 8999999999999999999876654432110             01123456778999999


Q ss_pred             CCCCEEEEecCCCcEEEEeCCCC------------EEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEE
Q 022716          180 PMGRYFAVGSADSLVSLWDISEM------------LCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTV  247 (293)
Q Consensus       180 ~~~~~l~~gs~d~~i~iwd~~~~------------~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~  247 (293)
                      |++++|++|+.|++|++||+++.            .+...+.+|...|.+++|+|++++|++|+.|+.|++||..+++.+
T Consensus       266 ~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~  345 (393)
T 1erj_A          266 RDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPL  345 (393)
T ss_dssp             TTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEE
T ss_pred             CCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEE
Confidence            99999999999999999998753            344567789999999999999999999999999999999999988


Q ss_pred             EEEe-cCCCcceeEECC------CCCeEEEEEcCCCCCCCCcceEEEEeeec
Q 022716          248 HQIP-CRAAMNSVEWNP------KYNLLAYAGDDKNKYQADEGVFRIYGFEN  292 (293)
Q Consensus       248 ~~~~-~~~~i~~~~~sp------~~~~la~~~~d~~~~~~~~~~~~~~~~~~  292 (293)
                      ..+. +...|.+++|+|      ++++||+|+.|        +++|||++++
T Consensus       346 ~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~D--------g~i~iW~~~~  389 (393)
T 1erj_A          346 LMLQGHRNSVISVAVANGSSLGPEYNVFATGSGD--------CKARIWKYKK  389 (393)
T ss_dssp             EEEECCSSCEEEEEECSSCTTCTTCEEEEEEETT--------SEEEEEEEEE
T ss_pred             EEECCCCCCEEEEEecCCcCcCCCCCEEEEECCC--------CcEEECcccc
Confidence            7775 566899999876      68899999988        5888998875

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.2e-38  Score=267.15  Aligned_cols=245  Identities=20%  Similarity=0.313  Sum_probs=202.7

Q ss_pred             ceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEE
Q 022716           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (293)
Q Consensus        13 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~   92 (293)
                      .+.+.+|...|.+++|+|+|++|++|+.|++|++||+...    .....+.+|...|.+++|+|+ ..+|++|+.|+.|+
T Consensus        58 ~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~----~~~~~~~~h~~~v~~~~~~~~-~~~l~s~s~D~~i~  132 (319)
T 3frx_A           58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATG----ETYQRFVGHKSDVMSVDIDKK-ASMIISGSRDKTIK  132 (319)
T ss_dssp             EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT----EEEEEEECCSSCEEEEEECTT-SCEEEEEETTSCEE
T ss_pred             ceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCC----CeeEEEccCCCcEEEEEEcCC-CCEEEEEeCCCeEE
Confidence            4678899999999999999999999999999999999753    233457899999999999996 46899999999999


Q ss_pred             EEeCCCCeeeeeeeecCceEEEEEcCC------CCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEE
Q 022716           93 LWDARSGKCSQQAELSGENINITYKPD------GTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFL  166 (293)
Q Consensus        93 vwd~~~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  166 (293)
                      +||++.........+...+.++++.|.      +..+++++.|+++++||+++.+....                    +
T Consensus       133 vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~--------------------~  192 (319)
T 3frx_A          133 VWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD--------------------F  192 (319)
T ss_dssp             EEETTSCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEE--------------------E
T ss_pred             EEECCCCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhhee--------------------e
Confidence            999975433333334556778888884      45899999999999999987553322                    2


Q ss_pred             ecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCE
Q 022716          167 TTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRT  246 (293)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~  246 (293)
                      ..+...+.+++++|++++|++|+.|++|++||+.+++.+..+..+ .+|.+++|+|++.+|++++.++ +++|++..+..
T Consensus       193 ~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~sp~~~~la~~~~~~-i~v~~~~~~~~  270 (319)
T 3frx_A          193 IGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSPNRYWLAAATATG-IKVFSLDPQYL  270 (319)
T ss_dssp             CCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC-SCEEEEEECSSSSEEEEEETTE-EEEEEETTEEE
T ss_pred             cCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC-CcEEEEEEcCCCCEEEEEcCCC-cEEEEeCcCee
Confidence            345677899999999999999999999999999999988888654 6899999999999999887655 99999988766


Q ss_pred             EEEEe---------cCCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeeec
Q 022716          247 VHQIP---------CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN  292 (293)
Q Consensus       247 ~~~~~---------~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~~  292 (293)
                      +..+.         +...+.+++|+|+|++|++|+.|        +.+|||++..
T Consensus       271 ~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~D--------g~i~vWd~~t  317 (319)
T 3frx_A          271 VDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTD--------NVIRVWQVMT  317 (319)
T ss_dssp             EEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETT--------SCEEEEEEEE
T ss_pred             eeccCccccccccCcCcceeEEEECCCCCEEEEeecC--------ceEEEEEEee
Confidence            65543         23457899999999999999988        5788888764

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.7e-39  Score=269.54  Aligned_cols=268  Identities=21%  Similarity=0.341  Sum_probs=201.6

Q ss_pred             cceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEe-eC-CcCCeeEEEEcCCCCCEEEEEeCCC
Q 022716           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIEL-RG-HADSVDQLCWDPKHADLIATASGDK   89 (293)
Q Consensus        12 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~-~~-h~~~i~~~~~~~~~~~~l~s~~~d~   89 (293)
                      ..+.+.+|.++|.+++|+|+  +|++|+.|++|++|++..... . ....+ .+ |...|.+++|+|+ +.+|++|+.|+
T Consensus         6 ~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~-~-~~~~~~~~~h~~~v~~v~~sp~-~~~las~s~D~   80 (330)
T 2hes_X            6 LIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDF-T-LIDVLDETAHKKAIRSVAWRPH-TSLLAAGSFDS   80 (330)
T ss_dssp             EEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCC-E-EEEEECTTCCCSCEEEEEECTT-SSEEEEEETTS
T ss_pred             cceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCe-E-EEEEEecCCccCCEEEEEECCC-CCEEEEEeCCC
Confidence            45678899999999999987  999999999999999974321 1 11223 34 9999999999997 47899999999


Q ss_pred             eEEEEeCCCC-------eeeeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEcccc----ceeeee-cccceeeeeE
Q 022716           90 TVRLWDARSG-------KCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKF----KPIHRR-KFGYEVNEIA  156 (293)
Q Consensus        90 ~i~vwd~~~~-------~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~----~~~~~~-~~~~~~~~v~  156 (293)
                      .|++||+...       ++...+. +...+.+++|+|++++|++++.|+++++||++..    +..... .+...+..+.
T Consensus        81 ~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~  160 (330)
T 2hes_X           81 TVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVI  160 (330)
T ss_dssp             CEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEE
T ss_pred             cEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEE
Confidence            9999998532       2333333 3456788999999999999999999999999532    222222 3556788899


Q ss_pred             EecCCCEEEEec-----------------------CCCCEEEEEECCC--CCEEEEecCCCcEEEEeCCCC--------E
Q 022716          157 WNMTGEMFFLTT-----------------------GNAGCYCIAIDPM--GRYFAVGSADSLVSLWDISEM--------L  203 (293)
Q Consensus       157 ~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~--~~~l~~gs~d~~i~iwd~~~~--------~  203 (293)
                      |+|.+..+...+                       +...+.+++|+|+  +..|++|+.|++|++||++..        .
T Consensus       161 ~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~  240 (330)
T 2hes_X          161 WHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWV  240 (330)
T ss_dssp             ECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEE
T ss_pred             ECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeE
Confidence            988776544322                       3456788999998  678999999999999998643        3


Q ss_pred             EEEEeec-cCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCC--EEEEE--ecCC-CcceeEECC--CCCeEEEEEcCC
Q 022716          204 CVRTFTK-LEWPVRTISFSHTGDYIASASEDLFIDISNVHTGR--TVHQI--PCRA-AMNSVEWNP--KYNLLAYAGDDK  275 (293)
Q Consensus       204 ~~~~~~~-~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~--~~~~~--~~~~-~i~~~~~sp--~~~~la~~~~d~  275 (293)
                      +...+.. |..+|.+++|+|++ +|++++.|+.|++|+..+++  .+...  .+.. .|++++|+|  ++++||+|+.| 
T Consensus       241 ~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~D-  318 (330)
T 2hes_X          241 CEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDD-  318 (330)
T ss_dssp             EEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETT-
T ss_pred             EeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCC-
Confidence            4455554 88899999999765 89999999999999998774  23232  2334 799999999  68999999988 


Q ss_pred             CCCCCCcceEEEEeeecC
Q 022716          276 NKYQADEGVFRIYGFENA  293 (293)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~  293 (293)
                             +++|||+++.|
T Consensus       319 -------g~v~~W~~~~~  329 (330)
T 2hes_X          319 -------GIVNFWSLEKA  329 (330)
T ss_dssp             -------SEEEEEEC---
T ss_pred             -------CcEEEEEeccC
Confidence                   68899998864

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=3.4e-40  Score=276.18  Aligned_cols=261  Identities=22%  Similarity=0.317  Sum_probs=190.4

Q ss_pred             eecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCC-CCCEEEEEeCCCeEEE
Q 022716           15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK-HADLIATASGDKTVRL   93 (293)
Q Consensus        15 ~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~-~~~~l~s~~~d~~i~v   93 (293)
                      .+.+|.+.|++++|+|+|++||+|+.|++|++||+....  ......+.+|...|.+++|+|. ++.+|+||+.|++|++
T Consensus         8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~--~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~i   85 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGG--QILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVII   85 (316)
T ss_dssp             ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTE--EEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEE
T ss_pred             ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCC--cEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEE
Confidence            467999999999999999999999999999999986421  1223467899999999999753 3578999999999999


Q ss_pred             EeCCCCe--eeeeee-ecCceEEEEEcCC--CCEEEEEeCCCeEEEEEcccccee---ee-ecccceeeeeEEecCCCEE
Q 022716           94 WDARSGK--CSQQAE-LSGENINITYKPD--GTHIAVGNRDDELTILDVRKFKPI---HR-RKFGYEVNEIAWNMTGEMF  164 (293)
Q Consensus        94 wd~~~~~--~~~~~~-~~~~~~~~~~~~~--~~~l~~~~~d~~i~l~d~~~~~~~---~~-~~~~~~~~~v~~~~~~~~~  164 (293)
                      ||++++.  ....+. +...+.+++|+|+  +.+|++++.|+++++||++.....   .. ..+...+..+.|+|....-
T Consensus        86 Wd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  165 (316)
T 3bg1_A           86 WREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPG  165 (316)
T ss_dssp             ECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC-
T ss_pred             EECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCc
Confidence            9998874  233332 3456789999998  789999999999999999865321   11 1123345666666543210


Q ss_pred             EEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCC---EEEEEeeccCCCeeEEEEccCC----CEEEEecCCCcEE
Q 022716          165 FLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM---LCVRTFTKLEWPVRTISFSHTG----DYIASASEDLFID  237 (293)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~---~~~~~~~~~~~~v~~l~~sp~~----~~l~s~s~d~~i~  237 (293)
                      .+......    ...+.+++|++|+.|++|++||++..   .++..+.+|..+|.+++|+|++    ++||+|+.|+.|+
T Consensus       166 ~~~~~~~~----~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~  241 (316)
T 3bg1_A          166 SLIDHPSG----QKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVF  241 (316)
T ss_dssp             -----CCS----CCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEE
T ss_pred             cccccccc----cCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEE
Confidence            00000000    00112578999999999999999754   5677888999999999999987    8999999999999


Q ss_pred             EEEcCCC---C-EEEE-EecCCCcceeEECCCCCeEEEEEcCCCCCCCC
Q 022716          238 ISNVHTG---R-TVHQ-IPCRAAMNSVEWNPKYNLLAYAGDDKNKYQAD  281 (293)
Q Consensus       238 iw~~~~~---~-~~~~-~~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~  281 (293)
                      +|++.+.   . .... ..+...|.+++|+|++++||+++.|+.+++|+
T Consensus       242 iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~  290 (316)
T 3bg1_A          242 IWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWK  290 (316)
T ss_dssp             EEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEE
T ss_pred             EEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEE
Confidence            9998763   1 1111 23467899999999999999999986555443

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=1.1e-37  Score=262.40  Aligned_cols=269  Identities=18%  Similarity=0.269  Sum_probs=211.2

Q ss_pred             ceeecCccccEEEEEECCC-CCeEEEEeCCCcEEEeecCCCCCC-ceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCe
Q 022716           13 SREYTGHKKKVHSVAWNCT-GTKLASGSVDQTARVWHIEPHGHG-KVKDIELRGHADSVDQLCWDPKHADLIATASGDKT   90 (293)
Q Consensus        13 ~~~~~~h~~~v~~l~~s~~-~~~l~s~~~dg~v~iw~~~~~~~~-~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~   90 (293)
                      ..++.||.+.|++|+|+|+ +++|+|||.||+|++||+...... ......+.+|...|.++.|+|+ +.+|++++.|+.
T Consensus        31 ~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~d-g~~l~s~~~d~~  109 (340)
T 4aow_A           31 RGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSD-GQFALSGSWDGT  109 (340)
T ss_dssp             EEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTT-SSEEEEEETTSE
T ss_pred             EEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCC-CCEEEEEccccc
Confidence            3468899999999999998 589999999999999999754322 2233457899999999999997 478999999999


Q ss_pred             EEEEeCCCCeeeeeeee-cCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeee--cccceeeeeEEecCCC-----
Q 022716           91 VRLWDARSGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRR--KFGYEVNEIAWNMTGE-----  162 (293)
Q Consensus        91 i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~--~~~~~~~~v~~~~~~~-----  162 (293)
                      |++|+............ ......+.+.+++..+++++.|+.+++||++........  .+...+..+.|.+.+.     
T Consensus       110 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  189 (340)
T 4aow_A          110 LRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIV  189 (340)
T ss_dssp             EEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEE
T ss_pred             ceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEE
Confidence            99999988876655443 345566788999999999999999999998765432221  1223344444443321     


Q ss_pred             ----------------E--EEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCC
Q 022716          163 ----------------M--FFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTG  224 (293)
Q Consensus       163 ----------------~--~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~  224 (293)
                                      .  ..+..+...+.+++|+|++++|++|+.|+.|++||+++..++..+..+ ..+.+++|+|++
T Consensus       190 s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~  268 (340)
T 4aow_A          190 SCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG-DIINALCFSPNR  268 (340)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS-SCEEEEEECSSS
T ss_pred             EEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC-ceEEeeecCCCC
Confidence                            1  112334567899999999999999999999999999999988877654 589999999987


Q ss_pred             CEEEEecCCCcEEEEEcCCCCEEEEEe----------cCCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeeec
Q 022716          225 DYIASASEDLFIDISNVHTGRTVHQIP----------CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN  292 (293)
Q Consensus       225 ~~l~s~s~d~~i~iw~~~~~~~~~~~~----------~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~~  292 (293)
                      .++ +++.|+.|++||+.++..+..+.          +...|++++|+|++++||+|+.|        +.+|||+++.
T Consensus       269 ~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D--------g~v~iW~~~t  337 (340)
T 4aow_A          269 YWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTD--------NLVRVWQVTI  337 (340)
T ss_dssp             SEE-EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETT--------SCEEEEEEEC
T ss_pred             cee-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCC--------CEEEEEeCCC
Confidence            655 56679999999998877665442          34578999999999999999988        5788888763

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-37  Score=263.85  Aligned_cols=267  Identities=19%  Similarity=0.303  Sum_probs=225.4

Q ss_pred             cceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (293)
Q Consensus        12 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i   91 (293)
                      ....+.+|.+.|++++|+|++++|++|+.||.|++||+....    ....+.+|...|.+++|+|+ +.+|++++.|+.|
T Consensus        24 ~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~----~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~dg~i   98 (369)
T 3zwl_B           24 KAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGE----RLGTLDGHTGTIWSIDVDCF-TKYCVTGSADYSI   98 (369)
T ss_dssp             EEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCC----EEEEECCCSSCEEEEEECTT-SSEEEEEETTTEE
T ss_pred             ccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCch----hhhhhhhcCCcEEEEEEcCC-CCEEEEEeCCCeE
Confidence            345688999999999999999999999999999999987531    23457789999999999996 5789999999999


Q ss_pred             EEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCC-----CeEEEEEccccceeeee------------cccc--ee
Q 022716           92 RLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRD-----DELTILDVRKFKPIHRR------------KFGY--EV  152 (293)
Q Consensus        92 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----~~i~l~d~~~~~~~~~~------------~~~~--~~  152 (293)
                      ++||+.++++...+.....+.+++|+|+++.+++++.+     +.+.+||++........            ....  .+
T Consensus        99 ~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (369)
T 3zwl_B           99 KLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAA  178 (369)
T ss_dssp             EEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCE
T ss_pred             EEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccce
Confidence            99999999988888888888999999999999999998     99999998765422111            1111  56


Q ss_pred             eeeEEecCCCEEEEec----------------------CCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeec
Q 022716          153 NEIAWNMTGEMFFLTT----------------------GNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK  210 (293)
Q Consensus       153 ~~v~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~  210 (293)
                      ..+.|++.+..++...                      +...+.+++|+|++++|++++.|+.|++||++++..+..+. 
T Consensus       179 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-  257 (369)
T 3zwl_B          179 TVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-  257 (369)
T ss_dssp             EEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-
T ss_pred             eEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-
Confidence            6677777665544332                      34568899999999999999999999999999998887776 


Q ss_pred             cCCCeeEEEEccCCCEEEEecCCC--------------cEEEEEcCCCCEEEEEe-cCCCcceeEECCCCCeEEEEEcCC
Q 022716          211 LEWPVRTISFSHTGDYIASASEDL--------------FIDISNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDK  275 (293)
Q Consensus       211 ~~~~v~~l~~sp~~~~l~s~s~d~--------------~i~iw~~~~~~~~~~~~-~~~~i~~~~~sp~~~~la~~~~d~  275 (293)
                      +..++..++|+|+++++++++.++              .+++||..+++.+..+. +...|++++|+|++++|++++.| 
T Consensus       258 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-  336 (369)
T 3zwl_B          258 TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGED-  336 (369)
T ss_dssp             CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETT-
T ss_pred             CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCC-
Confidence            778999999999999999999888              89999999999887775 56789999999999999999987 


Q ss_pred             CCCCCCcceEEEEeeec
Q 022716          276 NKYQADEGVFRIYGFEN  292 (293)
Q Consensus       276 ~~~~~~~~~~~~~~~~~  292 (293)
                             +.++||++++
T Consensus       337 -------g~v~iw~~~~  346 (369)
T 3zwl_B          337 -------GFIRLHHFEK  346 (369)
T ss_dssp             -------SEEEEEEECH
T ss_pred             -------CeEEEEECcc
Confidence                   5788888864

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=2.7e-38  Score=265.90  Aligned_cols=263  Identities=21%  Similarity=0.292  Sum_probs=209.7

Q ss_pred             eeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCC-CCCEEEEEeCCCeEE
Q 022716           14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK-HADLIATASGDKTVR   92 (293)
Q Consensus        14 ~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~-~~~~l~s~~~d~~i~   92 (293)
                      +.+.+|.+.|++++|+|++++|++|+.||.|++||+............+.+|...|.+++|+|. ++.+|++++.|+.|+
T Consensus         5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~   84 (351)
T 3f3f_A            5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK   84 (351)
T ss_dssp             CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred             ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence            4467999999999999999999999999999999997543322334457799999999999985 357999999999999


Q ss_pred             EEeCCCC---------eeeeeee-ecCceEEEEEcCC--CCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecC
Q 022716           93 LWDARSG---------KCSQQAE-LSGENINITYKPD--GTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMT  160 (293)
Q Consensus        93 vwd~~~~---------~~~~~~~-~~~~~~~~~~~~~--~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~  160 (293)
                      +||++++         +....+. ....+.+++|+|+  +.++++++.|+.+++||+++...............+.+.+ 
T Consensus        85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-  163 (351)
T 3f3f_A           85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPP-  163 (351)
T ss_dssp             EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCC-
T ss_pred             EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccccccc-
Confidence            9999876         3333333 4566788999999  9999999999999999998877655443333332222221 


Q ss_pred             CCEEEEecCCCCEEEEEECCC---CCEEEEecCCCcEEEEeCCCCEE--EEEeeccCCCeeEEEEccCC----CEEEEec
Q 022716          161 GEMFFLTTGNAGCYCIAIDPM---GRYFAVGSADSLVSLWDISEMLC--VRTFTKLEWPVRTISFSHTG----DYIASAS  231 (293)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~---~~~l~~gs~d~~i~iwd~~~~~~--~~~~~~~~~~v~~l~~sp~~----~~l~s~s  231 (293)
                            ..+...+.+++++|+   +..+++++.|+.+.+|+...+..  +..+.+|..+|.+++|+|++    ++|++|+
T Consensus       164 ------~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~  237 (351)
T 3f3f_A          164 ------ANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGC  237 (351)
T ss_dssp             ------SSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEE
T ss_pred             ------CCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEc
Confidence                  124456789999997   89999999999998888776654  66778899999999999998    8999999


Q ss_pred             CCCcEEEEEcCCC----------------------------------------------CEEEEEe-cCCCcceeEECCC
Q 022716          232 EDLFIDISNVHTG----------------------------------------------RTVHQIP-CRAAMNSVEWNPK  264 (293)
Q Consensus       232 ~d~~i~iw~~~~~----------------------------------------------~~~~~~~-~~~~i~~~~~sp~  264 (293)
                      .|+.|++||+..+                                              +.+..+. +..+|++++|+|+
T Consensus       238 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~  317 (351)
T 3f3f_A          238 KDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLT  317 (351)
T ss_dssp             TTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSS
T ss_pred             CCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCC
Confidence            9999999999875                                              2333343 4568999999999


Q ss_pred             CCeEEEEEcCCCCCCCCcceEEEEeee
Q 022716          265 YNLLAYAGDDKNKYQADEGVFRIYGFE  291 (293)
Q Consensus       265 ~~~la~~~~d~~~~~~~~~~~~~~~~~  291 (293)
                      +++|++++.|+        .++||+++
T Consensus       318 ~~~l~s~~~dg--------~v~iw~~~  336 (351)
T 3f3f_A          318 GTILSSAGDDG--------KVRLWKAT  336 (351)
T ss_dssp             SCCEEEEETTS--------CEEEEEEC
T ss_pred             CCEEEEecCCC--------cEEEEecC
Confidence            99999999885        55666654

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=2.8e-38  Score=287.00  Aligned_cols=245  Identities=22%  Similarity=0.280  Sum_probs=200.5

Q ss_pred             cceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCC---
Q 022716           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD---   88 (293)
Q Consensus        12 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d---   88 (293)
                      ..+.+.+|...|++++|+|+|++||+|+.||+|+|||+....  ......+.+|...|.+++|+|++ ..|++++.+   
T Consensus        51 ~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~--~~~~~~~~~~~~~v~~v~fs~dg-~~l~~~~~~~~~  127 (611)
T 1nr0_A           51 DTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTT--HILKTTIPVFSGPVKDISWDSES-KRIAAVGEGRER  127 (611)
T ss_dssp             CCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTT--CCEEEEEECSSSCEEEEEECTTS-CEEEEEECCSSC
T ss_pred             cCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCc--ceeeEeecccCCceEEEEECCCC-CEEEEEECCCCc
Confidence            456788999999999999999999999999999999986432  22334578999999999999975 577777765   


Q ss_pred             -CeEEEEeCCCCeeeeeee-ecCceEEEEEcCCCC-EEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEE
Q 022716           89 -KTVRLWDARSGKCSQQAE-LSGENINITYKPDGT-HIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFF  165 (293)
Q Consensus        89 -~~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~-~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  165 (293)
                       +.|++||.  +.+...+. +...+.+++|+|++. .|++++.|+++++||.++.+....                    
T Consensus       128 ~~~v~~wd~--~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~--------------------  185 (611)
T 1nr0_A          128 FGHVFLFDT--GTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKST--------------------  185 (611)
T ss_dssp             SEEEEETTT--CCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEE--------------------
T ss_pred             eeEEEEeeC--CCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeee--------------------
Confidence             47888874  44444333 345678899999987 599999999999999876543321                    


Q ss_pred             EecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEee-------ccCCCeeEEEEccCCCEEEEecCCCcEEE
Q 022716          166 LTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT-------KLEWPVRTISFSHTGDYIASASEDLFIDI  238 (293)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~-------~~~~~v~~l~~sp~~~~l~s~s~d~~i~i  238 (293)
                      +..+...+.+++|+|++++|++|+.|++|++||+.+++++..+.       +|..+|.+++|+|+|++|++++.|++|++
T Consensus       186 l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~l  265 (611)
T 1nr0_A          186 FGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKI  265 (611)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             eccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEE
Confidence            23466778999999999999999999999999999998888774       79999999999999999999999999999


Q ss_pred             EEcCCCCEEEEE--------------------------------------------ecCCCcceeEECCCCCeEEEEEcC
Q 022716          239 SNVHTGRTVHQI--------------------------------------------PCRAAMNSVEWNPKYNLLAYAGDD  274 (293)
Q Consensus       239 w~~~~~~~~~~~--------------------------------------------~~~~~i~~~~~sp~~~~la~~~~d  274 (293)
                      ||+.+++.+..+                                            .+...|++++|+|++++|++++.|
T Consensus       266 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D  345 (611)
T 1nr0_A          266 WNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAE  345 (611)
T ss_dssp             EETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCC
Confidence            999987655433                                            244578999999999999999998


Q ss_pred             CCCCCCC
Q 022716          275 KNKYQAD  281 (293)
Q Consensus       275 ~~~~~~~  281 (293)
                      +.+++|+
T Consensus       346 ~~v~~Wd  352 (611)
T 1nr0_A          346 GHINSWD  352 (611)
T ss_dssp             SCEEEEE
T ss_pred             CcEEEEE
Confidence            6555443

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=9.4e-38  Score=281.23  Aligned_cols=256  Identities=27%  Similarity=0.397  Sum_probs=213.7

Q ss_pred             cceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (293)
Q Consensus        12 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i   91 (293)
                      ..+.+.+|...|.+++|+|++++|++++.||+|++|++...     ....+.+|...|.+++|+|++ ..|++++.|+.+
T Consensus       295 ~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~-----~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~dg~v  368 (577)
T 2ymu_A          295 LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ-----HLQTLTGHSSSVWGVAFSPDG-QTIASASDDKTV  368 (577)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC-----EEEEECCCSSCEEEEEECTTS-SEEEEEETTSEE
T ss_pred             EEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC-----eeEEEeCCCCCEEEEEECCCC-CEEEEEeCCCEE
Confidence            34567899999999999999999999999999999998632     223567899999999999974 689999999999


Q ss_pred             EEEeCCCCeeeeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEec--
Q 022716           92 RLWDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTT--  168 (293)
Q Consensus        92 ~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--  168 (293)
                      ++||.. ++....+. +...+.+++|+|++++|++++.|+.+++||...........+...+..+.|+|++..+...+  
T Consensus       369 ~~~~~~-~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d  447 (577)
T 2ymu_A          369 KLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDD  447 (577)
T ss_dssp             EEEETT-CCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEEcCC-CCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEecCCCCCeEEEEECCCCCEEEEEcCC
Confidence            999964 45555444 45667889999999999999999999999965433333334566788888888776554332  


Q ss_pred             ------------------CCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEe
Q 022716          169 ------------------GNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASA  230 (293)
Q Consensus       169 ------------------~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~  230 (293)
                                        +...+.+++|+|++++|++++.|++|++||. +++++..+.+|..+|++++|+|+|++||++
T Consensus       448 ~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~  526 (577)
T 2ymu_A          448 KTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASA  526 (577)
T ss_dssp             SEEEEEETTSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEE
T ss_pred             CEEEEEECCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEE
Confidence                              3456789999999999999999999999995 667788899999999999999999999999


Q ss_pred             cCCCcEEEEEcCCCCEEEEEe-cCCCcceeEECCCCCeEEEEEcCCC
Q 022716          231 SEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKN  276 (293)
Q Consensus       231 s~d~~i~iw~~~~~~~~~~~~-~~~~i~~~~~sp~~~~la~~~~d~~  276 (293)
                      +.|+.|++||. +++.+..+. +..+|.+++|+|++++|+++|.|+.
T Consensus       527 ~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~  572 (577)
T 2ymu_A          527 SDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKT  572 (577)
T ss_dssp             ETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSC
T ss_pred             ECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCE
Confidence            99999999995 677777665 5678999999999999999999853

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=9.8e-38  Score=267.60  Aligned_cols=267  Identities=14%  Similarity=0.162  Sum_probs=210.5

Q ss_pred             ceeecCccccEEEEEECCCC-CeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716           13 SREYTGHKKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (293)
Q Consensus        13 ~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i   91 (293)
                      .+.+.+|...|.+++|+|++ ++|++|+.||.|++||+....  ........+|...|.+++|+|.++.+|++++.|+.|
T Consensus        66 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i  143 (383)
T 3ei3_B           66 HRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQN--KTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGAT  143 (383)
T ss_dssp             EEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTT--CEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEE
T ss_pred             EEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcc--cceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEE
Confidence            45678999999999999999 999999999999999997532  222333457999999999999656789999999999


Q ss_pred             EEEeCCCCeeeeeeeec---CceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCC-EEEEe
Q 022716           92 RLWDARSGKCSQQAELS---GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGE-MFFLT  167 (293)
Q Consensus        92 ~vwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~  167 (293)
                      ++||+............   ..+.+++|+|+++++++++.|+.+++||++.........+...+..+.|++.++ .+...
T Consensus       144 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~  223 (383)
T 3ei3_B          144 TLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGHEIFKEKLHKAKVTHAEFNPRCDWLMATS  223 (383)
T ss_dssp             EEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSCEEEEEECSSSCEEEEEECSSCTTEEEEE
T ss_pred             EEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEeccCCCcEEEEEECCCCCCEEEEE
Confidence            99999864433222222   457889999999999999999999999996433333334567788899998887 44432


Q ss_pred             c------------------------CCCCEEEEEECC-CCCEEEEecCCCcEEEEeCCCCEEEEEeeccC----------
Q 022716          168 T------------------------GNAGCYCIAIDP-MGRYFAVGSADSLVSLWDISEMLCVRTFTKLE----------  212 (293)
Q Consensus       168 ~------------------------~~~~~~~~~~~~-~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~----------  212 (293)
                      +                        +...+.+++|+| ++++|++++.|+.|++||++++..+..+..|.          
T Consensus       224 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  303 (383)
T 3ei3_B          224 SVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPI  303 (383)
T ss_dssp             ETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCC
T ss_pred             eCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccce
Confidence            2                        234578999999 99999999999999999998776555554332          


Q ss_pred             -------CCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEec---CCCcceeEECCCCCeEEEEEcCCCCCCCCc
Q 022716          213 -------WPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPC---RAAMNSVEWNPKYNLLAYAGDDKNKYQADE  282 (293)
Q Consensus       213 -------~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~---~~~i~~~~~sp~~~~la~~~~d~~~~~~~~  282 (293)
                             ..+..++|+|++++  +|+.|+.|++||+.+++.+..+..   ...+..++|+|++.+||+|+ |        
T Consensus       304 ~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d--------  372 (383)
T 3ei3_B          304 KATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-G--------  372 (383)
T ss_dssp             CCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-T--------
T ss_pred             EEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-C--------
Confidence                   34455777777777  888999999999999999888763   34566779999999999997 5        


Q ss_pred             ceEEEEeeec
Q 022716          283 GVFRIYGFEN  292 (293)
Q Consensus       283 ~~~~~~~~~~  292 (293)
                      +.++||++++
T Consensus       373 ~~i~iw~~~~  382 (383)
T 3ei3_B          373 FNILIWNRED  382 (383)
T ss_dssp             TEEEEEECC-
T ss_pred             CcEEEEecCC
Confidence            5789999875

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=1.1e-36  Score=255.60  Aligned_cols=264  Identities=14%  Similarity=0.211  Sum_probs=221.4

Q ss_pred             ecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCC-ceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEE
Q 022716           16 YTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHG-KVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLW   94 (293)
Q Consensus        16 ~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~-~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vw   94 (293)
                      ..+|...|.+++|+|++++|++++ ||.|++|++...... ........+|...|.+++|+|+ +.+|++++.|+.|++|
T Consensus        47 ~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~~  124 (337)
T 1gxr_A           47 TLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPD-GCTLIVGGEASTLSIW  124 (337)
T ss_dssp             EECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTT-SSEEEEEESSSEEEEE
T ss_pred             eccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCC-CCEEEEEcCCCcEEEE
Confidence            458999999999999999999999 999999999754322 2222333478999999999996 4689999999999999


Q ss_pred             eCCCCee--eeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeec-ccceeeeeEEecCCCEEEEecCC
Q 022716           95 DARSGKC--SQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTGN  170 (293)
Q Consensus        95 d~~~~~~--~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~  170 (293)
                      |+.+++.  ...+. ....+.+++|+|+++++++++.|+.+++||+++.+...... +...+..+.|++.+..+.....+
T Consensus       125 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  204 (337)
T 1gxr_A          125 DLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLD  204 (337)
T ss_dssp             ECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             ECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecC
Confidence            9988763  33333 33457789999999999999999999999999887766654 46678899999988766654432


Q ss_pred             --------------------CCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEe
Q 022716          171 --------------------AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASA  230 (293)
Q Consensus       171 --------------------~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~  230 (293)
                                          ..+.+++++|+++++++++.|+.|++||+++.+.. .+..|..+|.+++|+|++++|+++
T Consensus       205 g~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~  283 (337)
T 1gxr_A          205 NTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVST  283 (337)
T ss_dssp             SEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEEE
T ss_pred             CcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEcCCccceeEEEECCCCCEEEEe
Confidence                                45778999999999999999999999999987654 567889999999999999999999


Q ss_pred             cCCCcEEEEEcCCCCEEEEEecCCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEee
Q 022716          231 SEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGF  290 (293)
Q Consensus       231 s~d~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~  290 (293)
                      +.|+.|++|++.+++.+....+..++.+++|+|++++|++++.|        +.++||++
T Consensus       284 ~~dg~i~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--------g~i~iw~~  335 (337)
T 1gxr_A          284 GKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGD--------KKATVYEV  335 (337)
T ss_dssp             ETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETT--------SCEEEEEE
T ss_pred             cCCCcEEEEECCCCeEEEEecCCCcEEEEEECCCCCEEEEecCC--------CeEEEEEE
Confidence            99999999999999988777888899999999999999999987        46778776

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=2.9e-38  Score=275.72  Aligned_cols=268  Identities=17%  Similarity=0.199  Sum_probs=207.2

Q ss_pred             eeecCccccEEEEEECC-CCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEE
Q 022716           14 REYTGHKKKVHSVAWNC-TGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (293)
Q Consensus        14 ~~~~~h~~~v~~l~~s~-~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~   92 (293)
                      +...+|...|+||+|+| +++.||+|+.||.|+|||+....  ......+.+|.+.|++++|+|.++.+|+||+.|++|+
T Consensus       113 ~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~--~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~  190 (435)
T 4e54_B          113 QKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKD--KPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTR  190 (435)
T ss_dssp             CEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCS--CCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEE
T ss_pred             ccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCC--ceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEE
Confidence            34567889999999999 46789999999999999997543  2233456789999999999997778999999999999


Q ss_pred             EEeCCCCeeeeeeeec---CceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEec-
Q 022716           93 LWDARSGKCSQQAELS---GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTT-  168 (293)
Q Consensus        93 vwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-  168 (293)
                      +||++.+........+   ..+.+++|+|++++|++|+.|+.|++||++.........+...+..+.|+|.++.+++.+ 
T Consensus       191 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s  270 (435)
T 4e54_B          191 LQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATAS  270 (435)
T ss_dssp             EEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEE
T ss_pred             EeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcceeEEEecccceEEeeeecCCCceEEEEec
Confidence            9999876544333322   234578999999999999999999999998654443344567789999998876544322 


Q ss_pred             ------------------------CCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCC------CeeEE
Q 022716          169 ------------------------GNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEW------PVRTI  218 (293)
Q Consensus       169 ------------------------~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~------~v~~l  218 (293)
                                              +...+.+++|+|++++|++|+.||+|++||+.++.....+..|..      .+...
T Consensus       271 ~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (435)
T 4e54_B          271 VDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKA  350 (435)
T ss_dssp             TTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBC
T ss_pred             CcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEE
Confidence                                    124578999999999999999999999999998877766655432      23345


Q ss_pred             EEccCCCEEEEec------------CCCcEEEEEcCCCCEEEEEe--cCCCccee-EECCCCCeEEEEEcCCCCCCCCcc
Q 022716          219 SFSHTGDYIASAS------------EDLFIDISNVHTGRTVHQIP--CRAAMNSV-EWNPKYNLLAYAGDDKNKYQADEG  283 (293)
Q Consensus       219 ~~sp~~~~l~s~s------------~d~~i~iw~~~~~~~~~~~~--~~~~i~~~-~~sp~~~~la~~~~d~~~~~~~~~  283 (293)
                      .|+|++.++++++            .++.|++||..+++.+..+.  +...|.++ +|||+|.+||+|+ |        +
T Consensus       351 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d--------~  421 (435)
T 4e54_B          351 AWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-G--------Y  421 (435)
T ss_dssp             EECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-S--------S
T ss_pred             EEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-C--------C
Confidence            5677766666553            34679999999999887763  45678887 6999999999886 4        3


Q ss_pred             eEEEEeeec
Q 022716          284 VFRIYGFEN  292 (293)
Q Consensus       284 ~~~~~~~~~  292 (293)
                      .+|||+++.
T Consensus       422 ~i~iW~~~~  430 (435)
T 4e54_B          422 HILIWSQQE  430 (435)
T ss_dssp             EEEECCCC-
T ss_pred             cEEEEECCc
Confidence            577887764

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=1.8e-37  Score=266.74  Aligned_cols=269  Identities=14%  Similarity=0.112  Sum_probs=221.2

Q ss_pred             ceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCC--ceeEEEeeCCcCCeeEEEEcCC---CC---CEEEE
Q 022716           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHG--KVKDIELRGHADSVDQLCWDPK---HA---DLIAT   84 (293)
Q Consensus        13 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~--~~~~~~~~~h~~~i~~~~~~~~---~~---~~l~s   84 (293)
                      .+.+.+|.+.|++++|+|  ++|++|+.||.|++|++......  ......+.+|...|.+++|+|+   ++   .+|++
T Consensus         9 ~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s   86 (397)
T 1sq9_A            9 ANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVAT   86 (397)
T ss_dssp             EEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEE
T ss_pred             hhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEE
Confidence            456779999999999998  79999999999999999754310  1123456799999999999986   24   58999


Q ss_pred             EeCCCeEEEEeCCCCee-----eeeeeec------CceEEEEEc----CCCCE-EEEEeCCCeEEEEEccc------cce
Q 022716           85 ASGDKTVRLWDARSGKC-----SQQAELS------GENINITYK----PDGTH-IAVGNRDDELTILDVRK------FKP  142 (293)
Q Consensus        85 ~~~d~~i~vwd~~~~~~-----~~~~~~~------~~~~~~~~~----~~~~~-l~~~~~d~~i~l~d~~~------~~~  142 (293)
                      ++.|+.|++||+.+++.     ...+..+      ..+.+++|+    |+++. |++++.|+.+++||++.      ...
T Consensus        87 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  166 (397)
T 1sq9_A           87 TSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLT  166 (397)
T ss_dssp             EETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTT
T ss_pred             EcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccce
Confidence            99999999999987765     5554433      778899999    99999 99999999999999987      544


Q ss_pred             ee-----eec--------ccceeeeeEEecCCCEEEEe---------------------c---C---CCCEEEEEECCCC
Q 022716          143 IH-----RRK--------FGYEVNEIAWNMTGEMFFLT---------------------T---G---NAGCYCIAIDPMG  182 (293)
Q Consensus       143 ~~-----~~~--------~~~~~~~v~~~~~~~~~~~~---------------------~---~---~~~~~~~~~~~~~  182 (293)
                      +.     ...        ....+..+.|++.+ .+...                     .   +   ...+.+++|+|++
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~  245 (397)
T 1sq9_A          167 LNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQG  245 (397)
T ss_dssp             TCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSST
T ss_pred             eeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCC
Confidence            43     321        35567888888876 43322                     2   3   5568899999999


Q ss_pred             CEEEEecCC---CcEEEEeCCCCEEEEEeec-------------cCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCE
Q 022716          183 RYFAVGSAD---SLVSLWDISEMLCVRTFTK-------------LEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRT  246 (293)
Q Consensus       183 ~~l~~gs~d---~~i~iwd~~~~~~~~~~~~-------------~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~  246 (293)
                      ++|++++.|   +.|++||+++++.+..+..             |..+|.+++|+|++++|++++.|+.|++||+.+++.
T Consensus       246 ~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  325 (397)
T 1sq9_A          246 SLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKER  325 (397)
T ss_dssp             TEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE
T ss_pred             CEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCce
Confidence            999999999   9999999999998989988             999999999999999999999999999999999988


Q ss_pred             EEEEe------c----------------CCCcceeEECCCC----------CeEEEEEcCCCCCCCCcceEEEEeeec
Q 022716          247 VHQIP------C----------------RAAMNSVEWNPKY----------NLLAYAGDDKNKYQADEGVFRIYGFEN  292 (293)
Q Consensus       247 ~~~~~------~----------------~~~i~~~~~sp~~----------~~la~~~~d~~~~~~~~~~~~~~~~~~  292 (293)
                      +..+.      .                ..+|++++|+|++          ++|++++.|        +.++||+++.
T Consensus       326 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~d--------g~i~iw~~~~  395 (397)
T 1sq9_A          326 ITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLD--------RSIRWFREAG  395 (397)
T ss_dssp             EEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETT--------TEEEEEEEEC
T ss_pred             eEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCC--------CcEEEEEcCC
Confidence            88776      3                5789999999998          799999987        5788998864

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=3.1e-38  Score=269.43  Aligned_cols=260  Identities=14%  Similarity=0.157  Sum_probs=204.9

Q ss_pred             ccEEEEEECCCCCeEEEEeCCC-------cEEEeecCCCCCCc------eeEEEeeCCcCCeeEEEEcCCCCCEEEEE--
Q 022716           21 KKVHSVAWNCTGTKLASGSVDQ-------TARVWHIEPHGHGK------VKDIELRGHADSVDQLCWDPKHADLIATA--   85 (293)
Q Consensus        21 ~~v~~l~~s~~~~~l~s~~~dg-------~v~iw~~~~~~~~~------~~~~~~~~h~~~i~~~~~~~~~~~~l~s~--   85 (293)
                      .||++++|+|||++|++||.|.       .|++|+++......      .....+.+|...+.++++.+   +.+++|  
T Consensus        15 ~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~---~~~~~g~~   91 (365)
T 4h5i_A           15 YPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASK---GIILVGCN   91 (365)
T ss_dssp             SCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEET---TEEEEECC
T ss_pred             CCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCC---CEEEEEEC
Confidence            5899999999999999997643       59999997543221      12345778888899888754   355554  


Q ss_pred             ---------eCCCeEEEEeCCCCeee-e---eeee------cCceEEEEEcCCCCEEEEEe--CCCeEEEEEccccceee
Q 022716           86 ---------SGDKTVRLWDARSGKCS-Q---QAEL------SGENINITYKPDGTHIAVGN--RDDELTILDVRKFKPIH  144 (293)
Q Consensus        86 ---------~~d~~i~vwd~~~~~~~-~---~~~~------~~~~~~~~~~~~~~~l~~~~--~d~~i~l~d~~~~~~~~  144 (293)
                               +.|+.+++|++...... .   ....      ...+..++|+|||+++++++  .|++|++||+++.++..
T Consensus        92 ~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~  171 (365)
T 4h5i_A           92 ENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKF  171 (365)
T ss_dssp             CCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEE
T ss_pred             CCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEE
Confidence                     45788999987554311 1   1111      12356799999999987655  68999999999998888


Q ss_pred             eecccceeeeeEEecCCCEEEEecCC----------------------CCEEEEEECCCCCEEEEecCCC----cEEEEe
Q 022716          145 RRKFGYEVNEIAWNMTGEMFFLTTGN----------------------AGCYCIAIDPMGRYFAVGSADS----LVSLWD  198 (293)
Q Consensus       145 ~~~~~~~~~~v~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~l~~gs~d~----~i~iwd  198 (293)
                      ...+..++..+.|+|++..+...+.+                      ..+.+++|+|+++.+++++.|+    .+++|+
T Consensus       172 ~~~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~  251 (365)
T 4h5i_A          172 EIETRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKIS  251 (365)
T ss_dssp             EEECSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEE
T ss_pred             EeCCCCceEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecc
Confidence            88888889999999998876654322                      2467899999999999999887    688899


Q ss_pred             CCCCEE----EEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEE--ecCCCcceeEECCCCCeEEEEE
Q 022716          199 ISEMLC----VRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQI--PCRAAMNSVEWNPKYNLLAYAG  272 (293)
Q Consensus       199 ~~~~~~----~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~--~~~~~i~~~~~sp~~~~la~~~  272 (293)
                      +.....    ...+.+|..+|.+++|+|+|++||+|+.|+.|+|||+.+++.+..+  .|..+|++|+|||++++||+||
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S  331 (365)
T 4h5i_A          252 IKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVS  331 (365)
T ss_dssp             EETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEE
T ss_pred             cccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEe
Confidence            876543    3456788899999999999999999999999999999999988875  3567899999999999999999


Q ss_pred             cCCCCCCCCcceEEEEeee
Q 022716          273 DDKNKYQADEGVFRIYGFE  291 (293)
Q Consensus       273 ~d~~~~~~~~~~~~~~~~~  291 (293)
                      .|+        ++|||++.
T Consensus       332 ~D~--------tvrvw~ip  342 (365)
T 4h5i_A          332 AAN--------TIHIIKLP  342 (365)
T ss_dssp             TTS--------EEEEEECC
T ss_pred             CCC--------eEEEEEcC
Confidence            985        66777663

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.3e-37  Score=262.90  Aligned_cols=249  Identities=21%  Similarity=0.322  Sum_probs=200.0

Q ss_pred             cceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCC-CCCEEEEEeCCCe
Q 022716           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK-HADLIATASGDKT   90 (293)
Q Consensus        12 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~-~~~~l~s~~~d~~   90 (293)
                      ..+.+.+|.+.|.+++|+|++++|++|+.||.|++|++....  ......+.+|...|.+++|++. ++.+|++++.|+.
T Consensus         3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~   80 (379)
T 3jrp_A            3 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET--HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK   80 (379)
T ss_dssp             --CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTE--EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred             ccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCc--ceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCE
Confidence            345688999999999999999999999999999999996321  2233457789999999999865 2578999999999


Q ss_pred             EEEEeCCCCe--eeeeee-ecCceEEEEEcCC--CCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEE
Q 022716           91 VRLWDARSGK--CSQQAE-LSGENINITYKPD--GTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFF  165 (293)
Q Consensus        91 i~vwd~~~~~--~~~~~~-~~~~~~~~~~~~~--~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  165 (293)
                      |++||+.+++  ...... ....+.+++|+|+  +.++++++.|+.+++||++.......                  ..
T Consensus        81 v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~------------------~~  142 (379)
T 3jrp_A           81 VLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSP------------------II  142 (379)
T ss_dssp             EEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCE------------------EE
T ss_pred             EEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceee------------------EE
Confidence            9999999886  333333 4566789999999  99999999999999999987532211                  12


Q ss_pred             EecCCCCEEEEEECC-------------CCCEEEEecCCCcEEEEeCCCC----EEEEEeeccCCCeeEEEEccC---CC
Q 022716          166 LTTGNAGCYCIAIDP-------------MGRYFAVGSADSLVSLWDISEM----LCVRTFTKLEWPVRTISFSHT---GD  225 (293)
Q Consensus       166 ~~~~~~~~~~~~~~~-------------~~~~l~~gs~d~~i~iwd~~~~----~~~~~~~~~~~~v~~l~~sp~---~~  225 (293)
                      +..+...+.+++++|             ++.++++|+.|+.|++||++..    .....+.+|..+|.+++|+|+   ++
T Consensus       143 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~  222 (379)
T 3jrp_A          143 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS  222 (379)
T ss_dssp             EECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSE
T ss_pred             ecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCC
Confidence            234556677888888             6999999999999999998754    345677889999999999999   89


Q ss_pred             EEEEecCCCcEEEEEcCCCCE---EEEE---ecCCCcceeEECCCCCeEEEEEcCCCCCCC
Q 022716          226 YIASASEDLFIDISNVHTGRT---VHQI---PCRAAMNSVEWNPKYNLLAYAGDDKNKYQA  280 (293)
Q Consensus       226 ~l~s~s~d~~i~iw~~~~~~~---~~~~---~~~~~i~~~~~sp~~~~la~~~~d~~~~~~  280 (293)
                      +|++++.|+.|++||+.++..   ....   .+...|.+++|+|++++|++++.|+.+++|
T Consensus       223 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw  283 (379)
T 3jrp_A          223 YLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW  283 (379)
T ss_dssp             EEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEE
T ss_pred             eEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEE
Confidence            999999999999999988742   2222   245679999999999999999988544433

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=3e-37  Score=284.14  Aligned_cols=251  Identities=18%  Similarity=0.287  Sum_probs=209.7

Q ss_pred             eeecCccccEEEEEECCCC-CeEEEEeCCCcEEEeecCCCCCC-ceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716           14 REYTGHKKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHG-KVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (293)
Q Consensus        14 ~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~v~iw~~~~~~~~-~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i   91 (293)
                      ..+.+|.+.|++++|+|++ ++|+|||.||+|++|++...... ......+.+|...|.+++|+|+ +.+|+||+.|+.|
T Consensus       376 ~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~-g~~l~sgs~Dg~v  454 (694)
T 3dm0_A          376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSD-GQFALSGSWDGEL  454 (694)
T ss_dssp             EEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTT-SSEEEEEETTSEE
T ss_pred             hhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCC-CCEEEEEeCCCcE
Confidence            4578999999999999875 78999999999999999753321 2233467899999999999997 4789999999999


Q ss_pred             EEEeCCCCeeeeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCC
Q 022716           92 RLWDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGN  170 (293)
Q Consensus        92 ~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  170 (293)
                      ++||+.++.+...+. +...+.+++|+|+++++++++.|++|++||+...........                 ...+.
T Consensus       455 ~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~-----------------~~~h~  517 (694)
T 3dm0_A          455 RLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEG-----------------GEGHR  517 (694)
T ss_dssp             EEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSS-----------------TTSCS
T ss_pred             EEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccC-----------------CCCCC
Confidence            999999998877665 456678999999999999999999999999764322111000                 01244


Q ss_pred             CCEEEEEECCCC--CEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEE
Q 022716          171 AGCYCIAIDPMG--RYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVH  248 (293)
Q Consensus       171 ~~~~~~~~~~~~--~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~  248 (293)
                      ..+.+++|+|++  ..+++|+.|++|++||++++.....+.+|...|.+++|+|++++|++|+.|+.|++||+.+++.+.
T Consensus       518 ~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~  597 (694)
T 3dm0_A          518 DWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLY  597 (694)
T ss_dssp             SCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEE
T ss_pred             CcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEE
Confidence            568899999986  689999999999999999998889999999999999999999999999999999999999999888


Q ss_pred             EEecCCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeee
Q 022716          249 QIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE  291 (293)
Q Consensus       249 ~~~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~  291 (293)
                      .+.....|.+++|+|++.++++++++         .+|||+++
T Consensus       598 ~~~~~~~v~~~~~sp~~~~l~~~~~~---------~i~iwd~~  631 (694)
T 3dm0_A          598 SLEANSVIHALCFSPNRYWLCAATEH---------GIKIWDLE  631 (694)
T ss_dssp             CCBCSSCEEEEEECSSSSEEEEEETT---------EEEEEETT
T ss_pred             EecCCCcEEEEEEcCCCcEEEEEcCC---------CEEEEECC
Confidence            88778889999999999888877643         36666654

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.5e-37  Score=263.04  Aligned_cols=253  Identities=15%  Similarity=0.203  Sum_probs=196.8

Q ss_pred             eecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCC-------CCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeC
Q 022716           15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEP-------HGHGKVKDIELRGHADSVDQLCWDPKHADLIATASG   87 (293)
Q Consensus        15 ~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~-------~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~   87 (293)
                      ....|...|.+++|+|||++|++++ |+++|+||...       .............|...|.+++|+|+  ..|++|+.
T Consensus        25 ~~~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d--~~l~~~s~  101 (344)
T 4gqb_B           25 APACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGE--RGILVASD  101 (344)
T ss_dssp             SCSSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETT--TEEEEEET
T ss_pred             CcccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCC--CeEEEEEC
Confidence            3446788999999999999998887 78888887320       00000011122346678999999986  46889999


Q ss_pred             CCeEEEEeCCCCeeeeee-----eecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCC
Q 022716           88 DKTVRLWDARSGKCSQQA-----ELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGE  162 (293)
Q Consensus        88 d~~i~vwd~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~  162 (293)
                      ||+|++||+.++++....     .+...+.+++|+|+|++|++|+.|++|++||+++.+++..                 
T Consensus       102 dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~-----------------  164 (344)
T 4gqb_B          102 SGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSS-----------------  164 (344)
T ss_dssp             TSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE-----------------
T ss_pred             CCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEE-----------------
Confidence            999999999988754432     2345688999999999999999999999999988665443                 


Q ss_pred             EEEEecCCCCEEEEEECCCC-CEEEEecCCCcEEEEeCCCCEEEEEee--ccCCCeeEEEEccC-CCEEEEecCCCcEEE
Q 022716          163 MFFLTTGNAGCYCIAIDPMG-RYFAVGSADSLVSLWDISEMLCVRTFT--KLEWPVRTISFSHT-GDYIASASEDLFIDI  238 (293)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~-~~l~~gs~d~~i~iwd~~~~~~~~~~~--~~~~~v~~l~~sp~-~~~l~s~s~d~~i~i  238 (293)
                         +..+...+.+++|+|++ .++++|+.|++|++||+++++....+.  .+...+.+++|+|+ +++|++|+.|+.|++
T Consensus       165 ---~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~  241 (344)
T 4gqb_B          165 ---YRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSL  241 (344)
T ss_dssp             ---ECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEE
T ss_pred             ---EcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEE
Confidence               23456778899999988 578999999999999999887777664  34567999999995 568899999999999


Q ss_pred             EEcCCCCEEEEEe-cCCCcceeEECCCC-CeEEEEEcCCCCCCCCcceEEEEee
Q 022716          239 SNVHTGRTVHQIP-CRAAMNSVEWNPKY-NLLAYAGDDKNKYQADEGVFRIYGF  290 (293)
Q Consensus       239 w~~~~~~~~~~~~-~~~~i~~~~~sp~~-~~la~~~~d~~~~~~~~~~~~~~~~  290 (293)
                      ||+.+++.+..+. +...|++++|+|++ ++||+|+.|+.+++||...-+++.+
T Consensus       242 wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~  295 (344)
T 4gqb_B          242 VDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRS  295 (344)
T ss_dssp             EESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEE
T ss_pred             EECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEE
Confidence            9999998887775 56689999999998 6899999998877777655555443

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=3e-36  Score=271.36  Aligned_cols=262  Identities=26%  Similarity=0.392  Sum_probs=217.1

Q ss_pred             cceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (293)
Q Consensus        12 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i   91 (293)
                      ..+.+.+|...|.+++|+|+++.|++++.|+.|++|+...    . ....+.+|...|.+++++|+ ...|++++.|+.|
T Consensus       254 ~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~----~-~~~~~~~h~~~v~~~~~~~~-~~~l~t~~~d~~i  327 (577)
T 2ymu_A          254 LLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNG----Q-LLQTLTGHSSSVWGVAFSPD-GQTIASASDDKTV  327 (577)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS----C-EEEEECCCSSCEEEEEECTT-SSEEEEEETTSCE
T ss_pred             EEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCC----c-EEEEEecCCCCeEEEEECCC-CCEEEEEeCCCeE
Confidence            3456789999999999999999999999999999999753    1 22356799999999999997 4689999999999


Q ss_pred             EEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEec---
Q 022716           92 RLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTT---  168 (293)
Q Consensus        92 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---  168 (293)
                      ++||...............+.+++|+|+++.+++++.|+.+++||...........+...+..+.|+|++..+...+   
T Consensus       328 ~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~  407 (577)
T 2ymu_A          328 KLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDK  407 (577)
T ss_dssp             EEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTS
T ss_pred             EEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCC
Confidence            99998765544333445667889999999999999999999999965433333334566788888888776554332   


Q ss_pred             -----------------CCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEec
Q 022716          169 -----------------GNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASAS  231 (293)
Q Consensus       169 -----------------~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s  231 (293)
                                       +...+.+++|+|++++|++++.|++|++||. +++.+..+.+|..+|.+++|+|++++|++++
T Consensus       408 ~v~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~  486 (577)
T 2ymu_A          408 TVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASAS  486 (577)
T ss_dssp             EEEEECTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEE
T ss_pred             EEEEEeCCCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEe
Confidence                             3456789999999999999999999999996 4566778899999999999999999999999


Q ss_pred             CCCcEEEEEcCCCCEEEEEe-cCCCcceeEECCCCCeEEEEEcCCCCCCCC
Q 022716          232 EDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNKYQAD  281 (293)
Q Consensus       232 ~d~~i~iw~~~~~~~~~~~~-~~~~i~~~~~sp~~~~la~~~~d~~~~~~~  281 (293)
                      .|+.|++||. +++.+..+. +..+|++++|+|++++||+++.|+.+++|+
T Consensus       487 ~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd  536 (577)
T 2ymu_A          487 DDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN  536 (577)
T ss_dssp             TTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             CCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEe
Confidence            9999999995 677777665 466899999999999999999997665554

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-37  Score=268.90  Aligned_cols=267  Identities=13%  Similarity=0.200  Sum_probs=217.8

Q ss_pred             cCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeC
Q 022716           17 TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDA   96 (293)
Q Consensus        17 ~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~   96 (293)
                      .+|...|.+++|+|++++|++|+.||.|++|++............+.+|...|.+++|+|++..+|++++.|+.|++||+
T Consensus        64 ~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~  143 (416)
T 2pm9_A           64 LQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDM  143 (416)
T ss_dssp             CCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBT
T ss_pred             EecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEEC
Confidence            46889999999999999999999999999999975322222445677899999999999986679999999999999999


Q ss_pred             CCCe------eeeee----eecCceEEEEEcCC-CCEEEEEeCCCeEEEEEccccceeeeecc-------cceeeeeEEe
Q 022716           97 RSGK------CSQQA----ELSGENINITYKPD-GTHIAVGNRDDELTILDVRKFKPIHRRKF-------GYEVNEIAWN  158 (293)
Q Consensus        97 ~~~~------~~~~~----~~~~~~~~~~~~~~-~~~l~~~~~d~~i~l~d~~~~~~~~~~~~-------~~~~~~v~~~  158 (293)
                      .+++      .....    .+...+.+++|+|+ +..+++++.|+.+++||+++.+.......       ...+..+.|+
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  223 (416)
T 2pm9_A          144 NKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWH  223 (416)
T ss_dssp             TTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEEC
T ss_pred             CCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEEC
Confidence            8876      32222    24456789999999 78999999999999999998877766554       4668889999


Q ss_pred             cCCC-EEEEec--------------------------CCCCEEEEEECC-CCCEEEEecCCCcEEEEeCCCCEEEEEeec
Q 022716          159 MTGE-MFFLTT--------------------------GNAGCYCIAIDP-MGRYFAVGSADSLVSLWDISEMLCVRTFTK  210 (293)
Q Consensus       159 ~~~~-~~~~~~--------------------------~~~~~~~~~~~~-~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~  210 (293)
                      |.+. .+....                          +...+.+++|+| ++++|++++.|+.|++||+++++.+..+..
T Consensus       224 ~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~  303 (416)
T 2pm9_A          224 PKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPA  303 (416)
T ss_dssp             SSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEEC
T ss_pred             CCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecC
Confidence            8763 333222                          224578999999 899999999999999999999999999999


Q ss_pred             cCCCeeEEEEccCC-CEEEEecCCCcEEEEEcCCCCEEEE---------------Ee---------------------cC
Q 022716          211 LEWPVRTISFSHTG-DYIASASEDLFIDISNVHTGRTVHQ---------------IP---------------------CR  253 (293)
Q Consensus       211 ~~~~v~~l~~sp~~-~~l~s~s~d~~i~iw~~~~~~~~~~---------------~~---------------------~~  253 (293)
                      |..+|.+++|+|++ .+|++++.|+.|++|++.++.....               +.                     +.
T Consensus       304 ~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (416)
T 2pm9_A          304 RGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYG  383 (416)
T ss_dssp             SSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTC
T ss_pred             CCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCcccc
Confidence            99999999999999 8999999999999999987642110               00                     34


Q ss_pred             CCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeee
Q 022716          254 AAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE  291 (293)
Q Consensus       254 ~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~  291 (293)
                      .++.+++|+|+|++||+++.|+        .++||+++
T Consensus       384 ~~~~~~~~s~dg~~la~~~~d~--------~v~~w~~~  413 (416)
T 2pm9_A          384 EPSPAAHWAFGGKLVQITPDGK--------GVSITNPK  413 (416)
T ss_dssp             CCSCCCEEETTTEEECBCTTSS--------CBCCBCCC
T ss_pred             CCccceEEeeCCeEEEEeCCCC--------eEEEEEec
Confidence            5677999999999999999875        45566554

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=2.1e-36  Score=256.75  Aligned_cols=262  Identities=20%  Similarity=0.266  Sum_probs=209.5

Q ss_pred             cceeecCccccEEEEEECCC---CCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCC
Q 022716           12 HSREYTGHKKKVHSVAWNCT---GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD   88 (293)
Q Consensus        12 ~~~~~~~h~~~v~~l~~s~~---~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d   88 (293)
                      ..+.+.+|.+.|.+++|+|+   |++|++|+.||.|++||+....  ......+.+|...|.+++|+|+ +.+|++++.|
T Consensus        31 ~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~d  107 (368)
T 3mmy_A           31 DIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSG--QTIPKAQQMHTGPVLDVCWSDD-GSKVFTASCD  107 (368)
T ss_dssp             CEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTS--CEEEEEEEECSSCEEEEEECTT-SSEEEEEETT
T ss_pred             eeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCC--ceeEEEeccccCCEEEEEECcC-CCEEEEEcCC
Confidence            34567899999999999999   6999999999999999997522  2233457789999999999996 5689999999


Q ss_pred             CeEEEEeCCCCeeeeeeeecCceEEEEE--cCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEE
Q 022716           89 KTVRLWDARSGKCSQQAELSGENINITY--KPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFL  166 (293)
Q Consensus        89 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  166 (293)
                      +.|++||+.+++......+...+.+++|  +|+++++++++.|+.+++||+++.++.........+..+.+...  .+++
T Consensus       108 g~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  185 (368)
T 3mmy_A          108 KTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYP--MAVV  185 (368)
T ss_dssp             SEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETT--EEEE
T ss_pred             CcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCC--eeEE
Confidence            9999999999988877777788889999  89999999999999999999998887766655444444333321  1111


Q ss_pred             ec-----------------------CCCCEEEEEECCCCCE----EEEecCCCcEEEEeCCCC---EEEEEeeccCC---
Q 022716          167 TT-----------------------GNAGCYCIAIDPMGRY----FAVGSADSLVSLWDISEM---LCVRTFTKLEW---  213 (293)
Q Consensus       167 ~~-----------------------~~~~~~~~~~~~~~~~----l~~gs~d~~i~iwd~~~~---~~~~~~~~~~~---  213 (293)
                      ..                       ......++++.++...    +++++.|+.|++||++..   ..+..+..|..   
T Consensus       186 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~  265 (368)
T 3mmy_A          186 ATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGT  265 (368)
T ss_dssp             EEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC--
T ss_pred             EeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccc
Confidence            11                       1123344555444433    999999999999999876   34556666654   


Q ss_pred             ---------CeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEe-cCCCcceeEECCCCCeEEEEEcCCCCC
Q 022716          214 ---------PVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNKY  278 (293)
Q Consensus       214 ---------~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~-~~~~i~~~~~sp~~~~la~~~~d~~~~  278 (293)
                               +|.+++|+|++++|++|+.|+.|++||+.+++.+..+. +..+|.+++|+|++.+||+++.|+...
T Consensus       266 ~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~  340 (368)
T 3mmy_A          266 NTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSK  340 (368)
T ss_dssp             --CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTT
T ss_pred             cccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccc
Confidence                     79999999999999999999999999999998888775 466899999999999999999886444

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=3.3e-36  Score=259.39  Aligned_cols=239  Identities=22%  Similarity=0.355  Sum_probs=192.2

Q ss_pred             cCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCC------------------cCCeeEEEEcCCC
Q 022716           17 TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGH------------------ADSVDQLCWDPKH   78 (293)
Q Consensus        17 ~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h------------------~~~i~~~~~~~~~   78 (293)
                      .+|.+.|.+++|+|+|++||+|+ |+++++|++....  .  ...+..|                  ...|.+++|+|+ 
T Consensus        61 ~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~--~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d-  134 (393)
T 1erj_A           61 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGS--L--VARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPD-  134 (393)
T ss_dssp             EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCC--E--EEEECC-----------------CCCCBEEEEEECTT-
T ss_pred             cCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCC--E--EEEecCccccccccccccccccCCCceeEEEEEECCC-
Confidence            36999999999999999999976 7899999987532  1  1122222                  234899999997 


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCeeeeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEE
Q 022716           79 ADLIATASGDKTVRLWDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAW  157 (293)
Q Consensus        79 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~  157 (293)
                      +.+|++|+.|+.|++||+.+++....+. +...+.+++|+|++++|++++.|+++++||+++.+.....           
T Consensus       135 g~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~-----------  203 (393)
T 1erj_A          135 GKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL-----------  203 (393)
T ss_dssp             SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-----------
T ss_pred             CCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEE-----------
Confidence            4689999999999999999988777665 4456788999999999999999999999999876543322           


Q ss_pred             ecCCCEEEEecCCCCEEEEEECC-CCCEEEEecCCCcEEEEeCCCCEEEEEe-------eccCCCeeEEEEccCCCEEEE
Q 022716          158 NMTGEMFFLTTGNAGCYCIAIDP-MGRYFAVGSADSLVSLWDISEMLCVRTF-------TKLEWPVRTISFSHTGDYIAS  229 (293)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~gs~d~~i~iwd~~~~~~~~~~-------~~~~~~v~~l~~sp~~~~l~s  229 (293)
                                .....+.+++++| +++++++|+.|+.|++||++++..+..+       .+|...|.+++|+|+|++|++
T Consensus       204 ----------~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s  273 (393)
T 1erj_A          204 ----------SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVS  273 (393)
T ss_dssp             ----------ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEE
T ss_pred             ----------EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEE
Confidence                      1234567889998 8999999999999999999988777665       568889999999999999999


Q ss_pred             ecCCCcEEEEEcCCCC------------EEEEE-ecCCCcceeEECCCCCeEEEEEcCCCCCCCCc
Q 022716          230 ASEDLFIDISNVHTGR------------TVHQI-PCRAAMNSVEWNPKYNLLAYAGDDKNKYQADE  282 (293)
Q Consensus       230 ~s~d~~i~iw~~~~~~------------~~~~~-~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~  282 (293)
                      |+.|+.|++||+.+..            ....+ .+...|.+++|+|++.+|++|+.|+.+++|+.
T Consensus       274 ~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~  339 (393)
T 1erj_A          274 GSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDK  339 (393)
T ss_dssp             EETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEET
T ss_pred             EeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence            9999999999997642            22233 35567999999999999999999976655543

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=5.3e-36  Score=254.28  Aligned_cols=267  Identities=12%  Similarity=0.179  Sum_probs=215.4

Q ss_pred             eecCccccEEEEEECCC----CCeEEEEeCCCcEEEeecCCCCCCc-eeEEEeeCCcCCeeEEEEcCCC---CCEEEEEe
Q 022716           15 EYTGHKKKVHSVAWNCT----GTKLASGSVDQTARVWHIEPHGHGK-VKDIELRGHADSVDQLCWDPKH---ADLIATAS   86 (293)
Q Consensus        15 ~~~~h~~~v~~l~~s~~----~~~l~s~~~dg~v~iw~~~~~~~~~-~~~~~~~~h~~~i~~~~~~~~~---~~~l~s~~   86 (293)
                      ...+|.++|.+++|+|+    ...+++++.++.|++|++....... ........|...|.+++|+|+.   +.+|++|+
T Consensus        13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~   92 (366)
T 3k26_A           13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG   92 (366)
T ss_dssp             EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred             eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence            34589999999999984    4567777778899999997432111 1111122367889999999874   24899999


Q ss_pred             CCCeEEEEeCCCCeeeeeee-ecCceEEEEEcC-CCCEEEEEeCCCeEEEEEccccceeeee----cccceeeeeEEecC
Q 022716           87 GDKTVRLWDARSGKCSQQAE-LSGENINITYKP-DGTHIAVGNRDDELTILDVRKFKPIHRR----KFGYEVNEIAWNMT  160 (293)
Q Consensus        87 ~d~~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~-~~~~l~~~~~d~~i~l~d~~~~~~~~~~----~~~~~~~~v~~~~~  160 (293)
                      .|+.|++||+.+++....+. +...+.+++|+| ++..+++++.|+.|++||+++.+.....    .+...+..+.|++.
T Consensus        93 ~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~  172 (366)
T 3k26_A           93 SRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL  172 (366)
T ss_dssp             TTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTT
T ss_pred             CCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCC
Confidence            99999999999988877776 556788999999 8999999999999999999988777665    46678999999998


Q ss_pred             CCEEEEecCC-------------------------------------------------CCEEEEEECCCCCEEEEecCC
Q 022716          161 GEMFFLTTGN-------------------------------------------------AGCYCIAIDPMGRYFAVGSAD  191 (293)
Q Consensus       161 ~~~~~~~~~~-------------------------------------------------~~~~~~~~~~~~~~l~~gs~d  191 (293)
                      +..++....+                                                 ..+.+++++  ++++++++.|
T Consensus       173 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d  250 (366)
T 3k26_A          173 GEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCE  250 (366)
T ss_dssp             SSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSS
T ss_pred             CCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecC
Confidence            8776654432                                                 335566666  7899999999


Q ss_pred             CcEEEEeCCCC--------------EEEEEeeccCCCeeEEEEccC--CCEEEEecCCCcEEEEEcCCCC----EEEEEe
Q 022716          192 SLVSLWDISEM--------------LCVRTFTKLEWPVRTISFSHT--GDYIASASEDLFIDISNVHTGR----TVHQIP  251 (293)
Q Consensus       192 ~~i~iwd~~~~--------------~~~~~~~~~~~~v~~l~~sp~--~~~l~s~s~d~~i~iw~~~~~~----~~~~~~  251 (293)
                      +.|++||+.++              ..+..+..|..+|.+++|+|+  +++|++|+.|+.|++||+.+++    ....+.
T Consensus       251 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~  330 (366)
T 3k26_A          251 NAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLT  330 (366)
T ss_dssp             SEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEEC
T ss_pred             CEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEc
Confidence            99999998765              347778889999999999999  9999999999999999999875    334554


Q ss_pred             c---CCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeee
Q 022716          252 C---RAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE  291 (293)
Q Consensus       252 ~---~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~  291 (293)
                      .   ..+|++++|+|++++|++++.|        +.++||++.
T Consensus       331 ~~~~~~~v~~~~~s~~~~~l~s~~~d--------g~i~iwd~~  365 (366)
T 3k26_A          331 HHKCGAAIRQTSFSRDSSILIAVCDD--------ASIWRWDRL  365 (366)
T ss_dssp             CTTCCSCEEEEEECTTSSEEEEEETT--------SEEEEEEC-
T ss_pred             ccccCCceEEEEeCCCCCeEEEEeCC--------CEEEEEEec
Confidence            4   4789999999999999999987        578888875

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-35  Score=245.91  Aligned_cols=261  Identities=19%  Similarity=0.216  Sum_probs=209.4

Q ss_pred             ccceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCe
Q 022716           11 LHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKT   90 (293)
Q Consensus        11 ~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~   90 (293)
                      ...+.+.+|.+.|.+++| |++++|++|+.||.|++||+...    .....+..|...|.+++|+|+ +.+|++++.|+.
T Consensus         9 ~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~----~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~   82 (313)
T 3odt_A            9 QLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQ----WLGTVVYTGQGFLNSVCYDSE-KELLLFGGKDTM   82 (313)
T ss_dssp             EEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSS----EEEEEEEECSSCEEEEEEETT-TTEEEEEETTSC
T ss_pred             HHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCC----EEEEEeecCCccEEEEEECCC-CCEEEEecCCCe
Confidence            355778999999999999 99999999999999999999642    233456688999999999996 578999999999


Q ss_pred             EEEEeCCCCe---eeeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeee-ecccceeeeeEEec-CCCEE
Q 022716           91 VRLWDARSGK---CSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR-RKFGYEVNEIAWNM-TGEMF  164 (293)
Q Consensus        91 i~vwd~~~~~---~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~-~~~~~~~~~v~~~~-~~~~~  164 (293)
                      +++|++....   ....+. +...+.++.|  +++.+++++.|+.+++||.  ...... ..+...+..+.|.+ .+..+
T Consensus        83 i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~--~~~~~~~~~~~~~v~~~~~~~~~~~~l  158 (313)
T 3odt_A           83 INGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWKE--GSLVYNLQAHNASVWDAKVVSFSENKF  158 (313)
T ss_dssp             EEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEET--TEEEEEEECCSSCEEEEEEEETTTTEE
T ss_pred             EEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEcC--CcEEEecccCCCceeEEEEccCCCCEE
Confidence            9999986542   233333 3455667777  5789999999999999992  233322 23455677777776 44444


Q ss_pred             EEec--------------------CCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCC
Q 022716          165 FLTT--------------------GNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTG  224 (293)
Q Consensus       165 ~~~~--------------------~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~  224 (293)
                      ....                    +...+.+++++|++. +++++.|+.|++||+++++.+..+..|..+|.+++|+|++
T Consensus       159 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~  237 (313)
T 3odt_A          159 LTASADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG  237 (313)
T ss_dssp             EEEETTSCEEEEETTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS
T ss_pred             EEEECCCCEEEEecCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC
Confidence            4332                    345688999999998 9999999999999999999999999999999999999999


Q ss_pred             CEEEEecCCCcEEEEEcCCCCEEEEEec-CCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeeec
Q 022716          225 DYIASASEDLFIDISNVHTGRTVHQIPC-RAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN  292 (293)
Q Consensus       225 ~~l~s~s~d~~i~iw~~~~~~~~~~~~~-~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~~  292 (293)
                       .|++++.|+.|++||+.+++.+..+.. ..+|.+++|+|++. +++++.|        +.++||++++
T Consensus       238 -~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~d--------g~i~iw~~~~  296 (313)
T 3odt_A          238 -DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSD--------NLVRIFSQEK  296 (313)
T ss_dssp             -CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETT--------SCEEEEESCG
T ss_pred             -CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCC--------CcEEEEeCCC
Confidence             699999999999999999998887764 44899999999998 5567777        4667777653

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=1e-36  Score=258.03  Aligned_cols=270  Identities=12%  Similarity=0.163  Sum_probs=207.3

Q ss_pred             cceeecCccccEEEEEECCCCCeE-EEEeC---CCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCC--CCEEEEE
Q 022716           12 HSREYTGHKKKVHSVAWNCTGTKL-ASGSV---DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKH--ADLIATA   85 (293)
Q Consensus        12 ~~~~~~~h~~~v~~l~~s~~~~~l-~s~~~---dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~--~~~l~s~   85 (293)
                      ..+.+.+|...|.+++|+|+++.+ ++|+.   ||.|++||+...   ........+|...|.+++|+|+.  +.+|+++
T Consensus        10 ~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~   86 (357)
T 3i2n_A           10 IAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHG---DLKLLREIEKAKPIKCGTFGATSLQQRYLATG   86 (357)
T ss_dssp             EEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSS---SEEEEEEEEESSCEEEEECTTCCTTTCCEEEE
T ss_pred             hhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCC---cccceeeecccCcEEEEEEcCCCCCCceEEEe
Confidence            345567899999999999999765 56665   999999999753   22333344789999999999974  5789999


Q ss_pred             eCCCeEEEEeCCCCe-eeeeee-ecCceEEEE------EcCCCCEEEEEeCCCeEEEEEccccc-eeeeecc-----cce
Q 022716           86 SGDKTVRLWDARSGK-CSQQAE-LSGENINIT------YKPDGTHIAVGNRDDELTILDVRKFK-PIHRRKF-----GYE  151 (293)
Q Consensus        86 ~~d~~i~vwd~~~~~-~~~~~~-~~~~~~~~~------~~~~~~~l~~~~~d~~i~l~d~~~~~-~~~~~~~-----~~~  151 (293)
                      +.|+.|++||+.+++ ....+. +...+.++.      |+|+++.|++++.|+.+++||+++.. +......     ...
T Consensus        87 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~  166 (357)
T 3i2n_A           87 DFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRD  166 (357)
T ss_dssp             ETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCC
T ss_pred             cCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCc
Confidence            999999999998876 555554 345566774      56899999999999999999998765 4443321     224


Q ss_pred             eeeeE----EecCCCEEEEec--------------------CCCCEEEEEECC---CCCEEEEecCCCcEEEEeCCCCEE
Q 022716          152 VNEIA----WNMTGEMFFLTT--------------------GNAGCYCIAIDP---MGRYFAVGSADSLVSLWDISEMLC  204 (293)
Q Consensus       152 ~~~v~----~~~~~~~~~~~~--------------------~~~~~~~~~~~~---~~~~l~~gs~d~~i~iwd~~~~~~  204 (293)
                      +..+.    |++.+..+....                    +...+.+++++|   ++.++++|+.||.|++||++++..
T Consensus       167 v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  246 (357)
T 3i2n_A          167 CWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHP  246 (357)
T ss_dssp             EEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEET
T ss_pred             eEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCc
Confidence            55665    455555544333                    345688999999   999999999999999999876543


Q ss_pred             EEE-----eeccCCCeeEEEEccCCC-EEEEecCCCcEEEEEcCCCC-------------------EEEEEe-cCCCcce
Q 022716          205 VRT-----FTKLEWPVRTISFSHTGD-YIASASEDLFIDISNVHTGR-------------------TVHQIP-CRAAMNS  258 (293)
Q Consensus       205 ~~~-----~~~~~~~v~~l~~sp~~~-~l~s~s~d~~i~iw~~~~~~-------------------~~~~~~-~~~~i~~  258 (293)
                      ...     +.+|..+|.+++|+|+++ +|++|+.|+.|++||+.++.                   .+..+. +..+|.+
T Consensus       247 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~  326 (357)
T 3i2n_A          247 TKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISS  326 (357)
T ss_dssp             TTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEE
T ss_pred             ccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeE
Confidence            333     348999999999999998 89999999999999997643                   333443 5668999


Q ss_pred             eEECCCCCeEE-EEEcCCCCCCCCcceEEEEeeec
Q 022716          259 VEWNPKYNLLA-YAGDDKNKYQADEGVFRIYGFEN  292 (293)
Q Consensus       259 ~~~sp~~~~la-~~~~d~~~~~~~~~~~~~~~~~~  292 (293)
                      ++|+|++++|+ +++.|        +.++||++++
T Consensus       327 ~~~s~~~~~l~~s~~~d--------~~i~iw~~~~  353 (357)
T 3i2n_A          327 LDWSPDKRGLCVCSSFD--------QTVRVLIVTK  353 (357)
T ss_dssp             EEECSSSTTEEEEEETT--------SEEEEEEECC
T ss_pred             EEEcCCCCeEEEEecCC--------CcEEEEECCC
Confidence            99999999998 78877        5788888865

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=2.1e-35  Score=254.12  Aligned_cols=252  Identities=18%  Similarity=0.266  Sum_probs=204.7

Q ss_pred             cceeecCccccEEEEEECC-CCCeEEEEeCCCcEEEeecCCCCCCceeEEE---------eeCCcCCeeEEEEcCCCCCE
Q 022716           12 HSREYTGHKKKVHSVAWNC-TGTKLASGSVDQTARVWHIEPHGHGKVKDIE---------LRGHADSVDQLCWDPKHADL   81 (293)
Q Consensus        12 ~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~---------~~~h~~~i~~~~~~~~~~~~   81 (293)
                      ..+.+.+|.+.|.+++|+| ++++|++|+.||.|++||+............         ..+|...|.+++|+|.+..+
T Consensus        35 ~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  114 (408)
T 4a11_B           35 DRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGM  114 (408)
T ss_dssp             TEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTC
T ss_pred             ceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcE
Confidence            3456778999999999999 9999999999999999999864322211110         02599999999999966778


Q ss_pred             EEEEeCCCeEEEEeCCCCeeeeeeeecCceEEEEEcCC---CCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEe
Q 022716           82 IATASGDKTVRLWDARSGKCSQQAELSGENINITYKPD---GTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWN  158 (293)
Q Consensus        82 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~  158 (293)
                      |++++.|+.|++||+.+++....+.....+.++.+.|.   +..+++++.|+.+.+||+++......             
T Consensus       115 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~-------------  181 (408)
T 4a11_B          115 FTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHI-------------  181 (408)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEE-------------
T ss_pred             EEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeee-------------
Confidence            99999999999999999998888888888888999874   45999999999999999987654432             


Q ss_pred             cCCCEEEEecCCCCEEEEEECCCCC-EEEEecCCCcEEEEeCCCCE-EEEEe---------------eccCCCeeEEEEc
Q 022716          159 MTGEMFFLTTGNAGCYCIAIDPMGR-YFAVGSADSLVSLWDISEML-CVRTF---------------TKLEWPVRTISFS  221 (293)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~gs~d~~i~iwd~~~~~-~~~~~---------------~~~~~~v~~l~~s  221 (293)
                             +..+...+.+++++|+++ .+++|+.||.|++||+++.. .+..+               ..|..+|.+++|+
T Consensus       182 -------~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  254 (408)
T 4a11_B          182 -------LQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFT  254 (408)
T ss_dssp             -------ECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEEC
T ss_pred             -------ecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEc
Confidence                   234566788999999998 58999999999999997653 23333               4678899999999


Q ss_pred             cCCCEEEEecCCCcEEEEEcCCCC-----------------------------------------------EEEEEe-cC
Q 022716          222 HTGDYIASASEDLFIDISNVHTGR-----------------------------------------------TVHQIP-CR  253 (293)
Q Consensus       222 p~~~~l~s~s~d~~i~iw~~~~~~-----------------------------------------------~~~~~~-~~  253 (293)
                      |++++|++++.|+.|++||+.+++                                               .+..+. +.
T Consensus       255 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~  334 (408)
T 4a11_B          255 SDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHY  334 (408)
T ss_dssp             TTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCS
T ss_pred             CCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCC
Confidence            999999999999999999987643                                               233333 45


Q ss_pred             CCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeee
Q 022716          254 AAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE  291 (293)
Q Consensus       254 ~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~  291 (293)
                      .+|.+++|+|++++|++++.|+        .++||+++
T Consensus       335 ~~v~~~~~s~~~~~l~s~~~dg--------~i~iw~~~  364 (408)
T 4a11_B          335 KTVDCCVFQSNFQELYSGSRDC--------NILAWVPS  364 (408)
T ss_dssp             SCEEEEEEETTTTEEEEEETTS--------CEEEEEEC
T ss_pred             CeEEEEEEcCCCCEEEEECCCC--------eEEEEeCC
Confidence            6899999999999999999885        56666654

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9e-36  Score=257.63  Aligned_cols=257  Identities=14%  Similarity=0.205  Sum_probs=216.8

Q ss_pred             ccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCC
Q 022716           19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS   98 (293)
Q Consensus        19 h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~   98 (293)
                      |.+.|++++|+|++++|++|+.||.|++|+...    . ....+.+|...|.+++|+|+ +.+|++++.|+.|++||+.+
T Consensus       107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~----~-~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~  180 (425)
T 1r5m_A          107 TTNQVTCLAWSHDGNSIVTGVENGELRLWNKTG----A-LLNVLNFHRAPIVSVKWNKD-GTHIISMDVENVTILWNVIS  180 (425)
T ss_dssp             -CBCEEEEEECTTSSEEEEEETTSCEEEEETTS----C-EEEEECCCCSCEEEEEECTT-SSEEEEEETTCCEEEEETTT
T ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEeCCC----C-eeeeccCCCccEEEEEECCC-CCEEEEEecCCeEEEEECCC
Confidence            688999999999999999999999999999432    1 23457789999999999997 46889999999999999999


Q ss_pred             CeeeeeeeecCc----------------eEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeec-ccceeeeeEEecCC
Q 022716           99 GKCSQQAELSGE----------------NINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTG  161 (293)
Q Consensus        99 ~~~~~~~~~~~~----------------~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~-~~~~~~~v~~~~~~  161 (293)
                      ++....+..+..                +.++.|.|++ .+++++.++.+.+||+++..+..... +...+..+.|++.+
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~  259 (425)
T 1r5m_A          181 GTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTN  259 (425)
T ss_dssp             TEEEEEECCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTT
T ss_pred             CcEEEEeeccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCC
Confidence            887776554433                5678888875 58899999999999999877665543 45678899999988


Q ss_pred             CEEEEecC---------------------CCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEE
Q 022716          162 EMFFLTTG---------------------NAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISF  220 (293)
Q Consensus       162 ~~~~~~~~---------------------~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~  220 (293)
                      ..++....                     ...+.+++++|++ .+++++.|+.|++||++++..+..+..|..+|.+++|
T Consensus       260 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~  338 (425)
T 1r5m_A          260 KLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRI  338 (425)
T ss_dssp             TEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEE
T ss_pred             CEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEE
Confidence            76664442                     3457899999999 9999999999999999999999999999999999999


Q ss_pred             ccCCCEEEEecCCCcEEEEEcCCCC--------------------EEEEEecC--C-CcceeEECCCCCeEEEEEcCCCC
Q 022716          221 SHTGDYIASASEDLFIDISNVHTGR--------------------TVHQIPCR--A-AMNSVEWNPKYNLLAYAGDDKNK  277 (293)
Q Consensus       221 sp~~~~l~s~s~d~~i~iw~~~~~~--------------------~~~~~~~~--~-~i~~~~~sp~~~~la~~~~d~~~  277 (293)
                      +|++++|++++.|+.|++|++.+++                    .+..+..+  . .|.+++|+|++++|++++.|   
T Consensus       339 s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---  415 (425)
T 1r5m_A          339 SQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSL---  415 (425)
T ss_dssp             CTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESS---
T ss_pred             cCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecC---
Confidence            9999999999999999999998877                    66766544  4 89999999999999999987   


Q ss_pred             CCCCcceEEEEeee
Q 022716          278 YQADEGVFRIYGFE  291 (293)
Q Consensus       278 ~~~~~~~~~~~~~~  291 (293)
                           +.++||+++
T Consensus       416 -----g~i~iw~~~  424 (425)
T 1r5m_A          416 -----QEGSVVAIP  424 (425)
T ss_dssp             -----SCCEEEECC
T ss_pred             -----ceEEEEeec
Confidence                 467788775

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.4e-35  Score=273.06  Aligned_cols=245  Identities=22%  Similarity=0.363  Sum_probs=199.5

Q ss_pred             ceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEE
Q 022716           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (293)
Q Consensus        13 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~   92 (293)
                      .+.+.+|...|.+++|+|+|++|+||+.||+|++||+...    .....+.+|...|.+++|+|++ ..|+||+.|++|+
T Consensus       423 ~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~----~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~D~~i~  497 (694)
T 3dm0_A          423 QRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAG----VSTRRFVGHTKDVLSVAFSLDN-RQIVSASRDRTIK  497 (694)
T ss_dssp             EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT----EEEEEEECCSSCEEEEEECTTS-SCEEEEETTSCEE
T ss_pred             cceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCC----cceeEEeCCCCCEEEEEEeCCC-CEEEEEeCCCEEE
Confidence            3567899999999999999999999999999999999742    2334678999999999999974 6789999999999


Q ss_pred             EEeCCCCeeeeee----eecCceEEEEEcCCC--CEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEE
Q 022716           93 LWDARSGKCSQQA----ELSGENINITYKPDG--THIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFL  166 (293)
Q Consensus        93 vwd~~~~~~~~~~----~~~~~~~~~~~~~~~--~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  166 (293)
                      +||..........    .+...+.+++|+|++  ..+++++.|++|++||+++.+....                    +
T Consensus       498 iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~--------------------~  557 (694)
T 3dm0_A          498 LWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRST--------------------L  557 (694)
T ss_dssp             EECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEE--------------------E
T ss_pred             EEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEE--------------------E
Confidence            9998655332221    123457789999987  5799999999999999987554322                    2


Q ss_pred             ecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCE
Q 022716          167 TTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRT  246 (293)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~  246 (293)
                      ..+...+.+++++|++++|++|+.|++|++||+++++++..+.. ...|.+++|+|++.+|++++. +.|++||+.+++.
T Consensus       558 ~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~~~~~-~~i~iwd~~~~~~  635 (694)
T 3dm0_A          558 AGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA-NSVIHALCFSPNRYWLCAATE-HGIKIWDLESKSI  635 (694)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBC-SSCEEEEEECSSSSEEEEEET-TEEEEEETTTTEE
T ss_pred             cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecC-CCcEEEEEEcCCCcEEEEEcC-CCEEEEECCCCCC
Confidence            34567789999999999999999999999999999988877654 468999999999998887765 5599999999887


Q ss_pred             EEEEecC--------------------CCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeeec
Q 022716          247 VHQIPCR--------------------AAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN  292 (293)
Q Consensus       247 ~~~~~~~--------------------~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~~  292 (293)
                      +..+...                    ..+++++|||++++|++|+.|        +++|||++..
T Consensus       636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~D--------g~i~iW~i~~  693 (694)
T 3dm0_A          636 VEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTD--------GVIRVWGIGR  693 (694)
T ss_dssp             EEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETT--------SEEEEEEC--
T ss_pred             hhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCC--------CeEEEEeccC
Confidence            7655321                    125789999999999999988        5888998764

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=1.1e-35  Score=253.25  Aligned_cols=245  Identities=16%  Similarity=0.192  Sum_probs=202.7

Q ss_pred             eecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEE
Q 022716           15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLW   94 (293)
Q Consensus        15 ~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vw   94 (293)
                      .+..|..+|.+++|+|++++|++|+.||.|++||+....  ......+.+|...|.+++|+|+ +.+|++++.|+.|++|
T Consensus         3 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~--~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~~~dg~i~vw   79 (372)
T 1k8k_C            3 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK--WVQVHELKEHNGQVTGVDWAPD-SNRIVTCGTDRNAYVW   79 (372)
T ss_dssp             EEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE--EEEEEEEECCSSCEEEEEEETT-TTEEEEEETTSCEEEE
T ss_pred             eecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc--EEeeeeecCCCCcccEEEEeCC-CCEEEEEcCCCeEEEE
Confidence            355699999999999999999999999999999987431  1133457789999999999996 5789999999999999


Q ss_pred             eCCCCeeeeee---eecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCC
Q 022716           95 DARSGKCSQQA---ELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNA  171 (293)
Q Consensus        95 d~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  171 (293)
                      |+.+++.....   .+...+.+++|+|+++++++++.|+.+++||++.........                .....+..
T Consensus        80 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~----------------~~~~~~~~  143 (372)
T 1k8k_C           80 TLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCK----------------HIKKPIRS  143 (372)
T ss_dssp             EEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEE----------------EECTTCCS
T ss_pred             ECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeee----------------eeecccCC
Confidence            99888754443   245667899999999999999999999999988754211100                01123456


Q ss_pred             CEEEEEECCCCCEEEEecCCCcEEEEeC------------------CCCEEEEEeeccCCCeeEEEEccCCCEEEEecCC
Q 022716          172 GCYCIAIDPMGRYFAVGSADSLVSLWDI------------------SEMLCVRTFTKLEWPVRTISFSHTGDYIASASED  233 (293)
Q Consensus       172 ~~~~~~~~~~~~~l~~gs~d~~i~iwd~------------------~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d  233 (293)
                      .+.+++|+|+++++++|+.|+.|++||+                  ..+..+..+..|..+|.+++|+|++++|++++.|
T Consensus       144 ~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  223 (372)
T 1k8k_C          144 TVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHD  223 (372)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETT
T ss_pred             CeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCC
Confidence            7889999999999999999999999995                  3677888888999999999999999999999999


Q ss_pred             CcEEEEEcCCCCEEEEEec-CCCcceeEECCCCCeEEEEEcCCCCCC
Q 022716          234 LFIDISNVHTGRTVHQIPC-RAAMNSVEWNPKYNLLAYAGDDKNKYQ  279 (293)
Q Consensus       234 ~~i~iw~~~~~~~~~~~~~-~~~i~~~~~sp~~~~la~~~~d~~~~~  279 (293)
                      +.|++||+.+++.+..+.. ..+|.+++|+|++.+|+++ .|+.+++
T Consensus       224 ~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i  269 (372)
T 1k8k_C          224 STVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVL  269 (372)
T ss_dssp             TEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEE
T ss_pred             CEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEE
Confidence            9999999999998887764 4589999999999988877 6654433

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=3.5e-35  Score=248.15  Aligned_cols=226  Identities=21%  Similarity=0.318  Sum_probs=195.1

Q ss_pred             ceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEE
Q 022716           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (293)
Q Consensus        13 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~   92 (293)
                      ...+..|...|.+++|+|++++|++|+.|+.|++|++............+.+|...|.++.|+++  ..+++++.|+.|+
T Consensus        90 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~l~s~s~d~~i~  167 (340)
T 1got_B           90 VHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD--NQIVTSSGDTTCA  167 (340)
T ss_dssp             EEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEET--TEEEEEETTSCEE
T ss_pred             ceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCC--CcEEEEECCCcEE
Confidence            45567899999999999999999999999999999997543222334567899999999999875  3588999999999


Q ss_pred             EEeCCCCeeeeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeec-ccceeeeeEEecCCCEEEEecCC
Q 022716           93 LWDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTGN  170 (293)
Q Consensus        93 vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~  170 (293)
                      +||+.++++...+. +.+.+.+++|+|+++++++|+.|+++++||+++........ +...+..+.|+|.+..+...+.+
T Consensus       168 ~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d  247 (340)
T 1got_B          168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDD  247 (340)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCC
Confidence            99999998877665 45568899999999999999999999999999887666543 55678999999988766544322


Q ss_pred             -----------------------CCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEE
Q 022716          171 -----------------------AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYI  227 (293)
Q Consensus       171 -----------------------~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l  227 (293)
                                             ..+.+++|+|++++|++|+.|+.|++||+.++..+..+.+|..+|.+++|+|+|++|
T Consensus       248 ~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l  327 (340)
T 1got_B          248 ATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAV  327 (340)
T ss_dssp             SCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCE
T ss_pred             CcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEE
Confidence                                   247889999999999999999999999999999899999999999999999999999


Q ss_pred             EEecCCCcEEEEE
Q 022716          228 ASASEDLFIDISN  240 (293)
Q Consensus       228 ~s~s~d~~i~iw~  240 (293)
                      ++|+.|+.|+|||
T Consensus       328 ~s~s~D~~i~iWd  340 (340)
T 1got_B          328 ATGSWDSFLKIWN  340 (340)
T ss_dssp             EEEETTSCEEEEC
T ss_pred             EEEcCCccEEecC
Confidence            9999999999996

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-36  Score=264.90  Aligned_cols=246  Identities=13%  Similarity=0.203  Sum_probs=193.0

Q ss_pred             cceee-cCccccEEEEEECC-CCCeEEEEeCCCcEEEeecCC---CCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEe
Q 022716           12 HSREY-TGHKKKVHSVAWNC-TGTKLASGSVDQTARVWHIEP---HGHGKVKDIELRGHADSVDQLCWDPKHADLIATAS   86 (293)
Q Consensus        12 ~~~~~-~~h~~~v~~l~~s~-~~~~l~s~~~dg~v~iw~~~~---~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~   86 (293)
                      ....+ .+|.+.|++++|+| ++++|++|+.||+|++||+..   ..... ....+ +|...|.+++|+|+ +.+|++++
T Consensus        54 ~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~-~h~~~v~~~~~~~~-~~~l~s~s  130 (437)
T 3gre_A           54 LIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYS-SSLTY-DCSSTVTQITMIPN-FDAFAVSS  130 (437)
T ss_dssp             EEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCS-CSEEE-ECSSCEEEEEECTT-SSEEEEEE
T ss_pred             EEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccc-eeeec-cCCCCEEEEEEeCC-CCEEEEEe
Confidence            34556 88999999999999 999999999999999999864   21111 11222 58999999999986 57899999


Q ss_pred             CCCeEEEEeCC---CCeeeeeee-------------ecCceEEEE--EcCCCCEEEEEeCCCeEEEEEccccceeeeecc
Q 022716           87 GDKTVRLWDAR---SGKCSQQAE-------------LSGENINIT--YKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF  148 (293)
Q Consensus        87 ~d~~i~vwd~~---~~~~~~~~~-------------~~~~~~~~~--~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~  148 (293)
                      .|+.|++||+.   .++......             ....+.++.  ++|++..+++++.|+.|++||+++.++......
T Consensus       131 ~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  210 (437)
T 3gre_A          131 KDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIEN  210 (437)
T ss_dssp             TTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             CCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEcc
Confidence            99999999984   444333221             122344454  568899999999999999999988665443221


Q ss_pred             cceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEee-ccCCCeeEEEEc----cC
Q 022716          149 GYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT-KLEWPVRTISFS----HT  223 (293)
Q Consensus       149 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~-~~~~~v~~l~~s----p~  223 (293)
                                        ..+...+.+++|+|++++|++|+.||.|++||++++.++.++. .|..+|.+++|+    |+
T Consensus       211 ------------------~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~  272 (437)
T 3gre_A          211 ------------------SPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKN  272 (437)
T ss_dssp             ------------------CGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTT
T ss_pred             ------------------CCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCC
Confidence                              0134578899999999999999999999999999999988876 777899999555    56


Q ss_pred             CCEEEEecCCCcEEEEEcCCCCEEEEEe---------------------------cCCCcceeEECCCCCeEEEEEcCCC
Q 022716          224 GDYIASASEDLFIDISNVHTGRTVHQIP---------------------------CRAAMNSVEWNPKYNLLAYAGDDKN  276 (293)
Q Consensus       224 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~---------------------------~~~~i~~~~~sp~~~~la~~~~d~~  276 (293)
                      +++|++|+.|+.|++||+.+++.+..+.                           +...|.+++|+ ++++|++|+.|+.
T Consensus       273 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~  351 (437)
T 3gre_A          273 SVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSS  351 (437)
T ss_dssp             EEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTE
T ss_pred             ccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCe
Confidence            8899999999999999999998777665                           23357888998 6789999998854


Q ss_pred             CCC
Q 022716          277 KYQ  279 (293)
Q Consensus       277 ~~~  279 (293)
                      +++
T Consensus       352 i~~  354 (437)
T 3gre_A          352 IVM  354 (437)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            433

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.6e-35  Score=254.68  Aligned_cols=259  Identities=15%  Similarity=0.184  Sum_probs=207.2

Q ss_pred             CccccEEEEEECCCCC-eEEEEeCCCcEEEeec----CCCCCC--ceeEEEeeC----------CcCCeeEEEEcCCCCC
Q 022716           18 GHKKKVHSVAWNCTGT-KLASGSVDQTARVWHI----EPHGHG--KVKDIELRG----------HADSVDQLCWDPKHAD   80 (293)
Q Consensus        18 ~h~~~v~~l~~s~~~~-~l~s~~~dg~v~iw~~----~~~~~~--~~~~~~~~~----------h~~~i~~~~~~~~~~~   80 (293)
                      .|.++|.+++|+|+|+ +|++|+.||.|++|++    ......  ......+..          |...|.+++|+|+ +.
T Consensus        43 ~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~  121 (425)
T 1r5m_A           43 VKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHD-GN  121 (425)
T ss_dssp             EECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTT-SS
T ss_pred             eccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCC-CC
Confidence            4558999999999999 9999999999999999    543200  001112222          6789999999996 57


Q ss_pred             EEEEEeCCCeEEEEeCCCCeeeeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccce--------
Q 022716           81 LIATASGDKTVRLWDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYE--------  151 (293)
Q Consensus        81 ~l~s~~~d~~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~--------  151 (293)
                      +|++++.|+.|++|| .+++....+. +...+.+++|+|+++++++++.|+.+++||+++............        
T Consensus       122 ~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  200 (425)
T 1r5m_A          122 SIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAE  200 (425)
T ss_dssp             EEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC----------
T ss_pred             EEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeec
Confidence            899999999999999 4555555554 456788999999999999999999999999988776665543222        


Q ss_pred             --------eeeeEEecCCCEEE--------------------EecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCE
Q 022716          152 --------VNEIAWNMTGEMFF--------------------LTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEML  203 (293)
Q Consensus       152 --------~~~v~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~  203 (293)
                              +..+.|.+.+..+.                    +..+...+.+++++|++++|++++.|+.|++||+++++
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~  280 (425)
T 1r5m_A          201 NHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGN  280 (425)
T ss_dssp             -----CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBS
T ss_pred             cccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCc
Confidence                    66777776644322                    22345678999999999999999999999999999888


Q ss_pred             EEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEec-CCCcceeEECCCCCeEEEEEcCCCCCC
Q 022716          204 CVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPC-RAAMNSVEWNPKYNLLAYAGDDKNKYQ  279 (293)
Q Consensus       204 ~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~-~~~i~~~~~sp~~~~la~~~~d~~~~~  279 (293)
                      .+..+..|..+|.+++|+|++ ++++++.|+.|++||+.+++.+..+.. ..++.+++|+|++++|++++.|+.+++
T Consensus       281 ~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i  356 (425)
T 1r5m_A          281 SQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNV  356 (425)
T ss_dssp             CSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             cceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEE
Confidence            888888899999999999999 999999999999999999988877654 668999999999999999998854433

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=5.6e-35  Score=245.06  Aligned_cols=222  Identities=23%  Similarity=0.355  Sum_probs=194.2

Q ss_pred             eecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEE
Q 022716           15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLW   94 (293)
Q Consensus        15 ~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vw   94 (293)
                      .+.||...|.+++|++++..+++|+.|++|++||+...    .....+..|...+.+++|+|++ .+|++++.|+.|++|
T Consensus        75 ~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~----~~~~~~~~~~~~~~~~~~spdg-~~l~~g~~dg~v~i~  149 (321)
T 3ow8_A           75 SLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENG----KQIKSIDAGPVDAWTLAFSPDS-QYLATGTHVGKVNIF  149 (321)
T ss_dssp             EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT----EEEEEEECCTTCCCCEEECTTS-SEEEEECTTSEEEEE
T ss_pred             eeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCC----CEEEEEeCCCccEEEEEECCCC-CEEEEEcCCCcEEEE
Confidence            47899999999999999999999999999999999753    2233466788889999999974 689999999999999


Q ss_pred             eCCCCeeeeeeeec-CceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeec-ccceeeeeEEecCCCEEEEecC---
Q 022716           95 DARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTG---  169 (293)
Q Consensus        95 d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~---  169 (293)
                      |+++++....+..+ ..+.+++|+|++++|++++.|+.|++||+++.+.+.... +...+..+.|+|++..+...+.   
T Consensus       150 ~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~  229 (321)
T 3ow8_A          150 GVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGY  229 (321)
T ss_dssp             ETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSC
T ss_pred             EcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCe
Confidence            99998877666544 456789999999999999999999999999888776654 4567889999998876654433   


Q ss_pred             ------------------CCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEec
Q 022716          170 ------------------NAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASAS  231 (293)
Q Consensus       170 ------------------~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s  231 (293)
                                        ...+.+++|+|++++|++|+.|++|++||+++++++.++.+|...|.+++|+|++++|++++
T Consensus       230 i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~  309 (321)
T 3ow8_A          230 IKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVG  309 (321)
T ss_dssp             EEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             EEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEe
Confidence                              34578999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEEEEc
Q 022716          232 EDLFIDISNV  241 (293)
Q Consensus       232 ~d~~i~iw~~  241 (293)
                      .|+.|++||.
T Consensus       310 ~d~~i~vwd~  319 (321)
T 3ow8_A          310 DDQEIHIYDC  319 (321)
T ss_dssp             TTCCEEEEEC
T ss_pred             CCCeEEEEeC
Confidence            9999999996

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=5.6e-36  Score=261.33  Aligned_cols=251  Identities=14%  Similarity=0.230  Sum_probs=193.1

Q ss_pred             CccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCC-------CceeEEEeeCCc------------CCeeEEEEcCCC
Q 022716           18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGH-------GKVKDIELRGHA------------DSVDQLCWDPKH   78 (293)
Q Consensus        18 ~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~-------~~~~~~~~~~h~------------~~i~~~~~~~~~   78 (293)
                      .|.+.|++++|+|+|++||+|+.||.|++|++.....       .......+.+|.            ..|.+++|+|++
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~  105 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK  105 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence            5689999999999999999999999999999975321       111234577898            889999999975


Q ss_pred             C-CEEEEEeCCCeEEEEeCCCCeeee---------------------------------------e--eeecCceEEEEE
Q 022716           79 A-DLIATASGDKTVRLWDARSGKCSQ---------------------------------------Q--AELSGENINITY  116 (293)
Q Consensus        79 ~-~~l~s~~~d~~i~vwd~~~~~~~~---------------------------------------~--~~~~~~~~~~~~  116 (293)
                      . ..|++++.|+.|++||+.++....                                       .  ..+...+.+++|
T Consensus       106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  185 (447)
T 3dw8_B          106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI  185 (447)
T ss_dssp             SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred             CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence            3 588999999999999987643310                                       1  123456778999


Q ss_pred             cCCCCEEEEEeCCCeEEEEEccccc-eeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCC-CEEEEecCCCcE
Q 022716          117 KPDGTHIAVGNRDDELTILDVRKFK-PIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMG-RYFAVGSADSLV  194 (293)
Q Consensus       117 ~~~~~~l~~~~~d~~i~l~d~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~gs~d~~i  194 (293)
                      +|++++|+++ .|+.|++||++... ........         +    ..+..+...+.+++|+|++ ++|++|+.||.|
T Consensus       186 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~---------~----~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i  251 (447)
T 3dw8_B          186 NSDYETYLSA-DDLRINLWHLEITDRSFNIVDIK---------P----ANMEELTEVITAAEFHPNSCNTFVYSSSKGTI  251 (447)
T ss_dssp             CTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECC---------C----SSGGGCCCCEEEEEECSSCTTEEEEEETTSCE
T ss_pred             cCCCCEEEEe-CCCeEEEEECCCCCceeeeeecc---------c----ccccccCcceEEEEECCCCCcEEEEEeCCCeE
Confidence            9999999998 79999999998422 22211000         0    0022456678999999998 999999999999


Q ss_pred             EEEeCCCCEE----EEEeeccCC------------CeeEEEEccCCCEEEEecCCCcEEEEEcCC-CCEEEEEecCCCcc
Q 022716          195 SLWDISEMLC----VRTFTKLEW------------PVRTISFSHTGDYIASASEDLFIDISNVHT-GRTVHQIPCRAAMN  257 (293)
Q Consensus       195 ~iwd~~~~~~----~~~~~~~~~------------~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~-~~~~~~~~~~~~i~  257 (293)
                      ++||++++..    +..+..|..            +|.+++|+|+|++|++++. +.|++||+.+ ++.+..+..+..+.
T Consensus       252 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~  330 (447)
T 3dw8_B          252 RLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLR  330 (447)
T ss_dssp             EEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGT
T ss_pred             EEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccc
Confidence            9999988765    567777765            8999999999999999999 9999999987 77666665544433


Q ss_pred             ----------------eeEECCCCCeEEEEEcCCCCCCCCcc
Q 022716          258 ----------------SVEWNPKYNLLAYAGDDKNKYQADEG  283 (293)
Q Consensus       258 ----------------~~~~sp~~~~la~~~~d~~~~~~~~~  283 (293)
                                      .++|+|++++|++|+.|+.+++|+-.
T Consensus       331 ~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~  372 (447)
T 3dw8_B          331 SKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRN  372 (447)
T ss_dssp             TTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETT
T ss_pred             ccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcC
Confidence                            39999999999999998655555443

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.4e-35  Score=256.90  Aligned_cols=261  Identities=12%  Similarity=0.180  Sum_probs=212.0

Q ss_pred             cCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeC
Q 022716           17 TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDA   96 (293)
Q Consensus        17 ~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~   96 (293)
                      .+| ..+....|+|++++|++|+.||.|++||+...    .....+.+|...|.+++|+|+ +.+|++++.|+.|++||+
T Consensus        95 ~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~h~~~v~~~~~~~~-~~~l~s~s~d~~i~iwd~  168 (420)
T 3vl1_A           95 KRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFN----LQREIDQAHVSEITKLKFFPS-GEALISSSQDMQLKIWSV  168 (420)
T ss_dssp             CSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSC----EEEEETTSSSSCEEEEEECTT-SSEEEEEETTSEEEEEET
T ss_pred             ecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCc----ceeeecccccCccEEEEECCC-CCEEEEEeCCCeEEEEeC
Confidence            344 45666688999999999999999999998742    222345689999999999997 468999999999999999


Q ss_pred             CCCeeeeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeec----ccceeeeeEEecCCCEEEEecCCC
Q 022716           97 RSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK----FGYEVNEIAWNMTGEMFFLTTGNA  171 (293)
Q Consensus        97 ~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~~~~~  171 (293)
                      .++++...+. +...+.+++|+|+++.|++++.|+++++||+++.+......    ....+..+.|.+.........+..
T Consensus       169 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  248 (420)
T 3vl1_A          169 KDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTS  248 (420)
T ss_dssp             TTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCC
T ss_pred             CCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccC
Confidence            9988777665 45667889999999999999999999999999887766654    334567777766655444444556


Q ss_pred             CEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEee-ccCCCeeEEEEccCCC-EEEEecCCCcEEEEEcCCCCE-EE
Q 022716          172 GCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT-KLEWPVRTISFSHTGD-YIASASEDLFIDISNVHTGRT-VH  248 (293)
Q Consensus       172 ~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~-~~~~~v~~l~~sp~~~-~l~s~s~d~~i~iw~~~~~~~-~~  248 (293)
                      .+.+++|+|++++|++|+.||.|++||++++..+..+. .|..+|.+++|+|+++ +|++|+.|+.|++||+.+++. +.
T Consensus       249 ~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~  328 (420)
T 3vl1_A          249 KKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVG  328 (420)
T ss_dssp             CCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSE
T ss_pred             cccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchh
Confidence            77889999999999999999999999999887776664 4778999999999999 999999999999999998754 44


Q ss_pred             EEe--cCCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeeec
Q 022716          249 QIP--CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN  292 (293)
Q Consensus       249 ~~~--~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~~  292 (293)
                      .+.  +...+.++.| |++++|++++.|        +.+|||+++.
T Consensus       329 ~~~~~~~~~v~~~~~-~~~~~l~s~~~d--------~~v~iw~~~~  365 (420)
T 3vl1_A          329 EFLINEGTPINNVYF-AAGALFVSSGFD--------TSIKLDIISD  365 (420)
T ss_dssp             EEEESTTSCEEEEEE-ETTEEEEEETTT--------EEEEEEEECC
T ss_pred             hhhccCCCCceEEEe-CCCCEEEEecCC--------ccEEEEeccC
Confidence            443  4556777755 568899999987        5777887653

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=2.6e-35  Score=248.24  Aligned_cols=255  Identities=15%  Similarity=0.097  Sum_probs=211.4

Q ss_pred             ecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCC-EEEEEeCCCeEEEE
Q 022716           16 YTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHAD-LIATASGDKTVRLW   94 (293)
Q Consensus        16 ~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~-~l~s~~~d~~i~vw   94 (293)
                      ..+|.+.|.+++|+|++++|++|+.||.|++|++..... ......+.+|...|.+++|+|+ +. +|++++.|+.|++|
T Consensus         7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~~w   84 (342)
T 1yfq_A            7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAK-NVDLLQSLRYKHPLLCCNFIDN-TDLQIYVGTVQGEILKV   84 (342)
T ss_dssp             SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTT-EEEEEEEEECSSCEEEEEEEES-SSEEEEEEETTSCEEEE
T ss_pred             ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCc-cccceeeeecCCceEEEEECCC-CCcEEEEEcCCCeEEEE
Confidence            458999999999999999999999999999999975421 1223345689999999999997 57 89999999999999


Q ss_pred             eC-CCCeeeeeee--ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccc---------cceeeeecccceeeeeEEecCCC
Q 022716           95 DA-RSGKCSQQAE--LSGENINITYKPDGTHIAVGNRDDELTILDVRK---------FKPIHRRKFGYEVNEIAWNMTGE  162 (293)
Q Consensus        95 d~-~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~---------~~~~~~~~~~~~~~~v~~~~~~~  162 (293)
                      |+ .+++......  +...+.+++|+| +..+++++.|+.+++||+++         .++.....+...+..+.|++.+ 
T Consensus        85 d~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-  162 (342)
T 1yfq_A           85 DLIGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR-  162 (342)
T ss_dssp             CSSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE-
T ss_pred             EeccCCceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCc-
Confidence            99 8876644434  556778999999 99999999999999999987         6666666666677777776543 


Q ss_pred             EE-----------------------EEecCCCCEEEEEECC-CCCEEEEecCCCcEEEEeCCCC------EEEEEeeccC
Q 022716          163 MF-----------------------FLTTGNAGCYCIAIDP-MGRYFAVGSADSLVSLWDISEM------LCVRTFTKLE  212 (293)
Q Consensus       163 ~~-----------------------~~~~~~~~~~~~~~~~-~~~~l~~gs~d~~i~iwd~~~~------~~~~~~~~~~  212 (293)
                      .+                       ....+...+.+++++| +++++++++.||.|++|+++..      .....+..|.
T Consensus       163 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~  242 (342)
T 1yfq_A          163 LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHR  242 (342)
T ss_dssp             EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCC
T ss_pred             EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeeccc
Confidence            11                       1112334678999999 9999999999999999998765      5566777775


Q ss_pred             C---------CeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEec--CCCcceeEECCCCCeEEEEEcCCC
Q 022716          213 W---------PVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPC--RAAMNSVEWNPKYNLLAYAGDDKN  276 (293)
Q Consensus       213 ~---------~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~--~~~i~~~~~sp~~~~la~~~~d~~  276 (293)
                      .         +|.+++|+|++++|++++.|+.|++||+.+++.+..+..  ..+|.+++  |++++|++++.|+.
T Consensus       243 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~  315 (342)
T 1yfq_A          243 LNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDT  315 (342)
T ss_dssp             CCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred             ccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCc
Confidence            5         999999999999999999999999999999998887764  56799999  99999999999987

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=3e-35  Score=254.75  Aligned_cols=225  Identities=23%  Similarity=0.393  Sum_probs=190.3

Q ss_pred             cceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (293)
Q Consensus        12 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i   91 (293)
                      ..+.+.+|.+.|.+++|+|++++|++|+.||+|++||+....    ....+.+|...|.+++|+|+ +..|++|+.|+.|
T Consensus       142 ~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~----~~~~~~~h~~~V~~v~~~p~-~~~l~s~s~D~~i  216 (410)
T 1vyh_C          142 FERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFE----CIRTMHGHDHNVSSVSIMPN-GDHIVSASRDKTI  216 (410)
T ss_dssp             CCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSC----EEECCCCCSSCEEEEEECSS-SSEEEEEETTSEE
T ss_pred             EEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc----eeEEEcCCCCCEEEEEEeCC-CCEEEEEeCCCeE
Confidence            346788999999999999999999999999999999986421    23356789999999999997 4689999999999


Q ss_pred             EEEeCCCCeeeeeeeec-CceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeee-cccceeeeeEEecC---------
Q 022716           92 RLWDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRR-KFGYEVNEIAWNMT---------  160 (293)
Q Consensus        92 ~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~-~~~~~~~~v~~~~~---------  160 (293)
                      ++||++++.+...+..+ ..+..+.++|+++++++++.|+++++||+++....... .+...+..+.|+|.         
T Consensus       217 ~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~  296 (410)
T 1vyh_C          217 KMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEA  296 (410)
T ss_dssp             EEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGC
T ss_pred             EEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhh
Confidence            99999999887776644 45678899999999999999999999999887665443 24456677777664         


Q ss_pred             -----------CCEEE---------------------EecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEe
Q 022716          161 -----------GEMFF---------------------LTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF  208 (293)
Q Consensus       161 -----------~~~~~---------------------~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~  208 (293)
                                 +..+.                     +..+...+.+++|+|++++|++|+.|++|++||+++++++..+
T Consensus       297 ~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~  376 (410)
T 1vyh_C          297 TGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL  376 (410)
T ss_dssp             CSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEE
T ss_pred             ccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEE
Confidence                       22222                     2234456889999999999999999999999999999888999


Q ss_pred             eccCCCeeEEEEccCCCEEEEecCCCcEEEEEc
Q 022716          209 TKLEWPVRTISFSHTGDYIASASEDLFIDISNV  241 (293)
Q Consensus       209 ~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~  241 (293)
                      .+|...|.+++|+|++++|++|+.|+.|++|++
T Consensus       377 ~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~  409 (410)
T 1vyh_C          377 NAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC  409 (410)
T ss_dssp             ECCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred             cCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence            999999999999999999999999999999986

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=6.3e-37  Score=261.83  Aligned_cols=240  Identities=15%  Similarity=0.199  Sum_probs=187.5

Q ss_pred             ecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEe
Q 022716           16 YTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWD   95 (293)
Q Consensus        16 ~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd   95 (293)
                      +..|.++|.+++|+|+|++|++|+.||.|++|++....  ......+.+|...|.+++|+|++ .+|++++.|+.|++||
T Consensus         7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~--~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~d~~v~vwd   83 (377)
T 3dwl_C            7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNG--WKHARTFSDHDKIVTCVDWAPKS-NRIVTCSQDRNAYVYE   83 (377)
T ss_dssp             EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTE--EEECCCBCCCSSCEEEEEECTTT-CCEEEEETTSSEEEC-
T ss_pred             EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCc--eEEEEEEecCCceEEEEEEeCCC-CEEEEEeCCCeEEEEE
Confidence            44567899999999999999999999999999997421  02223567899999999999974 6889999999999999


Q ss_pred             CCCCe---eeee-eeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEec-CC
Q 022716           96 ARSGK---CSQQ-AELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTT-GN  170 (293)
Q Consensus        96 ~~~~~---~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~  170 (293)
                      +.++.   .... ..+...+.+++|+|+++.|++++.|+.+++||++........                 ..+.. +.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-----------------~~~~~~h~  146 (377)
T 3dwl_C           84 KRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVS-----------------KHLKRPLR  146 (377)
T ss_dssp             -----CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCC-----------------EEECSSCC
T ss_pred             cCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceee-----------------eEeecccC
Confidence            98876   2222 335567889999999999999999999999999875421100                 01122 56


Q ss_pred             CCEEEEEECCCCCEEEEecCCCcEEEEeCC------------------CCEEEEEeeccCCCeeEEEEccCCCEEEEecC
Q 022716          171 AGCYCIAIDPMGRYFAVGSADSLVSLWDIS------------------EMLCVRTFTKLEWPVRTISFSHTGDYIASASE  232 (293)
Q Consensus       171 ~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~------------------~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~  232 (293)
                      ..+.+++|+|++++|++|+.|+.|++||++                  .+.++..+ .|..+|.+++|+|++++|++++.
T Consensus       147 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~  225 (377)
T 3dwl_C          147 STILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGH  225 (377)
T ss_dssp             SCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEET
T ss_pred             CCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeC
Confidence            778999999999999999999999999984                  34566666 89999999999999999999999


Q ss_pred             CCcEEEEEcCCCCE----EEEEe-cCCCcceeEECCCCCeEEEEEcCCC
Q 022716          233 DLFIDISNVHTGRT----VHQIP-CRAAMNSVEWNPKYNLLAYAGDDKN  276 (293)
Q Consensus       233 d~~i~iw~~~~~~~----~~~~~-~~~~i~~~~~sp~~~~la~~~~d~~  276 (293)
                      |+.|++||+.+++.    +..+. +..+|.+++|+|++.+|+++++++.
T Consensus       226 d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~  274 (377)
T 3dwl_C          226 DSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSP  274 (377)
T ss_dssp             TTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSE
T ss_pred             CCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcE
Confidence            99999999999876    44443 4567999999999999999986653

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-35  Score=263.73  Aligned_cols=249  Identities=11%  Similarity=0.092  Sum_probs=192.6

Q ss_pred             ecCccccEEEEEECCC------CCeEEEEeCCCcEEEeecCCCCCCc-------eeEEEeeCCcCCeeEEEEcCCCCCEE
Q 022716           16 YTGHKKKVHSVAWNCT------GTKLASGSVDQTARVWHIEPHGHGK-------VKDIELRGHADSVDQLCWDPKHADLI   82 (293)
Q Consensus        16 ~~~h~~~v~~l~~s~~------~~~l~s~~~dg~v~iw~~~~~~~~~-------~~~~~~~~h~~~i~~~~~~~~~~~~l   82 (293)
                      +.+|.+.|.+++|+|+      +.+||+|+.||+|++||+.......       .....+.+|...|.+++|++.  ..|
T Consensus       203 l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~--~~l  280 (524)
T 2j04_B          203 IVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP--TTV  280 (524)
T ss_dssp             EEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS--SEE
T ss_pred             EEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC--CeE
Confidence            5577889999999997      5799999999999999997542110       012356789999999999974  479


Q ss_pred             EEEeCCCeEEEEeCCCCeee-eeee-ecCceEEE--EEcCCC-CEEEEEeCCCeEEEEEccccceeeeecccceeeeeEE
Q 022716           83 ATASGDKTVRLWDARSGKCS-QQAE-LSGENINI--TYKPDG-THIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAW  157 (293)
Q Consensus        83 ~s~~~d~~i~vwd~~~~~~~-~~~~-~~~~~~~~--~~~~~~-~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~  157 (293)
                      ++|+.||+|++||++++... ..+. +...+.++  +|+|++ .+|++++.|+++++||+++.+........        
T Consensus       281 asgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~--------  352 (524)
T 2j04_B          281 VCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSR--------  352 (524)
T ss_dssp             EEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEE--------
T ss_pred             EEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccc--------
Confidence            99999999999999876432 3333 34567777  567887 89999999999999999876543321100        


Q ss_pred             ecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEE
Q 022716          158 NMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFID  237 (293)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~  237 (293)
                                .....+.+++|+|++..+++++.|++|++||++++.++.++.+|..+|.+|+|+|+|++|++|+.|++|+
T Consensus       353 ----------~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~  422 (524)
T 2j04_B          353 ----------FRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLI  422 (524)
T ss_dssp             ----------CSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEE
T ss_pred             ----------cccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEE
Confidence                      0112356788999999999999999999999999887778889999999999999999999999999999


Q ss_pred             EEEcCCC-----C---------EE------------------------------EEE-ecCCCcceeEECCCCC---eEE
Q 022716          238 ISNVHTG-----R---------TV------------------------------HQI-PCRAAMNSVEWNPKYN---LLA  269 (293)
Q Consensus       238 iw~~~~~-----~---------~~------------------------------~~~-~~~~~i~~~~~sp~~~---~la  269 (293)
                      +||...+     +         .+                              ..+ .+..+|++|+|||+++   .+|
T Consensus       423 lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lA  502 (524)
T 2j04_B          423 ITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYA  502 (524)
T ss_dssp             CCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEE
T ss_pred             EEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHH
Confidence            9985321     0         01                              001 1345789999999965   888


Q ss_pred             EEEcCCCCCCCCcceEEEEeeec
Q 022716          270 YAGDDKNKYQADEGVFRIYGFEN  292 (293)
Q Consensus       270 ~~~~d~~~~~~~~~~~~~~~~~~  292 (293)
                      +|+.|        |++|||+++-
T Consensus       503 sg~~~--------g~vrlw~l~~  517 (524)
T 2j04_B          503 FSNSA--------GLLTLEYLSL  517 (524)
T ss_dssp             EECTT--------SEEEEEECSC
T ss_pred             hhccC--------ceEEEEEccc
Confidence            88876        7899998863

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=4e-35  Score=254.05  Aligned_cols=247  Identities=17%  Similarity=0.306  Sum_probs=197.3

Q ss_pred             ceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEE
Q 022716           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (293)
Q Consensus        13 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~   92 (293)
                      .+.+.+|...|.+++|+|++++|++|+.||.|++||+.....    ...+.+|...|.+++|+|+ +.+|++++.|+.|+
T Consensus       132 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~----~~~~~~h~~~v~~~~~~~~-~~~l~s~~~d~~v~  206 (420)
T 3vl1_A          132 REIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN----PRTLIGHRATVTDIAIIDR-GRNVLSASLDGTIR  206 (420)
T ss_dssp             EEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCC----CEEEECCSSCEEEEEEETT-TTEEEEEETTSCEE
T ss_pred             eeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcC----ceEEcCCCCcEEEEEEcCC-CCEEEEEcCCCcEE
Confidence            344579999999999999999999999999999999975321    2356789999999999997 46899999999999


Q ss_pred             EEeCCCCeeeeeeeec-------------------------CceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeec
Q 022716           93 LWDARSGKCSQQAELS-------------------------GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK  147 (293)
Q Consensus        93 vwd~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~  147 (293)
                      +||++++++...+..+                         ..+.+++|+|+++++++++.|+.+++||+++........
T Consensus       207 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  286 (420)
T 3vl1_A          207 LWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLP  286 (420)
T ss_dssp             EEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred             EeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcc
Confidence            9999999877765432                         222334567899999999999999999998765443221


Q ss_pred             ccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCC-EEEEecCCCcEEEEeCCCCEE-EEEeec-cCCCeeEEEEccCC
Q 022716          148 FGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGR-YFAVGSADSLVSLWDISEMLC-VRTFTK-LEWPVRTISFSHTG  224 (293)
Q Consensus       148 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~gs~d~~i~iwd~~~~~~-~~~~~~-~~~~v~~l~~sp~~  224 (293)
                                         ..+...+.+++|+|+++ +|++|+.||.|++||++++.. +..+.. +..++.++. .|++
T Consensus       287 -------------------~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~-~~~~  346 (420)
T 3vl1_A          287 -------------------SKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVY-FAAG  346 (420)
T ss_dssp             -------------------CTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEE-EETT
T ss_pred             -------------------cccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEE-eCCC
Confidence                               12456788999999998 999999999999999987643 556666 567788885 4688


Q ss_pred             CEEEEecCCCcEEEEEcCCCC----------EEEEEecCCCcceeEECCCCC---eEEEEEcCCCCCCCCcceEEEEeee
Q 022716          225 DYIASASEDLFIDISNVHTGR----------TVHQIPCRAAMNSVEWNPKYN---LLAYAGDDKNKYQADEGVFRIYGFE  291 (293)
Q Consensus       225 ~~l~s~s~d~~i~iw~~~~~~----------~~~~~~~~~~i~~~~~sp~~~---~la~~~~d~~~~~~~~~~~~~~~~~  291 (293)
                      ++|++++.|+.|++|++....          ......+...|.+++|+|+++   .++++|.+        +.+++|++|
T Consensus       347 ~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~--------g~~~~~~~~  418 (420)
T 3vl1_A          347 ALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKN--------NFCALYNLS  418 (420)
T ss_dssp             EEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETT--------TEEEEEESC
T ss_pred             CEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCC--------ceEEEEecc
Confidence            999999999999999987632          122334567899999999999   55556544        689999998


Q ss_pred             c
Q 022716          292 N  292 (293)
Q Consensus       292 ~  292 (293)
                      +
T Consensus       419 ~  419 (420)
T 3vl1_A          419 N  419 (420)
T ss_dssp             C
T ss_pred             C
Confidence            7

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=5.1e-35  Score=252.51  Aligned_cols=251  Identities=20%  Similarity=0.322  Sum_probs=200.3

Q ss_pred             ceeecCccccEEEEEECC-CCCeEEEEeCCCcEEEeecCCCCCCc---eeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCC
Q 022716           13 SREYTGHKKKVHSVAWNC-TGTKLASGSVDQTARVWHIEPHGHGK---VKDIELRGHADSVDQLCWDPKHADLIATASGD   88 (293)
Q Consensus        13 ~~~~~~h~~~v~~l~~s~-~~~~l~s~~~dg~v~iw~~~~~~~~~---~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d   88 (293)
                      ...+.+|.+.|.+++|+| ++++|++|+.||+|++|++.......   .....+.+|...|.+++|+|++..+|++++.|
T Consensus        74 ~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~d  153 (402)
T 2aq5_A           74 VPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCD  153 (402)
T ss_dssp             CCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETT
T ss_pred             CceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCC
Confidence            345779999999999999 89999999999999999997642110   12345779999999999999876799999999


Q ss_pred             CeEEEEeCCCCeeeeee--e-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEE
Q 022716           89 KTVRLWDARSGKCSQQA--E-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFF  165 (293)
Q Consensus        89 ~~i~vwd~~~~~~~~~~--~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  165 (293)
                      +.|++||+.++++...+  . +...+.+++|+|++++|++++.|+.+++||+++.+......                  
T Consensus       154 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~------------------  215 (402)
T 2aq5_A          154 NVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKD------------------  215 (402)
T ss_dssp             SCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEE------------------
T ss_pred             CEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeec------------------
Confidence            99999999999887766  2 45667899999999999999999999999998866544321                  


Q ss_pred             EecCCC-CEEEEEECCCCCEEEEe---cCCCcEEEEeCCCCEE-EEEe-eccCCCeeEEEEccCCCEEE-EecCCCcEEE
Q 022716          166 LTTGNA-GCYCIAIDPMGRYFAVG---SADSLVSLWDISEMLC-VRTF-TKLEWPVRTISFSHTGDYIA-SASEDLFIDI  238 (293)
Q Consensus       166 ~~~~~~-~~~~~~~~~~~~~l~~g---s~d~~i~iwd~~~~~~-~~~~-~~~~~~v~~l~~sp~~~~l~-s~s~d~~i~i  238 (293)
                       ..+.. .+.+++|+|++++|++|   +.|+.|++||++++.. +... ..+...+.+++|+|++++|+ +|+.|+.|++
T Consensus       216 -~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i  294 (402)
T 2aq5_A          216 -RPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRY  294 (402)
T ss_dssp             -CSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEE
T ss_pred             -cCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEE
Confidence             11222 25678899999999999   8999999999987543 2222 24667899999999999986 5668999999


Q ss_pred             EEcCCCCE-E---EEEecCCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeeec
Q 022716          239 SNVHTGRT-V---HQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN  292 (293)
Q Consensus       239 w~~~~~~~-~---~~~~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~~  292 (293)
                      |++.+++. +   ..+.+..++.+++|+|++.++++++          +.+|+|+++.
T Consensus       295 ~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s~~----------~~~~~~~l~~  342 (402)
T 2aq5_A          295 FEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVNKC----------EIARFYKLHE  342 (402)
T ss_dssp             EEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGGGT----------EEEEEEEEET
T ss_pred             EEecCCCcceEeecccccCCcccceEEecccccceecc----------eeEEEEEcCC
Confidence            99998873 3   3344557899999999998877532          3678887753

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2e-35  Score=274.07  Aligned_cols=248  Identities=21%  Similarity=0.326  Sum_probs=198.7

Q ss_pred             eeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCC-CCEEEEEeCCCeEE
Q 022716           14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKH-ADLIATASGDKTVR   92 (293)
Q Consensus        14 ~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~-~~~l~s~~~d~~i~   92 (293)
                      ..+.+|.+.|++++|+|+|++|++|+.||.|++||+...  .......+.+|...|.+++|+|.. +.+|++|+.||.|+
T Consensus         3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~--~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~   80 (753)
T 3jro_A            3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGE--THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL   80 (753)
T ss_dssp             -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETT--EEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEE
T ss_pred             eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCC--CCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEE
Confidence            457899999999999999999999999999999998632  122334577999999999998752 57899999999999


Q ss_pred             EEeCCCCe--eeeeee-ecCceEEEEEcCC--CCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEe
Q 022716           93 LWDARSGK--CSQQAE-LSGENINITYKPD--GTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLT  167 (293)
Q Consensus        93 vwd~~~~~--~~~~~~-~~~~~~~~~~~~~--~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  167 (293)
                      +||+.+++  ...... +...+.+++|+|+  ++.+++++.|+.|++||+++......                  ....
T Consensus        81 vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~------------------~~~~  142 (753)
T 3jro_A           81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSP------------------IIID  142 (753)
T ss_dssp             EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCC------------------EEEE
T ss_pred             EEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcce------------------eEee
Confidence            99999886  333333 4566789999999  99999999999999999987532211                  1223


Q ss_pred             cCCCCEEEEEECC-------------CCCEEEEecCCCcEEEEeCCCC----EEEEEeeccCCCeeEEEEccC---CCEE
Q 022716          168 TGNAGCYCIAIDP-------------MGRYFAVGSADSLVSLWDISEM----LCVRTFTKLEWPVRTISFSHT---GDYI  227 (293)
Q Consensus       168 ~~~~~~~~~~~~~-------------~~~~l~~gs~d~~i~iwd~~~~----~~~~~~~~~~~~v~~l~~sp~---~~~l  227 (293)
                      .+...+.+++++|             ++..+++|+.||.|++||++++    .....+.+|..+|.+++|+|+   +++|
T Consensus       143 ~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l  222 (753)
T 3jro_A          143 AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYL  222 (753)
T ss_dssp             CCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEE
T ss_pred             cCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEE
Confidence            4556677888888             5899999999999999998765    566778889999999999999   8999


Q ss_pred             EEecCCCcEEEEEcCCCCEE------EEEecCCCcceeEECCCCCeEEEEEcCCCCCCCC
Q 022716          228 ASASEDLFIDISNVHTGRTV------HQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQAD  281 (293)
Q Consensus       228 ~s~s~d~~i~iw~~~~~~~~------~~~~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~  281 (293)
                      ++|+.|+.|++||+.++...      ....+...|.+++|+|++++|++++.|+.+++|+
T Consensus       223 ~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd  282 (753)
T 3jro_A          223 ASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK  282 (753)
T ss_dssp             EEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCB
T ss_pred             EEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEe
Confidence            99999999999999886421      1123456799999999999999999987655554

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=6.6e-34  Score=265.82  Aligned_cols=258  Identities=17%  Similarity=0.179  Sum_probs=217.6

Q ss_pred             cceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (293)
Q Consensus        12 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i   91 (293)
                      ..+.+.+|.+.|.+++|+|++++|++|+.||.|++||+...    .....+.+|..+|.+++|+|+ +.+|++++.|+.|
T Consensus         5 ~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~----~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i   79 (814)
T 3mkq_A            5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQ----VEVRSIQVTETPVRAGKFIAR-KNWIIVGSDDFRI   79 (814)
T ss_dssp             CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTT----EEEEEEECCSSCEEEEEEEGG-GTEEEEEETTSEE
T ss_pred             cceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCC----ceEEEEecCCCcEEEEEEeCC-CCEEEEEeCCCeE
Confidence            34678899999999999999999999999999999998742    233457789999999999997 4689999999999


Q ss_pred             EEEeCCCCeeeeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEcccc-ceeeee-cccceeeeeEEec-CCCEEEEe
Q 022716           92 RLWDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKF-KPIHRR-KFGYEVNEIAWNM-TGEMFFLT  167 (293)
Q Consensus        92 ~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~-~~~~~~-~~~~~~~~v~~~~-~~~~~~~~  167 (293)
                      ++||+.+++....+. +.+.+.+++|+|+++++++++.|+.+++||+++. ...... .+...+..+.|+| .+..+...
T Consensus        80 ~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~  159 (814)
T 3mkq_A           80 RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASG  159 (814)
T ss_dssp             EEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEE
T ss_pred             EEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEE
Confidence            999999998877766 4566889999999999999999999999999876 333332 3456788899998 55444433


Q ss_pred             cCC----------------------CCEEEEEECC--CCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccC
Q 022716          168 TGN----------------------AGCYCIAIDP--MGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHT  223 (293)
Q Consensus       168 ~~~----------------------~~~~~~~~~~--~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~  223 (293)
                      +.+                      ..+.+++++|  ++.++++|+.||.|++||++++..+..+.+|..+|.+++|+|+
T Consensus       160 ~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~  239 (814)
T 3mkq_A          160 CLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPT  239 (814)
T ss_dssp             ETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSS
T ss_pred             eCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCC
Confidence            221                      4567889999  9999999999999999999999999999999999999999999


Q ss_pred             CCEEEEecCCCcEEEEEcCCCCEEEEEec-CCCcceeEECCCCC--eEEEEEcC
Q 022716          224 GDYIASASEDLFIDISNVHTGRTVHQIPC-RAAMNSVEWNPKYN--LLAYAGDD  274 (293)
Q Consensus       224 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~-~~~i~~~~~sp~~~--~la~~~~d  274 (293)
                      +++|++++.|+.|++||..+++.+..+.. ..++.+++|+|++.  ++++++++
T Consensus       240 ~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  293 (814)
T 3mkq_A          240 LPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDN  293 (814)
T ss_dssp             SSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETT
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCC
Confidence            99999999999999999999998887754 46799999999986  35655543

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=8.2e-35  Score=247.56  Aligned_cols=226  Identities=17%  Similarity=0.161  Sum_probs=179.2

Q ss_pred             ecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEe
Q 022716           16 YTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWD   95 (293)
Q Consensus        16 ~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd   95 (293)
                      ..+|...|.+++|+|++. +++++.||+|++||+..............+|...|.+++|+|+ +.+|++|+.|+.|++||
T Consensus        90 ~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spd-g~~l~sgs~dg~v~iwd  167 (357)
T 4g56_B           90 GVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSD-GTQAVSGGKDFSVKVWD  167 (357)
T ss_dssp             EEECSSCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSS-SSEEEEEETTSCEEEEE
T ss_pred             cCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCC-CCEEEEEeCCCeEEEEE
Confidence            457889999999999975 6678899999999997643333333456689999999999997 46899999999999999


Q ss_pred             CCCCeeeeeeee-cCceEEEEEcCCCC-EEEEEeCCCeEEEEEccccceeeeec---ccceeeeeEEecCCCEEE-Eec-
Q 022716           96 ARSGKCSQQAEL-SGENINITYKPDGT-HIAVGNRDDELTILDVRKFKPIHRRK---FGYEVNEIAWNMTGEMFF-LTT-  168 (293)
Q Consensus        96 ~~~~~~~~~~~~-~~~~~~~~~~~~~~-~l~~~~~d~~i~l~d~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~-~~~-  168 (293)
                      +.++++...+.. ...+.+++|+|++. .+++++.|++|++||+++.++.....   ....+..+.|+|.+..++ ... 
T Consensus       168 ~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~  247 (357)
T 4g56_B          168 LSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDE  247 (357)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEES
T ss_pred             CCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeec
Confidence            999988877664 45677899999875 78899999999999999877655443   344578888988754333 222 


Q ss_pred             --------------------CCCCEEEEEECCCC-CEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEcc-CCCE
Q 022716          169 --------------------GNAGCYCIAIDPMG-RYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSH-TGDY  226 (293)
Q Consensus       169 --------------------~~~~~~~~~~~~~~-~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp-~~~~  226 (293)
                                          +...+.+++|+|++ ++|++|+.|++|+|||+++++.+..+ +|..+|++|+|+| ++++
T Consensus       248 d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~  326 (357)
T 4g56_B          248 TGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSK  326 (357)
T ss_dssp             SSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTE
T ss_pred             ccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCE
Confidence                                23468899999987 67999999999999999999877654 8999999999999 7999


Q ss_pred             EEEecCCCcEEEEEcCCC
Q 022716          227 IASASEDLFIDISNVHTG  244 (293)
Q Consensus       227 l~s~s~d~~i~iw~~~~~  244 (293)
                      |+||+.|+.|++|++.+.
T Consensus       327 l~s~s~Dg~v~iW~~~~~  344 (357)
T 4g56_B          327 FTTVGWDHKVLHHHLPSE  344 (357)
T ss_dssp             EEEEETTSCEEEEECC--
T ss_pred             EEEEcCCCeEEEEECCCC
Confidence            999999999999998654

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=2.2e-33  Score=246.46  Aligned_cols=260  Identities=19%  Similarity=0.297  Sum_probs=207.3

Q ss_pred             ceeecCcccc-EEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716           13 SREYTGHKKK-VHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (293)
Q Consensus        13 ~~~~~~h~~~-v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i   91 (293)
                      ...+.+|... +.++.+  ++++|++|+.||+|++||+...    .....+.+|...|.+++|+|++  .+++|+.|+.|
T Consensus       114 ~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~----~~~~~~~~h~~~V~~l~~~~~~--~l~s~s~dg~i  185 (464)
T 3v7d_B          114 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINK----KFLLQLSGHDGGVWALKYAHGG--ILVSGSTDRTV  185 (464)
T ss_dssp             EEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTT----EEEEEECCCSSCEEEEEECSTT--EEEEEETTSCE
T ss_pred             eEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCC----cEEEEEeCCCcCEEEEEEcCCC--EEEEEeCCCCE
Confidence            3567899877 567766  5679999999999999998753    2334577999999999998864  89999999999


Q ss_pred             EEEeCCCCeeeeeee-ecCceEEEEEc--CCCCEEEEEeCCCeEEEEEccccceeee-----------------------
Q 022716           92 RLWDARSGKCSQQAE-LSGENINITYK--PDGTHIAVGNRDDELTILDVRKFKPIHR-----------------------  145 (293)
Q Consensus        92 ~vwd~~~~~~~~~~~-~~~~~~~~~~~--~~~~~l~~~~~d~~i~l~d~~~~~~~~~-----------------------  145 (293)
                      ++||++++++...+. +...+.++++.  ++++++++++.|+.+++||+++......                       
T Consensus       186 ~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (464)
T 3v7d_B          186 RVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGV  265 (464)
T ss_dssp             EEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEE
T ss_pred             EEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEE
Confidence            999999998877766 45667778887  6788999999999999999987543211                       


Q ss_pred             -ecccceeeee-----------------EEecCCC--EEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEE
Q 022716          146 -RKFGYEVNEI-----------------AWNMTGE--MFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCV  205 (293)
Q Consensus       146 -~~~~~~~~~v-----------------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~  205 (293)
                       ..+...+..+                 .|+....  ...+..+...+.+++++|+++++++|+.||.|++||+++++++
T Consensus       266 ~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~  345 (464)
T 3v7d_B          266 LRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELM  345 (464)
T ss_dssp             ECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEE
T ss_pred             ccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEE
Confidence             0111112222                 2332211  1123345567899999999999999999999999999999999


Q ss_pred             EEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEecCCCcceeEECCCCCeEEEEEcCCCCCCCCcceE
Q 022716          206 RTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVF  285 (293)
Q Consensus       206 ~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~  285 (293)
                      ..+.+|..+|.+++|+  +++|++|+.|+.|++||+.++...........+..++|+|+++++++++ |+        .+
T Consensus       346 ~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg--------~i  414 (464)
T 3v7d_B          346 YTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-EN--------QF  414 (464)
T ss_dssp             EEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-TT--------EE
T ss_pred             EEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-CC--------eE
Confidence            9999999999999997  5899999999999999999988877777777888999999999999998 53        56


Q ss_pred             EEEeee
Q 022716          286 RIYGFE  291 (293)
Q Consensus       286 ~~~~~~  291 (293)
                      +||+++
T Consensus       415 ~iwd~~  420 (464)
T 3v7d_B          415 NIYNLR  420 (464)
T ss_dssp             EEEETT
T ss_pred             EEEECC
Confidence            677665

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=1.1e-34  Score=246.88  Aligned_cols=262  Identities=17%  Similarity=0.278  Sum_probs=203.8

Q ss_pred             cceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (293)
Q Consensus        12 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i   91 (293)
                      ....+.+|...|.+++|+|++++|++++.||.|++||+....  ......+..|...|.+++|+|+ +.+|++++.|+.|
T Consensus        44 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v  120 (372)
T 1k8k_C           44 QVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRT--WKPTLVILRINRAARCVRWAPN-EKKFAVGSGSRVI  120 (372)
T ss_dssp             EEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTE--EEEEEECCCCSSCEEEEEECTT-SSEEEEEETTSSE
T ss_pred             eeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCe--eeeeEEeecCCCceeEEEECCC-CCEEEEEeCCCEE
Confidence            445678999999999999999999999999999999996431  2223345679999999999997 4789999999999


Q ss_pred             EEEeCCCCee---eeee--eecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEe---cCCCE
Q 022716           92 RLWDARSGKC---SQQA--ELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWN---MTGEM  163 (293)
Q Consensus        92 ~vwd~~~~~~---~~~~--~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~---~~~~~  163 (293)
                      ++||++.+..   ....  .+...+.+++|+|+++++++++.|+.+++||++.........      ...|.   +.+..
T Consensus       121 ~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~------~~~~~~~~~~~~~  194 (372)
T 1k8k_C          121 SICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPA------PTPWGSKMPFGEL  194 (372)
T ss_dssp             EEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCC------CBTTBSCCCTTCE
T ss_pred             EEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEccccccccccc------ccccccccchhhh
Confidence            9999987652   2222  135567899999999999999999999999976432110000      00000   01111


Q ss_pred             -EEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcC
Q 022716          164 -FFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVH  242 (293)
Q Consensus       164 -~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~  242 (293)
                       ..+..+...+.+++++|++++|++++.|+.|++||+++++.+..+..|..+|.+++|+|++++|++| .|+.|++|++.
T Consensus       195 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~  273 (372)
T 1k8k_C          195 MFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYD  273 (372)
T ss_dssp             EEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEE
T ss_pred             eEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEcc
Confidence             1222456678999999999999999999999999999998999999999999999999999999888 99999999998


Q ss_pred             C--CCE--------------------------------E------EEE--ecCCCcceeEEC-CCC---CeEEEEEcCCC
Q 022716          243 T--GRT--------------------------------V------HQI--PCRAAMNSVEWN-PKY---NLLAYAGDDKN  276 (293)
Q Consensus       243 ~--~~~--------------------------------~------~~~--~~~~~i~~~~~s-p~~---~~la~~~~d~~  276 (293)
                      +  +..                                .      ..+  .+..+|++++|+ +++   ++|++|+.|  
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~D--  351 (372)
T 1k8k_C          274 SAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMD--  351 (372)
T ss_dssp             TTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETT--
T ss_pred             CcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCC--
Confidence            7  420                                0      111  356689999976 666   999999988  


Q ss_pred             CCCCCcceEEEEeee
Q 022716          277 KYQADEGVFRIYGFE  291 (293)
Q Consensus       277 ~~~~~~~~~~~~~~~  291 (293)
                            +.+|||+++
T Consensus       352 ------g~i~~W~~~  360 (372)
T 1k8k_C          352 ------GGMSIWDVR  360 (372)
T ss_dssp             ------SEEEEEEHH
T ss_pred             ------CceEEEEec
Confidence                  578888775

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.6e-33  Score=243.13  Aligned_cols=238  Identities=21%  Similarity=0.315  Sum_probs=195.1

Q ss_pred             CccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCC
Q 022716           18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDAR   97 (293)
Q Consensus        18 ~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~   97 (293)
                      .|...|.+++|+|++++|++|+.||.|++||+....    ....+.+|...|.++.|++   ..|++++.|+.|++||++
T Consensus       132 ~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~  204 (401)
T 4aez_A          132 DESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQT----KLRTMAGHQARVGCLSWNR---HVLSSGSRSGAIHHHDVR  204 (401)
T ss_dssp             CTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCC----EEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETT
T ss_pred             CCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCe----EEEEecCCCCceEEEEECC---CEEEEEcCCCCEEEEecc
Confidence            488999999999999999999999999999997532    2345678999999999953   589999999999999998


Q ss_pred             C-Ceeeeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEE
Q 022716           98 S-GKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYC  175 (293)
Q Consensus        98 ~-~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  175 (293)
                      . ......+. +.+.+.+++|+|+++++++++.|+.|++||+++..+...                    +..+...+.+
T Consensus       205 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~--------------------~~~~~~~v~~  264 (401)
T 4aez_A          205 IANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFT--------------------KTNHNAAVKA  264 (401)
T ss_dssp             SSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEE--------------------ECCCSSCCCE
T ss_pred             cCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEE--------------------ecCCcceEEE
Confidence            4 34444443 456778899999999999999999999999987654432                    2234556778


Q ss_pred             EEECCCC-CEEEEec--CCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEE--ecCCCcEEEEEcCCCCEEEE-
Q 022716          176 IAIDPMG-RYFAVGS--ADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIAS--ASEDLFIDISNVHTGRTVHQ-  249 (293)
Q Consensus       176 ~~~~~~~-~~l~~gs--~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s--~s~d~~i~iw~~~~~~~~~~-  249 (293)
                      ++++|++ .++++|+  .|+.|++||++++..+..+. +..+|.+++|+|+++++++  |+.|+.|++|+..+++.... 
T Consensus       265 ~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~  343 (401)
T 4aez_A          265 VAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQV  343 (401)
T ss_dssp             EEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEE
T ss_pred             EEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEE
Confidence            9999976 5666654  79999999999998888774 5678999999999999998  55899999999998765443 


Q ss_pred             -E-ecCCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeee
Q 022716          250 -I-PCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE  291 (293)
Q Consensus       250 -~-~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~  291 (293)
                       + .+...|.+++|+|++.+|++++.|+        .++||+++
T Consensus       344 ~~~~h~~~v~~~~~s~dg~~l~s~~~dg--------~i~iw~~~  379 (401)
T 4aez_A          344 DIPAHDTRVLYSALSPDGRILSTAASDE--------NLKFWRVY  379 (401)
T ss_dssp             EEECCSSCCCEEEECTTSSEEEEECTTS--------EEEEEECC
T ss_pred             EecCCCCCEEEEEECCCCCEEEEEeCCC--------cEEEEECC
Confidence             3 3567899999999999999999884        66777665

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=1.2e-33  Score=237.05  Aligned_cols=254  Identities=16%  Similarity=0.195  Sum_probs=205.4

Q ss_pred             ccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCC
Q 022716           19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS   98 (293)
Q Consensus        19 h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~   98 (293)
                      |.++|.+++|+|||++++++..++.+..|....    ........+|...|.+++|+|+ +.+|++++ |+.|++||+.+
T Consensus         8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~----~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~~-dg~i~iw~~~~   81 (337)
T 1gxr_A            8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPR----HARQINTLNHGEVVCAVTISNP-TRHVYTGG-KGCVKVWDISH   81 (337)
T ss_dssp             EEEECCEEEECSSSCEEECCCCTTSSSSTTCCS----EEEEEEEECCSSCCCEEEECSS-SSEEEEEC-BSEEEEEETTS
T ss_pred             cCCceeEEEECCCCCEEEeecCCCcEeccccCC----ccccceeccCCCceEEEEEecC-CcEEEEcC-CCeEEEEECCC
Confidence            567899999999999999998888877775432    2233445689999999999997 46888888 99999999987


Q ss_pred             Ceeeee---e---eecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccce--eee-ecccceeeeeEEecCCCEEEEec-
Q 022716           99 GKCSQQ---A---ELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKP--IHR-RKFGYEVNEIAWNMTGEMFFLTT-  168 (293)
Q Consensus        99 ~~~~~~---~---~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~--~~~-~~~~~~~~~v~~~~~~~~~~~~~-  168 (293)
                      +.....   .   .....+.+++|+|+++.+++++.|+.+++||+++...  ... ......+..+.|++.+..++... 
T Consensus        82 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  161 (337)
T 1gxr_A           82 PGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCS  161 (337)
T ss_dssp             TTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEET
T ss_pred             CCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeC
Confidence            653222   1   2345678899999999999999999999999987663  222 22445678888888776655443 


Q ss_pred             --------------------CCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEE
Q 022716          169 --------------------GNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIA  228 (293)
Q Consensus       169 --------------------~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~  228 (293)
                                          +...+.+++++|+++++++++.|+.|++||+++++.+..+ .+..++.+++|+|++++|+
T Consensus       162 dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~  240 (337)
T 1gxr_A          162 DGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH-DFTSQIFSLGYCPTGEWLA  240 (337)
T ss_dssp             TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-ECSSCEEEEEECTTSSEEE
T ss_pred             CCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeee-cCCCceEEEEECCCCCEEE
Confidence                                2346789999999999999999999999999999887766 4678899999999999999


Q ss_pred             EecCCCcEEEEEcCCCCEEEEEecCCCcceeEECCCCCeEEEEEcCCCCCC
Q 022716          229 SASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQ  279 (293)
Q Consensus       229 s~s~d~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~d~~~~~  279 (293)
                      +++.|+.|++||..+++......+..+|.+++|+|++++|++++.|+.+++
T Consensus       241 ~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~  291 (337)
T 1gxr_A          241 VGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNA  291 (337)
T ss_dssp             EEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             EEcCCCcEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEecCCCcEEE
Confidence            999999999999999887665567788999999999999999998854433

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=7.2e-34  Score=241.47  Aligned_cols=206  Identities=22%  Similarity=0.329  Sum_probs=177.0

Q ss_pred             ceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCC-CCEEEEEeCCCeE
Q 022716           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKH-ADLIATASGDKTV   91 (293)
Q Consensus        13 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~-~~~l~s~~~d~~i   91 (293)
                      ...+.+|...|.+++|+|++..|++|+.||+|++||+....    ....+.+|...|.++.++|.. +.+|++|+.|+.|
T Consensus       147 ~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~----~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v  222 (354)
T 2pbi_B          147 KKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQ----LLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKA  222 (354)
T ss_dssp             CEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC----EEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCE
T ss_pred             ceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCe----EEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeE
Confidence            35567899999999999999999999999999999997532    234578999999999998853 4789999999999


Q ss_pred             EEEeCCCCeeeeeeee-cCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCC
Q 022716           92 RLWDARSGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGN  170 (293)
Q Consensus        92 ~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  170 (293)
                      ++||++++++...+.. ...+.+++|+|++..+++++.|+++++||++...........                  ...
T Consensus       223 ~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~------------------~~~  284 (354)
T 2pbi_B          223 MVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKE------------------SII  284 (354)
T ss_dssp             EEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCT------------------TCC
T ss_pred             EEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCC------------------Ccc
Confidence            9999999988777654 456778999999999999999999999999876543321110                  112


Q ss_pred             CCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEE
Q 022716          171 AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISN  240 (293)
Q Consensus       171 ~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~  240 (293)
                      ..+.+++|+|++++|++|+.|++|++||+.++..+..+.+|..+|.+++|+|+|++|++|+.|+.|++|+
T Consensus       285 ~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          285 FGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             cceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            3567899999999999999999999999999988889999999999999999999999999999999995

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-35  Score=263.51  Aligned_cols=243  Identities=9%  Similarity=0.078  Sum_probs=185.1

Q ss_pred             ccccEEEEEECCCC---------CeEEE-------------------EeCCCcEEEeecCCCCCCceeEEEeeCCcCCee
Q 022716           19 HKKKVHSVAWNCTG---------TKLAS-------------------GSVDQTARVWHIEPHGHGKVKDIELRGHADSVD   70 (293)
Q Consensus        19 h~~~v~~l~~s~~~---------~~l~s-------------------~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~   70 (293)
                      +.+.|.+++|+|++         ++||+                   ++.|++|+||+++...........+.+|.+.|.
T Consensus       132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~  211 (524)
T 2j04_B          132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVW  211 (524)
T ss_dssp             CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEE
T ss_pred             CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEE
Confidence            56788888888876         45555                   567899999999754322211234567888999


Q ss_pred             EEEEcCC-----CCCEEEEEeCCCeEEEEeCCCCeee-----------eeee-ecCceEEEEEcCCCCEEEEEeCCCeEE
Q 022716           71 QLCWDPK-----HADLIATASGDKTVRLWDARSGKCS-----------QQAE-LSGENINITYKPDGTHIAVGNRDDELT  133 (293)
Q Consensus        71 ~~~~~~~-----~~~~l~s~~~d~~i~vwd~~~~~~~-----------~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~  133 (293)
                      .++|+|.     +..+|+|++.|++|++||+..+.+.           ..+. ....+.+++|+|++ .|++|+.|++|+
T Consensus       212 ~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~  290 (524)
T 2j04_B          212 DLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVA  290 (524)
T ss_dssp             EEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEEE
T ss_pred             EEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEE
Confidence            9999996     2469999999999999999766422           1222 23567889999864 899999999999


Q ss_pred             EEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEE--EECCCC-CEEEEecCCCcEEEEeCCCCEEEEEeec
Q 022716          134 ILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCI--AIDPMG-RYFAVGSADSLVSLWDISEMLCVRTFTK  210 (293)
Q Consensus       134 l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~l~~gs~d~~i~iwd~~~~~~~~~~~~  210 (293)
                      +||+++....                   ...+..+...+.++  +++|++ .+||+|+.|++|+|||+++++++..+.+
T Consensus       291 lWD~~~~~~~-------------------~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~  351 (524)
T 2j04_B          291 EFDLTDPEVP-------------------SFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVS  351 (524)
T ss_dssp             EEETTBCSSC-------------------SEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEE
T ss_pred             EEECCCCCCc-------------------eEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccccccc
Confidence            9999864211                   01223456678888  567887 8999999999999999988766556666


Q ss_pred             cCC--CeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEE-ecCCCcceeEECCCCCeEEEEEcCCCCCCCC
Q 022716          211 LEW--PVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQI-PCRAAMNSVEWNPKYNLLAYAGDDKNKYQAD  281 (293)
Q Consensus       211 ~~~--~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~-~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~  281 (293)
                      |..  .|.+++|+|+++.+++++.|++|++||+.++..++.+ .+..+|++|+|||++++||+|+.|+.+++|+
T Consensus       352 ~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd  425 (524)
T 2j04_B          352 RFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITN  425 (524)
T ss_dssp             ECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCB
T ss_pred             ccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEe
Confidence            543  5889999999999999999999999999998876554 5677899999999999999999998877765

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=5.9e-33  Score=251.28  Aligned_cols=267  Identities=17%  Similarity=0.256  Sum_probs=214.2

Q ss_pred             cceeecCccccEEEEEECCCCC-eEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcC---CeeEEEEcCCCCCEEEEEeC
Q 022716           12 HSREYTGHKKKVHSVAWNCTGT-KLASGSVDQTARVWHIEPHGHGKVKDIELRGHAD---SVDQLCWDPKHADLIATASG   87 (293)
Q Consensus        12 ~~~~~~~h~~~v~~l~~s~~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~---~i~~~~~~~~~~~~l~s~~~   87 (293)
                      ....+.+|...|.+++|+|+++ .|++++.||.|++||+...    .....+.+|..   .|.+++|+|+++.+|++++.
T Consensus       152 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  227 (615)
T 1pgu_A          152 SLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPF----KFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS  227 (615)
T ss_dssp             EEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTB----EEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET
T ss_pred             cceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCc----ceeeeecccCCCCceEEEEEECCCCCCEEEEEeC
Confidence            3456779999999999999998 7999999999999998642    23345778998   99999999973578999999


Q ss_pred             CCeEEEEeCCCCeeeeee-----eecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeeccc-------------
Q 022716           88 DKTVRLWDARSGKCSQQA-----ELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFG-------------  149 (293)
Q Consensus        88 d~~i~vwd~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~-------------  149 (293)
                      |+.|++||+.+++....+     .+...+.+++|+ +++++++++.|+.+++||+++.+........             
T Consensus       228 dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (615)
T 1pgu_A          228 DRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVA  306 (615)
T ss_dssp             TCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEE
T ss_pred             CCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEe
Confidence            999999999999887776     456678889999 9999999999999999998765443222111             


Q ss_pred             ------------------------------------------------------------------ceeeeeEEe-----
Q 022716          150 ------------------------------------------------------------------YEVNEIAWN-----  158 (293)
Q Consensus       150 ------------------------------------------------------------------~~~~~v~~~-----  158 (293)
                                                                                        ..+..+.|.     
T Consensus       307 ~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l  386 (615)
T 1pgu_A          307 TGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEY  386 (615)
T ss_dssp             EETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCC
T ss_pred             CCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEE
Confidence                                                                              001111110     


Q ss_pred             -----------------------------cC--------------------------------------CCEEEE-----
Q 022716          159 -----------------------------MT--------------------------------------GEMFFL-----  166 (293)
Q Consensus       159 -----------------------------~~--------------------------------------~~~~~~-----  166 (293)
                                                   +.                                      +..+..     
T Consensus       387 ~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d  466 (615)
T 1pgu_A          387 SSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEG  466 (615)
T ss_dssp             EEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTT
T ss_pred             EEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCC
Confidence                                         00                                      111111     


Q ss_pred             ------------------ecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeec-cCCCeeEEEEcc-----
Q 022716          167 ------------------TTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK-LEWPVRTISFSH-----  222 (293)
Q Consensus       167 ------------------~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~-~~~~v~~l~~sp-----  222 (293)
                                        ..+...+.+++|+|++++|++|+.|+.|++||+++++.+..+.+ |..+|.+++|+|     
T Consensus       467 ~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~  546 (615)
T 1pgu_A          467 NTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGA  546 (615)
T ss_dssp             SCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC---
T ss_pred             CeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccc
Confidence                              11234678999999999999999999999999999999988887 999999999999     


Q ss_pred             -----CCCEEEEecCCCcEEEEEcCCC-CEEEEEe-cCCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeeec
Q 022716          223 -----TGDYIASASEDLFIDISNVHTG-RTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN  292 (293)
Q Consensus       223 -----~~~~l~s~s~d~~i~iw~~~~~-~~~~~~~-~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~~  292 (293)
                           ++++|++|+.|+.|++|++.++ +.+..+. +..+|++++|+|++. |++++.|        +.++||+++.
T Consensus       547 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d--------~~v~iw~~~~  614 (615)
T 1pgu_A          547 NEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGAD--------ACIKRWNVVL  614 (615)
T ss_dssp             ---CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETT--------SCEEEEEEC-
T ss_pred             cccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCC--------ceEEEEeeec
Confidence                 9999999999999999999997 5666654 567899999999999 9999987        5788998864

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=5.8e-33  Score=241.10  Aligned_cols=243  Identities=19%  Similarity=0.300  Sum_probs=196.1

Q ss_pred             ecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEe
Q 022716           16 YTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWD   95 (293)
Q Consensus        16 ~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd   95 (293)
                      +.+|...|++++|+|+|++|++|+.||+|++||+...    .....+.+|...+.++.+++   .+|++|+.|+.+++||
T Consensus       143 ~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~----~~~~~~~~h~~~v~~~s~~~---~~l~sgs~d~~i~~~d  215 (420)
T 4gga_A          143 MEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ----KRLRNMTSHSARVGSLSWNS---YILSSGSRSGHIHHHD  215 (420)
T ss_dssp             CCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTT----EEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEE
T ss_pred             ecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCC----cEEEEEeCCCCceEEEeeCC---CEEEEEeCCCceeEee
Confidence            3477889999999999999999999999999999753    23345779999999998864   5899999999999999


Q ss_pred             CCCCee-eeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCE
Q 022716           96 ARSGKC-SQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGC  173 (293)
Q Consensus        96 ~~~~~~-~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  173 (293)
                      ...... ...+. +...+..+.+.|+++++++++.|+.+++||.+.......                .......+...+
T Consensus       216 ~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~----------------~~~~~~~~~~~V  279 (420)
T 4gga_A          216 VRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWV----------------PLQTFTQHQGAV  279 (420)
T ss_dssp             TTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSC----------------CSEEECCCSSCE
T ss_pred             ecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccce----------------eeeeecccCCce
Confidence            876543 33333 345567789999999999999999999999876542211                011223455678


Q ss_pred             EEEEECCCCC-EEEE--ecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEec--CCCcEEEEEcCCCCEEE
Q 022716          174 YCIAIDPMGR-YFAV--GSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASAS--EDLFIDISNVHTGRTVH  248 (293)
Q Consensus       174 ~~~~~~~~~~-~l~~--gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s--~d~~i~iw~~~~~~~~~  248 (293)
                      .+++++|.+. .+++  |+.|++|++||+.++.+...+..+ ..+.++.|+|+++.+++++  .|+.|+|||..+++.+.
T Consensus       280 ~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~  358 (420)
T 4gga_A          280 KAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVA  358 (420)
T ss_dssp             EEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEE
T ss_pred             eeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEE
Confidence            8889998764 4444  568999999999999988877654 5799999999999887764  79999999999999998


Q ss_pred             EEe-cCCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEee
Q 022716          249 QIP-CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGF  290 (293)
Q Consensus       249 ~~~-~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~  290 (293)
                      .+. |..+|.+++|+|++++||+||.|        +++|||++
T Consensus       359 ~l~gH~~~V~~l~~spdg~~l~S~s~D--------~tvriWdv  393 (420)
T 4gga_A          359 ELKGHTSRVLSLTMSPDGATVASAAAD--------ETLRLWRC  393 (420)
T ss_dssp             EECCCSSCEEEEEECTTSSCEEEEETT--------TEEEEECC
T ss_pred             EEcCCCCCEEEEEEcCCCCEEEEEecC--------CeEEEEEC
Confidence            876 56789999999999999999998        46777775

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.7e-35  Score=252.52  Aligned_cols=263  Identities=17%  Similarity=0.286  Sum_probs=210.6

Q ss_pred             ccccEEEEEECCCCC-eEEEE----------eCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeC
Q 022716           19 HKKKVHSVAWNCTGT-KLASG----------SVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASG   87 (293)
Q Consensus        19 h~~~v~~l~~s~~~~-~l~s~----------~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~   87 (293)
                      +...|.+++|+|+|+ +|++|          +.||.|++|++.......  ......|...|.+++|+|++ .+|++++.
T Consensus        11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~--~~~~~~~~~~v~~~~~s~~~-~~l~~~~~   87 (416)
T 2pm9_A           11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEK--PIASLQVDSKFNDLDWSHNN-KIIAGALD   87 (416)
T ss_dssp             EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCS--CSCCCCCSSCEEEEEECSSS-SCEEEEES
T ss_pred             hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCc--EEEEEecCCceEEEEECCCC-CeEEEEcc
Confidence            446789999999997 89999          899999999997532111  11233688999999999974 68899999


Q ss_pred             CCeEEEEeCCC----Ceeeeeee-ecCceEEEEEcCC-CCEEEEEeCCCeEEEEEccccc------eeee----ecccce
Q 022716           88 DKTVRLWDARS----GKCSQQAE-LSGENINITYKPD-GTHIAVGNRDDELTILDVRKFK------PIHR----RKFGYE  151 (293)
Q Consensus        88 d~~i~vwd~~~----~~~~~~~~-~~~~~~~~~~~~~-~~~l~~~~~d~~i~l~d~~~~~------~~~~----~~~~~~  151 (293)
                      |+.|++||+..    .+....+. +...+.+++|+|+ ++++++++.|+.|++||+++..      ....    ..+...
T Consensus        88 dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  167 (416)
T 2pm9_A           88 NGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDE  167 (416)
T ss_dssp             SSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCC
T ss_pred             CCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCC
Confidence            99999999987    23444433 4566789999998 8999999999999999998765      2222    234567


Q ss_pred             eeeeEEecC-CCEEEEec---------------------C------CCCEEEEEECCCC-CEEEEecCCC---cEEEEeC
Q 022716          152 VNEIAWNMT-GEMFFLTT---------------------G------NAGCYCIAIDPMG-RYFAVGSADS---LVSLWDI  199 (293)
Q Consensus       152 ~~~v~~~~~-~~~~~~~~---------------------~------~~~~~~~~~~~~~-~~l~~gs~d~---~i~iwd~  199 (293)
                      +..+.|++. +..+....                     +      ...+.+++|+|++ .++++++.|+   .|++||+
T Consensus       168 v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~  247 (416)
T 2pm9_A          168 VISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDL  247 (416)
T ss_dssp             CCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEET
T ss_pred             eeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeC
Confidence            888899887 44433222                     1      3458899999997 6899999999   9999999


Q ss_pred             CCC-EEEEEee-ccCCCeeEEEEcc-CCCEEEEecCCCcEEEEEcCCCCEEEEEe-cCCCcceeEECCCC-CeEEEEEcC
Q 022716          200 SEM-LCVRTFT-KLEWPVRTISFSH-TGDYIASASEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKY-NLLAYAGDD  274 (293)
Q Consensus       200 ~~~-~~~~~~~-~~~~~v~~l~~sp-~~~~l~s~s~d~~i~iw~~~~~~~~~~~~-~~~~i~~~~~sp~~-~~la~~~~d  274 (293)
                      +++ ..+..+. +|...|.+++|+| ++++|++++.|+.|++||+.+++.+..+. +...|.+++|+|++ .+|++++.|
T Consensus       248 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d  327 (416)
T 2pm9_A          248 RNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFD  327 (416)
T ss_dssp             TSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSS
T ss_pred             CCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecC
Confidence            875 5566677 8999999999999 99999999999999999999999888775 45689999999999 899999987


Q ss_pred             CCCCCCCcceEEEEeeec
Q 022716          275 KNKYQADEGVFRIYGFEN  292 (293)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~  292 (293)
                              +.++||+++.
T Consensus       328 --------~~i~iw~~~~  337 (416)
T 2pm9_A          328 --------NKIEVQTLQN  337 (416)
T ss_dssp             --------SEEEEEESCC
T ss_pred             --------CcEEEEEccC
Confidence                    4677777653

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=2.6e-33  Score=272.82  Aligned_cols=227  Identities=20%  Similarity=0.296  Sum_probs=192.6

Q ss_pred             cceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCC-CCEEEEEeCCCe
Q 022716           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKH-ADLIATASGDKT   90 (293)
Q Consensus        12 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~-~~~l~s~~~d~~   90 (293)
                      ....+.+|...|.+++|+|+|++|++|+.||+|++||+...    .....+.+|...|.++.|+|.+ ..++++|+.|+.
T Consensus       649 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~  724 (1249)
T 3sfz_A          649 KLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATG----KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFF  724 (1249)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC----CEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSC
T ss_pred             EEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCC----ceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCe
Confidence            34667899999999999999999999999999999999753    1234577999999999999853 458899999999


Q ss_pred             EEEEeCCCCeeeeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecc--------------cceeeee
Q 022716           91 VRLWDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF--------------GYEVNEI  155 (293)
Q Consensus        91 i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~--------------~~~~~~v  155 (293)
                      |++||+.++++...+. +.+.+.+++|+|+++.+++++.|+.+++||+++.........              ...+..+
T Consensus       725 v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  804 (1249)
T 3sfz_A          725 LKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCC  804 (1249)
T ss_dssp             EEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCC
T ss_pred             EEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEE
Confidence            9999999998877665 455677899999999999999999999999987765444321              1246677


Q ss_pred             EEecCCCEEEEe---------------------cCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCC
Q 022716          156 AWNMTGEMFFLT---------------------TGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWP  214 (293)
Q Consensus       156 ~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~  214 (293)
                      .|++++..+...                     .+...+.+++++|+++++++++.|+.|++||+.++..+..+.+|..+
T Consensus       805 ~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~  884 (1249)
T 3sfz_A          805 SWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSW  884 (1249)
T ss_dssp             CBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSC
T ss_pred             EECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccc
Confidence            788877765543                     33456788999999999999999999999999999999999999999


Q ss_pred             eeEEEEccCCCEEEEecCCCcEEEEEcC
Q 022716          215 VRTISFSHTGDYIASASEDLFIDISNVH  242 (293)
Q Consensus       215 v~~l~~sp~~~~l~s~s~d~~i~iw~~~  242 (293)
                      |.+++|+|+|++|++++.|+.|++|+..
T Consensus       885 v~~v~~spdg~~l~s~s~dg~v~vw~~~  912 (1249)
T 3sfz_A          885 VHGVMFSPDGSSFLTASDDQTIRVWETK  912 (1249)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEEHH
T ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEEcc
Confidence            9999999999999999999999999854

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=2.1e-33  Score=237.72  Aligned_cols=231  Identities=20%  Similarity=0.315  Sum_probs=181.9

Q ss_pred             cCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeC
Q 022716           17 TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDA   96 (293)
Q Consensus        17 ~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~   96 (293)
                      .+|...|.+++|+|+|++|++|+.|++|++|++....  ......+.+|...|.+++|+|+ +.+|++|+.|+.|++||+
T Consensus        58 ~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~--~~~~~~~~~h~~~v~~v~~sp~-~~~l~s~s~D~~v~iwd~  134 (345)
T 3fm0_A           58 EGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDD--FECVTTLEGHENEVKSVAWAPS-GNLLATCSRDKSVWVWEV  134 (345)
T ss_dssp             SSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC---EEEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEEE
T ss_pred             cccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCC--eEEEEEccCCCCCceEEEEeCC-CCEEEEEECCCeEEEEEC
Confidence            6899999999999999999999999999999986432  1223467899999999999997 578999999999999999


Q ss_pred             CCCee---eeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEcccccee--ee-ecccceeeeeEEecCCCEEEEec-
Q 022716           97 RSGKC---SQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPI--HR-RKFGYEVNEIAWNMTGEMFFLTT-  168 (293)
Q Consensus        97 ~~~~~---~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~--~~-~~~~~~~~~v~~~~~~~~~~~~~-  168 (293)
                      +.+..   ...+. +...+.+++|+|++++|++++.|+++++||++.....  .. ..+...+..+.|+|.+..+...+ 
T Consensus       135 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~  214 (345)
T 3fm0_A          135 DEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSD  214 (345)
T ss_dssp             CTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             CCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeC
Confidence            87642   23333 3456778999999999999999999999999876432  22 23556789999999887655332 


Q ss_pred             ------------------------------------CCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCE---------
Q 022716          169 ------------------------------------GNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEML---------  203 (293)
Q Consensus       169 ------------------------------------~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~---------  203 (293)
                                                          +...+.+++++|++..|++++.|+.|++|+.....         
T Consensus       215 D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~  294 (345)
T 3fm0_A          215 DRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSL  294 (345)
T ss_dssp             TSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEE
T ss_pred             CCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEE
Confidence                                                23457789999999999999999999999976431         


Q ss_pred             EEEEeeccCCCeeEEEEccCC-CEEEEecCCCcEEEEEcCCCCEEEEE
Q 022716          204 CVRTFTKLEWPVRTISFSHTG-DYIASASEDLFIDISNVHTGRTVHQI  250 (293)
Q Consensus       204 ~~~~~~~~~~~v~~l~~sp~~-~~l~s~s~d~~i~iw~~~~~~~~~~~  250 (293)
                      ......+|...|.+++|+|++ .+||+|+.|+.|++|+..+++.+..+
T Consensus       295 ~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~~  342 (345)
T 3fm0_A          295 TAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLHHH  342 (345)
T ss_dssp             EEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC-------
T ss_pred             EeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCcccc
Confidence            122345788999999999998 49999999999999999887765443

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=3.9e-33  Score=232.01  Aligned_cols=222  Identities=17%  Similarity=0.230  Sum_probs=186.0

Q ss_pred             EEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeeee-cCceEEEEEcCCCCEEEEEeCCCeEEEEEcc
Q 022716           60 IELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVR  138 (293)
Q Consensus        60 ~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~  138 (293)
                      ..+.+|.+.|.+++|+|++ .+|++++.|+.|++||+.++.....+.. ...+.+++|+|+++++++|+.|++|++||++
T Consensus         7 ~~~~~h~~~V~~~~fsp~~-~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~   85 (304)
T 2ynn_A            7 KTFSNRSDRVKGIDFHPTE-PWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYN   85 (304)
T ss_dssp             EEEEEECSCEEEEEECSSS-SEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETT
T ss_pred             EeecCCCCceEEEEECCCC-CEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECC
Confidence            3578999999999999974 6899999999999999999988777664 4567789999999999999999999999999


Q ss_pred             ccceeeeec-ccceeeeeEEecCCCEEEEec----------------------CCCCEEEEEECC-CCCEEEEecCCCcE
Q 022716          139 KFKPIHRRK-FGYEVNEIAWNMTGEMFFLTT----------------------GNAGCYCIAIDP-MGRYFAVGSADSLV  194 (293)
Q Consensus       139 ~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~----------------------~~~~~~~~~~~~-~~~~l~~gs~d~~i  194 (293)
                      +.+...... +...+..+.|+|.+..++..+                      +...+.+++|+| ++..|++|+.|++|
T Consensus        86 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v  165 (304)
T 2ynn_A           86 TGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTV  165 (304)
T ss_dssp             TCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEE
T ss_pred             CCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeE
Confidence            887765544 556788899988876654332                      345678999999 57899999999999


Q ss_pred             EEEeCCCCEEEEEee-ccCCCeeEEEEcc--CCCEEEEecCCCcEEEEEcCCCCEEEEEe-cCCCcceeEECCCCCeEEE
Q 022716          195 SLWDISEMLCVRTFT-KLEWPVRTISFSH--TGDYIASASEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAY  270 (293)
Q Consensus       195 ~iwd~~~~~~~~~~~-~~~~~v~~l~~sp--~~~~l~s~s~d~~i~iw~~~~~~~~~~~~-~~~~i~~~~~sp~~~~la~  270 (293)
                      ++||+++......+. .+...+..++|+|  ++++|++|+.|+.|++||+.+++.+..+. +...|.+++|+|++++|++
T Consensus       166 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s  245 (304)
T 2ynn_A          166 KVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIIS  245 (304)
T ss_dssp             EEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEE
T ss_pred             EEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEE
Confidence            999998765444443 4567899999987  77899999999999999999998888775 4568999999999999999


Q ss_pred             EEcCCCCCCCCc
Q 022716          271 AGDDKNKYQADE  282 (293)
Q Consensus       271 ~~~d~~~~~~~~  282 (293)
                      |+.|+.+++|+.
T Consensus       246 ~s~Dg~i~iWd~  257 (304)
T 2ynn_A          246 GSEDGTLKIWNS  257 (304)
T ss_dssp             EETTSCEEEEET
T ss_pred             EcCCCeEEEEEC
Confidence            999976666654

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3.4e-35  Score=251.07  Aligned_cols=222  Identities=18%  Similarity=0.270  Sum_probs=165.0

Q ss_pred             cceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (293)
Q Consensus        12 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i   91 (293)
                      ..+.+.+|...|.+++|+|++++|++|+.||+|++||+.... .......+.+|...|.+++|+|+ +.+|++++.|+.|
T Consensus        47 ~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i  124 (377)
T 3dwl_C           47 HARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDG-TWKQTLVLLRLNRAATFVRWSPN-EDKFAVGSGARVI  124 (377)
T ss_dssp             ECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC-------CCCCEEECCCCSSCEEEEECCTT-SSCCEEEESSSCE
T ss_pred             EEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCC-ceeeeeEecccCCceEEEEECCC-CCEEEEEecCCeE
Confidence            345678999999999999999999999999999999997542 01123456789999999999996 4678899999999


Q ss_pred             EEEeCCCCee---eeeee--ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeec---ccceeeeeEEecCCCE
Q 022716           92 RLWDARSGKC---SQQAE--LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK---FGYEVNEIAWNMTGEM  163 (293)
Q Consensus        92 ~vwd~~~~~~---~~~~~--~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~---~~~~~~~v~~~~~~~~  163 (293)
                      ++||+++++.   ...+.  +...+.+++|+|++++|++++.|+.+++||++.........   .+....      .+..
T Consensus       125 ~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~------~~~~  198 (377)
T 3dwl_C          125 SVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLP------FNTV  198 (377)
T ss_dssp             EECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCC------EEEE
T ss_pred             EEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccc------hhhh
Confidence            9999988762   34443  45678899999999999999999999999986533211100   000000      0011


Q ss_pred             EEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEE----EEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEE
Q 022716          164 FFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLC----VRTFTKLEWPVRTISFSHTGDYIASASEDLFIDIS  239 (293)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~----~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw  239 (293)
                      .....+...+.+++|+|++++|++++.|+.|++||++++..    +..+..|..+|.+++|+|++++|++|+.|+.+ +|
T Consensus       199 ~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~  277 (377)
T 3dwl_C          199 CAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LL  277 (377)
T ss_dssp             EECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EE
T ss_pred             hhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EE
Confidence            11115667799999999999999999999999999988765    67788899999999999999999999888777 55


Q ss_pred             EcC
Q 022716          240 NVH  242 (293)
Q Consensus       240 ~~~  242 (293)
                      +..
T Consensus       278 ~~~  280 (377)
T 3dwl_C          278 QGN  280 (377)
T ss_dssp             CCC
T ss_pred             EeC
Confidence            543

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.8e-34  Score=270.48  Aligned_cols=262  Identities=14%  Similarity=0.155  Sum_probs=196.4

Q ss_pred             eeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeE----------EEeeCCcCCeeEEEEcCCCCCEEE
Q 022716           14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKD----------IELRGHADSVDQLCWDPKHADLIA   83 (293)
Q Consensus        14 ~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~----------~~~~~h~~~i~~~~~~~~~~~~l~   83 (293)
                      ..+. |...|++++|+|++++|++|+.||+|++||+....   ...          ..+.+|...|.+++|+|++...++
T Consensus        93 ~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~---~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~  168 (902)
T 2oaj_A           93 TTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQ---LSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVL  168 (902)
T ss_dssp             EEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTE---EEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEE
T ss_pred             EEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCc---cccceeccccccccccccCCCCeEEEEEccCCCCEEE
Confidence            3443 67899999999999999999999999999997532   111          123679999999999997667899


Q ss_pred             EEeCCCeEEEEeCCCCeeeeeeeec-------------------CceEEEEEcCCCCEEEEEeCCCeEEEEEccccceee
Q 022716           84 TASGDKTVRLWDARSGKCSQQAELS-------------------GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIH  144 (293)
Q Consensus        84 s~~~d~~i~vwd~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~  144 (293)
                      +|+.|+.| +||++++++...+..+                   ..+.+++|+|+|++|++++.|++|++||+++.+++.
T Consensus       169 ~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~  247 (902)
T 2oaj_A          169 ISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIM  247 (902)
T ss_dssp             EECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEE
T ss_pred             EEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEE
Confidence            99999999 9999999877666543                   457899999999999999999999999998766543


Q ss_pred             eec-------------------ccceeeeeEEecC----CCEEEEec---------------------------------
Q 022716          145 RRK-------------------FGYEVNEIAWNMT----GEMFFLTT---------------------------------  168 (293)
Q Consensus       145 ~~~-------------------~~~~~~~v~~~~~----~~~~~~~~---------------------------------  168 (293)
                      ...                   ....+..+.|.+.    +..+++..                                 
T Consensus       248 ~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~  327 (902)
T 2oaj_A          248 ARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNY  327 (902)
T ss_dssp             EECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHH
T ss_pred             EEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhh
Confidence            211                   0124556666321    00000000                                 


Q ss_pred             --------------------------------------------CC----------------------------CCEEEE
Q 022716          169 --------------------------------------------GN----------------------------AGCYCI  176 (293)
Q Consensus       169 --------------------------------------------~~----------------------------~~~~~~  176 (293)
                                                                  .+                            ..+.++
T Consensus       328 ~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~  407 (902)
T 2oaj_A          328 YANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTS  407 (902)
T ss_dssp             HHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEE
T ss_pred             hcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEE
Confidence                                                        00                            112222


Q ss_pred             ----------------------------------EECCCCCEEEEecCCCcEEEEeCCCCEEE----EE--ee-----cc
Q 022716          177 ----------------------------------AIDPMGRYFAVGSADSLVSLWDISEMLCV----RT--FT-----KL  211 (293)
Q Consensus       177 ----------------------------------~~~~~~~~l~~gs~d~~i~iwd~~~~~~~----~~--~~-----~~  211 (293)
                                                        +|+|++++|++|+.|++|++||+..+...    ..  +.     +|
T Consensus       408 ~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h  487 (902)
T 2oaj_A          408 MAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAK  487 (902)
T ss_dssp             EEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSS
T ss_pred             EEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCC
Confidence                                              34678899999999999999998765311    11  11     68


Q ss_pred             CCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCC---------------------------------------------E
Q 022716          212 EWPVRTISFSHTGDYIASASEDLFIDISNVHTGR---------------------------------------------T  246 (293)
Q Consensus       212 ~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~---------------------------------------------~  246 (293)
                      ...|.+++|+|+|++||+|+.|++|+||++.+++                                             .
T Consensus       488 ~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  567 (902)
T 2oaj_A          488 ELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMP  567 (902)
T ss_dssp             SCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEE
T ss_pred             CCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccce
Confidence            8899999999999999999999999999998663                                             1


Q ss_pred             EEEEe-cCCCcceeEECCCCCeEEEEEcCCCCCCCC
Q 022716          247 VHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNKYQAD  281 (293)
Q Consensus       247 ~~~~~-~~~~i~~~~~sp~~~~la~~~~d~~~~~~~  281 (293)
                      +..+. +..+|++|+|||+| +||+|+.|+.+++||
T Consensus       568 ~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd  602 (902)
T 2oaj_A          568 STAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLID  602 (902)
T ss_dssp             EEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEE
T ss_pred             eEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEE
Confidence            33443 56789999999999 999999997555544

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-33  Score=265.26  Aligned_cols=246  Identities=14%  Similarity=0.138  Sum_probs=195.2

Q ss_pred             eeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEE
Q 022716           14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL   93 (293)
Q Consensus        14 ~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~v   93 (293)
                      ....||...|++++|+|++++||+|+.||+|++|+....     .......|...|.+++|+| + .+|++++.|+.|++
T Consensus        11 ~~~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~-----~~~~~~~~~~~V~~l~fsp-g-~~L~S~s~D~~v~l   83 (902)
T 2oaj_A           11 TNKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQV-----EVVIKLEDRSAIKEMRFVK-G-IYLVVINAKDTVYV   83 (902)
T ss_dssp             EEEEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTC-----EEEEECSSCCCEEEEEEET-T-TEEEEEETTCEEEE
T ss_pred             ccccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCc-----EEEEEcCCCCCEEEEEEcC-C-CEEEEEECcCeEEE
Confidence            344589999999999999999999999999999997532     1122345788999999999 4 58999999999999


Q ss_pred             EeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCE
Q 022716           94 WDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGC  173 (293)
Q Consensus        94 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  173 (293)
                      ||++++++...+..++.+.+++|+|+++++++|+.|++|++||+++...... ...    . .|...   .....+...+
T Consensus        84 Wd~~~~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~-~i~----~-~~~~~---~~~~~h~~~V  154 (902)
T 2oaj_A           84 LSLYSQKVLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSF-KLD----N-LQKSS---FFPAARLSPI  154 (902)
T ss_dssp             EETTTCSEEEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEE-EEC----C-HHHHH---TCSSSCCCCC
T ss_pred             EECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccc-eec----c-ccccc---cccccCCCCe
Confidence            9999998888777778889999999999999999999999999987653210 000    0 00000   0012345678


Q ss_pred             EEEEECCC-CCEEEEecCCCcEEEEeCCCCEEEEEeecc------------------CCCeeEEEEccCCCEEEEecCCC
Q 022716          174 YCIAIDPM-GRYFAVGSADSLVSLWDISEMLCVRTFTKL------------------EWPVRTISFSHTGDYIASASEDL  234 (293)
Q Consensus       174 ~~~~~~~~-~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~------------------~~~v~~l~~sp~~~~l~s~s~d~  234 (293)
                      .+++|+|+ +..+++|+.|+.| +||+++++.+..+..|                  ..+|.+++|+|+|++||+|+.|+
T Consensus       155 ~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg  233 (902)
T 2oaj_A          155 VSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDN  233 (902)
T ss_dssp             CEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTC
T ss_pred             EEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCC
Confidence            89999996 4789999999999 9999999888887655                  46799999999999999999999


Q ss_pred             cEEEEEcCCCCEEEEEe-------------------cCCCcceeEEC----CCC-CeEEEEEcCCC
Q 022716          235 FIDISNVHTGRTVHQIP-------------------CRAAMNSVEWN----PKY-NLLAYAGDDKN  276 (293)
Q Consensus       235 ~i~iw~~~~~~~~~~~~-------------------~~~~i~~~~~s----p~~-~~la~~~~d~~  276 (293)
                      .|++||+.+++.+....                   +..+|++++|+    |++ .+|++|+.|.+
T Consensus       234 ~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~  299 (902)
T 2oaj_A          234 SLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISR  299 (902)
T ss_dssp             CEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTT
T ss_pred             eEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCC
Confidence            99999999988765311                   13368999995    554 56777777653

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=1.3e-33  Score=246.06  Aligned_cols=253  Identities=19%  Similarity=0.345  Sum_probs=200.8

Q ss_pred             eeecCccccEEEEEECCC-CCeEEEEeCCCcEEEeecCCCCC------CceeEEEeeCCcCCeeEEEEcCCCCCEEEEEe
Q 022716           14 REYTGHKKKVHSVAWNCT-GTKLASGSVDQTARVWHIEPHGH------GKVKDIELRGHADSVDQLCWDPKHADLIATAS   86 (293)
Q Consensus        14 ~~~~~h~~~v~~l~~s~~-~~~l~s~~~dg~v~iw~~~~~~~------~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~   86 (293)
                      ....+|.+.|.+++|+|+ +++|++|+.||.|++|++.....      .......+.+|...|.+++|+|.+..+|++|+
T Consensus       122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  201 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS  201 (430)
T ss_dssp             EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred             EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence            445689999999999998 67899999999999999974200      01223457799999999999998766999999


Q ss_pred             CCCeEEEEeCCCCee-------eeee-eecCceEEEEEcC-CCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEE
Q 022716           87 GDKTVRLWDARSGKC-------SQQA-ELSGENINITYKP-DGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAW  157 (293)
Q Consensus        87 ~d~~i~vwd~~~~~~-------~~~~-~~~~~~~~~~~~~-~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~  157 (293)
                      .||.|++||+..+..       ...+ .+...+.+++|+| ++..+++++.|+.|++||+++.....             
T Consensus       202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~-------------  268 (430)
T 2xyi_A          202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSK-------------  268 (430)
T ss_dssp             TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSS-------------
T ss_pred             CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCc-------------
Confidence            999999999987422       1122 2345678899999 67889999999999999998753110             


Q ss_pred             ecCCCEEEEecCCCCEEEEEECCCCC-EEEEecCCCcEEEEeCCC-CEEEEEeeccCCCeeEEEEccCCC-EEEEecCCC
Q 022716          158 NMTGEMFFLTTGNAGCYCIAIDPMGR-YFAVGSADSLVSLWDISE-MLCVRTFTKLEWPVRTISFSHTGD-YIASASEDL  234 (293)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~gs~d~~i~iwd~~~-~~~~~~~~~~~~~v~~l~~sp~~~-~l~s~s~d~  234 (293)
                          ....+..+...+.+++|+|++. ++++|+.||.|++||+++ ...+..+..|..+|.+++|+|+++ +|++++.|+
T Consensus       269 ----~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~  344 (430)
T 2xyi_A          269 ----PSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDR  344 (430)
T ss_dssp             ----CSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTS
T ss_pred             ----ceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCC
Confidence                0011234566788999999987 789999999999999987 456778888999999999999995 699999999


Q ss_pred             cEEEEEcCC--------------CCEEEEEe-cCCCcceeEECCCCC-eEEEEEcCCCCCCCCcceEEEEeee
Q 022716          235 FIDISNVHT--------------GRTVHQIP-CRAAMNSVEWNPKYN-LLAYAGDDKNKYQADEGVFRIYGFE  291 (293)
Q Consensus       235 ~i~iw~~~~--------------~~~~~~~~-~~~~i~~~~~sp~~~-~la~~~~d~~~~~~~~~~~~~~~~~  291 (293)
                      .|++||+..              ...+.... +...|++++|+|+++ +|++++.|        +.++||+++
T Consensus       345 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~d--------g~i~iw~~~  409 (430)
T 2xyi_A          345 RLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSED--------NIMQVWQMA  409 (430)
T ss_dssp             CCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETT--------SEEEEEEEC
T ss_pred             cEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECC--------CCEEEeEcc
Confidence            999999987              24444443 456799999999998 89999877        578888875

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=6.3e-33  Score=235.77  Aligned_cols=254  Identities=10%  Similarity=0.129  Sum_probs=186.7

Q ss_pred             ceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEE
Q 022716           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (293)
Q Consensus        13 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~   92 (293)
                      .+.+.+|...|.+++|+|||++|++|+.|+ +++|++++.    ...  ...+...+..+.+.+....++++++.|+.|+
T Consensus        12 ~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~   84 (355)
T 3vu4_A           12 IVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPV----AHI--MSQEMRHLSKVRMLHRTNYVAFVTGVKEVVH   84 (355)
T ss_dssp             -------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTE----EEE--EEEECSCCCEEEECTTSSEEEEECSSTTEEE
T ss_pred             ccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCc----cee--eeeecCCeEEEEEcCCCCEEEEEECCccEEE
Confidence            345678999999999999999999998775 789998642    111  1122235777788776544557788899999


Q ss_pred             EEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEcccc-ceeeeecc----------------c-ceeee
Q 022716           93 LWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKF-KPIHRRKF----------------G-YEVNE  154 (293)
Q Consensus        93 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~-~~~~~~~~----------------~-~~~~~  154 (293)
                      +||..+++++..+.....+.+++++++.  ++++ .|+.+++||+++. +.+.....                + ..-..
T Consensus        85 iWd~~~~~~~~~~~~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g~v  161 (355)
T 3vu4_A           85 IWDDVKKQDVSRIKVDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQI  161 (355)
T ss_dssp             EEETTTTEEEEEEECSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCTTCE
T ss_pred             EEECCCCcEEEEEECCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcCcEE
Confidence            9999999998888888888899998763  4443 4789999999876 33322210                0 00011


Q ss_pred             eEEecCCC------------------EEEEecCCCCEEEEEECCCCCEEEEecCCCc-EEEEeCCCCEEEEEee-c-cCC
Q 022716          155 IAWNMTGE------------------MFFLTTGNAGCYCIAIDPMGRYFAVGSADSL-VSLWDISEMLCVRTFT-K-LEW  213 (293)
Q Consensus       155 v~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~-i~iwd~~~~~~~~~~~-~-~~~  213 (293)
                      ..|+....                  ...+..+...+.+++|+|++++|++|+.|++ |++||+++++++.++. + |..
T Consensus       162 ~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~  241 (355)
T 3vu4_A          162 HITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRA  241 (355)
T ss_dssp             EEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCS
T ss_pred             EEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCC
Confidence            23444321                  3456677888999999999999999999998 9999999999999998 5 899


Q ss_pred             CeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEE--EE--------------------Ee--cCCCcceeEECCCCCeEE
Q 022716          214 PVRTISFSHTGDYIASASEDLFIDISNVHTGRTV--HQ--------------------IP--CRAAMNSVEWNPKYNLLA  269 (293)
Q Consensus       214 ~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~--~~--------------------~~--~~~~i~~~~~sp~~~~la  269 (293)
                      +|.+++|+|++++|++++.|+.|++||+..+...  ..                    +.  ...+...++|+|++++++
T Consensus       242 ~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~  321 (355)
T 3vu4_A          242 DVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVV  321 (355)
T ss_dssp             CEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEE
T ss_pred             cEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEE
Confidence            9999999999999999999999999999765321  11                    11  012246799999999999


Q ss_pred             EEEcCCC
Q 022716          270 YAGDDKN  276 (293)
Q Consensus       270 ~~~~d~~  276 (293)
                      +++.|+.
T Consensus       322 ~~~~dg~  328 (355)
T 3vu4_A          322 VWPHTRM  328 (355)
T ss_dssp             EETTTTE
T ss_pred             EEeCCCe
Confidence            9998753

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=2.1e-34  Score=248.14  Aligned_cols=257  Identities=13%  Similarity=0.080  Sum_probs=166.7

Q ss_pred             ccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCcee-EEEeeCCcCCeeEEEEcCC-------CCCEEEEEeCCCe
Q 022716           19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVK-DIELRGHADSVDQLCWDPK-------HADLIATASGDKT   90 (293)
Q Consensus        19 h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~-~~~~~~h~~~i~~~~~~~~-------~~~~l~s~~~d~~   90 (293)
                      |...+....+++++.+|++|+.|++|++||+......... ...+.+|.+.|++++|+|.       ++++|+||+.|++
T Consensus        88 ~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~t  167 (393)
T 4gq1_A           88 HDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCT  167 (393)
T ss_dssp             ---------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSE
T ss_pred             cCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCe
Confidence            3334444445556778999999999999998753211111 1135789999999999872       3568999999999


Q ss_pred             EEEEeCCCCeeee-eeeecCceEEEEEcCCCC-EEEEEeCCCeEEEEEccccceeeeecc-c--ceeeeeEEe--cCCCE
Q 022716           91 VRLWDARSGKCSQ-QAELSGENINITYKPDGT-HIAVGNRDDELTILDVRKFKPIHRRKF-G--YEVNEIAWN--MTGEM  163 (293)
Q Consensus        91 i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~l~d~~~~~~~~~~~~-~--~~~~~v~~~--~~~~~  163 (293)
                      |+|||+.++.+.. ...++..+.+++|+|++. +|++++.|++|++||+++.+....... .  .....+.+.  +....
T Consensus       168 v~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~  247 (393)
T 4gq1_A          168 LIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNT  247 (393)
T ss_dssp             EEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC--
T ss_pred             EEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceee
Confidence            9999998776544 455778889999999875 799999999999999987654433221 1  111111111  12222


Q ss_pred             EEEecCCCCEEEEEEC-CCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEE------------------Ecc--
Q 022716          164 FFLTTGNAGCYCIAID-PMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTIS------------------FSH--  222 (293)
Q Consensus       164 ~~~~~~~~~~~~~~~~-~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~------------------~sp--  222 (293)
                      .....+...+.++.+. |+++.+++++.|+++++||+..+.....+..+...+..+.                  |+|  
T Consensus       248 ~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (393)
T 4gq1_A          248 CHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRY  327 (393)
T ss_dssp             ----CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSC
T ss_pred             eecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCC
Confidence            2334455667788775 8999999999999999999987766555555544443333                  333  


Q ss_pred             CCCEEEEecCCCcEEEEEcCCCCEEEE-EecCCCcceeEECCCCCeEEEEEcCC
Q 022716          223 TGDYIASASEDLFIDISNVHTGRTVHQ-IPCRAAMNSVEWNPKYNLLAYAGDDK  275 (293)
Q Consensus       223 ~~~~l~s~s~d~~i~iw~~~~~~~~~~-~~~~~~i~~~~~sp~~~~la~~~~d~  275 (293)
                      ++.++++|+.|+.|++||..+++.+.. ..+..+|++++|||+|++||+++.++
T Consensus       328 ~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G  381 (393)
T 4gq1_A          328 MDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS  381 (393)
T ss_dssp             TTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE
T ss_pred             CCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC
Confidence            345778899999999999999876554 56678999999999999999999764

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.2e-32  Score=268.06  Aligned_cols=262  Identities=19%  Similarity=0.236  Sum_probs=217.1

Q ss_pred             ceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEE
Q 022716           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (293)
Q Consensus        13 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~   92 (293)
                      ...+.+|.+.|++++|+|+|++|++|+.||+|++||+....    ....+.+|...|.+++|+|+ +.+|++++.|+.|+
T Consensus       608 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~----~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~d~~v~  682 (1249)
T 3sfz_A          608 RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGE----KLLDIKAHEDEVLCCAFSSD-DSYIATCSADKKVK  682 (1249)
T ss_dssp             SEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC----EEEEECCCSSCEEEEEECTT-SSEEEEEETTSEEE
T ss_pred             eEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCC----EEEEeccCCCCEEEEEEecC-CCEEEEEeCCCeEE
Confidence            34567999999999999999999999999999999997532    33457799999999999997 46899999999999


Q ss_pred             EEeCCCCeeeeeeee-cCceEEEEEcC--CCCEEEEEeCCCeEEEEEccccceeeee-cccceeeeeEEecCCCEEEEec
Q 022716           93 LWDARSGKCSQQAEL-SGENINITYKP--DGTHIAVGNRDDELTILDVRKFKPIHRR-KFGYEVNEIAWNMTGEMFFLTT  168 (293)
Q Consensus        93 vwd~~~~~~~~~~~~-~~~~~~~~~~~--~~~~l~~~~~d~~i~l~d~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~  168 (293)
                      +||+.++++...+.. ...+.+++|+|  ++..+++++.|+.+++||+++....... .+...+..+.|+|.+..+...+
T Consensus       683 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s  762 (1249)
T 3sfz_A          683 IWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCS  762 (1249)
T ss_dssp             EEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEE
T ss_pred             EEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEE
Confidence            999999988877654 45677899999  5568999999999999999988766554 3556788888888877665544


Q ss_pred             CCC----------------------------------CEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEee-ccCC
Q 022716          169 GNA----------------------------------GCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT-KLEW  213 (293)
Q Consensus       169 ~~~----------------------------------~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~-~~~~  213 (293)
                      .++                                  .+.+++|+|+++.+++++ ++.+.+||+.++..+..+. +|..
T Consensus       763 ~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~~~~~~~~~~~  841 (1249)
T 3sfz_A          763 ADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLAEIHTGHHS  841 (1249)
T ss_dssp             SSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCEEEEEECSSSS
T ss_pred             CCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEEEEEecCCCceeEEcCCCCC
Confidence            332                                  244567888888888877 6789999988877766655 7888


Q ss_pred             CeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEe-cCCCcceeEECCCCCeEEEEEcCCCCCCC
Q 022716          214 PVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNKYQA  280 (293)
Q Consensus       214 ~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~-~~~~i~~~~~sp~~~~la~~~~d~~~~~~  280 (293)
                      .|.+++|+|+++++++++.|+.|++|+..++..+..+. +...|.+++|+|++++|++++.|+.+++|
T Consensus       842 ~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw  909 (1249)
T 3sfz_A          842 TIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVW  909 (1249)
T ss_dssp             CCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             ceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEE
Confidence            99999999999999999999999999999998877765 45679999999999999999988644443

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=8.1e-34  Score=247.64  Aligned_cols=252  Identities=15%  Similarity=0.272  Sum_probs=188.7

Q ss_pred             ceeecCcc------------ccEEEEEECCCC--CeEEEEeCCCcEEEeecCCCCCC-----------------------
Q 022716           13 SREYTGHK------------KKVHSVAWNCTG--TKLASGSVDQTARVWHIEPHGHG-----------------------   55 (293)
Q Consensus        13 ~~~~~~h~------------~~v~~l~~s~~~--~~l~s~~~dg~v~iw~~~~~~~~-----------------------   55 (293)
                      ...+.+|.            ..|.+++|+|++  ..|++++.||+|++|++......                       
T Consensus        74 ~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  153 (447)
T 3dw8_B           74 YSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLR  153 (447)
T ss_dssp             EEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCC
T ss_pred             ecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceE
Confidence            45678998            889999999998  79999999999999998631100                       


Q ss_pred             -------------ceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCC-Ceeeeee--------eecCceEE
Q 022716           56 -------------KVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS-GKCSQQA--------ELSGENIN  113 (293)
Q Consensus        56 -------------~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~-~~~~~~~--------~~~~~~~~  113 (293)
                                   ........+|...|.+++|+|+ +.+|++| .|+.|++||+++ +++...+        .+...+.+
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~  231 (447)
T 3dw8_B          154 VPVFRPMDLMVEASPRRIFANAHTYHINSISINSD-YETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITA  231 (447)
T ss_dssp             CCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTT-SSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEE
T ss_pred             eccccchheeeeccceEEeccCCCcceEEEEEcCC-CCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEE
Confidence                         0000113679999999999996 5688888 899999999984 3333322        23456789


Q ss_pred             EEEcCCC-CEEEEEeCCCeEEEEEccccce----eeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEe
Q 022716          114 ITYKPDG-THIAVGNRDDELTILDVRKFKP----IHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVG  188 (293)
Q Consensus       114 ~~~~~~~-~~l~~~~~d~~i~l~d~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g  188 (293)
                      ++|+|++ +.+++++.|+.|++||+++...    ...........        ....+..+...+.+++|+|++++|+++
T Consensus       232 ~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~v~~~~~s~~g~~l~~~  303 (447)
T 3dw8_B          232 AEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPS--------NRSFFSEIISSISDVKFSHSGRYMMTR  303 (447)
T ss_dssp             EEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-------------CCHHHHHTTCEEEEEECTTSSEEEEE
T ss_pred             EEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCcc--------ccccccccCceEEEEEECCCCCEEEEe
Confidence            9999998 9999999999999999987654    12111100000        000001112378899999999999999


Q ss_pred             cCCCcEEEEeCCC-CEEEEEeeccCCC---------------eeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEE--
Q 022716          189 SADSLVSLWDISE-MLCVRTFTKLEWP---------------VRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQI--  250 (293)
Q Consensus       189 s~d~~i~iwd~~~-~~~~~~~~~~~~~---------------v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~--  250 (293)
                      +. +.|++||++. +.++..+..|...               +..++|+|++++|++|+.|+.|++||+.+++.+...  
T Consensus       304 ~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~  382 (447)
T 3dw8_B          304 DY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEAS  382 (447)
T ss_dssp             ES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECC
T ss_pred             eC-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeec
Confidence            99 9999999986 7777777777532               334999999999999999999999999998876422  


Q ss_pred             -------------------------------ecCCCcceeEECCCCCeEEEEEcCC
Q 022716          251 -------------------------------PCRAAMNSVEWNPKYNLLAYAGDDK  275 (293)
Q Consensus       251 -------------------------------~~~~~i~~~~~sp~~~~la~~~~d~  275 (293)
                                                     .....|..++|||++++||+++.++
T Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~  438 (447)
T 3dw8_B          383 RENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN  438 (447)
T ss_dssp             STTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC
T ss_pred             ccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce
Confidence                                           1234577899999999999998764

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.5e-34  Score=247.94  Aligned_cols=243  Identities=16%  Similarity=0.175  Sum_probs=189.4

Q ss_pred             CccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCcee---------EEEeeC--CcCCeeEEE--EcCCCCCEEEE
Q 022716           18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVK---------DIELRG--HADSVDQLC--WDPKHADLIAT   84 (293)
Q Consensus        18 ~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~---------~~~~~~--h~~~i~~~~--~~~~~~~~l~s   84 (293)
                      +|...|.+++|+|++++|++|+.||+|++||++....+...         .+.+..  +...+.++.  ++++ +.+|++
T Consensus       109 ~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~  187 (437)
T 3gre_A          109 DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEE-KSLLVA  187 (437)
T ss_dssp             ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSS-CEEEEE
T ss_pred             cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCC-CCEEEE
Confidence            69999999999999999999999999999998521011111         111111  445566665  3454 568999


Q ss_pred             EeCCCeEEEEeCCCCeeeeeeee---cCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCC
Q 022716           85 ASGDKTVRLWDARSGKCSQQAEL---SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTG  161 (293)
Q Consensus        85 ~~~d~~i~vwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~  161 (293)
                      ++.|+.|++||++++++...+..   ...+.+++|+|++++|++++.|+.|++||++...++.....             
T Consensus       188 ~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-------------  254 (437)
T 3gre_A          188 LTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSF-------------  254 (437)
T ss_dssp             EETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBC-------------
T ss_pred             EeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEec-------------
Confidence            99999999999999988877764   56788999999999999999999999999998776654322             


Q ss_pred             CEEEEecCCCCEEEEE----ECCCCCEEEEecCCCcEEEEeCCCCEEEEEeecc--------------------------
Q 022716          162 EMFFLTTGNAGCYCIA----IDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL--------------------------  211 (293)
Q Consensus       162 ~~~~~~~~~~~~~~~~----~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~--------------------------  211 (293)
                            .+...+.+++    ++|++.+|++|+.|+.|++||++++.++..+.+|                          
T Consensus       255 ------~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  328 (437)
T 3gre_A          255 ------GDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRS  328 (437)
T ss_dssp             ------TTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCS
T ss_pred             ------CCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceeccccc
Confidence                  1223345563    4467889999999999999999999888877644                          


Q ss_pred             CCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEe--------------------------------------cC
Q 022716          212 EWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP--------------------------------------CR  253 (293)
Q Consensus       212 ~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~--------------------------------------~~  253 (293)
                      ..+|.+++|+ ++++|++|+.|+.|++||+.+++.+..+.                                      +.
T Consensus       329 ~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  407 (437)
T 3gre_A          329 LNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHH  407 (437)
T ss_dssp             GGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------C
T ss_pred             CCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccc
Confidence            3457888888 77999999999999999999887554443                                      56


Q ss_pred             CCcceeEECCC--CCeEEEEEcCCCCCCCCcceEEEEe
Q 022716          254 AAMNSVEWNPK--YNLLAYAGDDKNKYQADEGVFRIYG  289 (293)
Q Consensus       254 ~~i~~~~~sp~--~~~la~~~~d~~~~~~~~~~~~~~~  289 (293)
                      ..|++++|+++  +.+|++|+.|        |.+|||+
T Consensus       408 ~~I~~i~~~~~~~~~~l~s~~~d--------G~I~iw~  437 (437)
T 3gre_A          408 DIINSISTCEVDETPLLVACDNS--------GLIGIFQ  437 (437)
T ss_dssp             CCEEEEEEEESSSSEEEEEEETT--------SCEEEEC
T ss_pred             cceeeEeeeccCCceEEEEEcCC--------ceEEEeC
Confidence            78999999998  7799999988        5667764

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=7e-32  Score=224.96  Aligned_cols=226  Identities=24%  Similarity=0.369  Sum_probs=189.6

Q ss_pred             cceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (293)
Q Consensus        12 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i   91 (293)
                      ..+.+.+|...|.+++|+|++++|++|+.||.|++||+....    ....+.+|...|.++.|+|+ +.+|++++.|+.|
T Consensus        57 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~----~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~d~~i  131 (312)
T 4ery_A           57 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK----CLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESV  131 (312)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC----EEEEEECCSSCEEEEEECSS-SSEEEEEETTSCE
T ss_pred             cchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCc----EEEEEcCCCCCEEEEEEcCC-CCEEEEEeCCCcE
Confidence            345678999999999999999999999999999999997532    23457789999999999997 4689999999999


Q ss_pred             EEEeCCCCeeeeeeee-cCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeec--ccceeeeeEEecCCCEEEEec
Q 022716           92 RLWDARSGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK--FGYEVNEIAWNMTGEMFFLTT  168 (293)
Q Consensus        92 ~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~  168 (293)
                      ++||++++++...+.. ...+.+++|+|+++++++++.|+.+++||+++.+......  ....+..+.|+|.+..+....
T Consensus       132 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  211 (312)
T 4ery_A          132 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT  211 (312)
T ss_dssp             EEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEE
T ss_pred             EEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEc
Confidence            9999999887776654 4567789999999999999999999999999877665543  344678889999888776655


Q ss_pred             CCCCE------------------------EEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCC
Q 022716          169 GNAGC------------------------YCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTG  224 (293)
Q Consensus       169 ~~~~~------------------------~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~  224 (293)
                      .+..+                        ......+++.++++|+.||.|++||+++++.+..+.+|...|.+++|+|++
T Consensus       212 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~  291 (312)
T 4ery_A          212 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE  291 (312)
T ss_dssp             TTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSS
T ss_pred             CCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcC
Confidence            43221                        122234678899999999999999999999999999999999999999999


Q ss_pred             CEEEEec--CCCcEEEEEcC
Q 022716          225 DYIASAS--EDLFIDISNVH  242 (293)
Q Consensus       225 ~~l~s~s--~d~~i~iw~~~  242 (293)
                      ++|++++  .|+.|++|+..
T Consensus       292 ~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          292 NIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             SEEEEEECTTTCCEEEEECC
T ss_pred             CceEEEEccCCccEEEecCC
Confidence            9999987  69999999863

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.3e-32  Score=232.75  Aligned_cols=226  Identities=19%  Similarity=0.232  Sum_probs=178.6

Q ss_pred             ceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEE
Q 022716           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (293)
Q Consensus        13 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~   92 (293)
                      .+.+.+|...|.+++|+|++.+|++|+.|++|++||+....    ....+.+|...|.+++|+|++ .+|++++.|+.|+
T Consensus        69 ~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~----~~~~~~~h~~~v~~v~~sp~~-~~l~s~~~d~~i~  143 (343)
T 2xzm_R           69 HKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGT----TYKRFVGHQSEVYSVAFSPDN-RQILSAGAEREIK  143 (343)
T ss_dssp             EEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSC----EEEEEECCCSCEEEEEECSST-TEEEEEETTSCEE
T ss_pred             cchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCc----EEEEEcCCCCcEEEEEECCCC-CEEEEEcCCCEEE
Confidence            45678999999999999999999999999999999997531    234578999999999999974 6899999999999


Q ss_pred             EEeCCCCeeeeee---eecCceEEEEEcCCC----------CEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEec
Q 022716           93 LWDARSGKCSQQA---ELSGENINITYKPDG----------THIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNM  159 (293)
Q Consensus        93 vwd~~~~~~~~~~---~~~~~~~~~~~~~~~----------~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~  159 (293)
                      +||+.........   .....+.+++|+|++          .++++++.|++|++||.+.........+...+..+.|+|
T Consensus       144 ~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~s~  223 (343)
T 2xzm_R          144 LWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISP  223 (343)
T ss_dssp             EEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEEECCSSCEEEEEECT
T ss_pred             EEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCceeEEEcCccccceEEEECC
Confidence            9999754332222   234457789999987          789999999999999954432222334566789999999


Q ss_pred             CCCEEEEecC---------------------CCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEE--Eee-------
Q 022716          160 TGEMFFLTTG---------------------NAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVR--TFT-------  209 (293)
Q Consensus       160 ~~~~~~~~~~---------------------~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~--~~~-------  209 (293)
                      .+..+...+.                     ...+.+++|+|++.++++| .|+.|++||+.++....  .+.       
T Consensus       224 ~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~  302 (343)
T 2xzm_R          224 NGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKA  302 (343)
T ss_dssp             TSSEEEEEETTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGB
T ss_pred             CCCEEEEEcCCCeEEEEECCCCcccceeecCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhh
Confidence            8876654332                     2347899999999988765 57789999997654322  332       


Q ss_pred             ----ccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCC
Q 022716          210 ----KLEWPVRTISFSHTGDYIASASEDLFIDISNVHTG  244 (293)
Q Consensus       210 ----~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~  244 (293)
                          +|...|.+++|+|+|++|++|+.|+.|++|++.++
T Consensus       303 ~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g  341 (343)
T 2xzm_R          303 EGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS  341 (343)
T ss_dssp             TTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred             hhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence                56778999999999999999999999999998654

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1.2e-32  Score=237.60  Aligned_cols=244  Identities=15%  Similarity=0.178  Sum_probs=192.7

Q ss_pred             cEEEEEECCCCCeE-EEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCC-
Q 022716           22 KVHSVAWNCTGTKL-ASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG-   99 (293)
Q Consensus        22 ~v~~l~~s~~~~~l-~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~-   99 (293)
                      ....++++|+...+ ++|+.||.|++|++............+.+|...|.+++|+|.+..+|++|+.|+.|++||+.++ 
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~  115 (402)
T 2aq5_A           36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG  115 (402)
T ss_dssp             SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred             CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence            34468888877544 4688999999999864321111112367899999999999955689999999999999999887 


Q ss_pred             ------eeeeeee-ecCceEEEEEcCCC-CEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCC
Q 022716          100 ------KCSQQAE-LSGENINITYKPDG-THIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNA  171 (293)
Q Consensus       100 ------~~~~~~~-~~~~~~~~~~~~~~-~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  171 (293)
                            +....+. +...+.+++|+|++ ..|++++.|+.|++||+++.+......                  ...+..
T Consensus       116 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~------------------~~~~~~  177 (402)
T 2aq5_A          116 LVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLG------------------PDVHPD  177 (402)
T ss_dssp             CSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEEC------------------TTTCCS
T ss_pred             CccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEe------------------cCCCCC
Confidence                  3344444 45667889999998 699999999999999998766543321                  023556


Q ss_pred             CEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEe-eccCCC-eeEEEEccCCCEEEEe---cCCCcEEEEEcCCCCE
Q 022716          172 GCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF-TKLEWP-VRTISFSHTGDYIASA---SEDLFIDISNVHTGRT  246 (293)
Q Consensus       172 ~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~-~~~~~~-v~~l~~sp~~~~l~s~---s~d~~i~iw~~~~~~~  246 (293)
                      .+.+++|+|++++|++++.|+.|++||+++++.+..+ ..|... +..++|+|++++|++|   +.|+.|++||..+++.
T Consensus       178 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~  257 (402)
T 2aq5_A          178 TIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEE  257 (402)
T ss_dssp             CEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSS
T ss_pred             ceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccC
Confidence            7889999999999999999999999999999988888 677765 8999999999999999   8999999999988654


Q ss_pred             ---EEEEecCCCcceeEECCCCCeEEEEE-cCCCCCCCCcceEEEEeee
Q 022716          247 ---VHQIPCRAAMNSVEWNPKYNLLAYAG-DDKNKYQADEGVFRIYGFE  291 (293)
Q Consensus       247 ---~~~~~~~~~i~~~~~sp~~~~la~~~-~d~~~~~~~~~~~~~~~~~  291 (293)
                         ...+.+...+.+++|+|++++|++++ .|+        .++||+++
T Consensus       258 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg--------~i~i~d~~  298 (402)
T 2aq5_A          258 PLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDS--------SIRYFEIT  298 (402)
T ss_dssp             CSEEEECCCCSSCEEEEEETTTTEEEEEETTCS--------CEEEEEEC
T ss_pred             CceEEeccCCCceeEEEEcCCCCEEEEEEcCCC--------eEEEEEec
Confidence               33445667899999999999997666 464        55566554

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=2.3e-31  Score=232.54  Aligned_cols=260  Identities=20%  Similarity=0.333  Sum_probs=209.4

Q ss_pred             cceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (293)
Q Consensus        12 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i   91 (293)
                      ..+.+.+|...|.+++|+  ++.|++|+.||+|++||+...    .....+.+|...|.++.+++   ..+++|+.|+.|
T Consensus       151 ~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~----~~~~~~~~h~~~v~~~~~~~---~~l~s~s~dg~i  221 (445)
T 2ovr_B          151 CLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETG----ECIHTLYGHTSTVRCMHLHE---KRVVSGSRDATL  221 (445)
T ss_dssp             EEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTT----EEEEEECCCSSCEEEEEEET---TEEEEEETTSEE
T ss_pred             EEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcC----cEEEEECCCCCcEEEEEecC---CEEEEEeCCCEE
Confidence            346678999999999997  679999999999999999753    23345778999999999963   579999999999


Q ss_pred             EEEeCCCCeeeeeeee-cCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeec-ccceeeeeEEecCCCEEEEec-
Q 022716           92 RLWDARSGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTT-  168 (293)
Q Consensus        92 ~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~-  168 (293)
                      ++||+.++++...+.. ...+.++.+  +++.+++++.|+.+++||+++.++..... +...+..+.|  .+..+...+ 
T Consensus       222 ~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~  297 (445)
T 2ovr_B          222 RVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSL  297 (445)
T ss_dssp             EEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEET
T ss_pred             EEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeC
Confidence            9999999888776654 445667777  78899999999999999999887766554 3445666666  333333222 


Q ss_pred             --------------------CCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeec---cCCCeeEEEEccCCC
Q 022716          169 --------------------GNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK---LEWPVRTISFSHTGD  225 (293)
Q Consensus       169 --------------------~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~---~~~~v~~l~~sp~~~  225 (293)
                                          +...+.++.+  +++++++|+.||.|++||+++++.+..+..   |..+|.+++|+  ++
T Consensus       298 d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~  373 (445)
T 2ovr_B          298 DTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KN  373 (445)
T ss_dssp             TSCEEEEETTTCCEEEEECCCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SS
T ss_pred             CCeEEEEECCCCCEEEEEcCCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CC
Confidence                                2233444444  678999999999999999999988888876   77899999995  68


Q ss_pred             EEEEecCCCcEEEEEcCCCCEEEEE------ecCCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeeec
Q 022716          226 YIASASEDLFIDISNVHTGRTVHQI------PCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN  292 (293)
Q Consensus       226 ~l~s~s~d~~i~iw~~~~~~~~~~~------~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~~  292 (293)
                      +|++|+.|+.|++||+.+++.+..+      .+...|.+++|+|++.++|+|+.|+..    +..+.||+|+.
T Consensus       374 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~----~~~l~v~df~~  442 (445)
T 2ovr_B          374 FVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTE----ETKLLVLDFDV  442 (445)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSS----CCEEEEEECCC
T ss_pred             EEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCC----ccEEEEEECCC
Confidence            9999999999999999999988877      345679999999999999999998752    35689999874

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=2.9e-31  Score=221.05  Aligned_cols=244  Identities=18%  Similarity=0.273  Sum_probs=194.0

Q ss_pred             ecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEe
Q 022716           16 YTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWD   95 (293)
Q Consensus        16 ~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd   95 (293)
                      +.+|...|.+++|+|++++|++|+.||+|++|++...    .....+.+|...+.++.+.+   .++++++.++.+++|+
T Consensus        63 ~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~----~~~~~~~~h~~~~~~~~~~~---~~l~s~~~~~~~~~~~  135 (318)
T 4ggc_A           63 MEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ----KRLRNMTSHSARVGSLSWNS---YILSSGSRSGHIHHHD  135 (318)
T ss_dssp             CCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTT----EEEEEEECCSSCEEEEEEET---TEEEEEETTSEEEEEE
T ss_pred             ecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCc----eeEEEecCccceEEEeecCC---CEEEEEecCCceEeee
Confidence            3478889999999999999999999999999999753    23345778999888877653   5899999999999999


Q ss_pred             CCCCeee-eeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCE
Q 022716           96 ARSGKCS-QQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGC  173 (293)
Q Consensus        96 ~~~~~~~-~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  173 (293)
                      ....... .... +...+..+.+.++++++++++.|+.+++||+++.+......                .........+
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----------------~~~~~~~~~v  199 (318)
T 4ggc_A          136 VRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPL----------------QTFTQHQGAV  199 (318)
T ss_dssp             TTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCS----------------EEECCCCSCE
T ss_pred             cCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccce----------------eeecccCCce
Confidence            8766432 3333 34566788999999999999999999999998754322111                1122344567


Q ss_pred             EEEEECCCCCE---EEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEe--cCCCcEEEEEcCCCCEEE
Q 022716          174 YCIAIDPMGRY---FAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASA--SEDLFIDISNVHTGRTVH  248 (293)
Q Consensus       174 ~~~~~~~~~~~---l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~--s~d~~i~iw~~~~~~~~~  248 (293)
                      .++++.|++..   +++++.+++|++||.+....... ..+...+..+.|+|++..++++  +.|+.|++||+.+++.+.
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~  278 (318)
T 4ggc_A          200 KAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA-VDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVA  278 (318)
T ss_dssp             EEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEE-EECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEE
T ss_pred             EEEEecCCCCcEEEEEecCCCCEEEEEeccccccccc-ccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEE
Confidence            77888887653   45778899999999988876654 4566789999999999988665  489999999999999998


Q ss_pred             EEe-cCCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeee
Q 022716          249 QIP-CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE  291 (293)
Q Consensus       249 ~~~-~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~  291 (293)
                      .+. |..+|++++|+|++++||+||.|        +++|||++.
T Consensus       279 ~l~gH~~~V~~l~~spdg~~l~S~s~D--------~~v~iWd~~  314 (318)
T 4ggc_A          279 ELKGHTSRVLSLTMSPDGATVASAAAD--------ETLRLWRCF  314 (318)
T ss_dssp             EECCCSSCEEEEEECTTSSCEEEEETT--------TEEEEECCS
T ss_pred             EEcCCCCCEEEEEEcCCCCEEEEEecC--------CeEEEEECC
Confidence            886 56789999999999999999988        578888864

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=2.2e-32  Score=247.57  Aligned_cols=240  Identities=14%  Similarity=0.212  Sum_probs=200.4

Q ss_pred             cCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCC-eeEEEEcC--CCCCEEEEEeCCCeEEE
Q 022716           17 TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADS-VDQLCWDP--KHADLIATASGDKTVRL   93 (293)
Q Consensus        17 ~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~-i~~~~~~~--~~~~~l~s~~~d~~i~v   93 (293)
                      ..|.+.|.+++|+|+|++|++++ |+.|++|++............+.+|... |.+++|+|  + +.+|++++.|+.|++
T Consensus        15 ~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~-~~~l~s~~~dg~v~v   92 (615)
T 1pgu_A           15 STQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKG-SQYLCSGDESGKVIV   92 (615)
T ss_dssp             CCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTT-CCEEEEEETTSEEEE
T ss_pred             CCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCC-CCEEEEecCCCEEEE
Confidence            36889999999999999999998 8999999997431111234467899999 99999999  6 468999999999999


Q ss_pred             EeCCCC--------eeeeeee-ecCceEEEEEcCCCCEEEEEeCC----CeEEEEEccccceeeeecccceeeeeEEecC
Q 022716           94 WDARSG--------KCSQQAE-LSGENINITYKPDGTHIAVGNRD----DELTILDVRKFKPIHRRKFGYEVNEIAWNMT  160 (293)
Q Consensus        94 wd~~~~--------~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d----~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~  160 (293)
                      ||+.++        .....+. ....+.+++|+|+++++++++.+    +.+.+||..  ....                
T Consensus        93 w~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~--~~~~----------------  154 (615)
T 1pgu_A           93 WGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSG--NSLG----------------  154 (615)
T ss_dssp             EEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTC--CEEE----------------
T ss_pred             EeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECC--Ccce----------------
Confidence            999754        3344443 45677889999999999999987    688888832  2221                


Q ss_pred             CCEEEEecCCCCEEEEEECCCCC-EEEEecCCCcEEEEeCCCCEEEEEeeccCC---CeeEEEEccC-CCEEEEecCCCc
Q 022716          161 GEMFFLTTGNAGCYCIAIDPMGR-YFAVGSADSLVSLWDISEMLCVRTFTKLEW---PVRTISFSHT-GDYIASASEDLF  235 (293)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~-~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~---~v~~l~~sp~-~~~l~s~s~d~~  235 (293)
                          .+..+...+.+++|+|+++ .+++++.|+.|++||+++++.+..+..|..   +|.+++|+|+ +++|++++.|+.
T Consensus       155 ----~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~  230 (615)
T 1pgu_A          155 ----EVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRK  230 (615)
T ss_dssp             ----ECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCC
T ss_pred             ----eeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCe
Confidence                1224566788999999998 899999999999999999999999999998   9999999999 999999999999


Q ss_pred             EEEEEcCCCCEEEEE-----ecCCCcceeEECCCCCeEEEEEcCCCCCCCC
Q 022716          236 IDISNVHTGRTVHQI-----PCRAAMNSVEWNPKYNLLAYAGDDKNKYQAD  281 (293)
Q Consensus       236 i~iw~~~~~~~~~~~-----~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~  281 (293)
                      |++||+.+++.+..+     .+..+|.+++|+ ++++|++++.|+.+++|+
T Consensus       231 i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd  280 (615)
T 1pgu_A          231 ISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWD  280 (615)
T ss_dssp             EEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEE
T ss_pred             EEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEE
Confidence            999999999998888     667789999999 999999999886444443

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=7.7e-32  Score=232.63  Aligned_cols=239  Identities=17%  Similarity=0.299  Sum_probs=192.9

Q ss_pred             Ccccc--EEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEe
Q 022716           18 GHKKK--VHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWD   95 (293)
Q Consensus        18 ~h~~~--v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd   95 (293)
                      +|...  +.++.|++  ..+++++.||.|++|++...   .........|...|.+++|+|+ +.+|++|+.||.|++||
T Consensus        89 ~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~---~~~~~~~~~~~~~v~~v~~s~~-~~~l~~~~~dg~i~iwd  162 (401)
T 4aez_A           89 GIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSG---SVSALAETDESTYVASVKWSHD-GSFLSVGLGNGLVDIYD  162 (401)
T ss_dssp             TCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTC---CEEEEEECCTTCCEEEEEECTT-SSEEEEEETTSCEEEEE
T ss_pred             CCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCC---cEeEeeecCCCCCEEEEEECCC-CCEEEEECCCCeEEEEE
Confidence            66654  44466664  56889999999999999753   2222223348899999999996 57899999999999999


Q ss_pred             CCCCeeeeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEE
Q 022716           96 ARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCY  174 (293)
Q Consensus        96 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  174 (293)
                      +.+++....+. +...+.+++|  ++..+++++.|+.+++||++.....                   ...+..+...+.
T Consensus       163 ~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~-------------------~~~~~~~~~~v~  221 (401)
T 4aez_A          163 VESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQ-------------------IGTLQGHSSEVC  221 (401)
T ss_dssp             TTTCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCE-------------------EEEEECCSSCEE
T ss_pred             CcCCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcce-------------------eeEEcCCCCCee
Confidence            99988777665 4456677888  4679999999999999999843211                   112334567788


Q ss_pred             EEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCC-EEEEec--CCCcEEEEEcCCCCEEEEEe
Q 022716          175 CIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGD-YIASAS--EDLFIDISNVHTGRTVHQIP  251 (293)
Q Consensus       175 ~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~-~l~s~s--~d~~i~iw~~~~~~~~~~~~  251 (293)
                      +++++|++++|++|+.|+.|++||++++..+..+..|..+|.+++|+|++. ++++|+  .|+.|++||+.+++.+..+.
T Consensus       222 ~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~  301 (401)
T 4aez_A          222 GLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD  301 (401)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE
T ss_pred             EEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe
Confidence            999999999999999999999999999988888989999999999999764 566655  79999999999999999888


Q ss_pred             cCCCcceeEECCCCCeEEEEE--cCCCCCCCCcceEEEEeee
Q 022716          252 CRAAMNSVEWNPKYNLLAYAG--DDKNKYQADEGVFRIYGFE  291 (293)
Q Consensus       252 ~~~~i~~~~~sp~~~~la~~~--~d~~~~~~~~~~~~~~~~~  291 (293)
                      +...+.+++|+|++++|++++  .|        +.++||+++
T Consensus       302 ~~~~v~~~~~s~~~~~l~~~~g~~d--------g~i~v~~~~  335 (401)
T 4aez_A          302 AGSQVTSLIWSPHSKEIMSTHGFPD--------NNLSIWSYS  335 (401)
T ss_dssp             CSSCEEEEEECSSSSEEEEEECTTT--------CEEEEEEEE
T ss_pred             CCCcEEEEEECCCCCeEEEEeecCC--------CcEEEEecC
Confidence            888999999999999999965  55        456666654

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.5e-32  Score=226.52  Aligned_cols=224  Identities=19%  Similarity=0.277  Sum_probs=165.0

Q ss_pred             CccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCC---CceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEE
Q 022716           18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGH---GKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLW   94 (293)
Q Consensus        18 ~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~---~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vw   94 (293)
                      +|...|.+++|+|++++|++|+.|++|++|++.....   .......+.+|...|.+++|+|+ +.+|++|+.|+.|++|
T Consensus        56 ~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~-g~~las~s~D~~v~iw  134 (330)
T 2hes_X           56 AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSND-GYYLATCSRDKSVWIW  134 (330)
T ss_dssp             CCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTT-SCEEEEEETTSCEEEE
T ss_pred             CccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCC-CCEEEEEeCCCEEEEE
Confidence            3999999999999999999999999999999853211   11223457799999999999997 5789999999999999


Q ss_pred             eCCCC----eeeeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEcccc--ceeeee-cccceeeeeEEecC--CCEE
Q 022716           95 DARSG----KCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKF--KPIHRR-KFGYEVNEIAWNMT--GEMF  164 (293)
Q Consensus        95 d~~~~----~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~--~~~~~~-~~~~~~~~v~~~~~--~~~~  164 (293)
                      |++..    ++...+. +...+.+++|+|++.+|++++.|++|++||++..  .++... .+...+..+.|++.  +..+
T Consensus       135 d~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l  214 (330)
T 2hes_X          135 ETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRL  214 (330)
T ss_dssp             ECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEE
T ss_pred             eccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEE
Confidence            99432    3344443 3456788999999999999999999999998764  333332 24556777777776  3222


Q ss_pred             EEe------------------------------cCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCE--EEEE-eecc
Q 022716          165 FLT------------------------------TGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEML--CVRT-FTKL  211 (293)
Q Consensus       165 ~~~------------------------------~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~--~~~~-~~~~  211 (293)
                      ...                              .+...+.+++|++++ .|++++.||.|++||..++.  .... ...|
T Consensus       215 ~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h  293 (330)
T 2hes_X          215 CSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCH  293 (330)
T ss_dssp             EEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTT
T ss_pred             EEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEecccccc
Confidence            211                              144568889999655 78999999999999988763  2322 3567


Q ss_pred             CC-CeeEEEEcc--CCCEEEEecCCCcEEEEEcCC
Q 022716          212 EW-PVRTISFSH--TGDYIASASEDLFIDISNVHT  243 (293)
Q Consensus       212 ~~-~v~~l~~sp--~~~~l~s~s~d~~i~iw~~~~  243 (293)
                      .. .|.+++|+|  ++++||+|+.|+.|++|++.+
T Consensus       294 ~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          294 GVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             TTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred             ccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence            76 899999999  789999999999999999864

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=6.5e-33  Score=237.77  Aligned_cols=218  Identities=24%  Similarity=0.334  Sum_probs=175.5

Q ss_pred             ceeecCccccEEEEEECCCC-CeEEEEeCCCcEEEeecCCCCCCceeEE---EeeCCcCCeeEEEEcCCCCCEEEEEeCC
Q 022716           13 SREYTGHKKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHGKVKDI---ELRGHADSVDQLCWDPKHADLIATASGD   88 (293)
Q Consensus        13 ~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~v~iw~~~~~~~~~~~~~---~~~~h~~~i~~~~~~~~~~~~l~s~~~d   88 (293)
                      .+.+.+|.+.|.+++|+|++ ..|++|+.|++|++||+....  .....   ...+|...|.++.+++.+..+|++|+.|
T Consensus       150 ~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~--~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D  227 (380)
T 3iz6_a          150 SRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQ--RISIFGSEFPSGHTADVLSLSINSLNANMFISGSCD  227 (380)
T ss_dssp             CCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCC--EEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETT
T ss_pred             eeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCc--EEEEeecccCCCCccCeEEEEeecCCCCEEEEEECC
Confidence            35678999999999999975 579999999999999997532  11111   0157999999999988667899999999


Q ss_pred             CeEEEEeCCC-Ceeeeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEE
Q 022716           89 KTVRLWDARS-GKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFL  166 (293)
Q Consensus        89 ~~i~vwd~~~-~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  166 (293)
                      +.|++||++. +++...+. +.+.+.+++|+|++++|++++.|+++++||+++...+..........             
T Consensus       228 ~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~-------------  294 (380)
T 3iz6_a          228 TTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRN-------------  294 (380)
T ss_dssp             SCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSS-------------
T ss_pred             CeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEeccccccc-------------
Confidence            9999999974 34444444 45667899999999999999999999999999876554432110000             


Q ss_pred             ecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEe----eccCCCeeEEEEccCCCEEEEecCCCcEEEEEcC
Q 022716          167 TTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF----TKLEWPVRTISFSHTGDYIASASEDLFIDISNVH  242 (293)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~----~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~  242 (293)
                      ......+.+++|+|+++++++|+.||.|++||+..++.+..+    .+|..+|.+++|+|+|++|++|+.|+.|++|++.
T Consensus       295 ~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~  374 (380)
T 3iz6_a          295 DNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFS  374 (380)
T ss_dssp             CCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECC
T ss_pred             ccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecC
Confidence            011123678999999999999999999999999988877766    5788999999999999999999999999999987


Q ss_pred             CCC
Q 022716          243 TGR  245 (293)
Q Consensus       243 ~~~  245 (293)
                      ..+
T Consensus       375 ~~~  377 (380)
T 3iz6_a          375 GHR  377 (380)
T ss_dssp             SSS
T ss_pred             CCc
Confidence            654

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.7e-31  Score=224.48  Aligned_cols=234  Identities=19%  Similarity=0.272  Sum_probs=202.0

Q ss_pred             eeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEE
Q 022716           57 VKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTIL  135 (293)
Q Consensus        57 ~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~  135 (293)
                      .....+.+|...|.+++|+|+ +.+|++++.|+.|++||+.+++....+. +...+.+++|+|++++|++++.|+.|++|
T Consensus        23 ~~~~~l~~h~~~v~~~~~s~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw  101 (369)
T 3zwl_B           23 MKAIKLTGHERPLTQVKYNKE-GDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLW  101 (369)
T ss_dssp             EEEEEEECCSSCEEEEEECTT-SCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEE
T ss_pred             cccEEEEEeeceEEEEEEcCC-CCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence            345678899999999999996 5689999999999999999988877766 45667899999999999999999999999


Q ss_pred             EccccceeeeecccceeeeeEEecCCCEEEEecCC---------------------------------------CCEEEE
Q 022716          136 DVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGN---------------------------------------AGCYCI  176 (293)
Q Consensus       136 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---------------------------------------~~~~~~  176 (293)
                      |+++.+..........+..+.|++.+..+.....+                                       ..+.++
T Consensus       102 d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (369)
T 3zwl_B          102 DVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVA  181 (369)
T ss_dssp             ETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEE
T ss_pred             ECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEE
Confidence            99998888887788889999999988876654432                                       168889


Q ss_pred             EECCCCCEEEEecCCCcEEEEeCCC-CEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEecCCC
Q 022716          177 AIDPMGRYFAVGSADSLVSLWDISE-MLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAA  255 (293)
Q Consensus       177 ~~~~~~~~l~~gs~d~~i~iwd~~~-~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~  255 (293)
                      +++|+++++++++.||.|++||+++ ...+..+..|..+|.+++|+|++++|++++.|+.|++||+.+++.+..+....+
T Consensus       182 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~  261 (369)
T 3zwl_B          182 GWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCP  261 (369)
T ss_dssp             EECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSC
T ss_pred             EEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecCCCC
Confidence            9999999999999999999999998 788888999999999999999999999999999999999999999988888889


Q ss_pred             cceeEECCCCCeEEEEEcCCCCCCCCc------ceEEEEeee
Q 022716          256 MNSVEWNPKYNLLAYAGDDKNKYQADE------GVFRIYGFE  291 (293)
Q Consensus       256 i~~~~~sp~~~~la~~~~d~~~~~~~~------~~~~~~~~~  291 (293)
                      +..++|+|++.++++++.++...++..      ..+++|+++
T Consensus       262 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~  303 (369)
T 3zwl_B          262 LNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKI  303 (369)
T ss_dssp             EEEEEECSSSSEEEEEECCC-------------CEEEEEETT
T ss_pred             ceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecC
Confidence            999999999999999998875443221      257777754

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.2e-33  Score=237.38  Aligned_cols=228  Identities=9%  Similarity=0.079  Sum_probs=174.2

Q ss_pred             EECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCC---------
Q 022716           27 AWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDAR---------   97 (293)
Q Consensus        27 ~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~---------   97 (293)
                      .+.++++.|++|+.||+|++||+....  ....  +.  ...|.++.++|.    +++++.|+.|++|+..         
T Consensus        43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~--~~~~--~~--~~~v~~~~~~~~----~~s~s~D~~i~~w~~~~~~~~~~~~  112 (343)
T 3lrv_A           43 SMYYDKWVCMCRCEDGALHFTQLKDSK--TITT--IT--TPNPRTGGEHPA----IISRGPCNRLLLLYPGNQITILDSK  112 (343)
T ss_dssp             SSSEEEEEEEEEEETTEEEEEEESSSS--CEEE--EE--EECCCTTCCCCS----EEEECSTTEEEEEETTTEEEEEETT
T ss_pred             hhcCCCCEEEEECCCCcEEEEECCCCc--EEEE--Ee--cCCceeeeeCCc----eEEecCCCeEEEEEccCceEEeecC
Confidence            445688899999999999999997542  2222  22  456777778775    8899999999999765         


Q ss_pred             CCeeeeeee--ecCceEEEEEcC--CCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCE
Q 022716           98 SGKCSQQAE--LSGENINITYKP--DGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGC  173 (293)
Q Consensus        98 ~~~~~~~~~--~~~~~~~~~~~~--~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  173 (293)
                      +++......  ..+.+.+++++|  +++++++++.|+++++||+++.+......                   ..+...+
T Consensus       113 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~-------------------~~~~~~i  173 (343)
T 3lrv_A          113 TNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHS-------------------AKSDVEY  173 (343)
T ss_dssp             TCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEEC-------------------CCSSCCC
T ss_pred             CcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-------------------cCCCCce
Confidence            333333332  235688999999  99999999999999999998766533211                   1123357


Q ss_pred             EEEEECCCCCEEEEecCCCcEEEEeCCCCEEE-EEeec-cCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEe
Q 022716          174 YCIAIDPMGRYFAVGSADSLVSLWDISEMLCV-RTFTK-LEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP  251 (293)
Q Consensus       174 ~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~-~~~~~-~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~  251 (293)
                      .+++|+|++.++++|+.||.|++||++++..+ ..+.. |..+|.+++|+|++.+|++++.| .|++||+.+++.++.+.
T Consensus       174 ~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~-~v~iwd~~~~~~~~~~~  252 (343)
T 3lrv_A          174 SSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQ-TVVCFDLRKDVGTLAYP  252 (343)
T ss_dssp             CEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEESS-BEEEEETTSSTTCBSSC
T ss_pred             EEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeCC-eEEEEEcCCCCcceeec
Confidence            78999999999999999999999999988766 67777 99999999999999999999955 99999999886554332


Q ss_pred             ----cCCCcc--eeEECCCCCeEEEEEc-CCCCCCCCcceEEEEeeec
Q 022716          252 ----CRAAMN--SVEWNPKYNLLAYAGD-DKNKYQADEGVFRIYGFEN  292 (293)
Q Consensus       252 ----~~~~i~--~~~~sp~~~~la~~~~-d~~~~~~~~~~~~~~~~~~  292 (293)
                          +..++.  +++|+|++++|++++. |        +.++||++++
T Consensus       253 ~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d--------~~i~v~~~~~  292 (343)
T 3lrv_A          253 TYTIPEFKTGTVTYDIDDSGKNMIAYSNES--------NSLTIYKFDK  292 (343)
T ss_dssp             CCBC-----CCEEEEECTTSSEEEEEETTT--------TEEEEEEECT
T ss_pred             ccccccccccceEEEECCCCCEEEEecCCC--------CcEEEEEEcc
Confidence                112344  5999999999999987 5        4577777753

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.3e-31  Score=232.07  Aligned_cols=235  Identities=13%  Similarity=0.070  Sum_probs=186.4

Q ss_pred             ecCccccEEEEEECCCCCeE-EEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEE
Q 022716           16 YTGHKKKVHSVAWNCTGTKL-ASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLW   94 (293)
Q Consensus        16 ~~~h~~~v~~l~~s~~~~~l-~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vw   94 (293)
                      ..+|.+.|.+++|+|++++| ++|+.||.|++||+..........+....|...|.+++|+|++ .+|++++.|+.+++|
T Consensus        98 ~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~~g~v~~~  176 (450)
T 2vdu_B           98 APPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDD-TTVIIADKFGDVYSI  176 (450)
T ss_dssp             --CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTS-SEEEEEETTSEEEEE
T ss_pred             CCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCC-CEEEEEeCCCcEEEE
Confidence            34677899999999999996 8999999999999972111233333334677899999999974 688999999999999


Q ss_pred             eCCCCeeee----eee-ecCceEEEEEcCC---CCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEE
Q 022716           95 DARSGKCSQ----QAE-LSGENINITYKPD---GTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFL  166 (293)
Q Consensus        95 d~~~~~~~~----~~~-~~~~~~~~~~~~~---~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  166 (293)
                      ++.++....    .+. +...+.+++|+|+   +++|++++.|+.|++||+++.......                   .
T Consensus       177 ~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~-------------------~  237 (450)
T 2vdu_B          177 DINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKW-------------------L  237 (450)
T ss_dssp             ETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEE-------------------C
T ss_pred             ecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeee-------------------e
Confidence            998776442    333 4567788999999   999999999999999999876543321                   2


Q ss_pred             ecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeec-------------------------cCCCeeEEEEc
Q 022716          167 TTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK-------------------------LEWPVRTISFS  221 (293)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~-------------------------~~~~v~~l~~s  221 (293)
                      ..+...+.+++|+ ++++|++|+.|++|++||+++++++..+..                         ....|..++|+
T Consensus       238 ~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~  316 (450)
T 2vdu_B          238 FGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKS  316 (450)
T ss_dssp             CCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEEC
T ss_pred             cCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEe
Confidence            2355678899999 999999999999999999999988877752                         23578999999


Q ss_pred             cCCCEEEEec-CCCcEEEEEc--CCC---CEEEEEecCCCcceeEECCCCCeEEEEE
Q 022716          222 HTGDYIASAS-EDLFIDISNV--HTG---RTVHQIPCRAAMNSVEWNPKYNLLAYAG  272 (293)
Q Consensus       222 p~~~~l~s~s-~d~~i~iw~~--~~~---~~~~~~~~~~~i~~~~~sp~~~~la~~~  272 (293)
                      |++++|++++ .|+.|++|++  .++   +.+..+.....+.+++|+|++ ++++.+
T Consensus       317 ~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~-~~v~~~  372 (450)
T 2vdu_B          317 KNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFPYNVISLSAHNDE-FQVTLD  372 (450)
T ss_dssp             SSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECSSCEEEEEEETTE-EEEEEC
T ss_pred             CCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccCCceEEEEecCCc-EEEEEe
Confidence            9999999998 8999999999  555   445566666889999999954 444443

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1.2e-31  Score=222.33  Aligned_cols=214  Identities=20%  Similarity=0.215  Sum_probs=168.0

Q ss_pred             cceeecCccccEEEEEECCC--CCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCC-CCEEEEEeCC
Q 022716           12 HSREYTGHKKKVHSVAWNCT--GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKH-ADLIATASGD   88 (293)
Q Consensus        12 ~~~~~~~h~~~v~~l~~s~~--~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~-~~~l~s~~~d   88 (293)
                      ....+.+|.++|.+++|+|+  +++|+||+.||+|++||+......  ....+.+|...|.+++|+|+. +.+|++++.|
T Consensus        45 ~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~--~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d  122 (297)
T 2pm7_B           45 LIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWS--QIAVHAVHSASVNSVQWAPHEYGPMLLVASSD  122 (297)
T ss_dssp             CCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBC--CCEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred             EEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceE--EEEEeecCCCceeEEEeCcCCCCcEEEEEECC
Confidence            34678899999999999864  899999999999999999753211  223467899999999999963 4689999999


Q ss_pred             CeEEEEeCCCCeee--eee-eecCceEEEEEcCC-------------CCEEEEEeCCCeEEEEEccccceeeeeccccee
Q 022716           89 KTVRLWDARSGKCS--QQA-ELSGENINITYKPD-------------GTHIAVGNRDDELTILDVRKFKPIHRRKFGYEV  152 (293)
Q Consensus        89 ~~i~vwd~~~~~~~--~~~-~~~~~~~~~~~~~~-------------~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~  152 (293)
                      +.|++||++++...  ..+ .+...+.+++|+|+             ++.|++|+.|++|++||+++.......      
T Consensus       123 ~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~------  196 (297)
T 2pm7_B          123 GKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVL------  196 (297)
T ss_dssp             SEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEE------
T ss_pred             CcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEE------
Confidence            99999999876321  222 23456778999987             579999999999999998764321100      


Q ss_pred             eeeEEecCCCEEEEecCCCCEEEEEECCCC---CEEEEecCCCcEEEEeCCCCE---EEEEe--eccCCCeeEEEEccCC
Q 022716          153 NEIAWNMTGEMFFLTTGNAGCYCIAIDPMG---RYFAVGSADSLVSLWDISEML---CVRTF--TKLEWPVRTISFSHTG  224 (293)
Q Consensus       153 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~gs~d~~i~iwd~~~~~---~~~~~--~~~~~~v~~l~~sp~~  224 (293)
                                ...+..+...+.+++|+|++   .+|++|+.|++|++||++...   ....+  ..|...|.+++|+|+|
T Consensus       197 ----------~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g  266 (297)
T 2pm7_B          197 ----------ESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSG  266 (297)
T ss_dssp             ----------EEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSS
T ss_pred             ----------EEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCC
Confidence                      01233566788999999984   899999999999999987631   22233  4677899999999999


Q ss_pred             CEEEEecCCCcEEEEEcCC
Q 022716          225 DYIASASEDLFIDISNVHT  243 (293)
Q Consensus       225 ~~l~s~s~d~~i~iw~~~~  243 (293)
                      ++||+++.|+.|++|+...
T Consensus       267 ~~las~~~D~~v~lw~~~~  285 (297)
T 2pm7_B          267 NVLALSGGDNKVTLWKENL  285 (297)
T ss_dssp             CCEEEEETTSCEEEEEECT
T ss_pred             CEEEEEcCCCcEEEEEECC
Confidence            9999999999999999763

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=8.5e-31  Score=220.25  Aligned_cols=219  Identities=19%  Similarity=0.262  Sum_probs=173.1

Q ss_pred             EEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCee-----eeeee-ecCceEEEEEcCCCCEEEEEeCCCeEE
Q 022716           60 IELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKC-----SQQAE-LSGENINITYKPDGTHIAVGNRDDELT  133 (293)
Q Consensus        60 ~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~-----~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~  133 (293)
                      ..|+||.+.|++++|+|+++++|+||+.|++|++||+.+.+.     ...+. +...+.+++|+|+++++++++.|+.++
T Consensus        32 ~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~  111 (340)
T 4aow_A           32 GTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLR  111 (340)
T ss_dssp             EEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             EEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccce
Confidence            358899999999999998778999999999999999876542     22232 345678899999999999999999999


Q ss_pred             EEEccccceeeeec-ccceeeeeEEecCCCEEEEe----------------------cCCCCEEEEEECCCC--CEEEEe
Q 022716          134 ILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLT----------------------TGNAGCYCIAIDPMG--RYFAVG  188 (293)
Q Consensus       134 l~d~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~--~~l~~g  188 (293)
                      +|+........... ....+....+.+.+..++..                      .+...+.++++++++  .+++++
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~  191 (340)
T 4aow_A          112 LWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSC  191 (340)
T ss_dssp             EEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEE
T ss_pred             EEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEE
Confidence            99987765443332 22223333344333322221                      223457788887764  678999


Q ss_pred             cCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEecCCCcceeEECCCCCeE
Q 022716          189 SADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLL  268 (293)
Q Consensus       189 s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~l  268 (293)
                      +.|+.|++||+++++.+..+.+|..+|.+++|+|++++|++|+.|+.|++||+.+.+.+..+.....+.++.|+|++.++
T Consensus       192 ~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~  271 (340)
T 4aow_A          192 GWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWL  271 (340)
T ss_dssp             ETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEE
T ss_pred             cCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCCCCcee
Confidence            99999999999999999999999999999999999999999999999999999999999988888899999999987555


Q ss_pred             EEEEcCCCCCC
Q 022716          269 AYAGDDKNKYQ  279 (293)
Q Consensus       269 a~~~~d~~~~~  279 (293)
                       +++.|+.+++
T Consensus       272 -~~~~d~~i~i  281 (340)
T 4aow_A          272 -CAATGPSIKI  281 (340)
T ss_dssp             -EEEETTEEEE
T ss_pred             -eccCCCEEEE
Confidence             5556654433

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=3.1e-32  Score=232.36  Aligned_cols=226  Identities=14%  Similarity=0.205  Sum_probs=173.2

Q ss_pred             eecCccccEEEEEECCCCCeEEEE-----------eCCCcEEEeecCCCCCCceeEEE------eeCCcCCeeEEEEcCC
Q 022716           15 EYTGHKKKVHSVAWNCTGTKLASG-----------SVDQTARVWHIEPHGHGKVKDIE------LRGHADSVDQLCWDPK   77 (293)
Q Consensus        15 ~~~~h~~~v~~l~~s~~~~~l~s~-----------~~dg~v~iw~~~~~~~~~~~~~~------~~~h~~~i~~~~~~~~   77 (293)
                      .+.+|...|.+++++  ++.+++|           +.|+.+|+|++..... ......      ...+...+..++|+|+
T Consensus        68 ~l~~~~~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~fSpD  144 (365)
T 4h5i_A           68 ALEDNDDSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVND-QLEFLTSVDFDASTNADDYTKLVYISRE  144 (365)
T ss_dssp             ECCTTSCCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTT-EEEEEEEECSSCCCCTTCCEEEEEECTT
T ss_pred             EccCCCCceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCc-eEEEeeeeceeecCCcccCEEEEEEcCC
Confidence            456788889988765  4455554           5678899999865322 111111      1234556889999998


Q ss_pred             CCCE-EEEEeCCCeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeee---cccceee
Q 022716           78 HADL-IATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRR---KFGYEVN  153 (293)
Q Consensus        78 ~~~~-l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~---~~~~~~~  153 (293)
                      +..+ +++++.|++|++||+.++++...++.++.+.+++|+|||+++++++.+ .+.+|+..+.......   .....+.
T Consensus       145 g~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~  223 (365)
T 4h5i_A          145 GTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLS  223 (365)
T ss_dssp             SSCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEE
T ss_pred             CCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEE
Confidence            6443 235557999999999999998888888889999999999999999855 5566666555443322   2345678


Q ss_pred             eeEEecCCCEEEEec-----------------------------CCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEE
Q 022716          154 EIAWNMTGEMFFLTT-----------------------------GNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLC  204 (293)
Q Consensus       154 ~v~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~  204 (293)
                      .+.|+|++..+...+                             +...+.+++|+|++++||+|+.|++|+|||++++++
T Consensus       224 ~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~  303 (365)
T 4h5i_A          224 KINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSM  303 (365)
T ss_dssp             EEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEE
T ss_pred             EEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcE
Confidence            888888776544322                             234588999999999999999999999999999999


Q ss_pred             EEEe-eccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCC
Q 022716          205 VRTF-TKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTG  244 (293)
Q Consensus       205 ~~~~-~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~  244 (293)
                      +.++ .+|..+|++|+|||||++|||||.|++|+||++...
T Consensus       304 ~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          304 SKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             EEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             EEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            8875 689999999999999999999999999999998643

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9e-32  Score=235.62  Aligned_cols=245  Identities=12%  Similarity=0.101  Sum_probs=191.1

Q ss_pred             cccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCC-ceeE---------------------------------------
Q 022716           20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHG-KVKD---------------------------------------   59 (293)
Q Consensus        20 ~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~-~~~~---------------------------------------   59 (293)
                      ..++.+++|+|+|++|+++ .++.|++||+...... ....                                       
T Consensus         4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (450)
T 2vdu_B            4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD   82 (450)
T ss_dssp             ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred             cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence            4588999999999965555 6889999998653200 0000                                       


Q ss_pred             -------------EEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCC--CCeeeeeee---ecCceEEEEEcCCCC
Q 022716           60 -------------IELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDAR--SGKCSQQAE---LSGENINITYKPDGT  121 (293)
Q Consensus        60 -------------~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~--~~~~~~~~~---~~~~~~~~~~~~~~~  121 (293)
                                   ...++|...|.+++|+|++..++++++.|+.|++||+.  ++++...+.   ....+.+++|+|+++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~  162 (450)
T 2vdu_B           83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDT  162 (450)
T ss_dssp             -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSS
T ss_pred             cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCC
Confidence                         01124555799999999864445899999999999998  777666653   346678999999999


Q ss_pred             EEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCC---CCEEEEecCCCcEEEEe
Q 022716          122 HIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPM---GRYFAVGSADSLVSLWD  198 (293)
Q Consensus       122 ~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~gs~d~~i~iwd  198 (293)
                      +|++++.++.+.+|++.+........                ..+..+...+.+++|+|+   +++|++|+.|+.|++||
T Consensus       163 ~l~~~~~~g~v~~~~~~~~~~~~~~~----------------~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd  226 (450)
T 2vdu_B          163 TVIIADKFGDVYSIDINSIPEEKFTQ----------------EPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISH  226 (450)
T ss_dssp             EEEEEETTSEEEEEETTSCCCSSCCC----------------CCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEE
T ss_pred             EEEEEeCCCcEEEEecCCcccccccc----------------eeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEE
Confidence            99999999999999987655332000                011234567889999999   99999999999999999


Q ss_pred             CCCCEEEEE-eeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEec-------------------------
Q 022716          199 ISEMLCVRT-FTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPC-------------------------  252 (293)
Q Consensus       199 ~~~~~~~~~-~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~-------------------------  252 (293)
                      ++++..+.. +.+|..+|.+++|+ ++++|++|+.|+.|++||+.+++.+..+..                         
T Consensus       227 ~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (450)
T 2vdu_B          227 YPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDI  305 (450)
T ss_dssp             ESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------C
T ss_pred             CCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhccccccccccccccc
Confidence            998877766 55899999999999 999999999999999999999998877652                         


Q ss_pred             -CCCcceeEECCCCCeEEEEE-cCCCCCCCCcceEEEEee
Q 022716          253 -RAAMNSVEWNPKYNLLAYAG-DDKNKYQADEGVFRIYGF  290 (293)
Q Consensus       253 -~~~i~~~~~sp~~~~la~~~-~d~~~~~~~~~~~~~~~~  290 (293)
                       ...+.+++|+|++++|++++ .|        +.++||++
T Consensus       306 ~~~~v~~i~~~~~~~~l~~~~~~d--------~~i~iw~~  337 (450)
T 2vdu_B          306 IEFAVSKIIKSKNLPFVAFFVEAT--------KCIIILEM  337 (450)
T ss_dssp             BCCCEEEEEECSSSSEEEEEETTC--------SEEEEEEE
T ss_pred             ceEEEEEEEEeCCCCEEEEEECCC--------CeEEEEEe
Confidence             23578899999999999998 55        45666665

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=4.1e-31  Score=230.40  Aligned_cols=235  Identities=21%  Similarity=0.335  Sum_probs=191.3

Q ss_pred             ceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEE
Q 022716           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (293)
Q Consensus        13 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~   92 (293)
                      ...+.+|.+.|.+++|  +++.|++|+.||+|++||+....    ....+.+|...|.++.|++   ..+++|+.|+.|+
T Consensus       166 ~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~----~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~  236 (435)
T 1p22_A          166 KRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGE----MLNTLIHHCEAVLHLRFNN---GMMVTCSKDRSIA  236 (435)
T ss_dssp             EEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCC----EEEEECCCCSCEEEEECCT---TEEEEEETTSCEE
T ss_pred             EEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCc----EEEEEcCCCCcEEEEEEcC---CEEEEeeCCCcEE
Confidence            4567899999999998  78899999999999999997532    2345678999999999964   4899999999999


Q ss_pred             EEeCCCCeeee---eee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEec
Q 022716           93 LWDARSGKCSQ---QAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTT  168 (293)
Q Consensus        93 vwd~~~~~~~~---~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  168 (293)
                      +||+.++....   ... +...+.++++  +++++++++.|+.+++||+++.+.....                    ..
T Consensus       237 vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~--------------------~~  294 (435)
T 1p22_A          237 VWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTL--------------------NG  294 (435)
T ss_dssp             EEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEE--------------------EC
T ss_pred             EEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEE--------------------cC
Confidence            99998876542   222 3445667777  7889999999999999999886654432                    23


Q ss_pred             CCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCC---
Q 022716          169 GNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGR---  245 (293)
Q Consensus       169 ~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~---  245 (293)
                      +...+.++++  +++++++|+.||.|++||++++.++..+.+|..+|.+++|  ++.+|++|+.|+.|++||+.++.   
T Consensus       295 ~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~  370 (435)
T 1p22_A          295 HKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPR  370 (435)
T ss_dssp             CSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTT
T ss_pred             CCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCcc
Confidence            4456677777  4789999999999999999999999999999999999998  78999999999999999997655   


Q ss_pred             ------EEEEEe-cCCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeeec
Q 022716          246 ------TVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN  292 (293)
Q Consensus       246 ------~~~~~~-~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~~  292 (293)
                            .+..+. +..+|.+++|  ++.+|++++.|        +.++||++++
T Consensus       371 ~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~D--------g~i~iwd~~~  414 (435)
T 1p22_A          371 APAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHD--------DTILIWDFLN  414 (435)
T ss_dssp             SCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSS--------SEEEEEC---
T ss_pred             ccccchheeeccCCCCCeEEEEe--CCCEEEEEeCC--------CEEEEEECCC
Confidence                  566554 5668999999  77899999987        5777887754

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.5e-31  Score=226.89  Aligned_cols=218  Identities=17%  Similarity=0.281  Sum_probs=175.9

Q ss_pred             ccccEEEEEECCC----CCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEE
Q 022716           19 HKKKVHSVAWNCT----GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLW   94 (293)
Q Consensus        19 h~~~v~~l~~s~~----~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vw   94 (293)
                      |...|.+++|+|+    +++|++|+.||.|++||+...   . ....+.+|...|.+++|+|.++.+|++++.|+.|++|
T Consensus        68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~---~-~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iw  143 (366)
T 3k26_A           68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITM---Q-CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLW  143 (366)
T ss_dssp             TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTC---C-EEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEE
T ss_pred             CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhc---e-EeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEE
Confidence            6688999999999    678999999999999998753   1 2335678999999999999556899999999999999


Q ss_pred             eCCCCeeeeee----eecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeec-----------------------
Q 022716           95 DARSGKCSQQA----ELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-----------------------  147 (293)
Q Consensus        95 d~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~-----------------------  147 (293)
                      |+++++....+    .....+.+++|+|+++++++++.|+.+++||+++.+......                       
T Consensus       144 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (366)
T 3k26_A          144 NIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPD  223 (366)
T ss_dssp             ETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCS
T ss_pred             EeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCc
Confidence            99998877765    355678899999999999999999999999998765432221                       


Q ss_pred             ------ccceeeeeEEecCCCEEEEec-----------------------------------CCCCEEEEEECCC--CCE
Q 022716          148 ------FGYEVNEIAWNMTGEMFFLTT-----------------------------------GNAGCYCIAIDPM--GRY  184 (293)
Q Consensus       148 ------~~~~~~~v~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~--~~~  184 (293)
                            +...+..+.|+  ++.+...+                                   +...+.+++++|+  +++
T Consensus       224 ~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~  301 (366)
T 3k26_A          224 FSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKM  301 (366)
T ss_dssp             EEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSE
T ss_pred             cccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcE
Confidence                  34456666665  33333222                                   2223556778888  999


Q ss_pred             EEEecCCCcEEEEeCCCCE----EEEEeecc--CCCeeEEEEccCCCEEEEecCCCcEEEEEcC
Q 022716          185 FAVGSADSLVSLWDISEML----CVRTFTKL--EWPVRTISFSHTGDYIASASEDLFIDISNVH  242 (293)
Q Consensus       185 l~~gs~d~~i~iwd~~~~~----~~~~~~~~--~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~  242 (293)
                      |++|+.||.|++||+++++    ....+..|  ..+|.+++|+|++++|++++.|+.|++||+.
T Consensus       302 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          302 LALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             EEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             EEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence            9999999999999998763    44567777  6899999999999999999999999999985

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=6e-30  Score=223.60  Aligned_cols=250  Identities=21%  Similarity=0.371  Sum_probs=198.6

Q ss_pred             ceeecCccccE-EEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716           13 SREYTGHKKKV-HSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (293)
Q Consensus        13 ~~~~~~h~~~v-~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i   91 (293)
                      .+.+.+|.+.| .++.  ++|++|++|+.||+|++||+....    ....+.+|...|.++.+++   +++++|+.|+.|
T Consensus       111 ~~~l~~h~~~v~~~~~--~~g~~l~sg~~dg~i~vwd~~~~~----~~~~~~~h~~~v~~~~~~~---~~l~s~~~dg~i  181 (445)
T 2ovr_B          111 PKVLKGHDDHVITCLQ--FCGNRIVSGSDDNTLKVWSAVTGK----CLRTLVGHTGGVWSSQMRD---NIIISGSTDRTL  181 (445)
T ss_dssp             CEEEECSTTSCEEEEE--EETTEEEEEETTSCEEEEETTTCC----EEEECCCCSSCEEEEEEET---TEEEEEETTSCE
T ss_pred             eEEecccCCCcEEEEE--EcCCEEEEEECCCcEEEEECCCCc----EEEEEcCCCCCEEEEEecC---CEEEEEeCCCeE
Confidence            45678999864 6555  568999999999999999997532    2345779999999999973   589999999999


Q ss_pred             EEEeCCCCeeeeeeee-cCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeec-ccceeeeeEEecCCCEEE----
Q 022716           92 RLWDARSGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFF----  165 (293)
Q Consensus        92 ~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~----  165 (293)
                      ++||+.++++...+.. ...+.++.++  ++.+++++.|+.+++||+++.+...... +...+..+.|+  +..+.    
T Consensus       182 ~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~  257 (445)
T 2ovr_B          182 KVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYD--GRRVVSGAY  257 (445)
T ss_dssp             EEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEEC--SSCEEEEET
T ss_pred             EEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEEC--CCEEEEEcC
Confidence            9999999988776653 4456677775  5789999999999999999877665543 34455666552  22222    


Q ss_pred             -----------------EecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEE
Q 022716          166 -----------------LTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIA  228 (293)
Q Consensus       166 -----------------~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~  228 (293)
                                       +..+...+.++++  ++.++++|+.|+.|++||+++++.+..+.+|...+.++.+  ++++++
T Consensus       258 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~  333 (445)
T 2ovr_B          258 DFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILV  333 (445)
T ss_dssp             TSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEE--ETTEEE
T ss_pred             CCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEE--eCCEEE
Confidence                             2234456778887  7899999999999999999999999999999999988876  567999


Q ss_pred             EecCCCcEEEEEcCCCCEEEEEe----cCCCcceeEECCCCCeEEEEEcCCCCCCCC
Q 022716          229 SASEDLFIDISNVHTGRTVHQIP----CRAAMNSVEWNPKYNLLAYAGDDKNKYQAD  281 (293)
Q Consensus       229 s~s~d~~i~iw~~~~~~~~~~~~----~~~~i~~~~~sp~~~~la~~~~d~~~~~~~  281 (293)
                      +|+.|+.|++||+.+++.+..+.    +..+|.+++|+  +++|++|+.|+.+++|+
T Consensus       334 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd  388 (445)
T 2ovr_B          334 SGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWD  388 (445)
T ss_dssp             EEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEE
T ss_pred             EEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEE
Confidence            99999999999999999888875    45679999996  57999999886444443

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=2.5e-30  Score=227.03  Aligned_cols=252  Identities=21%  Similarity=0.286  Sum_probs=195.8

Q ss_pred             cceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCC-CCCEEEEEeCCCe
Q 022716           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK-HADLIATASGDKT   90 (293)
Q Consensus        12 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~-~~~~l~s~~~d~~   90 (293)
                      ....+.+|.+.|.+++|+|++ .|++|+.||+|++||+...    .....+.+|...|.++++++. +..++++++.|+.
T Consensus       154 ~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~----~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~  228 (464)
T 3v7d_B          154 FLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKG----CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNT  228 (464)
T ss_dssp             EEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTT----EEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSC
T ss_pred             EEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCC----cEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCc
Confidence            345678999999999999988 9999999999999999753    233457789999999999852 3468999999999


Q ss_pred             EEEEeCCCCeeeeee---------------------eecCc-eEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeec-
Q 022716           91 VRLWDARSGKCSQQA---------------------ELSGE-NINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-  147 (293)
Q Consensus        91 i~vwd~~~~~~~~~~---------------------~~~~~-~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~-  147 (293)
                      |++||+.++......                     ...++ .....++++++.+++++.|+.+++||+++.++..... 
T Consensus       229 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~  308 (464)
T 3v7d_B          229 LHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSG  308 (464)
T ss_dssp             EEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred             EEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecC
Confidence            999999876532110                     11111 1123447889999999999999999999887776654 


Q ss_pred             ccceeeeeEEecCCCEEEEecC---------------------CCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEE
Q 022716          148 FGYEVNEIAWNMTGEMFFLTTG---------------------NAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVR  206 (293)
Q Consensus       148 ~~~~~~~v~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~  206 (293)
                      +...+..+.|++.+..+...+.                     ...+.+++++  ++++++|+.||+|++||++++....
T Consensus       309 ~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~  386 (464)
T 3v7d_B          309 HTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKF  386 (464)
T ss_dssp             CSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEE
T ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceee
Confidence            4567888899888776654443                     3456677776  6899999999999999999887655


Q ss_pred             EeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEE--EecCCCcceeEECCCCCeEEEE-EcC
Q 022716          207 TFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQ--IPCRAAMNSVEWNPKYNLLAYA-GDD  274 (293)
Q Consensus       207 ~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~--~~~~~~i~~~~~sp~~~~la~~-~~d  274 (293)
                      .. .+...+..++|+|++++|++|+ |+.|++||+.+++.++.  ..+..+|.+++|+  +..++++ +.|
T Consensus       387 ~~-~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~--~~~l~~~~~~~  453 (464)
T 3v7d_B          387 SY-HHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK--GKTLVAAVEKD  453 (464)
T ss_dssp             EE-ECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE--TTEEEEEEEET
T ss_pred             ee-cCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec--CCEEEEEEEeC
Confidence            54 3566788899999999999999 89999999999998875  3456689999997  4454444 444

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=3.7e-30  Score=224.41  Aligned_cols=229  Identities=20%  Similarity=0.326  Sum_probs=188.9

Q ss_pred             cCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeC
Q 022716           17 TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDA   96 (293)
Q Consensus        17 ~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~   96 (293)
                      .+|...|.+++|  ++++|++|+.||.|++||+....    ....+.+|...|.+++|.   +.+|++|+.||.|++||+
T Consensus       130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~----~~~~~~~h~~~v~~l~~~---~~~l~sg~~dg~i~vwd~  200 (435)
T 1p22_A          130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLE----CKRILTGHTGSVLCLQYD---ERVIITGSSDSTVRVWDV  200 (435)
T ss_dssp             CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCC----EEEEECCCSSCEEEEECC---SSEEEEEETTSCEEEEES
T ss_pred             cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCe----EEEEEcCCCCcEEEEEEC---CCEEEEEcCCCeEEEEEC
Confidence            467778999987  78999999999999999987431    234577999999999983   468999999999999999


Q ss_pred             CCCeeeeeeee-cCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEE
Q 022716           97 RSGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYC  175 (293)
Q Consensus        97 ~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  175 (293)
                      .++++...+.. ...+.+++|+  +..+++++.|+.+++||+++.......                 .....+...+.+
T Consensus       201 ~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~-----------------~~~~~~~~~v~~  261 (435)
T 1p22_A          201 NTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLR-----------------RVLVGHRAAVNV  261 (435)
T ss_dssp             SSCCEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEE-----------------EEECCCSSCEEE
T ss_pred             CCCcEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceee-----------------eEecCCCCcEEE
Confidence            99988776653 4456677776  459999999999999999875533210                 122345567778


Q ss_pred             EEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEe-cCC
Q 022716          176 IAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP-CRA  254 (293)
Q Consensus       176 ~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~-~~~  254 (293)
                      +++  +++++++|+.||.|++||+++++.+..+.+|...|.+++|  +++++++|+.|+.|++||+.+++.+..+. +..
T Consensus       262 ~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~  337 (435)
T 1p22_A          262 VDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE  337 (435)
T ss_dssp             EEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSS
T ss_pred             EEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcC
Confidence            887  7899999999999999999999999999999999999998  57899999999999999999999888776 456


Q ss_pred             CcceeEECCCCCeEEEEEcCCCCCC
Q 022716          255 AMNSVEWNPKYNLLAYAGDDKNKYQ  279 (293)
Q Consensus       255 ~i~~~~~sp~~~~la~~~~d~~~~~  279 (293)
                      .|.+++|  ++++|++|+.|+.+++
T Consensus       338 ~v~~~~~--~~~~l~sg~~dg~i~v  360 (435)
T 1p22_A          338 LVRCIRF--DNKRIVSGAYDGKIKV  360 (435)
T ss_dssp             CEEEEEC--CSSEEEEEETTSCEEE
T ss_pred             cEEEEEe--cCCEEEEEeCCCcEEE
Confidence            7999999  7889999998854433

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2e-31  Score=233.21  Aligned_cols=236  Identities=11%  Similarity=0.082  Sum_probs=179.3

Q ss_pred             cccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCC-----ceeEE--------------------Eee-CCcCCeeEEE
Q 022716           20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHG-----KVKDI--------------------ELR-GHADSVDQLC   73 (293)
Q Consensus        20 ~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~-----~~~~~--------------------~~~-~h~~~i~~~~   73 (293)
                      ...|.+++|+|||+++|||+.|++|+  |......-     ....+                    .+. .|.+.|.+++
T Consensus        15 ~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~~va   92 (588)
T 2j04_A           15 EDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPRVCK   92 (588)
T ss_dssp             SSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEEEEE
T ss_pred             hccEEEEEECCCCCEEEEEcCCceee--cccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEEEEE
Confidence            46899999999999999999999996  43211000     00000                    111 4578899999


Q ss_pred             EcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeeeecC-----ceEEEEEcCCCCEEEEEeCCCeEEEEEccccce------
Q 022716           74 WDPKHADLIATASGDKTVRLWDARSGKCSQQAELSG-----ENINITYKPDGTHIAVGNRDDELTILDVRKFKP------  142 (293)
Q Consensus        74 ~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~------  142 (293)
                      |+|++ ..|++++.||.|++||.+.  +...+..+.     .+.+++|+|||++|++|+.||+|++||+++...      
T Consensus        93 wSPdG-~~LAs~s~dg~V~iwd~~~--~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i  169 (588)
T 2j04_A           93 PSPID-DWMAVLSNNGNVSVFKDNK--MLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFY  169 (588)
T ss_dssp             ECSSS-SCEEEEETTSCEEEEETTE--EEEECCCSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCE
T ss_pred             ECCCC-CEEEEEeCCCcEEEEeCCc--eeeeccCCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccce
Confidence            99975 6789999999999999544  444444222     377899999999999999999999999987532      


Q ss_pred             -eeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCE---EEEEee-ccCCCeeE
Q 022716          143 -IHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEML---CVRTFT-KLEWPVRT  217 (293)
Q Consensus       143 -~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~---~~~~~~-~~~~~v~~  217 (293)
                       +.....+                ...+...+.+++|+|++  +++++.|++|++||+....   ...++. +|...|.+
T Consensus       170 ~l~ti~~~----------------~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~s  231 (588)
T 2j04_A          170 FESSIRLS----------------DAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITD  231 (588)
T ss_dssp             EEEEEECS----------------CTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCC
T ss_pred             eeeeeecc----------------cccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEE
Confidence             1111000                02245678999999999  8888999999999997765   234563 67889999


Q ss_pred             EEEccCCCEEEEecCCCcEEEEEcCCCCE-EEEEecCCCcceeEE--CCCCCeEEEEEcCCCCCCCCcceEEEEee
Q 022716          218 ISFSHTGDYIASASEDLFIDISNVHTGRT-VHQIPCRAAMNSVEW--NPKYNLLAYAGDDKNKYQADEGVFRIYGF  290 (293)
Q Consensus       218 l~~sp~~~~l~s~s~d~~i~iw~~~~~~~-~~~~~~~~~i~~~~~--sp~~~~la~~~~d~~~~~~~~~~~~~~~~  290 (293)
                      ++|+  |+.||+++ ++.|++||+.+++. .....+...+..++|  +|++..|++++.|        |+ |+|.+
T Consensus       232 vaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~ed--------G~-klw~~  295 (588)
T 2j04_A          232 LKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKT--------SY-KVLLE  295 (588)
T ss_dssp             EEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSC--------EE-EEEES
T ss_pred             EEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCC--------CC-EEEee
Confidence            9999  68999997 69999999998877 445577788999999  9999999999977        45 66665

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=1.2e-30  Score=224.14  Aligned_cols=232  Identities=16%  Similarity=0.204  Sum_probs=189.4

Q ss_pred             cceeecCccccEEEEEECCC----C---CeEEEEeCCCcEEEeecCCCCCCc-eeEEEeeCC-----cCCeeEEEEc---
Q 022716           12 HSREYTGHKKKVHSVAWNCT----G---TKLASGSVDQTARVWHIEPHGHGK-VKDIELRGH-----ADSVDQLCWD---   75 (293)
Q Consensus        12 ~~~~~~~h~~~v~~l~~s~~----~---~~l~s~~~dg~v~iw~~~~~~~~~-~~~~~~~~h-----~~~i~~~~~~---   75 (293)
                      ....+.+|...|.+++|+|+    +   ++|++++.||.|++|++....... .....+..|     ...|.+++|+   
T Consensus        54 ~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  133 (397)
T 1sq9_A           54 KSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASN  133 (397)
T ss_dssp             GEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC
T ss_pred             cceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeecc
Confidence            35567799999999999999    9   999999999999999997543211 113356677     5899999999   


Q ss_pred             -CCCCCE-EEEEeCCCeEEEEeCCC------Ceeee-----eee--------ecCceEEEEEcCCCCEEEEEeCCCeEEE
Q 022716           76 -PKHADL-IATASGDKTVRLWDARS------GKCSQ-----QAE--------LSGENINITYKPDGTHIAVGNRDDELTI  134 (293)
Q Consensus        76 -~~~~~~-l~s~~~d~~i~vwd~~~------~~~~~-----~~~--------~~~~~~~~~~~~~~~~l~~~~~d~~i~l  134 (293)
                       |++ .. |++++.|+.|++||+.+      ++...     .+.        ....+.+++|+|++ .+++++.|+.+++
T Consensus       134 ~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i  211 (397)
T 1sq9_A          134 DRLL-SHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQI  211 (397)
T ss_dssp             -----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEE
T ss_pred             CCCC-ceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEE
Confidence             864 67 99999999999999987      54443     333        24567789999999 9999999999999


Q ss_pred             EEccccceeeeecc-------cceeeeeEEecCCCEEEEe------------------------c-------------CC
Q 022716          135 LDVRKFKPIHRRKF-------GYEVNEIAWNMTGEMFFLT------------------------T-------------GN  170 (293)
Q Consensus       135 ~d~~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~------------------------~-------------~~  170 (293)
                      ||+++.++......       ...+..+.|++.+..+...                        .             +.
T Consensus       212 ~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (397)
T 1sq9_A          212 SELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHS  291 (397)
T ss_dssp             EETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBS
T ss_pred             EECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccC
Confidence            99998877766654       6678888888876544322                        1             34


Q ss_pred             CCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEee------cc---------------CCCeeEEEEccCC-----
Q 022716          171 AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT------KL---------------EWPVRTISFSHTG-----  224 (293)
Q Consensus       171 ~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~------~~---------------~~~v~~l~~sp~~-----  224 (293)
                      ..+.+++|+|++++|++++.|+.|++||+++++.+..+.      .|               ..+|.+++|+|++     
T Consensus       292 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~  371 (397)
T 1sq9_A          292 SWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGM  371 (397)
T ss_dssp             SCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBST
T ss_pred             CcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccc
Confidence            567899999999999999999999999999999999998      77               8999999999998     


Q ss_pred             -----CEEEEecCCCcEEEEEcCCCC
Q 022716          225 -----DYIASASEDLFIDISNVHTGR  245 (293)
Q Consensus       225 -----~~l~s~s~d~~i~iw~~~~~~  245 (293)
                           ++|++++.|+.|++|++.+|+
T Consensus       372 ~~~~~~~l~s~~~dg~i~iw~~~~g~  397 (397)
T 1sq9_A          372 GADLNESLCCVCLDRSIRWFREAGGK  397 (397)
T ss_dssp             TCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred             cccccceEEEecCCCcEEEEEcCCCC
Confidence                 799999999999999998763

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=1.5e-30  Score=220.13  Aligned_cols=226  Identities=17%  Similarity=0.288  Sum_probs=183.4

Q ss_pred             cCccccEEEEEECCC---CCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEE------cCCCCCEEEEEeC
Q 022716           17 TGHKKKVHSVAWNCT---GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW------DPKHADLIATASG   87 (293)
Q Consensus        17 ~~h~~~v~~l~~s~~---~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~------~~~~~~~l~s~~~   87 (293)
                      .+|..+|.+++|+|+   +++|++|+.||.|++||+.....   ....+.+|...|.++.|      +|+ +.+|++++.
T Consensus        62 ~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~s~~-~~~l~~~~~  137 (357)
T 3i2n_A           62 IEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEM---PVYSVKGHKEIINAIDGIGGLGIGEG-APEIVTGSR  137 (357)
T ss_dssp             EEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSS---CSEEECCCSSCEEEEEEESGGGCC-C-CCEEEEEET
T ss_pred             ecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCc---cEEEEEecccceEEEeeccccccCCC-ccEEEEEeC
Confidence            379999999999999   69999999999999999975421   22356789999999965      454 568999999


Q ss_pred             CCeEEEEeCCCCe-eeeeeee-cC----ceEEEE----EcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEE
Q 022716           88 DKTVRLWDARSGK-CSQQAEL-SG----ENINIT----YKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAW  157 (293)
Q Consensus        88 d~~i~vwd~~~~~-~~~~~~~-~~----~~~~~~----~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~  157 (293)
                      |+.|++||+++++ ....+.. .+    .+.+++    |+|+++++++++.|+.+++||+++.+......+...+..+.|
T Consensus       138 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~  217 (357)
T 3i2n_A          138 DGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEF  217 (357)
T ss_dssp             TSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEE
T ss_pred             CCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEc
Confidence            9999999998876 4444432 22    455666    679999999999999999999999887777777788999999


Q ss_pred             ec---CCCEEEEe--------------------------cCCCCEEEEEECCCCC-EEEEecCCCcEEEEeCCCC-----
Q 022716          158 NM---TGEMFFLT--------------------------TGNAGCYCIAIDPMGR-YFAVGSADSLVSLWDISEM-----  202 (293)
Q Consensus       158 ~~---~~~~~~~~--------------------------~~~~~~~~~~~~~~~~-~l~~gs~d~~i~iwd~~~~-----  202 (293)
                      +|   .+..++..                          .+...+.+++++|+++ ++++|+.||.|++||++..     
T Consensus       218 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  297 (357)
T 3i2n_A          218 DRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSK  297 (357)
T ss_dssp             SCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--
T ss_pred             CCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCccccc
Confidence            98   66654432                          3445678999999998 8999999999999998643     


Q ss_pred             --------------EEEEEeeccCCCeeEEEEccCCCEEE-EecCCCcEEEEEcCCCCE
Q 022716          203 --------------LCVRTFTKLEWPVRTISFSHTGDYIA-SASEDLFIDISNVHTGRT  246 (293)
Q Consensus       203 --------------~~~~~~~~~~~~v~~l~~sp~~~~l~-s~s~d~~i~iw~~~~~~~  246 (293)
                                    ..+..+..|..+|.+++|+|++++|+ +++.|+.|++|++.+...
T Consensus       298 ~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~  356 (357)
T 3i2n_A          298 KDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK  356 (357)
T ss_dssp             CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred             ccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence                          46777888999999999999999998 899999999999987553

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=8.6e-30  Score=221.46  Aligned_cols=245  Identities=12%  Similarity=0.111  Sum_probs=201.6

Q ss_pred             eecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEE
Q 022716           15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLW   94 (293)
Q Consensus        15 ~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vw   94 (293)
                      .+.+|...|.+++|+++++.+++++.|+.|++||++...    ....+..|...+.+++|+|++..++++++.|+.|++|
T Consensus       164 ~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~  239 (433)
T 3bws_A          164 KYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLA----YKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVI  239 (433)
T ss_dssp             HHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCC----EEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             cccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCce----EEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEE
Confidence            355889999999999999999999999999999987431    2234567888999999999865555666689999999


Q ss_pred             eCCCCeeeeeeeecCceEEEEEcCCCCEEEEEe--------CCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEE
Q 022716           95 DARSGKCSQQAELSGENINITYKPDGTHIAVGN--------RDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFL  166 (293)
Q Consensus        95 d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--------~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  166 (293)
                      |+++++....+.....+..++|+|+++.+++++        .|+.|.+||+++.+.......                  
T Consensus       240 d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~------------------  301 (433)
T 3bws_A          240 DRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGP------------------  301 (433)
T ss_dssp             ETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEE------------------
T ss_pred             ECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccC------------------
Confidence            999998877777777788999999999999988        488999999987654433211                  


Q ss_pred             ecCCCCEEEEEECCCCCE-EEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecC-------------
Q 022716          167 TTGNAGCYCIAIDPMGRY-FAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASE-------------  232 (293)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~-l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~-------------  232 (293)
                         ...+.+++++|+++. +++++.|+.|++||+++++.+..+. +...+.+++|+|+|++|++++.             
T Consensus       302 ---~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g  377 (433)
T 3bws_A          302 ---PGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKG  377 (433)
T ss_dssp             ---EECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCC
T ss_pred             ---CCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCcccccccccc
Confidence               123557889999964 5677999999999999998877764 6678999999999999888776             


Q ss_pred             --CCcEEEEEcCCCCEEEEEecCCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeeec
Q 022716          233 --DLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN  292 (293)
Q Consensus       233 --d~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~~  292 (293)
                        ||.|++||..+++.+..+.....+.+++|+|++++|++++.+       .+.++||+++.
T Consensus       378 ~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~-------d~~i~v~~~~~  432 (433)
T 3bws_A          378 LVLGKVYVIDTTTDTVKEFWEAGNQPTGLDVSPDNRYLVISDFL-------DHQIRVYRRDG  432 (433)
T ss_dssp             SSCCEEEEEETTTTEEEEEEECSSSEEEEEECTTSCEEEEEETT-------TTEEEEEEETT
T ss_pred             ccceEEEEEECCCCcEEEEecCCCCCceEEEcCCCCEEEEEECC-------CCeEEEEEecC
Confidence              579999999999988888777789999999999999988752       26889998874

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=3.1e-30  Score=216.68  Aligned_cols=220  Identities=19%  Similarity=0.250  Sum_probs=177.2

Q ss_pred             ceeecCccccEEEEEECC--CCCeEEEEeCCCcEEEeecCCCCCCc-----eeEEEeeCCcCCeeEEEEcCCC-CCEEEE
Q 022716           13 SREYTGHKKKVHSVAWNC--TGTKLASGSVDQTARVWHIEPHGHGK-----VKDIELRGHADSVDQLCWDPKH-ADLIAT   84 (293)
Q Consensus        13 ~~~~~~h~~~v~~l~~s~--~~~~l~s~~~dg~v~iw~~~~~~~~~-----~~~~~~~~h~~~i~~~~~~~~~-~~~l~s   84 (293)
                      ...+.+|...|.+++|+|  ++++|++|+.||.|++||+.......     .....+.+|...|.+++|+|+. +.+|++
T Consensus        50 ~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~  129 (351)
T 3f3f_A           50 SDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLAC  129 (351)
T ss_dssp             EEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEE
T ss_pred             cceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEE
Confidence            345679999999999999  69999999999999999997542211     2334567899999999999962 468999


Q ss_pred             EeCCCeEEEEeCCCCeeeeeee--------------ecCceEEEEEcCC---CCEEEEEeCCCeEEEEEccccceeeeec
Q 022716           85 ASGDKTVRLWDARSGKCSQQAE--------------LSGENINITYKPD---GTHIAVGNRDDELTILDVRKFKPIHRRK  147 (293)
Q Consensus        85 ~~~d~~i~vwd~~~~~~~~~~~--------------~~~~~~~~~~~~~---~~~l~~~~~d~~i~l~d~~~~~~~~~~~  147 (293)
                      ++.|+.|++||+++++....+.              ....+.+++|+|+   +..+++++.++.+.+|+.........  
T Consensus       130 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--  207 (351)
T 3f3f_A          130 LGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVA--  207 (351)
T ss_dssp             EETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEE--
T ss_pred             ecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeee--
Confidence            9999999999998776443322              2335678999997   89999999999998887665432111  


Q ss_pred             ccceeeeeEEecCCCEEEEecCCCCEEEEEECCCC----CEEEEecCCCcEEEEeCCCC---------------------
Q 022716          148 FGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMG----RYFAVGSADSLVSLWDISEM---------------------  202 (293)
Q Consensus       148 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~gs~d~~i~iwd~~~~---------------------  202 (293)
                                      ..+..+...+.+++|+|++    ++|++|+.||.|++||++.+                     
T Consensus       208 ----------------~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  271 (351)
T 3f3f_A          208 ----------------AKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSAD  271 (351)
T ss_dssp             ----------------EECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC--------------------
T ss_pred             ----------------eecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcc
Confidence                            1122356678999999998    89999999999999998764                     


Q ss_pred             -------------------------EEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEE
Q 022716          203 -------------------------LCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQI  250 (293)
Q Consensus       203 -------------------------~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~  250 (293)
                                               ..+..+.+|..+|.+++|+|++++|++|+.|+.|++|++.+++.+..+
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~  344 (351)
T 3f3f_A          272 VDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCM  344 (351)
T ss_dssp             -------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred             cccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence                                     566777889999999999999999999999999999999988766544

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=2.2e-31  Score=222.66  Aligned_cols=212  Identities=22%  Similarity=0.276  Sum_probs=164.5

Q ss_pred             ceeecCccccEEEEEECC--CCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCC-CCEEEEEeCCC
Q 022716           13 SREYTGHKKKVHSVAWNC--TGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKH-ADLIATASGDK   89 (293)
Q Consensus        13 ~~~~~~h~~~v~~l~~s~--~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~-~~~l~s~~~d~   89 (293)
                      ...+.+|.++|.+++|+|  ++++|+||+.|++|++||+.....  .....+.+|...|.+++|+|+. +.+|++|+.|+
T Consensus        50 ~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~--~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~  127 (316)
T 3bg1_A           50 IADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTW--EKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDG  127 (316)
T ss_dssp             EEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCC--CEEEEECCCSSCCCEEEECCTTTCSCEEEECSSS
T ss_pred             EEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcc--eEEEEccCCCCceEEEEECCCCCCcEEEEEcCCC
Confidence            456789999999999986  489999999999999999875321  1234567899999999999973 46899999999


Q ss_pred             eEEEEeCCCCeee---eeee-ecCceEEEEEcCC-----------------CCEEEEEeCCCeEEEEEccccceeeeecc
Q 022716           90 TVRLWDARSGKCS---QQAE-LSGENINITYKPD-----------------GTHIAVGNRDDELTILDVRKFKPIHRRKF  148 (293)
Q Consensus        90 ~i~vwd~~~~~~~---~~~~-~~~~~~~~~~~~~-----------------~~~l~~~~~d~~i~l~d~~~~~~~~~~~~  148 (293)
                      .|++||++.+...   .... +...+.+++|+|+                 +++|++++.|++|++||++........  
T Consensus       128 ~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~--  205 (316)
T 3bg1_A          128 AISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEE--  205 (316)
T ss_dssp             CEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEE--
T ss_pred             CEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCcccee--
Confidence            9999999875321   1111 2334567889887                 478999999999999998643211100  


Q ss_pred             cceeeeeEEecCCCEEEEecCCCCEEEEEECCCC----CEEEEecCCCcEEEEeCCCC---E-EEEEeeccCCCeeEEEE
Q 022716          149 GYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMG----RYFAVGSADSLVSLWDISEM---L-CVRTFTKLEWPVRTISF  220 (293)
Q Consensus       149 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~gs~d~~i~iwd~~~~---~-~~~~~~~~~~~v~~l~~  220 (293)
                                     ..+..+...+.+++|+|++    .+|++|+.|++|++||++..   . ....+..|..+|.+++|
T Consensus       206 ---------------~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~  270 (316)
T 3bg1_A          206 ---------------QKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSW  270 (316)
T ss_dssp             ---------------ECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEE
T ss_pred             ---------------eecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEE
Confidence                           0122456678899999986    88999999999999998752   1 12334568889999999


Q ss_pred             ccCCCEEEEecCCCcEEEEEcCC
Q 022716          221 SHTGDYIASASEDLFIDISNVHT  243 (293)
Q Consensus       221 sp~~~~l~s~s~d~~i~iw~~~~  243 (293)
                      +|++++||+++.|+.|++|+...
T Consensus       271 sp~g~~las~~~D~~v~lw~~~~  293 (316)
T 3bg1_A          271 SITANILAVSGGDNKVTLWKESV  293 (316)
T ss_dssp             CTTTCCEEEEESSSCEEEEEECT
T ss_pred             cCCCCEEEEEcCCCeEEEEEECC
Confidence            99999999999999999999753

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=5.5e-30  Score=239.31  Aligned_cols=255  Identities=18%  Similarity=0.233  Sum_probs=202.8

Q ss_pred             cceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (293)
Q Consensus        12 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i   91 (293)
                      ..+.+.+|..+|++++|+|++++|++|+.||.|++||+....    ....+.+|...|.+++|+|++ ..|++++.|+.|
T Consensus        47 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~----~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i  121 (814)
T 3mkq_A           47 EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGE----KVVDFEAHPDYIRSIAVHPTK-PYVLSGSDDLTV  121 (814)
T ss_dssp             EEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCC----EEEEEECCSSCEEEEEECSSS-SEEEEEETTSEE
T ss_pred             eEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc----EEEEEecCCCCEEEEEEeCCC-CEEEEEcCCCEE
Confidence            346678999999999999999999999999999999987532    234567899999999999974 688999999999


Q ss_pred             EEEeCCCC-eeeeeee-ecCceEEEEEcC-CCCEEEEEeCCCeEEEEEccccceeeeecc--cceeeeeEEec--CCCEE
Q 022716           92 RLWDARSG-KCSQQAE-LSGENINITYKP-DGTHIAVGNRDDELTILDVRKFKPIHRRKF--GYEVNEIAWNM--TGEMF  164 (293)
Q Consensus        92 ~vwd~~~~-~~~~~~~-~~~~~~~~~~~~-~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~--~~~~~~v~~~~--~~~~~  164 (293)
                      ++||+.++ .....+. +...+.+++|+| ++..+++++.|+.|++||+++..+......  ...+..+.|++  .+..+
T Consensus       122 ~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l  201 (814)
T 3mkq_A          122 KLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYM  201 (814)
T ss_dssp             EEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEE
T ss_pred             EEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEE
Confidence            99999876 4444444 445678899999 889999999999999999987665544432  25678888887  55554


Q ss_pred             EEec---------------------CCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccC
Q 022716          165 FLTT---------------------GNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHT  223 (293)
Q Consensus       165 ~~~~---------------------~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~  223 (293)
                      ....                     +...+.+++++|+++++++++.||.|++||+.++..+..+..+..++.+++|+|+
T Consensus       202 ~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~  281 (814)
T 3mkq_A          202 ITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPT  281 (814)
T ss_dssp             EEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTT
T ss_pred             EEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccC
Confidence            4333                     3346789999999999999999999999999999989999889999999999999


Q ss_pred             CC--EEEEecCCCcEEEEEcCCCCEEEEE--------------------------------------------ecCCCcc
Q 022716          224 GD--YIASASEDLFIDISNVHTGRTVHQI--------------------------------------------PCRAAMN  257 (293)
Q Consensus       224 ~~--~l~s~s~d~~i~iw~~~~~~~~~~~--------------------------------------------~~~~~i~  257 (293)
                      ++  ++++++ |+.+.+|+.........+                                            .+...+.
T Consensus       282 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (814)
T 3mkq_A          282 GRKNYIASGF-DNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQ  360 (814)
T ss_dssp             CGGGEEEEEE-TTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCS
T ss_pred             CCceEEEEEe-CCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCc
Confidence            87  455555 555777776543211110                                            1123478


Q ss_pred             eeEECCCCCeEEEEE
Q 022716          258 SVEWNPKYNLLAYAG  272 (293)
Q Consensus       258 ~~~~sp~~~~la~~~  272 (293)
                      +++|+|++.++++++
T Consensus       361 ~~~~spdg~~la~~~  375 (814)
T 3mkq_A          361 SLAHSPNGRFVTVVG  375 (814)
T ss_dssp             EEEECTTSSEEEEEE
T ss_pred             eeEECCCCCEEEEec
Confidence            999999999999998

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.98  E-value=4.6e-29  Score=214.02  Aligned_cols=239  Identities=13%  Similarity=0.131  Sum_probs=189.3

Q ss_pred             eeecCccccEEEEEECCCCCeE-EEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEE
Q 022716           14 REYTGHKKKVHSVAWNCTGTKL-ASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (293)
Q Consensus        14 ~~~~~h~~~v~~l~~s~~~~~l-~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~   92 (293)
                      +.+.+|. .+.+++|+|+|++| ++++.|+.|++||+...   .. ...+..+ ..+.+++|+|++..++++++.++.|+
T Consensus        26 ~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~---~~-~~~~~~~-~~v~~~~~spdg~~l~~~~~~~~~v~   99 (391)
T 1l0q_A           26 ATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATN---NV-IATVPAG-SSPQGVAVSPDGKQVYVTNMASSTLS   99 (391)
T ss_dssp             EEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTT---EE-EEEEECS-SSEEEEEECTTSSEEEEEETTTTEEE
T ss_pred             EEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCC---eE-EEEEECC-CCccceEECCCCCEEEEEECCCCEEE
Confidence            4455554 58999999999987 67779999999998643   21 2233333 38999999998655556777789999


Q ss_pred             EEeCCCCeeeeeeeecCceEEEEEcCCCCEE-EEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCC
Q 022716           93 LWDARSGKCSQQAELSGENINITYKPDGTHI-AVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNA  171 (293)
Q Consensus        93 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  171 (293)
                      +||+.+++....+..+..+.+++|+|+++.+ ++++.++.+.+||+++.+.......                     ..
T Consensus       100 v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~---------------------~~  158 (391)
T 1l0q_A          100 VIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV---------------------GR  158 (391)
T ss_dssp             EEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC---------------------CS
T ss_pred             EEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEec---------------------CC
Confidence            9999999888877777788899999999987 6777799999999987665443221                     23


Q ss_pred             CEEEEEECCCCCEE-EEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEec---CCCcEEEEEcCCCCEE
Q 022716          172 GCYCIAIDPMGRYF-AVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASAS---EDLFIDISNVHTGRTV  247 (293)
Q Consensus       172 ~~~~~~~~~~~~~l-~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s---~d~~i~iw~~~~~~~~  247 (293)
                      .+.+++++|+++++ ++++.++.|++||+++++....+. +...+.+++|+|++++|++++   .|+.|++||..+++.+
T Consensus       159 ~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~  237 (391)
T 1l0q_A          159 SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKIT  237 (391)
T ss_dssp             SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEE
T ss_pred             CcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEE
Confidence            45678899999877 677889999999999998777664 456789999999999998887   6899999999999888


Q ss_pred             EEEecCCCcceeEECCCCCeEE-EEEcCCCCCCC
Q 022716          248 HQIPCRAAMNSVEWNPKYNLLA-YAGDDKNKYQA  280 (293)
Q Consensus       248 ~~~~~~~~i~~~~~sp~~~~la-~~~~d~~~~~~  280 (293)
                      ..+.....+.+++|+|++++|+ +++.|+.+++|
T Consensus       238 ~~~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~  271 (391)
T 1l0q_A          238 ARIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVI  271 (391)
T ss_dssp             EEEECCSSEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             EEEecCCCccEEEEccCCCEEEEEcCCCCEEEEE
Confidence            8887777788999999999874 55555444433

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.98  E-value=1.7e-29  Score=216.37  Aligned_cols=201  Identities=14%  Similarity=0.194  Sum_probs=168.9

Q ss_pred             EEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeee---ecCceEEEEEcC-CCCEEEEEeCCCeEEEE
Q 022716           60 IELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAE---LSGENINITYKP-DGTHIAVGNRDDELTIL  135 (293)
Q Consensus        60 ~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~---~~~~~~~~~~~~-~~~~l~~~~~d~~i~l~  135 (293)
                      ..+.+|...|.+++|+|++..+|++|+.|+.|++||+.+++....+.   +...+.+++|+| +++.+++++.|+.+++|
T Consensus        67 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw  146 (383)
T 3ei3_B           67 RTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLR  146 (383)
T ss_dssp             EEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEE
T ss_pred             EeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEE
Confidence            35678999999999999865799999999999999999887666554   456778999999 77999999999999999


Q ss_pred             EccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCe
Q 022716          136 DVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPV  215 (293)
Q Consensus       136 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v  215 (293)
                      |+++.. ......                 ...+...+.+++++|++++|++|+.|+.|++||+ ++..+..+..|...|
T Consensus       147 d~~~~~-~~~~~~-----------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v  207 (383)
T 3ei3_B          147 DFSGSV-IQVFAK-----------------TDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKV  207 (383)
T ss_dssp             ETTSCE-EEEEEC-----------------CCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCE
T ss_pred             ECCCCc-eEEEec-----------------cCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcE
Confidence            998522 111100                 0112356889999999999999999999999999 466778889999999


Q ss_pred             eEEEEccCCC-EEEEecCCCcEEEEEcCC----CCEEEEEecCCCcceeEECC-CCCeEEEEEcCCCCCC
Q 022716          216 RTISFSHTGD-YIASASEDLFIDISNVHT----GRTVHQIPCRAAMNSVEWNP-KYNLLAYAGDDKNKYQ  279 (293)
Q Consensus       216 ~~l~~sp~~~-~l~s~s~d~~i~iw~~~~----~~~~~~~~~~~~i~~~~~sp-~~~~la~~~~d~~~~~  279 (293)
                      .+++|+|+++ +|++|+.|+.|++||+.+    +..+..+.+...|.+++|+| ++++|++++.|+.+++
T Consensus       208 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~i  277 (383)
T 3ei3_B          208 THAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRV  277 (383)
T ss_dssp             EEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEE
T ss_pred             EEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEE
Confidence            9999999999 999999999999999987    66777778888999999999 9999999998854333

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.97  E-value=4.5e-31  Score=230.27  Aligned_cols=200  Identities=15%  Similarity=0.199  Sum_probs=159.8

Q ss_pred             eeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeee---ecCceEEEEEcC-CCCEEEEEeCCCeEEEEEc
Q 022716           62 LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAE---LSGENINITYKP-DGTHIAVGNRDDELTILDV  137 (293)
Q Consensus        62 ~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~---~~~~~~~~~~~~-~~~~l~~~~~d~~i~l~d~  137 (293)
                      ..+|...|++++|+|.+..+|++|+.||.|+|||+.+++......   +.+.+.+++|+| ++.+|++++.|++|++||+
T Consensus       115 ~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~  194 (435)
T 4e54_B          115 AAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDF  194 (435)
T ss_dssp             EEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEET
T ss_pred             CCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeec
Confidence            456888999999999877899999999999999998775443332   456688999998 6889999999999999999


Q ss_pred             cccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeE
Q 022716          138 RKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRT  217 (293)
Q Consensus       138 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~  217 (293)
                      ++.........                  ......+.+++++|++.+|++|+.||.|++||++.. .+..+.+|..+|.+
T Consensus       195 ~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~-~~~~~~~h~~~v~~  255 (435)
T 4e54_B          195 KGNILRVFASS------------------DTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK-ELWNLRMHKKKVTH  255 (435)
T ss_dssp             TSCEEEEEECC------------------SSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC-BCCCSBCCSSCEEE
T ss_pred             cCCceeEEecc------------------CCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc-eeEEEecccceEEe
Confidence            76432111100                  011234567899999999999999999999998654 45678899999999


Q ss_pred             EEEccCCC-EEEEecCCCcEEEEEcCCCCEEE----EEecCCCcceeEECCCCCeEEEEEcCCCCCCC
Q 022716          218 ISFSHTGD-YIASASEDLFIDISNVHTGRTVH----QIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQA  280 (293)
Q Consensus       218 l~~sp~~~-~l~s~s~d~~i~iw~~~~~~~~~----~~~~~~~i~~~~~sp~~~~la~~~~d~~~~~~  280 (293)
                      ++|+|++. +|++|+.|+.|++||+.+++...    ...+..+|++++|+|++++|++++.|+.+++|
T Consensus       256 v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iw  323 (435)
T 4e54_B          256 VALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVY  323 (435)
T ss_dssp             EEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEE
T ss_pred             eeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEE
Confidence            99999986 78899999999999998765332    23456789999999999999999998654443

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.1e-30  Score=219.09  Aligned_cols=243  Identities=11%  Similarity=0.046  Sum_probs=179.5

Q ss_pred             ccEEEEEECCCCCeEEEEeCCCcEEEeecCCC------CCCceeEEEeeCCcCCeeEEEEcC--CCCCEEEEEeCCCeEE
Q 022716           21 KKVHSVAWNCTGTKLASGSVDQTARVWHIEPH------GHGKVKDIELRGHADSVDQLCWDP--KHADLIATASGDKTVR   92 (293)
Q Consensus        21 ~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~------~~~~~~~~~~~~h~~~i~~~~~~~--~~~~~l~s~~~d~~i~   92 (293)
                      ..|.++.|+|+   +++|+.|++|++|+....      ...........+|...|.+++|+|  + +.++++++.|+.|+
T Consensus        77 ~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~s~s~dg~i~  152 (343)
T 3lrv_A           77 PNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVN-TEYFIWADNRGTIG  152 (343)
T ss_dssp             ECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC----CCEEEEEETTCCEE
T ss_pred             CCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCC-CCEEEEEeCCCcEE
Confidence            56777778887   999999999999987521      011111122336778999999999  6 46899999999999


Q ss_pred             EEeCCCCeeeeeee--ecCceEEEEEcCCCCEEEEEeCCCeEEEEEcccccee-eeecccceeeeeEEecCCCEEEEecC
Q 022716           93 LWDARSGKCSQQAE--LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPI-HRRKFGYEVNEIAWNMTGEMFFLTTG  169 (293)
Q Consensus        93 vwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~  169 (293)
                      +||++++++.....  ....+.+++|+|++.++++|+.|+.|++||+++.+.. ....                   ..+
T Consensus       153 ~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~-------------------~~h  213 (343)
T 3lrv_A          153 FQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFP-------------------VDE  213 (343)
T ss_dssp             EEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECC-------------------CCT
T ss_pred             EEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEe-------------------ccC
Confidence            99999988755442  2335779999999999999999999999999886643 2111                   125


Q ss_pred             CCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeec---cCCCee--EEEEccCCCEEEEecC-CCcEEEEEcCC
Q 022716          170 NAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK---LEWPVR--TISFSHTGDYIASASE-DLFIDISNVHT  243 (293)
Q Consensus       170 ~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~---~~~~v~--~l~~sp~~~~l~s~s~-d~~i~iw~~~~  243 (293)
                      ...+.+++|+|++.+|++++ |+.|++||+++...+..+..   +..++.  +++|+|+|++|++++. |+.+++|++.+
T Consensus       214 ~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~  292 (343)
T 3lrv_A          214 EAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDK  292 (343)
T ss_dssp             TSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             CCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcc
Confidence            67889999999999999999 55999999988765544433   334444  6999999999999998 99999999976


Q ss_pred             CCEEEEEecCCCcceeEECC---CCCeEEEEEcCCCCCCC--CcceEEEEee
Q 022716          244 GRTVHQIPCRAAMNSVEWNP---KYNLLAYAGDDKNKYQA--DEGVFRIYGF  290 (293)
Q Consensus       244 ~~~~~~~~~~~~i~~~~~sp---~~~~la~~~~d~~~~~~--~~~~~~~~~~  290 (293)
                      .......   .++..+.|+|   +...+++++.|+.+...  ....++|..+
T Consensus       293 ~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~i~~l  341 (343)
T 3lrv_A          293 KTKNWTK---DEESALCLQSDTADFTDMDVVCGDGGIAAILKTNDSFNIVAL  341 (343)
T ss_dssp             TTCSEEE---EEEEECCC----CCCCEEEEEEETTEEEEEEECSSEEEEEEE
T ss_pred             cccceEe---cCceeEecCccccccceeEEEecCCceEEEEecCCeEeEEEc
Confidence            6543222   4577889998   88899999998866652  3344555543

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.3e-29  Score=214.32  Aligned_cols=215  Identities=20%  Similarity=0.223  Sum_probs=172.3

Q ss_pred             ceeecCccccEEEEEECCC--CCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCC-CCEEEEEeCCC
Q 022716           13 SREYTGHKKKVHSVAWNCT--GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKH-ADLIATASGDK   89 (293)
Q Consensus        13 ~~~~~~h~~~v~~l~~s~~--~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~-~~~l~s~~~d~   89 (293)
                      .+.+.+|...|++++|+++  +++|++|+.||.|++||+....  ......+.+|...|.+++|+|+. +.+|++++.|+
T Consensus        48 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~  125 (379)
T 3jrp_A           48 IDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGR--WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG  125 (379)
T ss_dssp             EEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTE--EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred             eeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCc--eeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCC
Confidence            3567899999999999987  9999999999999999997531  12334567899999999999973 46899999999


Q ss_pred             eEEEEeCCCCeeeee--e-eecCceEEEEEcC-------------CCCEEEEEeCCCeEEEEEccccceeeeecccceee
Q 022716           90 TVRLWDARSGKCSQQ--A-ELSGENINITYKP-------------DGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVN  153 (293)
Q Consensus        90 ~i~vwd~~~~~~~~~--~-~~~~~~~~~~~~~-------------~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~  153 (293)
                      .|++||++.+.....  + .....+.+++|+|             ++..+++++.|+.|++||++........       
T Consensus       126 ~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------  198 (379)
T 3jrp_A          126 KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVL-------  198 (379)
T ss_dssp             EEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEE-------
T ss_pred             cEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceee-------
Confidence            999999988743322  2 3455678899999             6999999999999999999865422111       


Q ss_pred             eeEEecCCCEEEEecCCCCEEEEEECCC---CCEEEEecCCCcEEEEeCCCCE-----EEEEeeccCCCeeEEEEccCCC
Q 022716          154 EIAWNMTGEMFFLTTGNAGCYCIAIDPM---GRYFAVGSADSLVSLWDISEML-----CVRTFTKLEWPVRTISFSHTGD  225 (293)
Q Consensus       154 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~gs~d~~i~iwd~~~~~-----~~~~~~~~~~~v~~l~~sp~~~  225 (293)
                               ...+..+...+.+++|+|+   +++|++++.||.|++||++.+.     .+.....|...|.+++|+|+++
T Consensus       199 ---------~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~  269 (379)
T 3jrp_A          199 ---------ESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGN  269 (379)
T ss_dssp             ---------EEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSC
T ss_pred             ---------EEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCC
Confidence                     0123345677899999999   8999999999999999998752     2222334778999999999999


Q ss_pred             EEEEecCCCcEEEEEcCCCC
Q 022716          226 YIASASEDLFIDISNVHTGR  245 (293)
Q Consensus       226 ~l~s~s~d~~i~iw~~~~~~  245 (293)
                      +|++++.|+.|++|++..+.
T Consensus       270 ~l~~~~~dg~i~iw~~~~~~  289 (379)
T 3jrp_A          270 VLALSGGDNKVTLWKENLEG  289 (379)
T ss_dssp             CEEEEESSSSEEEEEEEETT
T ss_pred             EEEEecCCCcEEEEeCCCCC
Confidence            99999999999999987543

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.97  E-value=5e-29  Score=206.93  Aligned_cols=230  Identities=16%  Similarity=0.187  Sum_probs=182.1

Q ss_pred             ceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEE
Q 022716           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (293)
Q Consensus        13 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~   92 (293)
                      ...+.+|...|.+++|+|+++.|++|+.||.|++|++....... ....+.+|...|.++.|.   +.++++++.|+.|+
T Consensus        52 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~  127 (313)
T 3odt_A           52 GTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGED-PLYTLIGHQGNVCSLSFQ---DGVVISGSWDKTAK  127 (313)
T ss_dssp             EEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSC-C-CEECCCSSCEEEEEEE---TTEEEEEETTSEEE
T ss_pred             EEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCC-cccchhhcccCEEEEEec---CCEEEEEeCCCCEE
Confidence            45567899999999999999999999999999999987543222 223567899999999994   45899999999999


Q ss_pred             EEeCCCCeeeeeee-ecCceEEEEEcC-CCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEE-----
Q 022716           93 LWDARSGKCSQQAE-LSGENINITYKP-DGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFF-----  165 (293)
Q Consensus        93 vwd~~~~~~~~~~~-~~~~~~~~~~~~-~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----  165 (293)
                      +||  .++....+. ....+.++.+.| ++..+++++.|+.+++||...............+..+.|++.+..+.     
T Consensus       128 ~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg  205 (313)
T 3odt_A          128 VWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDG  205 (313)
T ss_dssp             EEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTEEEEEECSSCSSCEEEEEEEETTEEEEEETTS
T ss_pred             EEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCceEEEEeccCcccEEEEEEcCCCeEEEccCCC
Confidence            999  445555444 455677888887 89999999999999999954433322222556677788877665221     


Q ss_pred             ---------------EecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEe
Q 022716          166 ---------------LTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASA  230 (293)
Q Consensus       166 ---------------~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~  230 (293)
                                     +..+...+.+++++|++ .+++++.||.|++||+++++.+..+..|..+|.+++|+|+++ ++++
T Consensus       206 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~  283 (313)
T 3odt_A          206 LIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVG  283 (313)
T ss_dssp             EEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEE
T ss_pred             eEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEE
Confidence                           12234568899999999 589999999999999999999999999999999999999998 6679


Q ss_pred             cCCCcEEEEEcCCCCEEEEE
Q 022716          231 SEDLFIDISNVHTGRTVHQI  250 (293)
Q Consensus       231 s~d~~i~iw~~~~~~~~~~~  250 (293)
                      +.|+.|++|++.+++.+...
T Consensus       284 ~~dg~i~iw~~~~~~~~~~~  303 (313)
T 3odt_A          284 SSDNLVRIFSQEKSRWASED  303 (313)
T ss_dssp             ETTSCEEEEESCGGGCCC--
T ss_pred             eCCCcEEEEeCCCCceeehh
Confidence            99999999999887655433

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=9.2e-30  Score=222.69  Aligned_cols=223  Identities=9%  Similarity=0.042  Sum_probs=171.1

Q ss_pred             CccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcC-----CeeEEEEcCCCCCEEEEEeCCCeEE
Q 022716           18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHAD-----SVDQLCWDPKHADLIATASGDKTVR   92 (293)
Q Consensus        18 ~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~-----~i~~~~~~~~~~~~l~s~~~d~~i~   92 (293)
                      +|...|.+++|||+|++||+++.||.|++||.+.      ....+. |..     .|.+++|+|+ +++|++|+.||+|+
T Consensus        83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~------~l~~l~-~~~~~~~~sv~svafSPD-G~~LAsgs~DGtVk  154 (588)
T 2j04_A           83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK------MLTNLD-SKGNLSSRTYHCFEWNPI-ESSIVVGNEDGELQ  154 (588)
T ss_dssp             SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE------EEEECC-CSSCSTTTCEEEEEECSS-SSCEEEEETTSEEE
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc------eeeecc-CCCccccccEEEEEEcCC-CCEEEEEcCCCEEE
Confidence            6788999999999999999999999999999642      222344 554     4999999997 57899999999999


Q ss_pred             EEeCCCCee-------eeeeee-----cCceEEEEEcCCCCEEEEEeCCCeEEEEEcccccee---eeecccceeeeeEE
Q 022716           93 LWDARSGKC-------SQQAEL-----SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPI---HRRKFGYEVNEIAW  157 (293)
Q Consensus        93 vwd~~~~~~-------~~~~~~-----~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~---~~~~~~~~~~~v~~  157 (293)
                      +||+.++..       ...+..     ...+.+++|+|+|  +++++.|+++++||+.+....   +...          
T Consensus       155 IWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~----------  222 (588)
T 2j04_A          155 FFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQ----------  222 (588)
T ss_dssp             EEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEE----------
T ss_pred             EEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeec----------
Confidence            999988752       233322     2468899999999  888999999999998765521   1110          


Q ss_pred             ecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEE--ccCCCEEEEecCCCc
Q 022716          158 NMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISF--SHTGDYIASASEDLF  235 (293)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~--sp~~~~l~s~s~d~~  235 (293)
                               ..+...+.+++|+  ++.+|+++ +++|++||+..+.......+|...+..++|  +|+++.++++++||+
T Consensus       223 ---------~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~  290 (588)
T 2j04_A          223 ---------NASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY  290 (588)
T ss_dssp             ---------CCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE
T ss_pred             ---------ccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC
Confidence                     1234556678887  68889887 699999999988764444489999999999  999999999999999


Q ss_pred             EEEEEcCCCC------E-----------------EEEEecCCCcceeEECCCCCeEEEEEc
Q 022716          236 IDISNVHTGR------T-----------------VHQIPCRAAMNSVEWNPKYNLLAYAGD  273 (293)
Q Consensus       236 i~iw~~~~~~------~-----------------~~~~~~~~~i~~~~~sp~~~~la~~~~  273 (293)
                       ++|....-.      .                 +..+.....|.+++|||+|+.+|+++.
T Consensus       291 -klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~~~~~I~~va~SPdG~~lA~~~~  350 (588)
T 2j04_A          291 -KVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYETTLVIHGISLSPDGYSIAIVYD  350 (588)
T ss_dssp             -EEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSCCEEEEEEEEECTTSSEEEEEEE
T ss_pred             -EEEeeccEEECCCceEEEEcCCEEEEEECCCCceeeeccceEEEEEEECCCCCEEEEEEe
Confidence             999874210      0                 000111113678999999999999985

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.97  E-value=1.3e-28  Score=213.72  Aligned_cols=233  Identities=19%  Similarity=0.331  Sum_probs=183.6

Q ss_pred             EEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeee
Q 022716           23 VHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCS  102 (293)
Q Consensus        23 v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~  102 (293)
                      +..|+||++ +.||+|. |++|+|||+.+..  ....+.+.+|...|++++|+|+ +.+|++|+.|+.|++||+.+++++
T Consensus       108 ~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~--~~~~~~~~~~~~~V~sv~fspd-g~~lasgs~Dg~v~iWd~~~~~~~  182 (420)
T 4gga_A          108 LNLVDWSSG-NVLAVAL-DNSVYLWSASSGD--ILQLLQMEQPGEYISSVAWIKE-GNYLAVGTSSAEVQLWDVQQQKRL  182 (420)
T ss_dssp             CBCEEECTT-SEEEEEE-TTEEEEEETTTCC--EEEEEECCSTTCCEEEEEECTT-SSEEEEEETTSCEEEEETTTTEEE
T ss_pred             ceeEEECCC-CEEEEEe-CCEEEEEECCCCC--EEEEEEecCCCCcEEEEEECCC-CCEEEEEECCCeEEEEEcCCCcEE
Confidence            456999975 5777665 9999999987532  3334456788899999999997 478999999999999999999887


Q ss_pred             eeeeecC-ceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCC
Q 022716          103 QQAELSG-ENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPM  181 (293)
Q Consensus       103 ~~~~~~~-~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (293)
                      ..+..+. .+.++.  +++..+++|+.|+.+.+||.+......                   ..+..+...+..+.++|+
T Consensus       183 ~~~~~h~~~v~~~s--~~~~~l~sgs~d~~i~~~d~~~~~~~~-------------------~~~~~h~~~~~~~~~~~~  241 (420)
T 4gga_A          183 RNMTSHSARVGSLS--WNSYILSSGSRSGHIHHHDVRVAEHHV-------------------ATLSGHSQEVCGLRWAPD  241 (420)
T ss_dssp             EEECCCSSCEEEEE--EETTEEEEEETTSEEEEEETTSSSCEE-------------------EEEECCSSCEEEEEECTT
T ss_pred             EEEeCCCCceEEEe--eCCCEEEEEeCCCceeEeeecccceee-------------------EEecccccceeeeeecCC
Confidence            7765443 344444  567899999999999999987543211                   123345667788999999


Q ss_pred             CCEEEEecCCCcEEEEeCCCCE----EEEEeeccCCCeeEEEEccCCC-EEEE--ecCCCcEEEEEcCCCCEEEEEecCC
Q 022716          182 GRYFAVGSADSLVSLWDISEML----CVRTFTKLEWPVRTISFSHTGD-YIAS--ASEDLFIDISNVHTGRTVHQIPCRA  254 (293)
Q Consensus       182 ~~~l~~gs~d~~i~iwd~~~~~----~~~~~~~~~~~v~~l~~sp~~~-~l~s--~s~d~~i~iw~~~~~~~~~~~~~~~  254 (293)
                      ++++++++.|+.+++|+...++    .+.....|...|.+++|+|.+. .+++  |+.|+.|++||+.+++.+..+..+.
T Consensus       242 g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~  321 (420)
T 4gga_A          242 GRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS  321 (420)
T ss_dssp             SSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSS
T ss_pred             CCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecccc
Confidence            9999999999999999987653    3455677889999999999765 4444  5689999999999999998888888


Q ss_pred             CcceeEECCCCCeEEEEE--cCCCCCCCC
Q 022716          255 AMNSVEWNPKYNLLAYAG--DDKNKYQAD  281 (293)
Q Consensus       255 ~i~~~~~sp~~~~la~~~--~d~~~~~~~  281 (293)
                      .+.++.|+|+++.+++++  .|+.+++|+
T Consensus       322 ~v~~~~~~~~~~~lv~~sg~~d~~I~iwd  350 (420)
T 4gga_A          322 QVCSILWSPHYKELISGHGFAQNQLVIWK  350 (420)
T ss_dssp             CEEEEEEETTTTEEEEEECTTTCCEEEEE
T ss_pred             ceeeeeecCCCCeEEEEEecCCCEEEEEE
Confidence            999999999999988876  454444433

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.97  E-value=1.4e-28  Score=211.45  Aligned_cols=253  Identities=17%  Similarity=0.202  Sum_probs=168.0

Q ss_pred             cCccccEEEEEECC-CCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCC--CCEEEEEeCCCeEEE
Q 022716           17 TGHKKKVHSVAWNC-TGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKH--ADLIATASGDKTVRL   93 (293)
Q Consensus        17 ~~h~~~v~~l~~s~-~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~--~~~l~s~~~d~~i~v   93 (293)
                      .+|...|.+++|+| +++.|++++.||.|++||+...   .  ......+...+.++.++|..  ..++++++.|+.|++
T Consensus        96 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  170 (408)
T 4a11_B           96 DVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTL---Q--TADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQL  170 (408)
T ss_dssp             TCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTT---E--EEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEE
T ss_pred             ccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCC---c--cceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEE
Confidence            36999999999999 7789999999999999999753   1  12223467789999998864  348999999999999


Q ss_pred             EeCCCCeeeeeee-ecCceEEEEEcCCCCE-EEEEeCCCeEEEEEccccce-eee----------------ecccceeee
Q 022716           94 WDARSGKCSQQAE-LSGENINITYKPDGTH-IAVGNRDDELTILDVRKFKP-IHR----------------RKFGYEVNE  154 (293)
Q Consensus        94 wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~-l~~~~~d~~i~l~d~~~~~~-~~~----------------~~~~~~~~~  154 (293)
                      ||+++++....+. +...+.+++|+|++++ +++++.|+.+++||++.... ...                ..+...+..
T Consensus       171 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  250 (408)
T 4a11_B          171 CDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNG  250 (408)
T ss_dssp             EESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEE
T ss_pred             EeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeE
Confidence            9999888776665 4566789999999985 88999999999999986542 111                123344666


Q ss_pred             eEEecCCCEEEEecCCCCEEEEEE--------------------------CCCCCEEEEecCCCcEEEEeCCCCEEEEEe
Q 022716          155 IAWNMTGEMFFLTTGNAGCYCIAI--------------------------DPMGRYFAVGSADSLVSLWDISEMLCVRTF  208 (293)
Q Consensus       155 v~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~  208 (293)
                      +.|++.+..+...+.+..+....+                          ...+..+++++.++.|++||+.+++.+..+
T Consensus       251 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~  330 (408)
T 4a11_B          251 LCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITML  330 (408)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEE
T ss_pred             EEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeee
Confidence            666666665555544433222111                          112334555556666777777777778888


Q ss_pred             eccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEecCCCcceeEECCCC-CeEEEEEcCCC
Q 022716          209 TKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKY-NLLAYAGDDKN  276 (293)
Q Consensus       209 ~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~-~~la~~~~d~~  276 (293)
                      .+|..+|.+++|+|++++|++|+.|+.|++|++.+++.+.......  ....++|.. ..+++++.++.
T Consensus       331 ~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  397 (408)
T 4a11_B          331 KGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETT--TKSQLNPAFEDAWSSSDEEGG  397 (408)
T ss_dssp             CCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC----------------------------------
T ss_pred             ccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceE--eccccccccceeecccCccCc
Confidence            8999999999999999999999999999999999987765443222  223455533 33444444433

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.97  E-value=4.2e-29  Score=206.13  Aligned_cols=209  Identities=11%  Similarity=0.084  Sum_probs=149.7

Q ss_pred             ccccEEEEEECCC----CCeEEEEeC--------------------CCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEE
Q 022716           19 HKKKVHSVAWNCT----GTKLASGSV--------------------DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW   74 (293)
Q Consensus        19 h~~~v~~l~~s~~----~~~l~s~~~--------------------dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~   74 (293)
                      |...|.+++|+|+    +..+++++.                    |+.|++|++.+.+  + ....+.+|...+..++|
T Consensus       110 ~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG--~-~~~s~~~~~~~v~~l~f  186 (356)
T 2w18_A          110 EIREIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDG--G-GKENQFLMPPEETILTF  186 (356)
T ss_dssp             SEEEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTS--C-EEEEEEECCCSSCEEEE
T ss_pred             cccceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCC--c-eeeeeccCCCceeeEEe
Confidence            4457888888888    777777653                    8999999986532  2 22245578888888888


Q ss_pred             cC--CCCCEEEEEeCCCeEEEEeCCCCeeeeeeeecC----ceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecc
Q 022716           75 DP--KHADLIATASGDKTVRLWDARSGKCSQQAELSG----ENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF  148 (293)
Q Consensus        75 ~~--~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~  148 (293)
                      +|  .++.+|+|++.|++|++||+++++++..+..+.    .+.+++|+|+|+.+++++.+..  .|             
T Consensus       187 s~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~--~w-------------  251 (356)
T 2w18_A          187 AEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCA--KE-------------  251 (356)
T ss_dssp             EEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC---------------------
T ss_pred             eccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCC--cc-------------
Confidence            77  235799999999999999999999888876322    3446789999988888764322  12             


Q ss_pred             cceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEe-----eccCCCeeEEEEccC
Q 022716          149 GYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF-----TKLEWPVRTISFSHT  223 (293)
Q Consensus       149 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~-----~~~~~~v~~l~~sp~  223 (293)
                                                         .+++|+.|++|++||..+++.+..+     .+|...+.+.+  .+
T Consensus       252 -----------------------------------~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~--~s  294 (356)
T 2w18_A          252 -----------------------------------SESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGD--VK  294 (356)
T ss_dssp             -----------------------------------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEE--EE
T ss_pred             -----------------------------------eeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccc--cC
Confidence                                               3678999999999999999877655     24544444333  34


Q ss_pred             CCEEEEecCCCcEEEEEcCCCCEEEEEec-CCCcc-eeEECCCCCeEEEEEcCCCCCCCCcceEEEEee
Q 022716          224 GDYIASASEDLFIDISNVHTGRTVHQIPC-RAAMN-SVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGF  290 (293)
Q Consensus       224 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~-~~~i~-~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~  290 (293)
                      +.++|+|+.|++|+|||+.+++.++.+.. ...+. .++|||+|++||+|+.|+        ++|||++
T Consensus       295 g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~--------TIklWd~  355 (356)
T 2w18_A          295 DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDG--------NIFVYHY  355 (356)
T ss_dssp             TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTS--------CEEEEEE
T ss_pred             CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCC--------cEEEecC
Confidence            88999999999999999999999998863 34444 589999999999999885        6777775

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.97  E-value=1e-28  Score=215.09  Aligned_cols=212  Identities=21%  Similarity=0.389  Sum_probs=174.1

Q ss_pred             cceeecCccccEEEEEECCCCC-eEEEEeCCCcEEEeecCCCCCCce---eEEEeeCCcCCeeEEEEcCCCCCEEEEEeC
Q 022716           12 HSREYTGHKKKVHSVAWNCTGT-KLASGSVDQTARVWHIEPHGHGKV---KDIELRGHADSVDQLCWDPKHADLIATASG   87 (293)
Q Consensus        12 ~~~~~~~h~~~v~~l~~s~~~~-~l~s~~~dg~v~iw~~~~~~~~~~---~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~   87 (293)
                      ....+.+|...|.+++|+|++. .|++|+.||.|++|++........   ....+.+|...|.+++|+|.+..+|++++.
T Consensus       173 ~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~  252 (430)
T 2xyi_A          173 PDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVAD  252 (430)
T ss_dssp             CSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEET
T ss_pred             CcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeC
Confidence            4456789999999999999998 999999999999999975321111   123466899999999999977789999999


Q ss_pred             CCeEEEEeCCCC---eeeeeee-ecCceEEEEEcCCCC-EEEEEeCCCeEEEEEccccc-eeeeecccceeeeeEEecCC
Q 022716           88 DKTVRLWDARSG---KCSQQAE-LSGENINITYKPDGT-HIAVGNRDDELTILDVRKFK-PIHRRKFGYEVNEIAWNMTG  161 (293)
Q Consensus        88 d~~i~vwd~~~~---~~~~~~~-~~~~~~~~~~~~~~~-~l~~~~~d~~i~l~d~~~~~-~~~~~~~~~~~~~v~~~~~~  161 (293)
                      |+.|++||++++   .....+. +...+.+++|+|++. .+++|+.|+.|++||+++.. ++.                 
T Consensus       253 dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~-----------------  315 (430)
T 2xyi_A          253 DQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH-----------------  315 (430)
T ss_dssp             TSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSE-----------------
T ss_pred             CCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeE-----------------
Confidence            999999999876   3334443 456678999999987 58899999999999998732 222                 


Q ss_pred             CEEEEecCCCCEEEEEECCCCC-EEEEecCCCcEEEEeCCC--------------CEEEEEeeccCCCeeEEEEccCCC-
Q 022716          162 EMFFLTTGNAGCYCIAIDPMGR-YFAVGSADSLVSLWDISE--------------MLCVRTFTKLEWPVRTISFSHTGD-  225 (293)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~-~l~~gs~d~~i~iwd~~~--------------~~~~~~~~~~~~~v~~l~~sp~~~-  225 (293)
                         .+..+...+.+++|+|+++ +|++++.|+.|++||+..              ...+..+.+|...|.+++|+|+++ 
T Consensus       316 ---~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~  392 (430)
T 2xyi_A          316 ---SFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW  392 (430)
T ss_dssp             ---EEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTT
T ss_pred             ---EeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCC
Confidence               1234566788999999984 799999999999999976              356677788999999999999999 


Q ss_pred             EEEEecCCCcEEEEEcCC
Q 022716          226 YIASASEDLFIDISNVHT  243 (293)
Q Consensus       226 ~l~s~s~d~~i~iw~~~~  243 (293)
                      +|++++.|+.|++|++..
T Consensus       393 ~l~s~s~dg~i~iw~~~~  410 (430)
T 2xyi_A          393 IICSVSEDNIMQVWQMAE  410 (430)
T ss_dssp             EEEEEETTSEEEEEEECH
T ss_pred             EEEEEECCCCEEEeEccc
Confidence            899999999999999865

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.97  E-value=8.7e-28  Score=199.98  Aligned_cols=233  Identities=18%  Similarity=0.321  Sum_probs=182.7

Q ss_pred             EEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeee
Q 022716           23 VHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCS  102 (293)
Q Consensus        23 v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~  102 (293)
                      ..+|+||+++ .||+| .|++|+|||+.+.  .....+.+.+|...|.+++|+|+ +++|++|+.|+.|++||+.++++.
T Consensus        28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg--~~~~~~~~~~~~~~V~~v~~~~~-~~~l~sgs~Dg~v~iw~~~~~~~~  102 (318)
T 4ggc_A           28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSG--DILQLLQMEQPGEYISSVAWIKE-GNYLAVGTSSAEVQLWDVQQQKRL  102 (318)
T ss_dssp             CBCEEECTTS-EEEEE-ETTEEEEEETTTC--CEEEEEECCSTTCCEEEEEECTT-SSEEEEEETTSEEEEEETTTTEEE
T ss_pred             ceEEEECCCC-EEEEE-eCCEEEEEECCCC--CEEEEEEecCCCCeEEEEEECCC-CCEEEEEECCCcEEEeecCCceeE
Confidence            4679999876 66665 5999999999753  23344556788999999999997 468999999999999999999988


Q ss_pred             eeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCC
Q 022716          103 QQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMG  182 (293)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (293)
                      ..+..+... ...+++++..+++++.++.+.+|+........                   ..+..+...+.++++.+++
T Consensus       103 ~~~~~h~~~-~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~  162 (318)
T 4ggc_A          103 RNMTSHSAR-VGSLSWNSYILSSGSRSGHIHHHDVRVAEHHV-------------------ATLSGHSQEVCGLRWAPDG  162 (318)
T ss_dssp             EEEECCSSC-EEEEEEETTEEEEEETTSEEEEEETTSSSCEE-------------------EEEECCSSCEEEEEECTTS
T ss_pred             EEecCccce-EEEeecCCCEEEEEecCCceEeeecCCCceeE-------------------EEEcCccCceEEEEEcCCC
Confidence            776654433 23456677899999999999999976543211                   1223455667889999999


Q ss_pred             CEEEEecCCCcEEEEeCCCCE----EEEEeeccCCCeeEEEEccCCCE---EEEecCCCcEEEEEcCCCCEEEEEecCCC
Q 022716          183 RYFAVGSADSLVSLWDISEML----CVRTFTKLEWPVRTISFSHTGDY---IASASEDLFIDISNVHTGRTVHQIPCRAA  255 (293)
Q Consensus       183 ~~l~~gs~d~~i~iwd~~~~~----~~~~~~~~~~~v~~l~~sp~~~~---l~s~s~d~~i~iw~~~~~~~~~~~~~~~~  255 (293)
                      +++++++.|+.|++||+++++    .......+...|.+++++|++..   +++++.++.|++|+...............
T Consensus       163 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~  242 (318)
T 4ggc_A          163 RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ  242 (318)
T ss_dssp             SEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSC
T ss_pred             CEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceee
Confidence            999999999999999997643    23345567789999999998763   35778899999999999988888888888


Q ss_pred             cceeEECCCCCeEEEEE--cCCCCCCC
Q 022716          256 MNSVEWNPKYNLLAYAG--DDKNKYQA  280 (293)
Q Consensus       256 i~~~~~sp~~~~la~~~--~d~~~~~~  280 (293)
                      +..+.|+|+++.+++++  .|+.+++|
T Consensus       243 v~~~~~~~~~~~~~~~sg~~d~~i~iw  269 (318)
T 4ggc_A          243 VCSILWSPHYKELISGHGFAQNQLVIW  269 (318)
T ss_dssp             EEEEEEETTTTEEEEEECTTTCCEEEE
T ss_pred             eeeeeecccccceEEEEEcCCCEEEEE
Confidence            99999999999888776  45444443

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.97  E-value=1.2e-29  Score=218.32  Aligned_cols=216  Identities=12%  Similarity=0.108  Sum_probs=151.1

Q ss_pred             eecCccccEEEEEECC--------CCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEe
Q 022716           15 EYTGHKKKVHSVAWNC--------TGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATAS   86 (293)
Q Consensus        15 ~~~~h~~~v~~l~~s~--------~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~   86 (293)
                      .+.||.+.|.+++|+|        ||++|||||.|++|||||+...    .....+.+|...|.+++|+|++..+|++++
T Consensus       131 ~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~----~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~  206 (393)
T 4gq1_A          131 GKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDE----GPILAGYPLSSPGISVQFRPSNPNQLIVGE  206 (393)
T ss_dssp             TTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETT----EEEEEEEECSSCEEEEEEETTEEEEEEEEE
T ss_pred             ccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCC----ceeeeecCCCCCcEEEEECCCCCceEEecC
Confidence            4679999999999998        8899999999999999999642    233456678899999999998767899999


Q ss_pred             CCCeEEEEeCCCCeeeeeee--------------------------ecCceEEEEEc-CCCCEEEEEeCCCeEEEEEccc
Q 022716           87 GDKTVRLWDARSGKCSQQAE--------------------------LSGENINITYK-PDGTHIAVGNRDDELTILDVRK  139 (293)
Q Consensus        87 ~d~~i~vwd~~~~~~~~~~~--------------------------~~~~~~~~~~~-~~~~~l~~~~~d~~i~l~d~~~  139 (293)
                      .|++|++||+++++......                          ....+.++.|. |+++.+++++.|+++++||++.
T Consensus       207 ~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~  286 (393)
T 4gq1_A          207 RNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFA  286 (393)
T ss_dssp             TTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC--
T ss_pred             CCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECcc
Confidence            99999999998775432211                          11234467765 8999999999999999999976


Q ss_pred             cceeeeec-ccceeeeeEEecCCCEEEEecCCCCEEEEEECC-CCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeE
Q 022716          140 FKPIHRRK-FGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDP-MGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRT  217 (293)
Q Consensus       140 ~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~  217 (293)
                      ........ ....+..+.+.+...  ........+.++.+.+ ++.++++|+.||+|++||+.++.+...+..|..+|.+
T Consensus       287 ~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~s  364 (393)
T 4gq1_A          287 NNDYNEISDSTMKLGPKNLLPNVQ--GISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVD  364 (393)
T ss_dssp             -----------------CCSCSEE--EECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEE
T ss_pred             CCCCceEeeecCccccEEEccccc--cccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEE
Confidence            55433321 112222222222211  1112222222233333 3456788899999999999988877788889999999


Q ss_pred             EEEccCCCEEEEecCCCcE
Q 022716          218 ISFSHTGDYIASASEDLFI  236 (293)
Q Consensus       218 l~~sp~~~~l~s~s~d~~i  236 (293)
                      ++|+|+|++||++++||.+
T Consensus       365 vafspdG~~LA~as~~Gv~  383 (393)
T 4gq1_A          365 FCWHQDGSHLAIATEGSVL  383 (393)
T ss_dssp             EEECTTSSEEEEEESSEEE
T ss_pred             EEEcCCCCEEEEEeCCCeE
Confidence            9999999999999988853

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.97  E-value=1.4e-28  Score=208.41  Aligned_cols=221  Identities=22%  Similarity=0.349  Sum_probs=172.1

Q ss_pred             eeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEE--cCCCCCEEEEEeCCCeE
Q 022716           14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW--DPKHADLIATASGDKTV   91 (293)
Q Consensus        14 ~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~--~~~~~~~l~s~~~d~~i   91 (293)
                      ..+.+|...|.+++|+|++++|++|+.||.|++||+...   .  ...+.+|...|.++.|  +|+ ..+|++++.|+.|
T Consensus        80 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~---~--~~~~~~~~~~v~~~~~~~~~~-~~~l~~~~~dg~i  153 (368)
T 3mmy_A           80 KAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSN---Q--AIQIAQHDAPVKTIHWIKAPN-YSCVMTGSWDKTL  153 (368)
T ss_dssp             EEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT---E--EEEEEECSSCEEEEEEEECSS-CEEEEEEETTSEE
T ss_pred             EEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCC---C--ceeeccccCceEEEEEEeCCC-CCEEEEccCCCcE
Confidence            567899999999999999999999999999999999753   2  2346679999999999  765 4679999999999


Q ss_pred             EEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeec---ccceeeeeE------------
Q 022716           92 RLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK---FGYEVNEIA------------  156 (293)
Q Consensus        92 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~---~~~~~~~v~------------  156 (293)
                      ++||+++++....+..+....++.+.+  ..+++++.++.+.+||++.........   .......+.            
T Consensus       154 ~vwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (368)
T 3mmy_A          154 KFWDTRSSNPMMVLQLPERCYCADVIY--PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGF  231 (368)
T ss_dssp             EEECSSCSSCSEEEECSSCEEEEEEET--TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEE
T ss_pred             EEEECCCCcEEEEEecCCCceEEEecC--CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeE
Confidence            999999998887777777766666654  488899999999999997653221111   111111221            


Q ss_pred             -----------EecCCC-----EEEEecCCC------------CEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEe
Q 022716          157 -----------WNMTGE-----MFFLTTGNA------------GCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF  208 (293)
Q Consensus       157 -----------~~~~~~-----~~~~~~~~~------------~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~  208 (293)
                                 |+....     ...+..+..            .+.+++++|++++|++|+.||.|++||+++++++..+
T Consensus       232 ~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~  311 (368)
T 3mmy_A          232 ALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTS  311 (368)
T ss_dssp             EEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEEC
T ss_pred             EEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEe
Confidence                       221110     011112222            5899999999999999999999999999999999999


Q ss_pred             eccCCCeeEEEEccCCCEEEEecCCCcEEEEEcC
Q 022716          209 TKLEWPVRTISFSHTGDYIASASEDLFIDISNVH  242 (293)
Q Consensus       209 ~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~  242 (293)
                      ..|..+|.+++|+|+|++|++|+.|+..+.|++.
T Consensus       312 ~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~  345 (368)
T 3mmy_A          312 EQLDQPISACCFNHNGNIFAYASSYDWSKGHEFY  345 (368)
T ss_dssp             CCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGC
T ss_pred             cCCCCCceEEEECCCCCeEEEEeccccccccccc
Confidence            9999999999999999999999999876555543

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.97  E-value=6.2e-28  Score=204.96  Aligned_cols=219  Identities=12%  Similarity=0.116  Sum_probs=165.5

Q ss_pred             EeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEE-EEEeCCCeEEEEEccc
Q 022716           61 ELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHI-AVGNRDDELTILDVRK  139 (293)
Q Consensus        61 ~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~d~~i~l~d~~~  139 (293)
                      ...+|...|.+++|+|++ .+|++|+.+ .+++||+.+++........ .+..+.+.++++.+ ++++.|+++++||+++
T Consensus        14 ~~~~h~~~V~~v~fs~dg-~~la~g~~~-~~~iw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~   90 (355)
T 3vu4_A           14 PENHVSNPVTDYEFNQDQ-SCLILSTLK-SFEIYNVHPVAHIMSQEMR-HLSKVRMLHRTNYVAFVTGVKEVVHIWDDVK   90 (355)
T ss_dssp             -----CCCCCEEEECTTS-SEEEEECSS-EEEEEEETTEEEEEEEECS-CCCEEEECTTSSEEEEECSSTTEEEEEETTT
T ss_pred             ccccCCCceEEEEECCCC-CEEEEEcCC-EEEEEecCCcceeeeeecC-CeEEEEEcCCCCEEEEEECCccEEEEEECCC
Confidence            346899999999999975 678877766 5789999887665544333 35567888888877 5677789999999999


Q ss_pred             cceeeeecccceeeeeEEecCCCEEEE-------ecCCC---------CEEEEEECCCCCEEEE--ecCCCcEEEEeCCC
Q 022716          140 FKPIHRRKFGYEVNEIAWNMTGEMFFL-------TTGNA---------GCYCIAIDPMGRYFAV--GSADSLVSLWDISE  201 (293)
Q Consensus       140 ~~~~~~~~~~~~~~~v~~~~~~~~~~~-------~~~~~---------~~~~~~~~~~~~~l~~--gs~d~~i~iwd~~~  201 (293)
                      .+.+....+...+..+.+++.......       .....         ....+++++  .+++.  |+.||.|++||+++
T Consensus        91 ~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~  168 (355)
T 3vu4_A           91 KQDVSRIKVDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSN--GLLVYSNEFNLGQIHITKLQS  168 (355)
T ss_dssp             TEEEEEEECSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEET--TEEEEEESSCTTCEEEEECCC
T ss_pred             CcEEEEEECCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEc--cEEEEeCCCcCcEEEEEECCC
Confidence            888888777778888888764311110       00000         122344555  55555  78999999999987


Q ss_pred             CE----------------EEEEeeccCCCeeEEEEccCCCEEEEecCCCc-EEEEEcCCCCEEEEEe---cCCCcceeEE
Q 022716          202 ML----------------CVRTFTKLEWPVRTISFSHTGDYIASASEDLF-IDISNVHTGRTVHQIP---CRAAMNSVEW  261 (293)
Q Consensus       202 ~~----------------~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~-i~iw~~~~~~~~~~~~---~~~~i~~~~~  261 (293)
                      +.                ++..+.+|..+|.+++|+|+|++||+|+.|++ |++||+.+++.+..+.   +..+|.+++|
T Consensus       169 ~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~  248 (355)
T 3vu4_A          169 SGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKW  248 (355)
T ss_dssp             ------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEE
T ss_pred             CCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEE
Confidence            64                15678899999999999999999999999998 9999999999998886   6778999999


Q ss_pred             CCCCCeEEEEEcCCCCCCCCcceEEEEeeec
Q 022716          262 NPKYNLLAYAGDDKNKYQADEGVFRIYGFEN  292 (293)
Q Consensus       262 sp~~~~la~~~~d~~~~~~~~~~~~~~~~~~  292 (293)
                      +|++++||+++.|        +++|||+++.
T Consensus       249 s~~~~~l~s~s~d--------~~v~iw~~~~  271 (355)
T 3vu4_A          249 STDGSKLAVVSDK--------WTLHVFEIFN  271 (355)
T ss_dssp             CTTSCEEEEEETT--------CEEEEEESSC
T ss_pred             CCCCCEEEEEECC--------CEEEEEEccC
Confidence            9999999999988        5677777653

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.97  E-value=5.7e-29  Score=230.86  Aligned_cols=213  Identities=20%  Similarity=0.228  Sum_probs=172.1

Q ss_pred             ceeecCccccEEEEEECCC--CCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCC-CCEEEEEeCCC
Q 022716           13 SREYTGHKKKVHSVAWNCT--GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKH-ADLIATASGDK   89 (293)
Q Consensus        13 ~~~~~~h~~~v~~l~~s~~--~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~-~~~l~s~~~d~   89 (293)
                      ...+.+|.++|.+++|+|+  +++|++|+.||.|++||+....  ......+.+|...|.+++|+|+. +..+++|+.|+
T Consensus        46 ~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~--~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg  123 (753)
T 3jro_A           46 IDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGR--WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG  123 (753)
T ss_dssp             EEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTE--EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred             ceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCc--ccccccccCCCCCeEEEEECCCCCCCEEEEEeCCC
Confidence            4567899999999999988  9999999999999999997531  11334567899999999999973 57899999999


Q ss_pred             eEEEEeCCCCeeeee---eeecCceEEEEEcC-------------CCCEEEEEeCCCeEEEEEccccceeeeecccceee
Q 022716           90 TVRLWDARSGKCSQQ---AELSGENINITYKP-------------DGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVN  153 (293)
Q Consensus        90 ~i~vwd~~~~~~~~~---~~~~~~~~~~~~~~-------------~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~  153 (293)
                      .|++||++++.....   ......+.+++|+|             ++..+++|+.|+.|++||+++.......       
T Consensus       124 ~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~-------  196 (753)
T 3jro_A          124 KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVL-------  196 (753)
T ss_dssp             EEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEE-------
T ss_pred             cEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCccccee-------
Confidence            999999987743222   23456678899999             5899999999999999999875322110       


Q ss_pred             eeEEecCCCEEEEecCCCCEEEEEECCC---CCEEEEecCCCcEEEEeCCCCE-----EEEEeeccCCCeeEEEEccCCC
Q 022716          154 EIAWNMTGEMFFLTTGNAGCYCIAIDPM---GRYFAVGSADSLVSLWDISEML-----CVRTFTKLEWPVRTISFSHTGD  225 (293)
Q Consensus       154 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~gs~d~~i~iwd~~~~~-----~~~~~~~~~~~v~~l~~sp~~~  225 (293)
                               ...+..+...+.+++|+|+   ++++++|+.||.|++||++++.     .......|...|.+++|+|+|+
T Consensus       197 ---------~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~  267 (753)
T 3jro_A          197 ---------ESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGN  267 (753)
T ss_dssp             ---------EEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTC
T ss_pred             ---------eeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCC
Confidence                     0123356678899999999   8999999999999999998753     2223345778999999999999


Q ss_pred             EEEEecCCCcEEEEEcCC
Q 022716          226 YIASASEDLFIDISNVHT  243 (293)
Q Consensus       226 ~l~s~s~d~~i~iw~~~~  243 (293)
                      +|++|+.||.|++|++.+
T Consensus       268 ~l~s~s~Dg~I~vwd~~~  285 (753)
T 3jro_A          268 VLALSGGDNKVTLWKENL  285 (753)
T ss_dssp             CEEEECSSSCEECCBCCS
T ss_pred             EEEEEcCCCEEEEEecCC
Confidence            999999999999999874

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.96  E-value=9.3e-27  Score=199.66  Aligned_cols=214  Identities=14%  Similarity=0.180  Sum_probs=175.6

Q ss_pred             CeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeeeecCceE
Q 022716           33 TKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENI  112 (293)
Q Consensus        33 ~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~  112 (293)
                      ..+++++.|+.|++||+...   . ....+..|. .+.+++|+|++..++++++.|+.|++||+.+++....+..+..+.
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~---~-~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~   77 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSN---K-VTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQ   77 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTT---E-EEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEE
T ss_pred             EEEEEcCCCCEEEEEECCCC---e-EEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCcc
Confidence            35788999999999999743   2 222345554 589999999865556788899999999999999888888778888


Q ss_pred             EEEEcCCCCEEEEEe-CCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEE-EEecC
Q 022716          113 NITYKPDGTHIAVGN-RDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYF-AVGSA  190 (293)
Q Consensus       113 ~~~~~~~~~~l~~~~-~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~gs~  190 (293)
                      +++|+|+++++++++ .++.|.+||+++.+......                     ....+.+++++|+++.+ ++++.
T Consensus        78 ~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~---------------------~~~~~~~~~~s~dg~~l~~~~~~  136 (391)
T 1l0q_A           78 GVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK---------------------TGKSPLGLALSPDGKKLYVTNNG  136 (391)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE---------------------CSSSEEEEEECTTSSEEEEEETT
T ss_pred             ceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEe---------------------CCCCcceEEECCCCCEEEEEeCC
Confidence            999999999886555 57999999998766543322                     22346788999999977 78888


Q ss_pred             CCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEE-EEecCCCcEEEEEcCCCCEEEEEecCCCcceeEECCCCCeEE
Q 022716          191 DSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYI-ASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLA  269 (293)
Q Consensus       191 d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l-~s~s~d~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~la  269 (293)
                      ++.|++||+.+++.+..+..+ ..+..++|+|++++| ++++.|+.|++||..+++.+..+.....+.+++|+|++++|+
T Consensus       137 ~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~  215 (391)
T 1l0q_A          137 DKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAY  215 (391)
T ss_dssp             TTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEE
T ss_pred             CCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECCCCCEEE
Confidence            999999999999888777655 467999999999987 678899999999999998888888777899999999999999


Q ss_pred             EEEc
Q 022716          270 YAGD  273 (293)
Q Consensus       270 ~~~~  273 (293)
                      +++.
T Consensus       216 ~~~~  219 (391)
T 1l0q_A          216 VTNV  219 (391)
T ss_dssp             EEEE
T ss_pred             EEec
Confidence            9884

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.96  E-value=2.5e-27  Score=199.28  Aligned_cols=216  Identities=14%  Similarity=0.145  Sum_probs=175.3

Q ss_pred             eCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCe----eeeeeeecCceEEEEEcCCCC-EEEEEeCCCeEEEEEc
Q 022716           63 RGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGK----CSQQAELSGENINITYKPDGT-HIAVGNRDDELTILDV  137 (293)
Q Consensus        63 ~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~----~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~l~d~  137 (293)
                      .+|.+.|.+++|+|+ +.+|++++.|+.|++||+.++.    ......+...+.+++|+|+++ ++++++.|+.|++||+
T Consensus         8 ~~h~~~v~~~~~s~~-~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~   86 (342)
T 1yfq_A            8 QAPKDYISDIKIIPS-KSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDL   86 (342)
T ss_dssp             SCCSSCEEEEEEEGG-GTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECS
T ss_pred             cCCCCcEEEEEEcCC-CCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEe
Confidence            479999999999996 4689999999999999998776    444455667788999999999 9999999999999999


Q ss_pred             -cccceeeeec--ccceeeeeEEecCCCEEEEecC-----------------------------CCCEEEEEECCCCCEE
Q 022716          138 -RKFKPIHRRK--FGYEVNEIAWNMTGEMFFLTTG-----------------------------NAGCYCIAIDPMGRYF  185 (293)
Q Consensus       138 -~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~l  185 (293)
                       ++........  +...+..+.|++ +..++..+.                             ...+.+++++|++  +
T Consensus        87 ~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--l  163 (342)
T 1yfq_A           87 IGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR--L  163 (342)
T ss_dssp             SSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE--E
T ss_pred             ccCCceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCc--E
Confidence             8776655455  667889999998 655543322                             2357889999887  9


Q ss_pred             EEecCCCcEEEEeCCC-CE--EEEEeeccCCCeeEEEEcc-CCCEEEEecCCCcEEEEEcCCC------CEEEEEecC--
Q 022716          186 AVGSADSLVSLWDISE-ML--CVRTFTKLEWPVRTISFSH-TGDYIASASEDLFIDISNVHTG------RTVHQIPCR--  253 (293)
Q Consensus       186 ~~gs~d~~i~iwd~~~-~~--~~~~~~~~~~~v~~l~~sp-~~~~l~s~s~d~~i~iw~~~~~------~~~~~~~~~--  253 (293)
                      ++++.|+.|++||+++ +.  .......+..++.+++|+| +++++++++.|+.|++|+....      +.+..+..+  
T Consensus       164 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~  243 (342)
T 1yfq_A          164 IVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRL  243 (342)
T ss_dssp             EEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCC
T ss_pred             EEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccc
Confidence            9999999999999987 43  2334456788999999999 9999999999999999999876      555555432  


Q ss_pred             --------CCcceeEECCCCCeEEEEEcCCCCCCCCc
Q 022716          254 --------AAMNSVEWNPKYNLLAYAGDDKNKYQADE  282 (293)
Q Consensus       254 --------~~i~~~~~sp~~~~la~~~~d~~~~~~~~  282 (293)
                              .+|.+++|+|++++|++++.|+.+++|+-
T Consensus       244 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~  280 (342)
T 1yfq_A          244 NLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNL  280 (342)
T ss_dssp             CTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEET
T ss_pred             cccccccceeEEEEEEcCCCCEEEEecCCceEEEEcC
Confidence                    27999999999999999998865555443

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.96  E-value=5.5e-27  Score=203.73  Aligned_cols=246  Identities=13%  Similarity=0.125  Sum_probs=191.6

Q ss_pred             ccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEE---EeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCC
Q 022716           21 KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDI---ELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDAR   97 (293)
Q Consensus        21 ~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~---~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~   97 (293)
                      ..+.+++|+|++..+++++.|+.|++||+....  .....   .+.+|...|.+++|+|+ +.++++++.|+.|++||++
T Consensus       123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~--~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~s~~~d~~v~~~d~~  199 (433)
T 3bws_A          123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQ--TVRLSPPEKYKKKLGFVETISIPEH-NELWVSQMQANAVHVFDLK  199 (433)
T ss_dssp             SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCC--EEEECCCHHHHTTCCEEEEEEEGGG-TEEEEEEGGGTEEEEEETT
T ss_pred             CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCe--EeeecCcccccccCCceeEEEEcCC-CEEEEEECCCCEEEEEECC
Confidence            456699999977788888889999999987532  11111   24578889999999875 5689999999999999999


Q ss_pred             CCeeeeeeee-cCceEEEEEcCCCCEEEEEe-CCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEE
Q 022716           98 SGKCSQQAEL-SGENINITYKPDGTHIAVGN-RDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYC  175 (293)
Q Consensus        98 ~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~-~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  175 (293)
                      +++....+.. ...+.+++|+|+++.+++++ .|+.|.+||+++.+.......                     ...+.+
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~---------------------~~~~~~  258 (433)
T 3bws_A          200 TLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDK---------------------IGLPRG  258 (433)
T ss_dssp             TCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCC---------------------CSEEEE
T ss_pred             CceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecC---------------------CCCceE
Confidence            9887776653 44677899999999886555 799999999987665443221                     223567


Q ss_pred             EEECCCCCEEEEec--------CCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEE-EEecCCCcEEEEEcCCCCE
Q 022716          176 IAIDPMGRYFAVGS--------ADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYI-ASASEDLFIDISNVHTGRT  246 (293)
Q Consensus       176 ~~~~~~~~~l~~gs--------~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l-~s~s~d~~i~iw~~~~~~~  246 (293)
                      ++++|+++.+++++        .|+.|++||+++++.+..+ .+...+..++|+|+++++ ++++.|+.|++||..+++.
T Consensus       259 ~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~  337 (433)
T 3bws_A          259 LLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKV  337 (433)
T ss_dssp             EEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEE
T ss_pred             EEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcE
Confidence            88999999988887        5889999999998776654 455688999999999754 7778999999999999988


Q ss_pred             EEEEecCCCcceeEECCCCCeEEEEEcCCCC----CC---CCcceEEEEeee
Q 022716          247 VHQIPCRAAMNSVEWNPKYNLLAYAGDDKNK----YQ---ADEGVFRIYGFE  291 (293)
Q Consensus       247 ~~~~~~~~~i~~~~~sp~~~~la~~~~d~~~----~~---~~~~~~~~~~~~  291 (293)
                      +..+.....+.+++|+|+++++++++.+.+.    ++   ...|.+++|+++
T Consensus       338 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~  389 (433)
T 3bws_A          338 QKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTT  389 (433)
T ss_dssp             EEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETT
T ss_pred             EEEecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECC
Confidence            8888888889999999999999988875321    00   123567777654

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.95  E-value=5.8e-25  Score=190.48  Aligned_cols=225  Identities=15%  Similarity=0.199  Sum_probs=172.9

Q ss_pred             cceeecCccccEEEEEECCCCCeEEEEeCCC---cEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCC
Q 022716           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQ---TARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD   88 (293)
Q Consensus        12 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg---~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d   88 (293)
                      ..+.+.+|...|.+++|+|||++|++++.|+   .|++||+...   ..  ..+..|...+.+++|+|++..++++++.+
T Consensus       170 ~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg---~~--~~l~~~~~~~~~~~~spdg~~la~~~~~~  244 (415)
T 2hqs_A          170 NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANG---AV--RQVASFPRHNGAPAFSPDGSKLAFALSKT  244 (415)
T ss_dssp             SCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC---CE--EEEECCSSCEEEEEECTTSSEEEEEECTT
T ss_pred             CCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCC---cE--EEeecCCCcccCEEEcCCCCEEEEEEecC
Confidence            4566788999999999999999999999886   9999999753   22  24567888899999999865455577766


Q ss_pred             Ce--EEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeC-CC--eEEEEEccccceeeeecccceeeeeEEecCCCE
Q 022716           89 KT--VRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNR-DD--ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEM  163 (293)
Q Consensus        89 ~~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~--~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~  163 (293)
                      +.  |.+||+.+++..........+.+++|+|||+.|++++. ++  .+.+||+.+......                  
T Consensus       245 g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l------------------  306 (415)
T 2hqs_A          245 GSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRI------------------  306 (415)
T ss_dssp             SSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEEC------------------
T ss_pred             CCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEE------------------
Confidence            55  99999988876544445566778999999999998886 44  677778776542211                  


Q ss_pred             EEEecCCCCEEEEEECCCCCEEEEecCC---CcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCC---cEE
Q 022716          164 FFLTTGNAGCYCIAIDPMGRYFAVGSAD---SLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDL---FID  237 (293)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~l~~gs~d---~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~---~i~  237 (293)
                         ..+...+.+++|+|++++|++++.+   ..|.+||+.+++. ..+..+. .+.+++|+|+|++|++++.|+   .|+
T Consensus       307 ---~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~-~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~  381 (415)
T 2hqs_A          307 ---TWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLN  381 (415)
T ss_dssp             ---CCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEE
T ss_pred             ---ecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE-EEecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEE
Confidence               1122345678899999999888764   5899999998865 3455554 899999999999999998776   799


Q ss_pred             EEEcCCCCEEEEEe-cCCCcceeEECCCC
Q 022716          238 ISNVHTGRTVHQIP-CRAAMNSVEWNPKY  265 (293)
Q Consensus       238 iw~~~~~~~~~~~~-~~~~i~~~~~sp~~  265 (293)
                      +||+.. .....+. +...|.+++|+|..
T Consensus       382 ~~d~~g-~~~~~l~~~~~~v~~~~~~~~~  409 (415)
T 2hqs_A          382 LVSTDG-RFKARLPATDGQVKFPAWSPYL  409 (415)
T ss_dssp             EEETTS-CCEEECCCSSSEEEEEEECCCC
T ss_pred             EEECCC-CcEEEeeCCCCCCcCCcccccc
Confidence            999874 4455554 45679999999964

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.94  E-value=1.6e-25  Score=194.06  Aligned_cols=233  Identities=15%  Similarity=0.163  Sum_probs=176.5

Q ss_pred             eeecCccccEEEEEECC--------------CCCeEEEEeCC------CcEEEeecCCCCCCceeEEEeeCCcCCeeEEE
Q 022716           14 REYTGHKKKVHSVAWNC--------------TGTKLASGSVD------QTARVWHIEPHGHGKVKDIELRGHADSVDQLC   73 (293)
Q Consensus        14 ~~~~~h~~~v~~l~~s~--------------~~~~l~s~~~d------g~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~   73 (293)
                      ..+.+|...+..+++++              .+..++.++.+      +.|++||++..   .  ...+.+|...+.+++
T Consensus       111 ~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~---~--~~~l~~~~~~v~~~~  185 (415)
T 2hqs_A          111 NSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGY---N--QFVVHRSPQPLMSPA  185 (415)
T ss_dssp             EEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSC---S--CEEEEEESSCEEEEE
T ss_pred             eEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCC---C--CEEEeCCCCcceeeE
Confidence            44677777777777664              26677776664      79999999742   1  234567889999999


Q ss_pred             EcCCCCCEEEEEeCCC---eEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEE-EEeCCC--eEEEEEccccceeeeec
Q 022716           74 WDPKHADLIATASGDK---TVRLWDARSGKCSQQAELSGENINITYKPDGTHIA-VGNRDD--ELTILDVRKFKPIHRRK  147 (293)
Q Consensus        74 ~~~~~~~~l~s~~~d~---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~d~--~i~l~d~~~~~~~~~~~  147 (293)
                      |+|++ +.|++++.++   .|++||+.++++.........+.+++|+|||+.|+ +++.++  .|.+||+++.+....  
T Consensus       186 ~Spdg-~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l--  262 (415)
T 2hqs_A          186 WSPDG-SKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQV--  262 (415)
T ss_dssp             ECTTS-SEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEC--
T ss_pred             EcCCC-CEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeC--
Confidence            99975 5788888775   99999999988765555566778999999999888 555554  489999877543221  


Q ss_pred             ccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecC-CC--cEEEEeCCCCEEEEEeeccCCCeeEEEEccCC
Q 022716          148 FGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSA-DS--LVSLWDISEMLCVRTFTKLEWPVRTISFSHTG  224 (293)
Q Consensus       148 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~-d~--~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~  224 (293)
                                         ..+...+.+++|+|++++|+.++. ++  .|.+||+..+.. ..+..+...+.+++|+|+|
T Consensus       263 -------------------~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG  322 (415)
T 2hqs_A          263 -------------------TDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDG  322 (415)
T ss_dssp             -------------------CCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTS
T ss_pred             -------------------cCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECCCC
Confidence                               123345678899999999888876 44  677789887753 3455566788999999999


Q ss_pred             CEEEEecCC---CcEEEEEcCCCCEEEEEecCCCcceeEECCCCCeEEEEEcCC
Q 022716          225 DYIASASED---LFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDK  275 (293)
Q Consensus       225 ~~l~s~s~d---~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~d~  275 (293)
                      ++|++++.+   ..|++||..+++.. .+.....+.+++|+|++++|++++.++
T Consensus       323 ~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~~~~~~~~spdg~~l~~~s~~~  375 (415)
T 2hqs_A          323 KFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTFLDETPSLAPNGTMVIYSSSQG  375 (415)
T ss_dssp             SEEEEEEECSSCEEEEEEETTTCCEE-ECCCSSSCEEEEECTTSSEEEEEEEET
T ss_pred             CEEEEEECcCCceEEEEEECCCCCEE-EecCCCCcCCeEEcCCCCEEEEEEcCC
Confidence            999888764   57999999988764 343334788999999999999999876

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.94  E-value=5.4e-24  Score=178.75  Aligned_cols=241  Identities=15%  Similarity=0.150  Sum_probs=165.7

Q ss_pred             cCccccEEEEEECCCCCeEEEEeCC-CcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEe
Q 022716           17 TGHKKKVHSVAWNCTGTKLASGSVD-QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWD   95 (293)
Q Consensus        17 ~~h~~~v~~l~~s~~~~~l~s~~~d-g~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd   95 (293)
                      ..|...+.+++|+|+|++|++++.+ +.|++|+++...........+..+. .+..++|+|++..+++++..++.|.+||
T Consensus        34 ~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d  112 (343)
T 1ri6_A           34 VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTR  112 (343)
T ss_dssp             EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEE
Confidence            3567789999999999999988886 9999999973221111112233333 6789999998644445555589999999


Q ss_pred             CCCC---eeeeeeeecCceEEEEEcCCCCEEEEEe-CCCeEEEEEccc-cceeeeecccceeeeeEEecCCCEEEEecCC
Q 022716           96 ARSG---KCSQQAELSGENINITYKPDGTHIAVGN-RDDELTILDVRK-FKPIHRRKFGYEVNEIAWNMTGEMFFLTTGN  170 (293)
Q Consensus        96 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~l~d~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  170 (293)
                      +..+   +..........+..++|+|+++++++++ .++.+.+||+.+ .+......       .        .......
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~-------~--------~~~~~~~  177 (343)
T 1ri6_A          113 LEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDP-------A--------EVTTVEG  177 (343)
T ss_dssp             EETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEE-------E--------EEECSTT
T ss_pred             CCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecc-------c--------ccccCCC
Confidence            9433   3333444455677899999999888887 899999999976 32211100       0        0011122


Q ss_pred             CCEEEEEECCCCCEEE-EecCCCcEEEEeCCC--CE--EEEEeecc------CCCeeEEEEccCCCEEE-EecCCCcEEE
Q 022716          171 AGCYCIAIDPMGRYFA-VGSADSLVSLWDISE--ML--CVRTFTKL------EWPVRTISFSHTGDYIA-SASEDLFIDI  238 (293)
Q Consensus       171 ~~~~~~~~~~~~~~l~-~gs~d~~i~iwd~~~--~~--~~~~~~~~------~~~v~~l~~sp~~~~l~-s~s~d~~i~i  238 (293)
                      ..+..++++|++++++ ++..++.|.+|++..  +.  ....+...      ...+..++|+|+|++|+ ++..|+.|.+
T Consensus       178 ~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v  257 (343)
T 1ri6_A          178 AGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITV  257 (343)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             CCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEE
Confidence            3456789999999765 455889999999853  32  22222211      23566899999998876 5568999999


Q ss_pred             EEcC--CC--CEEEEEecCCCcceeEECCCCCeEEEEEc
Q 022716          239 SNVH--TG--RTVHQIPCRAAMNSVEWNPKYNLLAYAGD  273 (293)
Q Consensus       239 w~~~--~~--~~~~~~~~~~~i~~~~~sp~~~~la~~~~  273 (293)
                      |++.  ++  +.+..+.....+..++|+|++++|++++.
T Consensus       258 ~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~  296 (343)
T 1ri6_A          258 FSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQ  296 (343)
T ss_dssp             EEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECT
T ss_pred             EEEcCCCCceEEeeeecCCCccceEEECCCCCEEEEecC
Confidence            9998  33  33445555556899999999998888874

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.94  E-value=1.2e-24  Score=178.65  Aligned_cols=237  Identities=17%  Similarity=0.188  Sum_probs=172.3

Q ss_pred             ceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCC-CCCCceeEEEeeCC-cCCeeEEEEcCCCCCEEEEEe--CC
Q 022716           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEP-HGHGKVKDIELRGH-ADSVDQLCWDPKHADLIATAS--GD   88 (293)
Q Consensus        13 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~-~~~~~~~~~~~~~h-~~~i~~~~~~~~~~~~l~s~~--~d   88 (293)
                      ...+.+|...|.+++|+|+|++|++++ ++.|++||+.. ..   .. .....| ...+.+++|+|++ ..|++++  .+
T Consensus        34 ~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~---~~-~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~  107 (297)
T 2ojh_A           34 MRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPS---PE-KVDTGFATICNNDHGISPDG-ALYAISDKVEF  107 (297)
T ss_dssp             EEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCS---CE-ECCCTTCCCBCSCCEECTTS-SEEEEEECTTT
T ss_pred             eeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCC---ce-EeccccccccccceEECCCC-CEEEEEEeCCC
Confidence            345667899999999999999999987 88999999975 32   11 122344 3678899999975 5777777  33


Q ss_pred             CeEEEE--eCCCCeeeeeeeecCceEEEEEcCCCCEEE-EEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEE
Q 022716           89 KTVRLW--DARSGKCSQQAELSGENINITYKPDGTHIA-VGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFF  165 (293)
Q Consensus        89 ~~i~vw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  165 (293)
                      +...+|  +..++.. ..+........++|+|+++.++ ++..++.+.+|+++.....                   ...
T Consensus       108 ~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~-------------------~~~  167 (297)
T 2ojh_A          108 GKSAIYLLPSTGGTP-RLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGV-------------------ETR  167 (297)
T ss_dssp             SSCEEEEEETTCCCC-EECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCC-------------------EEE
T ss_pred             CcceEEEEECCCCce-EEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCc-------------------ceE
Confidence            455555  4454442 3333344567789999999887 6778999999986432110                   111


Q ss_pred             EecCCCCEEEEEECCCCCEEEEec-CCCcEEEEeCC-CCEEEEEeeccCCCeeEEEEccCCCEEEEecCC----------
Q 022716          166 LTTGNAGCYCIAIDPMGRYFAVGS-ADSLVSLWDIS-EMLCVRTFTKLEWPVRTISFSHTGDYIASASED----------  233 (293)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~l~~gs-~d~~i~iwd~~-~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d----------  233 (293)
                      +..+...+.+++|+|++++++.++ .++.+++|++. ....+..+..+...+..++|+|+|++|++++.+          
T Consensus       168 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~  247 (297)
T 2ojh_A          168 LTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDL  247 (297)
T ss_dssp             CCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSE
T ss_pred             cccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccC
Confidence            122344567889999999887665 58899999875 444566777777789999999999999888866          


Q ss_pred             -CcEEEEEcCCCCEEE--EE-ecCCCcceeEECCCCCeEEEEEcCC
Q 022716          234 -LFIDISNVHTGRTVH--QI-PCRAAMNSVEWNPKYNLLAYAGDDK  275 (293)
Q Consensus       234 -~~i~iw~~~~~~~~~--~~-~~~~~i~~~~~sp~~~~la~~~~d~  275 (293)
                       ..|++||..+++...  .+ .+...+..++|+|++++|++++.+.
T Consensus       248 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          248 DVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             EEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             ceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence             569999998876533  33 3456799999999999999998774

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.93  E-value=7.5e-23  Score=171.41  Aligned_cols=254  Identities=11%  Similarity=0.094  Sum_probs=181.2

Q ss_pred             EEECCCCCe-EEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCee-ee
Q 022716           26 VAWNCTGTK-LASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKC-SQ  103 (293)
Q Consensus        26 l~~s~~~~~-l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~-~~  103 (293)
                      ..|.+++++ +++++.++.|++||++...   .. .....+...+ .++|+|++..+++++..++.|.+||..+++. ..
T Consensus         3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~---~~-~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~   77 (331)
T 3u4y_A            3 AMFQTTSNFGIVVEQHLRRISFFSTDTLE---IL-NQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVV   77 (331)
T ss_dssp             ----CCCCEEEEEEGGGTEEEEEETTTCC---EE-EEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEE
T ss_pred             eeEcCCCCEEEEEecCCCeEEEEeCcccc---ee-eeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEE
Confidence            346666665 6788889999999987532   21 1223344556 8999998654555555589999999998886 55


Q ss_pred             eeeecCceEE-EEEcCCCCEEEEEeCCC---eEEEEEccccceeeeecccceeeeeEEecCCCEEEEec-CC--------
Q 022716          104 QAELSGENIN-ITYKPDGTHIAVGNRDD---ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTT-GN--------  170 (293)
Q Consensus       104 ~~~~~~~~~~-~~~~~~~~~l~~~~~d~---~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~--------  170 (293)
                      .......+.. ++|+|+|++++++..++   .+.+||+++.+.......+.....+.|+|+++.+++.. ..        
T Consensus        78 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~  157 (331)
T 3u4y_A           78 AIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFK  157 (331)
T ss_dssp             EEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEE
T ss_pred             ecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEE
Confidence            6666666667 99999999999655553   89999999888777776666778899999886444332 21        


Q ss_pred             ------------------CCEEEEEECCCCCEE-EEecCCCcEEEEeCCCCEE---EEEeeccCCCeeEEEEccCCCEEE
Q 022716          171 ------------------AGCYCIAIDPMGRYF-AVGSADSLVSLWDISEMLC---VRTFTKLEWPVRTISFSHTGDYIA  228 (293)
Q Consensus       171 ------------------~~~~~~~~~~~~~~l-~~gs~d~~i~iwd~~~~~~---~~~~~~~~~~v~~l~~sp~~~~l~  228 (293)
                                        .....++++|+++++ +++..++.|.+||+++++.   +..+.. ...+..++|+|+|++|+
T Consensus       158 ~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~  236 (331)
T 3u4y_A          158 IDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT-NNLPGTIVVSRDGSTVY  236 (331)
T ss_dssp             ECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC-SSCCCCEEECTTSSEEE
T ss_pred             ECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC-CCCCceEEECCCCCEEE
Confidence                              123467899999855 5556789999999988766   666654 35678999999999775


Q ss_pred             Ee-cCCCcEEEEEcCCCCE--EEEEecC-----C---CcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeeec
Q 022716          229 SA-SEDLFIDISNVHTGRT--VHQIPCR-----A---AMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN  292 (293)
Q Consensus       229 s~-s~d~~i~iw~~~~~~~--~~~~~~~-----~---~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~~  292 (293)
                      .+ ..++.|.+||..+++.  +..+...     .   ..+.++|+|++++|++++.+.       +.++||+++.
T Consensus       237 v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~-------~~v~v~d~~~  304 (331)
T 3u4y_A          237 VLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANIS-------RELKVFTISG  304 (331)
T ss_dssp             EECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTT-------TEEEEEETTS
T ss_pred             EEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCC-------CcEEEEEecC
Confidence            55 4678899999998876  4433322     1   124589999999988877653       5677777653

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.93  E-value=4.1e-22  Score=168.10  Aligned_cols=265  Identities=11%  Similarity=0.054  Sum_probs=194.5

Q ss_pred             ccccEEEEEECCCCCeEEEEeC-------CCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716           19 HKKKVHSVAWNCTGTKLASGSV-------DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (293)
Q Consensus        19 h~~~v~~l~~s~~~~~l~s~~~-------dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i   91 (293)
                      ....+..++|+|+|+++++++.       ++.|.+||.....  ....+..   ...+..+.++|++..++++...++.|
T Consensus        39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~--~~~~~~~---~~~~~~~~~s~dg~~l~v~~~~~~~v  113 (353)
T 3vgz_A           39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLE--VTQAIHN---DLKPFGATINNTTQTLWFGNTVNSAV  113 (353)
T ss_dssp             EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCC--EEEEEEE---SSCCCSEEEETTTTEEEEEETTTTEE
T ss_pred             hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCe--EEEEEec---CCCcceEEECCCCCEEEEEecCCCEE
Confidence            3457889999999999887774       5689999987532  2222222   23466788999865567777778999


Q ss_pred             EEEeCCCCeeeeeeeecC----------ceEEEEEcCCCCEEEEEe--CCCeEEEEEccccceeeeec-ccceeeeeEEe
Q 022716           92 RLWDARSGKCSQQAELSG----------ENINITYKPDGTHIAVGN--RDDELTILDVRKFKPIHRRK-FGYEVNEIAWN  158 (293)
Q Consensus        92 ~vwd~~~~~~~~~~~~~~----------~~~~~~~~~~~~~l~~~~--~d~~i~l~d~~~~~~~~~~~-~~~~~~~v~~~  158 (293)
                      .+||..+++....+....          .+..++++|+++.++++.  .++.+.+||+++.+...... .+..+..+.|+
T Consensus       114 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s  193 (353)
T 3vgz_A          114 TAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALD  193 (353)
T ss_dssp             EEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEE
T ss_pred             EEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEEC
Confidence            999999988776665532          256799999999887776  47899999999888777665 45557788899


Q ss_pred             cCCCEEEEecCCC-------------------------CEEEEEECCCCCEEEEecC-CCcEEEEeCCCCEEEEEeeccC
Q 022716          159 MTGEMFFLTTGNA-------------------------GCYCIAIDPMGRYFAVGSA-DSLVSLWDISEMLCVRTFTKLE  212 (293)
Q Consensus       159 ~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~l~~gs~-d~~i~iwd~~~~~~~~~~~~~~  212 (293)
                      +++..+++...+.                         .+..++++|+++++++++. ++.|.+||..+++.+..+....
T Consensus       194 ~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~  273 (353)
T 3vgz_A          194 SEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE  273 (353)
T ss_dssp             TTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS
T ss_pred             CCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC
Confidence            8887666544321                         2445889999997666654 5999999999988777765433


Q ss_pred             CCeeEEEEccCCCEEE-EecCCCcEEEEEcCCCCEEEEEecCCCcceeEECCCCCeEEEEEcCC-CCCCCCcceEEEEee
Q 022716          213 WPVRTISFSHTGDYIA-SASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDK-NKYQADEGVFRIYGF  290 (293)
Q Consensus       213 ~~v~~l~~sp~~~~l~-s~s~d~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~d~-~~~~~~~~~~~~~~~  290 (293)
                        ...++|+|+|++++ +...++.|.+||..+++.+..+........++|+|++++|.++..++ .....+..--+||-+
T Consensus       274 --~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~~~~~~~~~~~v~~i  351 (353)
T 3vgz_A          274 --SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPTHPNSLALSADGKTLYVSVKQKSTKQQEATQPDDVIRI  351 (353)
T ss_dssp             --CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCSEEEEEEECTTSCEEEEEEECCCBTTBCCSSCEEEEEE
T ss_pred             --CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCCCCCeEEEcCCCCEEEEEEcccccccccccCCCcEEEE
Confidence              36799999999654 45579999999999999888887777789999999999776666553 233333333345443

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.93  E-value=1.3e-22  Score=181.27  Aligned_cols=238  Identities=11%  Similarity=0.047  Sum_probs=183.2

Q ss_pred             EECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEee-CCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeC--CCCeeee
Q 022716           27 AWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELR-GHADSVDQLCWDPKHADLIATASGDKTVRLWDA--RSGKCSQ  103 (293)
Q Consensus        27 ~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~-~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~--~~~~~~~  103 (293)
                      +|+|++..+++++.|++|.+||.....  ..  ..+. +|.  +..++++|++ ++|++++.|+.|++||+  .+++++.
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~--~~--~~i~~g~~--~~~v~~spdg-~~l~v~~~d~~V~v~D~~~~t~~~~~  216 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKK--IV--KVIDTGYA--VHISRMSASG-RYLLVIGRDARIDMIDLWAKEPTKVA  216 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCC--EE--EEEECSTT--EEEEEECTTS-CEEEEEETTSEEEEEETTSSSCEEEE
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCce--EE--EEEecCcc--cceEEECCCC-CEEEEECCCCeEEEEECcCCCCcEEE
Confidence            488999999999999999999987532  22  2334 443  7889999974 68889999999999999  7888887


Q ss_pred             eeeecCceEEEEEcC----CCCEEEEEeC-CCeEEEEEccccceeeeeccc------------ceeeeeEEecCCCEEEE
Q 022716          104 QAELSGENINITYKP----DGTHIAVGNR-DDELTILDVRKFKPIHRRKFG------------YEVNEIAWNMTGEMFFL  166 (293)
Q Consensus       104 ~~~~~~~~~~~~~~~----~~~~l~~~~~-d~~i~l~d~~~~~~~~~~~~~------------~~~~~v~~~~~~~~~~~  166 (293)
                      .+.....+..++|+|    +|++++++.. ++++.+||..+.+++......            ..+..+.+++.+..+++
T Consensus       217 ~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~v  296 (543)
T 1nir_A          217 EIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIV  296 (543)
T ss_dssp             EEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEE
T ss_pred             EEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEE
Confidence            777777788999999    9999999884 899999999988877665431            14567778876655443


Q ss_pred             ecCC-----------------------CCEEEEEECCCCCEEEE-ecCCCcEEEEeCCCCEEEEEeec----cCCCeeEE
Q 022716          167 TTGN-----------------------AGCYCIAIDPMGRYFAV-GSADSLVSLWDISEMLCVRTFTK----LEWPVRTI  218 (293)
Q Consensus       167 ~~~~-----------------------~~~~~~~~~~~~~~l~~-gs~d~~i~iwd~~~~~~~~~~~~----~~~~v~~l  218 (293)
                      ....                       ..+..++|+|+++++++ +..+++|.+||+++++++..+..    |......+
T Consensus       297 s~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~  376 (543)
T 1nir_A          297 NVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF  376 (543)
T ss_dssp             EETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE
T ss_pred             EECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc
Confidence            3211                       12335789999997655 45689999999999998887764    43333333


Q ss_pred             EEccC-CCEEEEec-CCCcEEEEEcCC-------CCEEEEEecC-CCcceeEECCCCCeEEEEE
Q 022716          219 SFSHT-GDYIASAS-EDLFIDISNVHT-------GRTVHQIPCR-AAMNSVEWNPKYNLLAYAG  272 (293)
Q Consensus       219 ~~sp~-~~~l~s~s-~d~~i~iw~~~~-------~~~~~~~~~~-~~i~~~~~sp~~~~la~~~  272 (293)
                       ++|+ +..+++++ .|++|.+||..+       .+.++.+..+ ..+..++|||++++|.+++
T Consensus       377 -~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~  439 (543)
T 1nir_A          377 -VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDT  439 (543)
T ss_dssp             -EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECC
T ss_pred             -CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEec
Confidence             4687 66778876 689999999998       7888888754 4678899999999999987

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.93  E-value=6.6e-23  Score=183.12  Aligned_cols=245  Identities=9%  Similarity=0.066  Sum_probs=183.0

Q ss_pred             EEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcC----CCCCEEEEEe-CCCeEEEEeCC
Q 022716           23 VHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDP----KHADLIATAS-GDKTVRLWDAR   97 (293)
Q Consensus        23 v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~----~~~~~l~s~~-~d~~i~vwd~~   97 (293)
                      +++++|+|||++|++++.|++|++||+.... .. ....+. +......++|+|    ++ +++++++ .+++|.+||..
T Consensus       181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t-~~-~~~~i~-~g~~p~~va~sp~~~~dg-~~l~v~~~~~~~v~v~D~~  256 (543)
T 1nir_A          181 VHISRMSASGRYLLVIGRDARIDMIDLWAKE-PT-KVAEIK-IGIEARSVESSKFKGYED-RYTIAGAYWPPQFAIMDGE  256 (543)
T ss_dssp             EEEEEECTTSCEEEEEETTSEEEEEETTSSS-CE-EEEEEE-CCSEEEEEEECCSTTCTT-TEEEEEEEESSEEEEEETT
T ss_pred             cceEEECCCCCEEEEECCCCeEEEEECcCCC-Cc-EEEEEe-cCCCcceEEeCCCcCCCC-CEEEEEEccCCeEEEEecc
Confidence            8999999999999999999999999993111 11 122333 334578999999    75 5666666 58999999999


Q ss_pred             CCeeeeeeeec------------CceEEEEEcCCCCEE-EEEeCCCeEEEEEccccceee--eecccceeeeeEEecCCC
Q 022716           98 SGKCSQQAELS------------GENINITYKPDGTHI-AVGNRDDELTILDVRKFKPIH--RRKFGYEVNEIAWNMTGE  162 (293)
Q Consensus        98 ~~~~~~~~~~~------------~~~~~~~~~~~~~~l-~~~~~d~~i~l~d~~~~~~~~--~~~~~~~~~~v~~~~~~~  162 (293)
                      +.+++..+...            ..+..+.++|++..+ ++...+++|.+||+.+...+.  ....+..+..+.|+|+++
T Consensus       257 t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~  336 (543)
T 1nir_A          257 TLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHR  336 (543)
T ss_dssp             TCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSC
T ss_pred             ccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCC
Confidence            98887766542            145678999987655 455578999999998755433  333445567788999888


Q ss_pred             EEEEecCCC-C-------------------------EEEEEECCC-CCEEEEec-CCCcEEEEeCCC-------CEEEEE
Q 022716          163 MFFLTTGNA-G-------------------------CYCIAIDPM-GRYFAVGS-ADSLVSLWDISE-------MLCVRT  207 (293)
Q Consensus       163 ~~~~~~~~~-~-------------------------~~~~~~~~~-~~~l~~gs-~d~~i~iwd~~~-------~~~~~~  207 (293)
                      .++...... .                         ... .++|+ +..++++. .|++|.+||+.+       ++++++
T Consensus       337 ~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~-~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~  415 (543)
T 1nir_A          337 YFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGAN-FVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAE  415 (543)
T ss_dssp             EEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEE-EEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEE
T ss_pred             EEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcc-cCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEE
Confidence            766543211 1                         111 13566 56677775 689999999988       889999


Q ss_pred             eeccCCCeeEEEEccCCCEEEEec-------CCCcEEEEEcCCCCEE-EEEe---------cCCCcceeEECCCCCeEEE
Q 022716          208 FTKLEWPVRTISFSHTGDYIASAS-------EDLFIDISNVHTGRTV-HQIP---------CRAAMNSVEWNPKYNLLAY  270 (293)
Q Consensus       208 ~~~~~~~v~~l~~sp~~~~l~s~s-------~d~~i~iw~~~~~~~~-~~~~---------~~~~i~~~~~sp~~~~la~  270 (293)
                      +..+...+..++|+|+|++|++++       .+..|.+||+.+++.. ..++         ....+..++|+|+|+.+.+
T Consensus       416 l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~  495 (543)
T 1nir_A          416 LQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWF  495 (543)
T ss_dssp             EECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEE
T ss_pred             EEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEE
Confidence            999988889999999999999987       2679999999998876 4442         2456889999999999887


Q ss_pred             EE
Q 022716          271 AG  272 (293)
Q Consensus       271 ~~  272 (293)
                      +.
T Consensus       496 s~  497 (543)
T 1nir_A          496 SV  497 (543)
T ss_dssp             EE
T ss_pred             Ee
Confidence            74

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.92  E-value=4.2e-22  Score=166.78  Aligned_cols=244  Identities=12%  Similarity=0.070  Sum_probs=176.0

Q ss_pred             CeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcC-CeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeeeecC--
Q 022716           33 TKLASGSVDQTARVWHIEPHGHGKVKDIELRGHAD-SVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSG--  109 (293)
Q Consensus        33 ~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~-~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~--  109 (293)
                      ++|++++.++.|++||+....  ....+.. ++.. .+..++|+|++..+++++..++.|.+||+.+++....+....  
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~--~~~~~~~-~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~   78 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMA--VDKVITI-ADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPE   78 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTE--EEEEEEC-TTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTT
T ss_pred             cEEEEcCCCCeEEEEECCCCc--EEEEEEc-CCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcc
Confidence            478999999999999987431  1111211 2222 467889999865566777778999999999888776655433  


Q ss_pred             ----ceEEEEEcCCCCEEEEEe------------CCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCC-
Q 022716          110 ----ENINITYKPDGTHIAVGN------------RDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAG-  172 (293)
Q Consensus       110 ----~~~~~~~~~~~~~l~~~~------------~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-  172 (293)
                          .+..++|+|+|++++++.            .++.+.+||+.+.+.......+..+..+.|++++..+++..+.-. 
T Consensus        79 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~i~~  158 (337)
T 1pby_B           79 ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHV  158 (337)
T ss_dssp             EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESSSEEE
T ss_pred             cccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEeCCeEEE
Confidence                556799999999998886            579999999988777666665666778888888876555422100 


Q ss_pred             -------EE----------EEEECCCCCEEEEecCC-C-----------------------cEEEEeCCCCEEE-EEeec
Q 022716          173 -------CY----------CIAIDPMGRYFAVGSAD-S-----------------------LVSLWDISEMLCV-RTFTK  210 (293)
Q Consensus       173 -------~~----------~~~~~~~~~~l~~gs~d-~-----------------------~i~iwd~~~~~~~-~~~~~  210 (293)
                             +.          .++++|+++.++..+.. +                       .|.+||+++++.. ..+..
T Consensus       159 ~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~  238 (337)
T 1pby_B          159 MDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRI  238 (337)
T ss_dssp             EETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEE
T ss_pred             EECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCC
Confidence                   00          11345666554443322 2                       3688898877653 22344


Q ss_pred             cCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEecCCCcceeEECCCCCeEEEEEcCCCCCCCC
Q 022716          211 LEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQAD  281 (293)
Q Consensus       211 ~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~  281 (293)
                      +...+..++|+|+|++++++  ++.|.+||..+++.+..+.....+.+++|+|++++|++++.++.+++++
T Consensus       239 ~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d  307 (337)
T 1pby_B          239 MDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYD  307 (337)
T ss_dssp             CSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEE
T ss_pred             CCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEEcCCCcEEEEE
Confidence            55678899999999999888  7999999999998888877777789999999999999887765554443

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.92  E-value=4.9e-22  Score=164.11  Aligned_cols=239  Identities=13%  Similarity=0.058  Sum_probs=159.6

Q ss_pred             cEEEEEECCCCC---eEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCC
Q 022716           22 KVHSVAWNCTGT---KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS   98 (293)
Q Consensus        22 ~v~~l~~s~~~~---~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~   98 (293)
                      .+.++.|-..|.   .+++++ ...|++|+.... ..=.....+..|+.+|..+.+.|+..+++..+-.+-.+       
T Consensus        41 ~~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-------  111 (356)
T 2w18_A           41 DVSAMFWERAGCKEPCIITAC-EDVVSLWKALDA-WQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEI-------  111 (356)
T ss_dssp             EEEEEEEC----CEEEEEEEE-SSEEEEEEESSS-SBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSE-------
T ss_pred             EEeeeeeccCCCCccEEEEec-cceEEEcccCCC-ccceeeEEEeccCceeEEEEEcCcccceeeeeeccccc-------
Confidence            467777776664   566666 689999998753 11123456889999999999999766654332222111       


Q ss_pred             CeeeeeeeecCceEEEEEcCC----CCEEEEEeCCCeEEEEEccccceeeee--cccceeeeeEEecCCCEEE-EecCCC
Q 022716           99 GKCSQQAELSGENINITYKPD----GTHIAVGNRDDELTILDVRKFKPIHRR--KFGYEVNEIAWNMTGEMFF-LTTGNA  171 (293)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~~d~~i~l~d~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~-~~~~~~  171 (293)
                                ..+..++++|+    ++.+++++.  .+.+|++.+.+.+...  .++..++.+.++++++... ...+..
T Consensus       112 ----------~~v~sla~spd~~~~~~~l~s~g~--~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~  179 (356)
T 2w18_A          112 ----------REIRALFCSSDDESEKQVLLKSGN--IKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPP  179 (356)
T ss_dssp             ----------EEEEEECC------CCEEEEEEEE--EEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCC
T ss_pred             ----------cceEEEEECCCccccccEEEeCCC--eEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCC
Confidence                      23446778888    778888763  3677888766655552  2566777777777776533 344555


Q ss_pred             CEEEEEECC---CCCEEEEecCCCcEEEEeCCCCEEEEEeeccC---CCeeEEEEccCCCEE------------EEecCC
Q 022716          172 GCYCIAIDP---MGRYFAVGSADSLVSLWDISEMLCVRTFTKLE---WPVRTISFSHTGDYI------------ASASED  233 (293)
Q Consensus       172 ~~~~~~~~~---~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~---~~v~~l~~sp~~~~l------------~s~s~d  233 (293)
                      .+..++|+|   ++..||+|+.|++|+|||++++++++++.+|.   ..+.+++|+|+|+++            ++|+.|
T Consensus       180 ~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D  259 (356)
T 2w18_A          180 EETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPV  259 (356)
T ss_dssp             SSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CC
T ss_pred             ceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCC
Confidence            667778888   78999999999999999999999999998654   367778999999986            668899


Q ss_pred             CcEEEEEcCCCCEEEEEe----cCCCcceeEECCCCCeEEEEEcCCCCCCCC
Q 022716          234 LFIDISNVHTGRTVHQIP----CRAAMNSVEWNPKYNLLAYAGDDKNKYQAD  281 (293)
Q Consensus       234 ~~i~iw~~~~~~~~~~~~----~~~~i~~~~~sp~~~~la~~~~d~~~~~~~  281 (293)
                      ++|++||..+++.+..+.    ......-++.+.++..+|+++.|+.+++||
T Consensus       260 ~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTIkIWD  311 (356)
T 2w18_A          260 FQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIWD  311 (356)
T ss_dssp             EEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEETTEEEEEETTSCEEEEE
T ss_pred             cEEEEEECCCCEEEEEEEeeccCCCcceeEccccCCCEEEEEcCCCcEEEEE
Confidence            999999999998776542    111112233333477899999886444433

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.91  E-value=1.2e-22  Score=187.99  Aligned_cols=246  Identities=10%  Similarity=0.066  Sum_probs=166.2

Q ss_pred             cccEEEEEECCCCCeEEEEeC-CC-----cEEEeecCCCCCCceeEEEeeCCc----------------------CCeeE
Q 022716           20 KKKVHSVAWNCTGTKLASGSV-DQ-----TARVWHIEPHGHGKVKDIELRGHA----------------------DSVDQ   71 (293)
Q Consensus        20 ~~~v~~l~~s~~~~~l~s~~~-dg-----~v~iw~~~~~~~~~~~~~~~~~h~----------------------~~i~~   71 (293)
                      ...|.+++|||||++|++++. |+     .|++||+....  .........+.                      ..+..
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  113 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQ--TRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVD  113 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCC--EEEEECGGGTC--------------------CCEESCC
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCc--eeEccchhhcccccccccchhhhhhhhhhhccccCcce
Confidence            457999999999999999998 88     99999987532  11111111122                      23788


Q ss_pred             EEEcCCCCCEEEEEeCCCeEEEEeCCCC---eeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecc
Q 022716           72 LCWDPKHADLIATASGDKTVRLWDARSG---KCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF  148 (293)
Q Consensus        72 ~~~~~~~~~~l~s~~~d~~i~vwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~  148 (293)
                      ++|+|++ +.|++++. +.|.+||+.++   ...........+..++|+|||++++.++ ++.|.+||+.+....+....
T Consensus       114 ~~~SpDg-~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~  190 (741)
T 2ecf_A          114 YQWSPDA-QRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTAD  190 (741)
T ss_dssp             CEECTTS-SEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCC
T ss_pred             eEECCCC-CEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccC
Confidence            9999985 56666665 99999999887   5444334446678899999999999887 56999999987654433221


Q ss_pred             cceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCC---------------------------------cEE
Q 022716          149 GYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADS---------------------------------LVS  195 (293)
Q Consensus       149 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~---------------------------------~i~  195 (293)
                      +...  +..... .. ........+..++|+|||++|++++.|+                                 .|.
T Consensus       191 ~~~~--~~~g~~-~~-v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~  266 (741)
T 2ecf_A          191 GSTT--IGNGIA-EF-VADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLG  266 (741)
T ss_dssp             CCSS--EEESCC-CH-HHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEE
T ss_pred             Cccc--eecccc-ce-eeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEE
Confidence            1100  000000 00 0000000123567777777777776554                                 788


Q ss_pred             EEeCCC-CEEEEEee--ccCCCeeEEEEccCCCEEEEecC-----CCcEEEEEcCCCCEEEEEecCC-----CcceeEEC
Q 022716          196 LWDISE-MLCVRTFT--KLEWPVRTISFSHTGDYIASASE-----DLFIDISNVHTGRTVHQIPCRA-----AMNSVEWN  262 (293)
Q Consensus       196 iwd~~~-~~~~~~~~--~~~~~v~~l~~sp~~~~l~s~s~-----d~~i~iw~~~~~~~~~~~~~~~-----~i~~~~~s  262 (293)
                      +||+.+ ++......  .+...+..++| |||++|+.++.     +..|++||..+++....+....     .+..++|+
T Consensus       267 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~s  345 (741)
T 2ecf_A          267 VISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFL  345 (741)
T ss_dssp             EECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEEC
T ss_pred             EEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEEC
Confidence            899987 76543332  36678999999 99999987653     5779999999988765554322     45789999


Q ss_pred             CCCCeEEEEEcCC
Q 022716          263 PKYNLLAYAGDDK  275 (293)
Q Consensus       263 p~~~~la~~~~d~  275 (293)
                      |+|+++++++.|+
T Consensus       346 pdg~~~~~~~~~g  358 (741)
T 2ecf_A          346 DDGSILWSSERTG  358 (741)
T ss_dssp             TTSCEEEEECTTS
T ss_pred             CCCeEEEEecCCC
Confidence            9999888887664

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.91  E-value=2.3e-21  Score=163.56  Aligned_cols=235  Identities=13%  Similarity=0.187  Sum_probs=157.9

Q ss_pred             CccccEEEEEECCCCCeEEEEeC---CCcEEEeecCCCCCCceeE-EEeeCCcCCeeEEEEcCCCCCEEEEEe-CCCeEE
Q 022716           18 GHKKKVHSVAWNCTGTKLASGSV---DQTARVWHIEPHGHGKVKD-IELRGHADSVDQLCWDPKHADLIATAS-GDKTVR   92 (293)
Q Consensus        18 ~h~~~v~~l~~s~~~~~l~s~~~---dg~v~iw~~~~~~~~~~~~-~~~~~h~~~i~~~~~~~~~~~~l~s~~-~d~~i~   92 (293)
                      .+...+..++|+|+|+ |++++.   ++.|++|+++..   .... ..+..+...+..++|+|++ +.|++++ .++.+.
T Consensus        37 ~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g---~~~~~~~~~~~~~~p~~~a~spdg-~~l~~~~~~~~~v~  111 (347)
T 3hfq_A           37 AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQ---TAHKLNTVVAPGTPPAYVAVDEAR-QLVYSANYHKGTAE  111 (347)
T ss_dssp             EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETT---EEEEEEEEEEESCCCSEEEEETTT-TEEEEEETTTTEEE
T ss_pred             eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCC---cEEEeeeeecCCCCCEEEEECCCC-CEEEEEeCCCCEEE
Confidence            4556788899999999 655544   689999999542   2111 2234466678899999975 5556666 789999


Q ss_pred             EEeCC-CCee--eeeeeec----------CceEEEEEcCCCCEEEEEeCCCeEEEEEccc-cceeeeecccceeeeeEEe
Q 022716           93 LWDAR-SGKC--SQQAELS----------GENINITYKPDGTHIAVGNRDDELTILDVRK-FKPIHRRKFGYEVNEIAWN  158 (293)
Q Consensus        93 vwd~~-~~~~--~~~~~~~----------~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~-~~~~~~~~~~~~~~~v~~~  158 (293)
                      +|++. .+..  .......          ..+..++|+|+|+.+++...++.+.+||+.. ........       +   
T Consensus       112 v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~-------~---  181 (347)
T 3hfq_A          112 VMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSV-------L---  181 (347)
T ss_dssp             EEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEE-------E---
T ss_pred             EEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeee-------E---
Confidence            99985 3332  2222221          1256799999999666666788999999873 22111100       0   


Q ss_pred             cCCCEEEEecCCCCEEEEEECCCCCEEEE-ecCCCcEEEEeCCC--CEE--EEEeeccC------CCeeEEEEccCCCEE
Q 022716          159 MTGEMFFLTTGNAGCYCIAIDPMGRYFAV-GSADSLVSLWDISE--MLC--VRTFTKLE------WPVRTISFSHTGDYI  227 (293)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-gs~d~~i~iwd~~~--~~~--~~~~~~~~------~~v~~l~~sp~~~~l  227 (293)
                             .......+..++|+|+++++++ +..++.|.+|++..  +..  +..+....      ..+..++|+|+|++|
T Consensus       182 -------~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l  254 (347)
T 3hfq_A          182 -------TMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFL  254 (347)
T ss_dssp             -------ECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEE
T ss_pred             -------EcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEE
Confidence                   0111224567899999995554 66789999999863  442  22332222      348889999999987


Q ss_pred             -EEecCCCcEEEEEcCC-C--CEEEEEec-CCCcceeEECCCCCeEEEEEcC
Q 022716          228 -ASASEDLFIDISNVHT-G--RTVHQIPC-RAAMNSVEWNPKYNLLAYAGDD  274 (293)
Q Consensus       228 -~s~s~d~~i~iw~~~~-~--~~~~~~~~-~~~i~~~~~sp~~~~la~~~~d  274 (293)
                       +++..++.|.+|++.. +  +.+..+.. ...+..++|+|++++|++++.+
T Consensus       255 ~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~  306 (347)
T 3hfq_A          255 YVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQN  306 (347)
T ss_dssp             EEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETT
T ss_pred             EEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcC
Confidence             5666789999999873 3  33444444 3458899999999999998865

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.91  E-value=8e-22  Score=181.68  Aligned_cols=244  Identities=12%  Similarity=0.117  Sum_probs=179.1

Q ss_pred             ccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCC--
Q 022716           21 KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS--   98 (293)
Q Consensus        21 ~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~--   98 (293)
                      ..|.+++|||| +.++.+ .|+.+++||+...   .  ...+..+...+..++|+|++ +.|++ +.|+.|++||+.+  
T Consensus        82 ~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~---~--~~~l~~~~~~~~~~~~SpdG-~~la~-~~~~~i~v~~~~~~~  152 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLF-TQGGLVGFDMLAR---K--VTYLFDTNEETASLDFSPVG-DRVAY-VRNHNLYIARGGKLG  152 (706)
T ss_dssp             CCCEEEEETTT-TEEEEE-ETTEEEEEETTTT---E--EEEEECCTTCCTTCEECTTS-SEEEE-EETTEEEEEECBCTT
T ss_pred             cCceeEEECCC-CeEEEE-ECCEEEEEECCCC---c--eEEccCCcccccCCcCCCCC-CEEEE-EECCeEEEEecCccc
Confidence            56999999999 666655 4699999998742   2  23345667778889999985 46666 4689999999988  


Q ss_pred             ---CeeeeeeeecCc---------------eEEEEEcCCCCEEEEEe---------------------------------
Q 022716           99 ---GKCSQQAELSGE---------------NINITYKPDGTHIAVGN---------------------------------  127 (293)
Q Consensus        99 ---~~~~~~~~~~~~---------------~~~~~~~~~~~~l~~~~---------------------------------  127 (293)
                         ++..........               +..+.|+|||++|++++                                 
T Consensus       153 ~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~  232 (706)
T 2z3z_A          153 EGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPS  232 (706)
T ss_dssp             SCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCC
T ss_pred             ccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCC
Confidence               765543322222               36789999999999987                                 


Q ss_pred             CCCeEEEEEccccceeeee---cccceeeeeEEecCCCEEEEecCC---------------C-C---------------E
Q 022716          128 RDDELTILDVRKFKPIHRR---KFGYEVNEIAWNMTGEMFFLTTGN---------------A-G---------------C  173 (293)
Q Consensus       128 ~d~~i~l~d~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~~---------------~-~---------------~  173 (293)
                      .+..+.+||+.+.......   .....+..+.|+|++..+.+...+               . .               +
T Consensus       233 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~  312 (706)
T 2z3z_A          233 HHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPL  312 (706)
T ss_dssp             CEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCC
T ss_pred             CeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECcc
Confidence            4468999999876654332   233457889999998865543211               1 0               1


Q ss_pred             EEEEECC--CCCEEEEecCCCcEEEEeCC-CCEEEEEeeccCCCeeE-EEEccCCCEEEEec-CCC----cEEEEEcCCC
Q 022716          174 YCIAIDP--MGRYFAVGSADSLVSLWDIS-EMLCVRTFTKLEWPVRT-ISFSHTGDYIASAS-EDL----FIDISNVHTG  244 (293)
Q Consensus       174 ~~~~~~~--~~~~l~~gs~d~~i~iwd~~-~~~~~~~~~~~~~~v~~-l~~sp~~~~l~s~s-~d~----~i~iw~~~~~  244 (293)
                      ..++|+|  +++++++++.|+.++||++. ++..+..+..+...+.. ++|+|+|+.|+.++ .++    .|+.|+..++
T Consensus       313 ~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~  392 (706)
T 2z3z_A          313 HPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGG  392 (706)
T ss_dssp             SCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCC
T ss_pred             CCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCC
Confidence            2358999  99999999999999999875 56667778888888887 79999999876554 444    6777787776


Q ss_pred             CEEEEEecCCCcceeEECCCCCeEEEEEcC
Q 022716          245 RTVHQIPCRAAMNSVEWNPKYNLLAYAGDD  274 (293)
Q Consensus       245 ~~~~~~~~~~~i~~~~~sp~~~~la~~~~d  274 (293)
                      + ...+.+...+.+++|||++++|+++..+
T Consensus       393 ~-~~~l~~~~~~~~~~~spdg~~l~~~~~~  421 (706)
T 2z3z_A          393 K-TKDLTPESGMHRTQLSPDGSAIIDIFQS  421 (706)
T ss_dssp             C-CEESCCSSSEEEEEECTTSSEEEEEEEC
T ss_pred             C-ceeccCCCceEEEEECCCCCEEEEEecC
Confidence            5 4455556678899999999999887654

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.91  E-value=5.6e-22  Score=166.92  Aligned_cols=231  Identities=10%  Similarity=-0.013  Sum_probs=164.0

Q ss_pred             EEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCc-CCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeee
Q 022716           25 SVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHA-DSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQ  103 (293)
Q Consensus        25 ~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~-~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~  103 (293)
                      .+++++++..+++++.++.|++||+...   ... ..+..+. ..+..++|+|++..++++...++.|.+||+.+++...
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~---~~~-~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~   79 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASD---TVY-KSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTF   79 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTT---EEE-EEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCC---cEE-EEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEE
Confidence            4567888889999999999999998743   211 1222222 2467889999865456677779999999999988776


Q ss_pred             eeeecCc-------eEEEEEcCCCCEEEEEeCC------------CeEEEEEccccceeeeecccceeeeeEEecCCCEE
Q 022716          104 QAELSGE-------NINITYKPDGTHIAVGNRD------------DELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMF  164 (293)
Q Consensus       104 ~~~~~~~-------~~~~~~~~~~~~l~~~~~d------------~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~  164 (293)
                      .+.....       +..++|+|+|+++++++.+            +.+.+||+.+.+.......                
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~----------------  143 (349)
T 1jmx_B           80 HANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRT----------------  143 (349)
T ss_dssp             EEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEE----------------
T ss_pred             EEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeee----------------
Confidence            6654332       5678999999999998865            8999999987432221100                


Q ss_pred             EEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeecc---------------------------------
Q 022716          165 FLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL---------------------------------  211 (293)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~---------------------------------  211 (293)
                        ......+.+++++|+++ +++++.  .|.+||+++++.+..+...                                 
T Consensus       144 --~~~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (349)
T 1jmx_B          144 --FPMPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIAR  218 (349)
T ss_dssp             --EECCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEE
T ss_pred             --ccCCCcccceeECCCCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeee
Confidence              00112345667788887 444433  3888888777655544322                                 


Q ss_pred             -----------------------------------CCCeeEEEEcc-CCCEEEEecCCCcEEEEEcCCCCEEEEEecCCC
Q 022716          212 -----------------------------------EWPVRTISFSH-TGDYIASASEDLFIDISNVHTGRTVHQIPCRAA  255 (293)
Q Consensus       212 -----------------------------------~~~v~~l~~sp-~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~  255 (293)
                                                         ...+..++|+| ++++++++  ++.|.+||..+++.+..+.....
T Consensus       219 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~  296 (349)
T 1jmx_B          219 FKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDHT  296 (349)
T ss_dssp             C-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSSC
T ss_pred             cCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCCC
Confidence                                               11355678889 99999888  88999999999988888777677


Q ss_pred             cceeEECCCCCeEEEEEcCCCCCCCCc
Q 022716          256 MNSVEWNPKYNLLAYAGDDKNKYQADE  282 (293)
Q Consensus       256 i~~~~~sp~~~~la~~~~d~~~~~~~~  282 (293)
                      +..++|+|++++|++++.++.+++|+.
T Consensus       297 ~~~~~~s~dg~~l~~~~~~~~v~v~d~  323 (349)
T 1jmx_B          297 YYCVAFDKKGDKLYLGGTFNDLAVFNP  323 (349)
T ss_dssp             CCEEEECSSSSCEEEESBSSEEEEEET
T ss_pred             ccceEECCCCCEEEEecCCCeEEEEec
Confidence            889999999999888776655555444

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.91  E-value=1.2e-20  Score=160.02  Aligned_cols=249  Identities=12%  Similarity=0.121  Sum_probs=162.8

Q ss_pred             ccccEEEEEECCCCCeEEEEeCC----CcEEEeecCCCCCCceeEE-EeeCCcCCeeEEEEcCCCCCEEEEEe-CCCeEE
Q 022716           19 HKKKVHSVAWNCTGTKLASGSVD----QTARVWHIEPHGHGKVKDI-ELRGHADSVDQLCWDPKHADLIATAS-GDKTVR   92 (293)
Q Consensus        19 h~~~v~~l~~s~~~~~l~s~~~d----g~v~iw~~~~~~~~~~~~~-~~~~h~~~i~~~~~~~~~~~~l~s~~-~d~~i~   92 (293)
                      |...+..++|+|+|++|++++.+    +.|.+|+++... +....+ ....+......+++  ++ +.|++++ .++.+.
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~-g~~~~~~~~~~~~~~p~~~~~--dg-~~l~~~~~~~~~v~  123 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEK-GTLHLLNTQKTMGADPCYLTT--NG-KNIVTANYSGGSIT  123 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTT-TEEEEEEEEECSSSCEEEEEE--CS-SEEEEEETTTTEEE
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCC-CcEEEeeEeccCCCCcEEEEE--CC-CEEEEEECCCCEEE
Confidence            56778889999999999999886    899999987531 122222 23334445666666  43 4455554 689999


Q ss_pred             EEeCCCCeeeee----eee-----------cCceEEEEEcCCCCEEEEEe-CCCeEEEEEccccce------eeeecccc
Q 022716           93 LWDARSGKCSQQ----AEL-----------SGENINITYKPDGTHIAVGN-RDDELTILDVRKFKP------IHRRKFGY  150 (293)
Q Consensus        93 vwd~~~~~~~~~----~~~-----------~~~~~~~~~~~~~~~l~~~~-~d~~i~l~d~~~~~~------~~~~~~~~  150 (293)
                      +|++........    ...           ..++.+++|+|+|++++++. .++.+.+|++.....      +...   .
T Consensus       124 ~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~---~  200 (361)
T 3scy_A          124 VFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTK---G  200 (361)
T ss_dssp             EEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEE---E
T ss_pred             EEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeec---c
Confidence            999875432211    111           11236799999999776665 478999999865331      1100   0


Q ss_pred             eeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEec-CCCcEEEEeCCCCEE--EEEeec---cCCCeeEEEEccCC
Q 022716          151 EVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGS-ADSLVSLWDISEMLC--VRTFTK---LEWPVRTISFSHTG  224 (293)
Q Consensus       151 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs-~d~~i~iwd~~~~~~--~~~~~~---~~~~v~~l~~sp~~  224 (293)
                      ...          ............++|+|+++++++++ .++.|.+||+.++..  +..+..   +...+..++|+|+|
T Consensus       201 ~~~----------~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg  270 (361)
T 3scy_A          201 TPE----------AFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDG  270 (361)
T ss_dssp             EEE----------EEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTS
T ss_pred             ccc----------ceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCC
Confidence            000          01112233456789999999876666 689999999987643  222322   23456899999999


Q ss_pred             CEEEEecC--CCcEEEEEcC--CCC--EEEEEecCCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeee
Q 022716          225 DYIASASE--DLFIDISNVH--TGR--TVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE  291 (293)
Q Consensus       225 ~~l~s~s~--d~~i~iw~~~--~~~--~~~~~~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~  291 (293)
                      ++|+++..  ++.|.+|++.  +++  .+..+.....++.++|+|++++|++++.+.       +.+++|.++
T Consensus       271 ~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~-------~~v~v~~~d  336 (361)
T 3scy_A          271 KYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRDT-------NVIQIFERD  336 (361)
T ss_dssp             SEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETTT-------TEEEEEEEC
T ss_pred             CEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEECCC-------CCEEEEEEE
Confidence            99866654  5889999985  455  334444445688999999999999988542       345555443

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.90  E-value=1.1e-21  Score=181.54  Aligned_cols=246  Identities=12%  Similarity=0.165  Sum_probs=181.3

Q ss_pred             cEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCee
Q 022716           22 KVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKC  101 (293)
Q Consensus        22 ~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~  101 (293)
                      .|.+++|||||++|++++. +.|++||+........  ..+..|...+..++|+|++ +.|+.++ ++.|.+||+.+++.
T Consensus       110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~--~~l~~~~~~~~~~~~SPDG-~~la~~~-~~~i~~~d~~~g~~  184 (741)
T 2ecf_A          110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAV--RQLTHGEGFATDAKLSPKG-GFVSFIR-GRNLWVIDLASGRQ  184 (741)
T ss_dssp             ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSC--CBCCCSSSCEEEEEECTTS-SEEEEEE-TTEEEEEETTTTEE
T ss_pred             CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceE--EEcccCCcccccccCCCCC-CEEEEEe-CCcEEEEecCCCCE
Confidence            4889999999999999886 9999999975410011  2355677889999999985 5666666 56999999998876


Q ss_pred             eeeeeecCc-----------------eEEEEEcCCCCEEEEEeCCC---------------------------------e
Q 022716          102 SQQAELSGE-----------------NINITYKPDGTHIAVGNRDD---------------------------------E  131 (293)
Q Consensus       102 ~~~~~~~~~-----------------~~~~~~~~~~~~l~~~~~d~---------------------------------~  131 (293)
                      .........                 +..++|+|||++|++++.|+                                 .
T Consensus       185 ~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~  264 (741)
T 2ecf_A          185 MQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVK  264 (741)
T ss_dssp             EECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEE
T ss_pred             EEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeE
Confidence            544332221                 35689999999999988765                                 7


Q ss_pred             EEEEEccc-cceeeee---cccceeeeeEEecCCCEEEEecC---------------CC---------------CEEEEE
Q 022716          132 LTILDVRK-FKPIHRR---KFGYEVNEIAWNMTGEMFFLTTG---------------NA---------------GCYCIA  177 (293)
Q Consensus       132 i~l~d~~~-~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~---------------~~---------------~~~~~~  177 (293)
                      +.+||+.+ .+.....   .....+..+.| |+++.+.+...               ..               .+..++
T Consensus       265 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~  343 (741)
T 2ecf_A          265 LGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLR  343 (741)
T ss_dssp             EEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCE
T ss_pred             EEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceE
Confidence            88899887 6544332   23456788899 98886664321               00               123678


Q ss_pred             ECCCCCEEEEecCCCcEEEEeCC-CCEEEEEeeccCCCeeEE-EEccCCCEEE-EecCCC--cEEEEEcCC-CCEEEEEe
Q 022716          178 IDPMGRYFAVGSADSLVSLWDIS-EMLCVRTFTKLEWPVRTI-SFSHTGDYIA-SASEDL--FIDISNVHT-GRTVHQIP  251 (293)
Q Consensus       178 ~~~~~~~l~~gs~d~~i~iwd~~-~~~~~~~~~~~~~~v~~l-~~sp~~~~l~-s~s~d~--~i~iw~~~~-~~~~~~~~  251 (293)
                      |+|+++++++++.|+.++||.+. .+. ...+..+...+..+ .|+|+|+.|+ +++.|+  .++||++.. +..+..+.
T Consensus       344 ~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~  422 (741)
T 2ecf_A          344 FLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLS  422 (741)
T ss_dssp             ECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECC
T ss_pred             ECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeecc
Confidence            99999999999999988888764 344 67788888888887 5999998775 555555  899999864 55566666


Q ss_pred             cCCCcceeEECCCCCeEEEEEcC
Q 022716          252 CRAAMNSVEWNPKYNLLAYAGDD  274 (293)
Q Consensus       252 ~~~~i~~~~~sp~~~~la~~~~d  274 (293)
                      ....+..++|||++++|+....+
T Consensus       423 ~~~~~~~~~~spdg~~l~~~~~~  445 (741)
T 2ecf_A          423 KAPGMHSASFARNASVYVDSWSN  445 (741)
T ss_dssp             CSCSEEEEEECTTSSEEEEEEEE
T ss_pred             cCCCceEEEECCCCCEEEEEecC
Confidence            56678899999999998877544

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.90  E-value=2.8e-21  Score=185.38  Aligned_cols=273  Identities=11%  Similarity=0.060  Sum_probs=194.2

Q ss_pred             ceeecCccccE-------EEEEECCCCCeEEEEeCC----C--cEEEeecCCCCCCc-----------------------
Q 022716           13 SREYTGHKKKV-------HSVAWNCTGTKLASGSVD----Q--TARVWHIEPHGHGK-----------------------   56 (293)
Q Consensus        13 ~~~~~~h~~~v-------~~l~~s~~~~~l~s~~~d----g--~v~iw~~~~~~~~~-----------------------   56 (293)
                      .+.+++|...+       .+++|+|||+.+++++.+    +  .|.+|++.......                       
T Consensus        92 ~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~  171 (1045)
T 1k32_A           92 IKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTF  171 (1045)
T ss_dssp             EEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCS
T ss_pred             eEEcccCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCC
Confidence            46678898888       999999999977777755    3  46666653211000                       


Q ss_pred             ----------------------eeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCC-CeeeeeeeecCceEE
Q 022716           57 ----------------------VKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS-GKCSQQAELSGENIN  113 (293)
Q Consensus        57 ----------------------~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~-~~~~~~~~~~~~~~~  113 (293)
                                            .....+.+|...+.++.|+++  .++++++.|+.+++|.+.. +.....+..+.....
T Consensus       172 ~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d--~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~  249 (1045)
T 1k32_A          172 ELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH--RIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYP  249 (1045)
T ss_dssp             CCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT--EEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCE
T ss_pred             CccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC--EEEEEEeccCceEEEEEeCCCCcceEecCCCCcce
Confidence                                  001223567788888899875  5777888899999997643 222222323334456


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEEccccceeeeecc------------cceeeeeEEe-cCCCEEEEecC-----------
Q 022716          114 ITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF------------GYEVNEIAWN-MTGEMFFLTTG-----------  169 (293)
Q Consensus       114 ~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~------------~~~~~~v~~~-~~~~~~~~~~~-----------  169 (293)
                      .+|+|||+.++.+ .++.+.+||+...... ....            ...+..+.|+ |++..+.....           
T Consensus       250 ~~~SpDG~~la~~-~~~~i~~~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~~~~i~~~~~~~~  327 (1045)
T 1k32_A          250 RHLNTDGRRILFS-KGGSIYIFNPDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVSGT  327 (1045)
T ss_dssp             EEEEESSSCEEEE-ETTEEEEECTTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEETTEEEEECTTSS
T ss_pred             eeEcCCCCEEEEE-eCCEEEEecCCceEee-eeccCcccccccccccccccceeeecCCCCCEEEEEEcCEEEEEcCCCC
Confidence            7999999999887 4899999998443222 2111            1247788999 88875543321           


Q ss_pred             --------CC-CEEEEEECCCCCEEEEecCCCcEE-EEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEE
Q 022716          170 --------NA-GCYCIAIDPMGRYFAVGSADSLVS-LWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDIS  239 (293)
Q Consensus       170 --------~~-~~~~~~~~~~~~~l~~gs~d~~i~-iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw  239 (293)
                              .. .+..++|+ +++.++.++.++.+. +||+..+... .+..+...+..++|+|+|++|++++.++.|++|
T Consensus       328 ~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~  405 (1045)
T 1k32_A          328 YVLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTV  405 (1045)
T ss_dssp             BEEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             ceEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCce-EecCCccceeeeEECCCCCEEEEECCCCeEEEE
Confidence                    12 46678899 999999998888898 9999877544 445777889999999999999999999999999


Q ss_pred             EcCCCCEEEEE-ecCCCcceeEECCCCCeEEEEEcCC--CCCCCCcceEEEEeee
Q 022716          240 NVHTGRTVHQI-PCRAAMNSVEWNPKYNLLAYAGDDK--NKYQADEGVFRIYGFE  291 (293)
Q Consensus       240 ~~~~~~~~~~~-~~~~~i~~~~~sp~~~~la~~~~d~--~~~~~~~~~~~~~~~~  291 (293)
                      |+.+++..... .+...+.+++|||+|++||+++.++  ....+....+++|+++
T Consensus       406 d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~  460 (1045)
T 1k32_A          406 DLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDME  460 (1045)
T ss_dssp             ETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETT
T ss_pred             ECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECC
Confidence            99999877666 4556789999999999999998754  1111233566777654

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.89  E-value=2.6e-21  Score=185.58  Aligned_cols=257  Identities=11%  Similarity=0.083  Sum_probs=186.5

Q ss_pred             eeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEE
Q 022716           14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL   93 (293)
Q Consensus        14 ~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~v   93 (293)
                      +.+.+|...+.++.|+++ ..+++++.|+.+++|.++.... ..  ..+..|. .+...+|+|++. .|+.+ .++.|.+
T Consensus       197 ~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~-~~--~~l~~~~-~~~~~~~SpDG~-~la~~-~~~~i~~  269 (1045)
T 1k32_A          197 KKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGK-DL--RKHTSFT-DYYPRHLNTDGR-RILFS-KGGSIYI  269 (1045)
T ss_dssp             EEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSC-SC--EECCCCC-SSCEEEEEESSS-CEEEE-ETTEEEE
T ss_pred             EECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCC-cc--eEecCCC-CcceeeEcCCCC-EEEEE-eCCEEEE
Confidence            345789999999999988 6667888899999998764221 11  2344444 356678999764 45554 4899999


Q ss_pred             EeCCCCeeeeeeee------------cCceEEEEEc-CCCCEEEEEeCCCeEEEEEccccceeeeecccc-eeeeeEEec
Q 022716           94 WDARSGKCSQQAEL------------SGENINITYK-PDGTHIAVGNRDDELTILDVRKFKPIHRRKFGY-EVNEIAWNM  159 (293)
Q Consensus        94 wd~~~~~~~~~~~~------------~~~~~~~~~~-~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~-~~~~v~~~~  159 (293)
                      ||+...... .+..            ...+..++|+ |||+.+++++ ++.+.+|++............. .+..+.|+ 
T Consensus       270 ~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-  346 (1045)
T 1k32_A          270 FNPDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-  346 (1045)
T ss_dssp             ECTTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSS-
T ss_pred             ecCCceEee-eeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEEccCCCcceEEeeeEc-
Confidence            998544332 2221            1246789999 9999999887 8899999987665443322222 44455555 


Q ss_pred             CCCEEE---------------------EecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEE
Q 022716          160 TGEMFF---------------------LTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTI  218 (293)
Q Consensus       160 ~~~~~~---------------------~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l  218 (293)
                      ++..+.                     +..+...+..++|+|++++|++++.++.|++||+.+++.......|...+.++
T Consensus       347 dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~  426 (1045)
T 1k32_A          347 TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDF  426 (1045)
T ss_dssp             SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCE
T ss_pred             CCCeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccce
Confidence            332211                     12233567889999999999999999999999999988777666888899999


Q ss_pred             EEccCCCEEEEecCCC----------cEEEEEcCCCCEEEEE-ecCCCcceeEECCCCCeEEEEEcCCCCCCCC
Q 022716          219 SFSHTGDYIASASEDL----------FIDISNVHTGRTVHQI-PCRAAMNSVEWNPKYNLLAYAGDDKNKYQAD  281 (293)
Q Consensus       219 ~~sp~~~~l~s~s~d~----------~i~iw~~~~~~~~~~~-~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~  281 (293)
                      +|||||++|++++.++          .|++||+.+++ +..+ .+...+..++|+|+|++|++++.+.....|+
T Consensus       427 ~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~  499 (1045)
T 1k32_A          427 TISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPD  499 (1045)
T ss_dssp             EECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEEC
T ss_pred             EECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcc
Confidence            9999999998887654          89999999877 4444 3445678899999999999998866544433

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.89  E-value=7.3e-22  Score=178.13  Aligned_cols=223  Identities=13%  Similarity=0.053  Sum_probs=160.3

Q ss_pred             cccEEEEEECCCCCeEEEEeC-CCcEEEeecCCCCCCceeEEEeeCCc-CCeeEEEEcCCCCCEEEEEeC---CCeEEEE
Q 022716           20 KKKVHSVAWNCTGTKLASGSV-DQTARVWHIEPHGHGKVKDIELRGHA-DSVDQLCWDPKHADLIATASG---DKTVRLW   94 (293)
Q Consensus        20 ~~~v~~l~~s~~~~~l~s~~~-dg~v~iw~~~~~~~~~~~~~~~~~h~-~~i~~~~~~~~~~~~l~s~~~---d~~i~vw   94 (293)
                      ..+|.+++|+|||++||+++. ||+++||+++..   .  ...+..|. ..+..+.|+|+  .++++++.   +...++|
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g---~--~~~lt~~~~~~~~~~~~spd--~~l~~~~~~~g~~~~~l~   93 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGG---E--TVKLNREPINSVLDPHYGVG--RVILVRDVSKGAEQHALF   93 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETT---E--EEECCSSCCSEECEECTTCS--EEEEEEECSTTSCCEEEE
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCC---C--cEeeecccccccccccCCCC--eEEEEeccCCCCcceEEE
Confidence            568999999999999999887 999999998531   2  23344555 57899999986  57777765   5556666


Q ss_pred             eCCC---CeeeeeeeecCceEEEEEcCCCCE-EEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCC
Q 022716           95 DARS---GKCSQQAELSGENINITYKPDGTH-IAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGN  170 (293)
Q Consensus        95 d~~~---~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  170 (293)
                      .+..   +... .+.........+|+|+|+. +++...++...+||+.+.+......                     +.
T Consensus        94 ~~~~~~~g~~~-~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~---------------------~~  151 (582)
T 3o4h_A           94 KVNTSRPGEEQ-RLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELAR---------------------LP  151 (582)
T ss_dssp             EEETTSTTCCE-ECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEE---------------------ES
T ss_pred             EEeccCCCccc-cccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeec---------------------CC
Confidence            5432   2222 2222223335688888864 3344445555699987755332211                     01


Q ss_pred             CCEEEEEECCCCCEEEEecCC----CcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCC--cEEEEEcCCC
Q 022716          171 AGCYCIAIDPMGRYFAVGSAD----SLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDL--FIDISNVHTG  244 (293)
Q Consensus       171 ~~~~~~~~~~~~~~l~~gs~d----~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~--~i~iw~~~~~  244 (293)
                      .  .+++++|||+++++++.+    +.|++||+.+++.. .+..+...+..++|||||++|+++..++  .|++||..++
T Consensus       152 ~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~  228 (582)
T 3o4h_A          152 G--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDG  228 (582)
T ss_dssp             S--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTC
T ss_pred             C--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCC
Confidence            1  467889999999988777    78999999887644 6677888899999999999999888888  8999999988


Q ss_pred             CEEEEEe-cCCCcceeE--------ECCCCCeEEEEEcCC
Q 022716          245 RTVHQIP-CRAAMNSVE--------WNPKYNLLAYAGDDK  275 (293)
Q Consensus       245 ~~~~~~~-~~~~i~~~~--------~sp~~~~la~~~~d~  275 (293)
                      +.. .+. +...+..++        |+|+|.++++++.|+
T Consensus       229 ~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g  267 (582)
T 3o4h_A          229 SVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREG  267 (582)
T ss_dssp             CEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETT
T ss_pred             cEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCC
Confidence            876 443 334567777        999998888888775

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.89  E-value=6.6e-21  Score=156.15  Aligned_cols=209  Identities=17%  Similarity=0.172  Sum_probs=151.3

Q ss_pred             EEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCC-Ceeeeeeeec--CceEE
Q 022716           37 SGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS-GKCSQQAELS--GENIN  113 (293)
Q Consensus        37 s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~-~~~~~~~~~~--~~~~~  113 (293)
                      +++.|++|++||+...   .  ...+..|...|.+++|+|++ ..|++++ ++.|.+||+.+ ++........  ..+.+
T Consensus        17 ~~~~~~~i~~~d~~~~---~--~~~~~~~~~~v~~~~~spdg-~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~   89 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTR---K--MRVVWQTPELFEAPNWSPDG-KYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNND   89 (297)
T ss_dssp             -CCCCEEEEEEETTTT---E--EEEEEEESSCCEEEEECTTS-SEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSC
T ss_pred             CCCcceeEEEEeCCCC---c--eeeeccCCcceEeeEECCCC-CEEEEEc-CCeEEEEeCCCCCCceEeccccccccccc
Confidence            4677999999998743   2  22455688899999999975 5677665 88999999988 7665544333  34567


Q ss_pred             EEEcCCCCEEEEEe--CCCeEEEEEc--cccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEE-Ee
Q 022716          114 ITYKPDGTHIAVGN--RDDELTILDV--RKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFA-VG  188 (293)
Q Consensus       114 ~~~~~~~~~l~~~~--~d~~i~l~d~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~g  188 (293)
                      ++|+|+++++++++  .++...+|.+  .+.... ..                     .....+..++|+|+++.++ ++
T Consensus        90 ~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~-~~---------------------~~~~~~~~~~~spdg~~l~~~~  147 (297)
T 2ojh_A           90 HGISPDGALYAISDKVEFGKSAIYLLPSTGGTPR-LM---------------------TKNLPSYWHGWSPDGKSFTYCG  147 (297)
T ss_dssp             CEECTTSSEEEEEECTTTSSCEEEEEETTCCCCE-EC---------------------CSSSSEEEEEECTTSSEEEEEE
T ss_pred             eEECCCCCEEEEEEeCCCCcceEEEEECCCCceE-Ee---------------------ecCCCccceEECCCCCEEEEEE
Confidence            89999999999998  3345555544  332211 10                     1122356788999999877 77


Q ss_pred             cCCCcEEEEeC--CCCEEEEEeeccCCCeeEEEEccCCCEEEEec-CCCcEEEEEcC-CCCEEEEEe-cCCCcceeEECC
Q 022716          189 SADSLVSLWDI--SEMLCVRTFTKLEWPVRTISFSHTGDYIASAS-EDLFIDISNVH-TGRTVHQIP-CRAAMNSVEWNP  263 (293)
Q Consensus       189 s~d~~i~iwd~--~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s-~d~~i~iw~~~-~~~~~~~~~-~~~~i~~~~~sp  263 (293)
                      +.++.+++|++  ..+. ...+..+...+.+++|+|+|++|+.++ .|+.+.+|++. .+..+..+. +...+..++|+|
T Consensus       148 ~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~  226 (297)
T 2ojh_A          148 IRDQVFDIYSMDIDSGV-ETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSP  226 (297)
T ss_dssp             EETTEEEEEEEETTTCC-EEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECT
T ss_pred             CCCCceEEEEEECCCCc-ceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECC
Confidence            88999999985  3443 455667778899999999999887666 58999999986 445555543 334678899999


Q ss_pred             CCCeEEEEEcCC
Q 022716          264 KYNLLAYAGDDK  275 (293)
Q Consensus       264 ~~~~la~~~~d~  275 (293)
                      ++++|++++.++
T Consensus       227 dg~~l~~~~~~~  238 (297)
T 2ojh_A          227 SGDKVVFVSYDA  238 (297)
T ss_dssp             TSSEEEEEEEET
T ss_pred             CCCEEEEEEcCC
Confidence            999999998764

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.89  E-value=7.2e-22  Score=182.37  Aligned_cols=240  Identities=9%  Similarity=0.060  Sum_probs=158.2

Q ss_pred             ccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcC---CeeEEEEcCCCCCEEEEEeCC---------
Q 022716           21 KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHAD---SVDQLCWDPKHADLIATASGD---------   88 (293)
Q Consensus        21 ~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~---~i~~~~~~~~~~~~l~s~~~d---------   88 (293)
                      ..+.+++|+|||+++++ +.||+|++||+.....    ...+.+|..   .|.+++|+|++ +.|++++.+         
T Consensus        17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~----~~~~~~~~~~~~~v~~~~~SpDg-~~l~~~~~~~~~~~~~~~   90 (723)
T 1xfd_A           17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTS----TVLIEGKKIESLRAIRYEISPDR-EYALFSYNVEPIYQHSYT   90 (723)
T ss_dssp             CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCC----EEEECTTTTTTTTCSEEEECTTS-SEEEEEESCCCCSSSCCC
T ss_pred             ccccccEEcCCCcEEEE-eCCCCEEEEECCCCcE----EEEeccccccccccceEEECCCC-CEEEEEecCccceeecce
Confidence            35788999999997766 7899999999975321    123445543   48999999985 567777664         


Q ss_pred             CeEEEEeCCCCeeeeeeeecC---ceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccc-e-------------
Q 022716           89 KTVRLWDARSGKCSQQAELSG---ENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGY-E-------------  151 (293)
Q Consensus        89 ~~i~vwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~-~-------------  151 (293)
                      +.+.+||+.+++.........   .+..++|+|||+.|+.++. +.|.+||+.+....+....+. .             
T Consensus        91 ~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~e  169 (723)
T 1xfd_A           91 GYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEE  169 (723)
T ss_dssp             SEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHH
T ss_pred             eeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEE
Confidence            788899999887532222222   2567899999999999885 799999998765544332211 1             


Q ss_pred             -----eeeeEEecCCCEEEEecCC-----------------CCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEee
Q 022716          152 -----VNEIAWNMTGEMFFLTTGN-----------------AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT  209 (293)
Q Consensus       152 -----~~~v~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~  209 (293)
                           +..+.|+|++..+.....+                 ..+..+.+.++|..    ..+..|.+||+.+++....+.
T Consensus       170 e~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~----~~~~~l~~~d~~~~~~~~~l~  245 (723)
T 1xfd_A          170 EILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSE----NPSISLHVIGLNGPTHDLEMM  245 (723)
T ss_dssp             TTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSC----CCEEEEEEEESSSSCCCEECC
T ss_pred             EeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCC----CCeeEEEEEECCCCceeEEee
Confidence                 1334454444433332211                 01122222222221    112379999998876545555


Q ss_pred             cc------CCCeeEEEEccCCCEEEEecC----CCcEEEEEcCCCCEEEEEe--cCCCc----ceeEECCCCCeEEEE
Q 022716          210 KL------EWPVRTISFSHTGDYIASASE----DLFIDISNVHTGRTVHQIP--CRAAM----NSVEWNPKYNLLAYA  271 (293)
Q Consensus       210 ~~------~~~v~~l~~sp~~~~l~s~s~----d~~i~iw~~~~~~~~~~~~--~~~~i----~~~~~sp~~~~la~~  271 (293)
                      .+      ...+..++|||||++|++.+.    +..|++||..+++....+.  ....+    ..++|+|+|+.|++.
T Consensus       246 ~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~  323 (723)
T 1xfd_A          246 PPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFI  323 (723)
T ss_dssp             CCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEE
T ss_pred             CCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEE
Confidence            43      557899999999999877643    3679999999988665443  22334    389999999988876

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.89  E-value=1.3e-21  Score=170.20  Aligned_cols=212  Identities=13%  Similarity=0.131  Sum_probs=149.2

Q ss_pred             CCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCC-----------ee-----eeeeeecCceEEEEEcCCCCEEE----EE
Q 022716           67 DSVDQLCWDPKHADLIATASGDKTVRLWDARSG-----------KC-----SQQAELSGENINITYKPDGTHIA----VG  126 (293)
Q Consensus        67 ~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~-----------~~-----~~~~~~~~~~~~~~~~~~~~~l~----~~  126 (293)
                      ..++.+++++. ..++++++.|+ +++|+...-           ..     ...+.....+.+++|+|+|++|+    ++
T Consensus        37 ~~~n~lavs~~-~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg  114 (434)
T 2oit_A           37 ERSSLLAVSNK-YGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS  114 (434)
T ss_dssp             SCCBCEEEETT-TTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred             CCccEEEEecC-CCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence            35678888886 46788888887 888864210           10     01122345688999999999999    67


Q ss_pred             eCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCC-CCEEEEecCCCcEEEEeCCCCEEE
Q 022716          127 NRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPM-GRYFAVGSADSLVSLWDISEMLCV  205 (293)
Q Consensus       127 ~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~gs~d~~i~iwd~~~~~~~  205 (293)
                      +.|+.+++||+++...... .....+..        ......+...+.+++|+|+ +.+|++++.||+|++||++++..+
T Consensus       115 s~d~~v~iwd~~~~~~~~~-~~~~~~~~--------~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~  185 (434)
T 2oit_A          115 EYGSIIAFFDVRTFSNEAK-QQKRPFAY--------HKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKV  185 (434)
T ss_dssp             TTEEEEEEEEHHHHHCTTC-SSCCCSEE--------EECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEE
T ss_pred             CCCceEEEEEccccccCCc-CCcceeee--------eeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcce
Confidence            7899999999876410000 00000000        0111234567889999998 789999999999999999998777


Q ss_pred             EEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEecC--------CCcceeEECCCCCeEEEEEc-CCC
Q 022716          206 RTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCR--------AAMNSVEWNPKYNLLAYAGD-DKN  276 (293)
Q Consensus       206 ~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~--------~~i~~~~~sp~~~~la~~~~-d~~  276 (293)
                      ....+|...|.+++|+|+|++|++|+.|+.|++||.+ ++....+...        ..+.+++|++++.++++.+. ++.
T Consensus       186 ~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~  264 (434)
T 2oit_A          186 CATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGT  264 (434)
T ss_dssp             EEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCC
T ss_pred             eeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCc
Confidence            6677788899999999999999999999999999998 5555544321        16889999998877765443 322


Q ss_pred             CCCCCcceEEEEeeec
Q 022716          277 KYQADEGVFRIYGFEN  292 (293)
Q Consensus       277 ~~~~~~~~~~~~~~~~  292 (293)
                        +.....+++|.+.+
T Consensus       265 --~~~~~~v~i~~l~~  278 (434)
T 2oit_A          265 --LETSPDVVMALLPK  278 (434)
T ss_dssp             --SSSCCEEEEEECCC
T ss_pred             --cCCCCceEEEEecc
Confidence              22334577887764

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.88  E-value=3.5e-20  Score=155.03  Aligned_cols=224  Identities=11%  Similarity=0.037  Sum_probs=163.1

Q ss_pred             cEEEEEECCCCCeE-EEEeCCCcEEEeecCCCCCCceeEEEeeC---CcCCeeEEEEcCCCCCEEEEEe-----------
Q 022716           22 KVHSVAWNCTGTKL-ASGSVDQTARVWHIEPHGHGKVKDIELRG---HADSVDQLCWDPKHADLIATAS-----------   86 (293)
Q Consensus        22 ~v~~l~~s~~~~~l-~s~~~dg~v~iw~~~~~~~~~~~~~~~~~---h~~~i~~~~~~~~~~~~l~s~~-----------   86 (293)
                      .+.+++|+|+|+.+ ++++.++.|.+||+....  ....+....   |...+..++|+|++ +.++++.           
T Consensus        35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~~~~~  111 (337)
T 1pby_B           35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGE--TLGRIDLSTPEERVKSLFGAALSPDG-KTLAIYESPVRLELTHFE  111 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETTTCC--EEEEEECCBTTEEEECTTCEEECTTS-SEEEEEEEEEEECSSCEE
T ss_pred             CccceEEcCCCCEEEEEeCCCCeEEEEECCCCC--eEeeEEcCCcccccccccceEECCCC-CEEEEEeccccccccccc
Confidence            48899999999876 556668999999987532  222222221   12256788999975 4566664           


Q ss_pred             -CCCeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEE-
Q 022716           87 -GDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMF-  164 (293)
Q Consensus        87 -~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~-  164 (293)
                       .++.|.+||+.+++....+.....+..++|+|+|++++++  ++.+.+||+++.+.......+.....+.|++++..+ 
T Consensus       112 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~  189 (337)
T 1pby_B          112 VQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVW  189 (337)
T ss_dssp             ECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCC
T ss_pred             ccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEe
Confidence             5799999999988877776666667789999999988888  689999999887765444332211122333333211 


Q ss_pred             ---------------------------------------------EEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeC
Q 022716          165 ---------------------------------------------FLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDI  199 (293)
Q Consensus       165 ---------------------------------------------~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~  199 (293)
                                                                   ....+...+..++++|++++++++  ++.|.+||+
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~  267 (337)
T 1pby_B          190 NQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDL  267 (337)
T ss_dssp             CCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEET
T ss_pred             eeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEEC
Confidence                                                         111223346679999999999888  789999999


Q ss_pred             CCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEecC
Q 022716          200 SEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCR  253 (293)
Q Consensus       200 ~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~  253 (293)
                      ++++.+..+.. ...+.+++|+|+|++|++++.++.|.+||..+++.+..++..
T Consensus       268 ~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~  320 (337)
T 1pby_B          268 EKNASIKRVPL-PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLP  320 (337)
T ss_dssp             TTTEEEEEEEC-SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECG
T ss_pred             CCCcCcceecC-CCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcC
Confidence            99987776653 346789999999999999999999999999999988877643

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.88  E-value=7.8e-20  Score=153.29  Aligned_cols=227  Identities=15%  Similarity=0.233  Sum_probs=152.7

Q ss_pred             eEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCC-CeEEEEeCC--CCeee--eeeeec
Q 022716           34 KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD-KTVRLWDAR--SGKCS--QQAELS  108 (293)
Q Consensus        34 ~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d-~~i~vwd~~--~~~~~--~~~~~~  108 (293)
                      .+++++.|+.|++|+++..  +.........|...+..++|+|++ +.|++++.+ +.|.+|++.  +++..  ..+...
T Consensus         7 l~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~   83 (343)
T 1ri6_A            7 VYIASPESQQIHVWNLNHE--GALTLTQVVDVPGQVQPMVVSPDK-RYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP   83 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTT--SCEEEEEEEECSSCCCCEEECTTS-SEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS
T ss_pred             EEEeCCCCCeEEEEEECCC--CcEEEeeeEecCCCCceEEECCCC-CEEEEeecCCCeEEEEEecCCCCceeeccccccC
Confidence            3455578999999999642  222223334567778899999975 556666665 999999997  55432  334444


Q ss_pred             CceEEEEEcCCCCEEEEEeC-CCeEEEEEcccc---ceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCE
Q 022716          109 GENINITYKPDGTHIAVGNR-DDELTILDVRKF---KPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRY  184 (293)
Q Consensus       109 ~~~~~~~~~~~~~~l~~~~~-d~~i~l~d~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (293)
                      ..+..++|+|+++++++++. ++.+.+||+...   .....                     ......+.+++++|++++
T Consensus        84 ~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~---------------------~~~~~~~~~~~~s~dg~~  142 (343)
T 1ri6_A           84 GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDV---------------------VEGLDGCHSANISPDNRT  142 (343)
T ss_dssp             SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEE---------------------ECCCTTBCCCEECTTSSE
T ss_pred             CCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccc---------------------ccCCCCceEEEECCCCCE
Confidence            56778999999998877765 889999998421   11111                     112234567889999998


Q ss_pred             EEEec-CCCcEEEEeCCC-CEEEE----Eeec-cCCCeeEEEEccCCCEEEE-ecCCCcEEEEEcCC--CCE--EEEEe-
Q 022716          185 FAVGS-ADSLVSLWDISE-MLCVR----TFTK-LEWPVRTISFSHTGDYIAS-ASEDLFIDISNVHT--GRT--VHQIP-  251 (293)
Q Consensus       185 l~~gs-~d~~i~iwd~~~-~~~~~----~~~~-~~~~v~~l~~sp~~~~l~s-~s~d~~i~iw~~~~--~~~--~~~~~-  251 (293)
                      +++++ .++.|.+||+.+ +....    .+.. ....+..++|+|++++++. +..++.|.+|++..  ++.  ..... 
T Consensus       143 l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~  222 (343)
T 1ri6_A          143 LWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDM  222 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEEC
T ss_pred             EEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccc
Confidence            77776 899999999986 54321    2222 2347889999999997754 45889999999953  433  22222 


Q ss_pred             --c----CCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeee
Q 022716          252 --C----RAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE  291 (293)
Q Consensus       252 --~----~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~  291 (293)
                        .    ...+..++|+|++++|++++..       .+.+++|+++
T Consensus       223 ~~~~~~~~~~~~~i~~s~dg~~l~v~~~~-------~~~i~v~d~~  261 (343)
T 1ri6_A          223 MPENFSDTRWAADIHITPDGRHLYACDRT-------ASLITVFSVS  261 (343)
T ss_dssp             SCTTCCSCCCEEEEEECTTSSEEEEEETT-------TTEEEEEEEC
T ss_pred             cCccccccCCccceEECCCCCEEEEEecC-------CCEEEEEEEc
Confidence              1    1134479999999988766532       2456666654

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.88  E-value=8.3e-21  Score=165.16  Aligned_cols=202  Identities=12%  Similarity=0.126  Sum_probs=145.6

Q ss_pred             cccEEEEEECCCCCeEEEEeCCCcEEEeecCCC-------CC-Ccee---EEEeeCCcCCeeEEEEcCCCCCEEE----E
Q 022716           20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPH-------GH-GKVK---DIELRGHADSVDQLCWDPKHADLIA----T   84 (293)
Q Consensus        20 ~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~-------~~-~~~~---~~~~~~h~~~i~~~~~~~~~~~~l~----s   84 (293)
                      ...+..+++++++.++++|+.|+ +++|+....       .. ....   ......|...|.+++|+|++ .+|+    +
T Consensus        36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg-~~lav~~~s  113 (434)
T 2oit_A           36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDN-LTLSACMMS  113 (434)
T ss_dssp             CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTS-CEEEEEEEE
T ss_pred             CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCC-CEEEEEEec
Confidence            34688999999999999999988 899865310       00 0000   00112356779999999975 5666    8


Q ss_pred             EeCCCeEEEEeCCCC--------eee---eeee-ecCceEEEEEcCC-CCEEEEEeCCCeEEEEEccccceeeeecccce
Q 022716           85 ASGDKTVRLWDARSG--------KCS---QQAE-LSGENINITYKPD-GTHIAVGNRDDELTILDVRKFKPIHRRKFGYE  151 (293)
Q Consensus        85 ~~~d~~i~vwd~~~~--------~~~---~~~~-~~~~~~~~~~~~~-~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~  151 (293)
                      ++.|+.|++||+.++        +..   ..+. +...+.+++|+|+ +..|++++.|+++++||+++......      
T Consensus       114 gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~------  187 (434)
T 2oit_A          114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCA------  187 (434)
T ss_dssp             TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEE------
T ss_pred             cCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceee------
Confidence            889999999998654        111   1111 3456889999998 78999999999999999987532211      


Q ss_pred             eeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccC-------CCeeEEEEccCC
Q 022716          152 VNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLE-------WPVRTISFSHTG  224 (293)
Q Consensus       152 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~-------~~v~~l~~sp~~  224 (293)
                                    ...+...+.+++|+|++++|++|+.||+|++||++ +.....+..+.       ..|.+++|++++
T Consensus       188 --------------~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~  252 (434)
T 2oit_A          188 --------------TLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTY  252 (434)
T ss_dssp             --------------EECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETT
T ss_pred             --------------ccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCc
Confidence                          11234567899999999999999999999999998 44444444332       378999999999


Q ss_pred             CEEEEe-cCCC------cEEEEEcCCC
Q 022716          225 DYIASA-SEDL------FIDISNVHTG  244 (293)
Q Consensus       225 ~~l~s~-s~d~------~i~iw~~~~~  244 (293)
                      .++++. +.||      .+++|++...
T Consensus       253 ~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          253 VFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             EEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             eEEEEEccCCCccCCCCceEEEEeccC
Confidence            887543 3443      3889998764

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.87  E-value=5.7e-20  Score=169.31  Aligned_cols=241  Identities=16%  Similarity=0.181  Sum_probs=171.4

Q ss_pred             EEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCc-----------------CCeeEEEEcCCCCCEEEEE
Q 022716           23 VHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHA-----------------DSVDQLCWDPKHADLIATA   85 (293)
Q Consensus        23 v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~-----------------~~i~~~~~~~~~~~~l~s~   85 (293)
                      +..+.|.  |+.+++++.|+ | +||+....... .  .+..|.                 ..|.+++|+|+ ..++++ 
T Consensus        28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~-~--~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~-   98 (706)
T 2z3z_A           28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQ-T--TRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLF-   98 (706)
T ss_dssp             CTTCEEE--TTEEEEEETTE-E-EEEC--------C--EEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEE-
T ss_pred             CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEee-E--EeechhHhhhhccchhccccccccCceeEEECCC-CeEEEE-
Confidence            4557777  77888888888 8 99987543200 1  111222                 46899999997 545544 


Q ss_pred             eCCCeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccc-----cceeeeecccce---------
Q 022716           86 SGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRK-----FKPIHRRKFGYE---------  151 (293)
Q Consensus        86 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~-----~~~~~~~~~~~~---------  151 (293)
                       .++.+++||+.+++..........+..++|+|||+.++.+ .++.|.+||+.+     .+..+....+..         
T Consensus        99 -~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~  176 (706)
T 2z3z_A           99 -TQGGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVH  176 (706)
T ss_dssp             -ETTEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCG
T ss_pred             -ECCEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchh
Confidence             4599999999988766555555566778999999999985 689999999987     655443333222         


Q ss_pred             ------eeeeEEecCCCEEEEec---------------------------------C-----------------------
Q 022716          152 ------VNEIAWNMTGEMFFLTT---------------------------------G-----------------------  169 (293)
Q Consensus       152 ------~~~v~~~~~~~~~~~~~---------------------------------~-----------------------  169 (293)
                            +..+.|+|++..+....                                 .                       
T Consensus       177 ~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~  256 (706)
T 2z3z_A          177 QREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPK  256 (706)
T ss_dssp             GGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCT
T ss_pred             hhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCC
Confidence                  47889999988766543                                 0                       


Q ss_pred             CCCEEEEEECCCCCEEEEecCCC-----cEEEEeCCCCEEEEEee-c-cCC---CeeEEEEcc--CCCEEEEecCCCcEE
Q 022716          170 NAGCYCIAIDPMGRYFAVGSADS-----LVSLWDISEMLCVRTFT-K-LEW---PVRTISFSH--TGDYIASASEDLFID  237 (293)
Q Consensus       170 ~~~~~~~~~~~~~~~l~~gs~d~-----~i~iwd~~~~~~~~~~~-~-~~~---~v~~l~~sp--~~~~l~s~s~d~~i~  237 (293)
                      ...+.+++|+|+++.|++++.++     .|.+||+.++.....+. . +..   .+..++|+|  +|+++++++.|+.+.
T Consensus       257 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~  336 (706)
T 2z3z_A          257 EKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNH  336 (706)
T ss_dssp             TCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCE
T ss_pred             ceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccE
Confidence            12356789999999999987775     89999999883333332 2 221   346789999  999999999999999


Q ss_pred             EEEcC-CCCEEEEEec-CCCcce-eEECCCCCeEEEEEcC
Q 022716          238 ISNVH-TGRTVHQIPC-RAAMNS-VEWNPKYNLLAYAGDD  274 (293)
Q Consensus       238 iw~~~-~~~~~~~~~~-~~~i~~-~~~sp~~~~la~~~~d  274 (293)
                      ||.+. ++..+..+.. ...+.. ++|+|+++.|++++.+
T Consensus       337 l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~  376 (706)
T 2z3z_A          337 LYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTE  376 (706)
T ss_dssp             EEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESS
T ss_pred             EEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecC
Confidence            99886 5666666643 334665 7999999988887765

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.87  E-value=2.4e-20  Score=172.15  Aligned_cols=269  Identities=11%  Similarity=0.090  Sum_probs=164.5

Q ss_pred             eeecCccc---cEEEEEECCCCCeEEEEeCC---------CcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCE
Q 022716           14 REYTGHKK---KVHSVAWNCTGTKLASGSVD---------QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADL   81 (293)
Q Consensus        14 ~~~~~h~~---~v~~l~~s~~~~~l~s~~~d---------g~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~   81 (293)
                      +.+.+|..   .|.+++|||||++|++++.+         +.+.+||++....  .......+|...+..++|+|++ +.
T Consensus        51 ~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~--~~l~~~~~~~~~~~~~~~SPdG-~~  127 (723)
T 1xfd_A           51 VLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP--QSLDPPEVSNAKLQYAGWGPKG-QQ  127 (723)
T ss_dssp             EEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC--EECCCTTCCSCCCSBCCBCSST-TC
T ss_pred             EEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce--EeccCCccccccccccEECCCC-CE
Confidence            34445554   49999999999999999875         7788999975421  1111122455558889999986 45


Q ss_pred             EEEEeCCCeEEEEeCCCCeeeeeeeec-C------------------ceEEEEEcCCCCEEEEEeCCC-eEEEEEccccc
Q 022716           82 IATASGDKTVRLWDARSGKCSQQAELS-G------------------ENINITYKPDGTHIAVGNRDD-ELTILDVRKFK  141 (293)
Q Consensus        82 l~s~~~d~~i~vwd~~~~~~~~~~~~~-~------------------~~~~~~~~~~~~~l~~~~~d~-~i~l~d~~~~~  141 (293)
                      |+.++. +.|++||+.+++........ .                  ....++|+|||+.|++++.++ .+.+|++....
T Consensus       128 la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~  206 (723)
T 1xfd_A          128 LIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYT  206 (723)
T ss_dssp             EEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCS
T ss_pred             EEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccC
Confidence            666665 79999999888765443321 1                  125799999999999987553 34444432111


Q ss_pred             e-----eeeecc------cceeeeeEEecCCCE--EEEecC------CCCEEEEEECCCCCEEEEecC----CCcEEEEe
Q 022716          142 P-----IHRRKF------GYEVNEIAWNMTGEM--FFLTTG------NAGCYCIAIDPMGRYFAVGSA----DSLVSLWD  198 (293)
Q Consensus       142 ~-----~~~~~~------~~~~~~v~~~~~~~~--~~~~~~------~~~~~~~~~~~~~~~l~~gs~----d~~i~iwd  198 (293)
                      .     .....+      ........|+.....  ..+..+      ...+..++|+|+|+++++.+.    +..|.+||
T Consensus       207 ~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d  286 (723)
T 1xfd_A          207 GSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCD  286 (723)
T ss_dssp             SSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEE
T ss_pred             CcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEe
Confidence            0     000000      001122233332211  112211      345678999999998877643    35799999


Q ss_pred             CCCCEEEEEeecc-CCCe----eEEEEccCCCEEEE--ecCCC------cEEEEEc-CCCCE--EEEEec-CCCcce-eE
Q 022716          199 ISEMLCVRTFTKL-EWPV----RTISFSHTGDYIAS--ASEDL------FIDISNV-HTGRT--VHQIPC-RAAMNS-VE  260 (293)
Q Consensus       199 ~~~~~~~~~~~~~-~~~v----~~l~~sp~~~~l~s--~s~d~------~i~iw~~-~~~~~--~~~~~~-~~~i~~-~~  260 (293)
                      +.+++....+..+ ...+    ..++|+|||+.|+.  +..|+      .|++||. .++..  ...+.. ...+.. ++
T Consensus       287 ~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~  366 (723)
T 1xfd_A          287 ATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILA  366 (723)
T ss_dssp             TTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEE
T ss_pred             CCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeE
Confidence            9988766555433 3333    37899999997765  44666      4777773 33331  333332 233444 69


Q ss_pred             ECCCCCeEEEEEcCCCCCCCCcceEEEEeee
Q 022716          261 WNPKYNLLAYAGDDKNKYQADEGVFRIYGFE  291 (293)
Q Consensus       261 ~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~  291 (293)
                      |+|+++.|++.+.+.     ..+..+||.++
T Consensus       367 ~spdg~~l~~~~~~~-----~~~~~~l~~~~  392 (723)
T 1xfd_A          367 YDEKGNKIYFLSTED-----LPRRRQLYSAN  392 (723)
T ss_dssp             EETTTTEEEEEESSS-----CTTCCEEEEEC
T ss_pred             EcCCCCEEEEEEcCC-----CCcceEEEEEe
Confidence            999999998887652     11345666653

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.86  E-value=4.3e-19  Score=150.99  Aligned_cols=245  Identities=11%  Similarity=0.144  Sum_probs=161.6

Q ss_pred             cccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeE-EEeeCCcCCeeEEEEcCCCCC-EEEEEe-----------
Q 022716           20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKD-IELRGHADSVDQLCWDPKHAD-LIATAS-----------   86 (293)
Q Consensus        20 ~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~-~~~~~h~~~i~~~~~~~~~~~-~l~s~~-----------   86 (293)
                      ...+..++|+|+|++|++++.+ .|.+|+++..  +.... .....+ +....++++|++.. +++++.           
T Consensus        39 ~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~--g~~~~~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~  114 (365)
T 1jof_A           39 DEPISWMTFDHERKNIYGAAMK-KWSSFAVKSP--TEIVHEASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPF  114 (365)
T ss_dssp             TCCCSEEEECTTSSEEEEEEBT-EEEEEEEEET--TEEEEEEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEE
T ss_pred             CCCCcEEEECCCCCEEEEEccc-eEEEEEECCC--CCEEEeeEeecC-CCCccEEECCCCCEEEEEEecCCcceecccee
Confidence            3468899999999999999888 9999998621  12211 111111 22445788887543 345553           


Q ss_pred             --CCCeEEEEeCC-CCeeeeeee-----ecCceEEEEEcCCCCEEEEEeC-CCeEEEEEcc-ccceeeeecccceeeeeE
Q 022716           87 --GDKTVRLWDAR-SGKCSQQAE-----LSGENINITYKPDGTHIAVGNR-DDELTILDVR-KFKPIHRRKFGYEVNEIA  156 (293)
Q Consensus        87 --~d~~i~vwd~~-~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~-d~~i~l~d~~-~~~~~~~~~~~~~~~~v~  156 (293)
                        .++.+.+|++. .++......     ....+..++|+|||++++++.. ++.|.+||+. +.+.....       .+.
T Consensus       115 ~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~-------~~~  187 (365)
T 1jof_A          115 YKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVG-------SVD  187 (365)
T ss_dssp             SSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEE-------EEE
T ss_pred             ecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEee-------eEe
Confidence              68999999997 455443332     2346778999999998887764 6899999987 43321110       000


Q ss_pred             EecCCCEEEEecCCCCEEEEEECCCCCEEEEecC-CCcEEEEeCC--CCEEE---EEeecc-------CC------CeeE
Q 022716          157 WNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSA-DSLVSLWDIS--EMLCV---RTFTKL-------EW------PVRT  217 (293)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~-d~~i~iwd~~--~~~~~---~~~~~~-------~~------~v~~  217 (293)
                               ...+...+..++|+|+++++++++. ++.|.+|++.  +++..   ..+...       ..      .+..
T Consensus       188 ---------~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  258 (365)
T 1jof_A          188 ---------APDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRAD  258 (365)
T ss_dssp             ---------CSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEE
T ss_pred             ---------cCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCccccccccccccc
Confidence                     0011334678899999998877664 7899999764  45432   222211       11      4789


Q ss_pred             EE-EccCCCEEEEecCC-C-----cEEEEEcC-CCCEEE---EEe-cCCCcceeEECC---CCCeEEEEEcCCCCCCCCc
Q 022716          218 IS-FSHTGDYIASASED-L-----FIDISNVH-TGRTVH---QIP-CRAAMNSVEWNP---KYNLLAYAGDDKNKYQADE  282 (293)
Q Consensus       218 l~-~sp~~~~l~s~s~d-~-----~i~iw~~~-~~~~~~---~~~-~~~~i~~~~~sp---~~~~la~~~~d~~~~~~~~  282 (293)
                      ++ |+|||++|++++.+ .     .|.+|++. +++...   ... .......++|+|   ++++|++++.+       .
T Consensus       259 i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~-------~  331 (365)
T 1jof_A          259 VCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQ-------E  331 (365)
T ss_dssp             EEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSS-------S
T ss_pred             EEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcC-------C
Confidence            99 99999998776543 2     89999996 566443   133 234578899999   89999999865       2


Q ss_pred             ceEEEEeee
Q 022716          283 GVFRIYGFE  291 (293)
Q Consensus       283 ~~~~~~~~~  291 (293)
                      +.++||+++
T Consensus       332 ~~v~v~~~~  340 (365)
T 1jof_A          332 GWLEIYRWK  340 (365)
T ss_dssp             CEEEEEEEE
T ss_pred             CeEEEEEEc
Confidence            567777665

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.86  E-value=3.3e-19  Score=152.40  Aligned_cols=269  Identities=12%  Similarity=0.062  Sum_probs=176.0

Q ss_pred             ccceeecCccccEEE-----EEECCCCCeEEEEeC-CCc--EEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEE
Q 022716           11 LHSREYTGHKKKVHS-----VAWNCTGTKLASGSV-DQT--ARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLI   82 (293)
Q Consensus        11 ~~~~~~~~h~~~v~~-----l~~s~~~~~l~s~~~-dg~--v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l   82 (293)
                      ...+.++.|......     .+|||||++|+.++. +|.  |.+||++..   ... ....++...+..+.|+|++ +.|
T Consensus        21 ~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g---~~~-~lt~~~~~~~~~~~~spdg-~~l   95 (388)
T 3pe7_A           21 AQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQ---VAT-QLTEGRGDNTFGGFLSPDD-DAL   95 (388)
T ss_dssp             CEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTC---EEE-ECCCSSCBCSSSCEECTTS-SEE
T ss_pred             cceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCC---ceE-EeeeCCCCCccceEEcCCC-CEE
Confidence            345667777776766     899999999998887 775  666676532   221 1233455555567899975 577


Q ss_pred             EEEeCCCeEEEEeCCCCeeeeeeeecCceE---EEEEcCCCCEEEEEe----------------------CCCeEEEEEc
Q 022716           83 ATASGDKTVRLWDARSGKCSQQAELSGENI---NITYKPDGTHIAVGN----------------------RDDELTILDV  137 (293)
Q Consensus        83 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~----------------------~d~~i~l~d~  137 (293)
                      +.++.++.+.+||+.+++.......+....   ...++|+++.++...                      .+..|.+||+
T Consensus        96 ~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~  175 (388)
T 3pe7_A           96 FYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDL  175 (388)
T ss_dssp             EEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEET
T ss_pred             EEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEEC
Confidence            788889999999999988766555544422   234589999887432                      3467999999


Q ss_pred             cccceeeeecccceeeeeEEec-CCCEEEEecCC----------------------------CCEEEEEECCCCCEEEEe
Q 022716          138 RKFKPIHRRKFGYEVNEIAWNM-TGEMFFLTTGN----------------------------AGCYCIAIDPMGRYFAVG  188 (293)
Q Consensus       138 ~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~l~~g  188 (293)
                      .+.+..........+..+.|+| ++..+.+....                            ..+...+|+|+|+.|+..
T Consensus       176 ~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~  255 (388)
T 3pe7_A          176 KTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYV  255 (388)
T ss_dssp             TTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEE
T ss_pred             CCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEE
Confidence            8876554444444567788888 66554432210                            024567899999977654


Q ss_pred             cCC-----CcEEEEeCCCCEEE--EEeeccC---CCeeEEEEccCCCEEEEe---------cCCCcEEEEEcCCCCEEEE
Q 022716          189 SAD-----SLVSLWDISEMLCV--RTFTKLE---WPVRTISFSHTGDYIASA---------SEDLFIDISNVHTGRTVHQ  249 (293)
Q Consensus       189 s~d-----~~i~iwd~~~~~~~--~~~~~~~---~~v~~l~~sp~~~~l~s~---------s~d~~i~iw~~~~~~~~~~  249 (293)
                      +.+     ..|.+||+.+++..  ..+.++.   .....++|+|||+.|+..         ..+..|++||..+++....
T Consensus       256 ~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l  335 (388)
T 3pe7_A          256 SYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRV  335 (388)
T ss_dssp             EEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEE
T ss_pred             ecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEe
Confidence            432     23999999887632  2222210   012224799999988754         4567899999988765333


Q ss_pred             EecCC-----------CcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeee
Q 022716          250 IPCRA-----------AMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE  291 (293)
Q Consensus       250 ~~~~~-----------~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~  291 (293)
                      .....           .+..++|+|+|+.|++++...       +..+||-++
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~-------g~~~l~~~~  381 (388)
T 3pe7_A          336 ARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVH-------GKPALYLAT  381 (388)
T ss_dssp             EECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTT-------SSCEEEEEE
T ss_pred             ccccCcccccccccccCCCCccCCCCCCEEEEEecCC-------CceeEEEEE
Confidence            33333           478899999999999988542       445677665

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.85  E-value=9.1e-20  Score=164.45  Aligned_cols=227  Identities=12%  Similarity=0.048  Sum_probs=165.2

Q ss_pred             eeecCcc-ccEEEEEECCCCCeEEEEeC---CCcEEEeecCC--CCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeC
Q 022716           14 REYTGHK-KKVHSVAWNCTGTKLASGSV---DQTARVWHIEP--HGHGKVKDIELRGHADSVDQLCWDPKHADLIATASG   87 (293)
Q Consensus        14 ~~~~~h~-~~v~~l~~s~~~~~l~s~~~---dg~v~iw~~~~--~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~   87 (293)
                      +.++.|. ..+..++|+|| +.+++++.   +...++|.++.  ....  .  .+.... .+...+|+|++..++++.+.
T Consensus        57 ~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~--~--~l~~~~-~~~~~~~s~dg~~~~~~s~~  130 (582)
T 3o4h_A           57 VKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEE--Q--RLEAVK-PMRILSGVDTGEAVVFTGAT  130 (582)
T ss_dssp             EECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCC--E--ECTTSC-SBEEEEEEECSSCEEEEEEC
T ss_pred             EeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCcc--c--cccCCC-CceeeeeCCCCCeEEEEecC
Confidence            4455666 68999999999 77777765   56677876653  2211  1  222222 23355777776565555555


Q ss_pred             CCeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCC----CeEEEEEccccceeeeecccceeeeeEEecCCCE
Q 022716           88 DKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRD----DELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEM  163 (293)
Q Consensus        88 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d----~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~  163 (293)
                      ++.+.+||+.+++.........  .+++|+|||+.++.++.+    ..|.+||+.+.+...                   
T Consensus       131 ~~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~-------------------  189 (582)
T 3o4h_A          131 EDRVALYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRV-------------------  189 (582)
T ss_dssp             SSCEEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEE-------------------
T ss_pred             CCCceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceE-------------------
Confidence            5555699999887665554444  788999999999988876    789999987655332                   


Q ss_pred             EEEecCCCCEEEEEECCCCCEEEEecCCC--cEEEEeCCCCEEEEEeeccCCCeeEEE--------EccCCCEEEEecCC
Q 022716          164 FFLTTGNAGCYCIAIDPMGRYFAVGSADS--LVSLWDISEMLCVRTFTKLEWPVRTIS--------FSHTGDYIASASED  233 (293)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~l~~gs~d~--~i~iwd~~~~~~~~~~~~~~~~v~~l~--------~sp~~~~l~s~s~d  233 (293)
                        +..+...+..++|+|||+.|+++..++  .|++||+.+++.. .+..+...+..++        |+|||..+++++.|
T Consensus       190 --l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~  266 (582)
T 3o4h_A          190 --FDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARRE  266 (582)
T ss_dssp             --ECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEET
T ss_pred             --eecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcC
Confidence              122334456789999999999888888  8999999988776 6777777777777        99999889999999


Q ss_pred             CcEEEEEcCCCCEEEEEecCCCcceeEECCCCCeEEEEEcCC
Q 022716          234 LFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDK  275 (293)
Q Consensus       234 ~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~d~  275 (293)
                      +.+++|++  ++...  .....+.+++|+ ++.++++++.+.
T Consensus       267 g~~~l~~~--g~~~~--~~~~~v~~~~~s-dg~~l~~~s~~~  303 (582)
T 3o4h_A          267 GRSAVFID--GERVE--APQGNHGRVVLW-RGKLVTSHTSLS  303 (582)
T ss_dssp             TEEEEEET--TEEEC--CCSSEEEEEEEE-TTEEEEEEEETT
T ss_pred             CcEEEEEE--CCeec--cCCCceEEEEec-CCEEEEEEcCCC
Confidence            99999999  55443  233568899999 899888888764

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.85  E-value=2.9e-18  Score=143.38  Aligned_cols=200  Identities=12%  Similarity=0.113  Sum_probs=147.6

Q ss_pred             EcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeC-CCeEEEEEccccce-eeeecccce
Q 022716           74 WDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNR-DDELTILDVRKFKP-IHRRKFGYE  151 (293)
Q Consensus        74 ~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~~i~l~d~~~~~~-~~~~~~~~~  151 (293)
                      |.+....++++++.++.|++||..+++.............++|+|+|+++++++. ++.+.+||+.+... ......+..
T Consensus         5 ~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~   84 (331)
T 3u4y_A            5 FQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFVDTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQS   84 (331)
T ss_dssp             --CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEEEEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSS
T ss_pred             EcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcceEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCC
Confidence            4444455688889999999999999988776665444448999999997777665 88999999988776 555544555


Q ss_pred             eee-eEEecCCCEEEEecCC-----------------------CCEEEEEECCCCCEE-EEecCCCc-EEEEeCCCCEEE
Q 022716          152 VNE-IAWNMTGEMFFLTTGN-----------------------AGCYCIAIDPMGRYF-AVGSADSL-VSLWDISEMLCV  205 (293)
Q Consensus       152 ~~~-v~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~l-~~gs~d~~-i~iwd~~~~~~~  205 (293)
                      ... +.|++++..++.....                       .....++++|+++++ ++...++. |.+|++.....+
T Consensus        85 ~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~  164 (331)
T 3u4y_A           85 SMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVL  164 (331)
T ss_dssp             CCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCE
T ss_pred             CccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcE
Confidence            555 8888888766643332                       123578999999854 55566688 999998753222


Q ss_pred             ----EEeeccCCCeeEEEEccCCCEE-EEecCCCcEEEEEcCCCCE---EEEEecCCCcceeEECCCCCeEEEEEc
Q 022716          206 ----RTFTKLEWPVRTISFSHTGDYI-ASASEDLFIDISNVHTGRT---VHQIPCRAAMNSVEWNPKYNLLAYAGD  273 (293)
Q Consensus       206 ----~~~~~~~~~v~~l~~sp~~~~l-~s~s~d~~i~iw~~~~~~~---~~~~~~~~~i~~~~~sp~~~~la~~~~  273 (293)
                          .........+..++|+|+|+++ +++..++.|.+||..+++.   +..+.....+..++|+|+++++++++.
T Consensus       165 ~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~  240 (331)
T 3u4y_A          165 FDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTE  240 (331)
T ss_dssp             EEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEECS
T ss_pred             eecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEEEc
Confidence                1222334568999999999965 5556789999999999887   777877778899999999997776654

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.84  E-value=3.6e-18  Score=143.87  Aligned_cols=214  Identities=13%  Similarity=0.110  Sum_probs=162.3

Q ss_pred             cCCeeEEEEcCCCCCEEEEEeC-------CCeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEe-CCCeEEEEEc
Q 022716           66 ADSVDQLCWDPKHADLIATASG-------DKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGN-RDDELTILDV  137 (293)
Q Consensus        66 ~~~i~~~~~~~~~~~~l~s~~~-------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~l~d~  137 (293)
                      ...+..++++|++. .++.++.       ++.|.+||..+++....+.....+..++++|+|+.++++. .++.+.+||+
T Consensus        40 ~~~~~~~~~s~dg~-~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~  118 (353)
T 3vgz_A           40 GKGAYEMAYSQQEN-ALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDA  118 (353)
T ss_dssp             ESSEEEEEEETTTT-EEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             ccCccceEECCCCC-EEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence            34577889999754 4445543       6789999999998888777777788899999999666554 5799999999


Q ss_pred             cccceeeeecccc----------eeeeeEEecCCCEEEEec-C-C---------------------CCEEEEEECCCCCE
Q 022716          138 RKFKPIHRRKFGY----------EVNEIAWNMTGEMFFLTT-G-N---------------------AGCYCIAIDPMGRY  184 (293)
Q Consensus       138 ~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~~~-~-~---------------------~~~~~~~~~~~~~~  184 (293)
                      ++.+.......+.          .+..+.|++++..+++.. . .                     ..+..++++|++++
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~  198 (353)
T 3vgz_A          119 KTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKR  198 (353)
T ss_dssp             TTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTE
T ss_pred             CCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCE
Confidence            8887766554422          257788999887666544 1 1                     11345788999999


Q ss_pred             EEEecCCCcEEEEeCCCCEEEEEeec----cCCCeeEEEEccCCCEEEEec-CCCcEEEEEcCCCCEEEEEecCCCccee
Q 022716          185 FAVGSADSLVSLWDISEMLCVRTFTK----LEWPVRTISFSHTGDYIASAS-EDLFIDISNVHTGRTVHQIPCRAAMNSV  259 (293)
Q Consensus       185 l~~gs~d~~i~iwd~~~~~~~~~~~~----~~~~v~~l~~sp~~~~l~s~s-~d~~i~iw~~~~~~~~~~~~~~~~i~~~  259 (293)
                      +++++.++.|.+||..+++....+..    +...+..++|+|+|++++.++ .++.|.+||..+++.+..+....+ ..+
T Consensus       199 l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~  277 (353)
T 3vgz_A          199 LYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPES-LAV  277 (353)
T ss_dssp             EEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSC-CCE
T ss_pred             EEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC-ceE
Confidence            99999999999999999988777654    344678899999999776665 559999999999998887775544 679


Q ss_pred             EECCCCCeEEEEE-cCCCCCCCC
Q 022716          260 EWNPKYNLLAYAG-DDKNKYQAD  281 (293)
Q Consensus       260 ~~sp~~~~la~~~-~d~~~~~~~  281 (293)
                      +|+|+++++.+++ .++.+++++
T Consensus       278 ~~s~dg~~l~v~~~~~~~v~~~d  300 (353)
T 3vgz_A          278 LFNPARNEAYVTHRQAGKVSVID  300 (353)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEE
T ss_pred             EECCCCCEEEEEECCCCeEEEEE
Confidence            9999999766665 455444444

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.84  E-value=1.8e-20  Score=173.05  Aligned_cols=239  Identities=12%  Similarity=0.100  Sum_probs=151.3

Q ss_pred             EEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcC---CeeEEEEcCCCCCEEEEEeC---------CCeEE
Q 022716           25 SVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHAD---SVDQLCWDPKHADLIATASG---------DKTVR   92 (293)
Q Consensus        25 ~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~---~i~~~~~~~~~~~~l~s~~~---------d~~i~   92 (293)
                      +++|+|+|++ +..+.|+.|++||+....   .. ..+.+|..   .+.+++|+|++ +.|++++.         ++.|+
T Consensus        20 ~~~~s~dg~~-~~~~~d~~i~~~~~~~g~---~~-~~~~~~~~~~~~~~~~~~SpDg-~~la~~~~~~~~~~~s~~~~i~   93 (719)
T 1z68_A           20 FPNWISGQEY-LHQSADNNIVLYNIETGQ---SY-TILSNRTMKSVNASNYGLSPDR-QFVYLESDYSKLWRYSYTATYY   93 (719)
T ss_dssp             CCEESSSSEE-EEECTTSCEEEEESSSCC---EE-EEECHHHHHTTTCSEEEECTTS-SEEEEEEEEEECSSSCEEEEEE
T ss_pred             ccEECCCCeE-EEEcCCCCEEEEEcCCCc---EE-EEEccccccccceeeEEECCCC-CeEEEEecCceeEEeecceEEE
Confidence            7899999954 445569999999997532   11 12333332   38899999985 56666665         78999


Q ss_pred             EEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCC
Q 022716           93 LWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAG  172 (293)
Q Consensus        93 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  172 (293)
                      +||+.+++..........+..++|+|||+.|+.+. ++.|.+||+.+....+....+...  ..++-....+.-......
T Consensus        94 ~~d~~~g~~~~~~~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~--~v~~g~~~~v~~ee~~~~  170 (719)
T 1z68_A           94 IYDLSNGEFVRGNELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGREN--KIFNGIPDWVYEEEMLAT  170 (719)
T ss_dssp             EEETTTTEECCSSCCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTT--TEEESSCCHHHHHHTTCS
T ss_pred             EEECCCCccccceecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcC--CeEcccccceeeeecccC
Confidence            99999987632122345567799999999999885 789999999876543322111100  000000000000000011


Q ss_pred             EEEEEECCCCCEEEEecCCC----------------------------------cEEEEeCCCCEEE---E-----Eeec
Q 022716          173 CYCIAIDPMGRYFAVGSADS----------------------------------LVSLWDISEMLCV---R-----TFTK  210 (293)
Q Consensus       173 ~~~~~~~~~~~~l~~gs~d~----------------------------------~i~iwd~~~~~~~---~-----~~~~  210 (293)
                      ..+++|+|||+.|++++.|.                                  .|++||+.++...   .     .+.+
T Consensus       171 ~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~  250 (719)
T 1z68_A          171 KYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIAS  250 (719)
T ss_dssp             SCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHT
T ss_pred             cccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCC
Confidence            13567778887777766542                                  7889999876531   1     1235


Q ss_pred             cCCCeeEEEEccCCCEEEEecC--C--CcEEEEE----cCCCCEEEEE-----ecCCCcc-----eeEECCCCCeEEEEE
Q 022716          211 LEWPVRTISFSHTGDYIASASE--D--LFIDISN----VHTGRTVHQI-----PCRAAMN-----SVEWNPKYNLLAYAG  272 (293)
Q Consensus       211 ~~~~v~~l~~sp~~~~l~s~s~--d--~~i~iw~----~~~~~~~~~~-----~~~~~i~-----~~~~sp~~~~la~~~  272 (293)
                      +...+..++||||++++++...  +  ..|.+||    ..+++....+     .+...+.     .+.|+|+|+.|+...
T Consensus       251 ~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~  330 (719)
T 1z68_A          251 SDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIF  330 (719)
T ss_dssp             SCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEE
T ss_pred             CcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEE
Confidence            6678999999999988777442  2  3488899    7666543222     2344566     889999999777643

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.84  E-value=7.4e-18  Score=142.04  Aligned_cols=218  Identities=12%  Similarity=0.175  Sum_probs=146.9

Q ss_pred             cCccccEEEEEECCCCCeEEEEe-CCCcEEEeecCCCCCCce-eEEEeeC-------CcCCeeEEEEcCCCCCEEEEEeC
Q 022716           17 TGHKKKVHSVAWNCTGTKLASGS-VDQTARVWHIEPHGHGKV-KDIELRG-------HADSVDQLCWDPKHADLIATASG   87 (293)
Q Consensus        17 ~~h~~~v~~l~~s~~~~~l~s~~-~dg~v~iw~~~~~~~~~~-~~~~~~~-------h~~~i~~~~~~~~~~~~l~s~~~   87 (293)
                      ..|...+..++|+|+|++|++++ .++.|++|++........ ......+       +...+..++|+|++. ++++...
T Consensus        82 ~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~  160 (347)
T 3hfq_A           82 VAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLG  160 (347)
T ss_dssp             EEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETT
T ss_pred             ecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCC
Confidence            34667889999999999998888 689999999964322111 1111111       123478899999876 8877778


Q ss_pred             CCeEEEEeCC-CCeeeee--eee--cCceEEEEEcCCCCEEEEE-eCCCeEEEEEccc--cceeeeecccceeeeeEEec
Q 022716           88 DKTVRLWDAR-SGKCSQQ--AEL--SGENINITYKPDGTHIAVG-NRDDELTILDVRK--FKPIHRRKFGYEVNEIAWNM  159 (293)
Q Consensus        88 d~~i~vwd~~-~~~~~~~--~~~--~~~~~~~~~~~~~~~l~~~-~~d~~i~l~d~~~--~~~~~~~~~~~~~~~v~~~~  159 (293)
                      ++.|.+|++. +++....  ...  ...+..++|+|||+++++. ..++.+.+|++..  .......       .+...+
T Consensus       161 ~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~-------~~~~~~  233 (347)
T 3hfq_A          161 SDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLG-------IVKTIP  233 (347)
T ss_dssp             TTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEE-------EEESSC
T ss_pred             CCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEee-------eeeecC
Confidence            9999999998 4543322  121  2256679999999976664 5688999999874  2211100       000000


Q ss_pred             CCCEEEEecCCCCEEEEEECCCCCEE-EEecCCCcEEEEeCC---CCEEEEEeeccCCCeeEEEEccCCCEEEEecC-CC
Q 022716          160 TGEMFFLTTGNAGCYCIAIDPMGRYF-AVGSADSLVSLWDIS---EMLCVRTFTKLEWPVRTISFSHTGDYIASASE-DL  234 (293)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~l-~~gs~d~~i~iwd~~---~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~-d~  234 (293)
                      .+     ......+..++|+|++++| ++...++.|.+|++.   ....+..+..+...+..++|+|+|++|++++. ++
T Consensus       234 ~~-----~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~  308 (347)
T 3hfq_A          234 AD-----YTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTD  308 (347)
T ss_dssp             TT-----CCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTT
T ss_pred             CC-----CCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCC
Confidence            00     0011346789999999977 566678999999987   33555566665667899999999998887765 58


Q ss_pred             cEEEE--EcCCCCEE
Q 022716          235 FIDIS--NVHTGRTV  247 (293)
Q Consensus       235 ~i~iw--~~~~~~~~  247 (293)
                      .+.+|  |..+++..
T Consensus       309 ~v~v~~~d~~tg~l~  323 (347)
T 3hfq_A          309 NATLYARDLTSGKLS  323 (347)
T ss_dssp             EEEEEEECTTTCCEE
T ss_pred             cEEEEEEeCCCCeEE
Confidence            89999  55566654

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.84  E-value=2.5e-18  Score=144.48  Aligned_cols=222  Identities=9%  Similarity=0.026  Sum_probs=153.0

Q ss_pred             cEEEEEECCCCCeEE-EEeCCCcEEEeecCCCCCCceeEEEeeCC-----cCCeeEEEEcCCCCCEEEEEeCC-------
Q 022716           22 KVHSVAWNCTGTKLA-SGSVDQTARVWHIEPHGHGKVKDIELRGH-----ADSVDQLCWDPKHADLIATASGD-------   88 (293)
Q Consensus        22 ~v~~l~~s~~~~~l~-s~~~dg~v~iw~~~~~~~~~~~~~~~~~h-----~~~i~~~~~~~~~~~~l~s~~~d-------   88 (293)
                      .+..++|+|+|+.++ ++..++.|.+||+....  ....+.. .+     ...+..++|+|++ +.+++++.+       
T Consensus        44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~--~~~~~~~-~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~  119 (349)
T 1jmx_B           44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCK--NTFHANL-SSVPGEVGRSMYSFAISPDG-KEVYATVNPTQRLNDH  119 (349)
T ss_dssp             SSCEEEECTTSSEEEEEETTTTEEEEEETTTTE--EEEEEES-CCSTTEEEECSSCEEECTTS-SEEEEEEEEEEECSSC
T ss_pred             CCceeEECCCCCEEEEEeCCCCcEEEEeCCCCc--EEEEEEc-ccccccccccccceEECCCC-CEEEEEcccccccccc
Confidence            578999999998664 55678999999987431  1112222 22     2236788999975 566666654       


Q ss_pred             -----CeEEEEeCCCCeee---eeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccc----------
Q 022716           89 -----KTVRLWDARSGKCS---QQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGY----------  150 (293)
Q Consensus        89 -----~~i~vwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~----------  150 (293)
                           +.|.+||+.+++..   ........+.+++|+|+|+ +++++  +.+.+||+++.+.......+.          
T Consensus       120 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~  196 (349)
T 1jmx_B          120 YVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPD  196 (349)
T ss_dssp             EEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCB
T ss_pred             cccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCcc
Confidence                 89999999875432   2333444567788999999 66654  349999998877655443321          


Q ss_pred             ---------------eeeeeEEecCC---------------------C--EEEEecCCCCEEEEEECC-CCCEEEEecCC
Q 022716          151 ---------------EVNEIAWNMTG---------------------E--MFFLTTGNAGCYCIAIDP-MGRYFAVGSAD  191 (293)
Q Consensus       151 ---------------~~~~v~~~~~~---------------------~--~~~~~~~~~~~~~~~~~~-~~~~l~~gs~d  191 (293)
                                     ....+.+.+++                     .  .+........+..++++| ++++++++  +
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~  274 (349)
T 1jmx_B          197 VLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--L  274 (349)
T ss_dssp             CCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--E
T ss_pred             ceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--c
Confidence                           11222222211                     0  000111223567889999 99999888  8


Q ss_pred             CcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEecC
Q 022716          192 SLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCR  253 (293)
Q Consensus       192 ~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~  253 (293)
                      +.|.+||+++++.+..+.. ...+..++|+|+|++|++++.++.|.+||..+++.+..++..
T Consensus       275 ~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~  335 (349)
T 1jmx_B          275 NRLAKYDLKQRKLIKAANL-DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP  335 (349)
T ss_dssp             SEEEEEETTTTEEEEEEEC-SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred             CeEEEEECccCeEEEEEcC-CCCccceEECCCCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence            8999999999987776653 345789999999999988888999999999999888877644

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.82  E-value=9e-17  Score=131.74  Aligned_cols=241  Identities=11%  Similarity=0.129  Sum_probs=168.6

Q ss_pred             CccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEe----eCCcCCeeEEEEcCCCCCEEEEEeC-CCeEE
Q 022716           18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIEL----RGHADSVDQLCWDPKHADLIATASG-DKTVR   92 (293)
Q Consensus        18 ~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~----~~h~~~i~~~~~~~~~~~~l~s~~~-d~~i~   92 (293)
                      +|-..+.+++++++|+.+++...++.|++||.+..   .......    .+|...+..+++.+.++.++++... ++.|.
T Consensus        27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~---~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~  103 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGR---FKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQ  103 (286)
T ss_dssp             TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSC---EEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEE
T ss_pred             CccCCCceEEECCCCCEEEEECCCCEEEEECCCCc---EEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEE
Confidence            45568999999999998888888999999997521   1111111    1344567888884334456665533 89999


Q ss_pred             EEeCCCCeeeeeeee--cCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCC
Q 022716           93 LWDARSGKCSQQAEL--SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGN  170 (293)
Q Consensus        93 vwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  170 (293)
                      +|| .+++....+..  ...+..+++.|+|+.+++...++.|.+||... +.......                  ....
T Consensus       104 ~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~~~~~~~~------------------~~~~  163 (286)
T 1q7f_A          104 IYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-NVLHKFGC------------------SKHL  163 (286)
T ss_dssp             EEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-CEEEEEEC------------------TTTC
T ss_pred             EEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCC-CEEEEeCC------------------CCcc
Confidence            999 45555544432  23567899999999888777789999999643 21111100                  0122


Q ss_pred             CCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeecc--CCCeeEEEEccCCCEEEEecCCC-cEEEEEcCCCCEE
Q 022716          171 AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL--EWPVRTISFSHTGDYIASASEDL-FIDISNVHTGRTV  247 (293)
Q Consensus       171 ~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~--~~~v~~l~~sp~~~~l~s~s~d~-~i~iw~~~~~~~~  247 (293)
                      ..+..++++|+++++++...++.|.+||.. +..+..+...  ...+..++++|+|+++++...++ .|.+|+. +++.+
T Consensus       164 ~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~  241 (286)
T 1q7f_A          164 EFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLI  241 (286)
T ss_dssp             SSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEE
T ss_pred             CCcEEEEECCCCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEE
Confidence            346789999999988888889999999974 4445555433  25789999999999998888886 9999995 56666


Q ss_pred             EEEecCC---CcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeeec
Q 022716          248 HQIPCRA---AMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN  292 (293)
Q Consensus       248 ~~~~~~~---~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~~  292 (293)
                      ..+....   .+..++++|+++++++ +.|        +.++||++..
T Consensus       242 ~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~--------~~v~v~~~~~  280 (286)
T 1q7f_A          242 SALESKVKHAQCFDVALMDDGSVVLA-SKD--------YRLYIYRYVQ  280 (286)
T ss_dssp             EEEEESSCCSCEEEEEEETTTEEEEE-ETT--------TEEEEEECSC
T ss_pred             EEEcccCCCCcceeEEECCCCcEEEE-CCC--------CeEEEEEccc
Confidence            6664332   3568999999987776 444        4678887643

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.80  E-value=8.1e-18  Score=155.88  Aligned_cols=241  Identities=10%  Similarity=0.126  Sum_probs=156.1

Q ss_pred             ccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCC-----eeEEEEcCCCCCEEEEEeCC-------
Q 022716           21 KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADS-----VDQLCWDPKHADLIATASGD-------   88 (293)
Q Consensus        21 ~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~-----i~~~~~~~~~~~~l~s~~~d-------   88 (293)
                      ....+++|+|||.+++++  ||+|++||+....   . ...+.+|...     ...+.|+|++ +.|+.++.+       
T Consensus        17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~Spdg-~~l~~~~~~~~~~r~~   89 (740)
T 4a5s_A           17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGN---S-SVFLENSTFDEFGHSINDYSISPDG-QFILLEYNYVKQWRHS   89 (740)
T ss_dssp             CCCCCEEECSSSEEEEEE--TTEEEEEETTTCC---E-EEEECTTTTTTCCSCCCEEEECTTS-SEEEEEEEEEECSSSC
T ss_pred             ccccccEECCCCcEEEEc--CCcEEEEECCCCc---e-EEEEechhhhhhcccccceEECCCC-CEEEEEECCeeeEEEc
Confidence            346689999999888886  9999999997542   1 2234555432     2347889985 566667665       


Q ss_pred             --CeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccc----------------
Q 022716           89 --KTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGY----------------  150 (293)
Q Consensus        89 --~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~----------------  150 (293)
                        +.+.+||+.++++.......+.....+|+|||+.|+.+. ++.|.+||+.+....+....+.                
T Consensus        90 ~~~~~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee  168 (740)
T 4a5s_A           90 YTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEE  168 (740)
T ss_dssp             EEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHH
T ss_pred             cceEEEEEECCCCcEEEcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccch
Confidence              556799999998765444456678899999999998884 7899999987765443222111                


Q ss_pred             ---eeeeeEEecCCCEEEEecCCC---CEE----------------EEEECCCCCEEEEecCCCcEEEEeCCC---C---
Q 022716          151 ---EVNEIAWNMTGEMFFLTTGNA---GCY----------------CIAIDPMGRYFAVGSADSLVSLWDISE---M---  202 (293)
Q Consensus       151 ---~~~~v~~~~~~~~~~~~~~~~---~~~----------------~~~~~~~~~~l~~gs~d~~i~iwd~~~---~---  202 (293)
                         ....+.|+|+|..+.....+.   ...                .+.+.+.|..    ..+.+|++||+.+   +   
T Consensus       169 ~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~----~~~~~l~v~d~~~~~~~~~~  244 (740)
T 4a5s_A          169 VFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAV----NPTVKFFVVNTDSLSSVTNA  244 (740)
T ss_dssp             TSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSC----CCEEEEEEEETTSCCSSSCC
T ss_pred             hcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCc----CCeeEEEEEECCCCCCCCcc
Confidence               112366777777655443111   111                1222222211    1122688899988   6   


Q ss_pred             EEEEEee------ccCCCeeEEEEccCCCEEEEec----CCCcEEEEEcCCCC----E--EEE---EecCCCcc-----e
Q 022716          203 LCVRTFT------KLEWPVRTISFSHTGDYIASAS----EDLFIDISNVHTGR----T--VHQ---IPCRAAMN-----S  258 (293)
Q Consensus       203 ~~~~~~~------~~~~~v~~l~~sp~~~~l~s~s----~d~~i~iw~~~~~~----~--~~~---~~~~~~i~-----~  258 (293)
                      ... .+.      ++...+..++|+|||+.++...    .+..|.+||..+++    .  +..   -.+...+.     .
T Consensus       245 ~~~-~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~  323 (740)
T 4a5s_A          245 TSI-QITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSE  323 (740)
T ss_dssp             CEE-EECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCC
T ss_pred             eEE-EecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCC
Confidence            333 333      2666799999999999766542    34579999999887    1  111   22333344     7


Q ss_pred             eEECCCCCeEE-EEEcC
Q 022716          259 VEWNPKYNLLA-YAGDD  274 (293)
Q Consensus       259 ~~~sp~~~~la-~~~~d  274 (293)
                      ..|+|||+.|+ ..+.+
T Consensus       324 p~fspDG~~l~~~~s~~  340 (740)
T 4a5s_A          324 PHFTLDGNSFYKIISNE  340 (740)
T ss_dssp             CEECTTSSEEEEEEECT
T ss_pred             ceEcCCCCEEEEEEEcC
Confidence            89999999888 66643

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.80  E-value=1.9e-16  Score=132.71  Aligned_cols=248  Identities=11%  Similarity=0.036  Sum_probs=168.1

Q ss_pred             cccEEEEEECCCCCeEEEEeCC------------------------CcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEc
Q 022716           20 KKKVHSVAWNCTGTKLASGSVD------------------------QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWD   75 (293)
Q Consensus        20 ~~~v~~l~~s~~~~~l~s~~~d------------------------g~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~   75 (293)
                      -+.+.+++++|+|+.+++.+.+                        +.|.+||.+..   ........++......+++.
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g---~~~~~~~~~~~~~p~gia~d   99 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNA---EILQSSGKNLFYLPHGLSID   99 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTC---CEEEEECTTTCSSEEEEEEC
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCC---eEEeccCCCccCCceEEEEC
Confidence            3689999999999999888877                        47899987542   22221122445568899999


Q ss_pred             CCCCCEEEEEeCCCeEEEEeCCCCe-eeeeeee----------cCceEEEEEcC-CCCEEEEEe-CCCeEEEEEccccce
Q 022716           76 PKHADLIATASGDKTVRLWDARSGK-CSQQAEL----------SGENINITYKP-DGTHIAVGN-RDDELTILDVRKFKP  142 (293)
Q Consensus        76 ~~~~~~l~s~~~d~~i~vwd~~~~~-~~~~~~~----------~~~~~~~~~~~-~~~~l~~~~-~d~~i~l~d~~~~~~  142 (293)
                      |++ .++++...++.|++||..... .+..+..          -..+..++++| ++..+++.+ .++.|.+||... ..
T Consensus       100 ~~g-~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g-~~  177 (329)
T 3fvz_A          100 TDG-NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSG-KF  177 (329)
T ss_dssp             TTS-CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTS-CE
T ss_pred             CCC-CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCC-CE
Confidence            875 588888889999999986542 2222211          12467899999 788888876 689999999433 32


Q ss_pred             eeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCC-CCEEEEecCCCcEEEEeCCCCEEEEEee--ccCCCeeEEE
Q 022716          143 IHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPM-GRYFAVGSADSLVSLWDISEMLCVRTFT--KLEWPVRTIS  219 (293)
Q Consensus       143 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~gs~d~~i~iwd~~~~~~~~~~~--~~~~~v~~l~  219 (293)
                      ........         .+.. .....-.....++++|+ +.++++...++.|++||..+++.+..+.  .+...+.+++
T Consensus       178 ~~~~~~~g---------~~~~-~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~  247 (329)
T 3fvz_A          178 VTQWGEES---------SGSS-PRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAIS  247 (329)
T ss_dssp             EEEECEEC---------CSSS-CCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEE
T ss_pred             EEEeccCC---------CCCC-CCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceee
Confidence            22211000         0000 00000023568999998 7888888889999999998887777764  3456788999


Q ss_pred             EccCCCEEEEe-------cCCCcEEEEEcCCCCEEEEEe----cCCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEE
Q 022716          220 FSHTGDYIASA-------SEDLFIDISNVHTGRTVHQIP----CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIY  288 (293)
Q Consensus       220 ~sp~~~~l~s~-------s~d~~i~iw~~~~~~~~~~~~----~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~  288 (293)
                      |+| +..+++.       ..+..|++|+..+++.+..+.    .-.....|+++|+|+++++...++        .+++|
T Consensus       248 ~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~--------~I~~~  318 (329)
T 3fvz_A          248 YIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTN--------TVWKF  318 (329)
T ss_dssp             EET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSC--------CEEEE
T ss_pred             ecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCC--------EEEEE
Confidence            999 4434333       445589999999999888774    233477899999997777766553        45556


Q ss_pred             eee
Q 022716          289 GFE  291 (293)
Q Consensus       289 ~~~  291 (293)
                      +++
T Consensus       319 ~~~  321 (329)
T 3fvz_A          319 TLT  321 (329)
T ss_dssp             EEE
T ss_pred             eCC
Confidence            554

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.80  E-value=1.7e-17  Score=141.84  Aligned_cols=243  Identities=10%  Similarity=0.020  Sum_probs=156.5

Q ss_pred             EEEEEECCCCCeEEEEeCC-C--cEEEeecCCCCCCceeEEEeeCCcCC-eeEEEEcCCCCCEEEEEeCCCeEEEEeCCC
Q 022716           23 VHSVAWNCTGTKLASGSVD-Q--TARVWHIEPHGHGKVKDIELRGHADS-VDQLCWDPKHADLIATASGDKTVRLWDARS   98 (293)
Q Consensus        23 v~~l~~s~~~~~l~s~~~d-g--~v~iw~~~~~~~~~~~~~~~~~h~~~-i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~   98 (293)
                      +.+++|||||++|+....+ +  .|.+|++...   ..  ..+..+... ...+.|+|++ +.|+.++.++.+.+||+.+
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~---~~--~~l~~~~~~~~~~~~~spdg-~~l~~~~~~~~l~~~d~~~  111 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQ---QA--VQLTEGKGDNTFGGFISTDE-RAFFYVKNELNLMKVDLET  111 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTT---EE--EECCCSSCBCTTTCEECTTS-SEEEEEETTTEEEEEETTT
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCCC---cE--EEeecCCCCccccceECCCC-CEEEEEEcCCcEEEEECCC
Confidence            7788999999998877543 3  6777777542   21  223333333 3336789975 5777888888999999988


Q ss_pred             CeeeeeeeecCceE-E-------------------EEEcCCCCEEEEE-----eCCCeEEEEEccccceeeeecccceee
Q 022716           99 GKCSQQAELSGENI-N-------------------ITYKPDGTHIAVG-----NRDDELTILDVRKFKPIHRRKFGYEVN  153 (293)
Q Consensus        99 ~~~~~~~~~~~~~~-~-------------------~~~~~~~~~l~~~-----~~d~~i~l~d~~~~~~~~~~~~~~~~~  153 (293)
                      ++.......+.... .                   +.++|+++.++..     ..+..+.+||+.+.+..........+.
T Consensus       112 ~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~  191 (396)
T 3c5m_A          112 LEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLG  191 (396)
T ss_dssp             CCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEE
T ss_pred             CCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccc
Confidence            87654444322211 1                   2456777766554     356689999998766544443444566


Q ss_pred             eeEEec-CCCEEEEecC----------------------------CCCEEEEEECCCCCEEEEecCC-----CcEEEEeC
Q 022716          154 EIAWNM-TGEMFFLTTG----------------------------NAGCYCIAIDPMGRYFAVGSAD-----SLVSLWDI  199 (293)
Q Consensus       154 ~v~~~~-~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~l~~gs~d-----~~i~iwd~  199 (293)
                      .+.|+| ++..+.+...                            ...+..++|+|+++.|+.++.+     +.|.+||+
T Consensus       192 ~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~  271 (396)
T 3c5m_A          192 HPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANP  271 (396)
T ss_dssp             EEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECT
T ss_pred             cceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEEC
Confidence            677777 4443322111                            0124567999999987776544     44999999


Q ss_pred             CCCEEEEEeeccCCCeeEEEEcc-CCCEEEEec----------------CCCcEEEEEcCCCCEEEEEecCC--------
Q 022716          200 SEMLCVRTFTKLEWPVRTISFSH-TGDYIASAS----------------EDLFIDISNVHTGRTVHQIPCRA--------  254 (293)
Q Consensus       200 ~~~~~~~~~~~~~~~v~~l~~sp-~~~~l~s~s----------------~d~~i~iw~~~~~~~~~~~~~~~--------  254 (293)
                      .++.... +.... ... +.|+| +|+++++++                .+..|++||..+++.........        
T Consensus       272 ~~g~~~~-l~~~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~  348 (396)
T 3c5m_A          272 ETLENEE-VMVMP-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGD  348 (396)
T ss_dssp             TTCCEEE-EEECC-SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTB
T ss_pred             CCCCeEE-eeeCC-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCCcccccccc
Confidence            8775433 22222 233 88999 999888764                34779999998876433222222        


Q ss_pred             ---CcceeEECCCCCeEEEEEcC
Q 022716          255 ---AMNSVEWNPKYNLLAYAGDD  274 (293)
Q Consensus       255 ---~i~~~~~sp~~~~la~~~~d  274 (293)
                         .+..+.|+|+++.|++++.+
T Consensus       349 ~~~~~~~~~~s~dg~~l~~~s~~  371 (396)
T 3c5m_A          349 RQITHPHPSFTPNDDGVLFTSDF  371 (396)
T ss_dssp             SSTTCCCCEECTTSSEEEEEECT
T ss_pred             ccCCCCCceEccCCCeEEEEecC
Confidence               25678999999999998864

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.79  E-value=3.5e-16  Score=132.54  Aligned_cols=226  Identities=14%  Similarity=0.149  Sum_probs=145.9

Q ss_pred             ccccEEEEEECCCCCeEEEEe-CCCcEEEeecCCCCCCc-ee-EEEeeC--------CcCCeeEEEEcCCCCCEEEEEeC
Q 022716           19 HKKKVHSVAWNCTGTKLASGS-VDQTARVWHIEPHGHGK-VK-DIELRG--------HADSVDQLCWDPKHADLIATASG   87 (293)
Q Consensus        19 h~~~v~~l~~s~~~~~l~s~~-~dg~v~iw~~~~~~~~~-~~-~~~~~~--------h~~~i~~~~~~~~~~~~l~s~~~   87 (293)
                      +......+++  ++++|++++ .++.|.+|++....... .. .....+        +...+..++|+|++..++++...
T Consensus        98 ~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~  175 (361)
T 3scy_A           98 MGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLG  175 (361)
T ss_dssp             SSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETT
T ss_pred             CCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCC
Confidence            4556778888  888887776 58999999997532211 11 111111        12345789999986546666666


Q ss_pred             CCeEEEEeCCCCee------e------e--eeeecCceEEEEEcCCCCEEEEEe-CCCeEEEEEccccceeeeeccccee
Q 022716           88 DKTVRLWDARSGKC------S------Q--QAELSGENINITYKPDGTHIAVGN-RDDELTILDVRKFKPIHRRKFGYEV  152 (293)
Q Consensus        88 d~~i~vwd~~~~~~------~------~--~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~l~d~~~~~~~~~~~~~~~~  152 (293)
                      ++.|.+|++.....      +      .  .......+..++|+|+|+++++.. .++++.+||+++........     
T Consensus       176 ~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~-----  250 (361)
T 3scy_A          176 TDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQT-----  250 (361)
T ss_dssp             TTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEE-----
T ss_pred             CCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEE-----
Confidence            89999998865431      1      1  112234567899999999888777 58999999987543211110     


Q ss_pred             eeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecC--CCcEEEEeCC--CCE--EEEEeeccCCCeeEEEEccCCCE
Q 022716          153 NEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSA--DSLVSLWDIS--EML--CVRTFTKLEWPVRTISFSHTGDY  226 (293)
Q Consensus       153 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~--d~~i~iwd~~--~~~--~~~~~~~~~~~v~~l~~sp~~~~  226 (293)
                        +...        ..+......++|+|++++|+++..  ++.|.+|++.  ++.  .+..+.. ...+..++|+|+|++
T Consensus       251 --~~~~--------~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~  319 (361)
T 3scy_A          251 --VAAD--------TVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKY  319 (361)
T ss_dssp             --EESC--------SSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCE
T ss_pred             --EecC--------CCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCE
Confidence              0000        011233568999999998866655  4899999985  333  3444444 557889999999998


Q ss_pred             EEEec-CCCcEEEEE--cCCCCEEEEE--ecCCCcceeEEC
Q 022716          227 IASAS-EDLFIDISN--VHTGRTVHQI--PCRAAMNSVEWN  262 (293)
Q Consensus       227 l~s~s-~d~~i~iw~--~~~~~~~~~~--~~~~~i~~~~~s  262 (293)
                      |++++ .++.|.+|.  ..+++.....  .....+.+|.|.
T Consensus       320 l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~  360 (361)
T 3scy_A          320 LLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV  360 (361)
T ss_dssp             EEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred             EEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence            88877 678899964  4566654322  122357788875

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.78  E-value=2.6e-17  Score=150.52  Aligned_cols=241  Identities=9%  Similarity=-0.023  Sum_probs=160.0

Q ss_pred             cceeecCccccEEEEEECCCCCeEEEE--eCCCcEEEeecCCCCCCceeEEEeeCCcCCee---------EEEEc--CCC
Q 022716           12 HSREYTGHKKKVHSVAWNCTGTKLASG--SVDQTARVWHIEPHGHGKVKDIELRGHADSVD---------QLCWD--PKH   78 (293)
Q Consensus        12 ~~~~~~~h~~~v~~l~~s~~~~~l~s~--~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~---------~~~~~--~~~   78 (293)
                      ..+.+.+|...+..++|+++.-.+++.  +.++..+||.....  +.  ...+..|...+.         ...|+  |++
T Consensus        15 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~--~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg   90 (662)
T 3azo_A           15 DAALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRAD--GA--EESALPAPWNVRNRVFEYSGFPWAGVPRPAG   90 (662)
T ss_dssp             CHHHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTT--SC--EEESSCTTCCBCCCGGGTCCCCEEEECCSSS
T ss_pred             CHHHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCC--CC--cceeCCCCccccccccccCCccceeeeecCC
Confidence            345577899999999999876666766  55889999986432  12  224455554544         45554  887


Q ss_pred             CC-EEEEEeCCCeEEEEeCC--C-Ceeeeeee-----ecCceEEEEEcCCCCEEEEEeCC----------CeEEEEEccc
Q 022716           79 AD-LIATASGDKTVRLWDAR--S-GKCSQQAE-----LSGENINITYKPDGTHIAVGNRD----------DELTILDVRK  139 (293)
Q Consensus        79 ~~-~l~s~~~d~~i~vwd~~--~-~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~d----------~~i~l~d~~~  139 (293)
                      .. ++++...+..|.++++.  . +.......     .......++|+|||+.|+.++.+          ..|.+||+.+
T Consensus        91 ~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~  170 (662)
T 3azo_A           91 GPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDG  170 (662)
T ss_dssp             SCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTS
T ss_pred             CeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCC
Confidence            65 45444446777777776  3 44322222     12345678999999999998876          5788999876


Q ss_pred             ------cceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCC--------CcEEEEeCC-CC--
Q 022716          140 ------FKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSAD--------SLVSLWDIS-EM--  202 (293)
Q Consensus       140 ------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d--------~~i~iwd~~-~~--  202 (293)
                            ........                    .+...+..++|+|||++|+.++.+        ..|.+||+. ++  
T Consensus       171 ~~~~~~~~~~~l~~--------------------~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~  230 (662)
T 3azo_A          171 SAAADRSAVRELSD--------------------DAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRF  230 (662)
T ss_dssp             TTTTCGGGSEESSC--------------------SCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCE
T ss_pred             CccccCCceeEEEe--------------------cCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcc
Confidence                  33221110                    112233457789999998877754        379999998 56  


Q ss_pred             -EEEEEeeccCCCeeEEEEccCCCEEEEecCCC--cEEEEEcCCCCEEEEEecCCC---------cceeEECCCCCeEEE
Q 022716          203 -LCVRTFTKLEWPVRTISFSHTGDYIASASEDL--FIDISNVHTGRTVHQIPCRAA---------MNSVEWNPKYNLLAY  270 (293)
Q Consensus       203 -~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~--~i~iw~~~~~~~~~~~~~~~~---------i~~~~~sp~~~~la~  270 (293)
                       ........+...+..++|+|||+++++++.|+  .|++|+..+++..........         +..++|+|++.++++
T Consensus       231 ~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~  310 (662)
T 3azo_A          231 ADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVV  310 (662)
T ss_dssp             EEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEE
T ss_pred             cccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEE
Confidence             43333344567899999999999888888888  566667666664433332221         467899999998888


Q ss_pred             EEcCCCC
Q 022716          271 AGDDKNK  277 (293)
Q Consensus       271 ~~~d~~~  277 (293)
                      ++. +..
T Consensus       311 ~~~-~~~  316 (662)
T 3azo_A          311 HGK-GAA  316 (662)
T ss_dssp             EBS-SSC
T ss_pred             EEc-Ccc
Confidence            875 433

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.78  E-value=3e-18  Score=158.23  Aligned_cols=231  Identities=14%  Similarity=0.098  Sum_probs=146.9

Q ss_pred             EEEEEECCCCCeEEEEeC---------CCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEE
Q 022716           23 VHSVAWNCTGTKLASGSV---------DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL   93 (293)
Q Consensus        23 v~~l~~s~~~~~l~s~~~---------dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~v   93 (293)
                      |.+++|||||++|++++.         |+.|++||++........  .+   ...+..++|+|++. .|+.+. ++.|++
T Consensus        62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~--~l---~~~~~~~~~SPDG~-~la~~~-~~~i~~  134 (719)
T 1z68_A           62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGN--EL---PRPIQYLCWSPVGS-KLAYVY-QNNIYL  134 (719)
T ss_dssp             CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSS--CC---CSSBCCEEECSSTT-CEEEEE-TTEEEE
T ss_pred             eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccce--ec---CcccccceECCCCC-EEEEEE-CCeEEE
Confidence            899999999999998876         799999999753210001  11   24588899999865 555554 789999


Q ss_pred             EeCCCCeeeeeeeec-------------------CceEEEEEcCCCCEEEEEeCCC------------------------
Q 022716           94 WDARSGKCSQQAELS-------------------GENINITYKPDGTHIAVGNRDD------------------------  130 (293)
Q Consensus        94 wd~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~l~~~~~d~------------------------  130 (293)
                      ||+.+++........                   +....++|+|||+.|+.++.|.                        
T Consensus       135 ~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~y  214 (719)
T 1z68_A          135 KQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPY  214 (719)
T ss_dssp             ESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEEC
T ss_pred             EeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecC
Confidence            999887654322111                   1114799999999999988652                        


Q ss_pred             ----------eEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCC----CcEEE
Q 022716          131 ----------ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSAD----SLVSL  196 (293)
Q Consensus       131 ----------~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d----~~i~i  196 (293)
                                ++.+||+.+............            ..+..+...+..++|+|+++++++....    ..|.+
T Consensus       215 p~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~  282 (719)
T 1z68_A          215 PKAGAKNPVVRIFIIDTTYPAYVGPQEVPVP------------AMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSI  282 (719)
T ss_dssp             CBTTSCCCEEEEEEEESSCHHHHCCEECCCC------------HHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEE
T ss_pred             CCCCCCCCeeEEEEEECCCCCccceeEccCC------------ccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEE
Confidence                      455555544332100000000            0001233456788999998877774432    24888


Q ss_pred             Ee----CCCCEEEEEe----eccCCCee-----EEEEccCCCEEEE--ecCCC--cEEEEEcCCCCEEEEEec-CCCcce
Q 022716          197 WD----ISEMLCVRTF----TKLEWPVR-----TISFSHTGDYIAS--ASEDL--FIDISNVHTGRTVHQIPC-RAAMNS  258 (293)
Q Consensus       197 wd----~~~~~~~~~~----~~~~~~v~-----~l~~sp~~~~l~s--~s~d~--~i~iw~~~~~~~~~~~~~-~~~i~~  258 (293)
                      ||    ..+++....+    ..+...+.     .+.|+|||+.++.  ...++  .|++|+..+++ ...+.. ...+..
T Consensus       283 ~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~  361 (719)
T 1z68_A          283 CDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAIN  361 (719)
T ss_dssp             EEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEE
T ss_pred             EcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEEE
Confidence            99    7776654444    35666666     8899999996544  44555  46777776666 333332 334667


Q ss_pred             eEECCCCCeEEEEEcC
Q 022716          259 VEWNPKYNLLAYAGDD  274 (293)
Q Consensus       259 ~~~sp~~~~la~~~~d  274 (293)
                      +.++ +++.|++.+.+
T Consensus       362 ~~~~-d~~~i~~~~~~  376 (719)
T 1z68_A          362 IFRV-TQDSLFYSSNE  376 (719)
T ss_dssp             EEEE-CSSEEEEEESC
T ss_pred             EEEE-eCCEEEEEEec
Confidence            7766 88888777754

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.78  E-value=6.6e-16  Score=131.09  Aligned_cols=243  Identities=10%  Similarity=0.127  Sum_probs=155.8

Q ss_pred             eecCccccEEEEEECCCCCeEEEEe----------CCCcEEEeecCCCCCCceeEEEeeC----CcCCeeEEEEcCCCCC
Q 022716           15 EYTGHKKKVHSVAWNCTGTKLASGS----------VDQTARVWHIEPHGHGKVKDIELRG----HADSVDQLCWDPKHAD   80 (293)
Q Consensus        15 ~~~~h~~~v~~l~~s~~~~~l~s~~----------~dg~v~iw~~~~~~~~~~~~~~~~~----h~~~i~~~~~~~~~~~   80 (293)
                      .+..+..+  .++|+|||++|.++.          .++.|.+||....  .....+.+..    +......++++|++ +
T Consensus        46 ~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~--~~~~~i~~~~~~~~~g~~p~~i~~spdg-~  120 (361)
T 2oiz_A           46 MVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL--TFEKEISLPPKRVQGLNYDGLFRQTTDG-K  120 (361)
T ss_dssp             EEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC--CEEEEEEECTTBCCBCCCGGGEEECTTS-S
T ss_pred             EecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC--cEEEEEEcCccccccCCCcceEEECCCC-C
Confidence            34444444  899999999998876          3678999998643  2222233221    12345678899985 4


Q ss_pred             EEEEEeC--CCeEEEEeCCCCeeeee-eeecCceEEEEEcCCC-CEEEEEeCCCeEEEEEccc-cceeeee------ccc
Q 022716           81 LIATASG--DKTVRLWDARSGKCSQQ-AELSGENINITYKPDG-THIAVGNRDDELTILDVRK-FKPIHRR------KFG  149 (293)
Q Consensus        81 ~l~s~~~--d~~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~l~d~~~-~~~~~~~------~~~  149 (293)
                      +|+.+..  ++.|.+||+.+++.... +...+. ..+.+.|++ ..+++.+.|+++.++++.. .+.....      ..+
T Consensus       121 ~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~-~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~  199 (361)
T 2oiz_A          121 FIVLQNASPATSIGIVDVAKGDYVEDVTAAAGC-WSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVK  199 (361)
T ss_dssp             EEEEEEESSSEEEEEEETTTTEEEEEEGGGTTE-EEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTT
T ss_pred             EEEEECCCCCCeEEEEECCCCcEEEEEecCCCc-ceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCC
Confidence            5665553  68999999999877665 443332 234566765 5677777888888888754 2221000      000


Q ss_pred             cee---------eeeEE-ecCCCEEEEecCC-----------------------CCEEEEEECCCCCEEEEecC------
Q 022716          150 YEV---------NEIAW-NMTGEMFFLTTGN-----------------------AGCYCIAIDPMGRYFAVGSA------  190 (293)
Q Consensus       150 ~~~---------~~v~~-~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~l~~gs~------  190 (293)
                      ...         ..+.+ +..+....+....                       ....-++++|+++.+.++..      
T Consensus       200 ~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~  279 (361)
T 2oiz_A          200 DDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEG  279 (361)
T ss_dssp             TSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTT
T ss_pred             CCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcc
Confidence            000         00000 0111111111000                       00112678899777665432      


Q ss_pred             -----CCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCC--CEEEEE-ecCCCcceeEEC
Q 022716          191 -----DSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTG--RTVHQI-PCRAAMNSVEWN  262 (293)
Q Consensus       191 -----d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~--~~~~~~-~~~~~i~~~~~s  262 (293)
                           .+.|.+||+++++.+.++..+.  +.+++|+|+|++|++++. +.|.+||..++  +.+..+ ......+.++++
T Consensus       280 ~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~  356 (361)
T 2oiz_A          280 THKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFH  356 (361)
T ss_dssp             CTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEEC
T ss_pred             cccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEec
Confidence                 3589999999999999887776  899999999999998887 99999999999  888876 445567889999


Q ss_pred             CCCC
Q 022716          263 PKYN  266 (293)
Q Consensus       263 p~~~  266 (293)
                      |+|.
T Consensus       357 p~G~  360 (361)
T 2oiz_A          357 PVGG  360 (361)
T ss_dssp             CCSC
T ss_pred             CCCC
Confidence            9985

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.76  E-value=6.2e-15  Score=121.45  Aligned_cols=229  Identities=12%  Similarity=0.097  Sum_probs=161.7

Q ss_pred             eeecCccccEEEEEECCCCC-eEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEE
Q 022716           14 REYTGHKKKVHSVAWNCTGT-KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (293)
Q Consensus        14 ~~~~~h~~~v~~l~~s~~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~   92 (293)
                      +.+..+.....+++|+|+|+ .++++..++.|..|+.+..    .  ..+..+...+..++++|++ .++++...++.|.
T Consensus        21 ~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~----~--~~~~~~~~~~~~l~~~~dg-~l~v~~~~~~~i~   93 (296)
T 3e5z_A           21 RRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ----L--SPEMHPSHHQNGHCLNKQG-HLIACSHGLRRLE   93 (296)
T ss_dssp             EEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC----E--EEEESSCSSEEEEEECTTC-CEEEEETTTTEEE
T ss_pred             EEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC----e--EEEECCCCCcceeeECCCC-cEEEEecCCCeEE
Confidence            44556667889999999998 6788888999999998642    2  2344566778999999864 5777766678999


Q ss_pred             EEeCCCCeeeeeeee-c----CceEEEEEcCCCCEEEEEeC-----------------CCeEEEEEccccceeeeecccc
Q 022716           93 LWDARSGKCSQQAEL-S----GENINITYKPDGTHIAVGNR-----------------DDELTILDVRKFKPIHRRKFGY  150 (293)
Q Consensus        93 vwd~~~~~~~~~~~~-~----~~~~~~~~~~~~~~l~~~~~-----------------d~~i~l~d~~~~~~~~~~~~~~  150 (293)
                      +||..+++....... .    ..+..++++|+|+.+++.+.                 .+.|..++..            
T Consensus        94 ~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~------------  161 (296)
T 3e5z_A           94 RQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD------------  161 (296)
T ss_dssp             EECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT------------
T ss_pred             EEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC------------
Confidence            999987765433221 1    12346889999998887321                 2344444432            


Q ss_pred             eeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCC-CCEE---EEEeeccCCCeeEEEEccCCCE
Q 022716          151 EVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDIS-EMLC---VRTFTKLEWPVRTISFSHTGDY  226 (293)
Q Consensus       151 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~-~~~~---~~~~~~~~~~v~~l~~sp~~~~  226 (293)
                                +....+.........++++|+++.+++.+.++.|.+|++. ++..   ...+..+...+..+++.++|++
T Consensus       162 ----------g~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l  231 (296)
T 3e5z_A          162 ----------GTLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLI  231 (296)
T ss_dssp             ----------SCEEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCE
T ss_pred             ----------CCEEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCE
Confidence                      1111222233445678999999988888888999999986 4433   2333233456778999999997


Q ss_pred             EEEecCCCcEEEEEcCCCCEEEEEecCCCcceeEE-CCCCCeEEEEEcC
Q 022716          227 IASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEW-NPKYNLLAYAGDD  274 (293)
Q Consensus       227 l~s~s~d~~i~iw~~~~~~~~~~~~~~~~i~~~~~-sp~~~~la~~~~d  274 (293)
                      .++.  ++.|.+|+.. ++.+..+.....+.+++| +|+++.|.+++.+
T Consensus       232 ~v~~--~~~v~~~~~~-g~~~~~~~~~~~~~~~~f~~~d~~~L~v~t~~  277 (296)
T 3e5z_A          232 WASA--GDGVHVLTPD-GDELGRVLTPQTTSNLCFGGPEGRTLYMTVST  277 (296)
T ss_dssp             EEEE--TTEEEEECTT-SCEEEEEECSSCCCEEEEESTTSCEEEEEETT
T ss_pred             EEEc--CCeEEEECCC-CCEEEEEECCCCceeEEEECCCCCEEEEEcCC
Confidence            7766  7889999986 777777665444899999 6899888888765

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.75  E-value=3.1e-15  Score=127.06  Aligned_cols=235  Identities=11%  Similarity=0.037  Sum_probs=146.9

Q ss_pred             EEEEeC--CCcEEEeecCCCCCCceeEEEe-e-CCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCC-CCeeeeeeee--
Q 022716           35 LASGSV--DQTARVWHIEPHGHGKVKDIEL-R-GHADSVDQLCWDPKHADLIATASGDKTVRLWDAR-SGKCSQQAEL--  107 (293)
Q Consensus        35 l~s~~~--dg~v~iw~~~~~~~~~~~~~~~-~-~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~-~~~~~~~~~~--  107 (293)
                      |+.|+.  ++.|.+|+++... +....+.. . +....+..++++|++ ++|++++.+ .|.+|++. +++.......  
T Consensus         5 ~~vg~~~~~~~i~~~~~d~~~-g~l~~~~~~~~~~~~~~~~~a~spdg-~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~   81 (365)
T 1jof_A            5 LMIGTWTPPGAIFTVQFDDEK-LTCKLIKRTEIPQDEPISWMTFDHER-KNIYGAAMK-KWSSFAVKSPTEIVHEASHPI   81 (365)
T ss_dssp             EEEEESSSSCEEEEEEEETTT-TEEEEEEEEECCTTCCCSEEEECTTS-SEEEEEEBT-EEEEEEEEETTEEEEEEEEEC
T ss_pred             EEEEEccCCCcEEEEEEECCC-CCEEEeeEEccCCCCCCcEEEECCCC-CEEEEEccc-eEEEEEECCCCCEEEeeEeec
Confidence            444544  2567777765321 22222211 1 233467789999975 577788877 99999997 7765443332  


Q ss_pred             cCceEEEEEcCCCCE--EEEEe-------------CCCeEEEEEccc-cceeeeecccceeeeeEEecCCCEEEEecCCC
Q 022716          108 SGENINITYKPDGTH--IAVGN-------------RDDELTILDVRK-FKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNA  171 (293)
Q Consensus       108 ~~~~~~~~~~~~~~~--l~~~~-------------~d~~i~l~d~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  171 (293)
                      .+.+..++++|+|++  ++++.             .++.+.+|++.. .+......      .+.          .....
T Consensus        82 ~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~------~~~----------~~~~~  145 (365)
T 1jof_A           82 GGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQ------NYE----------YQENT  145 (365)
T ss_dssp             CSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEE------EEE----------CCTTC
T ss_pred             CCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEe------eEE----------eCCCC
Confidence            244556889999995  44442             688999999863 22211100      000          01234


Q ss_pred             CEEEEEECCCCCEEEEec-CCCcEEEEeCC-CCEEE--EEee--ccCCCeeEEEEccCCCEEEEec-CCCcEEEEEcC--
Q 022716          172 GCYCIAIDPMGRYFAVGS-ADSLVSLWDIS-EMLCV--RTFT--KLEWPVRTISFSHTGDYIASAS-EDLFIDISNVH--  242 (293)
Q Consensus       172 ~~~~~~~~~~~~~l~~gs-~d~~i~iwd~~-~~~~~--~~~~--~~~~~v~~l~~sp~~~~l~s~s-~d~~i~iw~~~--  242 (293)
                      .+..++++|+|+++++++ .++.|.+||+. +++..  ..+.  .+...+..++|+|+|++|++++ .++.|.+|+..  
T Consensus       146 ~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~  225 (365)
T 1jof_A          146 GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPA  225 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             cceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCC
Confidence            577899999999887765 46899999998 56432  2333  2355789999999999987776 47889999765  


Q ss_pred             CCCEEE---EEe---cC----C-------CcceeE-ECCCCCeEEEEEcCCCCCCCCcceEEEEee
Q 022716          243 TGRTVH---QIP---CR----A-------AMNSVE-WNPKYNLLAYAGDDKNKYQADEGVFRIYGF  290 (293)
Q Consensus       243 ~~~~~~---~~~---~~----~-------~i~~~~-~sp~~~~la~~~~d~~~~~~~~~~~~~~~~  290 (293)
                      +++...   .+.   ..    .       .+..++ |+|+|++|++++.+.+-  ...+.+++|++
T Consensus       226 ~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~--~~~~~i~v~~~  289 (365)
T 1jof_A          226 THMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKF--ELQGYIAGFKL  289 (365)
T ss_dssp             TCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESST--TSCCEEEEEEE
T ss_pred             CCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCC--CCCCeEEEEEE
Confidence            565421   222   11    1       367899 99999988877654320  01135556655

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.75  E-value=2.9e-14  Score=119.31  Aligned_cols=233  Identities=10%  Similarity=0.043  Sum_probs=157.8

Q ss_pred             eecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCC----Ce
Q 022716           15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD----KT   90 (293)
Q Consensus        15 ~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d----~~   90 (293)
                      .+.++...+.+++|+++|+.++++..++.|.+||.+..   ..... ...+...+.+++++|++ .++++...+    +.
T Consensus        39 ~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~---~~~~~-~~~~~~~~~~i~~~~dg-~l~v~~~~~~~~~~~  113 (333)
T 2dg1_A           39 EISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETK---EIKRP-FVSHKANPAAIKIHKDG-RLFVCYLGDFKSTGG  113 (333)
T ss_dssp             EEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTC---CEEEE-EECSSSSEEEEEECTTS-CEEEEECTTSSSCCE
T ss_pred             EEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCC---cEEEE-eeCCCCCcceEEECCCC-cEEEEeCCCCCCCce
Confidence            45566677899999999998888888999999998642   22211 22456779999999874 677766666    68


Q ss_pred             EEEEeCCCCeeeeeee---ecCceEEEEEcCCCCEEEEEeC------CCeEEEEEccccceeeeecccceeeeeEEecCC
Q 022716           91 VRLWDARSGKCSQQAE---LSGENINITYKPDGTHIAVGNR------DDELTILDVRKFKPIHRRKFGYEVNEIAWNMTG  161 (293)
Q Consensus        91 i~vwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~------d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~  161 (293)
                      |.+||..++.......   ....+..++++|+|+.+++...      .+.+..+|..+.+....                
T Consensus       114 i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~----------------  177 (333)
T 2dg1_A          114 IFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPI----------------  177 (333)
T ss_dssp             EEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEE----------------
T ss_pred             EEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEe----------------
Confidence            9999988776542221   1234667899999987776653      24555555443221110                


Q ss_pred             CEEEEecCCCCEEEEEECCCCCEE-EEecCCCcEEEEeCCC-CEEEE--------EeeccCCCeeEEEEccCCCEEEEec
Q 022716          162 EMFFLTTGNAGCYCIAIDPMGRYF-AVGSADSLVSLWDISE-MLCVR--------TFTKLEWPVRTISFSHTGDYIASAS  231 (293)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~l-~~gs~d~~i~iwd~~~-~~~~~--------~~~~~~~~v~~l~~sp~~~~l~s~s  231 (293)
                           ......+..++++|+++.+ ++.+.++.|.+||++. +..+.        .+.++ ..+..++++++|+++++..
T Consensus       178 -----~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~  251 (333)
T 2dg1_A          178 -----IQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMY  251 (333)
T ss_dssp             -----EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEE
T ss_pred             -----ecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEc
Confidence                 0111234578899999855 5556688999999853 22111        11112 3678899999999888888


Q ss_pred             CCCcEEEEEcCCCCEEEEEecCC-------CcceeEECCCCCeEEEEEcCC
Q 022716          232 EDLFIDISNVHTGRTVHQIPCRA-------AMNSVEWNPKYNLLAYAGDDK  275 (293)
Q Consensus       232 ~d~~i~iw~~~~~~~~~~~~~~~-------~i~~~~~sp~~~~la~~~~d~  275 (293)
                      .++.|.+||. +++.+..+....       .+.+++|+|++..|..++.++
T Consensus       252 ~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g  301 (333)
T 2dg1_A          252 GQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI  301 (333)
T ss_dssp             TTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred             CCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence            8899999998 566666665432       478999999987776666554

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.72  E-value=5.1e-15  Score=124.47  Aligned_cols=215  Identities=11%  Similarity=0.076  Sum_probs=139.3

Q ss_pred             ccEEEEEECCCCCeEEEEeCC---Cc--EEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeC--------
Q 022716           21 KKVHSVAWNCTGTKLASGSVD---QT--ARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASG--------   87 (293)
Q Consensus        21 ~~v~~l~~s~~~~~l~s~~~d---g~--v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~--------   87 (293)
                      ..+..++|||||++|+.++.+   +.  |.+|+++..   ...  .+..+.. +..+.|+|++. .|+.++.        
T Consensus        59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g---~~~--~l~~~~~-~~~~~wspdg~-~l~~~~~~~~~~~~~  131 (347)
T 2gop_A           59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETL---SSK--KILEAKN-IRSLEWNEDSR-KLLIVGFKRREDEDF  131 (347)
T ss_dssp             ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTT---EEE--EEEEESE-EEEEEECTTSS-EEEEEEECCCC----
T ss_pred             ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCC---ceE--EEEcCCC-ccceeECCCCC-EEEEEEccCCCcCCc
Confidence            457889999999999988764   34  566666532   222  2222233 88999999864 4444442        


Q ss_pred             -------------------CCeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCC-------eEEEEEccccc
Q 022716           88 -------------------DKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDD-------ELTILDVRKFK  141 (293)
Q Consensus        88 -------------------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~-------~i~l~d~~~~~  141 (293)
                                         ...|.+||+.+++....+... .+..++|+|+| .++++..+.       ...+|.+.+.+
T Consensus       132 ~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~  209 (347)
T 2gop_A          132 IFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKP-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGK  209 (347)
T ss_dssp             -----CCCC---------CEEEEEEEETTTTEEEEEEEEE-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTE
T ss_pred             EEEcccceeecCcccccCccceEEEEECCCCeEEeeecCC-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCc
Confidence                               256899999888763333323 66788999999 777775542       33444433222


Q ss_pred             eeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCC--------CcEEEEeCCCCEEEEEeeccCC
Q 022716          142 PIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSAD--------SLVSLWDISEMLCVRTFTKLEW  213 (293)
Q Consensus       142 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d--------~~i~iwd~~~~~~~~~~~~~~~  213 (293)
                      ...                     +..+ ..+..+  +|+|+.|+.++.+        ..|.+||  +++.......+..
T Consensus       210 ~~~---------------------l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~  263 (347)
T 2gop_A          210 EEK---------------------MFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDR  263 (347)
T ss_dssp             EEE---------------------EEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCS
T ss_pred             eEE---------------------eccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCc
Confidence            111                     1111 122233  7899888776644        3688888  5544433445567


Q ss_pred             CeeE-EEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEecCCCcceeEECCCCCeEEEEEcCC
Q 022716          214 PVRT-ISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDK  275 (293)
Q Consensus       214 ~v~~-l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~d~  275 (293)
                      .+.. +.|+ ++ ++++++.++.++|| +.+++..........+.+++|+|  .++++++.+.
T Consensus       264 ~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~~~~~~v~~~~~s~--~~~~~~~~~~  321 (347)
T 2gop_A          264 GVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIAKGRHWIMGFDVDE--IVVYLKETAT  321 (347)
T ss_dssp             EEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEECSSSEEEEEEESS--SEEEEEECSS
T ss_pred             ccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEecCCCeEEeeeeeC--cEEEEEcCCC
Confidence            7886 9999 88 88999999999999 87666554455566788999999  5666666553

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.72  E-value=1.1e-15  Score=139.83  Aligned_cols=238  Identities=11%  Similarity=-0.013  Sum_probs=148.2

Q ss_pred             ceeecCccccEE---------EEEEC--CCCCe-EEEEeC-CCcEEEeecCCCCCCceeEEEeeC-----CcCCeeEEEE
Q 022716           13 SREYTGHKKKVH---------SVAWN--CTGTK-LASGSV-DQTARVWHIEPHGHGKVKDIELRG-----HADSVDQLCW   74 (293)
Q Consensus        13 ~~~~~~h~~~v~---------~l~~s--~~~~~-l~s~~~-dg~v~iw~~~~~~~~~~~~~~~~~-----h~~~i~~~~~   74 (293)
                      .+.+++|...+.         ...|+  |||+. |+.++. +..|.++++...+.+..  ..+..     |...+..++|
T Consensus        60 ~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~--~~l~~~~~~~~~~~~~~~~~  137 (662)
T 3azo_A           60 EESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVP--RPLTPVSAVGGGLRWADPVL  137 (662)
T ss_dssp             EEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCC--EECSCCCCSTTCEEEEEEEE
T ss_pred             cceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCC--EeccCCccCCCCccccCcEE
Confidence            345666766655         56565  99998 776554 45555555430010111  22333     5667889999


Q ss_pred             cCCCCCEEEEEeCC----------CeEEEEeCCC------Ceeeeee-eecCceEEEEEcCCCCEEEEEeCC--------
Q 022716           75 DPKHADLIATASGD----------KTVRLWDARS------GKCSQQA-ELSGENINITYKPDGTHIAVGNRD--------  129 (293)
Q Consensus        75 ~~~~~~~l~s~~~d----------~~i~vwd~~~------~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d--------  129 (293)
                      +|++ +.|++++.+          ..|.+||+.+      +...... ........++|+|||++|+..+.+        
T Consensus       138 spDg-~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~  216 (662)
T 3azo_A          138 LPER-GEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEG  216 (662)
T ss_dssp             ETTT-TEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTC
T ss_pred             CCCC-CEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCC
Confidence            9985 566677766          5899999987      5544333 333445568999999999988755        


Q ss_pred             CeEEEEEcc-ccc--eeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCC--cEEEEeCCCCEE
Q 022716          130 DELTILDVR-KFK--PIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADS--LVSLWDISEMLC  204 (293)
Q Consensus       130 ~~i~l~d~~-~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~--~i~iwd~~~~~~  204 (293)
                      ..|.+||+. +..  ....                   +...+...+..++|+|+|+++++++.++  .|.+||+..++.
T Consensus       217 ~~i~~~d~~~~g~~~~~~~-------------------l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~  277 (662)
T 3azo_A          217 TELKTARVTEDGRFADTRT-------------------LLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAA  277 (662)
T ss_dssp             EEEEEEEECTTSCEEEEEE-------------------EEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCE
T ss_pred             cEEEEEEECCCCcccccEE-------------------eCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCce
Confidence            378999987 331  1111                   1111234567788999999888888888  566667666654


Q ss_pred             EEEeeccCCC--------eeEEEEccCCCEEEEecCCCcEEEE--EcCCCCEEEEEec-CCCccee-EECCCCCeEEEEE
Q 022716          205 VRTFTKLEWP--------VRTISFSHTGDYIASASEDLFIDIS--NVHTGRTVHQIPC-RAAMNSV-EWNPKYNLLAYAG  272 (293)
Q Consensus       205 ~~~~~~~~~~--------v~~l~~sp~~~~l~s~s~d~~i~iw--~~~~~~~~~~~~~-~~~i~~~-~~sp~~~~la~~~  272 (293)
                      ......+...        +..++|+|+++++++++. +.++||  |..+++ +..+.. ...+..+ +++++.-++++++
T Consensus       278 ~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~s~~~~~~~~~~~~  355 (662)
T 3azo_A          278 TQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWAATLTVSGTRAVGVAAS  355 (662)
T ss_dssp             EESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEEEEEEEETTEEEEEEEE
T ss_pred             eecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEEEEEecCCCEEEEEEcC
Confidence            4332222211        567999999999999999 999999  544444 555543 3345555 4433333344444


Q ss_pred             cC
Q 022716          273 DD  274 (293)
Q Consensus       273 ~d  274 (293)
                      .+
T Consensus       356 ~~  357 (662)
T 3azo_A          356 PR  357 (662)
T ss_dssp             TT
T ss_pred             CC
Confidence            43

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.71  E-value=1.8e-14  Score=122.20  Aligned_cols=243  Identities=14%  Similarity=0.060  Sum_probs=155.4

Q ss_pred             CCCeEEEEe------CCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEe----------CCCeEEEE
Q 022716           31 TGTKLASGS------VDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATAS----------GDKTVRLW   94 (293)
Q Consensus        31 ~~~~l~s~~------~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~----------~d~~i~vw   94 (293)
                      +++++....      .|+.|.+||.....   .. ..+..+..+  .++++|++ +.++.+.          .++.|.+|
T Consensus        14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~---~~-~~i~~g~~p--~i~~spdg-~~lyv~~~~~~~~~~g~~~~~v~v~   86 (361)
T 2oiz_A           14 QENRIYVMDSVFMHLTESRVHVYDYTNGK---FL-GMVPTAFNG--HVQVSNDG-KKIYTMTTYHERITRGKRSDVVEVW   86 (361)
T ss_dssp             GGGEEEEEECCGGGGGGCEEEEEETTTCC---EE-EEEECCEEE--EEEECTTS-SEEEEEEEEETTSSSSCEEEEEEEE
T ss_pred             CCCEEEEECCCCCccccCeEEEEECCCCe---EE-EEecCCCCC--ceEECCCC-CEEEEEEecccccccCCCCCEEEEE
Confidence            455554432      47899999976432   21 234445444  78999975 4566654          36779999


Q ss_pred             eCCCCeeeeeeeec-------CceEEEEEcCCCCEEEEEeC--CCeEEEEEccccceeee-ecccce----------eee
Q 022716           95 DARSGKCSQQAELS-------GENINITYKPDGTHIAVGNR--DDELTILDVRKFKPIHR-RKFGYE----------VNE  154 (293)
Q Consensus        95 d~~~~~~~~~~~~~-------~~~~~~~~~~~~~~l~~~~~--d~~i~l~d~~~~~~~~~-~~~~~~----------~~~  154 (293)
                      |..+.+....+...       ..+..++++|||++|+++..  +++|.+||+++.+.+.. ...+..          ...
T Consensus        87 d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~  166 (361)
T 2oiz_A           87 DADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSF  166 (361)
T ss_dssp             ETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEE
T ss_pred             ECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeE
Confidence            99988877766543       34567999999999998864  58999999998877665 433211          111


Q ss_pred             eEEecCCCEEEEecCC-CCEE----------------EEEECCCCCEEEEecCCCcEEEEeCCCCE--EEEEeec-----
Q 022716          155 IAWNMTGEMFFLTTGN-AGCY----------------CIAIDPMGRYFAVGSADSLVSLWDISEML--CVRTFTK-----  210 (293)
Q Consensus       155 v~~~~~~~~~~~~~~~-~~~~----------------~~~~~~~~~~l~~gs~d~~i~iwd~~~~~--~~~~~~~-----  210 (293)
                      +...+++....+.... ..+.                .+...|++..++..+.++.+.++|+....  ....+..     
T Consensus       167 ~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~  246 (361)
T 2oiz_A          167 MTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDED  246 (361)
T ss_dssp             EEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHH
T ss_pred             EEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccc
Confidence            2333444433332211 1111                01112445566667788899999986432  2222211     


Q ss_pred             -c-C---CCeeEEEEccCCCEEEEecC-----------CCcEEEEEcCCCCEEEEEecCCCcceeEECCCCCeEEEEEcC
Q 022716          211 -L-E---WPVRTISFSHTGDYIASASE-----------DLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDD  274 (293)
Q Consensus       211 -~-~---~~v~~l~~sp~~~~l~s~s~-----------d~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~d  274 (293)
                       . .   .....++|+|+++.++.+..           ...|.+||..+++.+..++... ...++|+|+|++|++++. 
T Consensus       247 ~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n~-  324 (361)
T 2oiz_A          247 KAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTLDG-  324 (361)
T ss_dssp             HHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEEECS-
T ss_pred             cccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEEeCC-
Confidence             0 0   11223789999887765432           3579999999999999888777 999999999998888774 


Q ss_pred             CCCCCCCc
Q 022716          275 KNKYQADE  282 (293)
Q Consensus       275 ~~~~~~~~  282 (293)
                      +.+.++|.
T Consensus       325 ~~v~v~D~  332 (361)
T 2oiz_A          325 GNVNVYDI  332 (361)
T ss_dssp             SCEEEEEC
T ss_pred             CeEEEEEC
Confidence            54554443

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.69  E-value=4.1e-14  Score=114.68  Aligned_cols=236  Identities=10%  Similarity=-0.034  Sum_probs=158.2

Q ss_pred             cEEEEEECCCCCeEE-EEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCe
Q 022716           22 KVHSVAWNCTGTKLA-SGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGK  100 (293)
Q Consensus        22 ~v~~l~~s~~~~~l~-s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~  100 (293)
                      ...+++++++|+.++ +...++.|.+|+.....   .. .....+...+..+++.+++ .++++.. ++.|.+||.....
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~---~~-~~~~~~~~~p~~i~~~~~g-~l~v~~~-~~~i~~~d~~~~~   98 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTG---TT-VLPFNGLYQPQGLAVDGAG-TVYVTDF-NNRVVTLAAGSNN   98 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC--------E-ECCCCSCCSCCCEEECTTC-CEEEEET-TTEEEEECTTCSC
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcc---cc-eEeeCCcCCcceeEECCCC-CEEEEcC-CCEEEEEeCCCce
Confidence            788999999999777 54778999999865321   11 1112233456788888864 5666555 8899999987654


Q ss_pred             eeeee-eecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEEC
Q 022716          101 CSQQA-ELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAID  179 (293)
Q Consensus       101 ~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  179 (293)
                      ..... .....+..+++.|+|+.+++...++.|..|+..+.......                    ......+..++++
T Consensus        99 ~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~--------------------~~~~~~p~~i~~~  158 (270)
T 1rwi_B           99 QTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLP--------------------FTGLNDPDGVAVD  158 (270)
T ss_dssp             CEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECC--------------------CCSCCSCCCEEEC
T ss_pred             EeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeec--------------------cccCCCceeEEEe
Confidence            32221 11245778999999987777777889999975443211100                    0111234568889


Q ss_pred             CCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEE-ecCCCcce
Q 022716          180 PMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQI-PCRAAMNS  258 (293)
Q Consensus       180 ~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~-~~~~~i~~  258 (293)
                      ++++++++...++.|.+||................+..+++.|+|...++...++.|.+|+.......... .....+.+
T Consensus       159 ~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~  238 (270)
T 1rwi_B          159 NSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLA  238 (270)
T ss_dssp             TTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEE
T ss_pred             CCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCcee
Confidence            99998888888889999998876544332233356899999999988888888899999998665433211 11245788


Q ss_pred             eEECCCCCeEEEEEcCCCCCCCCcceEEEEeee
Q 022716          259 VEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE  291 (293)
Q Consensus       259 ~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~  291 (293)
                      ++++|+|+++++...+        +.+++|+++
T Consensus       239 i~~~~~g~l~v~~~~~--------~~v~~~~~~  263 (270)
T 1rwi_B          239 VAVDSDRTVYVADRGN--------DRVVKLTSL  263 (270)
T ss_dssp             EEECTTCCEEEEEGGG--------TEEEEECCC
T ss_pred             EEECCCCCEEEEECCC--------CEEEEEcCC
Confidence            9999999877776654        456666654

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.68  E-value=7.6e-14  Score=128.70  Aligned_cols=228  Identities=11%  Similarity=0.062  Sum_probs=149.6

Q ss_pred             CccccEEEEEECCCCCeEEEEeCCC-----cEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCe--
Q 022716           18 GHKKKVHSVAWNCTGTKLASGSVDQ-----TARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKT--   90 (293)
Q Consensus        18 ~h~~~v~~l~~s~~~~~l~s~~~dg-----~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~--   90 (293)
                      +|...+..++|||||++||.++.++     +|++||++..   ......+..  ..+..++|+|++ +.|+.++.++.  
T Consensus       122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg---~~~~~~~~~--~~~~~~~wspDg-~~l~~~~~~~~~~  195 (710)
T 2xdw_A          122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGA---KELPDVLER--VKFSCMAWTHDG-KGMFYNAYPQQDG  195 (710)
T ss_dssp             TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTT---EEEEEEEEE--ECSCCEEECTTS-SEEEEEECCCCSS
T ss_pred             CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCC---CCCcccccC--cccceEEEEeCC-CEEEEEEECCccc
Confidence            4555789999999999998776644     8999999753   222222222  225678999975 45666666655  


Q ss_pred             --------------EEEEeCCCCeee--eeeee---cCceEEEEEcCCCCEEEEEeC-----CCeEEEEEccc------c
Q 022716           91 --------------VRLWDARSGKCS--QQAEL---SGENINITYKPDGTHIAVGNR-----DDELTILDVRK------F  140 (293)
Q Consensus        91 --------------i~vwd~~~~~~~--~~~~~---~~~~~~~~~~~~~~~l~~~~~-----d~~i~l~d~~~------~  140 (293)
                                    |.+|++.++...  ...+.   ......+.|+|||++|+..+.     +..+.+||+.+      .
T Consensus       196 ~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~  275 (710)
T 2xdw_A          196 KSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITG  275 (710)
T ss_dssp             CCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCS
T ss_pred             cccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCC
Confidence                          999999877532  12222   223568899999999988765     56899999875      2


Q ss_pred             c-eeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCC----CcEEEEeCCCCE--EEEEeeccCC
Q 022716          141 K-PIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSAD----SLVSLWDISEML--CVRTFTKLEW  213 (293)
Q Consensus       141 ~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d----~~i~iwd~~~~~--~~~~~~~~~~  213 (293)
                      . .....                    ..+...... .++|+++.|+..+.+    +.|.+||+.++.  ....+..+..
T Consensus       276 ~~~~~~l--------------------~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~  334 (710)
T 2xdw_A          276 ILKWVKL--------------------IDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHE  334 (710)
T ss_dssp             SCCCEEE--------------------ECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCS
T ss_pred             ccceEEe--------------------eCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCC
Confidence            1 11111                    111111222 356777766555443    369999987753  1234444433


Q ss_pred             --CeeEEEEccCCCEEEEecCCCc--EEEEEcCCCCEEEEEec-CCCcceeEECCCCCeEEEEE
Q 022716          214 --PVRTISFSHTGDYIASASEDLF--IDISNVHTGRTVHQIPC-RAAMNSVEWNPKYNLLAYAG  272 (293)
Q Consensus       214 --~v~~l~~sp~~~~l~s~s~d~~--i~iw~~~~~~~~~~~~~-~~~i~~~~~sp~~~~la~~~  272 (293)
                        .+..++|++++.++++...|+.  |.+|+..+++.++.+.. ...+..++++|+++.++...
T Consensus       335 ~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~  398 (710)
T 2xdw_A          335 KDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQF  398 (710)
T ss_dssp             SCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEE
T ss_pred             CCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEE
Confidence              6888999988888899988885  56677767877666654 34577889999997766543

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.66  E-value=5.3e-15  Score=137.07  Aligned_cols=243  Identities=12%  Similarity=0.096  Sum_probs=149.9

Q ss_pred             EEEEECCCCCeEEEEeCC---------CcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEE
Q 022716           24 HSVAWNCTGTKLASGSVD---------QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLW   94 (293)
Q Consensus        24 ~~l~~s~~~~~l~s~~~d---------g~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vw   94 (293)
                      ..++|||||++|+.++.+         +.+.+||+....   .  ..+..|...+...+|+|++. .|+.+ .|+.|.+|
T Consensus        65 ~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~---~--~~l~~~~~~~~~~~~SPdG~-~la~~-~~~~i~~~  137 (740)
T 4a5s_A           65 NDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQ---L--ITEERIPNNTQWVTWSPVGH-KLAYV-WNNDIYVK  137 (740)
T ss_dssp             CEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTE---E--CCSSCCCTTEEEEEECSSTT-CEEEE-ETTEEEEE
T ss_pred             cceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCc---E--EEcccCCCcceeeEECCCCC-EEEEE-ECCeEEEE
Confidence            458899999999999887         556699997532   1  23556777899999999865 45555 47899999


Q ss_pred             eCCCCeeeeeee-ec------------------CceEEEEEcCCCCEEEEEeCCCe-EEEEEccccce-------eeeec
Q 022716           95 DARSGKCSQQAE-LS------------------GENINITYKPDGTHIAVGNRDDE-LTILDVRKFKP-------IHRRK  147 (293)
Q Consensus        95 d~~~~~~~~~~~-~~------------------~~~~~~~~~~~~~~l~~~~~d~~-i~l~d~~~~~~-------~~~~~  147 (293)
                      |+.+++..+... ..                  +....+.|+|||+.|+..+.|.+ +.+|++.....       .....
T Consensus       138 ~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~  217 (740)
T 4a5s_A          138 IEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVP  217 (740)
T ss_dssp             SSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEE
T ss_pred             ECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeec
Confidence            998876543211 11                  11124889999999998876543 77776532111       01111


Q ss_pred             c------cceeeeeEEecCC-------CEEEEec------CCCCEEEEEECCCCCEEEEec----CCCcEEEEeCCCCE-
Q 022716          148 F------GYEVNEIAWNMTG-------EMFFLTT------GNAGCYCIAIDPMGRYFAVGS----ADSLVSLWDISEML-  203 (293)
Q Consensus       148 ~------~~~~~~v~~~~~~-------~~~~~~~------~~~~~~~~~~~~~~~~l~~gs----~d~~i~iwd~~~~~-  203 (293)
                      +      ...+.-..|+..+       ....+..      +...+..++|+|+++.++...    .+..|.+||+.+++ 
T Consensus       218 yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~  297 (740)
T 4a5s_A          218 YPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSG  297 (740)
T ss_dssp             CCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTT
T ss_pred             CCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCcc
Confidence            0      1122333455544       2333332      444577899999999666543    23479999988765 


Q ss_pred             ---EEE--Ee--eccCCCee-----EEEEccCCCEEE-Eec-CCC--cEEEEEcCCCCEEEEEecCCCcceeEECCCCCe
Q 022716          204 ---CVR--TF--TKLEWPVR-----TISFSHTGDYIA-SAS-EDL--FIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNL  267 (293)
Q Consensus       204 ---~~~--~~--~~~~~~v~-----~l~~sp~~~~l~-s~s-~d~--~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~  267 (293)
                         +..  .+  .++...+.     ...|+|||+.++ ..+ .+|  .|++|+..++.........-.+..+.+ ++++.
T Consensus       298 ~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g~~~v~~~~~-~d~~~  376 (740)
T 4a5s_A          298 RWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIEA-LTSDY  376 (740)
T ss_dssp             EEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESCCSSSCEEEEEE-ECSSE
T ss_pred             ccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEecccCCEEEEEEEE-EeCCE
Confidence               221  11  33554444     788999999877 665 344  488889876654432222333444432 44766


Q ss_pred             EEEEEcC
Q 022716          268 LAYAGDD  274 (293)
Q Consensus       268 la~~~~d  274 (293)
                      |+..+..
T Consensus       377 i~f~~~~  383 (740)
T 4a5s_A          377 LYYISNE  383 (740)
T ss_dssp             EEEEESC
T ss_pred             EEEEEec
Confidence            6666543

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.66  E-value=7.9e-14  Score=116.72  Aligned_cols=205  Identities=10%  Similarity=0.053  Sum_probs=144.5

Q ss_pred             CccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEe-------eCCcCCeeEEEEcCCCCCEEEEEe-CCC
Q 022716           18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIEL-------RGHADSVDQLCWDPKHADLIATAS-GDK   89 (293)
Q Consensus        18 ~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~-------~~h~~~i~~~~~~~~~~~~l~s~~-~d~   89 (293)
                      ++-.....++++|+|+.+++...++.|++|+.+... .....+..       .++......++++|+++.++++.+ .++
T Consensus        88 ~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~-~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~  166 (329)
T 3fvz_A           88 NLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKE-GPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNS  166 (329)
T ss_dssp             TTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSS-CCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCC
T ss_pred             CccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCe-EEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCC
Confidence            344578999999999988888889999999975321 01111110       234456789999985567888876 699


Q ss_pred             eEEEEeCCCCeeeeeeeec-----------CceEEEEEcCC-CCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEE
Q 022716           90 TVRLWDARSGKCSQQAELS-----------GENINITYKPD-GTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAW  157 (293)
Q Consensus        90 ~i~vwd~~~~~~~~~~~~~-----------~~~~~~~~~~~-~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~  157 (293)
                      .|++|| .++.....+...           ..+..++++|+ +..+++...+++|.+||..+.+.+......        
T Consensus       167 ~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~--------  237 (329)
T 3fvz_A          167 RIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHA--------  237 (329)
T ss_dssp             EEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCT--------
T ss_pred             eEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEecc--------
Confidence            999999 455555444321           12678999998 677777778899999998755544433211        


Q ss_pred             ecCCCEEEEecCCCCEEEEEECC------CCCEEEEecCCCcEEEEeCCCCEEEEEee---ccCCCeeEEEEccCCCEEE
Q 022716          158 NMTGEMFFLTTGNAGCYCIAIDP------MGRYFAVGSADSLVSLWDISEMLCVRTFT---KLEWPVRTISFSHTGDYIA  228 (293)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~~gs~d~~i~iwd~~~~~~~~~~~---~~~~~v~~l~~sp~~~~l~  228 (293)
                                .....+..++++|      +++.+++...+..|.+||+.+++.+..+.   .+...+..|+++|+|..++
T Consensus       238 ----------~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyv  307 (329)
T 3fvz_A          238 ----------SFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYI  307 (329)
T ss_dssp             ----------TTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEE
T ss_pred             ----------ccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEE
Confidence                      1112233445555      44444555566799999999998887763   4556789999999998889


Q ss_pred             EecCCCcEEEEEcC
Q 022716          229 SASEDLFIDISNVH  242 (293)
Q Consensus       229 s~s~d~~i~iw~~~  242 (293)
                      +...++.|++|+..
T Consensus       308 ad~~~~~I~~~~~~  321 (329)
T 3fvz_A          308 GDAHTNTVWKFTLT  321 (329)
T ss_dssp             EESSSCCEEEEEEE
T ss_pred             EECCCCEEEEEeCC
Confidence            99999999999875

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.65  E-value=4.5e-13  Score=110.84  Aligned_cols=231  Identities=10%  Similarity=0.054  Sum_probs=150.2

Q ss_pred             ecCccccEEEEEECCCCCeEEE-------EeCCCcEEEeecCCCCCCceeEEEe---eCCcCCeeEEEEcCCCCCEEEEE
Q 022716           16 YTGHKKKVHSVAWNCTGTKLAS-------GSVDQTARVWHIEPHGHGKVKDIEL---RGHADSVDQLCWDPKHADLIATA   85 (293)
Q Consensus        16 ~~~h~~~v~~l~~s~~~~~l~s-------~~~dg~v~iw~~~~~~~~~~~~~~~---~~h~~~i~~~~~~~~~~~~l~s~   85 (293)
                      +.+.-....+++|+++|+.+++       +..++.|.+|+....   .......   .++...+..+.+.++++.++++ 
T Consensus        13 ~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g---~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~-   88 (314)
T 1pjx_A           13 VTEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTG---KKTVICKPEVNGYGGIPAGCQCDRDANQLFVA-   88 (314)
T ss_dssp             EECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTC---CEEEEECCEETTEECCEEEEEECSSSSEEEEE-
T ss_pred             hhccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCC---cEEEEEecccCCCCCCCceEEEecCCCcEEEE-
Confidence            3444456789999999988887       677899999987543   2222211   1244668889998863345554 


Q ss_pred             eCCCeEEEEeCCCCeeeee-eee-----cCceEEEEEcCCCCEEEEEeCC---------------CeEEEEEccccceee
Q 022716           86 SGDKTVRLWDARSGKCSQQ-AEL-----SGENINITYKPDGTHIAVGNRD---------------DELTILDVRKFKPIH  144 (293)
Q Consensus        86 ~~d~~i~vwd~~~~~~~~~-~~~-----~~~~~~~~~~~~~~~l~~~~~d---------------~~i~l~d~~~~~~~~  144 (293)
                      +....|.+||.. ++.... ...     ...+..+++.|+|+.+++...+               +.+..+|.. .+...
T Consensus        89 ~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~  166 (314)
T 1pjx_A           89 DMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQ  166 (314)
T ss_dssp             ETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEE
T ss_pred             ECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEE
Confidence            444578899988 654332 211     1235689999999877776554               455555543 21111


Q ss_pred             eecccceeeeeEEecCCCEEEEecCCCCEEEEEEC----CCCCEE-EEecCCCcEEEEeCC-CCEE-----EEEeeccC-
Q 022716          145 RRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAID----PMGRYF-AVGSADSLVSLWDIS-EMLC-----VRTFTKLE-  212 (293)
Q Consensus       145 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l-~~gs~d~~i~iwd~~-~~~~-----~~~~~~~~-  212 (293)
                                           ..........++++    |+++.+ ++...++.|.+||.+ ++..     ...+..+. 
T Consensus       167 ---------------------~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~  225 (314)
T 1pjx_A          167 ---------------------VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHE  225 (314)
T ss_dssp             ---------------------EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSS
T ss_pred             ---------------------eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCC
Confidence                                 00111223567778    888654 555678899999976 4431     22233332 


Q ss_pred             CCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEecC-CCcceeEECCCCCeEEEEEc
Q 022716          213 WPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCR-AAMNSVEWNPKYNLLAYAGD  273 (293)
Q Consensus       213 ~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~-~~i~~~~~sp~~~~la~~~~  273 (293)
                      ..+..++++++|+++++...++.|.+||..+++.+..+... ..+.+++|+|+++.|..++.
T Consensus       226 ~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~  287 (314)
T 1pjx_A          226 GGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEH  287 (314)
T ss_dssp             CEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEET
T ss_pred             CCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeC
Confidence            45788999999998888888899999999877765555443 56889999999996555554

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.64  E-value=3.5e-14  Score=130.61  Aligned_cols=225  Identities=12%  Similarity=0.048  Sum_probs=144.5

Q ss_pred             CccccEEEEEECCCCCeEE-----EEeCCCcEEEeecCCCCCCceeEEEeeCCcCCe--eEEEEcCCCCCEEEEEeCCCe
Q 022716           18 GHKKKVHSVAWNCTGTKLA-----SGSVDQTARVWHIEPHGHGKVKDIELRGHADSV--DQLCWDPKHADLIATASGDKT   90 (293)
Q Consensus        18 ~h~~~v~~l~~s~~~~~l~-----s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i--~~~~~~~~~~~~l~s~~~d~~   90 (293)
                      +|...+.+++|||||++||     .|+.+.+|++||++......      ..+...+  ..++|+|++ +.|+.++.|..
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~------~~~~~~~~~~~~~wspDg-~~l~~~~~d~~  190 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK------VDVIEGGKYATPKWTPDS-KGFYYEWLPTD  190 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS------SCCBSCCTTCCCEECTTS-SEEEEEECCCC
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC------CcccCcccccceEEecCC-CEEEEEEecCC
Confidence            4556799999999999998     44456789999997542110      1122222  578999985 56667777665


Q ss_pred             -------------EEEEeCCCCeee--eeeee---cCceEEEEEcCCCCEEEEEeCCC----eEEEEEccccceeeeecc
Q 022716           91 -------------VRLWDARSGKCS--QQAEL---SGENINITYKPDGTHIAVGNRDD----ELTILDVRKFKPIHRRKF  148 (293)
Q Consensus        91 -------------i~vwd~~~~~~~--~~~~~---~~~~~~~~~~~~~~~l~~~~~d~----~i~l~d~~~~~~~~~~~~  148 (293)
                                   |++|++.++...  .....   ......+.|+|||++++..+.++    .+.++|..+.....    
T Consensus       191 ~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~----  266 (695)
T 2bkl_A          191 PSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRL----  266 (695)
T ss_dssp             TTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEE----
T ss_pred             CCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEE----
Confidence                         999999877522  22222   13466889999999998887665    56666543322111    


Q ss_pred             cceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEec---CCCcEEEEeCCCCEE--EEEeec-c-CCCeeEEEEc
Q 022716          149 GYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGS---ADSLVSLWDISEMLC--VRTFTK-L-EWPVRTISFS  221 (293)
Q Consensus       149 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs---~d~~i~iwd~~~~~~--~~~~~~-~-~~~v~~l~~s  221 (293)
                                       +..+........+ +++.+++.+.   .++.|.+||+.++..  ...+.. + ...+..++|+
T Consensus       267 -----------------l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~  328 (695)
T 2bkl_A          267 -----------------LVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV  328 (695)
T ss_dssp             -----------------EEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE
T ss_pred             -----------------eecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE
Confidence                             1111122223333 4555444443   357899999876532  123333 3 4468888888


Q ss_pred             cCCCEEEEecCCCcEEEEEcC-CCCEEEEEec--CCCcceeEECCCCCeEEEEE
Q 022716          222 HTGDYIASASEDLFIDISNVH-TGRTVHQIPC--RAAMNSVEWNPKYNLLAYAG  272 (293)
Q Consensus       222 p~~~~l~s~s~d~~i~iw~~~-~~~~~~~~~~--~~~i~~~~~sp~~~~la~~~  272 (293)
                       ++.++++...|+..+||... +++.++.+..  ...+..++++|+++.++...
T Consensus       329 -~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~  381 (695)
T 2bkl_A          329 -GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVF  381 (695)
T ss_dssp             -TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEE
T ss_pred             -CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEE
Confidence             77888999999998888665 4665655543  34578899999998776444

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.64  E-value=5.5e-13  Score=108.77  Aligned_cols=218  Identities=12%  Similarity=0.056  Sum_probs=157.4

Q ss_pred             CCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCc-CCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeeeec
Q 022716           30 CTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHA-DSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELS  108 (293)
Q Consensus        30 ~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~-~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~  108 (293)
                      ..++.|++++.|+.|.+||.++.   . ..-++..+. ..+.++.+.|++ ++++  +.++.|..||. +++.+..+...
T Consensus         3 ~~~~~lv~~~~~~~v~~~d~~tG---~-~~w~~~~~~~~~~~~~~~~pdG-~ilv--s~~~~V~~~d~-~G~~~W~~~~~   74 (276)
T 3no2_A            3 SPQHLLVGGSGWNKIAIINKDTK---E-IVWEYPLEKGWECNSVAATKAG-EILF--SYSKGAKMITR-DGRELWNIAAP   74 (276)
T ss_dssp             CCCEEEEECTTCSEEEEEETTTT---E-EEEEEECCTTCCCCEEEECTTS-CEEE--ECBSEEEEECT-TSCEEEEEECC
T ss_pred             CCCcEEEeeCCCCEEEEEECCCC---e-EEEEeCCCccCCCcCeEECCCC-CEEE--eCCCCEEEECC-CCCEEEEEcCC
Confidence            45678999999999999998542   2 223344444 457888899875 6776  45788999998 78877776654


Q ss_pred             --CceEEEEEcCCCCEEEEEeC-CCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEE
Q 022716          109 --GENINITYKPDGTHIAVGNR-DDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYF  185 (293)
Q Consensus       109 --~~~~~~~~~~~~~~l~~~~~-d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  185 (293)
                        ..+.++.+.|+|+.+++.+. ++++..+|. +.+.+........+.              ........++..++++++
T Consensus        75 ~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~--------------~~~~~~~~v~~~~~G~~l  139 (276)
T 3no2_A           75 AGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIE--------------RPHAQFRQINKNKKGNYL  139 (276)
T ss_dssp             TTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCS--------------SGGGSCSCCEECTTSCEE
T ss_pred             CCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCC--------------cccccccCceECCCCCEE
Confidence              34567889999999999887 777777775 333333322111000              000112234668899999


Q ss_pred             EEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEecCC-------Ccce
Q 022716          186 AVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRA-------AMNS  258 (293)
Q Consensus       186 ~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~-------~i~~  258 (293)
                      ++...++.|..||.+ ++.+-++... ..+.++.+.++|+.+++++.++.|..+|..+|+.+.++....       .+..
T Consensus       140 v~~~~~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~  217 (276)
T 3no2_A          140 VPLFATSEVREIAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQ  217 (276)
T ss_dssp             EEETTTTEEEEECTT-SCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEE
T ss_pred             EEecCCCEEEEECCC-CCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCcccccccc
Confidence            999999999999988 8887777554 456678889999999999999999999999999988875321       1567


Q ss_pred             eEECCCCCeEEEEE
Q 022716          259 VEWNPKYNLLAYAG  272 (293)
Q Consensus       259 ~~~sp~~~~la~~~  272 (293)
                      +...++|+.+++..
T Consensus       218 ~~~~~~G~i~v~~~  231 (276)
T 3no2_A          218 LFPLQNGGLYICNW  231 (276)
T ss_dssp             EEECTTSCEEEEEE
T ss_pred             ceEcCCCCEEEEec
Confidence            78889999988874

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.64  E-value=2.3e-14  Score=122.23  Aligned_cols=210  Identities=13%  Similarity=0.042  Sum_probs=131.4

Q ss_pred             EeeCCcCCeeE-----EEEcCCCCCEEEEEeC-CC--eEEEEeCCCCeeeeeeeecCceE-EEEEcCCCCEEEEEeCCCe
Q 022716           61 ELRGHADSVDQ-----LCWDPKHADLIATASG-DK--TVRLWDARSGKCSQQAELSGENI-NITYKPDGTHIAVGNRDDE  131 (293)
Q Consensus        61 ~~~~h~~~i~~-----~~~~~~~~~~l~s~~~-d~--~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~d~~  131 (293)
                      .+..|......     .+|+|++. .|+.++. ++  .|.+||+.+++.......+.... ..+|+|||+.|+.++.++.
T Consensus        25 ~lt~~~~~~~~~~~~~~~~SpDg~-~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~  103 (388)
T 3pe7_A           25 RLTPPDVTCHRNYFYQKCFTRDGS-KLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRN  103 (388)
T ss_dssp             ECSCTTSCEECCCTTSCCBCTTSC-EEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTE
T ss_pred             EecCCcccccchhhcCccCCCCCC-EEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCe
Confidence            34455544443     68999864 5555555 66  48888998887766554443333 5789999999999999999


Q ss_pred             EEEEEccccceeeeecccce-e-------------------------------------------eeeEEecC-CCEEEE
Q 022716          132 LTILDVRKFKPIHRRKFGYE-V-------------------------------------------NEIAWNMT-GEMFFL  166 (293)
Q Consensus       132 i~l~d~~~~~~~~~~~~~~~-~-------------------------------------------~~v~~~~~-~~~~~~  166 (293)
                      +.+||+.+.+.......+.. +                                           ....|+.. ++...+
T Consensus       104 l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l  183 (388)
T 3pe7_A          104 LMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVI  183 (388)
T ss_dssp             EEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEE
T ss_pred             EEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEe
Confidence            99999987665433221111 1                                           11122221 222223


Q ss_pred             ecCCCCEEEEEECC-CCCEEEEecCC------CcEEEEeCCCCEEEEEeeccC--CCeeEEEEccCCCEEEEecC--C--
Q 022716          167 TTGNAGCYCIAIDP-MGRYFAVGSAD------SLVSLWDISEMLCVRTFTKLE--WPVRTISFSHTGDYIASASE--D--  233 (293)
Q Consensus       167 ~~~~~~~~~~~~~~-~~~~l~~gs~d------~~i~iwd~~~~~~~~~~~~~~--~~v~~l~~sp~~~~l~s~s~--d--  233 (293)
                      ..+...+..++++| +++.|+....+      ..|.++|...... ..+..+.  ..+...+|+|||+.|+..+.  +  
T Consensus       184 ~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~  262 (388)
T 3pe7_A          184 LQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSP  262 (388)
T ss_dssp             EEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECTTSSCEEEEEEETTCC
T ss_pred             ecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECCCCCEEEEEecCCCCC
Confidence            33344567889999 99988877653      3788888766543 3444443  25778899999998866543  2  


Q ss_pred             -CcEEEEEcCCCCEEEEEecCC------CcceeEECCCCCeEEEEE
Q 022716          234 -LFIDISNVHTGRTVHQIPCRA------AMNSVEWNPKYNLLAYAG  272 (293)
Q Consensus       234 -~~i~iw~~~~~~~~~~~~~~~------~i~~~~~sp~~~~la~~~  272 (293)
                       ..|++||+.+++.........      ....+.|+|+|+.|++..
T Consensus       263 ~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~  308 (388)
T 3pe7_A          263 DRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDV  308 (388)
T ss_dssp             CEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC----
T ss_pred             cceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEe
Confidence             239999999987533222111      134468999999888764

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.64  E-value=5.4e-12  Score=103.36  Aligned_cols=242  Identities=9%  Similarity=0.009  Sum_probs=166.1

Q ss_pred             CccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCC
Q 022716           18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDAR   97 (293)
Q Consensus        18 ~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~   97 (293)
                      .+...+.+++++++|+..++...++.|.+||.. .   .........+...+..+++.+++ .++++...++.|..||..
T Consensus        12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~---~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~   86 (299)
T 2z2n_A           12 NQDTGPYGITVSDKGKVWITQHKANMISCINLD-G---KITEYPLPTPDAKVMCLTISSDG-EVWFTENAANKIGRITKK   86 (299)
T ss_dssp             SSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-C---CEEEEECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECTT
T ss_pred             CcCCCccceEECCCCCEEEEecCCCcEEEEcCC-C---CeEEecCCcccCceeeEEECCCC-CEEEeCCCCCeEEEECCC
Confidence            455789999999999987777668999999876 2   22222333345678899998764 577776668899999976


Q ss_pred             CCeeeeeeee---cCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEE
Q 022716           98 SGKCSQQAEL---SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCY  174 (293)
Q Consensus        98 ~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  174 (293)
                       ++. ..+..   ...+..+++.|+|+.+++...++.+..+|. +..... ..                  .......+.
T Consensus        87 -g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~-~~------------------~~~~~~~~~  144 (299)
T 2z2n_A           87 -GII-KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIRE-YE------------------LPNKGSYPS  144 (299)
T ss_dssp             -SCE-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEE-EE------------------CSSTTCCEE
T ss_pred             -CcE-EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEE-ec------------------CCCCCCCCc
Confidence             332 22221   235678899999988887777889999987 322111 00                  001123467


Q ss_pred             EEEECCCCCEEEEecCCCcEEEEeCCCCEEEEE-eeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEec-
Q 022716          175 CIAIDPMGRYFAVGSADSLVSLWDISEMLCVRT-FTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPC-  252 (293)
Q Consensus       175 ~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~-~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~-  252 (293)
                      .++++++++.+++...++.|..||. +++.... .......+..+++.++|++.++...++.|.+++. +++... +.. 
T Consensus       145 ~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~  221 (299)
T 2z2n_A          145 FITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE-FKIP  221 (299)
T ss_dssp             EEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECS
T ss_pred             eEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE-EECC
Confidence            8899999998888888889999998 5543322 2233456889999999998888777889999999 766433 322 


Q ss_pred             --CCCcceeEECCCCCeEEEEEcCCCCCCCC-cceEEEEe
Q 022716          253 --RAAMNSVEWNPKYNLLAYAGDDKNKYQAD-EGVFRIYG  289 (293)
Q Consensus       253 --~~~i~~~~~sp~~~~la~~~~d~~~~~~~-~~~~~~~~  289 (293)
                        ...+..++++|+++++++...++.++.++ .+.++.|.
T Consensus       222 ~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~  261 (299)
T 2z2n_A          222 TPNARPHAITAGAGIDLWFTEWGANKIGRLTSNNIIEEYP  261 (299)
T ss_dssp             STTCCEEEEEECSTTCEEEEETTTTEEEEEETTTEEEEEE
T ss_pred             CCCCCceeEEECCCCCEEEeccCCceEEEECCCCceEEEe
Confidence              24578899999998777664555555544 35555553

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.62  E-value=8.5e-13  Score=107.94  Aligned_cols=198  Identities=9%  Similarity=0.069  Sum_probs=138.1

Q ss_pred             CccccEEEEEE-CCCCCeEEEEeC-CCcEEEeecCCCCCCceeEEEe-eCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEE
Q 022716           18 GHKKKVHSVAW-NCTGTKLASGSV-DQTARVWHIEPHGHGKVKDIEL-RGHADSVDQLCWDPKHADLIATASGDKTVRLW   94 (293)
Q Consensus        18 ~h~~~v~~l~~-s~~~~~l~s~~~-dg~v~iw~~~~~~~~~~~~~~~-~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vw   94 (293)
                      +|...+.++++ .++++.+++... ++.|++|+.+.    ... ..+ ..+...+..+++.|++ .++++...++.|.+|
T Consensus        74 ~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~g----~~~-~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~  147 (286)
T 1q7f_A           74 SQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYG----QFV-RKFGATILQHPRGVTVDNKG-RIIVVECKVMRVIIF  147 (286)
T ss_dssp             TCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTS----CEE-EEECTTTCSCEEEEEECTTS-CEEEEETTTTEEEEE
T ss_pred             ccccCceEEEEEcCCCeEEEEcCCCCCEEEEECCCC----cEE-EEecCccCCCceEEEEeCCC-CEEEEECCCCEEEEE
Confidence            34567899999 577776666644 89999998432    211 122 2344567899999875 688877788999999


Q ss_pred             eCCCCeeeeeeee---cCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCC
Q 022716           95 DARSGKCSQQAEL---SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNA  171 (293)
Q Consensus        95 d~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  171 (293)
                      |.. ++....+..   ...+..++++|+|+.+++...++.|.+||.... .+....           ..+       ...
T Consensus       148 ~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~-~~~~~~-----------~~g-------~~~  207 (286)
T 1q7f_A          148 DQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQ-YLRQIG-----------GEG-------ITN  207 (286)
T ss_dssp             CTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCC-EEEEES-----------CTT-------TSC
T ss_pred             cCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCC-EEEEEc-----------cCC-------ccC
Confidence            964 444444332   234678999999998777778899999997432 111110           000       113


Q ss_pred             CEEEEEECCCCCEEEEecCCC-cEEEEeCCCCEEEEEeeccC--CCeeEEEEccCCCEEEEecCCCcEEEEEcCC
Q 022716          172 GCYCIAIDPMGRYFAVGSADS-LVSLWDISEMLCVRTFTKLE--WPVRTISFSHTGDYIASASEDLFIDISNVHT  243 (293)
Q Consensus       172 ~~~~~~~~~~~~~l~~gs~d~-~i~iwd~~~~~~~~~~~~~~--~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~  243 (293)
                      .+..++++|+++++++...++ .|.+||.. +..+..+..+.  ..+.+++++|+|+++++ +.|+.|++|+...
T Consensus       208 ~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~  280 (286)
T 1q7f_A          208 YPIGVGINSNGEILIADNHNNFNLTIFTQD-GQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQ  280 (286)
T ss_dssp             SEEEEEECTTCCEEEEECSSSCEEEEECTT-SCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred             CCcEEEECCCCCEEEEeCCCCEEEEEECCC-CCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccc
Confidence            467899999999998888886 99999964 55555665443  24779999999987777 5689999998754

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.61  E-value=5.1e-13  Score=111.77  Aligned_cols=219  Identities=11%  Similarity=0.053  Sum_probs=149.9

Q ss_pred             ccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCe
Q 022716           21 KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGK  100 (293)
Q Consensus        21 ~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~  100 (293)
                      .....+++. .++..++...++.|.+||.....  ...  .+. .......+++++++ .++++...++.|.+||..+++
T Consensus        44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~--~~~--~i~-~~~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~  116 (328)
T 3dsm_A           44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFK--EVG--RIT-GFTSPRYIHFLSDE-KAYVTQIWDYRIFIINPKTYE  116 (328)
T ss_dssp             SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCC--EEE--EEE-CCSSEEEEEEEETT-EEEEEEBSCSEEEEEETTTTE
T ss_pred             ccceEEEEE-CCEEEEEEcCCCEEEEEECcccE--EEE--EcC-CCCCCcEEEEeCCC-eEEEEECCCCeEEEEECCCCe
Confidence            346778774 45555666678999999987532  112  222 23456788887764 555555589999999999988


Q ss_pred             eeeeeeecC------ceEEEEEcCCCCEEEEEe--CCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCC
Q 022716          101 CSQQAELSG------ENINITYKPDGTHIAVGN--RDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAG  172 (293)
Q Consensus       101 ~~~~~~~~~------~~~~~~~~~~~~~l~~~~--~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  172 (293)
                      ....+....      .+..+++ . +..+.++.  .+++|.++|+++.+.......+.                     .
T Consensus       117 ~~~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~---------------------~  173 (328)
T 3dsm_A          117 ITGYIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETDKVVDELTIGI---------------------Q  173 (328)
T ss_dssp             EEEEEECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTTEEEEEEECSS---------------------C
T ss_pred             EEEEEEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCC---------------------C
Confidence            777666555      5667777 3 44555554  48899999998876554432221                     1


Q ss_pred             EEEEEECCCCCEEEEecCC----------CcEEEEeCCCCEEEEEeecc-CCCeeEEEEccCCCEEEEecCCCcEEEEEc
Q 022716          173 CYCIAIDPMGRYFAVGSAD----------SLVSLWDISEMLCVRTFTKL-EWPVRTISFSHTGDYIASASEDLFIDISNV  241 (293)
Q Consensus       173 ~~~~~~~~~~~~l~~gs~d----------~~i~iwd~~~~~~~~~~~~~-~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~  241 (293)
                      ...++++|+++++++...+          +.|.++|.++++....+... ...+..++|+|++++|..+..  .|.++|.
T Consensus       174 p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~  251 (328)
T 3dsm_A          174 PTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPV  251 (328)
T ss_dssp             BCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEET
T ss_pred             ccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEEC
Confidence            2346778888877777655          78999999998877665432 236899999999998877655  8999999


Q ss_pred             CCCCEEE--EEec-CCCcceeEECCC-CCeEEEE
Q 022716          242 HTGRTVH--QIPC-RAAMNSVEWNPK-YNLLAYA  271 (293)
Q Consensus       242 ~~~~~~~--~~~~-~~~i~~~~~sp~-~~~la~~  271 (293)
                      .+++...  .+.. ......++++|+ +.++++.
T Consensus       252 ~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~  285 (328)
T 3dsm_A          252 EADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVAD  285 (328)
T ss_dssp             TCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEE
T ss_pred             CCCceeeeeeecCCCCceEEEEEcCCCCeEEEEc
Confidence            8877532  1121 235678999994 5555554

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.61  E-value=2.7e-13  Score=113.93  Aligned_cols=211  Identities=8%  Similarity=-0.016  Sum_probs=132.5

Q ss_pred             ccEEEEEECCCCCeEEEEe---------CCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCC---
Q 022716           21 KKVHSVAWNCTGTKLASGS---------VDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD---   88 (293)
Q Consensus        21 ~~v~~l~~s~~~~~l~s~~---------~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d---   88 (293)
                      ..+..+++  ||++++...         .++.|.+|+++..   ...  .+    ..+..+.|+|++. .|+.++.+   
T Consensus        15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~---~~~--~l----~~~~~~~~SpDg~-~la~~~~~~~~   82 (347)
T 2gop_A           15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNN---ARR--FI----ENATMPRISPDGK-KIAFMRANEEK   82 (347)
T ss_dssp             CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTC---CEE--EE----ESCEEEEECTTSS-EEEEEEEETTT
T ss_pred             EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCC---ceE--Ec----ccCCCeEECCCCC-EEEEEEeccCC
Confidence            46778888  999887642         3677889988743   222  22    4578889999864 55555443   


Q ss_pred             C--eEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCC---------------------------CeEEEEEccc
Q 022716           89 K--TVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRD---------------------------DELTILDVRK  139 (293)
Q Consensus        89 ~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---------------------------~~i~l~d~~~  139 (293)
                      +  .|.+||+.+++......... +..++|+|||+.|+..+.+                           ..+.+||+.+
T Consensus        83 ~~~~l~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~  161 (347)
T 2gop_A           83 KVSEIWVADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTES  161 (347)
T ss_dssp             TEEEEEEEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTT
T ss_pred             CcceEEEEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCC
Confidence            3  47788888887665555444 7789999999999888643                           4566677665


Q ss_pred             cceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCC-------cEEEEeCCCCEEEEEeeccC
Q 022716          140 FKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADS-------LVSLWDISEMLCVRTFTKLE  212 (293)
Q Consensus       140 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~-------~i~iwd~~~~~~~~~~~~~~  212 (293)
                      .+.....                    .. . .+..++++|++ ++++++.++       ...||.+.+++. ..+..+ 
T Consensus       162 ~~~~~~l--------------------~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~l~~~-  216 (347)
T 2gop_A          162 EEVIEEF--------------------EK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE-EKMFEK-  216 (347)
T ss_dssp             TEEEEEE--------------------EE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE-EEEEEE-
T ss_pred             CeEEeee--------------------cC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce-EEeccC-
Confidence            4431111                    11 1 33456777888 666665432       334443335543 344444 


Q ss_pred             CCeeEEEEccCCCEEEEecCC--------CcEEEEEcCCCCEEEEEec-CCCcce-eEECCCCCeEEEEEcCC
Q 022716          213 WPVRTISFSHTGDYIASASED--------LFIDISNVHTGRTVHQIPC-RAAMNS-VEWNPKYNLLAYAGDDK  275 (293)
Q Consensus       213 ~~v~~l~~sp~~~~l~s~s~d--------~~i~iw~~~~~~~~~~~~~-~~~i~~-~~~sp~~~~la~~~~d~  275 (293)
                      ..+..+  +|+|++|+.++.+        ..|.+||  +++....... ...+.. +.|+ ++ ++++++.++
T Consensus       217 ~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~  283 (347)
T 2gop_A          217 VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEG  283 (347)
T ss_dssp             ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETT
T ss_pred             cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCC
Confidence            455544  9999999887754        3578888  5543322222 345775 8999 88 888887764

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.61  E-value=2.8e-13  Score=113.21  Aligned_cols=233  Identities=8%  Similarity=-0.014  Sum_probs=158.9

Q ss_pred             cEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCee
Q 022716           22 KVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKC  101 (293)
Q Consensus        22 ~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~  101 (293)
                      .|.+++|++++..++..+.++.++.|.-      . ....+..+...+..++|++++ .+++++..++.|.+||..+++.
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~g-~l~~~~~~~~~i~~~d~~~~~~   78 (333)
T 2dg1_A            7 DLPTLFYSGKSNSAVPIISESELQTITA------E-PWLEISKKGLQLEGLNFDRQG-QLFLLDVFEGNIFKINPETKEI   78 (333)
T ss_dssp             CCCBCCSCGGGGCSSCCCCGGGSCEEEC------E-EEEEEESSCCCEEEEEECTTS-CEEEEETTTCEEEEECTTTCCE
T ss_pred             ccceeeecCCccceeEEeecccCccccc------c-eeEEEeccCccccCcEECCCC-CEEEEECCCCEEEEEeCCCCcE
Confidence            5678889999888888888999999931      1 122455666677899999864 5777888899999999988775


Q ss_pred             eeee-eecCceEEEEEcCCCCEEEEEeCC----CeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEE
Q 022716          102 SQQA-ELSGENINITYKPDGTHIAVGNRD----DELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCI  176 (293)
Q Consensus       102 ~~~~-~~~~~~~~~~~~~~~~~l~~~~~d----~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  176 (293)
                      .... .....+..++++|+|+.+++...+    +.|.+||.++.........                  ......+..+
T Consensus        79 ~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~------------------~~~~~~~~~i  140 (333)
T 2dg1_A           79 KRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIED------------------LSTAYCIDDM  140 (333)
T ss_dssp             EEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECS------------------SSSCCCEEEE
T ss_pred             EEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEcc------------------CccCCcccce
Confidence            5433 234567889999999887777666    6899999876443211100                  0012346788


Q ss_pred             EECCCCCEEEEecC------CCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEE-EEecCCCcEEEEEcCC-CCEEE
Q 022716          177 AIDPMGRYFAVGSA------DSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYI-ASASEDLFIDISNVHT-GRTVH  248 (293)
Q Consensus       177 ~~~~~~~~l~~gs~------d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l-~s~s~d~~i~iw~~~~-~~~~~  248 (293)
                      +++|+++++++...      .+.|..+|...++.. .+......+..++|+|+|++| ++.+.++.|.+|+..+ +..+.
T Consensus       141 ~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~  219 (333)
T 2dg1_A          141 VFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVT-PIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQ  219 (333)
T ss_dssp             EECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEE-EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEE
T ss_pred             EECCCCCEEEEeccccccCCCceEEEEeCCCCEEE-EeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcc
Confidence            89999988777654      356777776654332 232333457899999999865 5556788999999864 43322


Q ss_pred             EE------ec--CCCcceeEECCCCCeEEEEEcCCCCCCCC
Q 022716          249 QI------PC--RAAMNSVEWNPKYNLLAYAGDDKNKYQAD  281 (293)
Q Consensus       249 ~~------~~--~~~i~~~~~sp~~~~la~~~~d~~~~~~~  281 (293)
                      .+      ..  ...+..++++++|+++++...++.++.++
T Consensus       220 ~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d  260 (333)
T 2dg1_A          220 PFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFN  260 (333)
T ss_dssp             EEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEEC
T ss_pred             cccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEEC
Confidence            11      11  12567899999999888776665555443

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.58  E-value=1.9e-11  Score=109.23  Aligned_cols=237  Identities=13%  Similarity=0.031  Sum_probs=159.2

Q ss_pred             CCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCC--CCeeeeeeee
Q 022716           30 CTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDAR--SGKCSQQAEL  107 (293)
Q Consensus        30 ~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~--~~~~~~~~~~  107 (293)
                      +.+..+++...+++|.++|.+...  ...  .+.. ...+..+.++|++ ++++.++.|+.|.+||+.  +.+....+..
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t~~--v~~--~i~~-g~~p~~v~~SpDG-r~lyv~~~dg~V~viD~~~~t~~~v~~i~~  238 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGSTYE--IKT--VLDT-GYAVHISRLSASG-RYLFVIGRDGKVNMIDLWMKEPTTVAEIKI  238 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCC--EEE--EEEC-SSCEEEEEECTTS-CEEEEEETTSEEEEEETTSSSCCEEEEEEC
T ss_pred             CCceEEEEeCCCCeEEEEECCCCe--EEE--EEeC-CCCccceEECCCC-CEEEEEcCCCeEEEEECCCCCCcEeEEEec
Confidence            444567788889999999987532  222  2222 2245688999975 577788899999999995  7677776766


Q ss_pred             cCceEEEEEc----CCCCEEEEEeC-CCeEEEEEccccceeeeecccc------------eeeeeEEecCCCEEEEecC-
Q 022716          108 SGENINITYK----PDGTHIAVGNR-DDELTILDVRKFKPIHRRKFGY------------EVNEIAWNMTGEMFFLTTG-  169 (293)
Q Consensus       108 ~~~~~~~~~~----~~~~~l~~~~~-d~~i~l~d~~~~~~~~~~~~~~------------~~~~v~~~~~~~~~~~~~~-  169 (293)
                      ...+..++++    |||++++++.. ++++.++|..+.+++.....+.            .+..+..++.+..+.+... 
T Consensus       239 G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~  318 (567)
T 1qks_A          239 GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE  318 (567)
T ss_dssp             CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred             CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecC
Confidence            6778899999    69999888775 6899999998888776654321            2333444443333222211 


Q ss_pred             ----------------------CCCEEEEEECCCCCEEEEec-CCCcEEEEeCCCCEEEEEeec-cCCC--eeEEE-Ecc
Q 022716          170 ----------------------NAGCYCIAIDPMGRYFAVGS-ADSLVSLWDISEMLCVRTFTK-LEWP--VRTIS-FSH  222 (293)
Q Consensus       170 ----------------------~~~~~~~~~~~~~~~l~~gs-~d~~i~iwd~~~~~~~~~~~~-~~~~--v~~l~-~sp  222 (293)
                                            ......+.|+|++++++++. .+++|.++|+++++.+..+.. -..+  -.... ++|
T Consensus       319 ~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p  398 (567)
T 1qks_A          319 TGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHP  398 (567)
T ss_dssp             TTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEET
T ss_pred             CCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECC
Confidence                                  11234568999999876654 678999999999987766543 1111  12222 578


Q ss_pred             CC-CEEEEec-CCCcEEEEEcCC-------CCEEEEEecCC-CcceeEECCCCCeEEEEE
Q 022716          223 TG-DYIASAS-EDLFIDISNVHT-------GRTVHQIPCRA-AMNSVEWNPKYNLLAYAG  272 (293)
Q Consensus       223 ~~-~~l~s~s-~d~~i~iw~~~~-------~~~~~~~~~~~-~i~~~~~sp~~~~la~~~  272 (293)
                      ++ ...+++. .++.|.++|..+       .+.+..+.... .-.-+..+|++.++-+..
T Consensus       399 ~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~  458 (567)
T 1qks_A          399 TFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDA  458 (567)
T ss_dssp             TTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEEC
T ss_pred             CCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEec
Confidence            74 4455654 568999999988       56777776543 223478899998766654

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.58  E-value=1.2e-12  Score=121.32  Aligned_cols=225  Identities=12%  Similarity=0.071  Sum_probs=140.9

Q ss_pred             CccccEEEEEECCCCCeEEEEeCC-----CcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCC---
Q 022716           18 GHKKKVHSVAWNCTGTKLASGSVD-----QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDK---   89 (293)
Q Consensus        18 ~h~~~v~~l~~s~~~~~l~s~~~d-----g~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~---   89 (293)
                      +|...+..++|||||++||.++.+     .+|++||++...   ......  +...+..++|+|+ . .|+.++.+.   
T Consensus       160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~---~~~~~~--~~~~~~~~~wspD-~-~l~~~~~~~~~~  232 (741)
T 1yr2_A          160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGK---PLADEL--KWVKFSGLAWLGN-D-ALLYSRFAEPKE  232 (741)
T ss_dssp             ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCC---EEEEEE--EEEESCCCEESTT-S-EEEEEECCCC--
T ss_pred             CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCC---CCCccC--CCceeccEEEECC-C-EEEEEEecCccc
Confidence            344578899999999999887654     469999997532   111111  1222356789997 4 445555544   


Q ss_pred             -----------eEEEEeCCCCeee--eeeeecC---ceEEEEEcCCCCEEEEEeCCC-----eEEEEEccccce--eeee
Q 022716           90 -----------TVRLWDARSGKCS--QQAELSG---ENINITYKPDGTHIAVGNRDD-----ELTILDVRKFKP--IHRR  146 (293)
Q Consensus        90 -----------~i~vwd~~~~~~~--~~~~~~~---~~~~~~~~~~~~~l~~~~~d~-----~i~l~d~~~~~~--~~~~  146 (293)
                                 .|.+|++.++...  ..+....   ....+.|+|||++++..+.++     .+.+||+.+...  ....
T Consensus       233 ~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l  312 (741)
T 1yr2_A          233 GQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTAL  312 (741)
T ss_dssp             ------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEE
T ss_pred             ccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEe
Confidence                       3889998776521  2222222   356889999999988877543     889999876411  1111


Q ss_pred             cccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecC----CCcEEEEeCCCC--EEEEEeeccCCCeeEEEE
Q 022716          147 KFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSA----DSLVSLWDISEM--LCVRTFTKLEWPVRTISF  220 (293)
Q Consensus       147 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~----d~~i~iwd~~~~--~~~~~~~~~~~~v~~l~~  220 (293)
                                          .......... ++|+++.|+..+.    ++.|.+||+.++  .....+..+...+..+++
T Consensus       313 --------------------~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~  371 (741)
T 1yr2_A          313 --------------------IPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGI  371 (741)
T ss_dssp             --------------------ECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEE
T ss_pred             --------------------cCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEE
Confidence                                1111111222 2367777776665    345999998874  333334444455667777


Q ss_pred             ccCCCEEEEecCCCcEEEEEcC-CCCEEEEEec--CCCcceeEECCCCCeEEEE
Q 022716          221 SHTGDYIASASEDLFIDISNVH-TGRTVHQIPC--RAAMNSVEWNPKYNLLAYA  271 (293)
Q Consensus       221 sp~~~~l~s~s~d~~i~iw~~~-~~~~~~~~~~--~~~i~~~~~sp~~~~la~~  271 (293)
                      + ++.++++...|+..+||... +++.++.+..  ...+..++++|+++.|+..
T Consensus       372 ~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~  424 (741)
T 1yr2_A          372 A-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLS  424 (741)
T ss_dssp             E-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEE
T ss_pred             E-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEE
Confidence            7 66778888899987777654 4666666543  4567889999998866644

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.56  E-value=4.1e-11  Score=101.90  Aligned_cols=248  Identities=9%  Similarity=-0.059  Sum_probs=153.9

Q ss_pred             EECCCCCeEEEEeC--CC---cEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEe---------CCCeEE
Q 022716           27 AWNCTGTKLASGSV--DQ---TARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATAS---------GDKTVR   92 (293)
Q Consensus        27 ~~s~~~~~l~s~~~--dg---~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~---------~d~~i~   92 (293)
                      ...|+++++.....  .+   +|.++|.....   .. ..++.-..+  .+.++|++..++++..         .++.|.
T Consensus        27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~---~~-~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~  100 (373)
T 2mad_H           27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGS---IL-GHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVE  100 (373)
T ss_pred             cCCCCCCEEEEeCCcccCCccEEEEEECCCCe---EE-EEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEE
Confidence            34578887766653  23   78999987432   11 123222223  7889998654444332         367899


Q ss_pred             EEeCCCCeeeeeeeec--------CceEEEEEcCCCCEEEEEeC--CCeEEEEEccccceeee-ecccceeee-------
Q 022716           93 LWDARSGKCSQQAELS--------GENINITYKPDGTHIAVGNR--DDELTILDVRKFKPIHR-RKFGYEVNE-------  154 (293)
Q Consensus        93 vwd~~~~~~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~--d~~i~l~d~~~~~~~~~-~~~~~~~~~-------  154 (293)
                      ++|..+.+....+...        ..+..++++|||++|+++..  ++.|.++| .+.+.... ...+..+..       
T Consensus       101 viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~~~~~~~~~~~  179 (373)
T 2mad_H          101 VFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTCYHIHPGAPST  179 (373)
T ss_pred             EEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCceEEEEeCCCce
Confidence            9999887766655543        23557899999999998874  57899999 88887766 544322211       


Q ss_pred             -eEEecCCCEEEEecCCCCEE-----------------EEEECCCCCEEEEecCCCcEEEEeCCCCE--EEEEeec----
Q 022716          155 -IAWNMTGEMFFLTTGNAGCY-----------------CIAIDPMGRYFAVGSADSLVSLWDISEML--CVRTFTK----  210 (293)
Q Consensus       155 -v~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~l~~gs~d~~i~iwd~~~~~--~~~~~~~----  210 (293)
                       +...+++....+.. .....                 ...+.+++..++..+.++.+.+.|+....  .+..+.-    
T Consensus       180 ~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~  258 (373)
T 2mad_H          180 FYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGG  258 (373)
T ss_pred             EEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCc
Confidence             12223444333333 22211                 11233444444444467889999986542  2222211    


Q ss_pred             ---c---CCCeeEEEEccCCCEEEEecC----------CCcEEEEEcCCCCEEEEEecCCCcceeEECCCCC-eEEEEE-
Q 022716          211 ---L---EWPVRTISFSHTGDYIASASE----------DLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYN-LLAYAG-  272 (293)
Q Consensus       211 ---~---~~~v~~l~~sp~~~~l~s~s~----------d~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~-~la~~~-  272 (293)
                         .   ......+.++|+++.+..+..          .+.|.+.|..+++.+..++.......++|+|+++ ++.++. 
T Consensus       259 ~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~  338 (373)
T 2mad_H          259 RKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSA  338 (373)
T ss_pred             ccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEcC
Confidence               0   122444889999988766543          3579999999999999888777789999999999 666665 


Q ss_pred             cCCCCCCCCc
Q 022716          273 DDKNKYQADE  282 (293)
Q Consensus       273 ~d~~~~~~~~  282 (293)
                      .++.+.+.|.
T Consensus       339 ~~~~V~ViD~  348 (373)
T 2mad_H          339 GTEVLHIYDA  348 (373)
T ss_pred             CCCeEEEEEC
Confidence            3555554443

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.54  E-value=2.8e-12  Score=105.41  Aligned_cols=205  Identities=11%  Similarity=0.057  Sum_probs=134.4

Q ss_pred             ceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEE--eeC-CcCCeeEEEEcCCCCCEEEEE----
Q 022716           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIE--LRG-HADSVDQLCWDPKHADLIATA----   85 (293)
Q Consensus        13 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~--~~~-h~~~i~~~~~~~~~~~~l~s~----   85 (293)
                      .+.+..+...+.+++++++|+.+++...++.|.+||.....   ...+.  ..+ ....+..+++.|++ .++++.    
T Consensus        61 ~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~---~~~~~~~~~~~~~~~~~~i~~d~~G-~l~vtd~~~g  136 (296)
T 3e5z_A           61 LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGE---WESIADSFEGKKLNSPNDVCLAPDG-SLWFSDPTYG  136 (296)
T ss_dssp             EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCC---EEEEECEETTEECCCCCCEEECTTS-CEEEEECSHH
T ss_pred             eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCc---EEEEeeccCCCCCCCCCCEEECCCC-CEEEECCccc
Confidence            34455667789999999999988877778999999985432   21111  111 12346678899864 677763    


Q ss_pred             e-------------CCCeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEcc-ccce-eeeecccc
Q 022716           86 S-------------GDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVR-KFKP-IHRRKFGY  150 (293)
Q Consensus        86 ~-------------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~-~~~~-~~~~~~~~  150 (293)
                      +             ..+.|..++.. ++..........+..++|+|+++.+++.+.++.|.+||+. +... ....    
T Consensus       137 ~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~----  211 (296)
T 3e5z_A          137 IDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGV----  211 (296)
T ss_dssp             HHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEE----
T ss_pred             cccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCe----
Confidence            2             13455556654 4433332333456789999999999777778999999986 2221 1000    


Q ss_pred             eeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEE-ccCCCEEEE
Q 022716          151 EVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISF-SHTGDYIAS  229 (293)
Q Consensus       151 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~-sp~~~~l~s  229 (293)
                                   .+ ......+..++++++|+++++.  ++.|.+||.+ ++.+..+..+.. +.+++| +|+++.|+.
T Consensus       212 -------------~~-~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~d~~~L~v  273 (296)
T 3e5z_A          212 -------------HF-TVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQT-TSNLCFGGPEGRTLYM  273 (296)
T ss_dssp             -------------EE-CCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECSSC-CCEEEEESTTSCEEEE
T ss_pred             -------------Ee-eCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECCCC-ceeEEEECCCCCEEEE
Confidence                         00 1122234468889999977766  7889999986 666667766666 899999 589998888


Q ss_pred             ecCCCcEEEEEcCCCC
Q 022716          230 ASEDLFIDISNVHTGR  245 (293)
Q Consensus       230 ~s~d~~i~iw~~~~~~  245 (293)
                      ++.++ +..++..+.+
T Consensus       274 ~t~~~-l~~~~~~~~~  288 (296)
T 3e5z_A          274 TVSTE-FWSIETNVRG  288 (296)
T ss_dssp             EETTE-EEEEECSCCB
T ss_pred             EcCCe-EEEEEccccc
Confidence            88764 4444555443

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.54  E-value=2.2e-12  Score=105.20  Aligned_cols=189  Identities=11%  Similarity=0.062  Sum_probs=140.3

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCeeeeeeeecC--ceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeE
Q 022716           79 ADLIATASGDKTVRLWDARSGKCSQQAELSG--ENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIA  156 (293)
Q Consensus        79 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~  156 (293)
                      .++|++++.|+.|.+||.++++.+..+..+.  .+..+.+.|+|+.++  +.++.+..+|. +.+.+.....+       
T Consensus         5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~-------   74 (276)
T 3no2_A            5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAP-------   74 (276)
T ss_dssp             CEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECC-------
T ss_pred             CcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCC-------
Confidence            3689999999999999999999887777654  567889999999888  45788999987 44433322211       


Q ss_pred             EecCCCEEEEecCCCCEEEEEECCCCCEEEEecC-CCcEEEEeCCCCEEEEEee------ccCCCeeEEEEccCCCEEEE
Q 022716          157 WNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSA-DSLVSLWDISEMLCVRTFT------KLEWPVRTISFSHTGDYIAS  229 (293)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~-d~~i~iwd~~~~~~~~~~~------~~~~~v~~l~~sp~~~~l~s  229 (293)
                                  ....+.++.+.|+|+++++.+. ++.|..+|. +++.+.++.      .+..+...+++.++|+++++
T Consensus        75 ------------~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~  141 (276)
T 3no2_A           75 ------------AGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVP  141 (276)
T ss_dssp             ------------TTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEE
T ss_pred             ------------CCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEE
Confidence                        1123456778899999998877 778888886 565555543      12234566788999999999


Q ss_pred             ecCCCcEEEEEcCCCCEEEEEecCCCcceeEECCCCCeEEEEEcCCCCCCCCcceE-EEEeee
Q 022716          230 ASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVF-RIYGFE  291 (293)
Q Consensus       230 ~s~d~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~-~~~~~~  291 (293)
                      ...++.|..||.. |+.+.++.......++...|+++++++++.++.++.++..+. -+|.+.
T Consensus       142 ~~~~~~v~~~d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~  203 (276)
T 3no2_A          142 LFATSEVREIAPN-GQLLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVN  203 (276)
T ss_dssp             ETTTTEEEEECTT-SCEEEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEE
T ss_pred             ecCCCEEEEECCC-CCEEEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEec
Confidence            9999999999998 999988877667778889999999988877655555544322 345553

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.54  E-value=4.2e-12  Score=117.08  Aligned_cols=227  Identities=7%  Similarity=-0.051  Sum_probs=142.3

Q ss_pred             CCCCeEEEEeCCC-c--EEEeecCCCCCCceeEEE----eeCCcCCeeEEEEcCCCCCEEEEEeCCC----eEEEEeCCC
Q 022716           30 CTGTKLASGSVDQ-T--ARVWHIEPHGHGKVKDIE----LRGHADSVDQLCWDPKHADLIATASGDK----TVRLWDARS   98 (293)
Q Consensus        30 ~~~~~l~s~~~dg-~--v~iw~~~~~~~~~~~~~~----~~~h~~~i~~~~~~~~~~~~l~s~~~d~----~i~vwd~~~   98 (293)
                      |+|++++....++ .  -.+|-.+.........+.    -.+|...+..++|+|++..++++.+..|    .|++||+.+
T Consensus        81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t  160 (710)
T 2xdw_A           81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG  160 (710)
T ss_dssp             EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred             EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence            8899887554432 2  245654321111111110    0134446788999998654444443333    899999999


Q ss_pred             CeeeeeeeecCceEEEEEcCCCCEEEEEeCCCe----------------EEEEEccccceeeeecccceeeeeEEecCCC
Q 022716           99 GKCSQQAELSGENINITYKPDGTHIAVGNRDDE----------------LTILDVRKFKPIHRRKFGYEVNEIAWNMTGE  162 (293)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~----------------i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~  162 (293)
                      ++..........+..++|+|||+.|+.++.++.                |.+|++.+......                 
T Consensus       161 g~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~-----------------  223 (710)
T 2xdw_A          161 AKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDI-----------------  223 (710)
T ss_dssp             TEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCE-----------------
T ss_pred             CCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccce-----------------
Confidence            987653322333457899999999999987765                88888865432111                 


Q ss_pred             EEEEec--CCCCEEEEEECCCCCEEEEecC-----CCcEEEEeCCC------CE-EEEEeeccCCCeeEEEEccCCCEEE
Q 022716          163 MFFLTT--GNAGCYCIAIDPMGRYFAVGSA-----DSLVSLWDISE------ML-CVRTFTKLEWPVRTISFSHTGDYIA  228 (293)
Q Consensus       163 ~~~~~~--~~~~~~~~~~~~~~~~l~~gs~-----d~~i~iwd~~~------~~-~~~~~~~~~~~v~~l~~sp~~~~l~  228 (293)
                       .....  +......++++|++++|+.++.     +..|.+||+.+      +. ....+..+...+.. .|+|+|+.|+
T Consensus       224 -~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~  301 (710)
T 2xdw_A          224 -LCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFT  301 (710)
T ss_dssp             -EEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEE
T ss_pred             -EEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEE
Confidence             11111  1223567889999999887764     57899999875      32 34455566555554 4889998877


Q ss_pred             EecCC----CcEEEEEcCCCCE--EEE-EecCC--CcceeEECCCCCeEEEEEcCC
Q 022716          229 SASED----LFIDISNVHTGRT--VHQ-IPCRA--AMNSVEWNPKYNLLAYAGDDK  275 (293)
Q Consensus       229 s~s~d----~~i~iw~~~~~~~--~~~-~~~~~--~i~~~~~sp~~~~la~~~~d~  275 (293)
                      ..+.+    ..|.+|++.++..  ... +....  .+..++|++++.+++++..++
T Consensus       302 ~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g  357 (710)
T 2xdw_A          302 FKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDV  357 (710)
T ss_dssp             EEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETT
T ss_pred             EEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECC
Confidence            66543    3599999987642  223 33332  577899998777777777664

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.53  E-value=1.1e-12  Score=111.91  Aligned_cols=203  Identities=13%  Similarity=0.021  Sum_probs=127.9

Q ss_pred             eeEEEEcCCCCCEEEEEeCC--CeEEEEeCCCCeeeeeeeecCceEE-EEEcCCCCEEEEEeCCCeEEEEEccccceeee
Q 022716           69 VDQLCWDPKHADLIATASGD--KTVRLWDARSGKCSQQAELSGENIN-ITYKPDGTHIAVGNRDDELTILDVRKFKPIHR  145 (293)
Q Consensus        69 i~~~~~~~~~~~~l~s~~~d--~~i~vwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~  145 (293)
                      +..++|+|++..++++...+  ..+.+||+.+++............. +.|+|||+.|+..+.++.+.+||+.+.+....
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~  117 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVI  117 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEE
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEE
Confidence            66778999865444444333  4688889988875544333333232 78999999999999999999999877654332


Q ss_pred             ecccc----e----------------------------------------eeeeEEecC-CCEEEEecCCCCEEEEEECC
Q 022716          146 RKFGY----E----------------------------------------VNEIAWNMT-GEMFFLTTGNAGCYCIAIDP  180 (293)
Q Consensus       146 ~~~~~----~----------------------------------------~~~v~~~~~-~~~~~~~~~~~~~~~~~~~~  180 (293)
                      .....    .                                        .....|+.. ++...+..+...+..+.|+|
T Consensus       118 ~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp  197 (396)
T 3c5m_A          118 YTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYRP  197 (396)
T ss_dssp             EECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEEET
T ss_pred             EecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccceECC
Confidence            22110    0                                        011122221 12222223344567789999


Q ss_pred             -CCCEEEEecCC------CcEEEEeCCCCEEEEEeecc--CCCeeEEEEccCCCEEEEecCC-----CcEEEEEcCCCCE
Q 022716          181 -MGRYFAVGSAD------SLVSLWDISEMLCVRTFTKL--EWPVRTISFSHTGDYIASASED-----LFIDISNVHTGRT  246 (293)
Q Consensus       181 -~~~~l~~gs~d------~~i~iwd~~~~~~~~~~~~~--~~~v~~l~~sp~~~~l~s~s~d-----~~i~iw~~~~~~~  246 (293)
                       +++.++..+.+      ..|.+||+..+... .+..+  ...+..++|+|+|++|+.++.+     +.|++||+.+++.
T Consensus       198 ~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~  276 (396)
T 3c5m_A          198 FDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLEN  276 (396)
T ss_dssp             TEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCE
T ss_pred             CCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCe
Confidence             78876665543      46888998765432 33332  2357889999999988777543     4499999988875


Q ss_pred             EEEEecCCCcceeEECC-CCCeEEEEEcC
Q 022716          247 VHQIPCRAAMNSVEWNP-KYNLLAYAGDD  274 (293)
Q Consensus       247 ~~~~~~~~~i~~~~~sp-~~~~la~~~~d  274 (293)
                      ....... ... +.|+| +++++++++.+
T Consensus       277 ~~l~~~~-~~~-~~~s~~dg~~l~~~~~~  303 (396)
T 3c5m_A          277 EEVMVMP-PCS-HLMSNFDGSLMVGDGCD  303 (396)
T ss_dssp             EEEEECC-SEE-EEEECSSSSEEEEEECC
T ss_pred             EEeeeCC-CCC-CCccCCCCceEEEecCC
Confidence            4332222 233 89999 99998887643

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.53  E-value=2.6e-10  Score=93.26  Aligned_cols=243  Identities=10%  Similarity=0.013  Sum_probs=163.0

Q ss_pred             CccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCC
Q 022716           18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDAR   97 (293)
Q Consensus        18 ~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~   97 (293)
                      .....+.+++++++|+..++...++.|.+|+.. .   ......+..+...+..+.+.+++ .++++...++.|..+|..
T Consensus        17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~---~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~v~~~d~~   91 (300)
T 2qc5_A           17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-G---RIKEFEVPTPDAKVMCLIVSSLG-DIWFTENGANKIGKLSKK   91 (300)
T ss_dssp             STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S---CEEEEECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECTT
T ss_pred             CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-C---ceEEEECCCCCCcceeEEECCCC-CEEEEecCCCeEEEECCC
Confidence            345688999999999988877778999999875 2   22223333444668888888764 577766668899999987


Q ss_pred             CCeeeeeeee---cCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEE
Q 022716           98 SGKCSQQAEL---SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCY  174 (293)
Q Consensus        98 ~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  174 (293)
                       ++.. .+..   ...+..+++.++|+.+++...++.+..+|.. .+... ...                  ......+.
T Consensus        92 -g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~-~~~------------------~~~~~~~~  149 (300)
T 2qc5_A           92 -GGFT-EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYE-YDL------------------PNKGSYPA  149 (300)
T ss_dssp             -SCEE-EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEE-EEC------------------SSTTCCEE
T ss_pred             -CCeE-EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEE-ccC------------------CCCCCCce
Confidence             5443 2222   2456788999999887777668889888875 22111 000                  11223567


Q ss_pred             EEEECCCCCEEEEecCCCcEEEEeCCCCEEEE-EeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEE-Ee-
Q 022716          175 CIAIDPMGRYFAVGSADSLVSLWDISEMLCVR-TFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQ-IP-  251 (293)
Q Consensus       175 ~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~-~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~-~~-  251 (293)
                      .++++++++.+++...++.|..+|. ++.... ........+..+++.++|+..++....+.|.+++. +++.... .+ 
T Consensus       150 ~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~  227 (300)
T 2qc5_A          150 FITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPT  227 (300)
T ss_dssp             EEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSS
T ss_pred             eEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCC
Confidence            8899999998777777889999998 443332 12223356889999999988887777888999998 5554332 22 


Q ss_pred             cCCCcceeEECCCCCeEEEEEcCCCCCCCC-cceEEEEe
Q 022716          252 CRAAMNSVEWNPKYNLLAYAGDDKNKYQAD-EGVFRIYG  289 (293)
Q Consensus       252 ~~~~i~~~~~sp~~~~la~~~~d~~~~~~~-~~~~~~~~  289 (293)
                      ....+..++++|+++++++...++.+...+ .+.++.|.
T Consensus       228 ~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~~~~~  266 (300)
T 2qc5_A          228 PNARPHAITAGKNSEIWFTEWGANQIGRITNDNTIQEYQ  266 (300)
T ss_dssp             TTCCEEEEEECSTTCEEEEETTTTEEEEECTTSCEEEEE
T ss_pred             CCCCceEEEECCCCCEEEeccCCCeEEEECCCCcEEEEE
Confidence            234567899999998766664444444433 34444443

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.53  E-value=5.4e-11  Score=97.93  Aligned_cols=227  Identities=11%  Similarity=0.037  Sum_probs=148.0

Q ss_pred             cccEEEEEECCCCC-eEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCC
Q 022716           20 KKKVHSVAWNCTGT-KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS   98 (293)
Q Consensus        20 ~~~v~~l~~s~~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~   98 (293)
                      ..-.-+..|++++. .+++...++.|..||....   .....   .....+.++++.+++ .++++ . +..|.+||..+
T Consensus        12 ~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~---~~~~~---~~~~~~~~i~~~~dG-~l~v~-~-~~~l~~~d~~~   82 (297)
T 3g4e_A           12 CRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTK---QVQRV---TMDAPVSSVALRQSG-GYVAT-I-GTKFCALNWKE   82 (297)
T ss_dssp             CSBEEEEEEETTTTEEEEEETTTTEEEEEETTTC---CEEEE---ECSSCEEEEEEBTTS-SEEEE-E-TTEEEEEETTT
T ss_pred             CccccCCeEECCCCEEEEEECCCCEEEEEECCCC---cEEEE---eCCCceEEEEECCCC-CEEEE-E-CCeEEEEECCC
Confidence            34566889999655 5566667899999998643   22211   234568899999875 46554 3 56899999988


Q ss_pred             Ceeeeeeeec-----CceEEEEEcCCCCEEEEEeCC---------CeEEEEEccccceeeeecccceeeeeEEecCCCEE
Q 022716           99 GKCSQQAELS-----GENINITYKPDGTHIAVGNRD---------DELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMF  164 (293)
Q Consensus        99 ~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~d---------~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~  164 (293)
                      ++........     ..+..+++.|+|+.+++....         ..-.+|.+...                    +...
T Consensus        83 g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~--------------------g~~~  142 (297)
T 3g4e_A           83 QSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD--------------------HHVK  142 (297)
T ss_dssp             TEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT--------------------SCEE
T ss_pred             CcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC--------------------CCEE
Confidence            7654333221     224568899999966654322         12233333211                    1111


Q ss_pred             EEecCCCCEEEEEECCCCCEE-EEecCCCcEEEEeC--CCCEE-----EEEeeccCCCeeEEEEccCCCEEEEecCCCcE
Q 022716          165 FLTTGNAGCYCIAIDPMGRYF-AVGSADSLVSLWDI--SEMLC-----VRTFTKLEWPVRTISFSHTGDYIASASEDLFI  236 (293)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~l-~~gs~d~~i~iwd~--~~~~~-----~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i  236 (293)
                      .+...-.....++++|+++.+ ++.+.++.|..|++  .++..     ...+......+..+++.++|++.++...++.|
T Consensus       143 ~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v  222 (297)
T 3g4e_A          143 KYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRV  222 (297)
T ss_dssp             EEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEE
T ss_pred             EEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEE
Confidence            111111234568899999865 56667889999987  44432     12222333567899999999988888888899


Q ss_pred             EEEEcCCCCEEEEEecC-CCcceeEEC-CCCCeEEEEEcCC
Q 022716          237 DISNVHTGRTVHQIPCR-AAMNSVEWN-PKYNLLAYAGDDK  275 (293)
Q Consensus       237 ~iw~~~~~~~~~~~~~~-~~i~~~~~s-p~~~~la~~~~d~  275 (293)
                      .+||..+++.+..+... ..+++++|. |+++.|..++...
T Consensus       223 ~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~~~  263 (297)
T 3g4e_A          223 IRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCARD  263 (297)
T ss_dssp             EEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEEBCT
T ss_pred             EEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEcCCc
Confidence            99999999988877654 468999998 8887766665543

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.52  E-value=6.5e-12  Score=105.02  Aligned_cols=212  Identities=8%  Similarity=-0.039  Sum_probs=143.3

Q ss_pred             CCCcEEEeecCCCCCCceeEEEee---C--CcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeeeecCceEEE
Q 022716           40 VDQTARVWHIEPHGHGKVKDIELR---G--HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI  114 (293)
Q Consensus        40 ~dg~v~iw~~~~~~~~~~~~~~~~---~--h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~  114 (293)
                      .++.|.++|.+...   .....+.   +  .-.....+.+.  +..++++...++.|.+||..+++.+..+.....+..+
T Consensus        15 ~~~~l~~~d~~t~~---~~~~i~~~~n~~~lg~~~~~i~~~--~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~i   89 (328)
T 3dsm_A           15 SNATLSYYDPATCE---VENEVFYRANGFKLGDVAQSMVIR--DGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYI   89 (328)
T ss_dssp             CCBEEEEEETTTTE---EECSHHHHHHSSCCBSCEEEEEEE--TTEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEEE
T ss_pred             CCceEEEEECCCCE---EhhhhHhhhcCcccCccceEEEEE--CCEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcEE
Confidence            38899999987431   1100000   0  11234566664  3456777777899999999999887777656678889


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEec-CCCc
Q 022716          115 TYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGS-ADSL  193 (293)
Q Consensus       115 ~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs-~d~~  193 (293)
                      +++++++.+++...++.|.++|+++.+.......+...               ........+++ .+++.+++.. .++.
T Consensus        90 ~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~---------------~~~~~p~~i~~-~~~~lyv~~~~~~~~  153 (328)
T 3dsm_A           90 HFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMD---------------MESGSTEQMVQ-YGKYVYVNCWSYQNR  153 (328)
T ss_dssp             EEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCC---------------TTTCBCCCEEE-ETTEEEEEECTTCCE
T ss_pred             EEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCcc---------------ccCCCcceEEE-ECCEEEEEcCCCCCE
Confidence            99899854444447899999999887655443322100               00001123444 3444455544 4889


Q ss_pred             EEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCC----------CcEEEEEcCCCCEEEEEec--CCCcceeEE
Q 022716          194 VSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASED----------LFIDISNVHTGRTVHQIPC--RAAMNSVEW  261 (293)
Q Consensus       194 i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d----------~~i~iw~~~~~~~~~~~~~--~~~i~~~~~  261 (293)
                      |.++|+++++.+..+.. ......++++|+|++++++..+          +.|.++|..+++....+..  ....+.++|
T Consensus       154 v~viD~~t~~~~~~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~  232 (328)
T 3dsm_A          154 ILKIDTETDKVVDELTI-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQL  232 (328)
T ss_dssp             EEEEETTTTEEEEEEEC-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEE
T ss_pred             EEEEECCCCeEEEEEEc-CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEE
Confidence            99999999987777654 3356789999999988887665          7899999999887766654  346889999


Q ss_pred             CCCCCeEEEEEc
Q 022716          262 NPKYNLLAYAGD  273 (293)
Q Consensus       262 sp~~~~la~~~~  273 (293)
                      +|+++.|.++..
T Consensus       233 ~~d~~~lyv~~~  244 (328)
T 3dsm_A          233 NGTRDTLYWINN  244 (328)
T ss_dssp             CTTSCEEEEESS
T ss_pred             ecCCCEEEEEcc
Confidence            999988777643

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.52  E-value=1.9e-10  Score=94.10  Aligned_cols=224  Identities=11%  Similarity=0.025  Sum_probs=154.2

Q ss_pred             ccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCC
Q 022716           19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS   98 (293)
Q Consensus        19 h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~   98 (293)
                      +...+.+++++++|...++...++.|..|+.+    .......+......+..+.+.++ +.++++...++.|.+||. +
T Consensus        55 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~----g~~~~~~~~~~~~~~~~i~~~~~-g~l~v~~~~~~~i~~~d~-~  128 (299)
T 2z2n_A           55 PDAKVMCLTISSDGEVWFTENAANKIGRITKK----GIIKEYTLPNPDSAPYGITEGPN-GDIWFTEMNGNRIGRITD-D  128 (299)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTT----SCEEEEECSSTTCCEEEEEECTT-SCEEEEETTTTEEEEECT-T
T ss_pred             ccCceeeEEECCCCCEEEeCCCCCeEEEECCC----CcEEEEeCCCcCCCceeeEECCC-CCEEEEecCCceEEEECC-C
Confidence            34679999999999988887778899999865    12222333334456888999876 467777777889999998 5


Q ss_pred             Ceeeeee-e-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEE
Q 022716           99 GKCSQQA-E-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCI  176 (293)
Q Consensus        99 ~~~~~~~-~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  176 (293)
                      ++..... . ....+..+++.++|+.+++...++.+..+|. +.+... ..                  .......+..+
T Consensus       129 g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~------------------~~~~~~~~~~i  188 (299)
T 2z2n_A          129 GKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITE-FK------------------IPTPASGPVGI  188 (299)
T ss_dssp             CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEE-EE------------------CSSTTCCEEEE
T ss_pred             CCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEE-ee------------------CCCCCCcceeE
Confidence            4433221 1 1234678899999987777766789999987 332211 00                  01122346688


Q ss_pred             EECCCCCEEEEecCCCcEEEEeCCCCEEEE-EeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEec---
Q 022716          177 AIDPMGRYFAVGSADSLVSLWDISEMLCVR-TFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPC---  252 (293)
Q Consensus       177 ~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~-~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~---  252 (293)
                      +++++++++++...++.|..||. ++.... ........+.++++.++|+..++...++.|..++. +++ +..+..   
T Consensus       189 ~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~-~~~~~~~~~  265 (299)
T 2z2n_A          189 TKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNI-IEEYPIQIK  265 (299)
T ss_dssp             EECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTE-EEEEECSSS
T ss_pred             EECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCc-eEEEeCCCC
Confidence            99999998888777889999998 554322 12223457899999999997777777889999998 443 334322   


Q ss_pred             CCCcceeEECCCCCeEEEEE
Q 022716          253 RAAMNSVEWNPKYNLLAYAG  272 (293)
Q Consensus       253 ~~~i~~~~~sp~~~~la~~~  272 (293)
                      ...+.++.+ ++++++++.+
T Consensus       266 ~~~~~~i~~-~~g~l~v~~~  284 (299)
T 2z2n_A          266 SAEPHGICF-DGETIWFAME  284 (299)
T ss_dssp             SCCEEEEEE-CSSCEEEEET
T ss_pred             CCccceEEe-cCCCEEEEec
Confidence            245778889 8888777654

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.51  E-value=9.7e-11  Score=104.70  Aligned_cols=249  Identities=11%  Similarity=0.063  Sum_probs=162.4

Q ss_pred             ccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEc----CCCCCEEEEEeCCCeEEEEeC
Q 022716           21 KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWD----PKHADLIATASGDKTVRLWDA   96 (293)
Q Consensus        21 ~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~----~~~~~~l~s~~~d~~i~vwd~   96 (293)
                      ..++.+.|+|||+++.+++.|+.|.+||+.........  .+.... ....+.++    |++..++++.-.++.+.++|.
T Consensus       197 ~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~--~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~  273 (567)
T 1qks_A          197 YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVA--EIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDG  273 (567)
T ss_dssp             SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEE--EEECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEET
T ss_pred             CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeE--EEecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEEC
Confidence            36789999999999999999999999998511112222  222222 24678898    575545555555799999999


Q ss_pred             CCCeeeeeeeecC------------ceEEEEEcCCCCEEEEE-eCCCeEEEEEccccceeee--ecccceeeeeEEecCC
Q 022716           97 RSGKCSQQAELSG------------ENINITYKPDGTHIAVG-NRDDELTILDVRKFKPIHR--RKFGYEVNEIAWNMTG  161 (293)
Q Consensus        97 ~~~~~~~~~~~~~------------~~~~~~~~~~~~~l~~~-~~d~~i~l~d~~~~~~~~~--~~~~~~~~~v~~~~~~  161 (293)
                      .+.+.+..+...+            .+..+..++++..++.. ..+|++.++|.........  ...+.....+.|++++
T Consensus       274 ~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdg  353 (567)
T 1qks_A          274 ETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSH  353 (567)
T ss_dssp             TTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTS
T ss_pred             CCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCC
Confidence            8888776654321            34567778876655444 4569999999876533222  2223345567788888


Q ss_pred             CEEEEecCCCC-E-------------------------EEEEECCCCC-EEEEec-CCCcEEEEeCCC-------CEEEE
Q 022716          162 EMFFLTTGNAG-C-------------------------YCIAIDPMGR-YFAVGS-ADSLVSLWDISE-------MLCVR  206 (293)
Q Consensus       162 ~~~~~~~~~~~-~-------------------------~~~~~~~~~~-~l~~gs-~d~~i~iwd~~~-------~~~~~  206 (293)
                      +.++++..... +                         ..-.++|++. .++++. .+++|.++|..+       .+.++
T Consensus       354 r~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~  433 (567)
T 1qks_A          354 RYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILD  433 (567)
T ss_dssp             CEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEE
T ss_pred             CEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEE
Confidence            87665442210 0                         0011467644 445543 468999999987       66777


Q ss_pred             EeeccCCCeeEEEEccCCCEEEEecC-------CCcEEEEEcCCC-----CE-EEEEec---------CCCcceeEECCC
Q 022716          207 TFTKLEWPVRTISFSHTGDYIASASE-------DLFIDISNVHTG-----RT-VHQIPC---------RAAMNSVEWNPK  264 (293)
Q Consensus       207 ~~~~~~~~v~~l~~sp~~~~l~s~s~-------d~~i~iw~~~~~-----~~-~~~~~~---------~~~i~~~~~sp~  264 (293)
                      ++......-.-+.++|++++|.....       ...|.++|..+.     .. ...++-         ...+..++|+|+
T Consensus       434 ~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  513 (567)
T 1qks_A          434 SFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKD  513 (567)
T ss_dssp             EEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTT
T ss_pred             EEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCC
Confidence            77654434455778999999877653       358999999876     22 233321         345788999999


Q ss_pred             CCeEEEEE
Q 022716          265 YNLLAYAG  272 (293)
Q Consensus       265 ~~~la~~~  272 (293)
                      |..+-++.
T Consensus       514 G~~~~~s~  521 (567)
T 1qks_A          514 GTEVWFSV  521 (567)
T ss_dssp             SSEEEEEE
T ss_pred             CCEEEEEe
Confidence            98766653

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.51  E-value=7.1e-11  Score=101.69  Aligned_cols=239  Identities=11%  Similarity=0.083  Sum_probs=152.5

Q ss_pred             ccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCC--eEEEEeCCC
Q 022716           21 KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDK--TVRLWDARS   98 (293)
Q Consensus        21 ~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~--~i~vwd~~~   98 (293)
                      .....++|+++|+.+++...++.|++||.+..   ..... .... .... ++|++++ +.|+.+..++  .|.+++...
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g---~~~~~-~~~~-~~~~-ia~~~~g-~~l~~~d~~~~~~I~~~d~~~  203 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDN---KVTTV-HPGF-KGGK-PAVTKDK-QRVYSIGWEGTHTVYVYMKAS  203 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTT---EEEEE-EETC-CBCB-CEECTTS-SEEEEEBSSTTCEEEEEEGGG
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCC---EEEEe-eccC-CCCc-eeEecCC-CcEEEEecCCCceEEEEEcCC
Confidence            46889999999997788877899999998642   22222 2222 2233 7888875 4666777655  788888765


Q ss_pred             Ceeeeee----e-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCE
Q 022716           99 GKCSQQA----E-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGC  173 (293)
Q Consensus        99 ~~~~~~~----~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  173 (293)
                      +......    . ....+..++++|++..|+++..+++|..||+.+.........+         ..+      ......
T Consensus       204 ~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~---------~~g------~~~~~P  268 (409)
T 3hrp_A          204 GWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLE---------LSG------SLGTNP  268 (409)
T ss_dssp             TTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECC---------CCS------CCCCSS
T ss_pred             CceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEeccc---------ccC------CCCCCc
Confidence            5432222    1 2344567899996556666777889999998754321110000         000      000011


Q ss_pred             E-EEEECCC-CCEEEEecCCCcEEEEeCCCCEEEEEeeccC---------------CCeeEEEEccCCCEEEEec-CCCc
Q 022716          174 Y-CIAIDPM-GRYFAVGSADSLVSLWDISEMLCVRTFTKLE---------------WPVRTISFSHTGDYIASAS-EDLF  235 (293)
Q Consensus       174 ~-~~~~~~~-~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~---------------~~v~~l~~sp~~~~l~s~s-~d~~  235 (293)
                      . .++++|+ +.++++-..++.|+.|+....  +..+.+..               .....++++|+|++.++-+ .+..
T Consensus       269 ~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~  346 (409)
T 3hrp_A          269 GPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYC  346 (409)
T ss_dssp             CCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCE
T ss_pred             cccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCE
Confidence            2 6888894 667777777889999987654  23333322               3478999999999888888 8999


Q ss_pred             EEEEEcCCCCEEEEEec---------------CCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeee
Q 022716          236 IDISNVHTGRTVHQIPC---------------RAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE  291 (293)
Q Consensus       236 i~iw~~~~~~~~~~~~~---------------~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~  291 (293)
                      |+.|+..++........               -.....|+++|+++++++-..+        ..+|.+.+|
T Consensus       347 I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n--------~~Ir~i~~e  409 (409)
T 3hrp_A          347 LRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWG--------KAIRKYAVE  409 (409)
T ss_dssp             EEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTT--------CEEEEEEEC
T ss_pred             EEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCC--------CeEEEEEeC
Confidence            99999877764333322               0235678999987665554432        456666665

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.48  E-value=2.4e-11  Score=104.39  Aligned_cols=247  Identities=9%  Similarity=-0.018  Sum_probs=164.5

Q ss_pred             CCCCeEEEEeC-C----CcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEe---------CCCeEEEEe
Q 022716           30 CTGTKLASGSV-D----QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATAS---------GDKTVRLWD   95 (293)
Q Consensus        30 ~~~~~l~s~~~-d----g~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~---------~d~~i~vwd   95 (293)
                      ++++++..+.. +    +.|.+.|.....  ....+.. +. .+  .+.++|++..++++-.         .++.|.++|
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~--vv~~I~v-G~-~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD  155 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGR--ILGMTDG-GF-LP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFD  155 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTE--EEEEEEE-CS-SC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCE--EEEEEEC-CC-CC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEE
Confidence            46666654444 3    699999987532  2222222 22 33  7889998766665542         467899999


Q ss_pred             CCCCeeeeeeeec--------CceEEEEEcCCCCEEEEEeC--CCeEEEEEccccceeeeecccce--------eeeeEE
Q 022716           96 ARSGKCSQQAELS--------GENINITYKPDGTHIAVGNR--DDELTILDVRKFKPIHRRKFGYE--------VNEIAW  157 (293)
Q Consensus        96 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~--d~~i~l~d~~~~~~~~~~~~~~~--------~~~v~~  157 (293)
                      ..+.+....+...        ..+..++++|||++++++..  ++.|.+.|+.+.+.+.....+..        ...+..
T Consensus       156 ~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~  235 (426)
T 3c75_H          156 PVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMN  235 (426)
T ss_dssp             TTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEE
T ss_pred             CCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEE
Confidence            9999887776654        23557899999999999874  57999999999887776654321        111445


Q ss_pred             ecCCCEEEEecCCCCEE----------------EEEECCCCCEEEEecCCCcEEEEeCCCCEEE--EEeec-------c-
Q 022716          158 NMTGEMFFLTTGNAGCY----------------CIAIDPMGRYFAVGSADSLVSLWDISEMLCV--RTFTK-------L-  211 (293)
Q Consensus       158 ~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~--~~~~~-------~-  211 (293)
                      ++++....+......+.                .+.+.+++..++..+..+.+.+.|.......  ..+..       . 
T Consensus       236 ~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g  315 (426)
T 3c75_H          236 CRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADD  315 (426)
T ss_dssp             ETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGT
T ss_pred             cCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccc
Confidence            66676666555332222                1345778877777777889999998654311  11110       0 


Q ss_pred             --CCCeeEEEEccCCCEEEEecC----------CCcEEEEEcCCCCEEEEEecCCCcceeEECCCCC-eEEEEEc-CCCC
Q 022716          212 --EWPVRTISFSHTGDYIASASE----------DLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYN-LLAYAGD-DKNK  277 (293)
Q Consensus       212 --~~~v~~l~~sp~~~~l~s~s~----------d~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~-~la~~~~-d~~~  277 (293)
                        ......++++|+++.++....          ++.|.+.|..+.+.+..++.......++|+|+++ ++.++.. ++.+
T Consensus       316 ~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~s~~V  395 (426)
T 3c75_H          316 WRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYALSAGTQTL  395 (426)
T ss_dssp             EEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEE
T ss_pred             cccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEcCCCCeE
Confidence              112233789999887655532          3579999999999999887666788999999998 7777773 5544


Q ss_pred             CCCCc
Q 022716          278 YQADE  282 (293)
Q Consensus       278 ~~~~~  282 (293)
                      .+.|.
T Consensus       396 sVID~  400 (426)
T 3c75_H          396 HIYDA  400 (426)
T ss_dssp             EEEET
T ss_pred             EEEEC
Confidence            44443

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.48  E-value=2e-12  Score=109.59  Aligned_cols=172  Identities=15%  Similarity=0.141  Sum_probs=122.7

Q ss_pred             CeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCe-----------eeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEE
Q 022716           68 SVDQLCWDPKHADLIATASGDKTVRLWDARSGK-----------CSQQAELSGENINITYKPDGTHIAVGNRDDELTILD  136 (293)
Q Consensus        68 ~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d  136 (293)
                      +++.+++++. ..++++|+.++ +++|+++..+           ......+.. +..++|  |+++|+++ .++.|++||
T Consensus        39 ~~nlLais~~-~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d  112 (388)
T 1xip_A           39 SLQNLDISNS-KSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLD  112 (388)
T ss_dssp             CCBCEEEETT-TTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred             cccEEEEcCC-CCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence            5788888886 46888888874 5569854322           112334556 888999  89999999 889999999


Q ss_pred             ccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCee
Q 022716          137 VRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVR  216 (293)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~  216 (293)
                      +++........                    .....+.++.+.+.  .+++++.||.|.+||++++....    +...|+
T Consensus       113 v~sl~~~~~~~--------------------~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs  166 (388)
T 1xip_A          113 LEELSEFRTVT--------------------SFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQNVT  166 (388)
T ss_dssp             SSSTTCEEEEE--------------------ECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEESEE
T ss_pred             chhhhccCccc--------------------eeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccCCce
Confidence            98765322110                    01112233333322  38889999999999998775432    345899


Q ss_pred             EEEEccCCCEEEEecCCCcEEEEEcCCCCE--EEEE------e----cCCCcceeEECCCCCeEEEEEc
Q 022716          217 TISFSHTGDYIASASEDLFIDISNVHTGRT--VHQI------P----CRAAMNSVEWNPKYNLLAYAGD  273 (293)
Q Consensus       217 ~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~--~~~~------~----~~~~i~~~~~sp~~~~la~~~~  273 (293)
                      +++|||+|  ++.|..||.+++|+...+..  .+.+      .    +...|.+|.|.+++.++++-+.
T Consensus       167 ~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~~  233 (388)
T 1xip_A          167 SFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFGN  233 (388)
T ss_dssp             EEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEEC
T ss_pred             EEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEcC
Confidence            99999999  77899999999998877664  4455      1    3456899999999998877554

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.47  E-value=5.8e-12  Score=115.88  Aligned_cols=225  Identities=11%  Similarity=0.027  Sum_probs=139.8

Q ss_pred             CCCCCeEEEEeCCC---cEEEeecCCCCCCceeEE-E----eeCCcCCeeEEEEcCCCCCEEEE----EeCCCeEEEEeC
Q 022716           29 NCTGTKLASGSVDQ---TARVWHIEPHGHGKVKDI-E----LRGHADSVDQLCWDPKHADLIAT----ASGDKTVRLWDA   96 (293)
Q Consensus        29 s~~~~~l~s~~~dg---~v~iw~~~~~~~~~~~~~-~----~~~h~~~i~~~~~~~~~~~~l~s----~~~d~~i~vwd~   96 (293)
                      +|+|++++....++   .-.+|...... +....+ .    -.+|...+..++|+|++..++++    |+.+..|++||+
T Consensus        76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl  154 (695)
T 2bkl_A           76 SRRNGRFFYVRTHKDKEKAILYWRQGES-GQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDV  154 (695)
T ss_dssp             EEETTEEEEEEECTTCSSCEEEEEESTT-SCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEET
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCC-CCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEEC
Confidence            37899988776654   45666553211 111111 1    12455568899999986544433    334568999999


Q ss_pred             CCCeeeeeeeecC-ceEEEEEcCCCCEEEEEeCCCe-------------EEEEEccccceeeeecccceeeeeEEecCCC
Q 022716           97 RSGKCSQQAELSG-ENINITYKPDGTHIAVGNRDDE-------------LTILDVRKFKPIHRRKFGYEVNEIAWNMTGE  162 (293)
Q Consensus        97 ~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~d~~-------------i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~  162 (293)
                      .+++......... ....++|+|||+.|+.++.|..             |.+|++.+......                 
T Consensus       155 ~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~-----------------  217 (695)
T 2bkl_A          155 DSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDT-----------------  217 (695)
T ss_dssp             TTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCE-----------------
T ss_pred             CCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhce-----------------
Confidence            9987641111121 1257899999999999988765             88998876442111                 


Q ss_pred             EEEEec--CCCCEEEEEECCCCCEEEEecCCC----cEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEec---CC
Q 022716          163 MFFLTT--GNAGCYCIAIDPMGRYFAVGSADS----LVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASAS---ED  233 (293)
Q Consensus       163 ~~~~~~--~~~~~~~~~~~~~~~~l~~gs~d~----~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s---~d  233 (293)
                       .....  +......+.++|+|++|+.++.++    .|.+++...+. ...+..+...+....+ |+|.+++...   .+
T Consensus       218 -lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~  294 (695)
T 2bkl_A          218 -VVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD-FRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPR  294 (695)
T ss_dssp             -EEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS-CEEEEECSSCCEEEEE-ETTEEEEEECTTCTT
T ss_pred             -EEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc-eEEeecCCCceEEEEe-cCCcEEEEECCCCCC
Confidence             01111  123456788999999988887666    67777765543 3344555555666656 6666444443   25


Q ss_pred             CcEEEEEcCCCCE---EEEEec--CCCcceeEECCCCCeEEEEEcCC
Q 022716          234 LFIDISNVHTGRT---VHQIPC--RAAMNSVEWNPKYNLLAYAGDDK  275 (293)
Q Consensus       234 ~~i~iw~~~~~~~---~~~~~~--~~~i~~~~~sp~~~~la~~~~d~  275 (293)
                      +.|.+|++.++..   ...+..  ...+..++|+ ++.+++++..|+
T Consensus       295 ~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg  340 (695)
T 2bkl_A          295 QRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDA  340 (695)
T ss_dssp             CEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETT
T ss_pred             CEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECC
Confidence            7899999987753   333333  3357788888 566777777664

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.46  E-value=4.9e-11  Score=100.30  Aligned_cols=267  Identities=10%  Similarity=0.017  Sum_probs=160.2

Q ss_pred             ccEEEEEECCCCCeEEEEe--CCCcEEEeecCCCCCCceeEE-----EeeCCcCCeeEEEEcCCCCCEEEEEeC-----C
Q 022716           21 KKVHSVAWNCTGTKLASGS--VDQTARVWHIEPHGHGKVKDI-----ELRGHADSVDQLCWDPKHADLIATASG-----D   88 (293)
Q Consensus        21 ~~v~~l~~s~~~~~l~s~~--~dg~v~iw~~~~~~~~~~~~~-----~~~~h~~~i~~~~~~~~~~~~l~s~~~-----d   88 (293)
                      ..+..++++++|+.+++..  .++.++||.++ .  +.....     ...+|...+..+++.+++ .++++-..     +
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~-~--g~~~~~p~~~~~~~~~~~~p~gv~~d~~g-~L~v~D~g~~~~~~   92 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELT-Q--DGLIPFPPQSGNAIITFDTVLGIKSDGNG-IVWMLDNGNQSKSV   92 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEE-T--TEEEESCCCCSSCCCCCSCEEEEEECSSS-EEEEEECHHHHTSC
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEEC-C--CCeecCCCcccCcccceeEeeEEEEcCCC-cEEEEcCCCCcCCC
Confidence            6899999999999988864  23446777765 1  121100     012345678899998874 45554433     5


Q ss_pred             CeEEEEeCCCCeeeeeeeec-------CceEEEEEcCCCCEE-EEEe---CCCeEEEEEccccceeeeecc--cceeeee
Q 022716           89 KTVRLWDARSGKCSQQAELS-------GENINITYKPDGTHI-AVGN---RDDELTILDVRKFKPIHRRKF--GYEVNEI  155 (293)
Q Consensus        89 ~~i~vwd~~~~~~~~~~~~~-------~~~~~~~~~~~~~~l-~~~~---~d~~i~l~d~~~~~~~~~~~~--~~~~~~v  155 (293)
                      ..|.+||+.+++....+...       .....++++|++..+ ++..   .++.|.+||+.+.+..+....  .......
T Consensus        93 ~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~  172 (343)
T 2qe8_A           93 PKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDI  172 (343)
T ss_dssp             CEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSC
T ss_pred             CeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccccc
Confidence            78999999988866655543       134678999865444 5544   578999999986654433211  0000001


Q ss_pred             EEecCCCEEEEecC-------CCCEEEEEECCCCCEEEEecCCC-cEEEEeCC---CCEE-----EE--EeeccCCCeeE
Q 022716          156 AWNMTGEMFFLTTG-------NAGCYCIAIDPMGRYFAVGSADS-LVSLWDIS---EMLC-----VR--TFTKLEWPVRT  217 (293)
Q Consensus       156 ~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~gs~d~-~i~iwd~~---~~~~-----~~--~~~~~~~~v~~  217 (293)
                      .+.+.+..+.....       ...+..++++|+++.|..+..++ .+..++..   .+..     ..  ...++......
T Consensus       173 ~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdg  252 (343)
T 2qe8_A          173 DLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDG  252 (343)
T ss_dssp             CCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSC
T ss_pred             ceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCce
Confidence            11122221111111       12356799999999888776665 45555431   1100     00  01123335677


Q ss_pred             EEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEec--CCCcceeEECCCCCeEEEEEcCCCCCC------CCcceEEEEe
Q 022716          218 ISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPC--RAAMNSVEWNPKYNLLAYAGDDKNKYQ------ADEGVFRIYG  289 (293)
Q Consensus       218 l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~--~~~i~~~~~sp~~~~la~~~~d~~~~~------~~~~~~~~~~  289 (293)
                      ++++++|.+.++...++.|.+||.++++.......  -.....++|.|++.++++++....+..      ..+..++||.
T Consensus       253 ia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f~~~~~~~~~~~~i~~  332 (343)
T 2qe8_A          253 ISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSAPLNAGENISAPPYYIFR  332 (343)
T ss_dssp             EEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGSGGGBTTCCCCCSCEEEEE
T ss_pred             EEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCccccccccccCCCcCcCCeEEEE
Confidence            99999999999999999999999866654322221  234678999999988888775432211      1223467776


Q ss_pred             ee
Q 022716          290 FE  291 (293)
Q Consensus       290 ~~  291 (293)
                      +.
T Consensus       333 ~~  334 (343)
T 2qe8_A          333 LK  334 (343)
T ss_dssp             EC
T ss_pred             EE
Confidence            53

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.45  E-value=8.7e-11  Score=99.28  Aligned_cols=249  Identities=13%  Similarity=0.058  Sum_probs=162.7

Q ss_pred             EECCCCCeEEEEeC-----CCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEe---------CCCeEE
Q 022716           27 AWNCTGTKLASGSV-----DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATAS---------GDKTVR   92 (293)
Q Consensus        27 ~~s~~~~~l~s~~~-----dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~---------~d~~i~   92 (293)
                      ...|+++++.....     ++.|.+.|.....  ....+.. +. .+ . +.++|++..++++..         .++.|.
T Consensus        39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~--v~~~I~v-G~-~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~Vs  112 (386)
T 3sjl_D           39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGR--VIGMIDG-GF-LP-N-PVVADDGSFIAHASTVFSRIARGERTDYVE  112 (386)
T ss_dssp             CCCCCTTEEEEEECGGGCSSEEEEEEETTTTE--EEEEEEE-CS-SC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEE
T ss_pred             ccCCCCCEEEEEcCcccCCCCEEEEEECCCCe--EEEEEEC-CC-CC-c-EEECCCCCEEEEEcccccccccCCCCCEEE
Confidence            44689998877655     6889999987532  2222221 32 23 3 899998766555542         367899


Q ss_pred             EEeCCCCeeeeeeeecC--------ceEEEEEcCCCCEEEEEeC--CCeEEEEEccccceeeeecccce-------e-ee
Q 022716           93 LWDARSGKCSQQAELSG--------ENINITYKPDGTHIAVGNR--DDELTILDVRKFKPIHRRKFGYE-------V-NE  154 (293)
Q Consensus        93 vwd~~~~~~~~~~~~~~--------~~~~~~~~~~~~~l~~~~~--d~~i~l~d~~~~~~~~~~~~~~~-------~-~~  154 (293)
                      +||..+.+....+....        .+..++++|||+++++...  ++.+.++|+.+.+.+.....+..       . ..
T Consensus       113 viD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~  192 (386)
T 3sjl_D          113 VFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTF  192 (386)
T ss_dssp             EECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEE
T ss_pred             EEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCCCcee
Confidence            99999998877776542        4567999999999988864  68999999999887777654221       0 11


Q ss_pred             eEEecCCCEEEEecCC-CCEEE----------------EEE-CCCCCEEEEecCCCcEEEEeCCCCE--EEEEee---c-
Q 022716          155 IAWNMTGEMFFLTTGN-AGCYC----------------IAI-DPMGRYFAVGSADSLVSLWDISEML--CVRTFT---K-  210 (293)
Q Consensus       155 v~~~~~~~~~~~~~~~-~~~~~----------------~~~-~~~~~~l~~gs~d~~i~iwd~~~~~--~~~~~~---~-  210 (293)
                      +..++++.+..+.... ..+..                ..| .++|+++. .+.+|+|.+.|.....  .+..+.   . 
T Consensus       193 ~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~  271 (386)
T 3sjl_D          193 FMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEA  271 (386)
T ss_dssp             EEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHH
T ss_pred             EEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccc
Confidence            2445666666655443 22211                122 24565444 5557899999986542  222221   0 


Q ss_pred             ------cCCCeeEEEEccCCCEEEEecC----------CCcEEEEEcCCCCEEEEEecCCCcceeEECCCCC-eEEEEEc
Q 022716          211 ------LEWPVRTISFSHTGDYIASASE----------DLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYN-LLAYAGD  273 (293)
Q Consensus       211 ------~~~~v~~l~~sp~~~~l~s~s~----------d~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~-~la~~~~  273 (293)
                            .......++++|+++.++....          ...|.+.|..+++.++.+....++..|+++|+++ +|.++..
T Consensus       272 ~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn~  351 (386)
T 3sjl_D          272 ERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALST  351 (386)
T ss_dssp             HHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEEEEET
T ss_pred             cccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEEEEcC
Confidence                  0123445788999988766532          2579999999999999988777899999999996 5555443


Q ss_pred             -CCCCCCCCc
Q 022716          274 -DKNKYQADE  282 (293)
Q Consensus       274 -d~~~~~~~~  282 (293)
                       ++.+.+.|.
T Consensus       352 ~~~~VsViD~  361 (386)
T 3sjl_D          352 GDKTLYIHDA  361 (386)
T ss_dssp             TTTEEEEEET
T ss_pred             CCCeEEEEEC
Confidence             444444333

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.45  E-value=2.2e-11  Score=98.47  Aligned_cols=200  Identities=9%  Similarity=-0.010  Sum_probs=138.3

Q ss_pred             cccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCC
Q 022716           20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG   99 (293)
Q Consensus        20 ~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~   99 (293)
                      ...+.+++++++|+.+++.. ++.|.+|+.+...   .... .......+..+++.+++ .++++...++.|.+|+..+.
T Consensus        66 ~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~---~~~~-~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~~~  139 (270)
T 1rwi_B           66 LYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNN---QTVL-PFDGLNYPEGLAVDTQG-AVYVADRGNNRVVKLAAGSK  139 (270)
T ss_dssp             CCSCCCEEECTTCCEEEEET-TTEEEEECTTCSC---CEEC-CCCSCSSEEEEEECTTC-CEEEEEGGGTEEEEECTTCC
T ss_pred             cCCcceeEECCCCCEEEEcC-CCEEEEEeCCCce---Eeee-ecCCcCCCcceEECCCC-CEEEEECCCCEEEEEECCCc
Confidence            35678999999998666655 8899999876421   1111 11223567889998864 57777777889999976554


Q ss_pred             eeeeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEE
Q 022716          100 KCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAI  178 (293)
Q Consensus       100 ~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  178 (293)
                      ....... ....+..+++.|+|+.+++...++.|..||..........                    ......+..+++
T Consensus       140 ~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~--------------------~~~~~~p~~i~~  199 (270)
T 1rwi_B          140 TQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLP--------------------FTDITAPWGIAV  199 (270)
T ss_dssp             SCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECC--------------------CSSCCSEEEEEE
T ss_pred             eeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeec--------------------ccCCCCceEEEE
Confidence            3322111 1234567999999987777767889999997654322110                    011134668899


Q ss_pred             CCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCC
Q 022716          179 DPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGR  245 (293)
Q Consensus       179 ~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~  245 (293)
                      ++++.++++...++.|.+||................+.+++++|+|+.+++...++.|.+++....+
T Consensus       200 d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~  266 (270)
T 1rwi_B          200 DEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH  266 (270)
T ss_dssp             CTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred             CCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence            9999888888888999999987654332222223568999999999988999999999999886543

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.44  E-value=5.3e-10  Score=92.32  Aligned_cols=230  Identities=13%  Similarity=0.115  Sum_probs=147.8

Q ss_pred             cceeecCccccEEEEEECCCCC-eEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCe
Q 022716           12 HSREYTGHKKKVHSVAWNCTGT-KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKT   90 (293)
Q Consensus        12 ~~~~~~~h~~~v~~l~~s~~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~   90 (293)
                      ..+.+..+........|+|+|+ .++++..++.|..|+...    ...  .+..+...+..+.+.+++ .++++...++.
T Consensus        36 ~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g----~~~--~~~~~~~~~~gl~~d~dG-~l~v~~~~~~~  108 (305)
T 3dr2_A           36 RLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDG----TVD--VLLDATAFTNGNAVDAQQ-RLVHCEHGRRA  108 (305)
T ss_dssp             CCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETTS----CEE--EEEESCSCEEEEEECTTS-CEEEEETTTTE
T ss_pred             ceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCCC----CEE--EEeCCCCccceeeECCCC-CEEEEECCCCE
Confidence            3444555556778999999998 556777789999998642    222  233455668899999874 56665555688


Q ss_pred             EEEEeCCCCeeeeeee-ec----CceEEEEEcCCCCEEEE----EeC-------------CCeEEEEEccccceeeeecc
Q 022716           91 VRLWDARSGKCSQQAE-LS----GENINITYKPDGTHIAV----GNR-------------DDELTILDVRKFKPIHRRKF  148 (293)
Q Consensus        91 i~vwd~~~~~~~~~~~-~~----~~~~~~~~~~~~~~l~~----~~~-------------d~~i~l~d~~~~~~~~~~~~  148 (293)
                      |.+|+.. ++...... ..    ..+..+++.|+|+.+++    |..             .+.|..+|..+.+...    
T Consensus       109 v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~----  183 (305)
T 3dr2_A          109 ITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQR----  183 (305)
T ss_dssp             EEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEE----
T ss_pred             EEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEE----
Confidence            9999986 54322211 11    12346889999987776    321             2345555543322111    


Q ss_pred             cceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCC------CcEEEEeCCCCEE--EEEeec-cCCCeeEEE
Q 022716          149 GYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSAD------SLVSLWDISEMLC--VRTFTK-LEWPVRTIS  219 (293)
Q Consensus       149 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d------~~i~iwd~~~~~~--~~~~~~-~~~~v~~l~  219 (293)
                                       +. .......++++|+++.|.++...      +.|..|++.....  ...+.. ....+..++
T Consensus       184 -----------------~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~  245 (305)
T 3dr2_A          184 -----------------MA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFC  245 (305)
T ss_dssp             -----------------EE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEE
T ss_pred             -----------------Ee-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEE
Confidence                             11 11234568899999877666554      7899999865431  111211 233456789


Q ss_pred             EccCCCEEEEecCCCcEEEEEcCCCCEEEEEecCCCcceeEECCCCCeEEEEEcC
Q 022716          220 FSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDD  274 (293)
Q Consensus       220 ~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~d  274 (293)
                      +.++|++.++. .++ |.+|+. +++.+..+.....+.+++|+|+++.|..++.+
T Consensus       246 ~d~~G~lwv~~-~~g-v~~~~~-~g~~~~~~~~~~~~~~~~f~~d~~~L~it~~~  297 (305)
T 3dr2_A          246 VDRGGWLWSSS-GTG-VCVFDS-DGQLLGHIPTPGTASNCTFDQAQQRLFITGGP  297 (305)
T ss_dssp             ECTTSCEEECC-SSE-EEEECT-TSCEEEEEECSSCCCEEEECTTSCEEEEEETT
T ss_pred             ECCCCCEEEec-CCc-EEEECC-CCCEEEEEECCCceeEEEEeCCCCEEEEEcCC
Confidence            99999955544 444 899998 57777777665578999999999888877754

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.44  E-value=2.7e-10  Score=96.30  Aligned_cols=234  Identities=14%  Similarity=0.089  Sum_probs=146.0

Q ss_pred             EEECCCCCeEEEEe----------CCCcEEEeecCCCCCCceeEEEeeC--C---cCCeeEEEEcCCCCCEEEEEeC-CC
Q 022716           26 VAWNCTGTKLASGS----------VDQTARVWHIEPHGHGKVKDIELRG--H---ADSVDQLCWDPKHADLIATASG-DK   89 (293)
Q Consensus        26 l~~s~~~~~l~s~~----------~dg~v~iw~~~~~~~~~~~~~~~~~--h---~~~i~~~~~~~~~~~~l~s~~~-d~   89 (293)
                      ++++|||++|..+.          .++.|.+||.....  ....+.+..  +   -..-..+.++|++..++++... ++
T Consensus        83 va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~--v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~  160 (386)
T 3sjl_D           83 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLL--PTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAP  160 (386)
T ss_dssp             EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC--EEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSC
T ss_pred             EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCe--EEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCC
Confidence            99999999987665          36889999987542  223333321  0   1124467889986544444333 68


Q ss_pred             eEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccc-cceeeee--ccc---cee-eeeEEe-cCC
Q 022716           90 TVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRK-FKPIHRR--KFG---YEV-NEIAWN-MTG  161 (293)
Q Consensus        90 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~-~~~~~~~--~~~---~~~-~~v~~~-~~~  161 (293)
                      .|.++|+.+++....+...+.  ...+....+.+++.+.||++.+.++.. .+.....  .+.   ..+ ....|. +.+
T Consensus       161 ~VsVID~~t~~vv~tI~v~g~--~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG  238 (386)
T 3sjl_D          161 AVGVVDLEGKAFKRMLDVPDC--YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAG  238 (386)
T ss_dssp             EEEEEETTTTEEEEEEECCSE--EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTT
T ss_pred             eEEEEECCCCcEEEEEECCCc--ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCC
Confidence            999999999988877765442  122222334555666677776666654 2221111  010   001 112332 223


Q ss_pred             CEEEEec--------C-CC-----------------------CEEEEEECCCCCEEEEecC----------CCcEEEEeC
Q 022716          162 EMFFLTT--------G-NA-----------------------GCYCIAIDPMGRYFAVGSA----------DSLVSLWDI  199 (293)
Q Consensus       162 ~~~~~~~--------~-~~-----------------------~~~~~~~~~~~~~l~~gs~----------d~~i~iwd~  199 (293)
                      ..++...        . ..                       ....++++|+++.+.+...          .+.|.++|+
T Consensus       239 ~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~  318 (386)
T 3sjl_D          239 RLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDA  318 (386)
T ss_dssp             EEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEET
T ss_pred             cEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEEC
Confidence            2222111        1 00                       1123666778777665532          257999999


Q ss_pred             CCCEEEEEeeccCCCeeEEEEccCCC-EEEE-ecCCCcEEEEEcCCCCEEEEEecCCCcceeEECCC
Q 022716          200 SEMLCVRTFTKLEWPVRTISFSHTGD-YIAS-ASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPK  264 (293)
Q Consensus       200 ~~~~~~~~~~~~~~~v~~l~~sp~~~-~l~s-~s~d~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~  264 (293)
                      ++++.++.+.- ..++..|+|+||++ +|++ ...++.|.++|..+++.++.++....-+.+.+++|
T Consensus       319 ~t~kv~~~i~v-g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~~p~~l~~s~d  384 (386)
T 3sjl_D          319 KTGERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTAD  384 (386)
T ss_dssp             TTCCEEEEEEE-EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEEECC
T ss_pred             CCCeEEEEEEC-CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCCCCCceeEECCc
Confidence            99988887643 23788999999997 6655 45689999999999999999988777788888876

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.44  E-value=2.6e-09  Score=87.28  Aligned_cols=224  Identities=10%  Similarity=-0.027  Sum_probs=150.9

Q ss_pred             cccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCC
Q 022716           20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG   99 (293)
Q Consensus        20 ~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~   99 (293)
                      ...+.+++++++|+..++...++.|..||.. .   .............+..+++.++ +.++++...++.|..+|.. +
T Consensus        61 ~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g---~~~~~~~~~~~~~~~~i~~~~~-g~l~v~~~~~~~i~~~~~~-g  134 (300)
T 2qc5_A           61 DAKVMCLIVSSLGDIWFTENGANKIGKLSKK-G---GFTEYPLPQPDSGPYGITEGLN-GDIWFTQLNGDRIGKLTAD-G  134 (300)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTT-S---CEEEEECSSTTCCEEEEEECST-TCEEEEETTTTEEEEECTT-S
T ss_pred             CCcceeEEECCCCCEEEEecCCCeEEEECCC-C---CeEEecCCCCCCCCccceECCC-CCEEEEccCCCeEEEECCC-C
Confidence            4678999999999887777768889999865 2   2222333334456888888875 4677776668899999987 5


Q ss_pred             eeeee-ee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEE
Q 022716          100 KCSQQ-AE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIA  177 (293)
Q Consensus       100 ~~~~~-~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  177 (293)
                      +.... .. ....+..+++.++|+..++...++.+..+|. +..... ..                  .......+..++
T Consensus       135 ~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~------------------~~~~~~~~~~i~  194 (300)
T 2qc5_A          135 TIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEE-YP------------------LPTNAAAPVGIT  194 (300)
T ss_dssp             CEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EE------------------CSSTTCCEEEEE
T ss_pred             CEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEE-ee------------------CCCCCCCcceEE
Confidence            44322 11 1245678899999986666666788988887 322111 00                  001123467889


Q ss_pred             ECCCCCEEEEecCCCcEEEEeCCCCEEEE-EeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEE-Ee-cCC
Q 022716          178 IDPMGRYFAVGSADSLVSLWDISEMLCVR-TFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQ-IP-CRA  254 (293)
Q Consensus       178 ~~~~~~~l~~gs~d~~i~iwd~~~~~~~~-~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~-~~-~~~  254 (293)
                      ++++++++++....+.|..||. ++.... ........+.++++.++|+..++...++.|..++. +++.... ++ ...
T Consensus       195 ~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~  272 (300)
T 2qc5_A          195 SGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQEYQLQTENA  272 (300)
T ss_dssp             ECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEEEEECCSTTC
T ss_pred             ECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEEEEECCccCC
Confidence            9999988888777888999998 443322 22233456889999999997777777889999998 4543321 22 124


Q ss_pred             CcceeEECCCCCeEEEE
Q 022716          255 AMNSVEWNPKYNLLAYA  271 (293)
Q Consensus       255 ~i~~~~~sp~~~~la~~  271 (293)
                      .+.++.+.|+|+++++.
T Consensus       273 ~~~~i~~~~~g~l~v~~  289 (300)
T 2qc5_A          273 EPHGITFGKDGSVWFAL  289 (300)
T ss_dssp             CCCCEEECTTSCEEEEC
T ss_pred             ccceeEeCCCCCEEEEc
Confidence            57788888888765544

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.42  E-value=1e-11  Score=105.29  Aligned_cols=174  Identities=11%  Similarity=0.095  Sum_probs=122.8

Q ss_pred             cEEEEEECCCCCeEEEEeCCCcEEEeecCCCC------CCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEe
Q 022716           22 KVHSVAWNCTGTKLASGSVDQTARVWHIEPHG------HGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWD   95 (293)
Q Consensus        22 ~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~------~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd   95 (293)
                      ++..|++++....+++|+.|+ +++|++....      ...........+.. |+.++|  + +..|+.+ .++.|++||
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d-~~~L~v~-~~~~l~v~d  112 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--H-GDQVLVS-TRNALYSLD  112 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--E-TTEEEEE-ESSEEEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--C-CCEEEEE-cCCcEEEEE
Confidence            689999999999999999875 5569864211      00011101223555 999999  3 4677777 889999999


Q ss_pred             CCCCeeeeee-eecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEE
Q 022716           96 ARSGKCSQQA-ELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCY  174 (293)
Q Consensus        96 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  174 (293)
                      +.+-...... .+...+..+.+.+.  .+++++.||.+.+||+++......                        ...+.
T Consensus       113 v~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~~------------------------~~~Vs  166 (388)
T 1xip_A          113 LEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQL------------------------AQNVT  166 (388)
T ss_dssp             SSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEE------------------------EESEE
T ss_pred             chhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCccccc------------------------cCCce
Confidence            8765433322 23344445555543  488899999999999986543210                        12467


Q ss_pred             EEEECCCCCEEEEecCCCcEEEEeCCCCEE--EEEe------e---ccCCCeeEEEEccCCCEEEE
Q 022716          175 CIAIDPMGRYFAVGSADSLVSLWDISEMLC--VRTF------T---KLEWPVRTISFSHTGDYIAS  229 (293)
Q Consensus       175 ~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~--~~~~------~---~~~~~v~~l~~sp~~~~l~s  229 (293)
                      |++|+|+|  ++.|..||++++|+...+..  ..++      .   +|...|.+|.|.++++++++
T Consensus       167 ~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          167 SFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             EEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             EEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence            89999999  67899999999999887764  4445      2   36788999999999999876

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.41  E-value=2.1e-09  Score=89.63  Aligned_cols=221  Identities=10%  Similarity=0.008  Sum_probs=141.7

Q ss_pred             cEEEEEECCCCC-eEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCe
Q 022716           22 KVHSVAWNCTGT-KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGK  100 (293)
Q Consensus        22 ~v~~l~~s~~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~  100 (293)
                      -..+..|+|++. .+++...++.|..|+.+..   ......   ....+.++.+.+++ .++++ .. ..|.+||..+++
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~---~~~~~~---~~~~v~~i~~~~dg-~l~v~-~~-~gl~~~d~~~g~  120 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLASG---RKTVHA---LPFMGSALAKISDS-KQLIA-SD-DGLFLRDTATGV  120 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTTT---EEEEEE---CSSCEEEEEEEETT-EEEEE-ET-TEEEEEETTTCC
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCCC---cEEEEE---CCCcceEEEEeCCC-eEEEE-EC-CCEEEEECCCCc
Confidence            457889999855 4566667899999998642   222222   24568899998874 45554 44 448999998876


Q ss_pred             eeeeeeec-----CceEEEEEcCCCCEEEEEeCC------CeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecC
Q 022716          101 CSQQAELS-----GENINITYKPDGTHIAVGNRD------DELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG  169 (293)
Q Consensus       101 ~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~d------~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  169 (293)
                      ........     ..+..++++|+|+.+++...+      +.+..+|  +.+. ...                    ...
T Consensus       121 ~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~-~~~--------------------~~~  177 (326)
T 2ghs_A          121 LTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKV-TKL--------------------FAD  177 (326)
T ss_dssp             EEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEE-EEE--------------------EEE
T ss_pred             EEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcE-EEe--------------------eCC
Confidence            54332221     235578899999876654422      3444444  2211 110                    001


Q ss_pred             CCCEEEEEECCCCCEE-EEecCCCcEEEEeCC--CC-E-----EEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEE
Q 022716          170 NAGCYCIAIDPMGRYF-AVGSADSLVSLWDIS--EM-L-----CVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISN  240 (293)
Q Consensus       170 ~~~~~~~~~~~~~~~l-~~gs~d~~i~iwd~~--~~-~-----~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~  240 (293)
                      ......++++|+++.+ ++.+.++.|.+||+.  ++ .     ....+......+..+++.++|.+.++...++.|.+|+
T Consensus       178 ~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d  257 (326)
T 2ghs_A          178 ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYD  257 (326)
T ss_dssp             ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEEC
T ss_pred             CcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEEC
Confidence            1123468899999865 445567899999985  44 2     2222322345578899999999887776778899999


Q ss_pred             cCCCCEEEEEecCC-CcceeEEC-CCCCeEEEEEcCC
Q 022716          241 VHTGRTVHQIPCRA-AMNSVEWN-PKYNLLAYAGDDK  275 (293)
Q Consensus       241 ~~~~~~~~~~~~~~-~i~~~~~s-p~~~~la~~~~d~  275 (293)
                      . +++.+..+.... .+.+++|+ |++..|..++..+
T Consensus       258 ~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~~  293 (326)
T 2ghs_A          258 T-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSARE  293 (326)
T ss_dssp             T-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred             C-CCCEEEEEECCCCCcEEEEEecCCCCEEEEEecCC
Confidence            8 677766665433 58899998 8988776665544

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.38  E-value=7.9e-11  Score=108.28  Aligned_cols=226  Identities=11%  Similarity=0.116  Sum_probs=135.2

Q ss_pred             CccccEEEEEECCCCCeEEEE-----eCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCC---
Q 022716           18 GHKKKVHSVAWNCTGTKLASG-----SVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDK---   89 (293)
Q Consensus        18 ~h~~~v~~l~~s~~~~~l~s~-----~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~---   89 (293)
                      +|...+..++|||||++||-+     +.+.+|++||++...   .....+.+.  ....++|+ ++ +.|+.++.+.   
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~---~~~~~~~~~--k~~~~~Ws-Dg-~~l~y~~~~~~~~  198 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQ---PLETPLKDV--KFSGISWL-GN-EGFFYSSYDKPDG  198 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCS---EEEEEEEEE--ESCCCEEE-TT-TEEEEEESSCCC-
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCC---CCccccCCc--eeccEEEe-CC-CEEEEEEecCccc
Confidence            456689999999999999843     333679999998542   222222211  12456788 65 4455555553   


Q ss_pred             ----------eEEEEeCCCCeee--eeeeecC----ceEEEEEcCCCCEEEEEeC----CCeEEEEEccccc-eeeeecc
Q 022716           90 ----------TVRLWDARSGKCS--QQAELSG----ENINITYKPDGTHIAVGNR----DDELTILDVRKFK-PIHRRKF  148 (293)
Q Consensus        90 ----------~i~vwd~~~~~~~--~~~~~~~----~~~~~~~~~~~~~l~~~~~----d~~i~l~d~~~~~-~~~~~~~  148 (293)
                                .|++|++.++...  ..++...    ....+.++|||++++....    ++.+.++|+.+.. ...... 
T Consensus       199 ~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~-  277 (693)
T 3iuj_A          199 SELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQ-  277 (693)
T ss_dssp             ------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEE-
T ss_pred             ccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEe-
Confidence                      4999998776431  2222222    2567899999998866543    3588999986642 111111 


Q ss_pred             cceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCE-EEEecC---CCcEEEEeCCCCEE--EEEeeccCCCeeEEEEcc
Q 022716          149 GYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRY-FAVGSA---DSLVSLWDISEMLC--VRTFTKLEWPVRTISFSH  222 (293)
Q Consensus       149 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~gs~---d~~i~iwd~~~~~~--~~~~~~~~~~v~~l~~sp  222 (293)
                                         ......... +++++.. ++....   .+.|..+|+.++..  .+.+..+...+.  .|+|
T Consensus       278 -------------------~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~  335 (693)
T 3iuj_A          278 -------------------GDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHS  335 (693)
T ss_dssp             -------------------CSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEE
T ss_pred             -------------------CCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEE
Confidence                               111111122 2334433 333333   35788899877543  234555655554  8999


Q ss_pred             CCCEEEEecC-CC--cEEEEEcCCCCEEEEEe--cCCCcceeEECCCCCeEEEEEcC
Q 022716          223 TGDYIASASE-DL--FIDISNVHTGRTVHQIP--CRAAMNSVEWNPKYNLLAYAGDD  274 (293)
Q Consensus       223 ~~~~l~s~s~-d~--~i~iw~~~~~~~~~~~~--~~~~i~~~~~sp~~~~la~~~~d  274 (293)
                      ++++|+.... ++  .|++|+... ...+.+.  ....+..+.++|++..++....+
T Consensus       336 ~g~~lv~~~~~~g~~~l~~~d~~g-~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss  391 (693)
T 3iuj_A          336 GSGYLFAEYMVDATARVEQFDYEG-KRVREVALPGLGSVSGFNGKHDDPALYFGFEN  391 (693)
T ss_dssp             ETTEEEEEEEETTEEEEEEECTTS-CEEEEECCSSSSEEEECCCCTTCSCEEEEEEC
T ss_pred             ECCEEEEEEEECCeeEEEEEECCC-CeeEEeecCCCceEEeeecCCCCCEEEEEecC
Confidence            9998877664 44  588898864 4455543  33456678888998877666543

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.35  E-value=7.2e-10  Score=91.43  Aligned_cols=203  Identities=10%  Similarity=0.074  Sum_probs=130.5

Q ss_pred             ccccEEEEEECCC-CCeEEEEeCCCcEEEeecCCCCCCceeEE-E-e-eC-CcCCeeEEEEcCCCCCEEEEEeCC-----
Q 022716           19 HKKKVHSVAWNCT-GTKLASGSVDQTARVWHIEPHGHGKVKDI-E-L-RG-HADSVDQLCWDPKHADLIATASGD-----   88 (293)
Q Consensus        19 h~~~v~~l~~s~~-~~~l~s~~~dg~v~iw~~~~~~~~~~~~~-~-~-~~-h~~~i~~~~~~~~~~~~l~s~~~d-----   88 (293)
                      +...+.+++++++ |+.+++ +.++.|.+||.+ ..   .... . . .+ ....+..+.+.+++ .++++...+     
T Consensus        69 ~~~~~~~i~~~~~~g~l~v~-~~~~~l~~~d~~-g~---~~~~~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~~~~  142 (314)
T 1pjx_A           69 YGGIPAGCQCDRDANQLFVA-DMRLGLLVVQTD-GT---FEEIAKKDSEGRRMQGCNDCAFDYEG-NLWITAPAGEVAPA  142 (314)
T ss_dssp             EECCEEEEEECSSSSEEEEE-ETTTEEEEEETT-SC---EEECCSBCTTSCBCBCCCEEEECTTS-CEEEEECBCBCTTS
T ss_pred             CCCCCceEEEecCCCcEEEE-ECCCCEEEEeCC-CC---EEEEEeccCCCccccCCcCEEECCCC-CEEEEecCcccccc
Confidence            5567999999999 654444 444578888876 21   1111 0 0 01 12357889998864 677666554     


Q ss_pred             ----------CeEEEEeCCCCeeeeeeeecCceEEEEEc----CCCCEEEEE-eCCCeEEEEEccc-cceeeeeccccee
Q 022716           89 ----------KTVRLWDARSGKCSQQAELSGENINITYK----PDGTHIAVG-NRDDELTILDVRK-FKPIHRRKFGYEV  152 (293)
Q Consensus        89 ----------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~-~~d~~i~l~d~~~-~~~~~~~~~~~~~  152 (293)
                                +.|..+|.. ++..........+..++++    |+++.++++ ..++.|.+||++. ........     
T Consensus       143 ~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~-----  216 (314)
T 1pjx_A          143 DYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKV-----  216 (314)
T ss_dssp             CCCBTTSSSCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEE-----
T ss_pred             cccccccCCCCeEEEECCC-CCEEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceE-----
Confidence                      567777765 5443333333456678999    999766555 4678999999762 22110000     


Q ss_pred             eeeEEecCCCEEEEecCC-CCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEE-EEe
Q 022716          153 NEIAWNMTGEMFFLTTGN-AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYI-ASA  230 (293)
Q Consensus       153 ~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l-~s~  230 (293)
                          +.      .+..+. ..+..++++++|+++++...++.|.+||.++++.+..+..+...+.+++|+|+|++| ++.
T Consensus       217 ----~~------~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~  286 (314)
T 1pjx_A          217 ----WG------HIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTE  286 (314)
T ss_dssp             ----EE------ECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEE
T ss_pred             ----EE------ECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEe
Confidence                00      000111 335678899999998888788999999988665555555555779999999999955 555


Q ss_pred             cCCCcEEEEEcCC
Q 022716          231 SEDLFIDISNVHT  243 (293)
Q Consensus       231 s~d~~i~iw~~~~  243 (293)
                      ..++.|..+++..
T Consensus       287 ~~~~~l~~~~~~~  299 (314)
T 1pjx_A          287 HENNAVWKFEWQR  299 (314)
T ss_dssp             TTTTEEEEEECSS
T ss_pred             CCCCeEEEEeCCC
Confidence            6678888888764

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.35  E-value=4.6e-10  Score=103.97  Aligned_cols=226  Identities=12%  Similarity=0.051  Sum_probs=134.0

Q ss_pred             CCCCCeEEEEeCCCc---EEEeecCCCC--CCceeEE-E----eeCCcCCeeEEEEcCCCCCEEEEEeCCC----eEEEE
Q 022716           29 NCTGTKLASGSVDQT---ARVWHIEPHG--HGKVKDI-E----LRGHADSVDQLCWDPKHADLIATASGDK----TVRLW   94 (293)
Q Consensus        29 s~~~~~l~s~~~dg~---v~iw~~~~~~--~~~~~~~-~----~~~h~~~i~~~~~~~~~~~~l~s~~~d~----~i~vw   94 (293)
                      +|+|++++....++.   -.+|..+...  .+....+ .    -.+|...+..+.|+|++..++++.+.+|    .|++|
T Consensus       115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~  194 (741)
T 1yr2_A          115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV  194 (741)
T ss_dssp             EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence            389999887665543   6677654220  1111111 0    1233346788999998654444443333    59999


Q ss_pred             eCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCe--------------EEEEEccccceeeeecccceeeeeEEecC
Q 022716           95 DARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDE--------------LTILDVRKFKPIHRRKFGYEVNEIAWNMT  160 (293)
Q Consensus        95 d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~--------------i~l~d~~~~~~~~~~~~~~~~~~v~~~~~  160 (293)
                      |+.+++.............++|+|| +.|+.++.+..              |.+|++.+.....                
T Consensus       195 dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~----------------  257 (741)
T 1yr2_A          195 GVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSAD----------------  257 (741)
T ss_dssp             ETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGC----------------
T ss_pred             ECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhC----------------
Confidence            9999876543211122246889999 99998886654              6677765432110                


Q ss_pred             CCEEEEecCC--CCEEEEEECCCCCEEEEecCCC-----cEEEEeCCCCE-E-EEEeeccCCCeeEEEEccCCCEEEEec
Q 022716          161 GEMFFLTTGN--AGCYCIAIDPMGRYFAVGSADS-----LVSLWDISEML-C-VRTFTKLEWPVRTISFSHTGDYIASAS  231 (293)
Q Consensus       161 ~~~~~~~~~~--~~~~~~~~~~~~~~l~~gs~d~-----~i~iwd~~~~~-~-~~~~~~~~~~v~~l~~sp~~~~l~s~s  231 (293)
                        ........  .....+.++|+|++|+..+.++     .|.+||+.++. . ...+..+...+... ++|+|+.|+..+
T Consensus       258 --~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s  334 (741)
T 1yr2_A          258 --QPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVS  334 (741)
T ss_dssp             --EEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEETTEEEEEE
T ss_pred             --EEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEE-EeccCCEEEEEE
Confidence              11111111  2356788999999888777543     89999987762 1 34455555455544 358999887776


Q ss_pred             CC----CcEEEEEcCCCC-EEEE-EecC-CCcceeEECCCCCeEEEEEcCC
Q 022716          232 ED----LFIDISNVHTGR-TVHQ-IPCR-AAMNSVEWNPKYNLLAYAGDDK  275 (293)
Q Consensus       232 ~d----~~i~iw~~~~~~-~~~~-~~~~-~~i~~~~~sp~~~~la~~~~d~  275 (293)
                      .+    +.|.+|++.++. .... ++.. ..+..++|+ ++.++++...|+
T Consensus       335 ~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg  384 (741)
T 1yr2_A          335 GDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDA  384 (741)
T ss_dssp             CTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETT
T ss_pred             CCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECC
Confidence            53    459999988752 3333 3333 235567777 455666666654

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.34  E-value=1.1e-08  Score=86.99  Aligned_cols=217  Identities=13%  Similarity=0.020  Sum_probs=134.5

Q ss_pred             EEEECCCCCeEEEEe----------CCCcEEEeecCCCCCCceeEEEee--CC---cCCeeEEEEcCCCCCEEEEEeC--
Q 022716           25 SVAWNCTGTKLASGS----------VDQTARVWHIEPHGHGKVKDIELR--GH---ADSVDQLCWDPKHADLIATASG--   87 (293)
Q Consensus        25 ~l~~s~~~~~l~s~~----------~dg~v~iw~~~~~~~~~~~~~~~~--~h---~~~i~~~~~~~~~~~~l~s~~~--   87 (293)
                      .++++|||++|..+.          .++.|.+||.....  ....+.+.  .+   ...-..+.++|++. .|+.+..  
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~--~~~~i~~~~~~~~~~g~~p~~~~~spDG~-~l~v~n~~~  146 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFL--PIADIELPDAPRFDVGPYSWMNANTPNNA-DLLFFQFAA  146 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCc--EEEEEECCCccccccCCCccceEECCCCC-EEEEEecCC
Confidence            899999999998775          36889999986432  22222222  00   11234778999865 5555543  


Q ss_pred             CCeEEEEeCCCCeeeee-eeecCceEEEEEcCCC-CEEEEEeCCCeEEEEEccccceeeeec-----cc-cee-eeeEEe
Q 022716           88 DKTVRLWDARSGKCSQQ-AELSGENINITYKPDG-THIAVGNRDDELTILDVRKFKPIHRRK-----FG-YEV-NEIAWN  158 (293)
Q Consensus        88 d~~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~l~d~~~~~~~~~~~-----~~-~~~-~~v~~~  158 (293)
                      +..|.++| .+++.... +...+   ++.+.|++ +.+++.+.|+++.++|. +.+......     .+ ..+ ....+.
T Consensus       147 ~~~v~viD-~t~~~~~~~i~~~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~  221 (373)
T 2mad_H          147 GPAVGLVV-QGGSSDDQLLSSPT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQA  221 (373)
T ss_pred             CCeEEEEE-CCCCEEeEEcCCCc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeE
Confidence            57899999 98877665 44333   24444554 34555667888888888 544432110     00 000 000011


Q ss_pred             cCCC----------EEEEec-----------------------CCCCEEEEEECCCCCEEEEecC----------CCcEE
Q 022716          159 MTGE----------MFFLTT-----------------------GNAGCYCIAIDPMGRYFAVGSA----------DSLVS  195 (293)
Q Consensus       159 ~~~~----------~~~~~~-----------------------~~~~~~~~~~~~~~~~l~~gs~----------d~~i~  195 (293)
                      +.+.          ...+..                       .......++++|+++.+.++..          .+.|.
T Consensus       222 ~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~  301 (373)
T 2mad_H          222 NKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVT  301 (373)
T ss_pred             ecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEE
Confidence            1111          110000                       0112234678898887666543          35799


Q ss_pred             EEeCCCCEEEEEeeccCCCeeEEEEccCCC-EEEEec-CCCcEEEEEcCCCCEEEEE
Q 022716          196 LWDISEMLCVRTFTKLEWPVRTISFSHTGD-YIASAS-EDLFIDISNVHTGRTVHQI  250 (293)
Q Consensus       196 iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~-~l~s~s-~d~~i~iw~~~~~~~~~~~  250 (293)
                      ++|..+++.+.++. .......++|+|||+ .++++. .++.|.++|..+++.+..+
T Consensus       302 VID~~t~~vv~~i~-~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i  357 (373)
T 2mad_H          302 SVTGLVGQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST  357 (373)
T ss_pred             EEECCCCEEEEEEE-CCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence            99999999888874 334689999999999 777777 5899999999999988763

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.26  E-value=6.7e-09  Score=89.20  Aligned_cols=233  Identities=12%  Similarity=0.052  Sum_probs=136.9

Q ss_pred             EEEECCCCCeEEEEe----------CCCcEEEeecCCCCCCceeEEEeeCC-----cCCeeEEEEcCCCCCEEEEEeC--
Q 022716           25 SVAWNCTGTKLASGS----------VDQTARVWHIEPHGHGKVKDIELRGH-----ADSVDQLCWDPKHADLIATASG--   87 (293)
Q Consensus        25 ~l~~s~~~~~l~s~~----------~dg~v~iw~~~~~~~~~~~~~~~~~h-----~~~i~~~~~~~~~~~~l~s~~~--   87 (293)
                      .++++|||++|..+.          .++.|.++|.....  ....+.+.+-     -..-..+.++|++. .++.+..  
T Consensus       122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~--vv~~I~v~g~~r~~~g~~P~~~~~spDGk-~lyV~n~~~  198 (426)
T 3c75_H          122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFL--PIADIELPDAPRFLVGTYQWMNALTPDNK-NLLFYQFSP  198 (426)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC--EEEEEEETTCCCCCBSCCGGGSEECTTSS-EEEEEECSS
T ss_pred             ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCc--EEEEEECCCccccccCCCcceEEEcCCCC-EEEEEecCC
Confidence            899999999987775          46789999987542  2233333200     11234567889864 5555543  


Q ss_pred             CCeEEEEeCCCCeeeeeeeecCceEEEEEcCCC-CEEEEEeCCCeEEEEEccccceeee----ecccc-e-eeeeEEecC
Q 022716           88 DKTVRLWDARSGKCSQQAELSGENINITYKPDG-THIAVGNRDDELTILDVRKFKPIHR----RKFGY-E-VNEIAWNMT  160 (293)
Q Consensus        88 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~l~d~~~~~~~~~----~~~~~-~-~~~v~~~~~  160 (293)
                      ++.|.+.|+.+.+....+...+.   ....|++ ..+++.+.||++.+.++...+....    ...+. . ...+.+.+.
T Consensus       199 ~~~VsVID~~t~kvv~~I~v~g~---~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~d  275 (426)
T 3c75_H          199 APAVGVVDLEGKTFDRMLDVPDC---YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLR  275 (426)
T ss_dssp             SCEEEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTT
T ss_pred             CCeEEEEECCCCeEEEEEEcCCc---eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCC
Confidence            67899999999988777665432   1222322 3344444555555555532221100    00000 0 001112222


Q ss_pred             CCEEEEecCCC---------------------------------CEEEEEECCCCCEEEEecC----------CCcEEEE
Q 022716          161 GEMFFLTTGNA---------------------------------GCYCIAIDPMGRYFAVGSA----------DSLVSLW  197 (293)
Q Consensus       161 ~~~~~~~~~~~---------------------------------~~~~~~~~~~~~~l~~gs~----------d~~i~iw  197 (293)
                      +..+++.....                                 ....++++|+++.+.+...          ++.|.++
T Consensus       276 g~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVI  355 (426)
T 3c75_H          276 SGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVL  355 (426)
T ss_dssp             TCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEE
T ss_pred             CCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEE
Confidence            22221111110                                 0112577888776555432          3579999


Q ss_pred             eCCCCEEEEEeeccCCCeeEEEEccCCC-EEEEec-CCCcEEEEEcCCCCEEEEEecCCCcceeEECCC
Q 022716          198 DISEMLCVRTFTKLEWPVRTISFSHTGD-YIASAS-EDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPK  264 (293)
Q Consensus       198 d~~~~~~~~~~~~~~~~v~~l~~sp~~~-~l~s~s-~d~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~  264 (293)
                      |..+.+.+.++..- .....+.|+|||+ ++++.. .++.|.++|..+++.++.+..-+.-..+..+||
T Consensus       356 D~~T~kvv~~I~vg-~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI~~vG~~P~~i~~~~  423 (426)
T 3c75_H          356 NAETGERINKIELG-HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSVDQLGRGPQIITTHD  423 (426)
T ss_dssp             ETTTCCEEEEEEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCSSSCCEEECCC
T ss_pred             ECCCCeEEEEEECC-CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEecCCCCCCcEEEcCC
Confidence            99999888877532 3588999999999 887777 699999999999999988732222233555553

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.25  E-value=6.1e-09  Score=88.93  Aligned_cols=222  Identities=13%  Similarity=0.105  Sum_probs=141.2

Q ss_pred             CCCCeEE-EEeCCCcEEEeecCCCCC-CceeEEE----ee---CCcCCeeEEEEcCCCCCEEEEEeCC------CeEEEE
Q 022716           30 CTGTKLA-SGSVDQTARVWHIEPHGH-GKVKDIE----LR---GHADSVDQLCWDPKHADLIATASGD------KTVRLW   94 (293)
Q Consensus        30 ~~~~~l~-s~~~dg~v~iw~~~~~~~-~~~~~~~----~~---~h~~~i~~~~~~~~~~~~l~s~~~d------~~i~vw   94 (293)
                      ++.++|+ +|..++.|.++|+.+... .......    +.   +- ..-..+...|++  +++++..+      +.+.+.
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~-s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~vl  169 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGY-SRLHTVHCGPDA--IYISALGNEEGEGPGGILML  169 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCE-EEEEEEEECSSC--EEEEEEEETTSCSCCEEEEE
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCC-CcccceeECCCe--EEEEcCCCcCCCCCCeEEEE
Confidence            7788775 566789999999864321 1211111    00   11 122344566764  77787776      789999


Q ss_pred             eCCCCeeeeeeeecCc----eEEEEEcCCCCEEEEEe-------------------CCCeEEEEEccccceeeeecccce
Q 022716           95 DARSGKCSQQAELSGE----NINITYKPDGTHIAVGN-------------------RDDELTILDVRKFKPIHRRKFGYE  151 (293)
Q Consensus        95 d~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~-------------------~d~~i~l~d~~~~~~~~~~~~~~~  151 (293)
                      |.++.+.+..++....    ...+.|+|+++.+++..                   .+.+|.+||+.+.+..+....+..
T Consensus       170 D~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~  249 (462)
T 2ece_A          170 DHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEE  249 (462)
T ss_dssp             CTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTT
T ss_pred             ECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCC
Confidence            9999888877764422    33477899999888874                   368999999987665554433210


Q ss_pred             eeeeEEecCCCEEEEecCCCCEEEE--EECCCCCEEEEec------CCCcEEEEeCCCCEE--EEEe--ecc--------
Q 022716          152 VNEIAWNMTGEMFFLTTGNAGCYCI--AIDPMGRYFAVGS------ADSLVSLWDISEMLC--VRTF--TKL--------  211 (293)
Q Consensus       152 ~~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~gs------~d~~i~iwd~~~~~~--~~~~--~~~--------  211 (293)
                                        .....-+  +++|+++++.+++      .+++|.+|....+..  .+.+  ...        
T Consensus       250 ------------------g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~  311 (462)
T 2ece_A          250 ------------------NRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPE  311 (462)
T ss_dssp             ------------------EEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCG
T ss_pred             ------------------CCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccc
Confidence                              0011123  3478887765555      456777765544321  1111  110        


Q ss_pred             --------CCCeeEEEEccCCCEEEEec-CCCcEEEEEcCC---CCEEEEEecCCC---------------cceeEECCC
Q 022716          212 --------EWPVRTISFSHTGDYIASAS-EDLFIDISNVHT---GRTVHQIPCRAA---------------MNSVEWNPK  264 (293)
Q Consensus       212 --------~~~v~~l~~sp~~~~l~s~s-~d~~i~iw~~~~---~~~~~~~~~~~~---------------i~~~~~sp~  264 (293)
                              ......|.+||||++|..+. ..+.|.++|+..   .+.+..+...+.               -+.++++|+
T Consensus       312 ~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpD  391 (462)
T 2ece_A          312 ILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRD  391 (462)
T ss_dssp             GGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTT
T ss_pred             cccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCC
Confidence                    13467899999999986665 578899999863   345556655422               478999999


Q ss_pred             CCeEEEEE
Q 022716          265 YNLLAYAG  272 (293)
Q Consensus       265 ~~~la~~~  272 (293)
                      |++|.++.
T Consensus       392 Gk~LyVaN  399 (462)
T 2ece_A          392 GRRVYVTN  399 (462)
T ss_dssp             SSEEEEEC
T ss_pred             CCEEEEEc
Confidence            99999888

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.25  E-value=3.8e-09  Score=86.81  Aligned_cols=191  Identities=12%  Similarity=0.051  Sum_probs=120.5

Q ss_pred             ccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEE-eeC--CcCCeeEEEEcCCCCCEEEEEeCC-------
Q 022716           19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIE-LRG--HADSVDQLCWDPKHADLIATASGD-------   88 (293)
Q Consensus        19 h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~-~~~--h~~~i~~~~~~~~~~~~l~s~~~d-------   88 (293)
                      +...+.+++++++|+++++ . ++.|.+||.+..   ....+. ...  ....++.+.+.|++ .++++...+       
T Consensus        52 ~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g---~~~~~~~~~~~~~~~~~~di~~d~dG-~l~~~~~~~~~~~~~~  125 (297)
T 3g4e_A           52 MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQ---SAVVLATVDNDKKNNRFNDGKVDPAG-RYFAGTMAEETAPAVL  125 (297)
T ss_dssp             CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTT---EEEEEEECCTTCSSEEEEEEEECTTS-CEEEEEEECCSBTTBC
T ss_pred             CCCceEEEEECCCCCEEEE-E-CCeEEEEECCCC---cEEEEEecCCCCCCCCCCCEEECCCC-CEEEecCCcccccccc
Confidence            3467999999999995554 3 577888987642   222111 111  12347889999875 466654221       


Q ss_pred             --CeEEEEeCCC-CeeeeeeeecCceEEEEEcCCCCEEEE-EeCCCeEEEEEcc--ccceeeeecccceeeeeEEecCCC
Q 022716           89 --KTVRLWDARS-GKCSQQAELSGENINITYKPDGTHIAV-GNRDDELTILDVR--KFKPIHRRKFGYEVNEIAWNMTGE  162 (293)
Q Consensus        89 --~~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~d~~i~l~d~~--~~~~~~~~~~~~~~~~v~~~~~~~  162 (293)
                        ....+|.+.. ++..........+..++|+|+++.++. .+.++.|..||+.  +........        ...    
T Consensus       126 ~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~--------~~~----  193 (297)
T 3g4e_A          126 ERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRS--------VYK----  193 (297)
T ss_dssp             CTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEE--------EEE----
T ss_pred             cCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEE--------EEE----
Confidence              2334554432 333222333345668999999987754 4557899999873  322111000        000    


Q ss_pred             EEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEc-cCCCEEEEe
Q 022716          163 MFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFS-HTGDYIASA  230 (293)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s-p~~~~l~s~  230 (293)
                         +......+..++++++|++.++....+.|..||.++++.+..+..+...+++++|. |+++.|...
T Consensus       194 ---~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt  259 (297)
T 3g4e_A          194 ---LEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVT  259 (297)
T ss_dssp             ---CCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEE
T ss_pred             ---CCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEE
Confidence               00112345578899999988888888899999999888888877666789999998 888766443

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.23  E-value=3.8e-09  Score=87.13  Aligned_cols=196  Identities=11%  Similarity=0.071  Sum_probs=122.9

Q ss_pred             eecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEE--eeCC-cCCeeEEEEcCCCCCEEEE----EeC
Q 022716           15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIE--LRGH-ADSVDQLCWDPKHADLIAT----ASG   87 (293)
Q Consensus        15 ~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~--~~~h-~~~i~~~~~~~~~~~~l~s----~~~   87 (293)
                      .+..+...+..++++++|+.+++...++.|.+|+.+ .   ....+.  ..+. ...++.+.+.+++ .+++|    |..
T Consensus        80 ~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g---~~~~~~~~~~~~~~~~~~~i~~d~dG-~l~~td~~~g~~  154 (305)
T 3dr2_A           80 VLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-G---QAHLLVGRYAGKRLNSPNDLIVARDG-AIWFTDPPFGLR  154 (305)
T ss_dssp             EEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-S---CEEEEECEETTEECSCCCCEEECTTS-CEEEECCSGGGS
T ss_pred             EEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-C---CEEEEEeccCCCccCCCCCEEECCCC-CEEEeCcCCCcc
Confidence            344455678999999999977666666889999875 1   221111  1111 1346778888864 57765    321


Q ss_pred             -------------CCeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCC------CeEEEEEccccceeeeecc
Q 022716           88 -------------DKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRD------DELTILDVRKFKPIHRRKF  148 (293)
Q Consensus        88 -------------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d------~~i~l~d~~~~~~~~~~~~  148 (293)
                                   .+.|..+|..+++..... ....+..++|+||++.|+++...      +.|..||+.... +...  
T Consensus       155 ~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~--  230 (305)
T 3dr2_A          155 KPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDR--  230 (305)
T ss_dssp             CGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEE--
T ss_pred             ccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCC--
Confidence                         246777787666544333 33455679999999988777665      689899876533 1110  


Q ss_pred             cceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEE
Q 022716          149 GYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIA  228 (293)
Q Consensus       149 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~  228 (293)
                                    ..+..........++++++|++.++ +.+ .|.+|+. +++.+..+.... .+..++|+|+++.|.
T Consensus       231 --------------~~~~~~~~~~pdgi~~d~~G~lwv~-~~~-gv~~~~~-~g~~~~~~~~~~-~~~~~~f~~d~~~L~  292 (305)
T 3dr2_A          231 --------------RHFASVPDGLPDGFCVDRGGWLWSS-SGT-GVCVFDS-DGQLLGHIPTPG-TASNCTFDQAQQRLF  292 (305)
T ss_dssp             --------------EEEECCSSSCCCSEEECTTSCEEEC-CSS-EEEEECT-TSCEEEEEECSS-CCCEEEECTTSCEEE
T ss_pred             --------------eEEEECCCCCCCeEEECCCCCEEEe-cCC-cEEEECC-CCCEEEEEECCC-ceeEEEEeCCCCEEE
Confidence                          0011111122335778899995544 444 4999998 455566665444 688999999998887


Q ss_pred             EecCCCcEE
Q 022716          229 SASEDLFID  237 (293)
Q Consensus       229 s~s~d~~i~  237 (293)
                      .++.++..+
T Consensus       293 it~~~~l~~  301 (305)
T 3dr2_A          293 ITGGPCLWM  301 (305)
T ss_dssp             EEETTEEEE
T ss_pred             EEcCCeEEE
Confidence            777765433

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.19  E-value=1.5e-08  Score=87.15  Aligned_cols=205  Identities=12%  Similarity=0.005  Sum_probs=127.3

Q ss_pred             EEECCCCCeEEEEeCCC--cEEEeecCCCCCCceeEE-EeeC-CcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCee
Q 022716           26 VAWNCTGTKLASGSVDQ--TARVWHIEPHGHGKVKDI-ELRG-HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKC  101 (293)
Q Consensus        26 l~~s~~~~~l~s~~~dg--~v~iw~~~~~~~~~~~~~-~~~~-h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~  101 (293)
                      ++|+++++.|+.+..++  .|.+++.....  ..... .+.. ....+..++++|+++.+++ +..++.|..||..++..
T Consensus       176 ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~--~~~~~g~~~~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~~  252 (409)
T 3hrp_A          176 PAVTKDKQRVYSIGWEGTHTVYVYMKASGW--APTRIGQLGSTFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQEV  252 (409)
T ss_dssp             CEECTTSSEEEEEBSSTTCEEEEEEGGGTT--CEEEEEECCTTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTTCCE
T ss_pred             eeEecCCCcEEEEecCCCceEEEEEcCCCc--eeEEeeeccchhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCCCCE
Confidence            89999999998888876  67777765322  11111 1112 3455678899986555554 67788999999987653


Q ss_pred             eee----eeec-C-ceE-EEEEcCC-CCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCE
Q 022716          102 SQQ----AELS-G-ENI-NITYKPD-GTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGC  173 (293)
Q Consensus       102 ~~~----~~~~-~-~~~-~~~~~~~-~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  173 (293)
                      ...    .... . .+. .++++|+ +..+++....++|..||....... ...... ...  +   ..-......-...
T Consensus       253 ~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~~~-~~g~~~-~~g--~---~dg~~~~~~~~~P  325 (409)
T 3hrp_A          253 TLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGECEW-FCGSAT-QKT--V---QDGLREEALFAQP  325 (409)
T ss_dssp             EEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEE-EEECTT-CCS--C---BCEEGGGCBCSSE
T ss_pred             EEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCCEEE-EEeCCC-CCC--c---CCCcccccEeCCC
Confidence            322    1111 1 124 8999995 555555556788999887543110 000000 000  0   0000000001235


Q ss_pred             EEEEECCCCCEEEEec-CCCcEEEEeCCCCEEEEEeecc---------------CCCeeEEEEccCCCEEEEecCCCcEE
Q 022716          174 YCIAIDPMGRYFAVGS-ADSLVSLWDISEMLCVRTFTKL---------------EWPVRTISFSHTGDYIASASEDLFID  237 (293)
Q Consensus       174 ~~~~~~~~~~~l~~gs-~d~~i~iwd~~~~~~~~~~~~~---------------~~~v~~l~~sp~~~~l~s~s~d~~i~  237 (293)
                      ..++++|+++++++-+ .++.|+.|++.++.. .++.++               -.....++++|+|.++++...++.|+
T Consensus       326 ~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v-~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir  404 (409)
T 3hrp_A          326 NGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV-STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIR  404 (409)
T ss_dssp             EEEEECTTCCEEEEETTTTCEEEEEETTTTEE-EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEE
T ss_pred             eEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE-EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEE
Confidence            7899999999888888 899999999877763 444443               13578999999988888888888887


Q ss_pred             EEEc
Q 022716          238 ISNV  241 (293)
Q Consensus       238 iw~~  241 (293)
                      .+++
T Consensus       405 ~i~~  408 (409)
T 3hrp_A          405 KYAV  408 (409)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            7654

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.18  E-value=3.4e-08  Score=78.43  Aligned_cols=180  Identities=16%  Similarity=0.205  Sum_probs=128.8

Q ss_pred             CeeEEEEcCCCCCEEEEEeCCC--eEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEe-CCCeEEEEEccccceee
Q 022716           68 SVDQLCWDPKHADLIATASGDK--TVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGN-RDDELTILDVRKFKPIH  144 (293)
Q Consensus        68 ~i~~~~~~~~~~~~l~s~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~l~d~~~~~~~~  144 (293)
                      ....+.|+ + ..++.|.+.+|  .|+++|+++++.................+++..|.... .++.+.++|.++.+.+.
T Consensus        44 ftqGL~~~-~-~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~  121 (262)
T 3nol_A           44 FTEGFFYR-N-GYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVR  121 (262)
T ss_dssp             EEEEEEEE-T-TEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEE
T ss_pred             ccceEEEE-C-CEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEE
Confidence            35677776 3 46777888766  89999999999888877766554433344455655555 58899999999988777


Q ss_pred             eecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccC-----CCeeEEE
Q 022716          145 RRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLE-----WPVRTIS  219 (293)
Q Consensus       145 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~-----~~v~~l~  219 (293)
                      +...+.+-.                       .+.+++..|..++.++.|.++|.++++.+..+.-..     ..++.+.
T Consensus       122 ti~~~~eG~-----------------------glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe  178 (262)
T 3nol_A          122 SFNYDGEGW-----------------------GLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELE  178 (262)
T ss_dssp             EEECSSCCC-----------------------CEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEE
T ss_pred             EEECCCCce-----------------------EEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeE
Confidence            655432111                       122456666666667889999999988777664321     2356688


Q ss_pred             EccCCCEEEEecCCCcEEEEEcCCCCEEEEEecC-------------CCcceeEECCCCCeEEEEEc
Q 022716          220 FSHTGDYIASASEDLFIDISNVHTGRTVHQIPCR-------------AAMNSVEWNPKYNLLAYAGD  273 (293)
Q Consensus       220 ~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~-------------~~i~~~~~sp~~~~la~~~~  273 (293)
                      +. +|+..|..-.+..|.+.|.++++.+..+...             .-.+.|+|+|+.+.|..+|.
T Consensus       179 ~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          179 WV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             EE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             EE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence            76 7876666667889999999999998887642             13478999999988888875

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.18  E-value=3.1e-08  Score=79.45  Aligned_cols=182  Identities=12%  Similarity=0.127  Sum_probs=126.2

Q ss_pred             CeeEEEEcCCCCCEEEEEeC--CCeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEe-CCCeEEEEEccccceee
Q 022716           68 SVDQLCWDPKHADLIATASG--DKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGN-RDDELTILDVRKFKPIH  144 (293)
Q Consensus        68 ~i~~~~~~~~~~~~l~s~~~--d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~l~d~~~~~~~~  144 (293)
                      ....+.++++ +.++++.+.  ++.|++.|+.+++...............+.++++.|.... .++.+.++|..+.+.+.
T Consensus        22 f~~Gl~~~~d-g~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v~~  100 (266)
T 2iwa_A           22 FTQGLVYAEN-DTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIK  100 (266)
T ss_dssp             CEEEEEECST-TEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETTTTEEEE
T ss_pred             CcccEEEeCC-CeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECCCCcEEE
Confidence            3568889886 455555543  6899999999999887776555433333333455665555 57899999999877766


Q ss_pred             eecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccC-----CCeeEEE
Q 022716          145 RRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLE-----WPVRTIS  219 (293)
Q Consensus       145 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~-----~~v~~l~  219 (293)
                      ....+ .       +.+              ..+.++++.+.++..++.|.++|.++.+.+..+.--.     ..++.+.
T Consensus       101 ~i~~g-~-------~~g--------------~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele  158 (266)
T 2iwa_A          101 NFTHQ-M-------KDG--------------WGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELE  158 (266)
T ss_dssp             EEECC-S-------SSC--------------CEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEE
T ss_pred             EEECC-C-------CCe--------------EEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEE
Confidence            54432 0       000              1233566656566678899999999988777665321     2367888


Q ss_pred             EccCCCEEEEecCCCcEEEEEcCCCCEEEEEecC--------------CCcceeEECCCCCeEEEEEc
Q 022716          220 FSHTGDYIASASEDLFIDISNVHTGRTVHQIPCR--------------AAMNSVEWNPKYNLLAYAGD  273 (293)
Q Consensus       220 ~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~--------------~~i~~~~~sp~~~~la~~~~  273 (293)
                      |. +|+..+....++.|.+-|.++++.+..+...              .-.+.|+|+|+++.|..++.
T Consensus       159 ~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk  225 (266)
T 2iwa_A          159 YI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGK  225 (266)
T ss_dssp             EE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEET
T ss_pred             EE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECC
Confidence            88 7766666667889999999999998887643              13478999999987766664

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.17  E-value=4.7e-09  Score=88.62  Aligned_cols=238  Identities=8%  Similarity=-0.124  Sum_probs=142.4

Q ss_pred             EEEEeCCC----cEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEe---------CCCeEEEEeCCCCee
Q 022716           35 LASGSVDQ----TARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATAS---------GDKTVRLWDARSGKC  101 (293)
Q Consensus        35 l~s~~~dg----~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~---------~d~~i~vwd~~~~~~  101 (293)
                      .++...++    +|.+.|.+...  ....+. .+.. +  .+.++|++..++++..         .++.|.+||..+++.
T Consensus        35 yV~~~~~~~~~d~vsvID~~t~~--v~~~i~-vG~~-P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~v  108 (368)
T 1mda_H           35 HITLPAYFAGTTENWVSCAGCGV--TLGHSL-GAFL-S--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP  108 (368)
T ss_dssp             EEEECTTTCSSEEEEEEETTTTE--EEEEEE-ECTT-C--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE
T ss_pred             EEECCccCCccceEEEEECCCCe--EEEEEe-CCCC-C--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCE
Confidence            34444455    77788887532  222222 2333 4  6899998766655542         378899999999998


Q ss_pred             eeeeeec--------CceEEEEEcCCCCEEEEEeC--CCeEEE--EEccccceeeeeccccee--------eeeEEecCC
Q 022716          102 SQQAELS--------GENINITYKPDGTHIAVGNR--DDELTI--LDVRKFKPIHRRKFGYEV--------NEIAWNMTG  161 (293)
Q Consensus       102 ~~~~~~~--------~~~~~~~~~~~~~~l~~~~~--d~~i~l--~d~~~~~~~~~~~~~~~~--------~~v~~~~~~  161 (293)
                      ...+...        ..+..++++|||++++++..  ++.+.+  +|+.+   ......+...        .-+...+++
T Consensus       109 v~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg  185 (368)
T 1mda_H          109 IADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPA  185 (368)
T ss_dssp             EEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTT
T ss_pred             EEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCC
Confidence            8887665        24567999999999998874  467888  89876   2222211100        001122222


Q ss_pred             CEEEEecCC--------------------CCEEEEEECCCCCEEEEecCCCcEEEEeCCCC--EEEEEeec-------cC
Q 022716          162 EMFFLTTGN--------------------AGCYCIAIDPMGRYFAVGSADSLVSLWDISEM--LCVRTFTK-------LE  212 (293)
Q Consensus       162 ~~~~~~~~~--------------------~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~--~~~~~~~~-------~~  212 (293)
                      ....+....                    .+.   + .+++..++..+. +.+.+.|....  ..+..+.-       +.
T Consensus       186 ~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~  260 (368)
T 1mda_H          186 SLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADN  260 (368)
T ss_dssp             SCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTT
T ss_pred             CEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccc
Confidence            222222211                    111   2 445555555555 88999998643  22222210       11


Q ss_pred             ---CCeeEEEEccCCCEEEEecC---------CCcEEEEEcCCCCEEEEEecCCCcceeEECCCCCe-EEEEE-cCCCCC
Q 022716          213 ---WPVRTISFSHTGDYIASASE---------DLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNL-LAYAG-DDKNKY  278 (293)
Q Consensus       213 ---~~v~~l~~sp~~~~l~s~s~---------d~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~-la~~~-~d~~~~  278 (293)
                         .....++|+|+++.++.+..         +..+.++|..+++.+..++.......++|+|++++ +++.. .++.+.
T Consensus       261 ~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~Vs  340 (368)
T 1mda_H          261 FRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLD  340 (368)
T ss_dssp             EEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEE
T ss_pred             cccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEE
Confidence               11222789999988765432         23456999999999888876667889999999985 45554 365555


Q ss_pred             CCCcceEE
Q 022716          279 QADEGVFR  286 (293)
Q Consensus       279 ~~~~~~~~  286 (293)
                      ..|..+.|
T Consensus       341 VID~~t~k  348 (368)
T 1mda_H          341 IYDAASDQ  348 (368)
T ss_dssp             EEESSSCE
T ss_pred             EEECCCCc
Confidence            55544433

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.16  E-value=2.1e-08  Score=79.59  Aligned_cols=180  Identities=11%  Similarity=0.054  Sum_probs=127.9

Q ss_pred             CCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEE-EeCCCeEEEEEccccceeee
Q 022716           67 DSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAV-GNRDDELTILDVRKFKPIHR  145 (293)
Q Consensus        67 ~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~d~~i~l~d~~~~~~~~~  145 (293)
                      .....+.|..  ..++++.+.++.|+++|+++++..... ...........++++.|.. .-.++.+.++|.++.+.+.+
T Consensus        55 ~ftqGL~~~~--~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~t  131 (268)
T 3nok_A           55 AFTQGLVFHQ--GHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERT  131 (268)
T ss_dssp             CCEEEEEEET--TEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEE
T ss_pred             cccceEEEEC--CEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEE
Confidence            3356777763  568888899999999999999887777 6665444223334444444 44688999999999887776


Q ss_pred             ecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccC-----CCeeEEEE
Q 022716          146 RKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLE-----WPVRTISF  220 (293)
Q Consensus       146 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~-----~~v~~l~~  220 (293)
                      ...+.+-.                     .+  .++++.|..+..++.|.++|.++++.+.++.-..     ..++.+.|
T Consensus       132 i~~~~eGw---------------------GL--t~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~  188 (268)
T 3nok_A          132 TRYSGEGW---------------------GL--CYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELEC  188 (268)
T ss_dssp             EECSSCCC---------------------CE--EEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEE
T ss_pred             EeCCCcee---------------------EE--ecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEE
Confidence            55432111                     12  2456777767778899999999988777665322     24577887


Q ss_pred             ccCCCEEEEecCCCcEEEEEcCCCCEEEEEecC--------------CCcceeEECCCCCeEEEEEc
Q 022716          221 SHTGDYIASASEDLFIDISNVHTGRTVHQIPCR--------------AAMNSVEWNPKYNLLAYAGD  273 (293)
Q Consensus       221 sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~--------------~~i~~~~~sp~~~~la~~~~  273 (293)
                      . +|+..|..-.+..|.+-|.++++.+..+...              .-.|.|+|+|+++.|..+|.
T Consensus       189 ~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK  254 (268)
T 3nok_A          189 A-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK  254 (268)
T ss_dssp             E-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred             e-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence            6 7876666667889999999999998877542              13478999998887777764

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.11  E-value=1.1e-07  Score=74.78  Aligned_cols=181  Identities=14%  Similarity=0.177  Sum_probs=127.1

Q ss_pred             CCeeEEEEcCCCCCEEEEEeCC--CeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEE-eCCCeEEEEEcccccee
Q 022716           67 DSVDQLCWDPKHADLIATASGD--KTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVG-NRDDELTILDVRKFKPI  143 (293)
Q Consensus        67 ~~i~~~~~~~~~~~~l~s~~~d--~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~d~~i~l~d~~~~~~~  143 (293)
                      .....+.|++  ..++.|.+.+  +.|+++|+.+++.................+.+..|... -.++.+.++|.++.+.+
T Consensus        21 ~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~   98 (243)
T 3mbr_X           21 AFTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPR   98 (243)
T ss_dssp             CCEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEE
T ss_pred             cccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEE
Confidence            3466888875  4577777775  48999999999988887776665443333344555444 46889999999998877


Q ss_pred             eeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccC-----CCeeEE
Q 022716          144 HRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLE-----WPVRTI  218 (293)
Q Consensus       144 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~-----~~v~~l  218 (293)
                      .+...+.+-                     ..++  +++..|..+..++.|.++|.++.+.+.++.-..     ..++.+
T Consensus        99 ~ti~~~~~G---------------------wglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeL  155 (243)
T 3mbr_X           99 ARFRYPGEG---------------------WALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNEL  155 (243)
T ss_dssp             EEEECSSCC---------------------CEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEE
T ss_pred             EEEeCCCCc---------------------eEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceee
Confidence            765543211                     1222  455555556668899999999988777665322     245677


Q ss_pred             EEccCCCEEEEecCCCcEEEEEcCCCCEEEEEecC--------------CCcceeEECCCCCeEEEEEc
Q 022716          219 SFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCR--------------AAMNSVEWNPKYNLLAYAGD  273 (293)
Q Consensus       219 ~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~--------------~~i~~~~~sp~~~~la~~~~  273 (293)
                      .+. +|+..|..-.+..|.+.|.++++.+..+...              .-.|.|+|+|+++.|..+|.
T Consensus       156 e~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          156 EWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             EEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             EEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence            765 7776666667789999999999998877532              12477999999888888874

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.11  E-value=4.3e-08  Score=81.63  Aligned_cols=187  Identities=12%  Similarity=0.039  Sum_probs=115.8

Q ss_pred             cccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEE-ee-CC-cCCeeEEEEcCCCCCEEEEEeC------CCe
Q 022716           20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIE-LR-GH-ADSVDQLCWDPKHADLIATASG------DKT   90 (293)
Q Consensus        20 ~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~-~~-~h-~~~i~~~~~~~~~~~~l~s~~~------d~~   90 (293)
                      ...+.+++|+++|+++++. .+ .|.+||....   ....+. .. +. ...++.+.+.|++ .++++...      .+.
T Consensus        89 ~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g---~~~~~~~~~~~~~~~~~~~i~~d~~G-~l~v~~~~~~~~~~~~~  162 (326)
T 2ghs_A           89 PFMGSALAKISDSKQLIAS-DD-GLFLRDTATG---VLTLHAELESDLPGNRSNDGRMHPSG-ALWIGTMGRKAETGAGS  162 (326)
T ss_dssp             SSCEEEEEEEETTEEEEEE-TT-EEEEEETTTC---CEEEEECSSTTCTTEEEEEEEECTTS-CEEEEEEETTCCTTCEE
T ss_pred             CCcceEEEEeCCCeEEEEE-CC-CEEEEECCCC---cEEEEeeCCCCCCCCCCCCEEECCCC-CEEEEeCCCcCCCCceE
Confidence            4579999999999877754 34 4888887543   222111 11 11 2357889999875 46655432      244


Q ss_pred             EEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEE-eCCCeEEEEEcc--cc-ceeeeecccceeeeeEEecCCCEEEE
Q 022716           91 VRLWDARSGKCSQQAELSGENINITYKPDGTHIAVG-NRDDELTILDVR--KF-KPIHRRKFGYEVNEIAWNMTGEMFFL  166 (293)
Q Consensus        91 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~d~~i~l~d~~--~~-~~~~~~~~~~~~~~v~~~~~~~~~~~  166 (293)
                      |..++  +++.............++|+|+++.++.+ +.++.|.+||+.  +. .......       + ..       +
T Consensus       163 l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~-------~-~~-------~  225 (326)
T 2ghs_A          163 IYHVA--KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEV-------F-ID-------S  225 (326)
T ss_dssp             EEEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEE-------E-EE-------C
T ss_pred             EEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceE-------E-EE-------C
Confidence            55555  45443322223345678999999877555 456899999975  32 2110000       0 00       0


Q ss_pred             ecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEc-cCCCEEEEe
Q 022716          167 TTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFS-HTGDYIASA  230 (293)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s-p~~~~l~s~  230 (293)
                      ......+..++++++|++.++...++.|..||. +++.+..+......+.+++|+ |+++.|+.+
T Consensus       226 ~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt  289 (326)
T 2ghs_A          226 TGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVT  289 (326)
T ss_dssp             TTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEE
T ss_pred             CCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCEEEEE
Confidence            001223456888999998887767789999998 566666666666679999998 888766443

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.10  E-value=2.4e-11  Score=103.22  Aligned_cols=187  Identities=11%  Similarity=0.068  Sum_probs=100.4

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEe
Q 022716           79 ADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWN  158 (293)
Q Consensus        79 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~  158 (293)
                      ...+++++.|+.|..||..+++.+..... +.+.+..+.++++.+++++.|+.+..||.++.+.+........  ..   
T Consensus         9 ~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~--~~---   82 (369)
T 2hz6_A            9 ETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIP--EL---   82 (369)
T ss_dssp             TTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHH--HH---
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEEEecC-CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCc--cc---
Confidence            35788999999999999999998776665 4444444556777888888999999999977654433221100  00   


Q ss_pred             cCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEE
Q 022716          159 MTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDI  238 (293)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~i  238 (293)
                               ....++    + ..+..+++|+.|+.|..||.++++.+-.+..+.    ...++|++..+++++.|+.|+.
T Consensus        83 ---------~~~sp~----~-~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a  144 (369)
T 2hz6_A           83 ---------VQASPC----R-SSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITM  144 (369)
T ss_dssp             ---------HTTCSC----C------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEEC
T ss_pred             ---------cccCce----E-ecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEE
Confidence                     000000    0 134567778889999999999998776654433    2456788899999999999999


Q ss_pred             EEcCCCCEEEEEecCCCcceeEECCCC---CeEEEEEcCCCCCCCCc--ceEEEEeee
Q 022716          239 SNVHTGRTVHQIPCRAAMNSVEWNPKY---NLLAYAGDDKNKYQADE--GVFRIYGFE  291 (293)
Q Consensus       239 w~~~~~~~~~~~~~~~~i~~~~~sp~~---~~la~~~~d~~~~~~~~--~~~~~~~~~  291 (293)
                      ||..+|+.+..+.... .....++++.   ..+.+++.|+.++.++-  |. .+|.++
T Consensus       145 ~d~~tG~~~W~~~~~~-~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~-~~W~~~  200 (369)
T 2hz6_A          145 YDTKTRELRWNATYFD-YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGD-VLWIQN  200 (369)
T ss_dssp             CCSSSSSCCCEEEEEE-ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCC-EEEEEE
T ss_pred             EECCCCCEEEeEeccc-ccCccccCCccccceEEEECCCCEEEEEECCCCc-EEEEec
Confidence            9999998654443211 2233344432   45667777877776654  33 356553

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.09  E-value=1.4e-07  Score=75.69  Aligned_cols=209  Identities=10%  Similarity=0.002  Sum_probs=136.4

Q ss_pred             ceeecCcc--ccEEEEEECCCCCeEEEEeC--CCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCC
Q 022716           13 SREYTGHK--KKVHSVAWNCTGTKLASGSV--DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD   88 (293)
Q Consensus        13 ~~~~~~h~--~~v~~l~~s~~~~~l~s~~~--dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d   88 (293)
                      .+++ .|.  .....++|++++...++.+.  ++.|++.|+....  ....+.+..+. ....+++.  +..++++.-.+
T Consensus        12 v~~~-p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~--v~~~i~l~~~~-fgeGi~~~--g~~lyv~t~~~   85 (266)
T 2iwa_A           12 LNEF-PHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGK--VENIHKMDDSY-FGEGLTLL--NEKLYQVVWLK   85 (266)
T ss_dssp             EEEE-ECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCC--EEEEEECCTTC-CEEEEEEE--TTEEEEEETTC
T ss_pred             EEEE-ECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCC--EEEEEecCCCc-ceEEEEEe--CCEEEEEEecC
Confidence            3444 354  34689999998755555554  6899999997542  22233333321 22344444  34566666668


Q ss_pred             CeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEec
Q 022716           89 KTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTT  168 (293)
Q Consensus        89 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  168 (293)
                      +.+.++|..+.+.+..+... ....+.+++||+.++++..++++.++|.++.+.......+..-+.              
T Consensus        86 ~~v~viD~~t~~v~~~i~~g-~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p--------------  150 (266)
T 2iwa_A           86 NIGFIYDRRTLSNIKNFTHQ-MKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHR--------------  150 (266)
T ss_dssp             SEEEEEETTTTEEEEEEECC-SSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEE--------------
T ss_pred             CEEEEEECCCCcEEEEEECC-CCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcc--------------
Confidence            99999999998888777655 222345667888888877889999999998776665443211000              


Q ss_pred             CCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeecc-------------CCCeeEEEEccCCC-EEEEecCCC
Q 022716          169 GNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL-------------EWPVRTISFSHTGD-YIASASEDL  234 (293)
Q Consensus       169 ~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~-------------~~~v~~l~~sp~~~-~l~s~s~d~  234 (293)
                       -.....+.+. ++..++....++.|.+.|.++++.+..+.-.             ....+.|+|+|+++ .++++....
T Consensus       151 -~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~  228 (266)
T 2iwa_A          151 -VIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWP  228 (266)
T ss_dssp             -CCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCS
T ss_pred             -cccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCC
Confidence             0012233444 5655666666789999999999888776421             12468999999986 557777888


Q ss_pred             cEEEEEcCCC
Q 022716          235 FIDISNVHTG  244 (293)
Q Consensus       235 ~i~iw~~~~~  244 (293)
                      .+...++.+.
T Consensus       229 ~v~~i~l~~~  238 (266)
T 2iwa_A          229 KLFEIKLHLV  238 (266)
T ss_dssp             EEEEEEEEEC
T ss_pred             eEEEEEEecc
Confidence            8888887553

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.09  E-value=1.8e-08  Score=85.10  Aligned_cols=227  Identities=14%  Similarity=0.035  Sum_probs=133.7

Q ss_pred             EEEECCCCCeEEEEe----------CCCcEEEeecCCCCCCceeEEEeeCCc-----CCeeEEEEcCCCCCEEEEEeC-C
Q 022716           25 SVAWNCTGTKLASGS----------VDQTARVWHIEPHGHGKVKDIELRGHA-----DSVDQLCWDPKHADLIATASG-D   88 (293)
Q Consensus        25 ~l~~s~~~~~l~s~~----------~dg~v~iw~~~~~~~~~~~~~~~~~h~-----~~i~~~~~~~~~~~~l~s~~~-d   88 (293)
                      .++++||++++..+.          .++.|.+||.....  ....+.+.+..     .....+.++|++..++++-.. +
T Consensus        69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~--vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~  146 (368)
T 1mda_H           69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFL--PIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSS  146 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCC--EEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSS
T ss_pred             ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCC--EEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCC
Confidence            699999999998776          37899999997642  23333332100     123467889986554443323 4


Q ss_pred             CeEEE--EeCCCCeeeeeeeecCceEEEEEcCCCC-EEEEEeCCCeEEEEEccc-----cceee----eecccceeeeeE
Q 022716           89 KTVRL--WDARSGKCSQQAELSGENINITYKPDGT-HIAVGNRDDELTILDVRK-----FKPIH----RRKFGYEVNEIA  156 (293)
Q Consensus        89 ~~i~v--wd~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~l~d~~~-----~~~~~----~~~~~~~~~~v~  156 (293)
                      ..+.+  +|..+   ...+...+.   ....|+++ .+++.+.|+++...|+..     .+...    ....+....  .
T Consensus       147 ~~v~V~~iD~~t---v~~i~v~~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~--~  218 (368)
T 1mda_H          147 AAAGLSVPGASD---DQLTKSASC---FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA--Q  218 (368)
T ss_dssp             CEEEEEETTTEE---EEEEECSSC---CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE--E
T ss_pred             CeEEEEEEchhh---ceEEECCCc---eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc--c
Confidence            66888  88866   333332221   11224332 334445566766677654     21110    000000000  1


Q ss_pred             EecCCCEEEEecC---------C-----------------------CCEEEEEECCCCCEEEEecC---------CCcEE
Q 022716          157 WNMTGEMFFLTTG---------N-----------------------AGCYCIAIDPMGRYFAVGSA---------DSLVS  195 (293)
Q Consensus       157 ~~~~~~~~~~~~~---------~-----------------------~~~~~~~~~~~~~~l~~gs~---------d~~i~  195 (293)
                       .+.+..++....         .                       .....++++|+++.+.++..         ++.+.
T Consensus       219 -~~~~~~~~~vs~~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~  297 (368)
T 1mda_H          219 -ANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTS  297 (368)
T ss_dssp             -ETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEE
T ss_pred             -cccCCEEEEEcCCEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEE
Confidence             111111111000         0                       00011678999887766532         23567


Q ss_pred             EEeCCCCEEEEEeeccCCCeeEEEEccCCC-EEEEec-CCCcEEEEEcCCCCEEEEEecCCCcceeEECC
Q 022716          196 LWDISEMLCVRTFTKLEWPVRTISFSHTGD-YIASAS-EDLFIDISNVHTGRTVHQIPCRAAMNSVEWNP  263 (293)
Q Consensus       196 iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~-~l~s~s-~d~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp  263 (293)
                      ++|+.+.+.+..+.... ....++|+|||+ .+++.. .++.|.++|..+++.+..++....-..+++.+
T Consensus       298 ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~P~~i~~~~  366 (368)
T 1mda_H          298 SVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGPESLSVQN  366 (368)
T ss_dssp             EEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCCCEEECCC
T ss_pred             EEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCCCCEEEeec
Confidence            99999998887765433 688999999998 456666 59999999999999999888666667777765

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.07  E-value=1.2e-08  Score=85.64  Aligned_cols=205  Identities=11%  Similarity=0.055  Sum_probs=125.8

Q ss_pred             CccccEEEEEECCCCCeEEEEeC-----CCcEEEeecCCCCCCceeEEEee----CCcCCeeEEEEcCCCCCEEEEEe--
Q 022716           18 GHKKKVHSVAWNCTGTKLASGSV-----DQTARVWHIEPHGHGKVKDIELR----GHADSVDQLCWDPKHADLIATAS--   86 (293)
Q Consensus        18 ~h~~~v~~l~~s~~~~~l~s~~~-----dg~v~iw~~~~~~~~~~~~~~~~----~h~~~i~~~~~~~~~~~~l~s~~--   86 (293)
                      +|-..+..++++++|+..++-..     ++.|.+||+....  ....+.+.    .+......+++.++++..+++-.  
T Consensus        64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~--~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~  141 (343)
T 2qe8_A           64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQ--LSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAP  141 (343)
T ss_dssp             CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTE--EEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCS
T ss_pred             cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCe--EEEEEECChhhcccccccceEEEecCCCEEEEEcCcc
Confidence            46678999999999876665443     5789999986431  12223332    12234678888876555566665  


Q ss_pred             -CCCeEEEEeCCCCeeeeeeee------------------------------cCceEEEEEcCCCCEEEEEeCCC-eEEE
Q 022716           87 -GDKTVRLWDARSGKCSQQAEL------------------------------SGENINITYKPDGTHIAVGNRDD-ELTI  134 (293)
Q Consensus        87 -~d~~i~vwd~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~l~~~~~d~-~i~l  134 (293)
                       .++.|.+||..+++.......                              ...+..++++|+|+.|+++..++ .+..
T Consensus       142 ~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~  221 (343)
T 2qe8_A          142 DDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYR  221 (343)
T ss_dssp             GGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEE
T ss_pred             CCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEE
Confidence             688999999987754332211                              01245689999999888887665 4444


Q ss_pred             EEccccce--eeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeec-c
Q 022716          135 LDVRKFKP--IHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK-L  211 (293)
Q Consensus       135 ~d~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~-~  211 (293)
                      ++......  .........+..           . ........++++++|+++++...++.|.+||.++++....... .
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~-----------~-g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~  289 (343)
T 2qe8_A          222 IKSADLSNLQLTDAELGSKIER-----------Y-SEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEK  289 (343)
T ss_dssp             EEHHHHTCTTCCHHHHHTTCEE-----------E-EECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGG
T ss_pred             EEHHHhcCCCCChhhhhcceEe-----------c-ccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCc
Confidence            44321000  000000000000           0 0011223478899999999999999999999856653322222 1


Q ss_pred             CCCeeEEEEccCCCEEEEecCCCcE
Q 022716          212 EWPVRTISFSHTGDYIASASEDLFI  236 (293)
Q Consensus       212 ~~~v~~l~~sp~~~~l~s~s~d~~i  236 (293)
                      ...+.+++|.++++++++.+..+.+
T Consensus       290 ~~~p~~va~~~~g~l~v~~~~~~~~  314 (343)
T 2qe8_A          290 LSWTDSFNFGSDGYLYFDCNQLHHS  314 (343)
T ss_dssp             GSCEEEEEECTTSCEEEEECCGGGS
T ss_pred             eecCCeeEECCCCcEEEEeCccccc
Confidence            3468999999999888887765544

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.07  E-value=1.4e-06  Score=70.17  Aligned_cols=220  Identities=6%  Similarity=-0.013  Sum_probs=136.0

Q ss_pred             ccEEEEEECCCCCeEE-EEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCC
Q 022716           21 KKVHSVAWNCTGTKLA-SGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG   99 (293)
Q Consensus        21 ~~v~~l~~s~~~~~l~-s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~   99 (293)
                      ..+..++|++++..|. +-..++.|..++++...   .. ............+++.+.+..++++-...+.|.+++.+..
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~---~~-~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~  111 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE---PT-TIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGT  111 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCC---CE-EEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCC---cE-EEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCC
Confidence            4578999999776665 44457899999886422   11 1122222456788888866666666667889999998654


Q ss_pred             eeeeeeeec-CceEEEEEcCCCCEEEEEeC---CCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEE
Q 022716          100 KCSQQAELS-GENINITYKPDGTHIAVGNR---DDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYC  175 (293)
Q Consensus       100 ~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~---d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  175 (293)
                      ......... ..+..++++|++..|..+..   .+.|..+++..... .                   .+....-.....
T Consensus       112 ~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~-~-------------------~~~~~~~~~P~g  171 (267)
T 1npe_A          112 QRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR-R-------------------ILAQDNLGLPNG  171 (267)
T ss_dssp             SCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC-E-------------------EEECTTCSCEEE
T ss_pred             CEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc-E-------------------EEEECCCCCCcE
Confidence            322222222 45678999997666555543   35777777643211 0                   001111234567


Q ss_pred             EEECCCCCE-EEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEecCC
Q 022716          176 IAIDPMGRY-FAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRA  254 (293)
Q Consensus       176 ~~~~~~~~~-l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~  254 (293)
                      ++++|++.. +++-...+.|..+|.........+... .....++.. .+...++....+.|..+|..+++.+..+....
T Consensus       172 ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~-~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~  249 (267)
T 1npe_A          172 LTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGL-QYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHK  249 (267)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECC-CSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECCSS
T ss_pred             EEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCC-CCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEEcccc
Confidence            888887654 455566788999998754433333322 334566653 34444555567889999999998888776432


Q ss_pred             --CcceeEECCCCC
Q 022716          255 --AMNSVEWNPKYN  266 (293)
Q Consensus       255 --~i~~~~~sp~~~  266 (293)
                        ....+++.|++.
T Consensus       250 ~~~p~gi~~~~~~~  263 (267)
T 1npe_A          250 QTRLYGITIALSQC  263 (267)
T ss_dssp             CCCCCCEEEECSCC
T ss_pred             ccccceeeecCccC
Confidence              366788888763

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.07  E-value=7.1e-11  Score=100.33  Aligned_cols=202  Identities=8%  Similarity=0.046  Sum_probs=110.5

Q ss_pred             CCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeeeecCc
Q 022716           31 TGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGE  110 (293)
Q Consensus        31 ~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~  110 (293)
                      ++..+++++.||.|+.||..+..  ......  .  ..+.+..+..+ +.++++++.|+.+..||..+++.+........
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~--~~W~~~--~--~~~~s~p~~~~-g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~   80 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGS--IKWTLK--E--DPVLQVPTHVE-EPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIP   80 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCC--EEEEEE--C--CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSCCHH
T ss_pred             eCCEEEEEcCCCEEEEEECCCCC--EEEEec--C--CCceecceEcC-CCEEEEeCCCCEEEEEECCCCceeeeeeccCc
Confidence            57789999999999999987532  222222  2  23333333333 34677778999999999988876544332211


Q ss_pred             --eE-EEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEE
Q 022716          111 --NI-NITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAV  187 (293)
Q Consensus       111 --~~-~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  187 (293)
                        .. +..+. ++..+++++.++.+..||.++.+.......+.                        ...+.|++..+++
T Consensus        81 ~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~------------------------~~~~~p~~~~v~~  135 (369)
T 2hz6_A           81 ELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF------------------------ADSLSPSTSLLYL  135 (369)
T ss_dssp             HHHTTCSCC------CCCCEEEEEEEEECCC----------------------------------------------EEE
T ss_pred             cccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC------------------------cccccccCCEEEE
Confidence              10 11111 34567788889999999998766543221110                        1223457888899


Q ss_pred             ecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCC---CEEEEecCCCcEEEEEcCCCCEEEEEecCCCcce-eEECC
Q 022716          188 GSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTG---DYIASASEDLFIDISNVHTGRTVHQIPCRAAMNS-VEWNP  263 (293)
Q Consensus       188 gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~---~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~i~~-~~~sp  263 (293)
                      ++.|+.|+.||.++++.+-.+....  .....++++.   ..++.++.|+.++.||..+|+.+.......++.. ..+++
T Consensus       136 ~~~dg~v~a~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv~~~~~~~~  213 (369)
T 2hz6_A          136 GRTEYTITMYDTKTRELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPVVAFYVWQR  213 (369)
T ss_dssp             EEEEEEEECCCSSSSSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSCEEEEEECTT
T ss_pred             EecCCEEEEEECCCCCEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCCCceEEEEEecC
Confidence            9999999999998876543332111  1222333332   5677788999999999999998887776666544 34566


Q ss_pred             CCC
Q 022716          264 KYN  266 (293)
Q Consensus       264 ~~~  266 (293)
                      ++.
T Consensus       214 dg~  216 (369)
T 2hz6_A          214 EGL  216 (369)
T ss_dssp             SSC
T ss_pred             Cce
Confidence            664

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.02  E-value=4.8e-08  Score=89.79  Aligned_cols=189  Identities=12%  Similarity=0.047  Sum_probs=117.8

Q ss_pred             CCcCCeeEEEEcCCCCCEEEEEeC----CCeEEEEeCCCCeeeeeeeecCc-eEEEEEcCCCCEEEEEeCCC--------
Q 022716           64 GHADSVDQLCWDPKHADLIATASG----DKTVRLWDARSGKCSQQAELSGE-NINITYKPDGTHIAVGNRDD--------  130 (293)
Q Consensus        64 ~h~~~i~~~~~~~~~~~~l~s~~~----d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~d~--------  130 (293)
                      +|...+..+.|+|++..++++.+.    +..|++||+.+++.+.. ..... ...++|+ ||+.|+.++.+.        
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~  203 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-PLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSA  203 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-EEEEEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-ccCCceeccEEEe-CCCEEEEEEecCcccccccc
Confidence            345567888999986545554433    35699999999886543 22222 3467899 999999988774        


Q ss_pred             -----eEEEEEccccceeeeecccceeeeeEEecCCCEEEEecC---CCCEEEEEECCCCCEEEEec----CCCcEEEEe
Q 022716          131 -----ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG---NAGCYCIAIDPMGRYFAVGS----ADSLVSLWD  198 (293)
Q Consensus       131 -----~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~gs----~d~~i~iwd  198 (293)
                           .|.+|++.+......                  .+....   ......+.++|++++|+...    .++.|+++|
T Consensus       204 ~~~~~~v~~~~lgt~~~~~~------------------~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d  265 (693)
T 3iuj_A          204 RTDQHKVYFHRLGTAQEDDR------------------LVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKD  265 (693)
T ss_dssp             -CCCCEEEEEETTSCGGGCE------------------EEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEE
T ss_pred             cCCCcEEEEEECCCCcccce------------------EEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEE
Confidence                 377777765332111                  111111   12245678899999875443    235899999


Q ss_pred             CCCCE-EEEEeeccCCCeeEEEEccCCCEEE-EecCC---CcEEEEEcCCCCE---EEEEecCCCcceeEECCCCCeEEE
Q 022716          199 ISEML-CVRTFTKLEWPVRTISFSHTGDYIA-SASED---LFIDISNVHTGRT---VHQIPCRAAMNSVEWNPKYNLLAY  270 (293)
Q Consensus       199 ~~~~~-~~~~~~~~~~~v~~l~~sp~~~~l~-s~s~d---~~i~iw~~~~~~~---~~~~~~~~~i~~~~~sp~~~~la~  270 (293)
                      +.++. ....+..+....... ++++|..|+ ....|   +.|..+++.++..   ....++...+.  .|+|++++|+.
T Consensus       266 ~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~  342 (693)
T 3iuj_A          266 LSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFA  342 (693)
T ss_dssp             TTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEE
T ss_pred             CCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEE
Confidence            87652 234455555555554 667766554 44343   5689999987654   23344444443  99999999888


Q ss_pred             EEcCC
Q 022716          271 AGDDK  275 (293)
Q Consensus       271 ~~~d~  275 (293)
                      ...+.
T Consensus       343 ~~~~~  347 (693)
T 3iuj_A          343 EYMVD  347 (693)
T ss_dssp             EEEET
T ss_pred             EEEEC
Confidence            87653

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.02  E-value=8.1e-08  Score=84.81  Aligned_cols=237  Identities=11%  Similarity=0.036  Sum_probs=145.6

Q ss_pred             CCCCeEEEEeC-CCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEE-c-CCCCCEEEEEe------------------CC
Q 022716           30 CTGTKLASGSV-DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW-D-PKHADLIATAS------------------GD   88 (293)
Q Consensus        30 ~~~~~l~s~~~-dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~-~-~~~~~~l~s~~------------------~d   88 (293)
                      +||++|..... ++.|.+-|++...  ....+.++. ......+++ . |++ .+++.++                  .+
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~--~~~ii~ip~-g~~phg~~~~~~p~~-~~v~~~~~~~~p~~~dg~~l~~~~~~~  174 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMK--CDAILEIPN-AKGIHGLRPQKWPRS-NYVFCNGEDETPLVNDGTNMEDVANYV  174 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTE--EEEEEECSS-CCSEEEEEECCSSBC-SEEEEEECSCEESSCSSSSTTCGGGEE
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCce--EeeEEeCCC-CCCCcceeeeecCCC-cEEEEecccccccCCCCcccccccccC
Confidence            48888765554 5678899987542  222223332 123556666 3 654 4555553                  24


Q ss_pred             CeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCC---------------eEEEEEccccceeee---ecccc
Q 022716           89 KTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDD---------------ELTILDVRKFKPIHR---RKFGY  150 (293)
Q Consensus        89 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~---------------~i~l~d~~~~~~~~~---~~~~~  150 (293)
                      +.+.+.|..+.+...++...+.+-.++++|+|+++++.+.+.               .+.+.|.......-.   ...-.
T Consensus       175 ~~vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~  254 (595)
T 1fwx_A          175 NVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELN  254 (595)
T ss_dssp             EEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEET
T ss_pred             ceEEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEEC
Confidence            679999999988888777767777899999999999988653               355555432211000   00000


Q ss_pred             eeeeeEEecCC---CE-EEEecCCCCEEEEEECCCCCEEEEe-cCCCcEEEEeCCCCE------------EEEEeeccCC
Q 022716          151 EVNEIAWNMTG---EM-FFLTTGNAGCYCIAIDPMGRYFAVG-SADSLVSLWDISEML------------CVRTFTKLEW  213 (293)
Q Consensus       151 ~~~~v~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~l~~g-s~d~~i~iwd~~~~~------------~~~~~~~~~~  213 (293)
                      .+.-  .+...   .. ..........-++.++|||++++++ -.+++|.++|+.+..            ...+. ....
T Consensus       255 ~V~V--ID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v-~vG~  331 (595)
T 1fwx_A          255 GVKV--VDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP-ELGL  331 (595)
T ss_dssp             TEEE--EECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECC-BCCS
T ss_pred             cEEE--EeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEc-CCCC
Confidence            1111  11111   11 1111111233468899999976555 468899999998642            22222 2335


Q ss_pred             CeeEEEEccCCCEEEEecCCCcEEEEEcCC----------CCEEEEEecCCCc------ceeEECCCCCeEEEEEc
Q 022716          214 PVRTISFSHTGDYIASASEDLFIDISNVHT----------GRTVHQIPCRAAM------NSVEWNPKYNLLAYAGD  273 (293)
Q Consensus       214 ~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~----------~~~~~~~~~~~~i------~~~~~sp~~~~la~~~~  273 (293)
                      ....++|+|+|...++.-.|+.|.+||+.+          .+.+.+++-+-..      ..+..+|||++|.++..
T Consensus       332 gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk  407 (595)
T 1fwx_A          332 GPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK  407 (595)
T ss_dssp             CEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred             CcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCC
Confidence            688999999994445667899999999977          4556666543222      34567899999988875

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.01  E-value=6.5e-07  Score=76.51  Aligned_cols=191  Identities=13%  Similarity=0.099  Sum_probs=124.1

Q ss_pred             CCCCCEEEEEeCCCeEEEEeCCCC----eeeeeee---e----c-CceEEEEEcCCCCEEEEEeCC------CeEEEEEc
Q 022716           76 PKHADLIATASGDKTVRLWDARSG----KCSQQAE---L----S-GENINITYKPDGTHIAVGNRD------DELTILDV  137 (293)
Q Consensus        76 ~~~~~~l~s~~~d~~i~vwd~~~~----~~~~~~~---~----~-~~~~~~~~~~~~~~l~~~~~d------~~i~l~d~  137 (293)
                      ++...+++++..++.|.++|+.+.    +....++   .    . ..+..+...|+| .+++...+      +.+.++|.
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~  171 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH  171 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence            555557777888999999998754    3333332   1    1 134567888999 66666555      78999999


Q ss_pred             cccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEec-------------------CCCcEEEEe
Q 022716          138 RKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGS-------------------ADSLVSLWD  198 (293)
Q Consensus       138 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs-------------------~d~~i~iwd  198 (293)
                      ++++.+.+...+...                 ..--+.+.++|+++.+++..                   ...+|.+||
T Consensus       172 ~T~~v~~~~~~~~~~-----------------~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D  234 (462)
T 2ece_A          172 YSFEPLGKWEIDRGD-----------------QYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWD  234 (462)
T ss_dssp             TTCCEEEECCSBCTT-----------------CCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEE
T ss_pred             CCCeEEEEEccCCCC-----------------ccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEE
Confidence            988877665432110                 01112355678888777774                   368999999


Q ss_pred             CCCCEEEEEeecc-C-CCeeEEEE--ccCCCEEEEec------CCCcEEEEEcCCCCE--EEEE--ec------------
Q 022716          199 ISEMLCVRTFTKL-E-WPVRTISF--SHTGDYIASAS------EDLFIDISNVHTGRT--VHQI--PC------------  252 (293)
Q Consensus       199 ~~~~~~~~~~~~~-~-~~v~~l~~--sp~~~~l~s~s------~d~~i~iw~~~~~~~--~~~~--~~------------  252 (293)
                      +.+++.+.++.-- . .....+.|  +|+++++..+.      .++.|.+|....++.  +..+  ..            
T Consensus       235 ~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~  314 (462)
T 2ece_A          235 LRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILK  314 (462)
T ss_dssp             TTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGG
T ss_pred             CCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCcccccccccccc
Confidence            9998777766532 1 23556666  99999886665      566787766655431  1111  11            


Q ss_pred             -----CCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeee
Q 022716          253 -----RAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE  291 (293)
Q Consensus       253 -----~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~  291 (293)
                           ......|.+|||+++|-++...       .+.+++|+++
T Consensus       315 ~f~~~~~~pa~I~lS~DGrfLYVSnrg-------~d~VavfdV~  351 (462)
T 2ece_A          315 PFKAVPPLVTDIDISLDDKFLYLSLWG-------IGEVRQYDIS  351 (462)
T ss_dssp             GGTEECCCCCCEEECTTSCEEEEEETT-------TTEEEEEECS
T ss_pred             ccccCCCceeEEEECCCCCEEEEEeCC-------CCEEEEEEec
Confidence                 1346789999999988877653       3566777653

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.00  E-value=4.6e-07  Score=82.89  Aligned_cols=198  Identities=13%  Similarity=0.123  Sum_probs=126.3

Q ss_pred             EEEEcCCCCCEEEEEeCCC-------------------eEEEEeCCCCeeeeeeeecC----------ceEEEEEcCCC-
Q 022716           71 QLCWDPKHADLIATASGDK-------------------TVRLWDARSGKCSQQAELSG----------ENINITYKPDG-  120 (293)
Q Consensus        71 ~~~~~~~~~~~l~s~~~d~-------------------~i~vwd~~~~~~~~~~~~~~----------~~~~~~~~~~~-  120 (293)
                      .+++.|+. .+++.+..++                   .|..+|.++++.+-.++...          .+.-+....+| 
T Consensus       247 ~~~~d~~~-~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~  325 (677)
T 1kb0_A          247 SMTFDAEL-NTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGK  325 (677)
T ss_dssp             CEEEETTT-TEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTE
T ss_pred             ceeEcCCC-CEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCc
Confidence            45667764 5666666554                   48999999998776655421          22333444577 


Q ss_pred             --CEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEE-----------Eec----CCCCEEEEEECCCCC
Q 022716          121 --THIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFF-----------LTT----GNAGCYCIAIDPMGR  183 (293)
Q Consensus       121 --~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----------~~~----~~~~~~~~~~~~~~~  183 (293)
                        +.++.++.+|.+.++|.++.+.+....+...-..-.++..+....           ..+    +...-..++++|+..
T Consensus       326 ~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~  405 (677)
T 1kb0_A          326 PRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTG  405 (677)
T ss_dssp             EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTT
T ss_pred             EeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCC
Confidence              678889999999999999988766544321100001111111111           000    000011356667666


Q ss_pred             EEEEecC-------------------------------------------CCcEEEEeCCCCEEEEEeeccCCCeeEEEE
Q 022716          184 YFAVGSA-------------------------------------------DSLVSLWDISEMLCVRTFTKLEWPVRTISF  220 (293)
Q Consensus       184 ~l~~gs~-------------------------------------------d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~  220 (293)
                      ++.+...                                           .+.|..||+.+++.+-++. +..++....+
T Consensus       406 ~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~-~~~~~~~g~~  484 (677)
T 1kb0_A          406 LVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE-HVSPWNGGTL  484 (677)
T ss_dssp             EEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE-ESSSCCCCEE
T ss_pred             EEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecC-CCCCCcCcce
Confidence            6655432                                           2789999999998776654 3445555667


Q ss_pred             ccCCCEEEEecCCCcEEEEEcCCCCEEEEEecCCCc--ceeEECCCCCeEEE
Q 022716          221 SHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAM--NSVEWNPKYNLLAY  270 (293)
Q Consensus       221 sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~i--~~~~~sp~~~~la~  270 (293)
                      ++++..++.++.|+.+++||..+|+.+..+.....+  ..+.|.++|++++.
T Consensus       485 ~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~  536 (677)
T 1kb0_A          485 TTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVS  536 (677)
T ss_dssp             EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             EeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEE
Confidence            788889999999999999999999999888755443  34778888865443

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.93  E-value=3.6e-07  Score=83.63  Aligned_cols=244  Identities=11%  Similarity=0.052  Sum_probs=149.9

Q ss_pred             CCCeEEEEeCCCcEEEeecCCCCCCceeEEEee-CCc--CCeeE-EEEcCCCCCEEEEEeC------CCeEEEEeCCCCe
Q 022716           31 TGTKLASGSVDQTARVWHIEPHGHGKVKDIELR-GHA--DSVDQ-LCWDPKHADLIATASG------DKTVRLWDARSGK  100 (293)
Q Consensus        31 ~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~-~h~--~~i~~-~~~~~~~~~~l~s~~~------d~~i~vwd~~~~~  100 (293)
                      ++..++.++.|+.+..+|..+..  ........ ...  ..+.. ...  .+ ..++.++.      ++.|+.+|..+++
T Consensus       127 ~~~~v~v~~~dg~l~alD~~tG~--~~W~~~~~~~~~~~~~~~~~p~v--~~-~~v~v~~~~~~~~~~g~v~a~D~~tG~  201 (677)
T 1kb0_A          127 WKGKVYVGAWDGRLIALDAATGK--EVWHQNTFEGQKGSLTITGAPRV--FK-GKVIIGNGGAEYGVRGYITAYDAETGE  201 (677)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCC--EEEEEETTTTCCSSCBCCSCCEE--ET-TEEEECCBCTTTCCBCEEEEEETTTCC
T ss_pred             ECCEEEEEcCCCEEEEEECCCCC--EEeeecCCcCcCcCcccccCcEE--EC-CEEEEEecccccCCCCEEEEEECCCCc
Confidence            35678888899999999986532  22222221 000  11111 111  12 34444443      7899999999998


Q ss_pred             eeeeeeecCce---------------------------------EEEEEcCCCCEEEEEeCCC-----------------
Q 022716          101 CSQQAELSGEN---------------------------------INITYKPDGTHIAVGNRDD-----------------  130 (293)
Q Consensus       101 ~~~~~~~~~~~---------------------------------~~~~~~~~~~~l~~~~~d~-----------------  130 (293)
                      .+-.+......                                 ..++++|++..++.++.++                 
T Consensus       202 ~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~  281 (677)
T 1kb0_A          202 RKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLY  281 (677)
T ss_dssp             EEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTT
T ss_pred             EEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCee
Confidence            77655432111                                 2467888888888887664                 


Q ss_pred             --eEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCC---CEEEEecCCCcEEEEeCCCCEEE
Q 022716          131 --ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMG---RYFAVGSADSLVSLWDISEMLCV  205 (293)
Q Consensus       131 --~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~gs~d~~i~iwd~~~~~~~  205 (293)
                        .|..+|.++.+..-.......   -.|+..       . ......+....+|   ..++.++.+|.++++|.++++.+
T Consensus       282 ~~sv~AlD~~TG~~~W~~~~~~~---d~wd~~-------~-~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l  350 (677)
T 1kb0_A          282 LASIVALDPDTGKYKWHYQETPG---DNWDYT-------S-TQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFI  350 (677)
T ss_dssp             TTEEEEECTTTCCEEEEEESSTT---CCSCCC-------C-CSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred             eEEEEEEECCCCCEEEEEecCCC---cccccc-------c-CCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEe
Confidence              477777776654332221100   001100       0 0112223333466   67899999999999999999877


Q ss_pred             EEeeccCC-----------Ce------------------------eEEEEccCCCEEEEecC------------------
Q 022716          206 RTFTKLEW-----------PV------------------------RTISFSHTGDYIASASE------------------  232 (293)
Q Consensus       206 ~~~~~~~~-----------~v------------------------~~l~~sp~~~~l~s~s~------------------  232 (293)
                      -.+.....           ++                        ..++|+|++.+++....                  
T Consensus       351 ~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~  430 (677)
T 1kb0_A          351 SAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAG  430 (677)
T ss_dssp             EEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCC
T ss_pred             ccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccc
Confidence            65432110           01                        25788999888877543                  


Q ss_pred             -------------------------CCcEEEEEcCCCCEEEEEecCCCcceeEECCCCCeEEEEEcCCCCCCCCcceE-E
Q 022716          233 -------------------------DLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVF-R  286 (293)
Q Consensus       233 -------------------------d~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~-~  286 (293)
                                               .+.|..||..+++.+-.++...+.....+.+.+..+.+++.|+.++.+|..+. .
T Consensus       431 ~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~  510 (677)
T 1kb0_A          431 PGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEK  510 (677)
T ss_dssp             TTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             ccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCce
Confidence                                     27799999999998888877777777778888888888888877766664333 3


Q ss_pred             EEee
Q 022716          287 IYGF  290 (293)
Q Consensus       287 ~~~~  290 (293)
                      +|.+
T Consensus       511 lw~~  514 (677)
T 1kb0_A          511 LWEA  514 (677)
T ss_dssp             EEEE
T ss_pred             eeee
Confidence            3444

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.93  E-value=2.5e-07  Score=84.84  Aligned_cols=245  Identities=10%  Similarity=0.117  Sum_probs=148.9

Q ss_pred             CCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcC--CCCCEEEEEe------CCCeEEEEeCCCCeeee
Q 022716           32 GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDP--KHADLIATAS------GDKTVRLWDARSGKCSQ  103 (293)
Q Consensus        32 ~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~--~~~~~l~s~~------~d~~i~vwd~~~~~~~~  103 (293)
                      +..++.++.|+.|..+|..+..  .........+......+...|  .+. .++.++      .++.|..||.++++.+-
T Consensus       121 ~g~v~v~~~dg~l~AlDa~TG~--~~W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W  197 (689)
T 1yiq_A          121 KGKVYVGVLDGRLEAIDAKTGQ--RAWSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAW  197 (689)
T ss_dssp             TTEEEEECTTSEEEEEETTTCC--EEEEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred             CCEEEEEccCCEEEEEECCCCC--EeeeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEE
Confidence            5578888899999999986532  223322210111101111111  122 344443      37899999999998765


Q ss_pred             eeeec-C------------------------------c-eEEEEEcCCCCEEEEEeCCCe-------------------E
Q 022716          104 QAELS-G------------------------------E-NINITYKPDGTHIAVGNRDDE-------------------L  132 (293)
Q Consensus       104 ~~~~~-~------------------------------~-~~~~~~~~~~~~l~~~~~d~~-------------------i  132 (293)
                      .+... .                              . -..+++.|++..++.++.++.                   +
T Consensus       198 ~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v  277 (689)
T 1yiq_A          198 RFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSI  277 (689)
T ss_dssp             EEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEE
T ss_pred             EecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeE
Confidence            54421 0                              0 014678888888988887764                   8


Q ss_pred             EEEEccccceeeeeccc-ceeeeeEEecCCCEEEEecCCCCEEEEEECCCCC---EEEEecCCCcEEEEeCCCCEEEEEe
Q 022716          133 TILDVRKFKPIHRRKFG-YEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGR---YFAVGSADSLVSLWDISEMLCVRTF  208 (293)
Q Consensus       133 ~l~d~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~gs~d~~i~iwd~~~~~~~~~~  208 (293)
                      ..+|.++.+..-..... ...    |+..        .........+..+|+   .++.++.+|.++++|.++++.+...
T Consensus       278 ~AlD~~TG~~~W~~~~~~~d~----wd~~--------~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~  345 (689)
T 1yiq_A          278 VAVNADTGEYVWHYQTTPGDA----WDYT--------ATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAK  345 (689)
T ss_dssp             EEEETTTCCEEEEEESSTTCC----SCCC--------CCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEE
T ss_pred             EEEEccCCceeEeeecCCccc----cccc--------CCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccc
Confidence            88888876654332211 110    1100        001111222223454   7889999999999999999876332


Q ss_pred             eccC--C-------------------------------------CeeEEEEccCCCEEEEecC-----------------
Q 022716          209 TKLE--W-------------------------------------PVRTISFSHTGDYIASASE-----------------  232 (293)
Q Consensus       209 ~~~~--~-------------------------------------~v~~l~~sp~~~~l~s~s~-----------------  232 (293)
                      ....  +                                     ....++|+|+..+++..+.                 
T Consensus       346 ~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~  425 (689)
T 1yiq_A          346 GIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNP  425 (689)
T ss_dssp             ESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCS
T ss_pred             cccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccc
Confidence            1110  0                                     0123788898887776522                 


Q ss_pred             ----------------------------CCcEEEEEcCCCCEEEEEecCCCcceeEECCCCCeEEEEEcCCCCCCCCcce
Q 022716          233 ----------------------------DLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGV  284 (293)
Q Consensus       233 ----------------------------d~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~  284 (293)
                                                  ++.|..||..+|+.+-+++...+...-.+.+.+.++++++.|+.++.+|..+
T Consensus       426 ~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~t  505 (689)
T 1yiq_A          426 FKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYAADT  505 (689)
T ss_dssp             CTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTT
T ss_pred             cccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEECCCCcEEEEECCC
Confidence                                        3779999999999988887777777667888888999998887777766544


Q ss_pred             E-EEEeee
Q 022716          285 F-RIYGFE  291 (293)
Q Consensus       285 ~-~~~~~~  291 (293)
                      - .+|.++
T Consensus       506 G~~lw~~~  513 (689)
T 1yiq_A          506 GEKLWEQP  513 (689)
T ss_dssp             CCEEEEEE
T ss_pred             Cccceeee
Confidence            4 345553

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.92  E-value=6.9e-07  Score=70.92  Aligned_cols=190  Identities=13%  Similarity=0.110  Sum_probs=121.4

Q ss_pred             eeecCccc--cEEEEEECCCCCeEEEEeCCC--cEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCC
Q 022716           14 REYTGHKK--KVHSVAWNCTGTKLASGSVDQ--TARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDK   89 (293)
Q Consensus        14 ~~~~~h~~--~v~~l~~s~~~~~l~s~~~dg--~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~   89 (293)
                      ++| .|..  -...|.|+ ++....+.+.+|  .|+.+|+++..  ......+... ..--.++.  .+..+++..-.++
T Consensus        35 ~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgk--v~~~~~l~~~-~FgeGit~--~g~~ly~ltw~~~  107 (262)
T 3nol_A           35 HSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGK--TLQQIELGKR-YFGEGISD--WKDKIVGLTWKNG  107 (262)
T ss_dssp             EEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCC--EEEEEECCTT-CCEEEEEE--ETTEEEEEESSSS
T ss_pred             EEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCc--EEEEEecCCc-cceeEEEE--eCCEEEEEEeeCC
Confidence            444 5553  35899998 676667888776  89999987542  2223333221 11122333  3345555555689


Q ss_pred             eEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeeccc---ceeeeeEEecCCCEEEE
Q 022716           90 TVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFG---YEVNEIAWNMTGEMFFL  166 (293)
Q Consensus        90 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~  166 (293)
                      .+.++|..+.+.+..+........+  .+|++.|+....++++.++|..+.+.......+   .++.             
T Consensus       108 ~v~v~D~~t~~~~~ti~~~~eG~gl--t~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~-------------  172 (262)
T 3nol_A          108 LGFVWNIRNLRQVRSFNYDGEGWGL--THNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELP-------------  172 (262)
T ss_dssp             EEEEEETTTCCEEEEEECSSCCCCE--EECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECC-------------
T ss_pred             EEEEEECccCcEEEEEECCCCceEE--ecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCcccc-------------
Confidence            9999999999988887766544444  467787777777889999999988776654432   1110             


Q ss_pred             ecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeecc------------CCCeeEEEEccCCCEEEEec
Q 022716          167 TTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL------------EWPVRTISFSHTGDYIASAS  231 (293)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~------------~~~v~~l~~sp~~~~l~s~s  231 (293)
                           .+..+.+. +|+.++..-.++.|.+.|.++++.+..+.-.            ..-.+.|+|+|+++.|...+
T Consensus       173 -----~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG  243 (262)
T 3nol_A          173 -----ELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG  243 (262)
T ss_dssp             -----CEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred             -----ccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence                 01122332 5666665556788999999999887765421            12468899999876654433

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.90  E-value=8.2e-07  Score=81.44  Aligned_cols=201  Identities=11%  Similarity=0.153  Sum_probs=124.7

Q ss_pred             EEEEcCCCCCEEEEEeCCCe-------------------EEEEeCCCCeeeeeeeecC----------ceEEEEEcCCCC
Q 022716           71 QLCWDPKHADLIATASGDKT-------------------VRLWDARSGKCSQQAELSG----------ENINITYKPDGT  121 (293)
Q Consensus        71 ~~~~~~~~~~~l~s~~~d~~-------------------i~vwd~~~~~~~~~~~~~~----------~~~~~~~~~~~~  121 (293)
                      .+++.|+. .+++.+..++.                   |..+|.++++.+-.++...          ..+-.....+|+
T Consensus       239 ~~~~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~  317 (689)
T 1yiq_A          239 SFAYDPEL-NLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGK  317 (689)
T ss_dssp             CEEEETTT-TEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTE
T ss_pred             ceeEcCCC-CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCc
Confidence            45677754 57777877763                   9999999998876655321          122222333565


Q ss_pred             ---EEEEEeCCCeEEEEEccccceeeeecccceeeeeEEe----------------cCCCEEEEecC---CCCEEEEEEC
Q 022716          122 ---HIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWN----------------MTGEMFFLTTG---NAGCYCIAID  179 (293)
Q Consensus       122 ---~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~----------------~~~~~~~~~~~---~~~~~~~~~~  179 (293)
                         .++.++.+|.+.++|.++.+.+....+.........+                +.+....+...   ...-..++++
T Consensus       318 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~d  397 (689)
T 1yiq_A          318 PRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYN  397 (689)
T ss_dssp             EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEE
T ss_pred             EEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceEC
Confidence               7888899999999999998876544332100000000                01111111000   0001124555


Q ss_pred             CCCCEEEEec---------------------------------------------CCCcEEEEeCCCCEEEEEeeccCCC
Q 022716          180 PMGRYFAVGS---------------------------------------------ADSLVSLWDISEMLCVRTFTKLEWP  214 (293)
Q Consensus       180 ~~~~~l~~gs---------------------------------------------~d~~i~iwd~~~~~~~~~~~~~~~~  214 (293)
                      |+..++.+.+                                             .+|.|..||+.+++.+-++..+ .+
T Consensus       398 p~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~-~~  476 (689)
T 1yiq_A          398 PDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYV-TI  476 (689)
T ss_dssp             TTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEES-SS
T ss_pred             CCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCC-CC
Confidence            5555544431                                             1478999999999877666443 34


Q ss_pred             eeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEecCCCc--ceeEECCCCCe-EEEEEc
Q 022716          215 VRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAM--NSVEWNPKYNL-LAYAGD  273 (293)
Q Consensus       215 v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~i--~~~~~sp~~~~-la~~~~  273 (293)
                      +..-.++..+.+++.|+.|+.++.||.++|+.+.++.....+  ..+.|..+|.+ +++.+.
T Consensus       477 ~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~~~~G  538 (689)
T 1yiq_A          477 FNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVTFMAG  538 (689)
T ss_dssp             CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred             ccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEEEEec
Confidence            444466778889999999999999999999999887665444  35888888864 554443

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.88  E-value=1.7e-06  Score=68.76  Aligned_cols=193  Identities=15%  Similarity=0.073  Sum_probs=124.8

Q ss_pred             eeecCcc--ccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716           14 REYTGHK--KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (293)
Q Consensus        14 ~~~~~h~--~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i   91 (293)
                      ++| .|.  .-...|.|+ ++...++.+.+|.|+++|+++...  ...+ +... ..--.++.  .+..+++..-.++.+
T Consensus        47 ~~~-phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv--~~~~-l~~~-~FgeGit~--~g~~Ly~ltw~~~~v  118 (268)
T 3nok_A           47 REY-PHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQP--VWME-RLGN-IFAEGLAS--DGERLYQLTWTEGLL  118 (268)
T ss_dssp             EEE-ECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSC--SEEE-ECTT-CCEEEEEE--CSSCEEEEESSSCEE
T ss_pred             EEE-cCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcE--EeEE-CCCC-cceeEEEE--eCCEEEEEEccCCEE
Confidence            444 454  345889987 456667888899999999986532  2223 4321 11122444  345676666679999


Q ss_pred             EEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCC
Q 022716           92 RLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNA  171 (293)
Q Consensus        92 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  171 (293)
                      .++|..+.+.+..+........++  +|++.|+.+..++++.++|.++.+..........-..+               .
T Consensus       119 ~V~D~~Tl~~~~ti~~~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v---------------~  181 (268)
T 3nok_A          119 FTWSGMPPQRERTTRYSGEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPV---------------E  181 (268)
T ss_dssp             EEEETTTTEEEEEEECSSCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEEC---------------C
T ss_pred             EEEECCcCcEEEEEeCCCceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCccc---------------c
Confidence            999999999888877665544444  67888888878999999999988776655432110000               0


Q ss_pred             CEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeecc-------------CCCeeEEEEccCCC-EEEEecC
Q 022716          172 GCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL-------------EWPVRTISFSHTGD-YIASASE  232 (293)
Q Consensus       172 ~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~-------------~~~v~~l~~sp~~~-~l~s~s~  232 (293)
                      .+.-+.+. +|+.++..-.++.|.+.|.++++.+..+.-.             ..-.+.|+|+|+++ +++||-.
T Consensus       182 ~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~  255 (268)
T 3nok_A          182 LINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKL  255 (268)
T ss_dssp             CEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETT
T ss_pred             cccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCC
Confidence            11122332 5666665656788999999999887765321             13568899999765 5566543

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.81  E-value=5.7e-06  Score=65.07  Aligned_cols=195  Identities=13%  Similarity=0.079  Sum_probs=122.5

Q ss_pred             ceeecCcc--ccEEEEEECCCCCeEEEEeCCC--cEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCC
Q 022716           13 SREYTGHK--KKVHSVAWNCTGTKLASGSVDQ--TARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD   88 (293)
Q Consensus        13 ~~~~~~h~--~~v~~l~~s~~~~~l~s~~~dg--~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d   88 (293)
                      .++| .|.  +-...|.|++ +....+.+.+|  .|+.+|+++..  ......+..+. .--.++.  .+..++...-.+
T Consensus        12 ~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgk--v~~~~~l~~~~-fgeGi~~--~~~~ly~ltw~~   84 (243)
T 3mbr_X           12 VKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGR--ILQRAEVPPPY-FGAGIVA--WRDRLIQLTWRN   84 (243)
T ss_dssp             EEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCC--EEEEEECCTTC-CEEEEEE--ETTEEEEEESSS
T ss_pred             EEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCC--EEEEEeCCCCc-ceeEEEE--eCCEEEEEEeeC
Confidence            3445 565  4578999986 55666777654  89999997542  22333333321 1122333  234566666668


Q ss_pred             CeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEec
Q 022716           89 KTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTT  168 (293)
Q Consensus        89 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  168 (293)
                      +.+.++|.++.+.+..+........++  ++++.|+.+..++++.++|..+.+.......+..-..+             
T Consensus        85 ~~v~v~D~~tl~~~~ti~~~~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~-------------  149 (243)
T 3mbr_X           85 HEGFVYDLATLTPRARFRYPGEGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPL-------------  149 (243)
T ss_dssp             SEEEEEETTTTEEEEEEECSSCCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEEC-------------
T ss_pred             CEEEEEECCcCcEEEEEeCCCCceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCccc-------------
Confidence            999999999999888887766554554  66777777777899999999988776665432100000             


Q ss_pred             CCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeecc-------------CCCeeEEEEccCCCEE-EEecC
Q 022716          169 GNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL-------------EWPVRTISFSHTGDYI-ASASE  232 (293)
Q Consensus       169 ~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~-------------~~~v~~l~~sp~~~~l-~s~s~  232 (293)
                        ..+.-+.+. +|+.++..-.++.|.+.|.++++.+..+.-.             ..-.+.|+++|+++.| +||-.
T Consensus       150 --~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~  224 (243)
T 3mbr_X          150 --DNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKR  224 (243)
T ss_dssp             --CCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETT
T ss_pred             --ccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCC
Confidence              001112222 5555655556778999999999887765411             1246889999986654 55543

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.78  E-value=7.4e-06  Score=69.25  Aligned_cols=232  Identities=11%  Similarity=0.105  Sum_probs=131.4

Q ss_pred             CCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeeeecCc
Q 022716           31 TGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGE  110 (293)
Q Consensus        31 ~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~  110 (293)
                      ++..++.++.|+.|..+|..+..  ......+...  ........   ...++.++.++.+..+|..+++.+........
T Consensus       102 ~~~~v~v~~~~g~l~a~d~~tG~--~~W~~~~~~~--~~~~p~~~---~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~  174 (376)
T 3q7m_A          102 SGGHVYIGSEKAQVYALNTSDGT--VAWQTKVAGE--ALSRPVVS---DGLVLIHTSNGQLQALNEADGAVKWTVNLDMP  174 (376)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCC--EEEEEECSSC--CCSCCEEE---TTEEEEECTTSEEEEEETTTCCEEEEEECCC-
T ss_pred             eCCEEEEEcCCCEEEEEECCCCC--EEEEEeCCCc--eEcCCEEE---CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCC
Confidence            45577788889999999986432  2222222221  11111111   24677788899999999999987766554333


Q ss_pred             eE------EEEEcCCCCEEEEEeCCCeEEEEEccccceeeeeccccee-----e---eeEEec--CCCEEEEecCCCCE-
Q 022716          111 NI------NITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEV-----N---EIAWNM--TGEMFFLTTGNAGC-  173 (293)
Q Consensus       111 ~~------~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~-----~---~v~~~~--~~~~~~~~~~~~~~-  173 (293)
                      ..      .....  +..+++++.++.+..+|.++.+...........     .   .+.-.|  .+..+++......+ 
T Consensus       175 ~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~  252 (376)
T 3q7m_A          175 SLSLRGESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLT  252 (376)
T ss_dssp             ----CCCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEE
T ss_pred             ceeecCCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEE
Confidence            21      11222  356788888999999999877655443321100     0   000000  01122222212111 


Q ss_pred             ------------------EEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccC-CCeeEEEEccCCCEEEEecCCC
Q 022716          174 ------------------YCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLE-WPVRTISFSHTGDYIASASEDL  234 (293)
Q Consensus       174 ------------------~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~-~~v~~l~~sp~~~~l~s~s~d~  234 (293)
                                        ..+..  ++..+.+++.++.|..+|.++++.+-...... ..+.+...  .+..|+.++.++
T Consensus       253 ~~d~~tG~~~w~~~~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g  328 (376)
T 3q7m_A          253 ALDLRSGQIMWKRELGSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEG  328 (376)
T ss_dssp             EEETTTCCEEEEECCCCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTS
T ss_pred             EEECCCCcEEeeccCCCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCC
Confidence                              22222  35667778889999999999987765544222 12222222  356788889999


Q ss_pred             cEEEEEcCCCCEEEEEec-CCCcce-eEECCCCCeEEEEEcCCCC
Q 022716          235 FIDISNVHTGRTVHQIPC-RAAMNS-VEWNPKYNLLAYAGDDKNK  277 (293)
Q Consensus       235 ~i~iw~~~~~~~~~~~~~-~~~i~~-~~~sp~~~~la~~~~d~~~  277 (293)
                      .+..+|..+++.+..... ...+.+ ...  .+..|..++.++.+
T Consensus       329 ~l~~~d~~tG~~~~~~~~~~~~~~~~~~~--~~~~l~v~~~~G~l  371 (376)
T 3q7m_A          329 YLHWINVEDGRFVAQQKVDSSGFQTEPVA--ADGKLLIQAKDGTV  371 (376)
T ss_dssp             EEEEEETTTCCEEEEEECCTTCBCSCCEE--ETTEEEEEBTTSCE
T ss_pred             eEEEEECCCCcEEEEEecCCCcceeCCEE--ECCEEEEEeCCCEE
Confidence            999999999998876654 233322 222  24466666666443

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.78  E-value=1.1e-05  Score=64.80  Aligned_cols=191  Identities=12%  Similarity=0.034  Sum_probs=111.4

Q ss_pred             CeEEEEeCCCcEEEeecCCCCCCcee-EEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeeeec-Cc
Q 022716           33 TKLASGSVDQTARVWHIEPHGHGKVK-DIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELS-GE  110 (293)
Q Consensus        33 ~~l~s~~~dg~v~iw~~~~~~~~~~~-~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~-~~  110 (293)
                      ++|+.+.. +.|+.++++........ ...+.........+++.+.+..++++-..++.|.+++............. ..
T Consensus         2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~   80 (267)
T 1npe_A            2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS   80 (267)
T ss_dssp             EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred             cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCC
Confidence            45555553 47888887643211100 00111112346788898876667777777889999998765433222211 45


Q ss_pred             eEEEEEcCCCCEEEEE-eCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEE-EEe
Q 022716          111 NINITYKPDGTHIAVG-NRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYF-AVG  188 (293)
Q Consensus       111 ~~~~~~~~~~~~l~~~-~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~g  188 (293)
                      +..+++.|++..+..+ ...++|..+++.......                    ...........++++|++..| ++.
T Consensus        81 p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~--------------------~~~~~~~~P~~i~vd~~~g~lyv~~  140 (267)
T 1npe_A           81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV--------------------LFDTGLVNPRGIVTDPVRGNLYWTD  140 (267)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE--------------------EECSSCSSEEEEEEETTTTEEEEEE
T ss_pred             ccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEE--------------------EEECCCCCccEEEEeeCCCEEEEEE
Confidence            6789999976655554 456788888875422110                    011111345678888865444 443


Q ss_pred             cC--CCcEEEEeCCCCEEEEEee-ccCCCeeEEEEccCCCEE-EEecCCCcEEEEEcCCCC
Q 022716          189 SA--DSLVSLWDISEMLCVRTFT-KLEWPVRTISFSHTGDYI-ASASEDLFIDISNVHTGR  245 (293)
Q Consensus       189 s~--d~~i~iwd~~~~~~~~~~~-~~~~~v~~l~~sp~~~~l-~s~s~d~~i~iw~~~~~~  245 (293)
                      ..  .+.|..+++.... ...+. ........++++|++..| ++....+.|.+++.....
T Consensus       141 ~~~~~~~I~~~~~dg~~-~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~  200 (267)
T 1npe_A          141 WNRDNPKIETSHMDGTN-RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPG  200 (267)
T ss_dssp             CCSSSCEEEEEETTSCC-CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEE
T ss_pred             CCCCCcEEEEEecCCCC-cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCc
Confidence            33  4678888875432 22222 222467899999987665 555567889999986543

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.77  E-value=8.2e-08  Score=84.77  Aligned_cols=203  Identities=12%  Similarity=0.057  Sum_probs=136.9

Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCCeeeeeeee--cCceEEEEE-c-CCCCEEEEEeC------------------CCeEEE
Q 022716           77 KHADLIATASGDKTVRLWDARSGKCSQQAEL--SGENINITY-K-PDGTHIAVGNR------------------DDELTI  134 (293)
Q Consensus        77 ~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~--~~~~~~~~~-~-~~~~~l~~~~~------------------d~~i~l  134 (293)
                      ++..++++...+..|.+.|+++.++...++.  ...+..+++ + |++++++++++                  ++.+.+
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv  179 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA  179 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred             CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence            3444566666688899999999998875554  344667777 5 99999999852                  457899


Q ss_pred             EEccccceeeeecccceeeeeEEecCCCEEEEecCCCCE-------------EEE--------EECCCCCEEEEecCCCc
Q 022716          135 LDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGC-------------YCI--------AIDPMGRYFAVGSADSL  193 (293)
Q Consensus       135 ~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-------------~~~--------~~~~~~~~l~~gs~d~~  193 (293)
                      +|..+.+...+...+.....+..++++...+.++.++..             ...        .+.++|++.-.    +.
T Consensus       180 ID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i----~~  255 (595)
T 1fwx_A          180 VDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQEL----NG  255 (595)
T ss_dssp             EETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEE----TT
T ss_pred             EECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEE----Cc
Confidence            999988877777665566778888888888887754310             111        12245544333    45


Q ss_pred             EEEEeCCC--CEE-EEEeeccCCCeeEEEEccCCCEEEEe-cCCCcEEEEEcCCCC------------EEEEEecCCCcc
Q 022716          194 VSLWDISE--MLC-VRTFTKLEWPVRTISFSHTGDYIASA-SEDLFIDISNVHTGR------------TVHQIPCRAAMN  257 (293)
Q Consensus       194 i~iwd~~~--~~~-~~~~~~~~~~v~~l~~sp~~~~l~s~-s~d~~i~iw~~~~~~------------~~~~~~~~~~i~  257 (293)
                      |.+.|.++  +.. +..+.. ......+.++|||++++.+ ..+..|.++|+.+.+            ..........-.
T Consensus       256 V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~  334 (595)
T 1fwx_A          256 VKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPL  334 (595)
T ss_dssp             EEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEE
T ss_pred             EEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcc
Confidence            99999987  433 334432 3456889999999987555 478999999998652            334444455677


Q ss_pred             eeEECCCCCeEEEEEcCCCCCCCCcceEEEEeeec
Q 022716          258 SVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN  292 (293)
Q Consensus       258 ~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~~  292 (293)
                      -++|+|+|..+.+.-.|        +.+-+|++++
T Consensus       335 h~aF~~dG~aY~t~~ld--------sqV~kwdi~~  361 (595)
T 1fwx_A          335 HTAFDGRGNAYTSLFLD--------SQVVKWNIED  361 (595)
T ss_dssp             EEEECTTSEEEEEETTT--------TEEEEEEHHH
T ss_pred             eEEECCCCeEEEEEecC--------CcEEEEEhhH
Confidence            89999999322333233        4555577664

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.75  E-value=5.6e-06  Score=75.57  Aligned_cols=247  Identities=11%  Similarity=0.040  Sum_probs=135.3

Q ss_pred             EEEECC-CCCeEEEEeCCC-----------cEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeC-CCeE
Q 022716           25 SVAWNC-TGTKLASGSVDQ-----------TARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASG-DKTV   91 (293)
Q Consensus        25 ~l~~s~-~~~~l~s~~~dg-----------~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~-d~~i   91 (293)
                      ..++.+ +|+.++.|+.++           .+.+||...+......... ..+......+++.++ +.+++.|+. +..+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~-~~~~~~~~~~~~~~~-g~lyv~GG~~~~~v  267 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTV-TKHDMFCPGISMDGN-GQIVVTGGNDAKKT  267 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEE-CSCCCSSCEEEECTT-SCEEEECSSSTTCE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccC-CCCCCccccccCCCC-CCEEEeCCCCCCce
Confidence            455566 888888888653           5788988765433332211 123333444555554 467888874 5689


Q ss_pred             EEEeCCCCeeeeeeeecCc--eEEEEEcCCCCEEEEEe-CC-----CeEEEEEccccceeee-----eccc---------
Q 022716           92 RLWDARSGKCSQQAELSGE--NINITYKPDGTHIAVGN-RD-----DELTILDVRKFKPIHR-----RKFG---------  149 (293)
Q Consensus        92 ~vwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~-~d-----~~i~l~d~~~~~~~~~-----~~~~---------  149 (293)
                      .+||..+.+....-.....  ..+++..++|+.++.|+ .+     ..+.+||+.+..-...     ....         
T Consensus       268 ~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~  347 (656)
T 1k3i_A          268 SLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYR  347 (656)
T ss_dssp             EEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGT
T ss_pred             EEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceee
Confidence            9999887765433222211  12455667999999988 34     4688999876442221     0000         


Q ss_pred             --cee----------------ee-eEEecCCCEEEE--ecC---------CCCEEEEEEC-CCCCEEEEecCCC------
Q 022716          150 --YEV----------------NE-IAWNMTGEMFFL--TTG---------NAGCYCIAID-PMGRYFAVGSADS------  192 (293)
Q Consensus       150 --~~~----------------~~-v~~~~~~~~~~~--~~~---------~~~~~~~~~~-~~~~~l~~gs~d~------  192 (293)
                        ..+                .. ..|++.......  ...         ...-.++.+. .++++++.|+.++      
T Consensus       348 ~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~  427 (656)
T 1k3i_A          348 SDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDA  427 (656)
T ss_dssp             TTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBC
T ss_pred             cCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCc
Confidence              000                00 112221111000  000         0011233332 3678888888543      


Q ss_pred             -----cEEEEeCCCCEEEEEe--eccCCC-eeEEEEccCCCEEEEecCC-----------CcEEEEEcCCCCEEE--EEe
Q 022716          193 -----LVSLWDISEMLCVRTF--TKLEWP-VRTISFSHTGDYIASASED-----------LFIDISNVHTGRTVH--QIP  251 (293)
Q Consensus       193 -----~i~iwd~~~~~~~~~~--~~~~~~-v~~l~~sp~~~~l~s~s~d-----------~~i~iw~~~~~~~~~--~~~  251 (293)
                           .|.+||..+..-....  .-.... -.+....|+++.++.|+.+           ..+.+||..+.+-..  .++
T Consensus       428 ~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~  507 (656)
T 1k3i_A          428 TTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNS  507 (656)
T ss_dssp             CCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCS
T ss_pred             CCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCC
Confidence                 6888888765433322  111122 2344567899999999854           458899998754322  112


Q ss_pred             c-CCCcceeEECCCCCeEEEEEc
Q 022716          252 C-RAAMNSVEWNPKYNLLAYAGD  273 (293)
Q Consensus       252 ~-~~~i~~~~~sp~~~~la~~~~  273 (293)
                      . +.......+.|++.++++||.
T Consensus       508 ~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          508 IVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             SCCCTTEEEEECTTSCEEEEECC
T ss_pred             CccccccHhhcCCCcEEEecCCC
Confidence            1 112223556799999999995

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.70  E-value=3.8e-05  Score=64.82  Aligned_cols=236  Identities=8%  Similarity=0.020  Sum_probs=134.3

Q ss_pred             CCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCC-------cCCee-EEEEcCCCCCEEEEEeCCCeEEEEeCCCCeee
Q 022716           31 TGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGH-------ADSVD-QLCWDPKHADLIATASGDKTVRLWDARSGKCS  102 (293)
Q Consensus        31 ~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h-------~~~i~-~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~  102 (293)
                      ++..+..++.++.|..+|.++..  ......+...       ...+. ....  . ...++.++.++.+..+|..+++..
T Consensus        52 ~~~~v~~~~~~g~v~a~d~~tG~--~~W~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~v~v~~~~g~l~a~d~~tG~~~  126 (376)
T 3q7m_A           52 ADNVVYAADRAGLVKALNADDGK--EIWSVSLAEKDGWFSKEPALLSGGVTV--S-GGHVYIGSEKAQVYALNTSDGTVA  126 (376)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCC--EEEEEECCC---CCSCCCCCEEEEEEE--E-TTEEEEEETTSEEEEEETTTCCEE
T ss_pred             ECCEEEEEcCCCeEEEEEccCCc--eeeeecCccccccccccCcccccCceE--e-CCEEEEEcCCCEEEEEECCCCCEE
Confidence            35678888889999999986432  2223332211       12222 2222  2 346777889999999999999877


Q ss_pred             eeeeecCceEE-EEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceee------eeEEecCCCEEEEecCCCCEEE
Q 022716          103 QQAELSGENIN-ITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVN------EIAWNMTGEMFFLTTGNAGCYC  175 (293)
Q Consensus       103 ~~~~~~~~~~~-~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~------~v~~~~~~~~~~~~~~~~~~~~  175 (293)
                      ........... ....  +..+++++.++.+..+|.++.+.+..........      .....  +..+++......+.+
T Consensus       127 W~~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~  202 (376)
T 3q7m_A          127 WQTKVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSA  202 (376)
T ss_dssp             EEEECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEE
T ss_pred             EEEeCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEE
Confidence            66555443221 1222  4578888889999999998776554433221110      00000  111111111111111


Q ss_pred             E----------------------------EECC--CCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCC
Q 022716          176 I----------------------------AIDP--MGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGD  225 (293)
Q Consensus       176 ~----------------------------~~~~--~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~  225 (293)
                      +                            ...|  .+..+..++.++.+..+|.++++.+-...  ......+..  ++.
T Consensus       203 ~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~--~~~~~~~~~--~~~  278 (376)
T 3q7m_A          203 VLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRE--LGSVNDFIV--DGN  278 (376)
T ss_dssp             EETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEEC--CCCEEEEEE--ETT
T ss_pred             EECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeecc--CCCCCCceE--ECC
Confidence            1                            0111  24567777888999999999887665443  223333333  466


Q ss_pred             EEEEecCCCcEEEEEcCCCCEEEEEe-cC-CCcceeEECCCCCeEEEEEcCCCCCCCC
Q 022716          226 YIASASEDLFIDISNVHTGRTVHQIP-CR-AAMNSVEWNPKYNLLAYAGDDKNKYQAD  281 (293)
Q Consensus       226 ~l~s~s~d~~i~iw~~~~~~~~~~~~-~~-~~i~~~~~sp~~~~la~~~~d~~~~~~~  281 (293)
                      .+..++.++.+..+|..+++.+.... .. ..+.....  .+..|..++.++.++..+
T Consensus       279 ~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d  334 (376)
T 3q7m_A          279 RIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWIN  334 (376)
T ss_dssp             EEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEE
T ss_pred             EEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEE
Confidence            78888889999999999999876654 21 12222222  245666666666555544

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.66  E-value=4.7e-05  Score=62.91  Aligned_cols=205  Identities=11%  Similarity=0.041  Sum_probs=118.6

Q ss_pred             ccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeC------------------CcCCeeEEEEcCCCCCEE
Q 022716           21 KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG------------------HADSVDQLCWDPKHADLI   82 (293)
Q Consensus        21 ~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~------------------h~~~i~~~~~~~~~~~~l   82 (293)
                      ....+++|+++|+.+.++..++.|..|+....   .........                  .......+++.++++.++
T Consensus        19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~   95 (322)
T 2fp8_A           19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNS---GFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLY   95 (322)
T ss_dssp             SCCCCEECCTTCSSEEEECTTSEEEEECCTTT---CEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEE
T ss_pred             CCceEEEEcCCCCEEEEEcCCCeEEEECCCCC---ceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEE
Confidence            34668899999988888888999999986532   122111100                  012467788876334454


Q ss_pred             EEEeCCCeEEEEeCCCCeeeeeee-ec----CceEEEEEcC-CCCEEEEEeC-----------------CCeEEEEEccc
Q 022716           83 ATASGDKTVRLWDARSGKCSQQAE-LS----GENINITYKP-DGTHIAVGNR-----------------DDELTILDVRK  139 (293)
Q Consensus        83 ~s~~~d~~i~vwd~~~~~~~~~~~-~~----~~~~~~~~~~-~~~~l~~~~~-----------------d~~i~l~d~~~  139 (293)
                      + +.....+..+|..++....... ..    ..+..+++.+ +|+..++...                 ++.+..+|..+
T Consensus        96 v-~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~  174 (322)
T 2fp8_A           96 I-VDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPST  174 (322)
T ss_dssp             E-EETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTT
T ss_pred             E-EECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCC
Confidence            4 5444558888876553221111 11    2345688888 8876665432                 24555555543


Q ss_pred             cceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEE-EecCCCcEEEEeCCCC--EEEEEeeccCCCee
Q 022716          140 FKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFA-VGSADSLVSLWDISEM--LCVRTFTKLEWPVR  216 (293)
Q Consensus       140 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~gs~d~~i~iwd~~~~--~~~~~~~~~~~~v~  216 (293)
                      .....                     +...-.....++++|+++.|. +-+..+.|..|++...  .....+..... ..
T Consensus       175 ~~~~~---------------------~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~  232 (322)
T 2fp8_A          175 KETTL---------------------LLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PG  232 (322)
T ss_dssp             TEEEE---------------------EEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EE
T ss_pred             CEEEE---------------------eccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CC
Confidence            22110                     000001123578899998554 4466789999998641  01122222223 78


Q ss_pred             EEEEccCCCEEEEecC----------CCcEEEEEcCCCCEEEEEec
Q 022716          217 TISFSHTGDYIASASE----------DLFIDISNVHTGRTVHQIPC  252 (293)
Q Consensus       217 ~l~~sp~~~~l~s~s~----------d~~i~iw~~~~~~~~~~~~~  252 (293)
                      .+++.++|++.++...          .+.|..+|. .++.+..+..
T Consensus       233 gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~  277 (322)
T 2fp8_A          233 NIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPL  277 (322)
T ss_dssp             EEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEEC
T ss_pred             CeEECCCCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEEC
Confidence            8999999987766544          466788886 4776666643

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.52  E-value=0.00012  Score=60.43  Aligned_cols=196  Identities=10%  Similarity=-0.018  Sum_probs=114.5

Q ss_pred             cEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEE--eeC-CcCCeeEEEEcC-CCCCEEEEEeC----------
Q 022716           22 KVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIE--LRG-HADSVDQLCWDP-KHADLIATASG----------   87 (293)
Q Consensus        22 ~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~--~~~-h~~~i~~~~~~~-~~~~~l~s~~~----------   87 (293)
                      .+..+++++++..|..+...+.+..+|.+..   ....+.  ..+ .......+++.+ ++ .++++-..          
T Consensus        81 ~p~gi~~~~~~g~l~v~d~~~~i~~~d~~~g---~~~~~~~~~~~~~~~~p~~i~~d~~~G-~l~v~d~~~~~~~~~~~~  156 (322)
T 2fp8_A           81 RTYDISYNLQNNQLYIVDCYYHLSVVGSEGG---HATQLATSVDGVPFKWLYAVTVDQRTG-IVYFTDVSTLYDDRGVQQ  156 (322)
T ss_dssp             CEEEEEEETTTTEEEEEETTTEEEEECTTCE---ECEEEESEETTEECSCEEEEEECTTTC-CEEEEESCSSCCTTCHHH
T ss_pred             CCceEEEcCCCCcEEEEECCCCEEEEeCCCC---EEEEecccCCCCcccccceEEEecCCC-EEEEECCcccccccccce
Confidence            5788999983334555555555777775421   111111  111 113467788888 64 56665432          


Q ss_pred             -------CCeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEE-eCCCeEEEEEccccceeeeecccceeeeeEEec
Q 022716           88 -------DKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVG-NRDDELTILDVRKFKPIHRRKFGYEVNEIAWNM  159 (293)
Q Consensus        88 -------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~  159 (293)
                             ++.|..+|..+++.......-..+..++++|+++.|.++ +..++|..+++.......       ..      
T Consensus       157 ~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~-------~~------  223 (322)
T 2fp8_A          157 IMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGT-------AE------  223 (322)
T ss_dssp             HHHHTCCCEEEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTC-------EE------
T ss_pred             ehcccCCCceEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCc-------cc------
Confidence                   367888888776643332222445679999999866655 456899999986422100       00      


Q ss_pred             CCCEEEEecCCCCEEEEEECCCCCEEEEecC----------CCcEEEEeCCCCEEEEEeeccC----CCeeEEEEccCCC
Q 022716          160 TGEMFFLTTGNAGCYCIAIDPMGRYFAVGSA----------DSLVSLWDISEMLCVRTFTKLE----WPVRTISFSHTGD  225 (293)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~----------d~~i~iwd~~~~~~~~~~~~~~----~~v~~l~~sp~~~  225 (293)
                          .+. .... ...++++++|+++++...          .+.|..+|.. ++.+..+....    ..+..+++ .+++
T Consensus       224 ----~~~-~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~  295 (322)
T 2fp8_A          224 ----VLV-KIPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGL  295 (322)
T ss_dssp             ----EEE-ECSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTE
T ss_pred             ----eEE-eCCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCE
Confidence                000 0111 456788899887666544          4668888864 55555554332    34666666 4666


Q ss_pred             EEEEecCCCcEEEEEcC
Q 022716          226 YIASASEDLFIDISNVH  242 (293)
Q Consensus       226 ~l~s~s~d~~i~iw~~~  242 (293)
                      +.++....+.|..++..
T Consensus       296 L~v~~~~~~~i~~~~~~  312 (322)
T 2fp8_A          296 LYIGTLFHGSVGILVYD  312 (322)
T ss_dssp             EEEECSSCSEEEEEEC-
T ss_pred             EEEeecCCCceEEEecc
Confidence            66666677778887764

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.52  E-value=2.2e-05  Score=70.34  Aligned_cols=243  Identities=12%  Similarity=0.042  Sum_probs=138.7

Q ss_pred             CCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcC--CeeE-EEEcCCCCCEEEEEeC------CCeEEEEeCCCCeee
Q 022716           32 GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHAD--SVDQ-LCWDPKHADLIATASG------DKTVRLWDARSGKCS  102 (293)
Q Consensus        32 ~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~--~i~~-~~~~~~~~~~l~s~~~------d~~i~vwd~~~~~~~  102 (293)
                      +..++.++.|+.+..+|..+..  ......+..+..  .+.+ ...  .+ ..++.++.      ++.|..+|.++++.+
T Consensus       115 ~~~v~v~~~dg~l~alD~~tG~--~~W~~~~~~~~~~~~~~~~P~v--~~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~~  189 (571)
T 2ad6_A          115 AGQIVKKQANGHLLALDAKTGK--INWEVEVCDPKVGSTLTQAPFV--AK-DTVLMGCSGAELGVRGAVNAFDLKTGELK  189 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCC--EEEEEECCCGGGTCBCCSCCEE--ET-TEEEEECBCGGGTCCCEEEEEETTTCCEE
T ss_pred             CCEEEEEeCCCEEEEEECCCCC--EEEEecCCCCCccceeccCCEE--EC-CEEEEEecCCccCCCCEEEEEECCCCcEE
Confidence            4567778889999999886432  233333332211  1111 011  12 34444544      789999999999877


Q ss_pred             eeeeecCce---------------------------------------EEEEEcCCCCEEEEEeCC--------------
Q 022716          103 QQAELSGEN---------------------------------------INITYKPDGTHIAVGNRD--------------  129 (293)
Q Consensus       103 ~~~~~~~~~---------------------------------------~~~~~~~~~~~l~~~~~d--------------  129 (293)
                      -.+......                                       ..+++.++...+..++.+              
T Consensus       190 W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~  269 (571)
T 2ad6_A          190 WRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNK  269 (571)
T ss_dssp             EEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCT
T ss_pred             EEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCce
Confidence            655432211                                       124566666666666532              


Q ss_pred             --CeEEEEEccccceeeeeccc-ceeeeeEEecCCCEEEEecCCCCEEEEEECCCCC---EEEEecCCCcEEEEeCCCCE
Q 022716          130 --DELTILDVRKFKPIHRRKFG-YEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGR---YFAVGSADSLVSLWDISEML  203 (293)
Q Consensus       130 --~~i~l~d~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~gs~d~~i~iwd~~~~~  203 (293)
                        +.+..+|.++.+.+-..... .+.    |+..       ....++ .+...++|+   .++.++.+|.+.++|.++++
T Consensus       270 y~~~v~Ald~~tG~~~W~~~~~~~d~----~d~~-------~~~~p~-l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~  337 (571)
T 2ad6_A          270 WTMTIWGRDLDTGMAKWGYQKTPHDE----WDFA-------GVNQMV-LTDQPVNGKMTPLLSHIDRNGILYTLNRENGN  337 (571)
T ss_dssp             TTTEEEEEETTTCCEEEEEESSTTCS----SCCC-------CCCCCE-EEEEEETTEEEEEEEEECTTSEEEEEETTTCC
T ss_pred             eEEEEEEEecCCCcEEEEecCCCCcc----cccc-------cCCCCE-EEecccCCcEEEEEEEeCCCcEEEEEECCCCC
Confidence              25777887776543322211 000    0000       001111 122224663   57788899999999999988


Q ss_pred             EEEEeeccC-------------CCe--------------------------eEEEEccCCCEEEEec-------------
Q 022716          204 CVRTFTKLE-------------WPV--------------------------RTISFSHTGDYIASAS-------------  231 (293)
Q Consensus       204 ~~~~~~~~~-------------~~v--------------------------~~l~~sp~~~~l~s~s-------------  231 (293)
                      .+-...-..             .++                          ..++|+|+...++..+             
T Consensus       338 ~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~  417 (571)
T 2ad6_A          338 LIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLP  417 (571)
T ss_dssp             EEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCC
T ss_pred             EEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccc
Confidence            765543211             111                          2467888877765543             


Q ss_pred             ------------------------CCCcEEEEEcCCCCEEEEEecCCCcceeEECCCCCeEEEEEcCCCCCCCCcceE-E
Q 022716          232 ------------------------EDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVF-R  286 (293)
Q Consensus       232 ------------------------~d~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~-~  286 (293)
                                              .++.+..+|..+++.+-++....++........+..+.+++.|+.++.+|-.+. .
T Consensus       418 ~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~  497 (571)
T 2ad6_A          418 YRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKE  497 (571)
T ss_dssp             CCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             cccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccceeEEECCCEEEEEcCCCeEEEEECCCCCE
Confidence                                    357899999999998877766555555444445667777888877776664333 3


Q ss_pred             EEeee
Q 022716          287 IYGFE  291 (293)
Q Consensus       287 ~~~~~  291 (293)
                      +|.++
T Consensus       498 lw~~~  502 (571)
T 2ad6_A          498 LWNFK  502 (571)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            45543

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.51  E-value=0.00027  Score=57.87  Aligned_cols=232  Identities=12%  Similarity=0.065  Sum_probs=132.1

Q ss_pred             ccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCC-C-eEEEEeCCC
Q 022716           21 KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD-K-TVRLWDARS   98 (293)
Q Consensus        21 ~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d-~-~i~vwd~~~   98 (293)
                      .....++|+++|+.+++-..++.|..||.+..   .......   ......+++.+++ .++++.... + .|..+|..+
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~---~~~~~~~---~~~p~gia~~~dG-~l~vad~~~~~~~v~~~d~~~  104 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN---QQIHATV---EGKVSGLAFTSNG-DLVATGWNADSIPVVSLVKSD  104 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCC---EEEEEEC---SSEEEEEEECTTS-CEEEEEECTTSCEEEEEECTT
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCc---eEEEEeC---CCCceeEEEcCCC-cEEEEeccCCcceEEEEcCCC
Confidence            56789999999987777767899988886531   1111122   2357788888875 466554432 2 466677777


Q ss_pred             CeeeeeeeecC--ceEEEEEcCCCCEEEEEeCCCeEEEEEccccce-eeeecccceeeeeEEecCCCEEEEecCCCCEEE
Q 022716           99 GKCSQQAELSG--ENINITYKPDGTHIAVGNRDDELTILDVRKFKP-IHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYC  175 (293)
Q Consensus        99 ~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  175 (293)
                      ++.........  ....++..+++..+++...++.+..+|...... +.... +. ...  -.+.+       .-.....
T Consensus       105 g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~-~~-~~~--~~~~~-------~~~~png  173 (306)
T 2p4o_A          105 GTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEH-PM-LAR--SNSES-------VFPAANG  173 (306)
T ss_dssp             SCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEEC-GG-GSC--SSTTC-------CSCSEEE
T ss_pred             CeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEEC-Cc-ccc--ccccC-------CCCcCCC
Confidence            76543332211  123344455554455444578888888754211 10000 00 000  00000       0011222


Q ss_pred             EEECCCCCE-EEEecCCCcEEEEeCCC-CEE--EEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEE--E
Q 022716          176 IAIDPMGRY-FAVGSADSLVSLWDISE-MLC--VRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVH--Q  249 (293)
Q Consensus       176 ~~~~~~~~~-l~~gs~d~~i~iwd~~~-~~~--~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~--~  249 (293)
                      +  +|+++. +++-+..+.|..|++.. +..  ...+... .....+++.++|++.++....+.|.+++.. ++...  .
T Consensus       174 i--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~-~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~  249 (306)
T 2p4o_A          174 L--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ-TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQ  249 (306)
T ss_dssp             E--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES-CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEEC
T ss_pred             c--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc-CCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEee
Confidence            3  567754 45556678899999864 211  1122111 346779999999988887778889999975 65432  2


Q ss_pred             EecC-CCcceeEEC---CCCCeEEEEEcC
Q 022716          250 IPCR-AAMNSVEWN---PKYNLLAYAGDD  274 (293)
Q Consensus       250 ~~~~-~~i~~~~~s---p~~~~la~~~~d  274 (293)
                      +... ...++++|.   |+++.|..++..
T Consensus       250 ~~~~~~~p~~~a~~g~~~d~~~LyVt~~~  278 (306)
T 2p4o_A          250 AEQGVIGSTAVAFGQTEGDCTAIYVVTNG  278 (306)
T ss_dssp             GGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             cccccCCceEEEEecccCCCCEEEEECCC
Confidence            3322 347889998   887766665543

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.50  E-value=0.00022  Score=56.70  Aligned_cols=198  Identities=12%  Similarity=0.205  Sum_probs=121.3

Q ss_pred             EeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeeeec--CceEEEEEcCCCCEEEEEeCCCeEEEEEcc
Q 022716           61 ELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELS--GENINITYKPDGTHIAVGNRDDELTILDVR  138 (293)
Q Consensus        61 ~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~  138 (293)
                      .+++-...+..++++|++..+++....++.|...|.. ++....+...  ...-.+++.+++.++++.-.++.+.++++.
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~   99 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT   99 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence            3556666799999999765566667778889999987 7776666544  356678888888777776677888888876


Q ss_pred             ccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCC---C---CEEEEE--ee-
Q 022716          139 KFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDIS---E---MLCVRT--FT-  209 (293)
Q Consensus       139 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~---~---~~~~~~--~~-  209 (293)
                      .......      +..+.+.. +    ....+...-.++++|.+..|.++.......+|.++   .   ...+..  +. 
T Consensus       100 ~~~~i~~------~~~~~~~~-~----~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~  168 (255)
T 3qqz_A          100 PNSEVKI------LKKIKIPL-Q----ESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQR  168 (255)
T ss_dssp             TTCCEEE------EEEEECCC-S----SCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHH
T ss_pred             CCCeeee------eeeecccc-c----cccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhcc
Confidence            5432110      00000000 0    00123334567888887666555554444454442   1   111110  00 


Q ss_pred             -ccCCCeeEEEEccCCC-EEEEecCCCcEEEEEcCCCCEEEEEecCCC----------cceeEECCCCCeEEEE
Q 022716          210 -KLEWPVRTISFSHTGD-YIASASEDLFIDISNVHTGRTVHQIPCRAA----------MNSVEWNPKYNLLAYA  271 (293)
Q Consensus       210 -~~~~~v~~l~~sp~~~-~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~----------i~~~~~sp~~~~la~~  271 (293)
                       .....+.+++|.|... +++.......+.+.|.. |+.+..+.....          -..|+|.|+|++++++
T Consensus       169 ~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvs  241 (255)
T 3qqz_A          169 QFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVS  241 (255)
T ss_dssp             TCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEE
T ss_pred             ccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEc
Confidence             1234678999999754 55666677888899964 666666655432          2458999999876663

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.50  E-value=2.2e-05  Score=71.74  Aligned_cols=236  Identities=12%  Similarity=0.104  Sum_probs=139.4

Q ss_pred             CCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCc--CCeeE-EEEcCCCCCEEEEEeC------CCeEEEEeCCCCeee
Q 022716           32 GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHA--DSVDQ-LCWDPKHADLIATASG------DKTVRLWDARSGKCS  102 (293)
Q Consensus        32 ~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~--~~i~~-~~~~~~~~~~l~s~~~------d~~i~vwd~~~~~~~  102 (293)
                      +..++.++.|+.|..+|..+..  ...........  ..+.. ...  .+ ..++.+..      ++.|..+|..+++.+
T Consensus       117 ~~~v~v~~~dg~l~alD~~tG~--~~W~~~~~~~~~~~~~~~~P~v--~~-~~v~vg~~~~~~~~~g~v~a~D~~tG~~~  191 (668)
T 1kv9_A          117 GDKVYVGTLDGRLIALDAKTGK--AIWSQQTTDPAKPYSITGAPRV--VK-GKVIIGNGGAEYGVRGFVSAYDADTGKLA  191 (668)
T ss_dssp             BTEEEEECTTSEEEEEETTTCC--EEEEEECSCTTSSCBCCSCCEE--ET-TEEEECCBCTTTCCBCEEEEEETTTCCEE
T ss_pred             CCEEEEEcCCCEEEEEECCCCC--EeeeeccCCCCCcceecCCCEE--EC-CEEEEeCCCCCcCCCCEEEEEECCCCcEE
Confidence            4567888889999999986532  22333221110  01110 011  12 24444432      589999999999877


Q ss_pred             eeeeec-Cc-------------------------------eEEEEEcCCCCEEEEEeCCCe-------------------
Q 022716          103 QQAELS-GE-------------------------------NINITYKPDGTHIAVGNRDDE-------------------  131 (293)
Q Consensus       103 ~~~~~~-~~-------------------------------~~~~~~~~~~~~l~~~~~d~~-------------------  131 (293)
                      -.+... ..                               -..+++.|++..++.++.++.                   
T Consensus       192 W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~  271 (668)
T 1kv9_A          192 WRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSS  271 (668)
T ss_dssp             EEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTE
T ss_pred             EEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeee
Confidence            655421 00                               013678888888888876653                   


Q ss_pred             EEEEEccccceeeeeccc-ceeeeeEEecCCCEEEEecCCCCEEEEEECCCCC---EEEEecCCCcEEEEeCCCCEEEEE
Q 022716          132 LTILDVRKFKPIHRRKFG-YEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGR---YFAVGSADSLVSLWDISEMLCVRT  207 (293)
Q Consensus       132 i~l~d~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~gs~d~~i~iwd~~~~~~~~~  207 (293)
                      |..+|+++.+..-..... ...    |+..        ...+.....+..+++   .++.++.+|.++++|.++++.+..
T Consensus       272 v~AlD~~tG~~~W~~~~~~~~~----wd~~--------~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~  339 (668)
T 1kv9_A          272 ILAIRPDTGKLAWHYQVTPGDS----WDFT--------ATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISA  339 (668)
T ss_dssp             EEEECTTTCCEEEEEESSTTCC----SCCC--------CCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEE
T ss_pred             EEEEcCCCCceeeEeecCCCcc----cccc--------CCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecc
Confidence            777787776644332211 000    1100        001122222223554   688999999999999999987743


Q ss_pred             eeccC------------CC------------------------eeEEEEccCCCEEEEe---------------------
Q 022716          208 FTKLE------------WP------------------------VRTISFSHTGDYIASA---------------------  230 (293)
Q Consensus       208 ~~~~~------------~~------------------------v~~l~~sp~~~~l~s~---------------------  230 (293)
                      .....            .+                        ...++|+|+...++..                     
T Consensus       340 ~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~  419 (668)
T 1kv9_A          340 EKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAF  419 (668)
T ss_dssp             EESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSC
T ss_pred             ccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeecccccccccc
Confidence            32111            00                        0126778876665431                     


Q ss_pred             ---------------cCCCcEEEEEcCCCCEEEEEecCCCcceeEECCCCCeEEEEEcCCCCCCCCcce
Q 022716          231 ---------------SEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGV  284 (293)
Q Consensus       231 ---------------s~d~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~  284 (293)
                                     ..++.|.-||..+++.+-+.+...+.....+...+.++++++.|+.++.++..+
T Consensus       420 ~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~t  488 (668)
T 1kv9_A          420 NTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADK  488 (668)
T ss_dssp             CCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTT
T ss_pred             ccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEECCcccchhhhhhc
Confidence                           134789999999999887777666666666777788888888877666655433

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.43  E-value=0.00016  Score=67.00  Aligned_cols=113  Identities=16%  Similarity=0.142  Sum_probs=70.0

Q ss_pred             cEEEEEEC-CCCCeEEEEeC-CC----cEEEeecCCC-CCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCC----Ce
Q 022716           22 KVHSVAWN-CTGTKLASGSV-DQ----TARVWHIEPH-GHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD----KT   90 (293)
Q Consensus        22 ~v~~l~~s-~~~~~l~s~~~-dg----~v~iw~~~~~-~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d----~~   90 (293)
                      .+...+|| |||++||.+.. +|    +|+++|++.. .. ...  .+.   .....+.|+|++..++++...+    ..
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~-l~~--~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~  248 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQT-IAD--KVS---GTNGEIVWGPDHTSLFYVTKDETLRENK  248 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCC-CCC--CEE---EECSCCEECSSTTEEEEEEECTTCCEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEe-CCc--ccc---CceeeEEEecCCCEEEEEEECCCCCCCE
Confidence            68889999 99999885443 23    5999998754 21 000  111   1134678999875555554322    35


Q ss_pred             EEEEeCCCCeee--eeeee--cCceEEEEEcCCCCEEEEEeC---CCeEEEEEcccc
Q 022716           91 VRLWDARSGKCS--QQAEL--SGENINITYKPDGTHIAVGNR---DDELTILDVRKF  140 (293)
Q Consensus        91 i~vwd~~~~~~~--~~~~~--~~~~~~~~~~~~~~~l~~~~~---d~~i~l~d~~~~  140 (293)
                      |.++++.++...  ..++.  ......+.|+|||++|+....   ...+.++|+.+.
T Consensus       249 v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~  305 (751)
T 2xe4_A          249 VWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG  305 (751)
T ss_dssp             EEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred             EEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence            778888766422  22221  223457889999999887663   346777887653

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.41  E-value=8.8e-06  Score=67.16  Aligned_cols=226  Identities=12%  Similarity=0.016  Sum_probs=125.1

Q ss_pred             EEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeee
Q 022716           25 SVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQ  104 (293)
Q Consensus        25 ~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~  104 (293)
                      +.....+| .+..++.++.|..|| ....  ...  ....+...+.++...++  ..++.++.+  +..+|. +++....
T Consensus        24 ~~~~d~~g-~l~v~t~~~~l~~~d-~~g~--~~~--~~~~~~~~~~~~~~~~~--g~l~v~t~~--l~~~d~-~g~~~~~   92 (330)
T 3hxj_A           24 SPILAKNG-TIYLGSSNKNLYAIN-TDGS--VKW--FFKSGEIIECRPSIGKD--GTIYFGSDK--VYAINP-DGTEKWR   92 (330)
T ss_dssp             CCEECTTS-CEECSSTTTTTEEEC-TTSC--EEE--SSCGGGEEEECCEETTT--TEECCSSCE--EEEECC-CGGGGGG
T ss_pred             CceEccCC-eEEEEcCCCEEEEEC-CCCc--EEE--EEecCCCcccceEEecC--CcEEEecCc--EEEECC-CCcEEEE
Confidence            34444555 566777888899998 4321  111  11122233455555443  345545545  888885 5543332


Q ss_pred             eeecCceE-EEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCC
Q 022716          105 AELSGENI-NITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGR  183 (293)
Q Consensus       105 ~~~~~~~~-~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (293)
                      ........ ...+.  +..+.+++.++.+..+|.+ .+.......+                    ...+.++...+++.
T Consensus        93 ~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~--------------------~~~~~~~~~~~~g~  149 (330)
T 3hxj_A           93 FDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTK--------------------KAIYATPIVSEDGT  149 (330)
T ss_dssp             SCC-----CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECS--------------------SCCCSCCEECTTSC
T ss_pred             EECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCC--------------------CceeeeeEEcCCCE
Confidence            22222111 12222  4567888888999999876 3332221111                    11122344555666


Q ss_pred             EEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEec-CCCcceeEEC
Q 022716          184 YFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPC-RAAMNSVEWN  262 (293)
Q Consensus       184 ~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~-~~~i~~~~~s  262 (293)
                       +..++.++.|..+|.. ++.+..+......+.++.+.+++...+..   +.+..+| .+++.+..... ...+.++...
T Consensus       150 -l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t---~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~  223 (330)
T 3hxj_A          150 -IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS---DKVYAIN-PDGTEKWNFYAGYWTVTRPAIS  223 (330)
T ss_dssp             -EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES---SSEEEEC-TTSCEEEEECCSSCCCSCCEEC
T ss_pred             -EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe---CEEEEEC-CCCcEEEEEccCCcceeceEEC
Confidence             5557777889999988 66555555444566777777777755544   7788888 67776655543 3457788888


Q ss_pred             CCCCeEEEEEcCCCCCCCCcceEEEEeee
Q 022716          263 PKYNLLAYAGDDKNKYQADEGVFRIYGFE  291 (293)
Q Consensus       263 p~~~~la~~~~d~~~~~~~~~~~~~~~~~  291 (293)
                      +++.+.+ ++.++.++..+...-++|.+.
T Consensus       224 ~~g~l~v-~t~~~gl~~~~~~g~~~~~~~  251 (330)
T 3hxj_A          224 EDGTIYV-TSLDGHLYAINPDGTEKWRFK  251 (330)
T ss_dssp             TTSCEEE-EETTTEEEEECTTSCEEEEEE
T ss_pred             CCCeEEE-EcCCCeEEEECCCCCEeEEee
Confidence            8775544 444555555444333445543

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.38  E-value=1.5e-05  Score=65.79  Aligned_cols=221  Identities=16%  Similarity=0.077  Sum_probs=123.3

Q ss_pred             ccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCe
Q 022716           21 KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGK  100 (293)
Q Consensus        21 ~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~  100 (293)
                      ..+.++...++|. |..++.+  +..+|...   .....  ..............   ...++.++.++.+..+|.. ++
T Consensus        60 ~~~~~~~~~~~g~-l~v~t~~--l~~~d~~g---~~~~~--~~~~~~~~~~~~~~---~~~l~v~t~~~~l~~~d~~-g~  127 (330)
T 3hxj_A           60 IIECRPSIGKDGT-IYFGSDK--VYAINPDG---TEKWR--FDTKKAIVSDFTIF---EDILYVTSMDGHLYAINTD-GT  127 (330)
T ss_dssp             EEEECCEETTTTE-ECCSSCE--EEEECCCG---GGGGG--SCC-----CCEEEE---TTEEEEECTTSEEEEECTT-SC
T ss_pred             CcccceEEecCCc-EEEecCc--EEEECCCC---cEEEE--EECCCCcccCceEE---CCEEEEEecCCEEEEEcCC-CC
Confidence            4456777776665 4445444  77776421   11111  11111111222222   2456678889999999988 66


Q ss_pred             eeeeeeecCc-eEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEEC
Q 022716          101 CSQQAELSGE-NINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAID  179 (293)
Q Consensus       101 ~~~~~~~~~~-~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  179 (293)
                      .......... ..++...+++. +..++.++.+..+|.. .+.......+                    ...+.++..+
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~--------------------~~~~~~~~~d  185 (330)
T 3hxj_A          128 EKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTN--------------------DAITSAASIG  185 (330)
T ss_dssp             EEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECS--------------------SCCCSCCEEC
T ss_pred             EEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecC--------------------CCceeeeEEc
Confidence            5544443333 23445556665 6667788999999977 4432221111                    1122344556


Q ss_pred             CCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEecCCC-cce
Q 022716          180 PMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAA-MNS  258 (293)
Q Consensus       180 ~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~-i~~  258 (293)
                      +++..++..   +.|..+| .+++.+.........+.++...++|.. ..++.++.+..++. +++.+..+..... +..
T Consensus       186 ~~g~l~v~t---~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l-~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~  259 (330)
T 3hxj_A          186 KDGTIYFGS---DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTI-YVTSLDGHLYAINP-DGTEKWRFKTGKRIESS  259 (330)
T ss_dssp             TTCCEEEES---SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCE-EEEETTTEEEEECT-TSCEEEEEECSSCCCSC
T ss_pred             CCCEEEEEe---CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeE-EEEcCCCeEEEECC-CCCEeEEeeCCCCcccc
Confidence            677755544   7899999 666655555544456788888888754 44556777777774 5666665554333 445


Q ss_pred             eEECCCCCeEEEEEcCCCCCCCCc
Q 022716          259 VEWNPKYNLLAYAGDDKNKYQADE  282 (293)
Q Consensus       259 ~~~sp~~~~la~~~~d~~~~~~~~  282 (293)
                      +...+++. |..++.++.++..+.
T Consensus       260 ~~~~~~g~-l~v~t~~ggl~~~d~  282 (330)
T 3hxj_A          260 PVIGNTDT-IYFGSYDGHLYAINP  282 (330)
T ss_dssp             CEECTTSC-EEEECTTCEEEEECT
T ss_pred             ceEcCCCe-EEEecCCCCEEEECC
Confidence            66665554 444555555555443

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.37  E-value=0.00021  Score=65.29  Aligned_cols=199  Identities=13%  Similarity=0.171  Sum_probs=118.8

Q ss_pred             EEEcCCCCCEEEEEeCCC-------------------eEEEEeCCCCeeeeeeeec----------CceEEEEEcCCCC-
Q 022716           72 LCWDPKHADLIATASGDK-------------------TVRLWDARSGKCSQQAELS----------GENINITYKPDGT-  121 (293)
Q Consensus        72 ~~~~~~~~~~l~s~~~d~-------------------~i~vwd~~~~~~~~~~~~~----------~~~~~~~~~~~~~-  121 (293)
                      +++.|+. .+++.++.++                   .|..+|.++++.+-.++..          .+..-..+..+|+ 
T Consensus       235 ~a~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~  313 (668)
T 1kv9_A          235 MAYDPEL-DLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKP  313 (668)
T ss_dssp             EEEETTT-TEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEE
T ss_pred             eEEcCCC-CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcE
Confidence            5666653 5677777665                   3889999999887666542          2222233344665 


Q ss_pred             --EEEEEeCCCeEEEEEccccceeeeecccceeeeeEEec-------------CCCEEEEecCC---CCEEEEEECCCCC
Q 022716          122 --HIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNM-------------TGEMFFLTTGN---AGCYCIAIDPMGR  183 (293)
Q Consensus       122 --~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~-------------~~~~~~~~~~~---~~~~~~~~~~~~~  183 (293)
                        .++.++.+|.+.++|.++.+.+....+.........++             .+.........   ..-..++++|+..
T Consensus       314 ~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g  393 (668)
T 1kv9_A          314 RKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTG  393 (668)
T ss_dssp             EEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTT
T ss_pred             EEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCC
Confidence              68888999999999999888764433321000000000             00000000000   0001134444433


Q ss_pred             EEEE------------------------------------ecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEE
Q 022716          184 YFAV------------------------------------GSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYI  227 (293)
Q Consensus       184 ~l~~------------------------------------gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l  227 (293)
                      .+.+                                    ...+|.|..||+.+++.+-+.... .+.....+...+.++
T Consensus       394 ~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~v  472 (668)
T 1kv9_A          394 LVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP-THWNGGTLSTAGNLV  472 (668)
T ss_dssp             EEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEE
T ss_pred             EEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCC-CCCcCceeEeCCCEE
Confidence            3222                                    224588999999999876555433 344444455678899


Q ss_pred             EEecCCCcEEEEEcCCCCEEEEEecCCCcc--eeEECCCCC-eEEEEE
Q 022716          228 ASASEDLFIDISNVHTGRTVHQIPCRAAMN--SVEWNPKYN-LLAYAG  272 (293)
Q Consensus       228 ~s~s~d~~i~iw~~~~~~~~~~~~~~~~i~--~~~~sp~~~-~la~~~  272 (293)
                      +.++.|+.++.+|..+|+.+..+.....+.  -+.+..+|. +++.++
T Consensus       473 f~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~yva~~~  520 (668)
T 1kv9_A          473 FQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMA  520 (668)
T ss_dssp             EEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred             EEECCcccchhhhhhcChhheEecCCCCcccCceEEEECCEEEEEEEe
Confidence            999999999999999999998877655443  456656675 555554

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.33  E-value=0.00029  Score=63.34  Aligned_cols=110  Identities=16%  Similarity=0.139  Sum_probs=60.7

Q ss_pred             CCeEEEEeC-CCcEEEeec-CCCCCCceeEEEeeCCcC---------CeeEEEEcCCCC---CEEEEEeCCCeEEEEeCC
Q 022716           32 GTKLASGSV-DQTARVWHI-EPHGHGKVKDIELRGHAD---------SVDQLCWDPKHA---DLIATASGDKTVRLWDAR   97 (293)
Q Consensus        32 ~~~l~s~~~-dg~v~iw~~-~~~~~~~~~~~~~~~h~~---------~i~~~~~~~~~~---~~l~s~~~d~~i~vwd~~   97 (293)
                      +..+..++. ++.|..+|. .+.  .............         ....+.+.|.+.   ..++.++.|+.+.-+|.+
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG--~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~  139 (599)
T 1w6s_A           62 DGKMYIHTSFPNNTFALGLDDPG--TILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAE  139 (599)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTT--SEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETT
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCC--cEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECC
Confidence            445666666 788888887 542  1222222211100         011233422222   226778889999999999


Q ss_pred             CCeeeeeeeecC-----ceEE-EEEcCCCCEEEEEe------CCCeEEEEEccccceeee
Q 022716           98 SGKCSQQAELSG-----ENIN-ITYKPDGTHIAVGN------RDDELTILDVRKFKPIHR  145 (293)
Q Consensus        98 ~~~~~~~~~~~~-----~~~~-~~~~~~~~~l~~~~------~d~~i~l~d~~~~~~~~~  145 (293)
                      +++.+-......     ...+ ... .++ .+++++      .++.|..+|.++.+.+-+
T Consensus       140 TG~~~W~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~  197 (599)
T 1w6s_A          140 TGETVWKVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWR  197 (599)
T ss_dssp             TCCEEEEEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEE
T ss_pred             CCCEEEeecCCCCCccceeecCCEE-ECC-EEEEEecccccCCCCeEEEEECCCCcEEEE
Confidence            998766554332     1111 111 133 455555      378999999987765433

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.29  E-value=0.00016  Score=67.09  Aligned_cols=158  Identities=13%  Similarity=0.098  Sum_probs=88.4

Q ss_pred             CeeEEEEc-CCCCCEEEEEeCCC----eEEEEeCCCC-eeeeeeeecCceEEEEEcCCCCEEEEEeCCC-----eEEEEE
Q 022716           68 SVDQLCWD-PKHADLIATASGDK----TVRLWDARSG-KCSQQAELSGENINITYKPDGTHIAVGNRDD-----ELTILD  136 (293)
Q Consensus        68 ~i~~~~~~-~~~~~~l~s~~~d~----~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~-----~i~l~d  136 (293)
                      .+....|+ |++..+.++...+|    .|+++|+.++ +.+.. ........++|+|||+.|+....+.     .|..++
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~  253 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-KVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHV  253 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-CEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-cccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEE
Confidence            46778999 98655555555443    4999999988 53211 1111233578999999888877652     456666


Q ss_pred             ccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecC---CCcEEEEeCCCC--EE-EEEee-
Q 022716          137 VRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSA---DSLVSLWDISEM--LC-VRTFT-  209 (293)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~---d~~i~iwd~~~~--~~-~~~~~-  209 (293)
                      +.+......         +        ++-.........+.++|++++|+..+.   ...|.++|+.++  .. +..+. 
T Consensus       254 lgt~~~~~~---------l--------v~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~  316 (751)
T 2xe4_A          254 MGKLQSEDV---------C--------LYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRP  316 (751)
T ss_dssp             TTSCGGGCE---------E--------EEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSC
T ss_pred             CCCCchhcE---------E--------EEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeec
Confidence            554321100         0        010111122346788999998776552   346888888764  22 12332 


Q ss_pred             ccCCCeeEEEEccCCCEEEEecCC----CcEEEEEcCC
Q 022716          210 KLEWPVRTISFSHTGDYIASASED----LFIDISNVHT  243 (293)
Q Consensus       210 ~~~~~v~~l~~sp~~~~l~s~s~d----~~i~iw~~~~  243 (293)
                      .......++.|+..+.+++....+    ..|..++..+
T Consensus       317 ~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~  354 (751)
T 2xe4_A          317 REKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQ  354 (751)
T ss_dssp             CCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTS
T ss_pred             CCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCC
Confidence            233444555554444444444333    3567777764

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.27  E-value=0.0016  Score=56.18  Aligned_cols=154  Identities=11%  Similarity=0.121  Sum_probs=89.0

Q ss_pred             cEEEEEECC-CCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCC----eEEEEeC
Q 022716           22 KVHSVAWNC-TGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDK----TVRLWDA   96 (293)
Q Consensus        22 ~v~~l~~s~-~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~----~i~vwd~   96 (293)
                      ....++++| ++..|..+...+.|+.+|++..   ...  .+.........+++++++..++++-..++    .+.+.+.
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~---~v~--~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~  212 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKE---YVS--TVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR  212 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTT---EEE--EEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCC---EEE--EEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC
Confidence            457889998 4556666655578888887642   222  12223345678899887543555544222    2333332


Q ss_pred             CCCeee--eeeeecCceEEEEEcC-CCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCE
Q 022716           97 RSGKCS--QQAELSGENINITYKP-DGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGC  173 (293)
Q Consensus        97 ~~~~~~--~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  173 (293)
                       .+...  ..+.....+..+++.| +|..+++-...++|..+|+.........                   ........
T Consensus       213 -~g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~-------------------~~~~~~~P  272 (430)
T 3tc9_A          213 -ESGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLF-------------------TIQDSGWE  272 (430)
T ss_dssp             -GGTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEE-------------------ECSSSSCC
T ss_pred             -CCceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEE-------------------EcCCCCcc
Confidence             23221  2222234566788999 6666666667788999987654321110                   01111234


Q ss_pred             EEEEECCCCC-EEEEecCCCcEEEEeCC
Q 022716          174 YCIAIDPMGR-YFAVGSADSLVSLWDIS  200 (293)
Q Consensus       174 ~~~~~~~~~~-~l~~gs~d~~i~iwd~~  200 (293)
                      ..++++|+++ .+++-...+.|..++..
T Consensus       273 ~gia~~pdG~~lyv~d~~~~~I~~~~~d  300 (430)
T 3tc9_A          273 FHIQFHPSGNYAYIVVVNQHYILRSDYD  300 (430)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             eeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence            5788899998 45555667788887764

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.25  E-value=0.00062  Score=60.94  Aligned_cols=182  Identities=13%  Similarity=0.055  Sum_probs=105.0

Q ss_pred             eEEEEeCCCCeeeeeeeecC----------ceEEEEEcCCCC---EEEEEeCCCeEEEEEccccceeeeecccceee-ee
Q 022716           90 TVRLWDARSGKCSQQAELSG----------ENINITYKPDGT---HIAVGNRDDELTILDVRKFKPIHRRKFGYEVN-EI  155 (293)
Q Consensus        90 ~i~vwd~~~~~~~~~~~~~~----------~~~~~~~~~~~~---~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~-~v  155 (293)
                      .|..+|.++++.+-.++...          .+.-+...++|+   .++.++.+|.+.++|.++.+.+....+...+. .-
T Consensus       273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~  352 (571)
T 2ad6_A          273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFK  352 (571)
T ss_dssp             EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEE
T ss_pred             EEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccc
Confidence            58899999998776655321          122223335774   56778889999999998887765544332110 00


Q ss_pred             EEe-cCCCE--------------EEEecC---CCCEEEEEECCCCCEEEEe-----------------------------
Q 022716          156 AWN-MTGEM--------------FFLTTG---NAGCYCIAIDPMGRYFAVG-----------------------------  188 (293)
Q Consensus       156 ~~~-~~~~~--------------~~~~~~---~~~~~~~~~~~~~~~l~~g-----------------------------  188 (293)
                      ..+ ..+..              ......   ...-..++++|+...+.+.                             
T Consensus       353 ~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~  432 (571)
T 2ad6_A          353 KVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMY  432 (571)
T ss_dssp             EECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEE
T ss_pred             cccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceec
Confidence            000 00000              000000   0000123444444433332                             


Q ss_pred             --------cCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEecCCCcc--e
Q 022716          189 --------SADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMN--S  258 (293)
Q Consensus       189 --------s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~i~--~  258 (293)
                              ..++.|..||+.+++.+-++.. ..++.+..+...+..++.++.|+.++.+|.++|+.+..+.....+.  .
T Consensus       433 ~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~-~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p  511 (571)
T 2ad6_A          433 PGPNGPTKKEMGQIRAFDLTTGKAKWTKWE-KFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSP  511 (571)
T ss_dssp             ECTTSTTSCCCEEEEEECTTTCCEEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC
T ss_pred             cCccccCCCCCCeEEEEECCCCCEEEEecC-CCCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeee
Confidence                    2457899999999877655532 2233333334456677789999999999999999998887655443  3


Q ss_pred             eEECCCCCeEEEEE
Q 022716          259 VEWNPKYNLLAYAG  272 (293)
Q Consensus       259 ~~~sp~~~~la~~~  272 (293)
                      +.+..++.+++...
T Consensus       512 ~~~~~~G~~yv~~~  525 (571)
T 2ad6_A          512 MTYSFKGKQYIGSM  525 (571)
T ss_dssp             EEEEETTEEEEEEE
T ss_pred             EEEEECCEEEEEEE
Confidence            55667886555443

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.18  E-value=0.002  Score=53.79  Aligned_cols=198  Identities=7%  Similarity=-0.028  Sum_probs=114.4

Q ss_pred             cccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCC
Q 022716           20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG   99 (293)
Q Consensus        20 ~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~   99 (293)
                      ...-+|.+..++ .+|+.+. .+.|+..+++..   . ...... .......++|.+....++++-...+.|..+++...
T Consensus        33 ~d~~~C~~~~~~-~~ll~~~-~~~I~~i~~~g~---~-~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~  105 (349)
T 3v64_C           33 PDRRSCKALGPE-PVLLFAN-RIDIRQVLPHRS---E-YTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGS  105 (349)
T ss_dssp             TTSSCEEESSSC-CEEEEEC-BSCEEEECTTSC---C-EEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             CCCCcccccccC-ceeEeec-ccceEEEeCCCC---e-eEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCC
Confidence            344567766664 3444443 345776666532   1 111122 23446788998876667777667889999998765


Q ss_pred             eeeeeeee-cCceEEEEEcCCCCEE-EEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEE
Q 022716          100 KCSQQAEL-SGENINITYKPDGTHI-AVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIA  177 (293)
Q Consensus       100 ~~~~~~~~-~~~~~~~~~~~~~~~l-~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  177 (293)
                      ........ -..+..+++.+.+..| ++-...+.|.+.++.......                    ++...-.....++
T Consensus       106 ~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~--------------------l~~~~l~~P~~ia  165 (349)
T 3v64_C          106 NVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV--------------------LLWQSLEKPRAIA  165 (349)
T ss_dssp             SCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE--------------------EECTTCSCEEEEE
T ss_pred             CceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEE--------------------EEeCCCCCcceEE
Confidence            43322221 2345678888755444 455556788888876432111                    1111223456788


Q ss_pred             ECCCCCE-EEEecCC-CcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEE-EEecCCCcEEEEEcCCC
Q 022716          178 IDPMGRY-FAVGSAD-SLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYI-ASASEDLFIDISNVHTG  244 (293)
Q Consensus       178 ~~~~~~~-l~~gs~d-~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l-~s~s~d~~i~iw~~~~~  244 (293)
                      ++|.+.. +++-... +.|..+++............-...+.|+++|++..| ++-+..+.|..++....
T Consensus       166 vdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~  235 (349)
T 3v64_C          166 LHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS  235 (349)
T ss_dssp             EETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             EecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCC
Confidence            8885544 4444444 778888876432221122223457899999876665 44456678999987643

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.16  E-value=0.0022  Score=53.58  Aligned_cols=205  Identities=12%  Similarity=0.024  Sum_probs=120.0

Q ss_pred             ccEEEEEECCCCCeEE-EEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCC
Q 022716           21 KKVHSVAWNCTGTKLA-SGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG   99 (293)
Q Consensus        21 ~~v~~l~~s~~~~~l~-s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~   99 (293)
                      ..+..++|++.+..|. +-...+.|+.++++...   ...+ ..........+++.+.++.++++-...+.|.+.+++..
T Consensus        73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~---~~~~-~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~  148 (349)
T 3v64_C           73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSN---VEEV-VSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGA  148 (349)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS---CEEE-ECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             CceEEEEEeccccEEEEEeccCCceEEEecCCCC---ceEE-EeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCC
Confidence            3468899997666665 44457888888876432   1111 11122334567777666667777777889999998754


Q ss_pred             eeeeeee-ecCceEEEEEcCCCCEEEEEe-CC-CeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEE
Q 022716          100 KCSQQAE-LSGENINITYKPDGTHIAVGN-RD-DELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCI  176 (293)
Q Consensus       100 ~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-~d-~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  176 (293)
                      ....... .-..+..+++.|.+..|.... .. +.|...++........                    +...-.....+
T Consensus       149 ~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~--------------------~~~~~~~PnGl  208 (349)
T 3v64_C          149 HRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRII--------------------ADTHLFWPNGL  208 (349)
T ss_dssp             SCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEES--------------------CCSSCSCEEEE
T ss_pred             ceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEE--------------------EECCCCCcceE
Confidence            3322222 124567899998665555444 34 6777777654321110                    00112234567


Q ss_pred             EECCCCC-EEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEE
Q 022716          177 AIDPMGR-YFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQI  250 (293)
Q Consensus       177 ~~~~~~~-~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~  250 (293)
                      +++|++. ++++-+..+.|..+|+........+.........+++ ..+....+-...+.|...+..+|+.+..+
T Consensus       209 a~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i  282 (349)
T 3v64_C          209 TIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEII  282 (349)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred             EEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE-ECCEEEEecCCCCeEEEEEccCCCccEEe
Confidence            8887554 4444455678888887643322222222345677887 45556666667788888886677655444

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.16  E-value=0.0025  Score=54.02  Aligned_cols=206  Identities=12%  Similarity=0.028  Sum_probs=120.3

Q ss_pred             ccEEEEEECCCCCeEE-EEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCC
Q 022716           21 KKVHSVAWNCTGTKLA-SGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG   99 (293)
Q Consensus        21 ~~v~~l~~s~~~~~l~-s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~   99 (293)
                      ..+..++|++.+..|. +-...+.|+.++++...   ...+ ..........+++.+.++.++++-...+.|.+.+++..
T Consensus       116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~---~~~~-~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~  191 (386)
T 3v65_B          116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSN---VEEV-VSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGA  191 (386)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC---EEEE-ECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSC
T ss_pred             CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCC---cEEE-EeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCC
Confidence            4577899997666554 54557888888876421   1111 11112234566777665667777777788888887654


Q ss_pred             eeeeeeee-cCceEEEEEcCCCCEEEEEeC-C-CeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEE
Q 022716          100 KCSQQAEL-SGENINITYKPDGTHIAVGNR-D-DELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCI  176 (293)
Q Consensus       100 ~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~-d-~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  176 (293)
                      ........ -..+..+++.|.+..|..... . +.|..+++.......                    +....-.....|
T Consensus       192 ~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~--------------------~~~~~~~~PnGl  251 (386)
T 3v65_B          192 HRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRI--------------------IADTHLFWPNGL  251 (386)
T ss_dssp             SCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE--------------------EECSSCSCEEEE
T ss_pred             ceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEE--------------------EEECCCCCeeeE
Confidence            33222221 245678899987665555443 3 567777765422111                    111122234567


Q ss_pred             EECCCCC-EEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEe
Q 022716          177 AIDPMGR-YFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP  251 (293)
Q Consensus       177 ~~~~~~~-~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~  251 (293)
                      +++|++. ++++=+..+.|..+|+........+.........|++ ..+....+....+.|...+..+|+.+..+.
T Consensus       252 avd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~  326 (386)
T 3v65_B          252 TIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR  326 (386)
T ss_dssp             EEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             EEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence            8886554 4455455678888887643322222222345677888 455666676777888888876776555443

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=98.13  E-value=0.0026  Score=53.28  Aligned_cols=102  Identities=15%  Similarity=0.159  Sum_probs=58.8

Q ss_pred             cccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEE-Eee---CCcCCeeEEEEcCC---CCCEEEEEeCC----
Q 022716           20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDI-ELR---GHADSVDQLCWDPK---HADLIATASGD----   88 (293)
Q Consensus        20 ~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~-~~~---~h~~~i~~~~~~~~---~~~~l~s~~~d----   88 (293)
                      -.....++|.|+|+.++ +..+|.|++++ +.    ....+ .+.   .-......++++|+   +..++++-...    
T Consensus        30 l~~P~~ia~~pdG~l~V-~e~~g~I~~i~-~g----~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~  103 (352)
T 2ism_A           30 LEVPWALAFLPDGGMLI-AERPGRIRLFR-EG----RLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGL  103 (352)
T ss_dssp             CSCEEEEEECTTSCEEE-EETTTEEEEEE-TT----EEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSS
T ss_pred             CCCceEEEEcCCCeEEE-EeCCCeEEEEE-CC----CccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCC
Confidence            34677999999998555 45679999987 31    11111 111   11345678999986   44455554432    


Q ss_pred             -CeEEEEeCCCCee---eeeee-ec------CceEEEEEcCCCCEEEEEe
Q 022716           89 -KTVRLWDARSGKC---SQQAE-LS------GENINITYKPDGTHIAVGN  127 (293)
Q Consensus        89 -~~i~vwd~~~~~~---~~~~~-~~------~~~~~~~~~~~~~~l~~~~  127 (293)
                       ..|..++...+..   ...+. ..      .....++|.|||...++.+
T Consensus       104 ~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G  153 (352)
T 2ism_A          104 RNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG  153 (352)
T ss_dssp             EEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred             ccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence             5677777764321   11111 11      1234689999997665543

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.10  E-value=0.0035  Score=56.20  Aligned_cols=111  Identities=13%  Similarity=0.068  Sum_probs=70.3

Q ss_pred             CCC---CEEEEecCCCcEEEEeCCCCEEEEEeeccC-------------CC-----------------------------
Q 022716          180 PMG---RYFAVGSADSLVSLWDISEMLCVRTFTKLE-------------WP-----------------------------  214 (293)
Q Consensus       180 ~~~---~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~-------------~~-----------------------------  214 (293)
                      .+|   ..++.++.+|.++++|.++++.+-.+....             .+                             
T Consensus       331 ~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~G  410 (582)
T 1flg_A          331 KDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLG  410 (582)
T ss_dssp             SSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTC
T ss_pred             CCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCcc
Confidence            456   378889999999999999988775443221             00                             


Q ss_pred             ---eeEEEEccCCCEEEEec---------------------------------CCCcEEEEEcCCCCEEEEEecCCCcce
Q 022716          215 ---VRTISFSHTGDYIASAS---------------------------------EDLFIDISNVHTGRTVHQIPCRAAMNS  258 (293)
Q Consensus       215 ---v~~l~~sp~~~~l~s~s---------------------------------~d~~i~iw~~~~~~~~~~~~~~~~i~~  258 (293)
                         ...++|+|+...++...                                 .++.|.-||..+++.+-+.+...++..
T Consensus       411 g~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~  490 (582)
T 1flg_A          411 GKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLWA  490 (582)
T ss_dssp             SSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCCCS
T ss_pred             ccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCCcc
Confidence               01346677655554432                                 368899999999998877665544443


Q ss_pred             eEECCCCCeEEEEEcCCCCCCCCcceE-EEEee
Q 022716          259 VEWNPKYNLLAYAGDDKNKYQADEGVF-RIYGF  290 (293)
Q Consensus       259 ~~~sp~~~~la~~~~d~~~~~~~~~~~-~~~~~  290 (293)
                      -.....+.++.+++.|+.++-+|..+. .+|.+
T Consensus       491 g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~  523 (582)
T 1flg_A          491 GVLATAGNLVFTGTGDGYFKAFDAKSGKELWKF  523 (582)
T ss_dssp             CCEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             cceEeCCCEEEEECCCCcEEEEECCCCCEEEEe
Confidence            333334667777887776666554333 34544

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.06  E-value=0.0039  Score=52.86  Aligned_cols=195  Identities=7%  Similarity=-0.041  Sum_probs=110.6

Q ss_pred             EEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeee
Q 022716           23 VHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCS  102 (293)
Q Consensus        23 v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~  102 (293)
                      -+|.+..++ .+|+.+. ...|+..+++...   .. . +.........++|.+....++++-...+.|..+++......
T Consensus        79 ~~C~~~~~~-~~l~~~~-~~~I~~i~~~~~~---~~-~-~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~  151 (386)
T 3v65_B           79 RSCKALGPE-PVLLFAN-RIDIRQVLPHRSE---YT-L-LLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVE  151 (386)
T ss_dssp             SCEEECSSC-CEEEEEC-BSCEEEECTTSCC---CE-E-EECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEE
T ss_pred             CeECCcccc-ceeEeec-CccceeeccCCCc---EE-E-EecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcE
Confidence            345555553 3444443 3567777775421   11 1 12223456788998776667777677889999998765433


Q ss_pred             eeeee-cCceEEEEEcCCCCEE-EEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECC
Q 022716          103 QQAEL-SGENINITYKPDGTHI-AVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDP  180 (293)
Q Consensus       103 ~~~~~-~~~~~~~~~~~~~~~l-~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  180 (293)
                      ..... ...+..+++.+.+..| ++-...+.|.+.++......                    .++...-.....++++|
T Consensus       152 ~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~--------------------~l~~~~l~~P~giavdp  211 (386)
T 3v65_B          152 EVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK--------------------VLLWQSLEKPRAIALHP  211 (386)
T ss_dssp             EEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCE--------------------EEECSSCSCEEEEEEET
T ss_pred             EEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceE--------------------EeecCCCCCCcEEEEEc
Confidence            22221 1244567888755444 44445667777766532211                    11111223456788888


Q ss_pred             CCCEEEEe-cCC-CcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEE-EEecCCCcEEEEEcCCC
Q 022716          181 MGRYFAVG-SAD-SLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYI-ASASEDLFIDISNVHTG  244 (293)
Q Consensus       181 ~~~~l~~g-s~d-~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l-~s~s~d~~i~iw~~~~~  244 (293)
                      .+..|... ... +.|..+++............-...+.|+++|++..| ++-+..+.|..++....
T Consensus       212 ~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~  278 (386)
T 3v65_B          212 MEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS  278 (386)
T ss_dssp             TTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSC
T ss_pred             CCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCC
Confidence            66544443 334 678888876432222222223457899999876655 44456678888887643

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.04  E-value=0.0013  Score=59.03  Aligned_cols=183  Identities=15%  Similarity=0.162  Sum_probs=106.8

Q ss_pred             CeEEEEeCCCCeeeeeeeecC----------ceEEEEEc-CCCC---EEEEEeCCCeEEEEEccccceeeeecccceee-
Q 022716           89 KTVRLWDARSGKCSQQAELSG----------ENINITYK-PDGT---HIAVGNRDDELTILDVRKFKPIHRRKFGYEVN-  153 (293)
Q Consensus        89 ~~i~vwd~~~~~~~~~~~~~~----------~~~~~~~~-~~~~---~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~-  153 (293)
                      +.|.-+|.++++.+-.++...          .++-+... .+|+   .++.++.+|.+.++|.++.+.+....+...++ 
T Consensus       291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~  370 (582)
T 1flg_A          291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITW  370 (582)
T ss_dssp             SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCS
T ss_pred             ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccc
Confidence            579999999998876665421          11112222 5674   67888999999999999888765544432110 


Q ss_pred             --eeE-----------Eec--------CCCEEEEec---CCCCEEEEEECCCCCEEEEe---------------------
Q 022716          154 --EIA-----------WNM--------TGEMFFLTT---GNAGCYCIAIDPMGRYFAVG---------------------  188 (293)
Q Consensus       154 --~v~-----------~~~--------~~~~~~~~~---~~~~~~~~~~~~~~~~l~~g---------------------  188 (293)
                        .+.           +.+        .........   +...-..++++|+...+.+.                     
T Consensus       371 ~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~  450 (582)
T 1flg_A          371 ASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAY  450 (582)
T ss_dssp             EEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCC
T ss_pred             cccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCce
Confidence              000           000        000000000   00000123444443332221                     


Q ss_pred             ------------cCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEecCCCc
Q 022716          189 ------------SADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAM  256 (293)
Q Consensus       189 ------------s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~i  256 (293)
                                  ..+|.|..||+.+++.+=+.... .++..-.....+.+++.|+.|+.++.+|.++|+.+.++.....+
T Consensus       451 ~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~  529 (582)
T 1flg_A          451 LGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGI  529 (582)
T ss_dssp             CCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC
T ss_pred             eccceeecCCCCCCcceEEEEECCCCCEEEEecCC-CCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCc
Confidence                        23688999999998766444322 22222222235677888999999999999999999888766655


Q ss_pred             ce--eEECCCCCe-EEEEE
Q 022716          257 NS--VEWNPKYNL-LAYAG  272 (293)
Q Consensus       257 ~~--~~~sp~~~~-la~~~  272 (293)
                      .+  +.|..+|.+ +++.+
T Consensus       530 ~a~P~~y~~~G~qYv~~~~  548 (582)
T 1flg_A          530 VSPPITWEQDGEQYLGVTV  548 (582)
T ss_dssp             CSCCEEEEETTEEEEEEEE
T ss_pred             ccCceEEEECCEEEEEEEc
Confidence            43  788788864 44443

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.03  E-value=0.0088  Score=55.69  Aligned_cols=240  Identities=10%  Similarity=0.070  Sum_probs=139.0

Q ss_pred             EEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeee
Q 022716           23 VHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCS  102 (293)
Q Consensus        23 v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~  102 (293)
                      |.++...++|...+ |..++-+..|+.....   ........+...|.++...++ +.++ .++.++-+.+||..+++..
T Consensus       175 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~---~~~~~~~~~~~~i~~i~~d~~-g~lw-igt~~~Gl~~~~~~~~~~~  248 (795)
T 4a2l_A          175 IASTLYRQGDQIYI-GTSTDGLYTYSITQKT---FEKVIPILGTKQIQAILQQSP-TRIW-VATEGAGLFLINPKTKEIK  248 (795)
T ss_dssp             CEEEEEEETTEEEE-EESSSCEEEEETTTCC---EEECC----CCCEEEEEEEET-TEEE-EEEBSSCEEEEETTTTEEE
T ss_pred             eEEEEECCCCCEEE-EECCCCEEEEeCCCCe---EEEecCCCCCCeeEEEEEcCC-CCEE-EEECCCCeEEEeCCCCeEE
Confidence            88888887775444 6665557888865321   111101113456777776554 3344 4554545888998776543


Q ss_pred             eeeee--------cCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeec--------ccceeeeeEEecCCCEEEE
Q 022716          103 QQAEL--------SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK--------FGYEVNEIAWNMTGEMFFL  166 (293)
Q Consensus       103 ~~~~~--------~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~--------~~~~~~~v~~~~~~~~~~~  166 (293)
                      .....        ...+.++...++|. +..|+.+ -+.++|..+........        ....+.++..+..+.+.+.
T Consensus       249 ~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWig  326 (795)
T 4a2l_A          249 NYLHSPSNPKSISSNYIRSLAMDSQNR-LWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLG  326 (795)
T ss_dssp             EECCCTTCTTSCSCSBEEEEEECTTSC-EEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEEE
T ss_pred             EeecCCCCccccCCCeEEEEEEcCCCC-EEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEE
Confidence            32111        23356677777776 4455555 57888876543221110        1123555555555444332


Q ss_pred             ec--------------------------CCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeec--------cC
Q 022716          167 TT--------------------------GNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK--------LE  212 (293)
Q Consensus       167 ~~--------------------------~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~--------~~  212 (293)
                      +.                          ....+.++..++++++ ..|+.++-|..||..++....-...        ..
T Consensus       327 t~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~l-WiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~  405 (795)
T 4a2l_A          327 TYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNL-WIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGS  405 (795)
T ss_dssp             ESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCE-EEEESSSCEEEECTTTCCEEEECCC------CCSC
T ss_pred             ECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCE-EEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCC
Confidence            21                          1124778888887775 4577777899999876543221111        13


Q ss_pred             CCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEe-----cCCCcceeEECCCCCeEEEE
Q 022716          213 WPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP-----CRAAMNSVEWNPKYNLLAYA  271 (293)
Q Consensus       213 ~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~-----~~~~i~~~~~sp~~~~la~~  271 (293)
                      ..|.++...++|+.|-.|+.++-+.+++..+++..+...     ....|.++...+++++.+.+
T Consensus       406 ~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt  469 (795)
T 4a2l_A          406 NNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT  469 (795)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE
T ss_pred             ccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe
Confidence            568899888888855566676668999988876433221     12357788888878765554

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.00  E-value=0.01  Score=55.34  Aligned_cols=239  Identities=12%  Similarity=0.078  Sum_probs=144.2

Q ss_pred             cccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEee-----CCcCCeeEEEEcCCCCCEEEEEeCCCeEEEE
Q 022716           20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELR-----GHADSVDQLCWDPKHADLIATASGDKTVRLW   94 (293)
Q Consensus        20 ~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~-----~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vw   94 (293)
                      ...|.++...++|. |..|+.++-|..|+.....   .......     -....|.++...++ +.+. .|+.++-+..|
T Consensus       309 ~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~---~~~~~~~~~~~~l~~~~V~~i~~d~~-g~lW-iGt~~~Gl~~~  382 (795)
T 4a2l_A          309 QRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNR---FKNIRNIPYKNSLSDNVVSCIVEDKD-KNLW-IGTNDGGLNLY  382 (795)
T ss_dssp             SSCEEEEEECTTSC-EEEEESSSCEEEECGGGGS---SEEECCCTTSSSCSCSSEEEEEECTT-SCEE-EEESSSCEEEE
T ss_pred             CCcEEEEEEeCCcC-EEEEECCCCeEEeCCCccc---ceEEcCCCCCCCCCCCeeEEEEECCC-CCEE-EEECCCCeEEE
Confidence            35799999998886 5567777778888764321   1111100     02345888887654 3444 57777788999


Q ss_pred             eCCCCeeeeeee--------e-cCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeec-----ccceeeeeEEecC
Q 022716           95 DARSGKCSQQAE--------L-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-----FGYEVNEIAWNMT  160 (293)
Q Consensus        95 d~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~-----~~~~~~~v~~~~~  160 (293)
                      |..++.......        . ...+.++...++|+.|.+|+.++-+..+|.++.+...-..     ....+..+..+..
T Consensus       383 ~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~  462 (795)
T 4a2l_A          383 NPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGE  462 (795)
T ss_dssp             CTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSS
T ss_pred             cCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCC
Confidence            987765433211        1 2345677777788757778887889999987644222111     1223444444444


Q ss_pred             CCEEEEec-------------------------CCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEee------
Q 022716          161 GEMFFLTT-------------------------GNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT------  209 (293)
Q Consensus       161 ~~~~~~~~-------------------------~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~------  209 (293)
                      +.+++.+.                         ....+.++..++++++.+...  +-|..||..+...  .+.      
T Consensus       463 g~lwigt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~~--~~~~~~~~~  538 (795)
T 4a2l_A          463 GNLWLGTLSALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGLDI--QKASILPVS  538 (795)
T ss_dssp             SCEEEEESSCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEETTEE--EECCCSCSC
T ss_pred             CCEEEEecCceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCCCeE--EEecCCCCC
Confidence            43322111                         113467888888888666544  5588898877654  222      


Q ss_pred             -ccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEec-----CCCcceeEECCCCCeEEEE
Q 022716          210 -KLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPC-----RAAMNSVEWNPKYNLLAYA  271 (293)
Q Consensus       210 -~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~-----~~~i~~~~~sp~~~~la~~  271 (293)
                       -....|.++...++|+..++.. . -+..+|..+++ ...+..     ...|.++...++|++.+++
T Consensus       539 ~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~~~~~-~~~~~~~~gl~~~~i~~i~~d~~g~lWi~t  603 (795)
T 4a2l_A          539 NVTKLFTNCIYEASNGIIWVGTR-E-GFYCFNEKDKQ-IKRYNTTNGLPNNVVYGILEDSFGRLWLST  603 (795)
T ss_dssp             GGGGSCEEEEEECTTSCEEEEES-S-CEEEEETTTTE-EEEECGGGTCSCSCEEEEEECTTSCEEEEE
T ss_pred             CCCCCeeEEEEECCCCCEEEEeC-C-CceeECCCCCc-EEEeCCCCCCchhheEEEEECCCCCEEEEc
Confidence             1234688999889998655443 3 47788876654 333321     2346778888888776666

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.94  E-value=0.0033  Score=56.51  Aligned_cols=182  Identities=14%  Similarity=0.137  Sum_probs=104.1

Q ss_pred             CeEEEEeCCCCeeeeeeeecCc----------eEEEEEc-CCC---CEEEEEeCCCeEEEEEccccceeeeeccccee--
Q 022716           89 KTVRLWDARSGKCSQQAELSGE----------NINITYK-PDG---THIAVGNRDDELTILDVRKFKPIHRRKFGYEV--  152 (293)
Q Consensus        89 ~~i~vwd~~~~~~~~~~~~~~~----------~~~~~~~-~~~---~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~--  152 (293)
                      ..|.-+|.++++.+-.++...+          ++-+... .+|   +.++.++.+|.+.++|.++.+++....+...+  
T Consensus       278 ~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~  357 (599)
T 1w6s_A          278 MTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNV  357 (599)
T ss_dssp             SEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCS
T ss_pred             ceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCccc
Confidence            3788999999988766654321          1222232 567   46777889999999999888776554322100  


Q ss_pred             --------------------------------------eeeEEecCCCEEEEecCCCCEEEEEECC----CCCE------
Q 022716          153 --------------------------------------NEIAWNMTGEMFFLTTGNAGCYCIAIDP----MGRY------  184 (293)
Q Consensus       153 --------------------------------------~~v~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~------  184 (293)
                                                            ..++++|...++++...+. +......+    .+..      
T Consensus       358 ~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~-~~~~~~~~~~~~~g~~~~g~~~  436 (599)
T 1w6s_A          358 FKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHI-CMDWEPFMLPYKAGQFFVGATL  436 (599)
T ss_dssp             EEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECE-EEEEEECCCCCCTTSCCCCEEE
T ss_pred             ccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEecccc-ceeeecccccccCCcceecccc
Confidence                                                  1123333333333322110 00000000    0110      


Q ss_pred             -EEE--ec------CCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEecCCC
Q 022716          185 -FAV--GS------ADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAA  255 (293)
Q Consensus       185 -l~~--gs------~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~  255 (293)
                       +..  .+      .+|.|..||+.+++.+=+... ..+...-.....+..++.++.|+.++.+|.++|+.+.++.....
T Consensus       437 ~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~-~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g  515 (599)
T 1w6s_A          437 NMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKME-RFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSG  515 (599)
T ss_dssp             EEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred             eeccCCcCCcccCCCcCeEEEEECCCCCEEeEecC-CCCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCC
Confidence             011  01      457899999999876644431 22222212234577788899999999999999999987765544


Q ss_pred             c--ceeEECCCCCe-EEEEE
Q 022716          256 M--NSVEWNPKYNL-LAYAG  272 (293)
Q Consensus       256 i--~~~~~sp~~~~-la~~~  272 (293)
                      +  .-+.|..+|.+ +++.+
T Consensus       516 ~~~~P~~y~~~G~qyv~~~~  535 (599)
T 1w6s_A          516 AIGYPMTYTHKGTQYVAIYY  535 (599)
T ss_dssp             CCSCCEEEEETTEEEEEEEE
T ss_pred             cEeccEEEEeCCEEEEEEEc
Confidence            3  34677778864 44444

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.94  E-value=0.0054  Score=50.06  Aligned_cols=190  Identities=11%  Similarity=0.088  Sum_probs=110.0

Q ss_pred             CeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCC--eEEEEEccccceeee
Q 022716           68 SVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDD--ELTILDVRKFKPIHR  145 (293)
Q Consensus        68 ~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~--~i~l~d~~~~~~~~~  145 (293)
                      ....++|.+++ .++++-..++.|..||.... ..........+..+++.++|+.+++.....  .+..+|..+.+....
T Consensus        33 ~pegia~~~~g-~lyv~d~~~~~I~~~d~~g~-~~~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~  110 (306)
T 2p4o_A           33 FLENLASAPDG-TIFVTNHEVGEIVSITPDGN-QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETL  110 (306)
T ss_dssp             CEEEEEECTTS-CEEEEETTTTEEEEECTTCC-EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred             CcceEEECCCC-CEEEEeCCCCeEEEECCCCc-eEEEEeCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEE
Confidence            45678888864 57777667899999997653 334445556778899999999666554332  466666554432111


Q ss_pred             ecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCE-EEEEee---------ccCCCe
Q 022716          146 RKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEML-CVRTFT---------KLEWPV  215 (293)
Q Consensus       146 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~-~~~~~~---------~~~~~v  215 (293)
                      ...          +.         ......++..+.+..+++-..++.|..+|...+. .+....         ..-...
T Consensus       111 ~~~----------~~---------~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~p  171 (306)
T 2p4o_A          111 LTL----------PD---------AIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAA  171 (306)
T ss_dssp             EEC----------TT---------CSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSE
T ss_pred             EeC----------CC---------ccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcC
Confidence            100          00         0011223334555555555568889999987642 121111         011234


Q ss_pred             eEEEEccCCCEE-EEecCCCcEEEEEcCC-CCE--EEEEecCCCcceeEECCCCCeEEEEEcCCCCCCC
Q 022716          216 RTISFSHTGDYI-ASASEDLFIDISNVHT-GRT--VHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQA  280 (293)
Q Consensus       216 ~~l~~sp~~~~l-~s~s~d~~i~iw~~~~-~~~--~~~~~~~~~i~~~~~sp~~~~la~~~~d~~~~~~  280 (293)
                      +.+  +|++++| ++-...+.|..++... ++.  ...+........+++.++|+++++......+...
T Consensus       172 ngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va~~~~~~V~~~  238 (306)
T 2p4o_A          172 NGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRI  238 (306)
T ss_dssp             EEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEE
T ss_pred             CCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEEeCCCCeEEEE
Confidence            556  8888766 5556678899999864 331  1222222346778999999876665544444443

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.93  E-value=0.0019  Score=52.97  Aligned_cols=174  Identities=11%  Similarity=0.122  Sum_probs=103.5

Q ss_pred             eeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeeeecC---------ceEEEEE---cCCCCEEEEEe--
Q 022716           62 LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSG---------ENINITY---KPDGTHIAVGN--  127 (293)
Q Consensus        62 ~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~---------~~~~~~~---~~~~~~l~~~~--  127 (293)
                      +.+..-.--+..|++..+.++++.-..++|..||...+..... ...+         .+..+.+   .|+++.+++..  
T Consensus         8 ~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~   86 (334)
T 2p9w_A            8 VKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNA   86 (334)
T ss_dssp             ECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEET
T ss_pred             ecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEccc
Confidence            3333333446688876666666666899999999875543322 2222         2457889   68877777544  


Q ss_pred             -----------CCCeEEEEEcc---ccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCC-C
Q 022716          128 -----------RDDELTILDVR---KFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSAD-S  192 (293)
Q Consensus       128 -----------~d~~i~l~d~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d-~  192 (293)
                                 .+..+..+|+.   +.+.+....+......++ ...+.      ....+..++++++|+..++++.- +
T Consensus        87 ~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~-~~~g~------~~~~~nDvavD~~GnaYVt~s~~~~  159 (334)
T 2p9w_A           87 KSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFE-KKAGK------RPFGVVQSAQDRDGNSYVAFALGMP  159 (334)
T ss_dssp             TTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHH-HHHSS------CCEEEEEEEECTTSCEEEEEEESSC
T ss_pred             ccccccccccCCCCEEEEEcCCcCCCCCEEEEecCcccccccc-ccccc------cccCCceeEECCCCCEEEeCCCCCC
Confidence                       25778889988   554433222110000000 00000      01124567888888888888777 7


Q ss_pred             cEEEEeCCCCEEEEEee------ccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCC
Q 022716          193 LVSLWDISEMLCVRTFT------KLEWPVRTISFSHTGDYIASASEDLFIDISNVHTG  244 (293)
Q Consensus       193 ~i~iwd~~~~~~~~~~~------~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~  244 (293)
                      .|...+.... .+..+.      ......+.|+++|+|..|+.....+.+..+|+.+.
T Consensus       160 ~I~rV~pdG~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p  216 (334)
T 2p9w_A          160 AIARVSADGK-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP  216 (334)
T ss_dssp             EEEEECTTSC-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred             eEEEEeCCCC-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence            7776665433 122211      11223678999999988877766999999998754

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.92  E-value=0.0064  Score=50.22  Aligned_cols=222  Identities=11%  Similarity=0.080  Sum_probs=115.4

Q ss_pred             cccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCC
Q 022716           20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG   99 (293)
Q Consensus        20 ~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~   99 (293)
                      ...+.++.|.+++..++ ++.+|.|.. ..+....-.............+.++.+.+  ...+ .++.++.|.. ..+.+
T Consensus        35 ~~~~~~v~~~~~~~~~~-~G~~g~i~~-s~DgG~tW~~~~~~~~~~~~~~~~i~~~~--~~~~-~~g~~g~i~~-S~DgG  108 (327)
T 2xbg_A           35 TATILDMSFIDRHHGWL-VGVNATLME-TRDGGQTWEPRTLVLDHSDYRFNSVSFQG--NEGW-IVGEPPIMLH-TTDGG  108 (327)
T ss_dssp             SSCEEEEEESSSSCEEE-EETTTEEEE-ESSTTSSCEECCCCCSCCCCEEEEEEEET--TEEE-EEEETTEEEE-ESSTT
T ss_pred             CCcEEEEEECCCCcEEE-EcCCCeEEE-eCCCCCCCeECCCCCCCCCccEEEEEecC--CeEE-EEECCCeEEE-ECCCC
Confidence            45799999988787777 455776532 22211110111000111234577888865  2344 4556665544 23333


Q ss_pred             eeeeeee----ecCceEEEEEcCCCCEEEEEeCCCeEEE-EEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEE
Q 022716          100 KCSQQAE----LSGENINITYKPDGTHIAVGNRDDELTI-LDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCY  174 (293)
Q Consensus       100 ~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~d~~i~l-~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  174 (293)
                      +.-....    ..+....+.+.+++..++++ .++.+.. .|  ........                   .......+.
T Consensus       109 ~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~S~D--gG~tW~~~-------------------~~~~~~~~~  166 (327)
T 2xbg_A          109 QSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYRTKD--SGKNWQAL-------------------VQEAIGVMR  166 (327)
T ss_dssp             SSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEEESS--TTSSEEEE-------------------ECSCCCCEE
T ss_pred             CCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEEEcC--CCCCCEEe-------------------ecCCCcceE
Confidence            3211111    12345566666666555544 4454321 12  11111100                   011123466


Q ss_pred             EEEECCCCCEEEEecCCCcEEEEeC--CCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEe-
Q 022716          175 CIAIDPMGRYFAVGSADSLVSLWDI--SEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP-  251 (293)
Q Consensus       175 ~~~~~~~~~~l~~gs~d~~i~iwd~--~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~-  251 (293)
                      .+++.|++.+++++...+..+-.|-  .+...+.  ......+..+.+.|+++.++. +.++.+++++...++.-..+. 
T Consensus       167 ~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~~-~~~G~~~~s~~D~G~tW~~~~~  243 (327)
T 2xbg_A          167 NLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWMI-VNGGKIAFSDPDNSENWGELLS  243 (327)
T ss_dssp             EEEECTTSCEEEEETTSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEEE-ETTTEEEEEETTEEEEECCCBC
T ss_pred             EEEEcCCCcEEEEECCCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEEEE-eCCceEEEecCCCCCeeEeccC
Confidence            7888898888877765444444453  4455442  234567889999999876644 457777776422233222221 


Q ss_pred             ----cCCCcceeEECCCCCeEEEEE
Q 022716          252 ----CRAAMNSVEWNPKYNLLAYAG  272 (293)
Q Consensus       252 ----~~~~i~~~~~sp~~~~la~~~  272 (293)
                          ....+.++.+.|++.+++.+.
T Consensus       244 ~~~~~~~~~~~v~~~~~~~~~~~g~  268 (327)
T 2xbg_A          244 PLRRNSVGFLDLAYRTPNEVWLAGG  268 (327)
T ss_dssp             TTSSCCSCEEEEEESSSSCEEEEES
T ss_pred             CcccCCcceEEEEecCCCEEEEEeC
Confidence                123477889998887777664

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.91  E-value=0.0087  Score=51.57  Aligned_cols=199  Identities=10%  Similarity=0.074  Sum_probs=110.5

Q ss_pred             cEEEEEECCC--CCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCC---Ce-EEEEe
Q 022716           22 KVHSVAWNCT--GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD---KT-VRLWD   95 (293)
Q Consensus        22 ~v~~l~~s~~--~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d---~~-i~vwd   95 (293)
                      ....++|+|+  +..|..+...+.|+.++....   ...  .+.........+++.+++. ++++....   .. +...+
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g---~v~--~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~  213 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQ---YVD--IKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFT  213 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTT---EEE--EECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEEC
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCC---EEE--EeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEE
Confidence            4678999985  445555554488888887532   222  2223344578899998765 66554322   12 22223


Q ss_pred             CCCCee-eeeeeecCceEEEEEcC-CCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCE
Q 022716           96 ARSGKC-SQQAELSGENINITYKP-DGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGC  173 (293)
Q Consensus        96 ~~~~~~-~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  173 (293)
                      ...+.. .........+..+++.| +|..+++-..++.|..+|..+.......                  .........
T Consensus       214 ~~~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~------------------~~~~~~~~~  275 (433)
T 4hw6_A          214 RASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEE------------------VMMDTKGSN  275 (433)
T ss_dssp             GGGTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEE------------------EECSCCSSC
T ss_pred             CCCCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEE------------------eccCCCCCc
Confidence            221111 01112233455688888 6665556556778888887643321110                  000011122


Q ss_pred             EEEEECCCCC-EEEEecCCCcEEEEeCC--CCEE--EEEeecc---------------CCCeeEEEE---------ccCC
Q 022716          174 YCIAIDPMGR-YFAVGSADSLVSLWDIS--EMLC--VRTFTKL---------------EWPVRTISF---------SHTG  224 (293)
Q Consensus       174 ~~~~~~~~~~-~l~~gs~d~~i~iwd~~--~~~~--~~~~~~~---------------~~~v~~l~~---------sp~~  224 (293)
                      ..++++|+++ ++++-...+.|..+++.  ++..  ...+.+.               -.....+++         .++|
T Consensus       276 ~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g  355 (433)
T 4hw6_A          276 FHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEY  355 (433)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCE
T ss_pred             ccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCC
Confidence            3588899998 45555667788887764  2210  1112111               123667888         6777


Q ss_pred             CEEEEecCCCcEEEEEcCCCC
Q 022716          225 DYIASASEDLFIDISNVHTGR  245 (293)
Q Consensus       225 ~~l~s~s~d~~i~iw~~~~~~  245 (293)
                      .+.++-.....|+.++. +|.
T Consensus       356 ~lyvaD~~n~~I~~~~~-~G~  375 (433)
T 4hw6_A          356 DFYFCDRDSHTVRVLTP-EGR  375 (433)
T ss_dssp             EEEEEETTTTEEEEECT-TSE
T ss_pred             cEEEEECCCCEEEEECC-CCC
Confidence            77777777788888874 553

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.85  E-value=0.0023  Score=55.11  Aligned_cols=153  Identities=18%  Similarity=0.175  Sum_probs=93.3

Q ss_pred             eeEEEEcC-CCCCEEEEEeCCCeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeC-CC----eEEEEEccccce
Q 022716           69 VDQLCWDP-KHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNR-DD----ELTILDVRKFKP  142 (293)
Q Consensus        69 i~~~~~~~-~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~----~i~l~d~~~~~~  142 (293)
                      ...++++| .+.. |+.+...+.|+.+|+..+...........+..++++++|+.|++... .+    .+..++... ..
T Consensus       139 P~~lavdp~~~g~-Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g-~~  216 (430)
T 3tc9_A          139 AVWLSFDPKNHNH-LYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRES-GF  216 (430)
T ss_dssp             CCEEEEETTEEEE-EEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGG-TS
T ss_pred             CCEEEECCCCCCe-EEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCC-ce
Confidence            45778887 3333 44444447888999887665444444456788999999996666554 22    233333221 11


Q ss_pred             eeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECC-CCCEEEEecCCCcEEEEeCCCCEEEEEeec-cCCCeeEEEE
Q 022716          143 IHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDP-MGRYFAVGSADSLVSLWDISEMLCVRTFTK-LEWPVRTISF  220 (293)
Q Consensus       143 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~-~~~~v~~l~~  220 (293)
                      ...       ..           +. .-.....++++| ++.++++-..++.|..++............ .......++|
T Consensus       217 ~~~-------~~-----------l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~  277 (430)
T 3tc9_A          217 KVI-------TE-----------LT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQF  277 (430)
T ss_dssp             CSE-------EE-----------EE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEE
T ss_pred             eee-------ee-----------ec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEE
Confidence            100       00           00 012234678899 777777777788999999987654222221 2235788999


Q ss_pred             ccCCCEE-EEecCCCcEEEEEcC
Q 022716          221 SHTGDYI-ASASEDLFIDISNVH  242 (293)
Q Consensus       221 sp~~~~l-~s~s~d~~i~iw~~~  242 (293)
                      +|+|++| ++-.....|..++..
T Consensus       278 ~pdG~~lyv~d~~~~~I~~~~~d  300 (430)
T 3tc9_A          278 HPSGNYAYIVVVNQHYILRSDYD  300 (430)
T ss_dssp             CTTSSEEEEEETTTTEEEEEEEE
T ss_pred             cCCCCEEEEEECCCCEEEEEeCC
Confidence            9999955 555567788887754

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.83  E-value=0.02  Score=53.22  Aligned_cols=210  Identities=13%  Similarity=0.002  Sum_probs=117.7

Q ss_pred             cccEEEEEECCCCCeE-EEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCC
Q 022716           20 KKKVHSVAWNCTGTKL-ASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS   98 (293)
Q Consensus        20 ~~~v~~l~~s~~~~~l-~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~   98 (293)
                      ...+..++|++.+..| ++-...+.|+.++++...........+.........+++.+.+..++++-...+.|.+.+++.
T Consensus       423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG  502 (791)
T 3m0c_C          423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  502 (791)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCC
Confidence            3567889999865555 455556788888876321100111122223344567777766666777777789999999875


Q ss_pred             Ceeeeeee-ecCceEEEEEcCCCCEEEEEeC-C-CeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEE
Q 022716           99 GKCSQQAE-LSGENINITYKPDGTHIAVGNR-D-DELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYC  175 (293)
Q Consensus        99 ~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~-d-~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  175 (293)
                      ........ .-..+..+++.|.+..|+.... . +.|...++.......                    ++...-.....
T Consensus       503 ~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~--------------------lv~~~l~~P~G  562 (791)
T 3m0c_C          503 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS--------------------LVTENIQWPNG  562 (791)
T ss_dssp             SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE--------------------EECSSCSCEEE
T ss_pred             CeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEE--------------------EEeCCCCCceE
Confidence            54333222 2235778999987655555442 2 567777765432211                    11112234567


Q ss_pred             EEECCCCCEE-EEecCCCcEEEEeCCCCEEEEEeecc--CCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEE
Q 022716          176 IAIDPMGRYF-AVGSADSLVSLWDISEMLCVRTFTKL--EWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQI  250 (293)
Q Consensus       176 ~~~~~~~~~l-~~gs~d~~i~iwd~~~~~~~~~~~~~--~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~  250 (293)
                      |++++.+..| ++=...+.|..+++........+...  -....+|++.. +.+.++-...+.|...+..+|+.+..+
T Consensus       563 LavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~I~~~dk~tG~~~~~l  639 (791)
T 3m0c_C          563 ITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTGSDVNLL  639 (791)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred             EEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCCEEEEEeCCCCcceEEe
Confidence            8888665544 44445667888888644332222221  12345666632 344455566677888887777554443

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.83  E-value=0.0091  Score=49.15  Aligned_cols=206  Identities=8%  Similarity=-0.033  Sum_probs=118.9

Q ss_pred             ccEEEEEECCCCCeE-EEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCC
Q 022716           21 KKVHSVAWNCTGTKL-ASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG   99 (293)
Q Consensus        21 ~~v~~l~~s~~~~~l-~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~   99 (293)
                      ..+..++|++.+..| ++-...+.|..++++......  .. ..........+++.+.++.++++-...+.|.+.+++..
T Consensus        35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~--~~-~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~  111 (318)
T 3sov_A           35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQ--NV-VVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGS  111 (318)
T ss_dssp             EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCC--EE-EEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceE--EE-EcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCC
Confidence            356788999865555 555567888888876432111  11 11112334567777655667777677889999998654


Q ss_pred             eeeeee-eecCceEEEEEcCCCCEEEEEeC--CCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEE
Q 022716          100 KCSQQA-ELSGENINITYKPDGTHIAVGNR--DDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCI  176 (293)
Q Consensus       100 ~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~--d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  176 (293)
                      ...... ..-..+..+++.|.+..|.....  .+.|...++.......                    ++...-.....+
T Consensus       112 ~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~--------------------~~~~~l~~Pngl  171 (318)
T 3sov_A          112 LRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFI--------------------IINSEIYWPNGL  171 (318)
T ss_dssp             SCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEE--------------------EECSSCSCEEEE
T ss_pred             cEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEE--------------------EEECCCCCccEE
Confidence            322222 22345678899887655555542  4677777765322111                    111112234567


Q ss_pred             EECCCCCE-EEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEE
Q 022716          177 AIDPMGRY-FAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQI  250 (293)
Q Consensus       177 ~~~~~~~~-l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~  250 (293)
                      +++|++.. +++=+..+.|..+|+..........+.......+++. .+..+.+-...+.|...+..+|+....+
T Consensus       172 avd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~-~~~lywtd~~~~~V~~~~~~~G~~~~~i  245 (318)
T 3sov_A          172 TLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF-EDILYWTDWSTHSILACNKYTGEGLREI  245 (318)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred             EEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEe-CCEEEEEecCCCeEEEEECCCCCceEEE
Confidence            88875544 4444556788888886432221222233456777775 3445556667788988988777654443

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.76  E-value=0.026  Score=52.41  Aligned_cols=241  Identities=12%  Similarity=0.110  Sum_probs=138.5

Q ss_pred             cccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEe--------eCCcCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716           20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIEL--------RGHADSVDQLCWDPKHADLIATASGDKTV   91 (293)
Q Consensus        20 ~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~--------~~h~~~i~~~~~~~~~~~~l~s~~~d~~i   91 (293)
                      ...|.++...++|. |..|..++-|..++.....   ......        .-....|.++...++ +.+ ..|+.++-+
T Consensus       312 ~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~v~~i~~d~~-g~l-Wigt~~~Gl  385 (781)
T 3v9f_A          312 NASARYIFQDSFNN-IWIGTWGGGINFISNAPPT---FHTWSYSPTQMNESSLSNKVVSSVCDDGQ-GKL-WIGTDGGGI  385 (781)
T ss_dssp             SSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCS---CEEEC----CCCSSCCSSSCEEEEEECTT-SCE-EEEEBSSCE
T ss_pred             CCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCc---ceeeccCccccccCCCCCcceEEEEEcCC-CCE-EEEeCCCcE
Confidence            45799999998885 6667777778888765321   111110        002345888887654 344 456666668


Q ss_pred             EEEeCCCCeeeeee---e-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeec---ccceeeeeEEecCCCEE
Q 022716           92 RLWDARSGKCSQQA---E-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK---FGYEVNEIAWNMTGEMF  164 (293)
Q Consensus        92 ~vwd~~~~~~~~~~---~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~---~~~~~~~v~~~~~~~~~  164 (293)
                      ..+|..++......   . ....+.++...++|. |.+|+.++.+..+|.++.+......   ....+..+.-+..+.+.
T Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lw  464 (781)
T 3v9f_A          386 NVFENGKRVAIYNKENRELLSNSVLCSLKDSEGN-LWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIW  464 (781)
T ss_dssp             EEEETTEEEEECC-----CCCSBEEEEEECTTSC-EEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEE
T ss_pred             EEEECCCCeEEEccCCCCCCCcceEEEEECCCCC-EEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEE
Confidence            88887654432211   1 123455666666665 5557776778888875543221110   11234444333333222


Q ss_pred             EEe------------------c-C-----CCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeec----cCCCee
Q 022716          165 FLT------------------T-G-----NAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK----LEWPVR  216 (293)
Q Consensus       165 ~~~------------------~-~-----~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~----~~~~v~  216 (293)
                      +.+                  . .     ...+.++..++++++.+ |+..+-|..||.++... ..+..    ....|.
T Consensus       465 igt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~-~~~~~~~~l~~~~i~  542 (781)
T 3v9f_A          465 IGTHAGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWI-GTFGGGVGIYTPDMQLV-RKFNQYEGFCSNTIN  542 (781)
T ss_dssp             EEETTEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEE-EESSSCEEEECTTCCEE-EEECTTTTCSCSCEE
T ss_pred             EEECCceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEE-EEcCCCEEEEeCCCCeE-EEccCCCCCCCCeeE
Confidence            211                  0 1     23577888888887655 44444478898876643 33321    124688


Q ss_pred             EEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEec-----CCCcceeEECCCCCeEEEE
Q 022716          217 TISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPC-----RAAMNSVEWNPKYNLLAYA  271 (293)
Q Consensus       217 ~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~-----~~~i~~~~~sp~~~~la~~  271 (293)
                      ++...++|...++.. +|.+..+|..+++.. .+..     ...|.++...++|++.+++
T Consensus       543 ~i~~d~~g~lWi~T~-~Glv~~~d~~~~~~~-~~~~~~gl~~~~i~~i~~d~~g~lW~~t  600 (781)
T 3v9f_A          543 QIYRSSKGQMWLATG-EGLVCFPSARNFDYQ-VFQRKEGLPNTHIRAISEDKNGNIWAST  600 (781)
T ss_dssp             EEEECTTSCEEEEET-TEEEEESCTTTCCCE-EECGGGTCSCCCCCEEEECSSSCEEEEC
T ss_pred             EEEECCCCCEEEEEC-CCceEEECCCCCcEE-EccccCCCCCceEEEEEECCCCCEEEEc
Confidence            998888888665544 776688888776532 3321     2346778888888766654

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.74  E-value=0.016  Score=49.35  Aligned_cols=210  Identities=12%  Similarity=-0.005  Sum_probs=120.4

Q ss_pred             cccEEEEEECCCCCeEE-EEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCC
Q 022716           20 KKKVHSVAWNCTGTKLA-SGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS   98 (293)
Q Consensus        20 ~~~v~~l~~s~~~~~l~-s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~   98 (293)
                      ...+..++|++.+..|. +-...+.|+.++++.....................+++.+.++.++++-...+.|.+.+++.
T Consensus       111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g  190 (400)
T 3p5b_L          111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  190 (400)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTT
T ss_pred             cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCC
Confidence            45788999998766665 44456888888875311000011112222344567777765566777777788999999876


Q ss_pred             Ceeeeeee-ecCceEEEEEcCCCCEEEEEeC--CCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEE
Q 022716           99 GKCSQQAE-LSGENINITYKPDGTHIAVGNR--DDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYC  175 (293)
Q Consensus        99 ~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~--d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  175 (293)
                      ........ .-..+..+++.|.+..|.....  .+.|...++.......                    ++...-.....
T Consensus       191 ~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~--------------------~~~~~l~~P~g  250 (400)
T 3p5b_L          191 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS--------------------LVTENIQWPNG  250 (400)
T ss_dssp             CSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEE--------------------EECSSCSCEEE
T ss_pred             CceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEE--------------------EEECCCCceEE
Confidence            54333332 2234778999986665555442  3567777765422111                    11112234567


Q ss_pred             EEECCCCCEEEEe-cCCCcEEEEeCCCCEEEEEeec--cCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEE
Q 022716          176 IAIDPMGRYFAVG-SADSLVSLWDISEMLCVRTFTK--LEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQI  250 (293)
Q Consensus       176 ~~~~~~~~~l~~g-s~d~~i~iwd~~~~~~~~~~~~--~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~  250 (293)
                      |+++|++..|..+ +..+.|..+|+...........  .-....++++ ..+..+.+....+.|...+..+|+.+..+
T Consensus       251 lavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v-~~~~lywtd~~~~~V~~~~~~~G~~~~~i  327 (400)
T 3p5b_L          251 ITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV-FEDKVFWTDIINEAIFSANRLTGSDVNLL  327 (400)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEE-ETTEEEEEESSSCSEEEEESSSCCCCEEE
T ss_pred             EEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEE-eCCEEEEecCCCCeEEEEEcCCCCceEEE
Confidence            8888766554444 5567899999864432222222  1234557776 34455566667788888887777655444

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.69  E-value=0.015  Score=47.74  Aligned_cols=209  Identities=13%  Similarity=0.015  Sum_probs=119.9

Q ss_pred             cccEEEEEECCCCCeEE-EEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCC
Q 022716           20 KKKVHSVAWNCTGTKLA-SGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS   98 (293)
Q Consensus        20 ~~~v~~l~~s~~~~~l~-s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~   98 (293)
                      -..+..++|++++..|. +-..++.|..++++...........+.........+++.+.++.++++-...+.|.+.+...
T Consensus        29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g  108 (316)
T 1ijq_A           29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  108 (316)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC
Confidence            34678999998766554 55556889888876411001111112222234467777765556666667788999999875


Q ss_pred             Ceeeeeee-ecCceEEEEEcCCCCEEEEEeCC--CeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEE
Q 022716           99 GKCSQQAE-LSGENINITYKPDGTHIAVGNRD--DELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYC  175 (293)
Q Consensus        99 ~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d--~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  175 (293)
                      ........ .-..+..+++.|.+..+......  +.|...++.......                    +....-.....
T Consensus       109 ~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~--------------------~~~~~~~~P~g  168 (316)
T 1ijq_A          109 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS--------------------LVTENIQWPNG  168 (316)
T ss_dssp             SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE--------------------EECSSCSCEEE
T ss_pred             CceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEE--------------------EEECCCCCceE
Confidence            44332222 22456789999866655554432  577777764322110                    01111223456


Q ss_pred             EEECCCCCEE-EEecCCCcEEEEeCCCCEEEEEeec---cCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEE
Q 022716          176 IAIDPMGRYF-AVGSADSLVSLWDISEMLCVRTFTK---LEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQI  250 (293)
Q Consensus       176 ~~~~~~~~~l-~~gs~d~~i~iwd~~~~~~~~~~~~---~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~  250 (293)
                      ++++|++..| ++-+..+.|..+|+.... .+.+..   .......+++. .+...++....+.|...+..+++.+..+
T Consensus       169 la~d~~~~~lY~~D~~~~~I~~~d~dg~~-~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i  245 (316)
T 1ijq_A          169 ITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLL  245 (316)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred             EEEeccCCEEEEEECCCCeEEEEecCCCc-eEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEE
Confidence            7888765544 444556789999986432 222211   12345677774 4566667677788999988777655444

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.64  E-value=0.019  Score=47.53  Aligned_cols=232  Identities=14%  Similarity=0.198  Sum_probs=128.4

Q ss_pred             CCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCC----CC--CE-EEEEeC--CCeEEEEeCC--CC
Q 022716           31 TGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK----HA--DL-IATASG--DKTVRLWDAR--SG   99 (293)
Q Consensus        31 ~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~----~~--~~-l~s~~~--d~~i~vwd~~--~~   99 (293)
                      ...+++....++-+.+||++.+   ...  .+..  +.++.+..-|.    +.  .+ ++|.-.  +.+|++|++.  ++
T Consensus        39 ~~s~ii~t~k~~gL~Vydl~G~---~l~--~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~  111 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSLDGK---MLH--SYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG  111 (355)
T ss_dssp             GGCEEEEEETTTEEEEEETTSC---EEE--EECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTC
T ss_pred             CccEEEEEcCCCCEEEEcCCCc---EEE--EccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCC
Confidence            3456777777889999999531   222  2221  34455544331    11  12 333333  5789999763  43


Q ss_pred             eeeeee-----e--ec-CceEEEEE--cCC-CC-EEEEEeCCCeEEEEEccc-------cceeeeecccceeeeeEEecC
Q 022716          100 KCSQQA-----E--LS-GENINITY--KPD-GT-HIAVGNRDDELTILDVRK-------FKPIHRRKFGYEVNEIAWNMT  160 (293)
Q Consensus       100 ~~~~~~-----~--~~-~~~~~~~~--~~~-~~-~l~~~~~d~~i~l~d~~~-------~~~~~~~~~~~~~~~v~~~~~  160 (293)
                      . +...     .  .. ..+..+++  +|. ++ ++++...++.+..|++..       .+.+++...+.+         
T Consensus       112 ~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq---------  181 (355)
T 3amr_A          112 T-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQ---------  181 (355)
T ss_dssp             C-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSC---------
T ss_pred             c-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCC---------
Confidence            3 2222     1  11 33445555  664 44 688888899999988732       223333333332         


Q ss_pred             CCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCC-----CCEEEEEee--ccCCCeeEEEE--ccCCC-EEEEe
Q 022716          161 GEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDIS-----EMLCVRTFT--KLEWPVRTISF--SHTGD-YIASA  230 (293)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~-----~~~~~~~~~--~~~~~v~~l~~--sp~~~-~l~s~  230 (293)
                                  +-.+.+++....|..+-++..|..++.+     +...+..+.  .....+..|++  .++++ ||+.+
T Consensus       182 ------------~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivS  249 (355)
T 3amr_A          182 ------------TEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMAS  249 (355)
T ss_dssp             ------------EEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEE
T ss_pred             ------------cceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEE
Confidence                        2345556777778888887667667754     344454432  22346888887  56666 66555


Q ss_pred             c-CCCcEEEEEcC-CCCEEEEEecC-C----------C--cceeEECCCC-CeEEEEEcCCCC--CCCCcceEEEEeee
Q 022716          231 S-EDLFIDISNVH-TGRTVHQIPCR-A----------A--MNSVEWNPKY-NLLAYAGDDKNK--YQADEGVFRIYGFE  291 (293)
Q Consensus       231 s-~d~~i~iw~~~-~~~~~~~~~~~-~----------~--i~~~~~sp~~-~~la~~~~d~~~--~~~~~~~~~~~~~~  291 (293)
                      + .+....+|+.. +.+.+..+.-. .          .  +..+.+.+.. +-|..+.++.|.  --.....||++..|
T Consensus       250 sQG~~s~~Vydr~~~~~~vg~f~Ig~~~~idgv~eTDG~~v~~~~lG~~fP~Gl~V~qDg~n~~~~~~~~qnFk~v~w~  328 (355)
T 3amr_A          250 SQGNSSYAIYDRQGKNKYVADFRITDGPETDGTSDTDGIDVLGFGLGPEYPFGIFVAQDGENIDHGQKANQNFKIVPWE  328 (355)
T ss_dssp             EGGGTEEEEEESSTTCCEEEEEEECCCSSSCCCCSCCCEEEECSCCSTTCTTCEEEEEESSCEETTEECCCEEEEEEHH
T ss_pred             cCCCCEEEEEECCCCCcEEEEEEecCCCCceeeeccCcceEEccccCCCCCCcEEEEecCCcccCCCCcCceEEEEEHH
Confidence            5 67789999997 56666555311 1          1  1223333321 245666555542  11234678888765

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.61  E-value=0.016  Score=45.88  Aligned_cols=210  Identities=8%  Similarity=0.084  Sum_probs=118.3

Q ss_pred             eeecCccccEEEEEECCCCCeEEE-EeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEE
Q 022716           14 REYTGHKKKVHSVAWNCTGTKLAS-GSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (293)
Q Consensus        14 ~~~~~h~~~v~~l~~s~~~~~l~s-~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~   92 (293)
                      +.+.|-.+.+..++|+|+++.|.+ ...++.|...|.. .  .....+.+.+. ...-.+++.+++ .++++.-.++.+.
T Consensus        20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g--~v~~~i~l~g~-~D~EGIa~~~~g-~~~vs~E~~~~l~   94 (255)
T 3qqz_A           20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-G--DLIRTIPLDFV-KDLETIEYIGDN-QFVISDERDYAIY   94 (255)
T ss_dssp             EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-C--CEEEEEECSSC-SSEEEEEECSTT-EEEEEETTTTEEE
T ss_pred             eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-C--CEEEEEecCCC-CChHHeEEeCCC-EEEEEECCCCcEE
Confidence            345566678999999998876654 6667777777765 1  22233334332 235566776653 4556555577888


Q ss_pred             EEeCCCCee---eeeeee-------cCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceee-eeEEecCC
Q 022716           93 LWDARSGKC---SQQAEL-------SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVN-EIAWNMTG  161 (293)
Q Consensus        93 vwd~~~~~~---~~~~~~-------~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~-~v~~~~~~  161 (293)
                      ++++.....   ......       ....-.+++.|+++.|.++.+.....+|.++......    ...+. ...+... 
T Consensus        95 ~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~----~l~i~~~~~~~~~-  169 (255)
T 3qqz_A           95 VISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSN----ELHISKDKALQRQ-  169 (255)
T ss_dssp             EEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSS----CCEEEECHHHHHT-
T ss_pred             EEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCC----ceeeecchhhccc-
Confidence            887754432   122221       1123579999998877777765555565554210000    00000 0000000 


Q ss_pred             CEEEEecCCCCEEEEEECCCC-CEEEEecCCCcEEEEeCCCCEEEEEe--e-cc------CCCeeEEEEccCCCEEEEec
Q 022716          162 EMFFLTTGNAGCYCIAIDPMG-RYFAVGSADSLVSLWDISEMLCVRTF--T-KL------EWPVRTISFSHTGDYIASAS  231 (293)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~-~~l~~gs~d~~i~iwd~~~~~~~~~~--~-~~------~~~v~~l~~sp~~~~l~s~s  231 (293)
                            ........++++|.. .+++.....+.|..+|.+.. .+..+  . +.      -.....|+|.|+|+ |...+
T Consensus       170 ------~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvs  241 (255)
T 3qqz_A          170 ------FTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVS  241 (255)
T ss_dssp             ------CCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEE
T ss_pred             ------cccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEc
Confidence                  001234578888864 45666666778888986543 33332  2 11      12578899999997 44447


Q ss_pred             CCCcEEEEEc
Q 022716          232 EDLFIDISNV  241 (293)
Q Consensus       232 ~d~~i~iw~~  241 (293)
                      +-+.++++.-
T Consensus       242 E~n~~y~f~~  251 (255)
T 3qqz_A          242 EPNRFYRFTP  251 (255)
T ss_dssp             TTTEEEEEEC
T ss_pred             CCceEEEEEe
Confidence            7777666654

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.59  E-value=0.0027  Score=57.81  Aligned_cols=162  Identities=12%  Similarity=0.079  Sum_probs=93.4

Q ss_pred             eEEEEEcC-CCCEEEEEeCCC-----------eEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEE
Q 022716          111 NINITYKP-DGTHIAVGNRDD-----------ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAI  178 (293)
Q Consensus       111 ~~~~~~~~-~~~~l~~~~~d~-----------~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  178 (293)
                      ...+++.| +++.++.|+.+.           .+.+||+.+.+-.....                 ........+..+++
T Consensus       188 ~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~-----------------~~~~~~~~~~~~~~  250 (656)
T 1k3i_A          188 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTV-----------------TVTKHDMFCPGISM  250 (656)
T ss_dssp             CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEE-----------------EECSCCCSSCEEEE
T ss_pred             ceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcc-----------------cCCCCCCccccccC
Confidence            34566777 888888887543           46777776544221110                 00111222334667


Q ss_pred             CCCCCEEEEecC-CCcEEEEeCCCCEEEEE--eeccCCCeeEEEEccCCCEEEEec-CC-----CcEEEEEcCCCCEEEE
Q 022716          179 DPMGRYFAVGSA-DSLVSLWDISEMLCVRT--FTKLEWPVRTISFSHTGDYIASAS-ED-----LFIDISNVHTGRTVHQ  249 (293)
Q Consensus       179 ~~~~~~l~~gs~-d~~i~iwd~~~~~~~~~--~~~~~~~v~~l~~sp~~~~l~s~s-~d-----~~i~iw~~~~~~~~~~  249 (293)
                      .+++++++.|+. ++.+.+||..+..-...  +..... -.+++..++|+.++.|+ .+     ..+.+||..+.+-. .
T Consensus       251 ~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~-~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~-~  328 (656)
T 1k3i_A          251 DGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARG-YQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWT-S  328 (656)
T ss_dssp             CTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCS-SCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEE-E
T ss_pred             CCCCCEEEeCCCCCCceEEecCcCCceeECCCCCcccc-ccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcce-e
Confidence            789999999984 56799999877643322  111111 23455668999999998 44     56899999876532 2


Q ss_pred             Ee------cCCCcceeEECCCCCeEEEEEcCCCCCCCC-cceEEEEeee
Q 022716          250 IP------CRAAMNSVEWNPKYNLLAYAGDDKNKYQAD-EGVFRIYGFE  291 (293)
Q Consensus       250 ~~------~~~~i~~~~~sp~~~~la~~~~d~~~~~~~-~~~~~~~~~~  291 (293)
                      ++      ....-....+..++..++.++.++.+.... ...+..|+.+
T Consensus       329 ~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~  377 (656)
T 1k3i_A          329 LPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTS  377 (656)
T ss_dssp             ETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECS
T ss_pred             CCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecC
Confidence            21      111111123446677788888776554322 2455666543

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.59  E-value=0.00097  Score=61.20  Aligned_cols=210  Identities=13%  Similarity=0.011  Sum_probs=112.8

Q ss_pred             ccEEEEEECCCCCeEEEE-eCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCC
Q 022716           21 KKVHSVAWNCTGTKLASG-SVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG   99 (293)
Q Consensus        21 ~~v~~l~~s~~~~~l~s~-~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~   99 (293)
                      ..+..++|++.+..|..+ ...+.|+.+++............+.........+++.+.++.++++-...+.|.+.++...
T Consensus       406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~  485 (699)
T 1n7d_A          406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  485 (699)
T ss_dssp             TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred             cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence            356688998877666554 4467888888763100000000111111223456666555566666566788999998765


Q ss_pred             eeeeeeee-cCceEEEEEcCCCCEEEEEeC-C-CeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEE
Q 022716          100 KCSQQAEL-SGENINITYKPDGTHIAVGNR-D-DELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCI  176 (293)
Q Consensus       100 ~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~-d-~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  176 (293)
                      ........ ...+..+++.|.+..|+.... . +.|..+++........                    +...-.....|
T Consensus       486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l--------------------~~~~l~~PnGl  545 (699)
T 1n7d_A          486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL--------------------VTENIQWPNGI  545 (699)
T ss_dssp             CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEE--------------------SCSSCSSCCCE
T ss_pred             ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEE--------------------EeCCCCCccEE
Confidence            43322221 234567888886555444332 2 5666665543211100                    00011122357


Q ss_pred             EECCCC-CEEEEecCCCcEEEEeCCCCEEEEEeec--cCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEe
Q 022716          177 AIDPMG-RYFAVGSADSLVSLWDISEMLCVRTFTK--LEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP  251 (293)
Q Consensus       177 ~~~~~~-~~l~~gs~d~~i~iwd~~~~~~~~~~~~--~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~  251 (293)
                      +++|++ +++++-+..+.|..+++........+..  .......|++..+ .++++....+.|..++..+++.+..+.
T Consensus       546 avd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~  622 (699)
T 1n7d_A          546 TLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLA  622 (699)
T ss_dssp             EECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred             EEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence            788764 4555556677899998864322222211  1123445565443 455566677889999988887766554

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.58  E-value=0.023  Score=47.04  Aligned_cols=188  Identities=14%  Similarity=0.198  Sum_probs=108.6

Q ss_pred             CEEEEEeCCCeEEEEeCCCCeeeeeeeecCceEEEEEcC----CCCE--EEE--EeC--CCeEEEEEcc-ccceeeeecc
Q 022716           80 DLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKP----DGTH--IAV--GNR--DDELTILDVR-KFKPIHRRKF  148 (293)
Q Consensus        80 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~----~~~~--l~~--~~~--d~~i~l~d~~-~~~~~~~~~~  148 (293)
                      .+++.....+-+.+||+ +++.++.+.. +....+..-|    .|+.  ++.  ...  ++++.++++. ...++.....
T Consensus        41 s~ii~t~k~~gL~Vydl-~G~~l~~~~~-g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~  118 (355)
T 3amr_A           41 SKLITTNKKSGLVVYSL-DGKMLHSYNT-GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTD  118 (355)
T ss_dssp             CEEEEEETTTEEEEEET-TSCEEEEECC-SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSC
T ss_pred             cEEEEEcCCCCEEEEcC-CCcEEEEccC-CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccc
Confidence            46677777889999999 7777766543 4444554443    2332  223  333  5789999773 2122222110


Q ss_pred             c-ceeeeeEEecCCCEEEEecCCCCEEEEEE--CCC-CC-EEEEecCCCcEEEEeCC-------CCEEEEEeeccCCCee
Q 022716          149 G-YEVNEIAWNMTGEMFFLTTGNAGCYCIAI--DPM-GR-YFAVGSADSLVSLWDIS-------EMLCVRTFTKLEWPVR  216 (293)
Q Consensus       149 ~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~-~l~~gs~d~~i~iwd~~-------~~~~~~~~~~~~~~v~  216 (293)
                      . .++              ......++-+++  +|. +. ++.+...+|.+..|++.       +.+.++++.- ...+.
T Consensus       119 ~~~pv--------------~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~E  183 (355)
T 3amr_A          119 PDHPI--------------ATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTE  183 (355)
T ss_dssp             TTSCE--------------ECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEE
T ss_pred             cccCc--------------CCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcc
Confidence            0 000              000022233444  664 43 67888888999999872       2355566643 45788


Q ss_pred             EEEEccCCCEEEEecCCCcEEEEEcC-----CCCEEEEEecC---CCcceeEE--CCCCC-eEEEEEcCCCCCCCCcceE
Q 022716          217 TISFSHTGDYIASASEDLFIDISNVH-----TGRTVHQIPCR---AAMNSVEW--NPKYN-LLAYAGDDKNKYQADEGVF  285 (293)
Q Consensus       217 ~l~~sp~~~~l~s~s~d~~i~iw~~~-----~~~~~~~~~~~---~~i~~~~~--sp~~~-~la~~~~d~~~~~~~~~~~  285 (293)
                      .+...+...+|+.+-+|.-|..++.+     +++.+......   ..+..|+.  .+++. +|.+++...       ..+
T Consensus       184 gcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~-------~s~  256 (355)
T 3amr_A          184 GMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGN-------SSY  256 (355)
T ss_dssp             EEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGG-------TEE
T ss_pred             eEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCC-------CEE
Confidence            99999999999999999667666744     23344444322   34556666  56666 555555332       345


Q ss_pred             EEEeee
Q 022716          286 RIYGFE  291 (293)
Q Consensus       286 ~~~~~~  291 (293)
                      -||+.+
T Consensus       257 ~Vydr~  262 (355)
T 3amr_A          257 AIYDRQ  262 (355)
T ss_dssp             EEEESS
T ss_pred             EEEECC
Confidence            666553

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.58  E-value=0.028  Score=47.85  Aligned_cols=185  Identities=9%  Similarity=-0.032  Sum_probs=107.4

Q ss_pred             eEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCe----eeeeee-ec
Q 022716           34 KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGK----CSQQAE-LS  108 (293)
Q Consensus        34 ~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~----~~~~~~-~~  108 (293)
                      +|+.+. ...|+..+++....   .  .+......+..++|++....++++-...+.|..+++....    ...... .-
T Consensus        85 ~ll~~~-~~~I~~i~l~~~~~---~--~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~  158 (400)
T 3p5b_L           85 YLFFTN-RHEVRKMTLDRSEY---T--SLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI  158 (400)
T ss_dssp             EEEEEE-TTEEEEECTTSCSC---E--EEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSC
T ss_pred             eeEEec-cceeEEEccCCcce---e--EeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCC
Confidence            444443 47788878764321   1  1223345678999988766677666678889988886521    111111 22


Q ss_pred             CceEEEEEcCCC-CEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEE
Q 022716          109 GENINITYKPDG-THIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAV  187 (293)
Q Consensus       109 ~~~~~~~~~~~~-~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  187 (293)
                      ..+..+++.+.+ +..++-...+.|.+.++........                    +...-.....|+++|.+..|..
T Consensus       159 ~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l--------------------~~~~~~~P~~iavdp~~g~ly~  218 (400)
T 3p5b_L          159 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTL--------------------FRENGSKPRAIVVDPVHGFMYW  218 (400)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEE--------------------EECSSCCEEEEEEETTTTEEEE
T ss_pred             CCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEE--------------------EeCCCCCcceEEEecccCeEEE
Confidence            345678888744 4444545567888877764332111                    1112233567888886555444


Q ss_pred             ec-C-CCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEe-cCCCcEEEEEcCCC
Q 022716          188 GS-A-DSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASA-SEDLFIDISNVHTG  244 (293)
Q Consensus       188 gs-~-d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~-s~d~~i~iw~~~~~  244 (293)
                      .. . .+.|...++............-...+.|+++|++..|+.+ +....|...+....
T Consensus       219 td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~  278 (400)
T 3p5b_L          219 TDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG  278 (400)
T ss_dssp             EECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             EeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCC
Confidence            43 2 3678888876433222222223567999999887766554 56678999988643

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.48  E-value=0.066  Score=49.73  Aligned_cols=180  Identities=9%  Similarity=0.002  Sum_probs=104.2

Q ss_pred             CCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCe----eeeeee-ecCceEEEE
Q 022716           41 DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGK----CSQQAE-LSGENINIT  115 (293)
Q Consensus        41 dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~----~~~~~~-~~~~~~~~~  115 (293)
                      ...|+..+++....   .  .+......+..+++.+....++++-...+.|+.+++....    ....+. .-..+..++
T Consensus       403 ~~~Ir~i~l~~~~~---~--~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLA  477 (791)
T 3m0c_C          403 RHEVRKMTLDRSEY---T--SLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLA  477 (791)
T ss_dssp             BSSEEEECTTSCCC---E--EEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEE
T ss_pred             ccceeEeeccCCcc---e--eeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceee
Confidence            35677777754221   1  1223345577888987666677776777889888886531    111111 123456788


Q ss_pred             EcCCCCEEE-EEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEec-CC-C
Q 022716          116 YKPDGTHIA-VGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGS-AD-S  192 (293)
Q Consensus       116 ~~~~~~~l~-~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs-~d-~  192 (293)
                      +.+.+..|. +-...++|.+.++.......                    ++...-.....|+++|....|.... .+ +
T Consensus       478 vD~~~~~LY~tD~~~~~I~v~~ldG~~~~~--------------------l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~  537 (791)
T 3m0c_C          478 VDWIHSNIYWTDSVLGTVSVADTKGVKRKT--------------------LFRENGSKPRAIVVDPVHGFMYWTDWGTPA  537 (791)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTSSSEEE--------------------EEECTTCCEEEEEEETTTTEEEEEECSSSC
T ss_pred             eeecCCcEEEEecCCCeEEEEeCCCCeEEE--------------------EEeCCCCCcceEEEecCCCCEEEecCCCCC
Confidence            887765444 44456788888876433211                    1112223456788888755444443 22 6


Q ss_pred             cEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEe-cCCCcEEEEEcCCCC
Q 022716          193 LVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASA-SEDLFIDISNVHTGR  245 (293)
Q Consensus       193 ~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~-s~d~~i~iw~~~~~~  245 (293)
                      .|...++........+...-...+.|++.|.+..|+.+ .....|...++....
T Consensus       538 ~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~  591 (791)
T 3m0c_C          538 KIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN  591 (791)
T ss_dssp             EEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             eEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCc
Confidence            78888886544333333333578999999876666544 456778888875443

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.38  E-value=0.041  Score=45.16  Aligned_cols=180  Identities=8%  Similarity=0.007  Sum_probs=103.7

Q ss_pred             CCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeee-e-eecCceEEEEEcC
Q 022716           41 DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQ-A-ELSGENINITYKP  118 (293)
Q Consensus        41 dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~-~-~~~~~~~~~~~~~  118 (293)
                      ...|+..+++.......  ....+ ......+.|.+..+.++.+-...+.|..++...+..... . ..-..+..+++.+
T Consensus        12 ~~~I~~i~l~~~~~~~~--~~~~~-~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~   88 (318)
T 3sov_A           12 RRDLRLVDATNGKENAT--IVVGG-LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDW   88 (318)
T ss_dssp             EEEEEEEETTCTTSCCE--EEEEE-EEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEET
T ss_pred             cCeEEEEECCCCceEEE--EEecC-CCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEc
Confidence            46788888875421111  11111 234568889886666777777788999999876532111 1 1123456788887


Q ss_pred             CCC-EEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEec--CCCcEE
Q 022716          119 DGT-HIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGS--ADSLVS  195 (293)
Q Consensus       119 ~~~-~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs--~d~~i~  195 (293)
                      .+. .+++-...+.|.++++.......                    +....-.....++++|.+..|....  ..+.|.
T Consensus        89 ~~g~ly~~d~~~~~I~~~~~dG~~~~~--------------------l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~  148 (318)
T 3sov_A           89 LGEKLYWTDSETNRIEVSNLDGSLRKV--------------------LFWQELDQPRAIALDPSSGFMYWTDWGEVPKIE  148 (318)
T ss_dssp             TTTEEEEEETTTTEEEEEETTSCSCEE--------------------EECSSCSSEEEEEEEGGGTEEEEEECSSSCEEE
T ss_pred             CCCeEEEEECCCCEEEEEECCCCcEEE--------------------EEeCCCCCccEEEEeCCCCEEEEEecCCCCEEE
Confidence            544 44454556788888876432111                    1111223445677887655444443  256788


Q ss_pred             EEeCCCCEEEEEeeccCCCeeEEEEccCCCEE-EEecCCCcEEEEEcCC
Q 022716          196 LWDISEMLCVRTFTKLEWPVRTISFSHTGDYI-ASASEDLFIDISNVHT  243 (293)
Q Consensus       196 iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l-~s~s~d~~i~iw~~~~  243 (293)
                      .+++............-...+.|+++|++..| ++-+..+.|..++...
T Consensus       149 r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG  197 (318)
T 3sov_A          149 RAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG  197 (318)
T ss_dssp             EEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             EEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCC
Confidence            88775332211122222457899999976655 4445678899998864

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.33  E-value=0.05  Score=44.81  Aligned_cols=221  Identities=12%  Similarity=0.056  Sum_probs=111.2

Q ss_pred             cccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEE-Eee-CCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCC
Q 022716           20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDI-ELR-GHADSVDQLCWDPKHADLIATASGDKTVRLWDAR   97 (293)
Q Consensus        20 ~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~-~~~-~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~   97 (293)
                      ...+.++.|++ +. +..++.+|.|.. ..+ .  +..... ... .+...+..+.+.+. ..++ .++.++.|.. ..+
T Consensus        79 ~~~~~~i~~~~-~~-~~~~g~~g~i~~-S~D-g--G~tW~~~~~~~~~~~~~~~i~~~~~-~~~~-~~~~~g~v~~-S~D  149 (327)
T 2xbg_A           79 DYRFNSVSFQG-NE-GWIVGEPPIMLH-TTD-G--GQSWSQIPLDPKLPGSPRLIKALGN-GSAE-MITNVGAIYR-TKD  149 (327)
T ss_dssp             CCEEEEEEEET-TE-EEEEEETTEEEE-ESS-T--TSSCEECCCCTTCSSCEEEEEEEET-TEEE-EEETTCCEEE-ESS
T ss_pred             CccEEEEEecC-Ce-EEEEECCCeEEE-ECC-C--CCCceECccccCCCCCeEEEEEECC-CCEE-EEeCCccEEE-EcC
Confidence            34688999976 43 444555665443 222 1  111111 111 12234566665543 3344 4455665432 222


Q ss_pred             CCeeeeeee--ecCceEEEEEcCCCCEEEEEeCCCeEEEEEc--cccceeeeecccceeeeeEEecCCCEEEEecCCCCE
Q 022716           98 SGKCSQQAE--LSGENINITYKPDGTHIAVGNRDDELTILDV--RKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGC  173 (293)
Q Consensus        98 ~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  173 (293)
                      .++.-....  .......+++.|++..++++...+..+-.|-  .+.++..                      ......+
T Consensus       150 gG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~----------------------~~~~~~~  207 (327)
T 2xbg_A          150 SGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHN----------------------RTTSRRL  207 (327)
T ss_dssp             TTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEE----------------------CCSSSCE
T ss_pred             CCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECC----------------------CCCCCcc
Confidence            332212111  2334567888898887776654333333332  1111110                      0112345


Q ss_pred             EEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeec----cCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEE
Q 022716          174 YCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK----LEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQ  249 (293)
Q Consensus       174 ~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~----~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~  249 (293)
                      ..+++.++++.++++ .+|.+.+.+...+..-..+..    ....+.++.+.|+++.++.+. ++.+ ++....|+.-..
T Consensus       208 ~~~~~~~~g~~~~~~-~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~  284 (327)
T 2xbg_A          208 HNMGFTPDGRLWMIV-NGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQ  284 (327)
T ss_dssp             EEEEECTTSCEEEEE-TTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEE
T ss_pred             ceeEECCCCCEEEEe-CCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEE
Confidence            677788888766554 567777764332332222211    123588899998887777655 5666 344444544333


Q ss_pred             Ee----cCCCcceeEECCCCCeEEEEEcCC
Q 022716          250 IP----CRAAMNSVEWNPKYNLLAYAGDDK  275 (293)
Q Consensus       250 ~~----~~~~i~~~~~sp~~~~la~~~~d~  275 (293)
                      +.    ....+.++.|.+++. +..++.++
T Consensus       285 ~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G  313 (327)
T 2xbg_A          285 DVDVKKVPSNFYKILFFSPDQ-GFILGQKG  313 (327)
T ss_dssp             CGGGTTSSSCCCEEEEEETTE-EEEECSTT
T ss_pred             cCccCCCCCCeEEEEEECCCc-eEEEcCCc
Confidence            32    134578899976554 45555554

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.30  E-value=0.051  Score=44.48  Aligned_cols=183  Identities=9%  Similarity=-0.008  Sum_probs=105.1

Q ss_pred             eEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCC----Ceeeeeeee-c
Q 022716           34 KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS----GKCSQQAEL-S  108 (293)
Q Consensus        34 ~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~----~~~~~~~~~-~  108 (293)
                      +|+.+.. ..|+..+++....   ..  +.........+.|.+.+..++++-..++.|..+++..    ......... -
T Consensus         3 ~ll~~~~-~~I~~i~~~~~~~---~~--~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~   76 (316)
T 1ijq_A            3 YLFFTNR-HEVRKMTLDRSEY---TS--LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI   76 (316)
T ss_dssp             EEEEECB-SSEEEEETTSCCC---EE--EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSC
T ss_pred             EEEEECC-CeEEEEECCCcce---Ee--hhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCC
Confidence            3443333 5678888865321   11  1223345678899887666777777789999999875    221111111 1


Q ss_pred             CceEEEEEcCCCCEE-EEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEE
Q 022716          109 GENINITYKPDGTHI-AVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAV  187 (293)
Q Consensus       109 ~~~~~~~~~~~~~~l-~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  187 (293)
                      ..+..+++.+.+..| ++-...+.|.++|+.......                    ++.........++++|.+..|..
T Consensus        77 ~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~--------------------~~~~~~~~P~~iavdp~~g~ly~  136 (316)
T 1ijq_A           77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKT--------------------LFRENGSKPRAIVVDPVHGFMYW  136 (316)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEE--------------------EEECTTCCEEEEEEETTTTEEEE
T ss_pred             CCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEE--------------------EEECCCCCcceEEeCCCCCEEEE
Confidence            345678888755544 444567788888875432111                    11112234567888886554443


Q ss_pred             ecC-C-CcEEEEeCCCCEEEEEe-eccCCCeeEEEEccCCCEEE-EecCCCcEEEEEcCC
Q 022716          188 GSA-D-SLVSLWDISEMLCVRTF-TKLEWPVRTISFSHTGDYIA-SASEDLFIDISNVHT  243 (293)
Q Consensus       188 gs~-d-~~i~iwd~~~~~~~~~~-~~~~~~v~~l~~sp~~~~l~-s~s~d~~i~iw~~~~  243 (293)
                      ... . +.|..+++.... ...+ ...-...+.|+++|++..|. +-+..+.|...+...
T Consensus       137 ~d~~~~~~I~~~~~dG~~-~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg  195 (316)
T 1ijq_A          137 TDWGTPAKIKKGGLNGVD-IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG  195 (316)
T ss_dssp             EECSSSCEEEEEETTSCC-EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             EccCCCCeEEEEcCCCCC-eEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCC
Confidence            333 3 678888875432 2223 22234678999999876664 445667899999864

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.30  E-value=0.069  Score=45.92  Aligned_cols=211  Identities=11%  Similarity=0.114  Sum_probs=110.2

Q ss_pred             ccccEEEEEECCCCCeEEEEeCC---Cc-EEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEE
Q 022716           19 HKKKVHSVAWNCTGTKLASGSVD---QT-ARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLW   94 (293)
Q Consensus        19 h~~~v~~l~~s~~~~~l~s~~~d---g~-v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vw   94 (293)
                      .......++|+++|+.+++....   .. +...+... ......  .+. .-.....++++|.++.++++-..++.|+.+
T Consensus       180 ~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~-~~~~~~--~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~  255 (433)
T 4hw6_A          180 NIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRAS-GFTERL--SLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSY  255 (433)
T ss_dssp             CCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGG-TTCCEE--EEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEE
T ss_pred             CCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCC-Ceeccc--ccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEE
Confidence            34568899999999944443321   11 22222211 111001  111 122345667888556677666678889999


Q ss_pred             eCCCCeeee-eeeec--CceEEEEEcCCCCEEEEEe-CCCeEEEEEccccc-eeeeecccceeeeeEEe--cCCCE--EE
Q 022716           95 DARSGKCSQ-QAELS--GENINITYKPDGTHIAVGN-RDDELTILDVRKFK-PIHRRKFGYEVNEIAWN--MTGEM--FF  165 (293)
Q Consensus        95 d~~~~~~~~-~~~~~--~~~~~~~~~~~~~~l~~~~-~d~~i~l~d~~~~~-~~~~~~~~~~~~~v~~~--~~~~~--~~  165 (293)
                      |..++.... .....  .....++++|+++.|.... ..++|..+++.... .+..      +..+.-.  ..+-.  ..
T Consensus       256 d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~------~~~~ag~~g~~g~~dg~~  329 (433)
T 4hw6_A          256 DPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAV------PYIVCGQHSSPGWVDGMG  329 (433)
T ss_dssp             CTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCC------CEEEEECTTCCCCBCEEG
T ss_pred             ECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCc------EEEEEecCCCCccCCCcc
Confidence            988665522 22221  2234699999998555544 56788888765211 0000      0000000  00000  00


Q ss_pred             EecCCCCEEEEEE---------CCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccC------------------CCeeEE
Q 022716          166 LTTGNAGCYCIAI---------DPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLE------------------WPVRTI  218 (293)
Q Consensus       166 ~~~~~~~~~~~~~---------~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~------------------~~v~~l  218 (293)
                      ....-.....+++         ++++.++++-...+.|+.++. ++. +.++.+..                  .....|
T Consensus       330 ~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~-v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~gi  407 (433)
T 4hw6_A          330 TGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGR-VTTYAGRGNSREWGYVDGELRSQALFNHPTSI  407 (433)
T ss_dssp             GGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSE-EEEEECCCTTCSSCCBCEETTTTCBCSSEEEE
T ss_pred             cceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCC-EEEEEeCCCCCccccCCCccccccEeCCCcEE
Confidence            0000123456788         777888777777888999985 453 33333211                  135678


Q ss_pred             EEc-cCCCEEEEecCCCcEEEEEc
Q 022716          219 SFS-HTGDYIASASEDLFIDISNV  241 (293)
Q Consensus       219 ~~s-p~~~~l~s~s~d~~i~iw~~  241 (293)
                      ++. ++|.+.++-.....|+..+.
T Consensus       408 avd~~~g~lyVaD~~n~rIr~i~~  431 (433)
T 4hw6_A          408 AYDMKRKCFYIGDCDNHRVRKIAP  431 (433)
T ss_dssp             EEETTTTEEEEEEGGGTEEEEEEE
T ss_pred             EEECCCCEEEEEeCCCCEEEEEec
Confidence            887 55655555555566665554

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.28  E-value=0.06  Score=44.93  Aligned_cols=235  Identities=14%  Similarity=0.018  Sum_probs=117.4

Q ss_pred             cccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEee---CCcCCeeEEEEcCC---CCCEEEEEeC---C--
Q 022716           20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELR---GHADSVDQLCWDPK---HADLIATASG---D--   88 (293)
Q Consensus        20 ~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~---~h~~~i~~~~~~~~---~~~~l~s~~~---d--   88 (293)
                      -.....++|.|+|+.+ .+..+|.|++++.+  .  ......+.   .-......++++|+   +..++++-+.   +  
T Consensus        28 l~~P~~ia~~pdG~l~-V~e~~g~I~~~d~~--G--~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~  102 (354)
T 3a9g_A           28 LEVPWSIAPLGGGRYL-VTERPGRLVLISPS--G--KKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGH  102 (354)
T ss_dssp             CSCEEEEEEEETTEEE-EEETTTEEEEECSS--C--EEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGC
T ss_pred             CCCCeEEEEcCCCeEE-EEeCCCEEEEEeCC--C--ceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCC
Confidence            3567899999999754 45666999888632  1  11111111   12345788999986   4455554442   3  


Q ss_pred             --CeEEEEeCCCC--ee---eee---eeec--CceEEEEEcCCCCEEEEEeCC-------------CeEEEEEcccccee
Q 022716           89 --KTVRLWDARSG--KC---SQQ---AELS--GENINITYKPDGTHIAVGNRD-------------DELTILDVRKFKPI  143 (293)
Q Consensus        89 --~~i~vwd~~~~--~~---~~~---~~~~--~~~~~~~~~~~~~~l~~~~~d-------------~~i~l~d~~~~~~~  143 (293)
                        ..|..++....  ..   ...   +...  .....++|.|||...++.+..             +.|.-++....-+.
T Consensus       103 ~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~  182 (354)
T 3a9g_A          103 IRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPA  182 (354)
T ss_dssp             EEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCT
T ss_pred             cceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCC
Confidence              56777776543  11   111   1111  123458999999866664322             23333332211000


Q ss_pred             eeecccceeeeeEEecCCCEEEEecCCCCEEEEEECC-CCCEEEEecCCC---cEEEEeCCC---------------C-E
Q 022716          144 HRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDP-MGRYFAVGSADS---LVSLWDISE---------------M-L  203 (293)
Q Consensus       144 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~gs~d~---~i~iwd~~~---------------~-~  203 (293)
                      .             +|-........+.-...-++++| +++++++-...+   .|.+...-.               . .
T Consensus       183 ~-------------npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~  249 (354)
T 3a9g_A          183 D-------------NPFPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVD  249 (354)
T ss_dssp             T-------------SSSTTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCC
T ss_pred             C-------------CCCCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcC
Confidence            0             00000011111112233566676 455444432221   233322100               0 0


Q ss_pred             EEEEeeccCCCeeEEEEc-------cCCCEEEEecCCCcEEEEEcCCC-CEE--EEEec--CCCcceeEECCCCCeEEEE
Q 022716          204 CVRTFTKLEWPVRTISFS-------HTGDYIASASEDLFIDISNVHTG-RTV--HQIPC--RAAMNSVEWNPKYNLLAYA  271 (293)
Q Consensus       204 ~~~~~~~~~~~v~~l~~s-------p~~~~l~s~s~d~~i~iw~~~~~-~~~--~~~~~--~~~i~~~~~sp~~~~la~~  271 (293)
                      .+..+.........++|.       .+|.++++.-..+.|...++... +..  ..+..  ...+..+++.|+|.++++.
T Consensus       250 p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~  329 (354)
T 3a9g_A          250 PVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILIST  329 (354)
T ss_dssp             CSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEE
T ss_pred             CEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEE
Confidence            111121112356778883       57777777777778888887653 332  22321  3468899999999877776


Q ss_pred             E
Q 022716          272 G  272 (293)
Q Consensus       272 ~  272 (293)
                      .
T Consensus       330 ~  330 (354)
T 3a9g_A          330 S  330 (354)
T ss_dssp             C
T ss_pred             e
Confidence            4

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.26  E-value=0.1  Score=47.10  Aligned_cols=203  Identities=8%  Similarity=-0.043  Sum_probs=113.1

Q ss_pred             ccEEEEEECCCCCeEEEEe-CCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCC
Q 022716           21 KKVHSVAWNCTGTKLASGS-VDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG   99 (293)
Q Consensus        21 ~~v~~l~~s~~~~~l~s~~-~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~   99 (293)
                      ..+..++|++.+..|.-+. ..+.|..++++...  ... ..+..-......+++.+.++.++++-...+.|.+.+++..
T Consensus        40 ~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~--~~~-~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~  116 (619)
T 3s94_A           40 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTE--SVQ-NVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGS  116 (619)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEEC-------CE-EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             CceEEEEEEeCCCEEEEEECCCCeEEEEEccCCC--ceE-EEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCC
Confidence            4578999998777665554 46778888775321  111 1122222456778887766667777777899999998765


Q ss_pred             eeeeee-eecCceEEEEEcCCCCEEEEEeC--CCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEE
Q 022716          100 KCSQQA-ELSGENINITYKPDGTHIAVGNR--DDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCI  176 (293)
Q Consensus       100 ~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~--d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  176 (293)
                      ...... ..-..+..+++.|.+..|.....  .+.|...++.....                    ..++...-.....|
T Consensus       117 ~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~--------------------~~l~~~~~~~P~Gl  176 (619)
T 3s94_A          117 LRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR--------------------FIIINSEIYWPNGL  176 (619)
T ss_dssp             SCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSC--------------------EEEECSSCSSEEEE
T ss_pred             CEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCce--------------------EEEEeCCCCCCcEE
Confidence            432222 12234667888887555544442  24555555433211                    11111222345678


Q ss_pred             EECCCCC-EEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEE
Q 022716          177 AIDPMGR-YFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTV  247 (293)
Q Consensus       177 ~~~~~~~-~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~  247 (293)
                      ++++++. ++++=...+.|..+|+..........+.......|++..+ ....+-...+.|...|..+++..
T Consensus       177 ald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~  247 (619)
T 3s94_A          177 TLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGL  247 (619)
T ss_dssp             EEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCC
T ss_pred             EEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCccc
Confidence            8888644 4455556678988888654332222211122346676655 44455556778888888776543

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.19  E-value=0.046  Score=46.40  Aligned_cols=147  Identities=13%  Similarity=0.148  Sum_probs=86.2

Q ss_pred             CCCeEEEEeCCCCeeeeeeeec-----CceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeee-ecccceeeeeEEecC
Q 022716           87 GDKTVRLWDARSGKCSQQAELS-----GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR-RKFGYEVNEIAWNMT  160 (293)
Q Consensus        87 ~d~~i~vwd~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~-~~~~~~~~~v~~~~~  160 (293)
                      .+..||.-++..+..=+.+...     ..+..+..+|+|++|+..+ +.+|.+..+........ ......++...+...
T Consensus        39 ~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~  117 (452)
T 3pbp_A           39 QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSID  117 (452)
T ss_dssp             ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGG
T ss_pred             ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcC
Confidence            3467777777643311222332     1456789999999998886 56899998873221110 000011111122211


Q ss_pred             CCEEEEecCCCCEEEEEECCC---CCEEEEecCCCcEEEEeCCCC-EEEEEee---------ccCCCeeEEEEccCCCEE
Q 022716          161 GEMFFLTTGNAGCYCIAIDPM---GRYFAVGSADSLVSLWDISEM-LCVRTFT---------KLEWPVRTISFSHTGDYI  227 (293)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~---~~~l~~gs~d~~i~iwd~~~~-~~~~~~~---------~~~~~v~~l~~sp~~~~l  227 (293)
                      ...   .....++..+.|||-   +..|++-..|+.|++||+... .....+.         .....|.+++|.+++-.|
T Consensus       118 ~~~---~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTL  194 (452)
T 3pbp_A          118 EEE---VGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTL  194 (452)
T ss_dssp             GCC-----CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCE
T ss_pred             Ccc---cCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEE
Confidence            110   113567888889986   468999999999999998752 1111221         122578899999987656


Q ss_pred             EE--ecCCCcEE
Q 022716          228 AS--ASEDLFID  237 (293)
Q Consensus       228 ~s--~s~d~~i~  237 (293)
                      ..  ....|.|+
T Consensus       195 Yvl~~t~~GDIY  206 (452)
T 3pbp_A          195 YCLNTTEGGDIF  206 (452)
T ss_dssp             EEEECTTSCEEE
T ss_pred             EEEecCCCCCEE
Confidence            55  55778775

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.08  E-value=0.13  Score=44.88  Aligned_cols=115  Identities=12%  Similarity=0.091  Sum_probs=70.6

Q ss_pred             ccEEEEEE-------CCCCCeEEEEeCCC-c------EEEeecCCC-CCCc-e--eEEEeeCCcCCeeEEEEcCCCCCEE
Q 022716           21 KKVHSVAW-------NCTGTKLASGSVDQ-T------ARVWHIEPH-GHGK-V--KDIELRGHADSVDQLCWDPKHADLI   82 (293)
Q Consensus        21 ~~v~~l~~-------s~~~~~l~s~~~dg-~------v~iw~~~~~-~~~~-~--~~~~~~~h~~~i~~~~~~~~~~~~l   82 (293)
                      .....++|       +++|+.|..+...+ .      |.+.+.... .... .  ..+...   .....++.+|+++.++
T Consensus       186 ~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~---~~p~giavdp~~g~LY  262 (496)
T 3kya_A          186 NRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY---KQCNGATIHPINGELY  262 (496)
T ss_dssp             SBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE---SCCCCEEECTTTCCEE
T ss_pred             CCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccC---CCceEEEEcCCCCeEE
Confidence            35899999       99999777666554 2      445543321 1110 0  111111   1234667888777788


Q ss_pred             EEEeCCCeEEEEeCC-------CCee-----------e-eeeee--cCceEEEEEcCCCCEEEEE-eCCCeEEEEEcc
Q 022716           83 ATASGDKTVRLWDAR-------SGKC-----------S-QQAEL--SGENINITYKPDGTHIAVG-NRDDELTILDVR  138 (293)
Q Consensus        83 ~s~~~d~~i~vwd~~-------~~~~-----------~-~~~~~--~~~~~~~~~~~~~~~l~~~-~~d~~i~l~d~~  138 (293)
                      ++-..++.|..+|+.       ++..           . .....  ...+..++++|+|+.|..+ +..++|+.+|..
T Consensus       263 vtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d  340 (496)
T 3kya_A          263 FNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD  340 (496)
T ss_dssp             EEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             EEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence            888889999999987       4443           1 11222  2346789999999964444 456788886654

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.01  E-value=0.22  Score=46.21  Aligned_cols=239  Identities=9%  Similarity=0.064  Sum_probs=134.2

Q ss_pred             ccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEee------CCcCCeeEEEEcCCCCCEEEEEeCCCeEEEE
Q 022716           21 KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELR------GHADSVDQLCWDPKHADLIATASGDKTVRLW   94 (293)
Q Consensus        21 ~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~------~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vw   94 (293)
                      ..|.++...++|...+ |..+ -+.+||....   ........      -....|.++...+++  .|..|+..+-+.++
T Consensus       211 ~~i~~i~~d~~g~lwi-gt~~-Gl~~~d~~~~---~~~~~~~~~~~~~~l~~~~i~~i~~d~~g--~lWigt~~~Gl~~~  283 (781)
T 3v9f_A          211 NDVRCIYKDTNGNIWI-GTSK-GLALFNANTE---TFTNFHNNPGNIHGALSSYIFSIKQLKDN--KLWIATELNGIMIL  283 (781)
T ss_dssp             SSEEEEEECTTCCEEE-EETT-EEEEEETTTT---EEEC-----------CCCCEEEEEECTTS--EEEEEESSSCEEEE
T ss_pred             CceeEEEEcCCCCEEE-EeCC-cHheECCCCC---cEEEEEcCCCccccccCceEEEEEECCCC--CEEEEeCCCCeEEE
Confidence            4688998888886554 4444 5788886532   11111100      123468888776543  34456664667888


Q ss_pred             eCCCCeeeeeee--------------e-cCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeee---------ec-cc
Q 022716           95 DARSGKCSQQAE--------------L-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR---------RK-FG  149 (293)
Q Consensus        95 d~~~~~~~~~~~--------------~-~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~---------~~-~~  149 (293)
                      |..++.......              . ...+.++...++|. +..|+.++-+..++........-         .. ..
T Consensus       284 ~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~  362 (781)
T 3v9f_A          284 DLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSN  362 (781)
T ss_dssp             ETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSS
T ss_pred             CCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCC
Confidence            887665322111              1 12355677777765 66777777788888654321110         00 11


Q ss_pred             ceeeeeEEecCCCEEEEec-----------------------CCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEE
Q 022716          150 YEVNEIAWNMTGEMFFLTT-----------------------GNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVR  206 (293)
Q Consensus       150 ~~~~~v~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~  206 (293)
                      ..+..+.-+..+.+.+.+.                       ....+.++..++++.+.+ |+.++-|..+|.+++.. .
T Consensus       363 ~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~-~  440 (781)
T 3v9f_A          363 KVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKF-Q  440 (781)
T ss_dssp             SCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEE-E
T ss_pred             cceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcE-E
Confidence            2345554444443332221                       123467777777777554 66667789999877643 2


Q ss_pred             Eeec---cCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEec------CCCcceeEECCCCCeEEEE
Q 022716          207 TFTK---LEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPC------RAAMNSVEWNPKYNLLAYA  271 (293)
Q Consensus       207 ~~~~---~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~------~~~i~~~~~sp~~~~la~~  271 (293)
                      .+..   ....|.++...++|+..+.. . +-+..++..+++.......      ...|.++...++|.+.+.+
T Consensus       441 ~~~~~~~~~~~v~~i~~d~~g~lwigt-~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt  512 (781)
T 3v9f_A          441 IIELEKNELLDVRVFYEDKNKKIWIGT-H-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGT  512 (781)
T ss_dssp             ECCSTTTCCCCEEEEEECTTSEEEEEE-T-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEE
T ss_pred             EeccCCCCCCeEEEEEECCCCCEEEEE-C-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEE
Confidence            3321   23578899888888755543 3 4488888877654332211      2457788888888765544

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=96.92  E-value=0.22  Score=44.94  Aligned_cols=199  Identities=8%  Similarity=0.015  Sum_probs=116.7

Q ss_pred             ccEEEEEECCCCCeEE-EEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCC
Q 022716           21 KKVHSVAWNCTGTKLA-SGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG   99 (293)
Q Consensus        21 ~~v~~l~~s~~~~~l~-s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~   99 (293)
                      ..+..++|++.+..|. +-..++.|+.++++...  . ..+ ...-......+++.+.++.++++-...+.|.+.+++..
T Consensus        37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~--~-~~v-~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~  112 (628)
T 4a0p_A           37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSA--L-EHV-VEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQ  112 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS--C-EEE-ECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTST
T ss_pred             CceEEEEEECCCCEEEEEECCCCeEEEEECCCCC--c-EEE-EeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCC
Confidence            4678999998776665 55557888888876321  1 111 11112334567776665667777777889999998654


Q ss_pred             eeeeee-eecCceEEEEEcCCCCEEEEEeC--CCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEE
Q 022716          100 KCSQQA-ELSGENINITYKPDGTHIAVGNR--DDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCI  176 (293)
Q Consensus       100 ~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~--d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  176 (293)
                      ...... ..-..+..+++.|....|.....  .+.|...++.......                     +...-.....|
T Consensus       113 ~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~---------------------l~~~~~~P~Gl  171 (628)
T 4a0p_A          113 HRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTT---------------------LVPNVGRANGL  171 (628)
T ss_dssp             TCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE---------------------EECSCSSEEEE
T ss_pred             cEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEE---------------------EECCCCCcceE
Confidence            322222 22245678999986555554442  4566666654322111                     11123345678


Q ss_pred             EECCCCCE-EEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCE
Q 022716          177 AIDPMGRY-FAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRT  246 (293)
Q Consensus       177 ~~~~~~~~-l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~  246 (293)
                      ++++++.. +++=...+.|..+|+..... +.+...-.....|++.. +...++-...+.|...|..+++.
T Consensus       172 alD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~  240 (628)
T 4a0p_A          172 TIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQN  240 (628)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCS
T ss_pred             EEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCc
Confidence            88886544 44445667888888864322 22333233456777754 45556666678888888766653

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=96.84  E-value=0.15  Score=41.84  Aligned_cols=203  Identities=10%  Similarity=0.096  Sum_probs=118.5

Q ss_pred             EEEEEECCCCCeEEEEe-CCCcEEEeecCCCCCCceeEEEeeC----CcC--CeeEEEE---cCCCCCEEEEEe------
Q 022716           23 VHSVAWNCTGTKLASGS-VDQTARVWHIEPHGHGKVKDIELRG----HAD--SVDQLCW---DPKHADLIATAS------   86 (293)
Q Consensus        23 v~~l~~s~~~~~l~s~~-~dg~v~iw~~~~~~~~~~~~~~~~~----h~~--~i~~~~~---~~~~~~~l~s~~------   86 (293)
                      --+++|.+....|..++ ..++|..|+....   ......+.+    ...  .+..+.+   .|. +.+++...      
T Consensus        15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~---~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~-grL~vv~~~~~af~   90 (334)
T 2p9w_A           15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQ---SHFNVVIDGASSNGDGEQQMSGLSLLTHDNS-KRLFAVMKNAKSFN   90 (334)
T ss_dssp             CSCEEEETTTTEEEEEETTTTEEEEECTTTC---CEEEECCTTTCCSSCCSEEEEEEEESSSSSC-CEEEEEEEETTTTC
T ss_pred             CcCccCcCCCCEEEEEeccCCEEEEEcCCCC---eEEEEecCCccccCCCcceeeEEEEeccCCC-CcEEEEEccccccc
Confidence            34788987666665555 7999999988632   122222222    111  3578888   565 45665433      


Q ss_pred             -------CCCeEEEEeCC---CCeeeeeeeec--------------CceEEEEEcCCCCEEEEEeCC-CeEEEEEccccc
Q 022716           87 -------GDKTVRLWDAR---SGKCSQQAELS--------------GENINITYKPDGTHIAVGNRD-DELTILDVRKFK  141 (293)
Q Consensus        87 -------~d~~i~vwd~~---~~~~~~~~~~~--------------~~~~~~~~~~~~~~l~~~~~d-~~i~l~d~~~~~  141 (293)
                             .+..+..+|+.   +++......+.              .....++..++|+..++++.. +.|..++.....
T Consensus        91 ~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~  170 (334)
T 2p9w_A           91 FADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKT  170 (334)
T ss_dssp             TTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCC
T ss_pred             ccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCE
Confidence                   26779999998   77665544432              135578999999999988887 877777654321


Q ss_pred             eeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEE--EEEee--cc---CCC
Q 022716          142 PIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLC--VRTFT--KL---EWP  214 (293)
Q Consensus       142 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~--~~~~~--~~---~~~  214 (293)
                       ..           .|.....   .........-|+++|+++.|++....+.|.-+|+.....  +. ..  +.   -..
T Consensus       171 -~~-----------~~~~~~~---~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~-~~~~G~~~~~~~  234 (334)
T 2p9w_A          171 -VS-----------TFAWESG---NGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEP-VKINGDFGTLSG  234 (334)
T ss_dssp             -EE-----------EEEECCC---CSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEE-CEESSCCCCCTT
T ss_pred             -Ee-----------eeeecCC---CcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeec-ccccCCcccccC
Confidence             11           1110000   000111234578999999888887799999999875332  21 11  21   112


Q ss_pred             eeEE-EEccCCCE-EEEecCCCcEEEEEcCCCC
Q 022716          215 VRTI-SFSHTGDY-IASASEDLFIDISNVHTGR  245 (293)
Q Consensus       215 v~~l-~~sp~~~~-l~s~s~d~~i~iw~~~~~~  245 (293)
                      ...| .--.+|+. |++.+..+.+.+.+...-+
T Consensus       235 ~dgilp~~~~G~vllV~~~~~~~~~l~S~DgW~  267 (334)
T 2p9w_A          235 TEKIVTVPVGNESVLVGARAPYAISFRSWDNWK  267 (334)
T ss_dssp             EEEEEEEEETTEEEEEEEETTEEEEEECSSTTS
T ss_pred             cccccccccCCEEEEEEcCCCCEEEEECCCCcc
Confidence            3443 22246776 5666666665565554433

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=96.77  E-value=0.19  Score=41.89  Aligned_cols=217  Identities=10%  Similarity=0.049  Sum_probs=111.7

Q ss_pred             cccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEE--EeeCCcCCeeEEEEcCC---CCCEEEEEeC-------
Q 022716           20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDI--ELRGHADSVDQLCWDPK---HADLIATASG-------   87 (293)
Q Consensus        20 ~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~--~~~~h~~~i~~~~~~~~---~~~~l~s~~~-------   87 (293)
                      -.....++|.|+|+.|..+...|.|++++.+..........  ...........++++|+   +..++++-..       
T Consensus        17 l~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~   96 (353)
T 2g8s_A           17 LDHPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA   96 (353)
T ss_dssp             ESSEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred             CCCcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence            34678999999998344555679999887432100000000  01112334678899985   4445554332       


Q ss_pred             CCeEEEEeCCCC--ee--ee-eee-ec------CceEEEEEcCCCCEEEEEeC-------------CCeEEEEEccccc-
Q 022716           88 DKTVRLWDARSG--KC--SQ-QAE-LS------GENINITYKPDGTHIAVGNR-------------DDELTILDVRKFK-  141 (293)
Q Consensus        88 d~~i~vwd~~~~--~~--~~-~~~-~~------~~~~~~~~~~~~~~l~~~~~-------------d~~i~l~d~~~~~-  141 (293)
                      ...|..++....  ..  .. .+. ..      .....++|.|||.+.++.+.             .++|.-++..... 
T Consensus        97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p  176 (353)
T 2g8s_A           97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP  176 (353)
T ss_dssp             EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred             eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence            234555665432  11  11 111 11      11346999999965555432             2456666654321 


Q ss_pred             -----------eeeeecccc-eeeeeEEec-CCCEEEEecCC--------------------------------------
Q 022716          142 -----------PIHRRKFGY-EVNEIAWNM-TGEMFFLTTGN--------------------------------------  170 (293)
Q Consensus       142 -----------~~~~~~~~~-~~~~v~~~~-~~~~~~~~~~~--------------------------------------  170 (293)
                                 .......+. ....+.|++ .+.++....+.                                      
T Consensus       177 ~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~~  256 (353)
T 2g8s_A          177 DDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEI  256 (353)
T ss_dssp             TTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBSS
T ss_pred             CCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCCC
Confidence                       011111121 256677887 45444422210                                      


Q ss_pred             --------------CCEEEEEECC-------CCCEEEEecCCCcEEEEeCCCCEEEEE--e-eccCCCeeEEEEccCCCE
Q 022716          171 --------------AGCYCIAIDP-------MGRYFAVGSADSLVSLWDISEMLCVRT--F-TKLEWPVRTISFSHTGDY  226 (293)
Q Consensus       171 --------------~~~~~~~~~~-------~~~~l~~gs~d~~i~iwd~~~~~~~~~--~-~~~~~~v~~l~~sp~~~~  226 (293)
                                    .....+++..       ++.++++.-..+.|...+++.+.....  + ......+..+++.|||.+
T Consensus       257 ~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~l  336 (353)
T 2g8s_A          257 VAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYL  336 (353)
T ss_dssp             CTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCE
T ss_pred             CCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcE
Confidence                          0122344432       466666666677777777765543322  2 122347889999999986


Q ss_pred             EEE-ecCCCcE
Q 022716          227 IAS-ASEDLFI  236 (293)
Q Consensus       227 l~s-~s~d~~i  236 (293)
                      .++ -..++.|
T Consensus       337 yv~td~~~g~I  347 (353)
T 2g8s_A          337 YVLTDESSGEL  347 (353)
T ss_dssp             EEEECSTTEEE
T ss_pred             EEEEeCCCCEE
Confidence            554 3334433

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=96.69  E-value=0.011  Score=54.23  Aligned_cols=156  Identities=8%  Similarity=-0.071  Sum_probs=84.5

Q ss_pred             CeeEEEEcCCCCCEEEEEeCCCeEEEEeCCC----Ceeeeeee-ecCceEEEEEcCCC-CEEEEEeCCCeEEEEEccccc
Q 022716           68 SVDQLCWDPKHADLIATASGDKTVRLWDARS----GKCSQQAE-LSGENINITYKPDG-THIAVGNRDDELTILDVRKFK  141 (293)
Q Consensus        68 ~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~----~~~~~~~~-~~~~~~~~~~~~~~-~~l~~~~~d~~i~l~d~~~~~  141 (293)
                      .+..++|.+....++++-...+.|+.+++..    ......+. .-..+..+++.+.+ +.+++-...+.|.++++....
T Consensus       407 ~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~  486 (699)
T 1n7d_A          407 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK  486 (699)
T ss_dssp             TCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCC
T ss_pred             ceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCc
Confidence            4567788876555555555678899988865    11111111 11234467777544 444444456778888765432


Q ss_pred             eeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecC--CCcEEEEeCCCCEEEEEeeccCCCeeEEE
Q 022716          142 PIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSA--DSLVSLWDISEMLCVRTFTKLEWPVRTIS  219 (293)
Q Consensus       142 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~--d~~i~iwd~~~~~~~~~~~~~~~~v~~l~  219 (293)
                      ......                    ........++++|.+.+|.....  .+.|..+++........+...-...+.|+
T Consensus       487 ~~~l~~--------------------~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGla  546 (699)
T 1n7d_A          487 RKTLFR--------------------EQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGIT  546 (699)
T ss_dssp             EEEECC--------------------CSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEE
T ss_pred             eEEEEe--------------------CCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEE
Confidence            211110                    01112235677776544443332  26777777653221111112223567899


Q ss_pred             EccCCCEE-EEecCCCcEEEEEcCC
Q 022716          220 FSHTGDYI-ASASEDLFIDISNVHT  243 (293)
Q Consensus       220 ~sp~~~~l-~s~s~d~~i~iw~~~~  243 (293)
                      |+|++..| ++-+....|..++...
T Consensus       547 vd~~~~~LY~aD~~~~~I~~~d~dG  571 (699)
T 1n7d_A          547 LDLLSGRLYWVDSKLHSISSIDVNG  571 (699)
T ss_dssp             ECTTTCCEEEEETTTTEEEEECSSS
T ss_pred             EeccCCEEEEEecCCCeEEEEccCC
Confidence            99986554 5556677899998864

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=96.54  E-value=0.35  Score=42.16  Aligned_cols=210  Identities=10%  Similarity=0.047  Sum_probs=106.5

Q ss_pred             cEEEEEECCC-CCeE-EEEeCCCcEEEeecCCCCCCceeEEEeeC--CcCCeeEEEE-------cCCCCCEEEEEeCCC-
Q 022716           22 KVHSVAWNCT-GTKL-ASGSVDQTARVWHIEPHGHGKVKDIELRG--HADSVDQLCW-------DPKHADLIATASGDK-   89 (293)
Q Consensus        22 ~v~~l~~s~~-~~~l-~s~~~dg~v~iw~~~~~~~~~~~~~~~~~--h~~~i~~~~~-------~~~~~~~l~s~~~d~-   89 (293)
                      ....|+|+|. ...| ++-...+.|++.|++.+   .+..+.-.+  .......++|       ++++..++++-..++ 
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~---~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~  216 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNR---MLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGK  216 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTT---EEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTT
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCC---EEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCC
Confidence            4678999983 4444 44444567888887642   222111111  1234788899       887543444433332 


Q ss_pred             -----eEEEEeCCC-Ceee-----eeeeecCceEEEEEcCCCC-EEEEEeCCCeEEEEEcc-------ccceeee---ec
Q 022716           90 -----TVRLWDARS-GKCS-----QQAELSGENINITYKPDGT-HIAVGNRDDELTILDVR-------KFKPIHR---RK  147 (293)
Q Consensus        90 -----~i~vwd~~~-~~~~-----~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~l~d~~-------~~~~~~~---~~  147 (293)
                           .|.+.+... +...     ..+....++..++.+|++. .+++-..++.|..+|+.       +......   ..
T Consensus       217 ~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~  296 (496)
T 3kya_A          217 GDESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNN  296 (496)
T ss_dssp             GGGEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGC
T ss_pred             cccCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccc
Confidence                 255555333 2221     1222223556788899544 45555577889999987       3221000   00


Q ss_pred             ccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCE-EEEecCCCcEEEEeC--CCCEE--EEEeecc---C-------
Q 022716          148 FGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRY-FAVGSADSLVSLWDI--SEMLC--VRTFTKL---E-------  212 (293)
Q Consensus       148 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~gs~d~~i~iwd~--~~~~~--~~~~~~~---~-------  212 (293)
                      .+ ...         .++..........++++|++++ +++=+....|+.++.  ..+..  ...+.+.   .       
T Consensus       297 ~g-~~~---------~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~  366 (496)
T 3kya_A          297 PN-TFK---------QLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVG  366 (496)
T ss_dssp             TT-TEE---------EEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBG
T ss_pred             cc-ccc---------eeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcc
Confidence            00 000         0111112233567899999985 455456677888654  33321  0122221   0       


Q ss_pred             -----CCee-EEEEc-------cCCCEEEEecCCCcEEEEEcCCCC
Q 022716          213 -----WPVR-TISFS-------HTGDYIASASEDLFIDISNVHTGR  245 (293)
Q Consensus       213 -----~~v~-~l~~s-------p~~~~l~s~s~d~~i~iw~~~~~~  245 (293)
                           .... .+...       ++|.+.++-.....|+.++ .+|.
T Consensus       367 ~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~  411 (496)
T 3kya_A          367 TEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI  411 (496)
T ss_dssp             GGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB
T ss_pred             cccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC
Confidence                 1233 34443       4566666666777788777 3553

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=96.49  E-value=0.25  Score=39.85  Aligned_cols=227  Identities=8%  Similarity=0.051  Sum_probs=106.3

Q ss_pred             CeEEEEeCC--CcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCC----CeEEEEeCCCCeeeeeee
Q 022716           33 TKLASGSVD--QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD----KTVRLWDARSGKCSQQAE  106 (293)
Q Consensus        33 ~~l~s~~~d--g~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d----~~i~vwd~~~~~~~~~~~  106 (293)
                      ..++.|+.+  ..+.+||...+......  .++.....-..+..   +..+++.|+.+    ..+.+||..+.+......
T Consensus        13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~--~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~   87 (306)
T 3ii7_A           13 YRIALFGGSQPQSCRYFNPKDYSWTDIR--CPFEKRRDAACVFW---DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLG   87 (306)
T ss_dssp             EEEEEECCSSTTSEEEEETTTTEEEECC--CCSCCCBSCEEEEE---TTEEEEECCBSSSBCCEEEEEETTTTEEEEEEC
T ss_pred             eEEEEeCCCCCceEEEecCCCCCEecCC--CCCcccceeEEEEE---CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCC
Confidence            345566653  56777887643211111  01111111122222   23566666654    567888988876443322


Q ss_pred             ecCce--EEEEEcCCCCEEEEEeCC------CeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEE
Q 022716          107 LSGEN--INITYKPDGTHIAVGNRD------DELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAI  178 (293)
Q Consensus       107 ~~~~~--~~~~~~~~~~~l~~~~~d------~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  178 (293)
                      .....  ..++ ..+++.++.|+.+      ..+.++|+.+..-......+..                  .....++. 
T Consensus        88 ~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~------------------r~~~~~~~-  147 (306)
T 3ii7_A           88 PPTPRDSLAAC-AAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQ------------------RCSHGMVE-  147 (306)
T ss_dssp             CSSCCBSCEEE-EETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSC------------------CBSCEEEE-
T ss_pred             CCccccceeEE-EECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCC------------------cceeEEEE-
Confidence            22111  1122 2256677777654      3467777765432211111000                  00111122 


Q ss_pred             CCCCCEEEEecC---------CCcEEEEeCCCCEEEEEeeccCCC-eeEEEEccCCCEEEEecCC-----CcEEEEEcCC
Q 022716          179 DPMGRYFAVGSA---------DSLVSLWDISEMLCVRTFTKLEWP-VRTISFSHTGDYIASASED-----LFIDISNVHT  243 (293)
Q Consensus       179 ~~~~~~l~~gs~---------d~~i~iwd~~~~~~~~~~~~~~~~-v~~l~~sp~~~~l~s~s~d-----~~i~iw~~~~  243 (293)
                       .++++++.|+.         -+.+.+||+.+..-.. +.....+ ....+..-+++.++.|+.+     ..+.++|..+
T Consensus       148 -~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~-~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~  225 (306)
T 3ii7_A          148 -ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTE-LCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKL  225 (306)
T ss_dssp             -ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEE-ECCCSSCCBSCEEEEETTEEEEECCEETTEEBCCEEEEETTT
T ss_pred             -ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEE-CCCccchhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCCC
Confidence             25566666653         3458899988764322 2111111 1111112267777777654     3578888877


Q ss_pred             CCEEE--EEec-CCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeee
Q 022716          244 GRTVH--QIPC-RAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE  291 (293)
Q Consensus       244 ~~~~~--~~~~-~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~  291 (293)
                      .+-..  .++. +.....+.+  ++.+++.||.++...   ...+-+|+.+
T Consensus       226 ~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~---~~~~~~yd~~  271 (306)
T 3ii7_A          226 NEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGR---LGHILEYNTE  271 (306)
T ss_dssp             TEEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSB---CCEEEEEETT
T ss_pred             CcEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCee---eeeEEEEcCC
Confidence            64322  1221 111222333  677888888765432   1234555544

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=96.45  E-value=0.26  Score=39.62  Aligned_cols=216  Identities=13%  Similarity=0.078  Sum_probs=101.9

Q ss_pred             CCCeEEEEe-CC-----CcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCC-----CeEEEEeCCCC
Q 022716           31 TGTKLASGS-VD-----QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD-----KTVRLWDARSG   99 (293)
Q Consensus        31 ~~~~l~s~~-~d-----g~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d-----~~i~vwd~~~~   99 (293)
                      ++..++.|+ .+     ..+.+||..........  .++........+..   +..+++.|+.+     ..+.+||..+.
T Consensus        14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~--~~p~~r~~~~~~~~---~~~l~v~GG~~~~~~~~~~~~~d~~~~   88 (301)
T 2vpj_A           14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLP--SITRKRRYVASVSL---HDRIYVIGGYDGRSRLSSVECLDYTAD   88 (301)
T ss_dssp             CEEEEEECCEETTTEECCCEEEEETTTTEEEECC--CCSSCCBSCEEEEE---TTEEEEECCBCSSCBCCCEEEEETTCC
T ss_pred             CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCC--CCChhhccccEEEE---CCEEEEEcCCCCCccCceEEEEECCCC
Confidence            445667777 33     36777887643211111  11111111112222   24566667654     35888998776


Q ss_pred             e---eeeeeeecCc--eEEEEEcCCCCEEEEEeCC-----CeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecC
Q 022716          100 K---CSQQAELSGE--NINITYKPDGTHIAVGNRD-----DELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG  169 (293)
Q Consensus       100 ~---~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d-----~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  169 (293)
                      +   ..........  ...++. .+++.++.|+.+     ..+.++|+.+.+-......+          .        .
T Consensus        89 ~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p----------~--------~  149 (301)
T 2vpj_A           89 EDGVWYSVAPMNVRRGLAGATT-LGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQ----------T--------A  149 (301)
T ss_dssp             TTCCCEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECS----------S--------C
T ss_pred             CCCeeEECCCCCCCccceeEEE-ECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCC----------C--------C
Confidence            5   3322111111  112222 256666776643     34667776554322111100          0        0


Q ss_pred             CCCEEEEEECCCCCEEEEecCC-----CcEEEEeCCCCEEEEE--eeccCCCeeEEEEccCCCEEEEecCC-----CcEE
Q 022716          170 NAGCYCIAIDPMGRYFAVGSAD-----SLVSLWDISEMLCVRT--FTKLEWPVRTISFSHTGDYIASASED-----LFID  237 (293)
Q Consensus       170 ~~~~~~~~~~~~~~~l~~gs~d-----~~i~iwd~~~~~~~~~--~~~~~~~v~~l~~sp~~~~l~s~s~d-----~~i~  237 (293)
                      .....++.+  +++.++.|+.+     +.+..||+.+..-...  +......-..+  ..+++.++.|+.+     ..+.
T Consensus       150 r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~~~~~i~v~GG~~~~~~~~~v~  225 (301)
T 2vpj_A          150 REGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVA--LLNDHIYVVGGFDGTAHLSSVE  225 (301)
T ss_dssp             CBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEE--EETTEEEEECCBCSSSBCCCEE
T ss_pred             cccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEE--EECCEEEEEeCCCCCcccceEE
Confidence            001112222  56677777654     4688999877643322  11111111222  2367777777764     4588


Q ss_pred             EEEcCCCCEEEE--EecCC-CcceeEECCCCCeEEEEEcCCC
Q 022716          238 ISNVHTGRTVHQ--IPCRA-AMNSVEWNPKYNLLAYAGDDKN  276 (293)
Q Consensus       238 iw~~~~~~~~~~--~~~~~-~i~~~~~sp~~~~la~~~~d~~  276 (293)
                      ++|..+.+-...  ++... ....+.+  ++.+++.||.++.
T Consensus       226 ~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~  265 (301)
T 2vpj_A          226 AYNIRTDSWTTVTSMTTPRCYVGATVL--RGRLYAIAGYDGN  265 (301)
T ss_dssp             EEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSS
T ss_pred             EEeCCCCcEEECCCCCCcccceeEEEE--CCEEEEEcCcCCC
Confidence            999887653221  22111 1122223  5678888886643

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.41  E-value=0.33  Score=40.38  Aligned_cols=100  Identities=15%  Similarity=0.143  Sum_probs=63.4

Q ss_pred             CEEEEEECCCCCEEEEec-----------------CCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEe-cCC
Q 022716          172 GCYCIAIDPMGRYFAVGS-----------------ADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASA-SED  233 (293)
Q Consensus       172 ~~~~~~~~~~~~~l~~gs-----------------~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~-s~d  233 (293)
                      ....+++.++|+++++..                 ..|.|..+|..+.   ..+...-...+.++|+||+++|+.+ +..
T Consensus       166 ~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~~---~~~~~~l~~pNGia~spDg~~lYvadt~~  242 (355)
T 3sre_A          166 SVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDV---RVVAEGFDFANGINISPDGKYVYIAELLA  242 (355)
T ss_dssp             SEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTCC---EEEEEEESSEEEEEECTTSSEEEEEEGGG
T ss_pred             CCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECCeE---EEeecCCcccCcceECCCCCEEEEEeCCC
Confidence            355677788888777754                 1245655655322   2222222457999999999877555 567


Q ss_pred             CcEEEEEcCC-CCE--EEEEecCCCcceeEECC-CCCeEEEEEcC
Q 022716          234 LFIDISNVHT-GRT--VHQIPCRAAMNSVEWNP-KYNLLAYAGDD  274 (293)
Q Consensus       234 ~~i~iw~~~~-~~~--~~~~~~~~~i~~~~~sp-~~~~la~~~~d  274 (293)
                      +.|..|++.. +..  .+.+........++..+ +|++.+++..+
T Consensus       243 ~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G~lwva~~~~  287 (355)
T 3sre_A          243 HKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCHPN  287 (355)
T ss_dssp             TEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEESC
T ss_pred             CeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCCcEEEEecCC
Confidence            8899999863 432  22333334456788998 59988877533

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=96.11  E-value=0.26  Score=40.98  Aligned_cols=147  Identities=17%  Similarity=0.165  Sum_probs=75.2

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCC----CCE
Q 022716          109 GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPM----GRY  184 (293)
Q Consensus       109 ~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~  184 (293)
                      ..+..++|.|+|+.++++...++|.+++..... ..... +  +..          ...........++++|+    +.+
T Consensus        18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~-~~~~~-~--~~~----------v~~~g~~g~~gia~~pdf~~~g~l   83 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLITLRGGELRHWQAGKGL-SAPLS-G--VPD----------VWAHGQGGLLDVVLAPDFAQSRRI   83 (353)
T ss_dssp             SSEEEEEECSTTCCEEEEETTTEEEEEETTTEE-CCCCB-S--CCC----------CCCSTTCSEEEEEECTTHHHHCEE
T ss_pred             CCcEEEEEcCCCCEEEEEeCCceEEEEeCCCce-eeEec-C--Ccc----------cccCCCCCceeEEECCCCCCCCEE
Confidence            456789999999845555668999988853211 10000 0  000          01122344567888885    444


Q ss_pred             EEEecC-------CCcEEEEeCCCC----EEEEE-eeccC------CCeeEEEEccCCCEEEEecC-------------C
Q 022716          185 FAVGSA-------DSLVSLWDISEM----LCVRT-FTKLE------WPVRTISFSHTGDYIASASE-------------D  233 (293)
Q Consensus       185 l~~gs~-------d~~i~iwd~~~~----~~~~~-~~~~~------~~v~~l~~sp~~~~l~s~s~-------------d  233 (293)
                      .++-+.       ...|..|++...    ...+. +....      -....|.|.|+|.+.++-+.             .
T Consensus        84 Yv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~  163 (353)
T 2g8s_A           84 WLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQ  163 (353)
T ss_dssp             EEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCT
T ss_pred             EEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCC
Confidence            444332       234555655432    11111 11111      12467999999966555433             2


Q ss_pred             CcEEEEEcCCC--------------CEEEEEecCCCcceeEECC-CCCeEEE
Q 022716          234 LFIDISNVHTG--------------RTVHQIPCRAAMNSVEWNP-KYNLLAY  270 (293)
Q Consensus       234 ~~i~iw~~~~~--------------~~~~~~~~~~~i~~~~~sp-~~~~la~  270 (293)
                      +.|.-.+....              ..+....++ ....++|+| ++.++++
T Consensus       164 g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~r-np~gl~~d~~~g~l~~~  214 (353)
T 2g8s_A          164 GKLVRLTDQGEIPDDNPFIKESGVRAEIWSYGIR-NPQGMAMNPWSNALWLN  214 (353)
T ss_dssp             TEEEEEETTSCCCTTCTTTTSTTSCTTEEEECCS-EEEEEEEETTTTEEEEE
T ss_pred             eEEEEECCCCCCCCCCCCcCCCCCCccEEEEcCc-CccceEEECCCCCEEEE
Confidence            35555555321              123333322 356799999 5655544

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=96.09  E-value=0.42  Score=38.43  Aligned_cols=186  Identities=15%  Similarity=0.101  Sum_probs=89.0

Q ss_pred             CCEEEEEeCC-----CeEEEEeCCCCeeeeeeeecCc--eEEEEEcCCCCEEEEEeCCC-----eEEEEEccccceeeee
Q 022716           79 ADLIATASGD-----KTVRLWDARSGKCSQQAELSGE--NINITYKPDGTHIAVGNRDD-----ELTILDVRKFKPIHRR  146 (293)
Q Consensus        79 ~~~l~s~~~d-----~~i~vwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d~-----~i~l~d~~~~~~~~~~  146 (293)
                      ..+++.|+.+     ..+.+||..+.+..........  ..+++. .+++.++.|+.++     .+..+|+.+..-....
T Consensus        62 ~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~  140 (302)
T 2xn4_A           62 GLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAV-LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVA  140 (302)
T ss_dssp             TEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEEC
T ss_pred             CEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEE-ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecC
Confidence            4566666654     3478889887764332221111  112222 2566777777543     3556666544321111


Q ss_pred             cccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCC-------CcEEEEeCCCCEEEEE--eeccCCCeeE
Q 022716          147 KFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSAD-------SLVSLWDISEMLCVRT--FTKLEWPVRT  217 (293)
Q Consensus       147 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d-------~~i~iwd~~~~~~~~~--~~~~~~~v~~  217 (293)
                      ..+.                  ......++.  .+++.++.|+.+       ..+.+||+.+..-...  +......-..
T Consensus       141 ~~p~------------------~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~  200 (302)
T 2xn4_A          141 PMNT------------------RRSSVGVGV--VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGV  200 (302)
T ss_dssp             CCSS------------------CCBSCEEEE--ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEE
T ss_pred             CCCC------------------cccCceEEE--ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccE
Confidence            1100                  000111122  256666666542       4588999877643321  1111111122


Q ss_pred             EEEccCCCEEEEecCC-----CcEEEEEcCCCCEEE--EEecCCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEee
Q 022716          218 ISFSHTGDYIASASED-----LFIDISNVHTGRTVH--QIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGF  290 (293)
Q Consensus       218 l~~sp~~~~l~s~s~d-----~~i~iw~~~~~~~~~--~~~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~  290 (293)
                      +.  .+++.++.|+.+     ..+.++|..+.+-..  .++....-..+. .-++.+++.||.++...   ...+-+|+.
T Consensus       201 ~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~-~~~~~i~v~GG~~~~~~---~~~v~~yd~  274 (302)
T 2xn4_A          201 GV--LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVC-AVNGLLYVVGGDDGSCN---LASVEYYNP  274 (302)
T ss_dssp             EE--ETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE-EETTEEEEECCBCSSSB---CCCEEEEET
T ss_pred             EE--ECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEE-EECCEEEEECCcCCCcc---cccEEEEcC
Confidence            22  367777887754     358899987764322  122111111122 22677888888765422   233455554


Q ss_pred             e
Q 022716          291 E  291 (293)
Q Consensus       291 ~  291 (293)
                      +
T Consensus       275 ~  275 (302)
T 2xn4_A          275 T  275 (302)
T ss_dssp             T
T ss_pred             C
Confidence            4

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=96.03  E-value=0.46  Score=38.37  Aligned_cols=105  Identities=11%  Similarity=0.071  Sum_probs=54.6

Q ss_pred             CCCEEEEecCC-----CcEEEEeCCCCEEEEE--eeccCCCeeEEEEccCCCEEEEecCC-----CcEEEEEcCCCCEEE
Q 022716          181 MGRYFAVGSAD-----SLVSLWDISEMLCVRT--FTKLEWPVRTISFSHTGDYIASASED-----LFIDISNVHTGRTVH  248 (293)
Q Consensus       181 ~~~~l~~gs~d-----~~i~iwd~~~~~~~~~--~~~~~~~v~~l~~sp~~~~l~s~s~d-----~~i~iw~~~~~~~~~  248 (293)
                      ++++++.|+.+     +.+.+||+.+.+-...  +......-..+.+  +++.++.|+.+     ..+.++|+.+.+-..
T Consensus       168 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~  245 (308)
T 1zgk_A          168 NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTF  245 (308)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred             CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEE
Confidence            56677777654     4588999877643221  1111111222222  67777777754     458899987764322


Q ss_pred             --EEecCCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeee
Q 022716          249 --QIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE  291 (293)
Q Consensus       249 --~~~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~  291 (293)
                        .++....-.++.. -++.+++.||.++...   ...+-+|+.+
T Consensus       246 ~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~---~~~v~~yd~~  286 (308)
T 1zgk_A          246 VAPMKHRRSALGITV-HQGRIYVLGGYDGHTF---LDSVECYDPD  286 (308)
T ss_dssp             CCCCSSCCBSCEEEE-ETTEEEEECCBCSSCB---CCEEEEEETT
T ss_pred             CCCCCCCccceEEEE-ECCEEEEEcCcCCCcc---cceEEEEcCC
Confidence              1221111112222 2577888888765322   1234455544

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=95.96  E-value=0.41  Score=41.34  Aligned_cols=111  Identities=6%  Similarity=0.051  Sum_probs=56.8

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCC----CCE
Q 022716          109 GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPM----GRY  184 (293)
Q Consensus       109 ~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~  184 (293)
                      ..+..++|.|+|+.+++-...+.|.+++..+........+...            +....+......++++|+    +.+
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~------------~~~~~g~~Gllgia~~Pdf~~~g~l   94 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEI------------VNDADGQNGLLGFAFHPDFKNNPYI   94 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTC------------CCCTTSSCSEEEEEECTTTTTSCEE
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCcc------------ccccCCCCceeEEEECCCcCcCCEE
Confidence            3567899999998766654445788887543322111000000            000013445667888884    444


Q ss_pred             EEEecC------------CCcEEEEeCCCC-------EEEE-Eeec-cCCCeeEEEEccCCCEEEEec
Q 022716          185 FAVGSA------------DSLVSLWDISEM-------LCVR-TFTK-LEWPVRTISFSHTGDYIASAS  231 (293)
Q Consensus       185 l~~gs~------------d~~i~iwd~~~~-------~~~~-~~~~-~~~~v~~l~~sp~~~~l~s~s  231 (293)
                      .++-+.            ...|.-|+....       +.+. .+.. ..-....|+|.|||.+.++.+
T Consensus        95 Yv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A           95 YISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             EEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             EEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence            444432            124555554321       1111 1211 111368899999998766544

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=95.95  E-value=0.49  Score=37.98  Aligned_cols=187  Identities=13%  Similarity=0.105  Sum_probs=91.3

Q ss_pred             CCCeEEEEeCC-----CcEEEeecCCCC---CCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCC-----CeEEEEeCC
Q 022716           31 TGTKLASGSVD-----QTARVWHIEPHG---HGKVKDIELRGHADSVDQLCWDPKHADLIATASGD-----KTVRLWDAR   97 (293)
Q Consensus        31 ~~~~l~s~~~d-----g~v~iw~~~~~~---~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d-----~~i~vwd~~   97 (293)
                      ++..++.|+.+     ..+.+||.....   .....  .++.....-..+..   +..+++.|+.+     ..+.+||+.
T Consensus        62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~--~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~d~~  136 (301)
T 2vpj_A           62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVA--PMNVRRGLAGATTL---GDMIYVSGGFDGSRRHTSMERYDPN  136 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEEC--CCSSCCBSCEEEEE---TTEEEEECCBCSSCBCCEEEEEETT
T ss_pred             CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECC--CCCCCccceeEEEE---CCEEEEEcccCCCcccceEEEEcCC
Confidence            56677788765     467888876543   22111  11111111122222   24566666543     357888988


Q ss_pred             CCeeeeeeeecCce--EEEEEcCCCCEEEEEeCC-----CeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCC
Q 022716           98 SGKCSQQAELSGEN--INITYKPDGTHIAVGNRD-----DELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGN  170 (293)
Q Consensus        98 ~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~d-----~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  170 (293)
                      +.+...........  .+++. .+++.++.|+.+     ..+..+|+.+..-......+.                  ..
T Consensus       137 ~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~------------------~r  197 (301)
T 2vpj_A          137 IDQWSMLGDMQTAREGAGLVV-ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMAT------------------KR  197 (301)
T ss_dssp             TTEEEEEEECSSCCBSCEEEE-ETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSS------------------CC
T ss_pred             CCeEEECCCCCCCcccceEEE-ECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCc------------------cc
Confidence            77644332222111  11222 256667777654     346667765543221110000                  00


Q ss_pred             CCEEEEEECCCCCEEEEecCC-----CcEEEEeCCCCEEEEE--eeccCCCeeEEEEccCCCEEEEecCC-----CcEEE
Q 022716          171 AGCYCIAIDPMGRYFAVGSAD-----SLVSLWDISEMLCVRT--FTKLEWPVRTISFSHTGDYIASASED-----LFIDI  238 (293)
Q Consensus       171 ~~~~~~~~~~~~~~l~~gs~d-----~~i~iwd~~~~~~~~~--~~~~~~~v~~l~~sp~~~~l~s~s~d-----~~i~i  238 (293)
                      ....++.+  ++++++.|+.+     +.+.+||+++.+-...  +......-..+  ..+++.++.|+.+     ..+.+
T Consensus       198 ~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~--~~~~~i~v~GG~~~~~~~~~v~~  273 (301)
T 2vpj_A          198 SGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGAT--VLRGRLYAIAGYDGNSLLSSIEC  273 (301)
T ss_dssp             BSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE--EETTEEEEECCBCSSSBEEEEEE
T ss_pred             ccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEE--EECCEEEEEcCcCCCcccccEEE
Confidence            01112222  56777777654     4689999987653322  11111111222  2367777777755     34678


Q ss_pred             EEcCCCC
Q 022716          239 SNVHTGR  245 (293)
Q Consensus       239 w~~~~~~  245 (293)
                      +|..+.+
T Consensus       274 yd~~~~~  280 (301)
T 2vpj_A          274 YDPIIDS  280 (301)
T ss_dssp             EETTTTE
T ss_pred             EcCCCCe
Confidence            8877654

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=95.78  E-value=0.41  Score=39.80  Aligned_cols=104  Identities=17%  Similarity=0.156  Sum_probs=62.5

Q ss_pred             CCEEEEEECCCCCEEEEecCCCcEEEEeCCCCE-EEEEee---ccCCCeeEEEEccC---CCEE-EEecC---C----Cc
Q 022716          171 AGCYCIAIDPMGRYFAVGSADSLVSLWDISEML-CVRTFT---KLEWPVRTISFSHT---GDYI-ASASE---D----LF  235 (293)
Q Consensus       171 ~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~-~~~~~~---~~~~~v~~l~~sp~---~~~l-~s~s~---d----~~  235 (293)
                      .....+++.|+++++++ ..++.|++++ .++. .+..+.   ........|+|+|+   +..| ++-+.   +    ..
T Consensus        29 ~~P~~ia~~pdG~l~V~-e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~  106 (354)
T 3a9g_A           29 EVPWSIAPLGGGRYLVT-ERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR  106 (354)
T ss_dssp             SCEEEEEEEETTEEEEE-ETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred             CCCeEEEEcCCCeEEEE-eCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence            44668899999986555 4559999997 3454 222221   12245889999998   4444 44332   3    55


Q ss_pred             EEEEEcCCC--C-----EE-EEEecC--CCcceeEECCCCCeEEEEEcCCC
Q 022716          236 IDISNVHTG--R-----TV-HQIPCR--AAMNSVEWNPKYNLLAYAGDDKN  276 (293)
Q Consensus       236 i~iw~~~~~--~-----~~-~~~~~~--~~i~~~~~sp~~~~la~~~~d~~  276 (293)
                      |..++....  .     .+ ..++..  ..-+.++|.|+|.++++.++..+
T Consensus       107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~  157 (354)
T 3a9g_A          107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAAD  157 (354)
T ss_dssp             EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTC
T ss_pred             EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCC
Confidence            777776543  1     11 223311  12467999999988887665443

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=95.72  E-value=0.74  Score=38.30  Aligned_cols=209  Identities=12%  Similarity=0.096  Sum_probs=100.2

Q ss_pred             EEEEEECCCCCeEEEEe------------CCCcEEEeecCCCCCCceeEEEeeCC-----cCCeeEEEEcC--CCCCEEE
Q 022716           23 VHSVAWNCTGTKLASGS------------VDQTARVWHIEPHGHGKVKDIELRGH-----ADSVDQLCWDP--KHADLIA   83 (293)
Q Consensus        23 v~~l~~s~~~~~l~s~~------------~dg~v~iw~~~~~~~~~~~~~~~~~h-----~~~i~~~~~~~--~~~~~l~   83 (293)
                      .-+++..|+|..+.+++            .+|.|.++|.+... .....+.+.+-     .-....+.+.+  ++...|+
T Consensus        52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~-~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~  130 (355)
T 3sre_A           52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKE-PAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL  130 (355)
T ss_dssp             CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSS-CCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCC-CceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence            44566778775444431            68999999986322 22233344331     11234444433  2222233


Q ss_pred             EE-eC--CCeEEEEeCCCC--eeeeeeeecC----ceEEEEEcCCCCEEEEEeC---CCeEEEEEccccceeeeecccce
Q 022716           84 TA-SG--DKTVRLWDARSG--KCSQQAELSG----ENINITYKPDGTHIAVGNR---DDELTILDVRKFKPIHRRKFGYE  151 (293)
Q Consensus        84 s~-~~--d~~i~vwd~~~~--~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~---d~~i~l~d~~~~~~~~~~~~~~~  151 (293)
                      .+ ..  +..|.+|++..+  .........+    .+..+++.++|...++...   |.....++.        ......
T Consensus       131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~--------~~~~~~  202 (355)
T 3sre_A          131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEM--------HLGLAW  202 (355)
T ss_dssp             EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHH--------HTTCCC
T ss_pred             EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchh--------hccCCc
Confidence            33 22  466777765433  2222212222    2346777788776665431   100000000        000000


Q ss_pred             eeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEe-cCCCcEEEEeCCC-CE--EEEEeeccCCCeeEEEEcc-CCCE
Q 022716          152 VNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVG-SADSLVSLWDISE-ML--CVRTFTKLEWPVRTISFSH-TGDY  226 (293)
Q Consensus       152 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g-s~d~~i~iwd~~~-~~--~~~~~~~~~~~v~~l~~sp-~~~~  226 (293)
                      -.-..+++. +...+..+-....-++++|+++.|..+ +..+.|..|++.. +.  ..+.+ ........+++.+ +|++
T Consensus       203 g~vyr~d~~-~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~l  280 (355)
T 3sre_A          203 SFVTYYSPN-DVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDL  280 (355)
T ss_dssp             EEEEEECTT-CCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCE
T ss_pred             cEEEEEECC-eEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcE
Confidence            001112221 111122222334568999999765554 5678899999853 32  22233 3345678899999 5988


Q ss_pred             EEEecCC-CcEEEEEcC
Q 022716          227 IASASED-LFIDISNVH  242 (293)
Q Consensus       227 l~s~s~d-~~i~iw~~~  242 (293)
                      .+++..+ +.|..++..
T Consensus       281 wva~~~~g~~v~~~~P~  297 (355)
T 3sre_A          281 WVGCHPNGMRIFFYDAE  297 (355)
T ss_dssp             EEEEESCHHHHHSCCTT
T ss_pred             EEEecCCceEEEEECCC
Confidence            7766534 334444443

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=95.69  E-value=0.75  Score=38.15  Aligned_cols=103  Identities=14%  Similarity=0.131  Sum_probs=63.0

Q ss_pred             CCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEE--EEEee---ccCCCeeEEEEccC---CCEEE-EecCC-----CcE
Q 022716          171 AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLC--VRTFT---KLEWPVRTISFSHT---GDYIA-SASED-----LFI  236 (293)
Q Consensus       171 ~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~--~~~~~---~~~~~v~~l~~sp~---~~~l~-s~s~d-----~~i  236 (293)
                      .....+++.|+++++++ ..++.|.+++  .+..  +..+.   .-......|+|+|+   +..|. +-...     ..|
T Consensus        31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v  107 (352)
T 2ism_A           31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV  107 (352)
T ss_dssp             SCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred             CCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence            34568999999996655 4569999998  4432  11121   11346889999998   55443 33322     567


Q ss_pred             EEEEcCCCC-----EE-EEEec--C--CCcceeEECCCCCeEEEEEcCCC
Q 022716          237 DISNVHTGR-----TV-HQIPC--R--AAMNSVEWNPKYNLLAYAGDDKN  276 (293)
Q Consensus       237 ~iw~~~~~~-----~~-~~~~~--~--~~i~~~~~sp~~~~la~~~~d~~  276 (293)
                      ..++...+.     .+ ..++.  .  .....++|.|+|.++++.++..+
T Consensus       108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~  157 (352)
T 2ism_A          108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYE  157 (352)
T ss_dssp             EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTC
T ss_pred             EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCC
Confidence            777766432     11 22331  1  12468999999988777665443

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=95.64  E-value=0.39  Score=40.83  Aligned_cols=112  Identities=13%  Similarity=0.195  Sum_probs=73.4

Q ss_pred             cEEEEEECCCCCeEEEEeCCCcEEEeecCCCC---CC-----cee--EEEeeC----CcCCeeEEEEcCCCC--CEEEEE
Q 022716           22 KVHSVAWNCTGTKLASGSVDQTARVWHIEPHG---HG-----KVK--DIELRG----HADSVDQLCWDPKHA--DLIATA   85 (293)
Q Consensus        22 ~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~---~~-----~~~--~~~~~~----h~~~i~~~~~~~~~~--~~l~s~   85 (293)
                      .|..+..||+|++||..+ +..|.|-.+....   .+     ...  ...+..    ...+|..+.|||-+.  ..|+.-
T Consensus        67 ~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL  145 (452)
T 3pbp_A           67 DTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL  145 (452)
T ss_dssp             TTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred             ceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence            577799999999998776 4678887775211   00     011  112211    246799999999653  478889


Q ss_pred             eCCCeEEEEeCCCCeeee-eee-----ec-----CceEEEEEcCCCCEEEEEe--CCCeEEE
Q 022716           86 SGDKTVRLWDARSGKCSQ-QAE-----LS-----GENINITYKPDGTHIAVGN--RDDELTI  134 (293)
Q Consensus        86 ~~d~~i~vwd~~~~~~~~-~~~-----~~-----~~~~~~~~~~~~~~l~~~~--~d~~i~l  134 (293)
                      ..|+.|++||+....... .+.     +.     ..+.+++|.+++-.|.+.+  +.|-|.-
T Consensus       146 tsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYA  207 (452)
T 3pbp_A          146 KEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFA  207 (452)
T ss_dssp             ETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEE
T ss_pred             ecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEE
Confidence            999999999997532111 111     11     3456789999888887755  6777654

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=95.57  E-value=0.71  Score=38.24  Aligned_cols=111  Identities=17%  Similarity=0.130  Sum_probs=68.8

Q ss_pred             ecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEE--EEEee----ccCCCeeEEEEccC---CCEEEE---ecCCC
Q 022716          167 TTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLC--VRTFT----KLEWPVRTISFSHT---GDYIAS---ASEDL  234 (293)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~--~~~~~----~~~~~v~~l~~sp~---~~~l~s---~s~d~  234 (293)
                      +.+-.....+++.|+++.+++--..|.|++++...+..  +..+.    ........|+|+|+   +.+|..   ...+.
T Consensus        28 a~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~  107 (347)
T 3das_A           28 ATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDN  107 (347)
T ss_dssp             ECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSE
T ss_pred             ecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCC
Confidence            34445567899999999887776689999998765543  22221    12346789999996   344432   23445


Q ss_pred             cEEEEEcCCC----------CEE-EEEec--CCCcceeEECCCCCeEEEEEcCCCC
Q 022716          235 FIDISNVHTG----------RTV-HQIPC--RAAMNSVEWNPKYNLLAYAGDDKNK  277 (293)
Q Consensus       235 ~i~iw~~~~~----------~~~-~~~~~--~~~i~~~~~sp~~~~la~~~~d~~~  277 (293)
                      .|.-+....+          +.+ ..++.  ...-..|.|.|+|.++++.|+..+.
T Consensus       108 ~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~  163 (347)
T 3das_A          108 RIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDT  163 (347)
T ss_dssp             EEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCG
T ss_pred             EEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCC
Confidence            5655554431          112 23332  1134679999999988888765544

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=95.48  E-value=0.02  Score=44.09  Aligned_cols=94  Identities=11%  Similarity=0.063  Sum_probs=60.3

Q ss_pred             CEEEEEECCCCCEEEEecCCCcEEEEeCCCC---------EEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcC
Q 022716          172 GCYCIAIDPMGRYFAVGSADSLVSLWDISEM---------LCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVH  242 (293)
Q Consensus       172 ~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~---------~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~  242 (293)
                      .+..++|+|++.+.++  .+|.+.-.+..+.         ..+... +-. .-.++.|.|+|.+-++  .|+.|+-++..
T Consensus        42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~-Gw~-~F~a~~fD~~G~LYav--~dG~iyr~~pP  115 (236)
T 1tl2_A           42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNG-GWN-QFQFLFFDPNGYLYAV--SKDKLYKASPP  115 (236)
T ss_dssp             TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECS-CGG-GCSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred             cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccc-ccc-cceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence            3457999999998888  6777666665331         111100 111 2478999999987777  66999888764


Q ss_pred             CCCEE------EEEecC--CCcceeEECCCCCeEEEE
Q 022716          243 TGRTV------HQIPCR--AAMNSVEWNPKYNLLAYA  271 (293)
Q Consensus       243 ~~~~~------~~~~~~--~~i~~~~~sp~~~~la~~  271 (293)
                      +....      ..+...  ..+..|.|.|+|.+.|..
T Consensus       116 ~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~  152 (236)
T 1tl2_A          116 QSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH  152 (236)
T ss_dssp             CSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE
T ss_pred             cCCCCceeccccEeccCCCCceEEEEECCCceEEEEe
Confidence            32110      111111  247889999999999998

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=95.28  E-value=1.1  Score=37.23  Aligned_cols=109  Identities=11%  Similarity=0.012  Sum_probs=60.9

Q ss_pred             ecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEE-e----eCCcCCeeEEEEcCC---CCCEEEEE--
Q 022716           16 YTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIE-L----RGHADSVDQLCWDPK---HADLIATA--   85 (293)
Q Consensus        16 ~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~-~----~~h~~~i~~~~~~~~---~~~~l~s~--   85 (293)
                      +-..-.....++|.|+|+.+++--..|.|++++.+..   ....+. +    .........++++|+   +..++++-  
T Consensus        27 va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g---~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~  103 (347)
T 3das_A           27 VATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTG---RKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTS  103 (347)
T ss_dssp             EECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTC---CEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEEC
T ss_pred             eecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCC---cEeeecccCceeecCCCCceeeEeccccccCCEEEEEEec
Confidence            3333457789999999997777666899998865321   111111 1    112345788999985   33344432  


Q ss_pred             eCCCeEEEEeCCCC-----e---eeee---eeecC--ceEEEEEcCCCCEEEEEe
Q 022716           86 SGDKTVRLWDARSG-----K---CSQQ---AELSG--ENINITYKPDGTHIAVGN  127 (293)
Q Consensus        86 ~~d~~i~vwd~~~~-----~---~~~~---~~~~~--~~~~~~~~~~~~~l~~~~  127 (293)
                      ..+..|.-|....+     .   ....   +....  ....++|.|||.+.++.+
T Consensus       104 ~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~G  158 (347)
T 3das_A          104 ASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTG  158 (347)
T ss_dssp             SSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECB
T ss_pred             CCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEEC
Confidence            23455655655431     1   1111   11111  123589999998776654

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=95.19  E-value=0.95  Score=36.26  Aligned_cols=188  Identities=15%  Similarity=0.176  Sum_probs=87.7

Q ss_pred             CCCeEEEEeCCC-----cEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCC-----eEEEEeCCCCe
Q 022716           31 TGTKLASGSVDQ-----TARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDK-----TVRLWDARSGK  100 (293)
Q Consensus        31 ~~~~l~s~~~dg-----~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~-----~i~vwd~~~~~  100 (293)
                      ++..++.|+.++     .+.+||..........  .++.....-..+.+   +..+++.|+.++     .+.+||+.+.+
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~--~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~d~~~~~  135 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVA--NMRDRRSTLGAAVL---NGLLYAVGGFDGSTGLSSVEAYNIKSNE  135 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEEEEEC--CCSSCCBSCEEEEE---TTEEEEEEEECSSCEEEEEEEEETTTTE
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCceeeCC--CCCccccceEEEEE---CCEEEEEcCCCCCccCceEEEEeCCCCe
Confidence            566777887653     5677776543211111  01111111112222   235666676553     46778887765


Q ss_pred             eeeeeeecCce--EEEEEcCCCCEEEEEeCC-------CeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCC
Q 022716          101 CSQQAELSGEN--INITYKPDGTHIAVGNRD-------DELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNA  171 (293)
Q Consensus       101 ~~~~~~~~~~~--~~~~~~~~~~~l~~~~~d-------~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  171 (293)
                      ...........  .+++. .+++.++.|+.+       ..+..+|+.+..-......+                  ....
T Consensus       136 W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p------------------~~r~  196 (302)
T 2xn4_A          136 WFHVAPMNTRRSSVGVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMS------------------TRRS  196 (302)
T ss_dssp             EEEECCCSSCCBSCEEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCS------------------SCCB
T ss_pred             EeecCCCCCcccCceEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCc------------------cccc
Confidence            43322111111  12222 255666666532       34666776554321111000                  0000


Q ss_pred             CEEEEEECCCCCEEEEecCC-----CcEEEEeCCCCEEEEEeeccCC-CeeEEEEccCCCEEEEecCCC-----cEEEEE
Q 022716          172 GCYCIAIDPMGRYFAVGSAD-----SLVSLWDISEMLCVRTFTKLEW-PVRTISFSHTGDYIASASEDL-----FIDISN  240 (293)
Q Consensus       172 ~~~~~~~~~~~~~l~~gs~d-----~~i~iwd~~~~~~~~~~~~~~~-~v~~l~~sp~~~~l~s~s~d~-----~i~iw~  240 (293)
                      ...++.+  ++++++.|+.+     +.+.+||+.+.+-.. +..... .-..-+...+++.++.|+.++     .+.+||
T Consensus       197 ~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~-~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd  273 (302)
T 2xn4_A          197 GAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQ-VADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYN  273 (302)
T ss_dssp             SCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEE-ECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEE
T ss_pred             cccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEee-CCCCCCccccCeEEEECCEEEEECCcCCCcccccEEEEc
Confidence            1112222  56777777654     468899988764332 221111 111111223677777777553     377888


Q ss_pred             cCCCC
Q 022716          241 VHTGR  245 (293)
Q Consensus       241 ~~~~~  245 (293)
                      ..+.+
T Consensus       274 ~~~~~  278 (302)
T 2xn4_A          274 PTTDK  278 (302)
T ss_dssp             TTTTE
T ss_pred             CCCCe
Confidence            77654

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=95.08  E-value=1.4  Score=37.66  Aligned_cols=136  Identities=13%  Similarity=0.173  Sum_probs=84.5

Q ss_pred             CCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEe
Q 022716          129 DDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF  208 (293)
Q Consensus       129 d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~  208 (293)
                      +.++.+.|+.+.....++....+                       +.-++|..+.+|.-. ..++.+||++...+++.+
T Consensus        47 ~~~vvIiDl~~~~~~~rrpi~Ad-----------------------sAIMnP~~~iiALra-g~~lQiFnle~K~klks~  102 (494)
T 1bpo_A           47 QAQVVIIDMNDPSNPIRRPISAD-----------------------SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAH  102 (494)
T ss_dssp             CCEEEEEETTSTTSCEEEECCCS-----------------------EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEE
T ss_pred             CCeEEEEECCCCCcceecccccc-----------------------eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcce
Confidence            34788889887654443332211                       345678888777765 678999999999888876


Q ss_pred             eccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCC-CEEEEEecCC-----CcceeEECCCCCeEEEEEcCCCCCCCCc
Q 022716          209 TKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTG-RTVHQIPCRA-----AMNSVEWNPKYNLLAYAGDDKNKYQADE  282 (293)
Q Consensus       209 ~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~-~~~~~~~~~~-----~i~~~~~sp~~~~la~~~~d~~~~~~~~  282 (293)
                      .-. .+|.-=.|-.+. .|+.. .+..|+-|++... ...+.+..+.     .|.+-.-+++.+.++..|-...- -+-.
T Consensus       103 ~~~-e~VvfWkWis~~-~l~lV-T~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~-~~v~  178 (494)
T 1bpo_A          103 TMT-DDVTFWKWISLN-TVALV-TDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQ-NRVV  178 (494)
T ss_dssp             ECS-SCCCEEEEEETT-EEEEE-CSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEET-TEEE
T ss_pred             ecC-CCceEEEecCCC-eEEEE-cCCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccC-Cccc
Confidence            543 355555554333 23222 2456899998653 3344443322     34455668888888777642110 1335


Q ss_pred             ceEEEEeeec
Q 022716          283 GVFRIYGFEN  292 (293)
Q Consensus       283 ~~~~~~~~~~  292 (293)
                      |.|.+|++|+
T Consensus       179 G~mQLYS~er  188 (494)
T 1bpo_A          179 GAMQLYSVDR  188 (494)
T ss_dssp             EEEEEEESTT
T ss_pred             ceEEEeeccc
Confidence            9999999986

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=95.02  E-value=1.9  Score=38.87  Aligned_cols=199  Identities=8%  Similarity=-0.030  Sum_probs=114.2

Q ss_pred             ccEEEEEECCCCCeEEEEe-CCCcEEEeecCCCCCCceeEEEeeC------CcCCeeEEEEcCCCCCEEEEEeCCCeEEE
Q 022716           21 KKVHSVAWNCTGTKLASGS-VDQTARVWHIEPHGHGKVKDIELRG------HADSVDQLCWDPKHADLIATASGDKTVRL   93 (293)
Q Consensus        21 ~~v~~l~~s~~~~~l~s~~-~dg~v~iw~~~~~~~~~~~~~~~~~------h~~~i~~~~~~~~~~~~l~s~~~d~~i~v   93 (293)
                      ..+..++|++.+..|.-+. ..+.|+.++.+...  . ..+ +..      .......+++...+..++++-+..+.|.+
T Consensus       340 ~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~--~-~~v-~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v  415 (628)
T 4a0p_A          340 RNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQ--G-FTV-VVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINV  415 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS--C-EEE-EC--------CCCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             CCceEEEEecCCCeEEEEecCcceEEEEEcCCCC--c-eEE-EEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEE
Confidence            4688999998777665544 46778887765321  1 111 111      22346778887766667778778889999


Q ss_pred             EeCCCCeeeeeee--ecCceEEEEEcC-CCCEEEEEeCCC--eEEEEEccccceeeeecccceeeeeEEecCCCEEEEec
Q 022716           94 WDARSGKCSQQAE--LSGENINITYKP-DGTHIAVGNRDD--ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTT  168 (293)
Q Consensus        94 wd~~~~~~~~~~~--~~~~~~~~~~~~-~~~~l~~~~~d~--~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  168 (293)
                      .+++.. ....+.  .-..+..+++.| .|..+++-....  .|...++.....                    ..++..
T Consensus       416 ~~~~G~-~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~--------------------~~l~~~  474 (628)
T 4a0p_A          416 TRLDGR-SVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTER--------------------EVLFFS  474 (628)
T ss_dssp             EETTSC-EEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSC--------------------EEEECS
T ss_pred             EECCCC-eEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCc--------------------EEEEec
Confidence            988643 333222  234577899988 454444433222  344444433211                    111122


Q ss_pred             CCCCEEEEEECCCCCEEEEe-cCCCcEEEEeCCCCEEEEEee-ccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCE
Q 022716          169 GNAGCYCIAIDPMGRYFAVG-SADSLVSLWDISEMLCVRTFT-KLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRT  246 (293)
Q Consensus       169 ~~~~~~~~~~~~~~~~l~~g-s~d~~i~iwd~~~~~~~~~~~-~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~  246 (293)
                      .-.....|+++++...|..+ +..+.|..+++.... .+.+. ..-....+|+... +....+-.....|...|..+|+.
T Consensus       475 ~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~-r~~~~~~~~~~P~glav~~-~~ly~tD~~~~~i~~~~k~~G~~  552 (628)
T 4a0p_A          475 GLSKPIALALDSRLGKLFWADSDLRRIESSDLSGAN-RIVLEDSNILQPVGLTVFE-NWLYWIDKQQQMIEKIDMTGREG  552 (628)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECSSCSCEEEEEEET-TEEEEEETTTTEEEEEETTSSSC
T ss_pred             cCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCc-eEEEEcCCCCCcEEEEEEC-CEEEEEECCCCeEEEEECcCCCC
Confidence            22345678888875555444 456788888885432 23332 2223456777644 55556666677788888776653

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=94.92  E-value=2  Score=38.62  Aligned_cols=200  Identities=8%  Similarity=-0.052  Sum_probs=107.6

Q ss_pred             ccEEEEEECCCCCeEE-EEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCC
Q 022716           21 KKVHSVAWNCTGTKLA-SGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG   99 (293)
Q Consensus        21 ~~v~~l~~s~~~~~l~-s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~   99 (293)
                      ..+..++|++.+..|. +-...+.|+.++++...  . .. ...........+++.+.+++++++-+..+.|.+.+++..
T Consensus       349 ~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~--~-~~-v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~  424 (619)
T 3s94_A          349 RHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSG--S-QF-VVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGT  424 (619)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCS--C-EE-EECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             CccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCc--c-EE-EEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCC
Confidence            3577899998665555 44457888888876321  1 11 122222345677776655667777777889999988754


Q ss_pred             eeeeeee-ecCceEEEEEcCCCCEEEEEeC--CCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEE
Q 022716          100 KCSQQAE-LSGENINITYKPDGTHIAVGNR--DDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCI  176 (293)
Q Consensus       100 ~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~--d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  176 (293)
                      ....... .-..+..+++.|....|.....  ...|...++.....                    ..+....-.....|
T Consensus       425 ~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~--------------------~~l~~~~l~~P~Gl  484 (619)
T 3s94_A          425 MRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDR--------------------VVLVNTSLGWPNGL  484 (619)
T ss_dssp             SCEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC--------------------EEEECSSCSCEEEE
T ss_pred             eEEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCcc--------------------EEEEeCCCCCCeee
Confidence            3222211 1245778899886444433332  24555445433211                    11111222345678


Q ss_pred             EECCCCCEE-EEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCC
Q 022716          177 AIDPMGRYF-AVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGR  245 (293)
Q Consensus       177 ~~~~~~~~l-~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~  245 (293)
                      ++++++..| ++=+..+.|..+++........+...-.....|+...+ ....+-...+.|...+..++.
T Consensus       485 alD~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~l~~P~glav~~~-~ly~tD~~~~~I~~~~k~~g~  553 (619)
T 3s94_A          485 ALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDKIPHIFGFTLLGD-YVYWTDWQRRSIERVHKRSAE  553 (619)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEESSSCCCEEEEECCCCSSCCEEEETT-EEEEECTTSSCEEEEESSSCC
T ss_pred             EEcccCCEEEEEECCCCEEEEEecCCCceEEEeccCCCCcEEEEEECC-EEEEeecCCCeEEEEEcCCCc
Confidence            888755444 44455677888887543221111111122334555433 344454556667777776663

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=94.65  E-value=1.4  Score=35.61  Aligned_cols=146  Identities=10%  Similarity=0.029  Sum_probs=69.1

Q ss_pred             CeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEe--CC--CeEEEEEccccceeeeecccceeeeeEEecCCCEE
Q 022716           89 KTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGN--RD--DELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMF  164 (293)
Q Consensus        89 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~d--~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~  164 (293)
                      ..|+..++..++.....  ...  ...++++++.++-..  .+  ..|...++......+...                 
T Consensus        88 ~~Iy~i~~dg~~~~~l~--~~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~-----------------  146 (302)
T 3s25_A           88 NSLCRIKRNGHGSTVLD--PDP--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKN-----------------  146 (302)
T ss_dssp             EEEEEEETTSCCCEEEE--CSC--EEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEES-----------------
T ss_pred             CeEEEEeCCCCcceEee--cCC--ccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeC-----------------
Confidence            35677777665432211  111  236677888877665  23  345455554322211111                 


Q ss_pred             EEecCCCCEEEEEECCCCCEEEEecC-CCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCC--CcEEEEEc
Q 022716          165 FLTTGNAGCYCIAIDPMGRYFAVGSA-DSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASED--LFIDISNV  241 (293)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~l~~gs~-d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d--~~i~iw~~  241 (293)
                          +..    .+++|+++.|.-.+. ...|...++..+.....+.   .+. ...+.|++.+|+-...+  ..|..-++
T Consensus       147 ----~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~---~~~-~~~~~P~g~~iy~t~~~~~~~I~~~~l  214 (302)
T 3s25_A          147 ----HYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD---CNC-YKPVVLDDTNVYYMDVNRDNAIVHVNI  214 (302)
T ss_dssp             ----SCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC---SCE-EEEEEEETTEEEEEEGGGTTEEEEECS
T ss_pred             ----CCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC---CCc-cceeeecCCEEEEEEcCCCcEEEEEEC
Confidence                100    223455555543333 5667777776654332222   222 23456888887654432  34555555


Q ss_pred             CCCCEEEEEecCCCcceeEECCCCCeEEEE
Q 022716          242 HTGRTVHQIPCRAAMNSVEWNPKYNLLAYA  271 (293)
Q Consensus       242 ~~~~~~~~~~~~~~i~~~~~sp~~~~la~~  271 (293)
                      ..+. ...+. ...+  ..|+|++.+|..+
T Consensus       215 dG~~-~~~Lt-~~~~--~~~~~~g~~Iy~~  240 (302)
T 3s25_A          215 NNPN-PVVLT-EANI--EHYNVYGSLIFYQ  240 (302)
T ss_dssp             SSCC-CEECS-CSCE--EEEEEETTEEEEE
T ss_pred             CCCC-eEEEe-CCCc--ceEEECCCEEEEE
Confidence            4433 22221 1222  2356666666544

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=94.53  E-value=1.8  Score=37.30  Aligned_cols=107  Identities=11%  Similarity=0.078  Sum_probs=63.5

Q ss_pred             CCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEE--EEEeec------cCCCeeEEEEccC---CCEE-EEecC----
Q 022716          169 GNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLC--VRTFTK------LEWPVRTISFSHT---GDYI-ASASE----  232 (293)
Q Consensus       169 ~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~--~~~~~~------~~~~v~~l~~sp~---~~~l-~s~s~----  232 (293)
                      .-.....+++.|+|+++++-...+.|++++..++..  +..+..      ....+..|+|+|+   +.+| ++-+.    
T Consensus        25 ~l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~  104 (454)
T 1cru_A           25 NLNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK  104 (454)
T ss_dssp             CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred             CCCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence            344567899999999877765555788887654432  222221      1345678999995   4444 33322    


Q ss_pred             --------CCcEEEEEcCCC--C-----EE-EEEecC--CCcceeEECCCCCeEEEEEcCC
Q 022716          233 --------DLFIDISNVHTG--R-----TV-HQIPCR--AAMNSVEWNPKYNLLAYAGDDK  275 (293)
Q Consensus       233 --------d~~i~iw~~~~~--~-----~~-~~~~~~--~~i~~~~~sp~~~~la~~~~d~  275 (293)
                              ...|..++....  +     .+ ..++..  ..-..|.|.|+|.++++.++.+
T Consensus       105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd~~  165 (454)
T 1cru_A          105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGDQG  165 (454)
T ss_dssp             C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECCTT
T ss_pred             CCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECCCC
Confidence                    234555554322  1     11 123221  2357899999999888877654

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=94.43  E-value=1.6  Score=35.22  Aligned_cols=92  Identities=13%  Similarity=0.139  Sum_probs=48.1

Q ss_pred             CCCEEEEecC------CCcEEEEeCCCCEEEEEeeccCCC-eeEEEEccCCCEEEEecCCC-----cEEEEEcCCCCEEE
Q 022716          181 MGRYFAVGSA------DSLVSLWDISEMLCVRTFTKLEWP-VRTISFSHTGDYIASASEDL-----FIDISNVHTGRTVH  248 (293)
Q Consensus       181 ~~~~l~~gs~------d~~i~iwd~~~~~~~~~~~~~~~~-v~~l~~sp~~~~l~s~s~d~-----~i~iw~~~~~~~~~  248 (293)
                      +++.++.|+.      -+.+.+||..+.+-.. +.....+ ....+..-+++.++.|+.++     .+.++|..+.+-..
T Consensus       148 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~-~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~  226 (315)
T 4asc_A          148 MDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKE-LAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAP  226 (315)
T ss_dssp             TTEEEEECCBCTTSCBCCCEEEEETTTTEEEE-CCCCSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEE
T ss_pred             CCEEEEEeCCCCCCcccceEEEEeCCCCeEEE-CCCCCCchhceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEE
Confidence            5667777765      2468999988764322 2111111 11111223677777777543     47788887764322


Q ss_pred             E--EecCCC-cceeEECCCCCeEEEEEcCC
Q 022716          249 Q--IPCRAA-MNSVEWNPKYNLLAYAGDDK  275 (293)
Q Consensus       249 ~--~~~~~~-i~~~~~sp~~~~la~~~~d~  275 (293)
                      .  ++.... ...+.+  ++.+++.||.+.
T Consensus       227 ~~~~p~~r~~~~~~~~--~~~l~v~GG~~~  254 (315)
T 4asc_A          227 FEAFPQERSSLSLVSL--VGTLYAIGGFAT  254 (315)
T ss_dssp             ECCCSSCCBSCEEEEE--TTEEEEEEEEEE
T ss_pred             CCCCCCcccceeEEEE--CCEEEEECCccc
Confidence            1  221111 112223  567888888753

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=94.41  E-value=0.87  Score=35.06  Aligned_cols=146  Identities=12%  Similarity=0.070  Sum_probs=74.9

Q ss_pred             CCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeee------ee---eecCceEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 022716           67 DSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQ------QA---ELSGENINITYKPDGTHIAVGNRDDELTILDV  137 (293)
Q Consensus        67 ~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~------~~---~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~  137 (293)
                      ..+.+++|+|+ .. |+.. .++.+.-.+..+.....      .+   ..+ ....+.|.|+|.+.++  .|+.|.-++.
T Consensus        41 ~~~~~laf~P~-G~-LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~-~F~a~~fD~~G~LYav--~dG~iyr~~p  114 (236)
T 1tl2_A           41 SNFKFLFLSPG-GE-LYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWN-QFQFLFFDPNGYLYAV--SKDKLYKASP  114 (236)
T ss_dssp             TTCSEEEECTT-SC-EEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGG-GCSEEEECTTSCEEEE--ETTEEEEESC
T ss_pred             ccceeEEECCC-cc-EEEE-eCCeEEEECCCCCCcccccccccEecccccc-cceEEEECCCCCEEEe--CCCEEEEeCC
Confidence            46789999995 44 4555 66766655543321111      11   011 1357889999987777  5698877764


Q ss_pred             cccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCE------EEEEeecc
Q 022716          138 RKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEML------CVRTFTKL  211 (293)
Q Consensus       138 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~------~~~~~~~~  211 (293)
                      .+.....            |-..+ ..+-..+-..+..|.++|+|.+.++.  |+.++-.......      ....+..-
T Consensus       115 P~~~~~~------------Wl~~a-~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~  179 (236)
T 1tl2_A          115 PQSDTDN------------WIARA-TEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQG  179 (236)
T ss_dssp             CCSTTCC------------HHHHS-EEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESS
T ss_pred             CcCCCCc------------eeccc-cEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccC
Confidence            3211100            10000 00111122345688999999998888  6664332221110      00111111


Q ss_pred             C-CCeeEEEEccCCCEEEEecCCCc
Q 022716          212 E-WPVRTISFSHTGDYIASASEDLF  235 (293)
Q Consensus       212 ~-~~v~~l~~sp~~~~l~s~s~d~~  235 (293)
                      . ..-+.+.|.|++...+..  ++.
T Consensus       180 g~~~yr~l~f~~~G~l~~v~--~g~  202 (236)
T 1tl2_A          180 GWDTFKFLFFSSVGTLFGVQ--GGK  202 (236)
T ss_dssp             SGGGEEEEEECTTSCEEEEE--TTE
T ss_pred             CcceEEEEEECCCCcEEEEe--CCe
Confidence            1 123446688888766555  553

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=94.26  E-value=1.7  Score=34.83  Aligned_cols=172  Identities=10%  Similarity=0.049  Sum_probs=83.5

Q ss_pred             EEEEEeC--CCeEEEEeCCCCeeeeeeeecCc--eEEEEEcCCCCEEEEEeCC----CeEEEEEccccceeeeeccccee
Q 022716           81 LIATASG--DKTVRLWDARSGKCSQQAELSGE--NINITYKPDGTHIAVGNRD----DELTILDVRKFKPIHRRKFGYEV  152 (293)
Q Consensus        81 ~l~s~~~--d~~i~vwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d----~~i~l~d~~~~~~~~~~~~~~~~  152 (293)
                      +++.|+.  ...+.+||..+.+....-.....  ..+++ ..+++.++.|+.+    ..+..+|+.+..-......+.  
T Consensus        14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~-~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~--   90 (306)
T 3ii7_A           14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACV-FWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT--   90 (306)
T ss_dssp             EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEE-EETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS--
T ss_pred             EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEE-EECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc--
Confidence            4445554  35678889887764432211111  11222 2356666777654    556777776543221111100  


Q ss_pred             eeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCC------CcEEEEeCCCCEEEEE--eeccCCCeeEEEEccCC
Q 022716          153 NEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSAD------SLVSLWDISEMLCVRT--FTKLEWPVRTISFSHTG  224 (293)
Q Consensus       153 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d------~~i~iwd~~~~~~~~~--~~~~~~~v~~l~~sp~~  224 (293)
                                      ......++.+  +++.++.|+.+      ..+.+||..+..-...  +......-..+  ..++
T Consensus        91 ----------------~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~~~~  150 (306)
T 3ii7_A           91 ----------------PRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMV--EANG  150 (306)
T ss_dssp             ----------------CCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEE--EETT
T ss_pred             ----------------cccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEE--EECC
Confidence                            0001112222  56677777755      5689999887643322  11111111222  2366


Q ss_pred             CEEEEecC---------CCcEEEEEcCCCCEEEE--EecCCCcceeEECCCCCeEEEEEcCCC
Q 022716          225 DYIASASE---------DLFIDISNVHTGRTVHQ--IPCRAAMNSVEWNPKYNLLAYAGDDKN  276 (293)
Q Consensus       225 ~~l~s~s~---------d~~i~iw~~~~~~~~~~--~~~~~~i~~~~~sp~~~~la~~~~d~~  276 (293)
                      +..+.|+.         -..+.++|..+.+-...  ++....-.++... ++.+++.||.+..
T Consensus       151 ~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~  212 (306)
T 3ii7_A          151 LIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGL  212 (306)
T ss_dssp             EEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETT
T ss_pred             EEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCCCC
Confidence            77777763         34478899887643221  2211111122222 5678888886654

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=93.99  E-value=1.8  Score=39.54  Aligned_cols=225  Identities=10%  Similarity=0.059  Sum_probs=106.1

Q ss_pred             CCCCeEEEEeCC----CcEEEeecCCCCCCceeEEEee-----CCcC-CeeEEEEcCCCCCEEEEEeCCC------eEEE
Q 022716           30 CTGTKLASGSVD----QTARVWHIEPHGHGKVKDIELR-----GHAD-SVDQLCWDPKHADLIATASGDK------TVRL   93 (293)
Q Consensus        30 ~~~~~l~s~~~d----g~v~iw~~~~~~~~~~~~~~~~-----~h~~-~i~~~~~~~~~~~~l~s~~~d~------~i~v   93 (293)
                      .++..++.||.+    ..+.+||...+....   +...     .... .-.+++..+.++.+++.||.++      .+.+
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~---~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~  472 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDM---KNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWI  472 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEE---EECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEE
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEE---eccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEE
Confidence            456777888764    457777776432211   1101     0111 1112222221345666776532      4678


Q ss_pred             EeCCCCeeeeeeeecCc--eEEEEEcCCCCEEEEEeCCC--eEEEEEccccceeeeecccceeeeeEEecCCCEEEEecC
Q 022716           94 WDARSGKCSQQAELSGE--NINITYKPDGTHIAVGNRDD--ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG  169 (293)
Q Consensus        94 wd~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d~--~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  169 (293)
                      ||..+.+....-.....  ..+++...+++.++.|+.++  .+.+||+.+..-......+..       |        ..
T Consensus       473 yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~-------p--------~~  537 (695)
T 2zwa_A          473 FDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEF-------F--------QN  537 (695)
T ss_dssp             EETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGG-------G--------GS
T ss_pred             EeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCC-------C--------Cc
Confidence            88887654332211111  11233334788888887654  577888766442211110000       0        00


Q ss_pred             CCCEEEEEECCC-CCEEEEecC--C-----CcEEEEeCCCCE--------EEEEee-ccCCCeeEEEEccCCCEEEEecC
Q 022716          170 NAGCYCIAIDPM-GRYFAVGSA--D-----SLVSLWDISEML--------CVRTFT-KLEWPVRTISFSHTGDYIASASE  232 (293)
Q Consensus       170 ~~~~~~~~~~~~-~~~l~~gs~--d-----~~i~iwd~~~~~--------~~~~~~-~~~~~v~~l~~sp~~~~l~s~s~  232 (293)
                      .....++.+... ++.++.|+.  +     +.+..||+.+..        .+.... .....- ++....+++.++.|+.
T Consensus       538 r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~-~~~~~~~~~iyv~GG~  616 (695)
T 2zwa_A          538 SLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGS-QIKYITPRKLLIVGGT  616 (695)
T ss_dssp             CCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSC-EEEEEETTEEEEECCB
T ss_pred             ccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccc-eEEEeCCCEEEEECCc
Confidence            001112333444 667777765  2     458899987654        222211 111111 2223333777777774


Q ss_pred             --------CCcEEEEEcCCCCEEEEEecCCCc----------ceeEECCCCCeEEEEEcC
Q 022716          233 --------DLFIDISNVHTGRTVHQIPCRAAM----------NSVEWNPKYNLLAYAGDD  274 (293)
Q Consensus       233 --------d~~i~iw~~~~~~~~~~~~~~~~i----------~~~~~sp~~~~la~~~~d  274 (293)
                              ...+.++|..+.+-. .+......          .++..-+++.+++.||..
T Consensus       617 ~~~~~~~~~~~v~~yd~~t~~W~-~~~~p~~~~~~~~p~~~gh~~~~~~~g~i~v~GGg~  675 (695)
T 2zwa_A          617 SPSGLFDRTNSIISLDPLSETLT-SIPISRRIWEDHSLMLAGFSLVSTSMGTIHIIGGGA  675 (695)
T ss_dssp             CSSCCCCTTTSEEEEETTTTEEE-ECCCCHHHHHHSCCCCSSCEEECC---CEEEECCEE
T ss_pred             cCCCCCCCCCeEEEEECCCCeEE-EeeccccccCCCCccceeeeEEEeCCCEEEEEeCCc
Confidence                    345889998876533 22211111          223334556788888753

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=93.82  E-value=0.52  Score=41.54  Aligned_cols=137  Identities=14%  Similarity=0.198  Sum_probs=80.3

Q ss_pred             EEEEeCCC----C-eeeeeeeecCceEEEEEcCCCCEEEEEeC-CCeEEEEEccccceeeeecccceeeeeEEecCCCEE
Q 022716           91 VRLWDARS----G-KCSQQAELSGENINITYKPDGTHIAVGNR-DDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMF  164 (293)
Q Consensus        91 i~vwd~~~----~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~  164 (293)
                      +.+.|.+.    + .....+.....+..+..+|||+++++++. +.++.++|.++.......+.        ..+.....
T Consensus       300 v~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~--------~~~~~~~~  371 (638)
T 3sbq_A          300 TPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKL--------ADPRDVIV  371 (638)
T ss_dssp             CCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCC--------SCGGGGEE
T ss_pred             eeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccc--------cCcccceE
Confidence            55666544    1 22333445556667899999999988874 78999999875322110000        00000000


Q ss_pred             EEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCC----------EEEEEeeccCCCeeEEEE------ccCCCEEE
Q 022716          165 FLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM----------LCVRTFTKLEWPVRTISF------SHTGDYIA  228 (293)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~----------~~~~~~~~~~~~v~~l~~------sp~~~~l~  228 (293)
                      .-....-...-.+|+++|....+---|..|.-|++...          ..+..+.-|- .+-.+.-      .|+|++|+
T Consensus       372 ae~e~GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~Y-qpGH~~~~~get~~~dGk~lv  450 (638)
T 3sbq_A          372 GEPELGLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHY-QPGHLHASLCETNEADGKWLV  450 (638)
T ss_dssp             ECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSS-CEEEEEETTTTSTTCCSCEEE
T ss_pred             eeccCCCcccEEEECCCCceEeeeeecceEEEEeccHHHHHhcCccCCeeeecccccc-CCcccccCCCccCCCCccEEE
Confidence            00011223456788899977778888999999998642          2333443332 3333333      57899998


Q ss_pred             Ee---cCCCcE
Q 022716          229 SA---SEDLFI  236 (293)
Q Consensus       229 s~---s~d~~i  236 (293)
                      +.   |.|.++
T Consensus       451 ~lnK~skdrfl  461 (638)
T 3sbq_A          451 ALSKFSKDRFL  461 (638)
T ss_dssp             EEESCCTTSSC
T ss_pred             EecccccccCc
Confidence            87   567776

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=93.69  E-value=2.2  Score=34.22  Aligned_cols=143  Identities=13%  Similarity=0.125  Sum_probs=69.7

Q ss_pred             CCEEEEEeCC-----CeEEEEeCCCCeeeeeeeecCc--eEEEEEcCCCCEEEEEeCC-----CeEEEEEccccceeeee
Q 022716           79 ADLIATASGD-----KTVRLWDARSGKCSQQAELSGE--NINITYKPDGTHIAVGNRD-----DELTILDVRKFKPIHRR  146 (293)
Q Consensus        79 ~~~l~s~~~d-----~~i~vwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d-----~~i~l~d~~~~~~~~~~  146 (293)
                      ..+++.|+.+     ..+.+||..+.+..........  ..+++. -+++.++.|+.+     ..+..+|+.+..-....
T Consensus       122 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~  200 (308)
T 1zgk_A          122 GHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAV-LNRLLYAVGGFDGTNRLNSAECYYPERNEWRMIT  200 (308)
T ss_dssp             TEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCCEEEEETTTTEEEECC
T ss_pred             CEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEE-ECCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCC
Confidence            3466666543     3577888877654332221111  112222 256666776654     34666776554321111


Q ss_pred             cccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCC-----CcEEEEeCCCCEEEEEeeccC---CCeeEE
Q 022716          147 KFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSAD-----SLVSLWDISEMLCVRTFTKLE---WPVRTI  218 (293)
Q Consensus       147 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d-----~~i~iwd~~~~~~~~~~~~~~---~~v~~l  218 (293)
                      ..+                  .......++.+  ++++++.|+.+     ..+.+||+.+.+-.. +....   ..-..+
T Consensus       201 ~~p------------------~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~-~~~~p~~r~~~~~~  259 (308)
T 1zgk_A          201 AMN------------------TIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTF-VAPMKHRRSALGIT  259 (308)
T ss_dssp             CCS------------------SCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEE-CCCCSSCCBSCEEE
T ss_pred             CCC------------------CccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEE-CCCCCCCccceEEE
Confidence            000                  00011112222  56777777654     568999988764332 21111   111222


Q ss_pred             EEccCCCEEEEecCC-----CcEEEEEcCCCC
Q 022716          219 SFSHTGDYIASASED-----LFIDISNVHTGR  245 (293)
Q Consensus       219 ~~sp~~~~l~s~s~d-----~~i~iw~~~~~~  245 (293)
                      .  -+++.++.|+.+     ..+.++|..+.+
T Consensus       260 ~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~  289 (308)
T 1zgk_A          260 V--HQGRIYVLGGYDGHTFLDSVECYDPDTDT  289 (308)
T ss_dssp             E--ETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             E--ECCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence            2  367777777754     346677776653

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=93.65  E-value=2.2  Score=35.07  Aligned_cols=54  Identities=4%  Similarity=-0.122  Sum_probs=27.8

Q ss_pred             cEEEEeCCC--CEEEEEeeccCCCeeEEEEccCCCEEEEecCCC------cEEEEEcCCCCEEE
Q 022716          193 LVSLWDISE--MLCVRTFTKLEWPVRTISFSHTGDYIASASEDL------FIDISNVHTGRTVH  248 (293)
Q Consensus       193 ~i~iwd~~~--~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~------~i~iw~~~~~~~~~  248 (293)
                      .+.+||+.+  ...+..+......-.+  ...+++.++.|+.+.      .+.+.++.+++.+.
T Consensus       286 ~~~~yd~~~~~W~~~~~~p~~r~~~~~--~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~  347 (357)
T 2uvk_A          286 STDIHLWHNGKWDKSGELSQGRAYGVS--LPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTV  347 (357)
T ss_dssp             CCEEEECC---CEEEEECSSCCBSSEE--EEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEE
T ss_pred             eEEEEecCCCceeeCCCCCCCccccee--EEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEe
Confidence            577898865  3444333322222222  334777888887543      23445776666543

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=93.12  E-value=0.95  Score=37.35  Aligned_cols=117  Identities=9%  Similarity=0.016  Sum_probs=67.9

Q ss_pred             CEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEe-cCCCcEEEEeC
Q 022716          121 THIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVG-SADSLVSLWDI  199 (293)
Q Consensus       121 ~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g-s~d~~i~iwd~  199 (293)
                      ..+++++.||.+.-+|.++++..-....+.         ....+.......       ..++..++.. +.||.|..++.
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~---------~~p~~~~~~~~~-------~~~~~~~vv~p~~dG~l~a~~~   74 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPEN---------FQPLIEIQEPSR-------LETYETLIIEPFGDGNIYYFNA   74 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGG---------SCCSEECCCSCT-------TTSSEEEEECCSTTTEEEEEET
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCc---------cCCcEEecCCcc-------ccCCcEEEEEECCCCEEEEEEC
Confidence            367888999999999987766443322210         000000000000       0123334443 68999999999


Q ss_pred             CCCEEEEEeecc----CCCeeE----EEE----ccCCCEEEEecCCCcEEEEEcCCCCEEEEEecC
Q 022716          200 SEMLCVRTFTKL----EWPVRT----ISF----SHTGDYIASASEDLFIDISNVHTGRTVHQIPCR  253 (293)
Q Consensus       200 ~~~~~~~~~~~~----~~~v~~----l~~----sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~  253 (293)
                      .++...-.+...    ..|+..    +..    +..+..+++|+.++.+.-.|..+|+.+..+...
T Consensus        75 ~~G~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~  140 (339)
T 2be1_A           75 HQGLQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG  140 (339)
T ss_dssp             TTEEEEEEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred             CCCcEEeeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence            887544333211    112221    000    014568899999999999999999999887654

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=93.04  E-value=5.2  Score=36.53  Aligned_cols=194  Identities=12%  Similarity=0.116  Sum_probs=96.2

Q ss_pred             CCEEEEEeCC----CeEEEEeCCCCeeeeee-e-----ecCc--eEEEEEcC-CCCEEEEEeCCC------eEEEEEccc
Q 022716           79 ADLIATASGD----KTVRLWDARSGKCSQQA-E-----LSGE--NINITYKP-DGTHIAVGNRDD------ELTILDVRK  139 (293)
Q Consensus        79 ~~~l~s~~~d----~~i~vwd~~~~~~~~~~-~-----~~~~--~~~~~~~~-~~~~l~~~~~d~------~i~l~d~~~  139 (293)
                      ..+++.||.+    ..+.+||..+.+..... .     ....  ..+++..+ +++.++.|+.++      .+.++|+.+
T Consensus       398 ~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t  477 (695)
T 2zwa_A          398 NDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKT  477 (695)
T ss_dssp             SCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTT
T ss_pred             CEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCC
Confidence            4567777653    35778888776543322 1     1111  11233333 677777777432      355666655


Q ss_pred             cceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCC--cEEEEeCCCCEEEEEe-----eccC
Q 022716          140 FKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADS--LVSLWDISEMLCVRTF-----TKLE  212 (293)
Q Consensus       140 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~--~i~iwd~~~~~~~~~~-----~~~~  212 (293)
                      ..               |..-..+   ....... +.+.-.++..++.|+.++  .+.+||..+..-...-     ....
T Consensus       478 ~~---------------W~~~~~~---p~~R~~h-~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r  538 (695)
T 2zwa_A          478 RE---------------WSMIKSL---SHTRFRH-SACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNS  538 (695)
T ss_dssp             TE---------------EEECCCC---SBCCBSC-EEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSC
T ss_pred             Cc---------------EEECCCC---CCCcccc-eEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcc
Confidence            32               2111100   0000011 222224778888887654  6999999876533221     1112


Q ss_pred             CCeeEEEEccC-CCEEEEecC--C-----CcEEEEEcCCCCE-----EEEEec---CCCc-ceeEECCCCCeEEEEEcCC
Q 022716          213 WPVRTISFSHT-GDYIASASE--D-----LFIDISNVHTGRT-----VHQIPC---RAAM-NSVEWNPKYNLLAYAGDDK  275 (293)
Q Consensus       213 ~~v~~l~~sp~-~~~l~s~s~--d-----~~i~iw~~~~~~~-----~~~~~~---~~~i-~~~~~sp~~~~la~~~~d~  275 (293)
                      ..-.++.+..+ ++.++.|+.  +     ..+.+||+.+..-     ...+..   .... .++....++.+++.||.+.
T Consensus       539 ~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~  618 (695)
T 2zwa_A          539 LVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSP  618 (695)
T ss_dssp             CBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCS
T ss_pred             cceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccC
Confidence            22233555555 667777765  2     3478899887761     222211   1111 1222223377888888654


Q ss_pred             CCCCCCcceEEEEeee
Q 022716          276 NKYQADEGVFRIYGFE  291 (293)
Q Consensus       276 ~~~~~~~~~~~~~~~~  291 (293)
                      .........+-+|+.+
T Consensus       619 ~~~~~~~~~v~~yd~~  634 (695)
T 2zwa_A          619 SGLFDRTNSIISLDPL  634 (695)
T ss_dssp             SCCCCTTTSEEEEETT
T ss_pred             CCCCCCCCeEEEEECC
Confidence            3321223445566554

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=91.77  E-value=10  Score=36.94  Aligned_cols=224  Identities=13%  Similarity=0.141  Sum_probs=114.8

Q ss_pred             cEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCC-----CCEEEEEeC-CCeEEEEe
Q 022716           22 KVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKH-----ADLIATASG-DKTVRLWD   95 (293)
Q Consensus        22 ~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~-----~~~l~s~~~-d~~i~vwd   95 (293)
                      .|...+.+  +.+++.++ ++.+.+++++..   ......-..-...|.++++.|..     +.+++.|.+ |+++++++
T Consensus       515 ~I~~As~n--~~~vvva~-g~~l~~fel~~~---~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~s  588 (1158)
T 3ei3_A          515 NISVASCN--SSQVVVAV-GRALYYLQIHPQ---ELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILK  588 (1158)
T ss_dssp             CCCEEEEC--SSEEEEEE-TTEEEEEEEETT---EEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEE
T ss_pred             EEEEEEeC--CCEEEEEE-CCEEEEEEeeCC---ceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEE
Confidence            35554443  34666664 577777777642   11211111224568999886532     367888886 99999999


Q ss_pred             CCCCeeeeeeeecC--ceEEEEEc--CCCCEEEEEeCCCeEEEEEcc--ccceeee--ecccceeeeeEEecCCCEEEEe
Q 022716           96 ARSGKCSQQAELSG--ENINITYK--PDGTHIAVGNRDDELTILDVR--KFKPIHR--RKFGYEVNEIAWNMTGEMFFLT  167 (293)
Q Consensus        96 ~~~~~~~~~~~~~~--~~~~~~~~--~~~~~l~~~~~d~~i~l~d~~--~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~  167 (293)
                      +..-+.........  .+.++.+.  ....+|.+|..||.+.-+.+.  ++.....  ...|.                 
T Consensus       589 L~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~-----------------  651 (1158)
T 3ei3_A          589 LPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGT-----------------  651 (1158)
T ss_dssp             TTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECCS-----------------
T ss_pred             CCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcCC-----------------
Confidence            98766555444433  34444332  234578899999987665543  2222111  11111                 


Q ss_pred             cCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeE-EEEccCC--CEEEEecCCCcEEEEEcCCC
Q 022716          168 TGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRT-ISFSHTG--DYIASASEDLFIDISNVHTG  244 (293)
Q Consensus       168 ~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~-l~~sp~~--~~l~s~s~d~~i~iw~~~~~  244 (293)
                         .++.-..+...+..-+-+..+.-..+|-.+.......+ .. .++.. ..|+...  .-++.. .++.++|..+.+.
T Consensus       652 ---~pv~L~~~~~~~~~~V~a~s~rp~liy~~~~~l~~s~l-~~-~~v~~~~~F~se~~~~g~v~~-~~~~LrI~~i~~~  725 (1158)
T 3ei3_A          652 ---QPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNV-NL-KEVNYMCPLNSDGYPDSLALA-NNSTLTIGTIDEI  725 (1158)
T ss_dssp             ---SCCEEEEEESSSCEEEEEESSSCEEEEESSSSEEEEEB-SS-SCCCEEEEECCSSSTTEEEEE-CSSCEEEEEECCS
T ss_pred             ---CceEEEEEeeCCceeEEEECCCCEEEEEcCCceEEecc-Ch-HHhceEeccCcccCCCcEEEE-cCCceEEEEeccc
Confidence               01111111111111111112233333333322111111 11 23433 3354321  223333 3455888877554


Q ss_pred             C--EEEEEecCCCcceeEECCCCCeEEEEEcC
Q 022716          245 R--TVHQIPCRAAMNSVEWNPKYNLLAYAGDD  274 (293)
Q Consensus       245 ~--~~~~~~~~~~i~~~~~sp~~~~la~~~~d  274 (293)
                      .  .+++++.+..++.++++|..+.++.+..+
T Consensus       726 ~~~~~~~ipL~~Tprri~y~~~~~~~~v~~~~  757 (1158)
T 3ei3_A          726 QKLHIRTVPLYESPRKICYQEVSQCFGVLSSR  757 (1158)
T ss_dssp             SSEEEEEEECSSEEEEEEEEGGGTEEEEEEEE
T ss_pred             CCeeEEEEeCCCCceEEEEcCCCCEEEEEEEe
Confidence            3  35667888889999999988877666543

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=91.29  E-value=3.8  Score=35.38  Aligned_cols=105  Identities=13%  Similarity=0.072  Sum_probs=59.9

Q ss_pred             CEEEEEECCCCC-EEEEecCCCcEEEEeCCCCE---EEEEeec---------cCCCeeEEEEccC----CCEEEEec--C
Q 022716          172 GCYCIAIDPMGR-YFAVGSADSLVSLWDISEML---CVRTFTK---------LEWPVRTISFSHT----GDYIASAS--E  232 (293)
Q Consensus       172 ~~~~~~~~~~~~-~l~~gs~d~~i~iwd~~~~~---~~~~~~~---------~~~~v~~l~~sp~----~~~l~s~s--~  232 (293)
                      ....+++.|++. .|+++...|.|++++.....   .+..+..         .+.....|+|+|+    +.+.++-+  .
T Consensus        15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~   94 (463)
T 2wg3_C           15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ   94 (463)
T ss_dssp             SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred             CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence            456789999986 45555678999999753221   1111111         1346788999997    33333322  1


Q ss_pred             C----------CcEEEEEcCC----------CCEEEEEecC---CCcceeEECCCCCeEEEEEcCCC
Q 022716          233 D----------LFIDISNVHT----------GRTVHQIPCR---AAMNSVEWNPKYNLLAYAGDDKN  276 (293)
Q Consensus       233 d----------~~i~iw~~~~----------~~~~~~~~~~---~~i~~~~~sp~~~~la~~~~d~~  276 (293)
                      +          ..|.-|....          .+.+..+...   -.-..|+|.|||.++++.|+..+
T Consensus        95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~~  161 (463)
T 2wg3_C           95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMI  161 (463)
T ss_dssp             CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTTC
T ss_pred             CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCCC
Confidence            1          1333344432          1233333311   12467999999999888887654

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=90.60  E-value=5.8  Score=31.99  Aligned_cols=202  Identities=7%  Similarity=-0.033  Sum_probs=98.8

Q ss_pred             EEECCCCCeEEEEeCC--------------CcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEE---eCC
Q 022716           26 VAWNCTGTKLASGSVD--------------QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATA---SGD   88 (293)
Q Consensus        26 l~~s~~~~~l~s~~~d--------------g~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~---~~d   88 (293)
                      --++++|++|.-....              ..|+..+++..  ...   .+..  ....  .+++.+..+.++-   ..+
T Consensus        58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~--~~~---~l~~--~~~~--~~s~~g~~Iy~~~~~~~~~  128 (302)
T 3s25_A           58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGH--GST---VLDP--DPCI--YASLIGNYIYYLHYDTQTA  128 (302)
T ss_dssp             EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSC--CCE---EEEC--SCEE--EEEEETTEEEEEEESSSSC
T ss_pred             eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCC--cce---Eeec--CCcc--EEEEeCCEEEEEeecCCCC
Confidence            3457899998766543              34555555532  111   1211  1222  3455544444443   234


Q ss_pred             CeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeC-CCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEe
Q 022716           89 KTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNR-DDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLT  167 (293)
Q Consensus        89 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  167 (293)
                      ..|...++...........  ..  .+++|+++.|.-.+. ..+|...++..........                    
T Consensus       129 ~~Iy~~~~dGs~~~~lt~~--~~--~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~--------------------  184 (302)
T 3s25_A          129 TSLYRIRIDGEEKKKIKNH--YL--FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD--------------------  184 (302)
T ss_dssp             EEEEEEETTSCCCEEEESS--CC--CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC--------------------
T ss_pred             ceEEEEECCCCCeEEEeCC--Cc--eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC--------------------
Confidence            5566666654332222111  11  345778887776554 5677777765543221110                    


Q ss_pred             cCCCCEEEEEECCCCCEEEEecCC--CcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEec--CCCcEEEEEcCC
Q 022716          168 TGNAGCYCIAIDPMGRYFAVGSAD--SLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASAS--EDLFIDISNVHT  243 (293)
Q Consensus       168 ~~~~~~~~~~~~~~~~~l~~gs~d--~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s--~d~~i~iw~~~~  243 (293)
                         ... ...++|++.+|+-...+  ..|..-++.... ...+..  ..+  ..|+|++.+|.-++  ....|..-++..
T Consensus       185 ---~~~-~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~-~~~Lt~--~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG  255 (302)
T 3s25_A          185 ---CNC-YKPVVLDDTNVYYMDVNRDNAIVHVNINNPN-PVVLTE--ANI--EHYNVYGSLIFYQRGGDNPALCVVKNDG  255 (302)
T ss_dssp             ---SCE-EEEEEEETTEEEEEEGGGTTEEEEECSSSCC-CEECSC--SCE--EEEEEETTEEEEEECSSSCEEEEEETTS
T ss_pred             ---CCc-cceeeecCCEEEEEEcCCCcEEEEEECCCCC-eEEEeC--CCc--ceEEECCCEEEEEECCCCcEEEEEECCC
Confidence               011 12244777766554433  245555555443 223322  233  33788898886553  345566666643


Q ss_pred             CCEEEEEecCCCcceeEECCCCCeEEEEEc
Q 022716          244 GRTVHQIPCRAAMNSVEWNPKYNLLAYAGD  273 (293)
Q Consensus       244 ~~~~~~~~~~~~i~~~~~sp~~~~la~~~~  273 (293)
                       ...+.+... .+.  .+++.+.+|.....
T Consensus       256 -~~r~~l~~~-~~~--~i~i~~d~Iy~td~  281 (302)
T 3s25_A          256 -TGFKELAKG-EFC--NINVTSQYVYFTDF  281 (302)
T ss_dssp             -CCCEEEEES-CEE--EEEECSSEEEEEET
T ss_pred             -CccEEeeCC-ccc--eEEEeCCEEEEEEC
Confidence             322333222 122  45667777777763

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=90.44  E-value=9  Score=33.96  Aligned_cols=98  Identities=12%  Similarity=0.079  Sum_probs=63.9

Q ss_pred             EEEECCCCCEEEEec-CCCcEEEEeCCCCEE-------------EEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEE
Q 022716          175 CIAIDPMGRYFAVGS-ADSLVSLWDISEMLC-------------VRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISN  240 (293)
Q Consensus       175 ~~~~~~~~~~l~~gs-~d~~i~iwd~~~~~~-------------~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~  240 (293)
                      -+.++|+|+++++++ .+.++.++|.++...             ..+. .........+|.++|....|--.|..|-.|+
T Consensus       327 Gv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~-e~GlGPlHt~Fd~~G~aYTtlfidSqvvkWn  405 (638)
T 3sbq_A          327 GCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEP-ELGLGPLHTTFDGRGNAYTTLFIDSQVVKWN  405 (638)
T ss_dssp             CEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECC-BCCSCEEEEEECSSSEEEEEETTTTEEEEEE
T ss_pred             ceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeec-cCCCcccEEEECCCCceEeeeeecceEEEEe
Confidence            467899999876665 488999999874211             1111 2334578889999996556667999999999


Q ss_pred             cCCC----------CEEEEEecCCCcceeE------ECCCCCeEEEEEc
Q 022716          241 VHTG----------RTVHQIPCRAAMNSVE------WNPKYNLLAYAGD  273 (293)
Q Consensus       241 ~~~~----------~~~~~~~~~~~i~~~~------~sp~~~~la~~~~  273 (293)
                      +...          ..+.+++-+-.+--+.      -.|+|++|++...
T Consensus       406 i~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK  454 (638)
T 3sbq_A          406 MEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSK  454 (638)
T ss_dssp             HHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEES
T ss_pred             ccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEecc
Confidence            8652          2333443222222221      2588999988874

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=88.91  E-value=8.4  Score=31.43  Aligned_cols=94  Identities=12%  Similarity=0.088  Sum_probs=44.9

Q ss_pred             CCCEEEEecC------CCcEEEEeC--CCCEEE--EEeeccCCCeeEEEEccCCCEEEEecCC-----------------
Q 022716          181 MGRYFAVGSA------DSLVSLWDI--SEMLCV--RTFTKLEWPVRTISFSHTGDYIASASED-----------------  233 (293)
Q Consensus       181 ~~~~l~~gs~------d~~i~iwd~--~~~~~~--~~~~~~~~~v~~l~~sp~~~~l~s~s~d-----------------  233 (293)
                      ++++++.|+.      ...+..||+  .+..-.  ..+..........+...+++.++.|+.+                 
T Consensus       200 ~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~  279 (357)
T 2uvk_A          200 GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHE  279 (357)
T ss_dssp             TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTT
T ss_pred             CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEEECCEEEEEcCccccCCcccccccceeccc
Confidence            4566666653      345777876  433222  1111111111212233467777777732                 


Q ss_pred             -----CcEEEEEcCCCC--EEEEEecCCCcceeEECCCCCeEEEEEcCC
Q 022716          234 -----LFIDISNVHTGR--TVHQIPCRAAMNSVEWNPKYNLLAYAGDDK  275 (293)
Q Consensus       234 -----~~i~iw~~~~~~--~~~~~~~~~~i~~~~~sp~~~~la~~~~d~  275 (293)
                           ..+.++|+.+.+  .+..++... ....+...++.+++.||.+.
T Consensus       280 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r-~~~~~~~~~~~i~v~GG~~~  327 (357)
T 2uvk_A          280 GLKKSYSTDIHLWHNGKWDKSGELSQGR-AYGVSLPWNNSLLIIGGETA  327 (357)
T ss_dssp             TCCCEECCEEEECC---CEEEEECSSCC-BSSEEEEETTEEEEEEEECG
T ss_pred             cccceeeEEEEecCCCceeeCCCCCCCc-ccceeEEeCCEEEEEeeeCC
Confidence                 246788987654  233333221 11222334678999999764

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=88.26  E-value=8.6  Score=30.76  Aligned_cols=170  Identities=11%  Similarity=0.050  Sum_probs=82.3

Q ss_pred             EEEEEeCCCeEEEEeCCCCeeeeeeeecC---ceEEEEEcCCCCEEEEEeC----C-------CeEEEEEccccceeeee
Q 022716           81 LIATASGDKTVRLWDARSGKCSQQAELSG---ENINITYKPDGTHIAVGNR----D-------DELTILDVRKFKPIHRR  146 (293)
Q Consensus        81 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~----d-------~~i~l~d~~~~~~~~~~  146 (293)
                      +++.|+  ..+..||..+.+... .....   .........+++.++.|+.    +       ..+..+|+.+.+-....
T Consensus         7 l~~~GG--~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~   83 (315)
T 4asc_A            7 IFMISE--EGAVAYDPAANECYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMP   83 (315)
T ss_dssp             EEEEET--TEEEEEETTTTEEEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECC
T ss_pred             EEEEcC--CceEEECCCCCeEec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECC
Confidence            344455  568889998877543 22221   1112233457777777773    1       12556676554321111


Q ss_pred             cccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCC--------CcEEEEeCCCCEEEEEeeccCC-CeeE
Q 022716          147 KFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSAD--------SLVSLWDISEMLCVRTFTKLEW-PVRT  217 (293)
Q Consensus       147 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d--------~~i~iwd~~~~~~~~~~~~~~~-~v~~  217 (293)
                      ..+..           +       ....++.+  ++..++.|+.+        +.+.+||..+.+-.. +..... .-..
T Consensus        84 ~~p~~-----------r-------~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~  142 (315)
T 4asc_A           84 PLPSP-----------R-------CLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGE-SDPLPYVVYGH  142 (315)
T ss_dssp             CBSSC-----------E-------ESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEE-CCCCSSCCBSC
T ss_pred             CCCcc-----------h-------hceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeE-CCCCCCcccce
Confidence            11000           0       00011122  55666666632        468899988764322 211111 1111


Q ss_pred             EEEccCCCEEEEecC-C-----CcEEEEEcCCCCEEE--EEecCCC-cceeEECCCCCeEEEEEcCCC
Q 022716          218 ISFSHTGDYIASASE-D-----LFIDISNVHTGRTVH--QIPCRAA-MNSVEWNPKYNLLAYAGDDKN  276 (293)
Q Consensus       218 l~~sp~~~~l~s~s~-d-----~~i~iw~~~~~~~~~--~~~~~~~-i~~~~~sp~~~~la~~~~d~~  276 (293)
                      .+...+++.++.|+. +     ..+.++|..+.+-..  .++.... -..+.+  ++.+++.||.++.
T Consensus       143 ~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~  208 (315)
T 4asc_A          143 TVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDT  208 (315)
T ss_dssp             EEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSS
T ss_pred             eEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCC
Confidence            122246677777775 2     457888887754222  1221111 112223  6678889987654

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=86.46  E-value=11  Score=30.13  Aligned_cols=93  Identities=12%  Similarity=0.093  Sum_probs=47.8

Q ss_pred             CCCCEEEEecC------CCcEEEEeCCCCEEEEE--eeccCCCeeEEEEccCCCEEEEecCC-----CcEEEEEcCCCCE
Q 022716          180 PMGRYFAVGSA------DSLVSLWDISEMLCVRT--FTKLEWPVRTISFSHTGDYIASASED-----LFIDISNVHTGRT  246 (293)
Q Consensus       180 ~~~~~l~~gs~------d~~i~iwd~~~~~~~~~--~~~~~~~v~~l~~sp~~~~l~s~s~d-----~~i~iw~~~~~~~  246 (293)
                      .++++++.|+.      -+.+.+||+.+.+-...  +......-.++.  -+++.++.|+.+     ..+.++|..+.+-
T Consensus       157 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W  234 (318)
T 2woz_A          157 HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI--HKGKIVIAGGVTEDGLSASVEAFDLKTNKW  234 (318)
T ss_dssp             ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEEEEEETTEEEEEEEEEETTTCCE
T ss_pred             ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEE--ECCEEEEEcCcCCCCccceEEEEECCCCeE
Confidence            35667777764      24589999887643321  111111112222  366777777643     3467888877653


Q ss_pred             EE--EEecCCCcceeEECCCCCeEEEEEcCC
Q 022716          247 VH--QIPCRAAMNSVEWNPKYNLLAYAGDDK  275 (293)
Q Consensus       247 ~~--~~~~~~~i~~~~~sp~~~~la~~~~d~  275 (293)
                      ..  .++....-.++. .-++.+++.||.+.
T Consensus       235 ~~~~~~p~~r~~~~~~-~~~~~i~v~GG~~~  264 (318)
T 2woz_A          235 EVMTEFPQERSSISLV-SLAGSLYAIGGFAM  264 (318)
T ss_dssp             EECCCCSSCCBSCEEE-EETTEEEEECCBCC
T ss_pred             EECCCCCCcccceEEE-EECCEEEEECCeec
Confidence            22  122111111222 22567888888654

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=86.44  E-value=8.9  Score=38.12  Aligned_cols=111  Identities=10%  Similarity=0.125  Sum_probs=67.4

Q ss_pred             EEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCC-EEEEecCCCcEEEEEcCCCCEE-EEEec-
Q 022716          176 IAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGD-YIASASEDLFIDISNVHTGRTV-HQIPC-  252 (293)
Q Consensus       176 ~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~-~l~s~s~d~~i~iw~~~~~~~~-~~~~~-  252 (293)
                      .-++|..+.+|.-. ..++.|||+++..+++++.- ..+|.-=.|-.+.. -|+|   +..|+-|++...... +.+.. 
T Consensus        71 AIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~-~e~VvfWkWis~~~l~lVT---~~aVyHW~~~~~s~P~k~fdR~  145 (1630)
T 1xi4_A           71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLNTVALVT---DNAVYHWSMEGESQPVKMFDRH  145 (1630)
T ss_pred             hccCCCcceEEEec-CCeEEEeehHHhhhhccccc-CCCceEEEecCCCeeEEEc---CCeEEEeccCCCCccHHHHhcc
Confidence            34578777777765 67899999988766665532 23555555543332 2343   345899999643222 21211 


Q ss_pred             ----CCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeeec
Q 022716          253 ----RAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN  292 (293)
Q Consensus       253 ----~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~~  292 (293)
                          ...|.+-.-+++.+.++..|-...-- .-.|.|.+|++|+
T Consensus       146 ~~L~~~QIinY~~d~~~kW~~l~gi~~~~~-~v~G~mQLyS~er  188 (1630)
T 1xi4_A          146 SSLAGCQIINYRTDAKQKWLLLTGISAQQN-RVVGAMQLYSVDR  188 (1630)
T ss_pred             hhcccCeeEEeeeCCCCCeEEEEeeccCCC-cccceeeeeeccc
Confidence                22355566678888888777522111 3459999999986

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=86.33  E-value=23  Score=33.66  Aligned_cols=39  Identities=18%  Similarity=0.226  Sum_probs=33.6

Q ss_pred             CeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEec
Q 022716          214 PVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPC  252 (293)
Q Consensus       214 ~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~  252 (293)
                      .+.+++..++..++.+-+.|+.+++|++.+++.+.....
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL  275 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL  275 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecc
Confidence            467777788889999999999999999999998877653

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=86.21  E-value=29  Score=34.69  Aligned_cols=182  Identities=14%  Similarity=0.137  Sum_probs=96.3

Q ss_pred             CCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCC--cCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCe-eeeee
Q 022716           29 NCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGH--ADSVDQLCWDPKHADLIATASGDKTVRLWDARSGK-CSQQA  105 (293)
Q Consensus        29 s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h--~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~-~~~~~  105 (293)
                      +|..+.||--. ..+++|+|++...  +     +..|  ...|....|-..  +.|+ -=.+..|.-|++.... +...+
T Consensus        74 nP~~~iiALra-g~~lQiFnl~~k~--k-----lks~~~~e~VvfWkWis~--~~l~-lVT~~aVyHW~~~~~s~P~k~f  142 (1630)
T 1xi4_A           74 NPASKVIALKA-GKTLQIFNIEMKS--K-----MKAHTMTDDVTFWKWISL--NTVA-LVTDNAVYHWSMEGESQPVKMF  142 (1630)
T ss_pred             CCCcceEEEec-CCeEEEeehHHhh--h-----hcccccCCCceEEEecCC--CeeE-EEcCCeEEEeccCCCCccHHHH
Confidence            34455555443 5788899886421  1     2222  346777788543  2222 2235789999996432 22222


Q ss_pred             ee-----cCceEEEEEcCCCCEEEEEe-------CCCeEEEEEccccceeee---------ec-----ccceeeeeEEe-
Q 022716          106 EL-----SGENINITYKPDGTHIAVGN-------RDDELTILDVRKFKPIHR---------RK-----FGYEVNEIAWN-  158 (293)
Q Consensus       106 ~~-----~~~~~~~~~~~~~~~l~~~~-------~d~~i~l~d~~~~~~~~~---------~~-----~~~~~~~v~~~-  158 (293)
                      ..     ...+++.+.+++.++++..+       -.|.+.++..+.......         .+     .+..+.++.+. 
T Consensus       143 dR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~  222 (1630)
T 1xi4_A          143 DRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRG  222 (1630)
T ss_pred             hcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchhhhHhHhhhheeccCCCCCCceEEEEEEec
Confidence            21     34566777888889887654       236677777654322100         00     11112222222 


Q ss_pred             cCCCEEE-EecC-----------------------CCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCC
Q 022716          159 MTGEMFF-LTTG-----------------------NAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWP  214 (293)
Q Consensus       159 ~~~~~~~-~~~~-----------------------~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~  214 (293)
                      +.|..+. +.-+                       .+-..++.+++....+..-+.-|.|++||+.++.++..-+....+
T Consensus       223 ~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~  302 (1630)
T 1xi4_A          223 QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGET  302 (1630)
T ss_pred             CCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhccccCCc
Confidence            1121111 1110                       111345566666677778888999999999999877654433444


Q ss_pred             eeEEEEc
Q 022716          215 VRTISFS  221 (293)
Q Consensus       215 v~~l~~s  221 (293)
                      |-..+.+
T Consensus       303 iF~~~~~  309 (1630)
T 1xi4_A          303 IFVTAPH  309 (1630)
T ss_pred             eEEeccC
Confidence            4444433

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=86.06  E-value=4.1  Score=33.54  Aligned_cols=121  Identities=12%  Similarity=0.031  Sum_probs=66.6

Q ss_pred             CEEEEEeCCCeEEEEeCCCCeeeeeeeec--CceEEEEE--cCCCCEEEEE--eCCCeEEEEEccccceeeeecccceee
Q 022716           80 DLIATASGDKTVRLWDARSGKCSQQAELS--GENINITY--KPDGTHIAVG--NRDDELTILDVRKFKPIHRRKFGYEVN  153 (293)
Q Consensus        80 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~--~~~~~~~~--~~~~~~l~~~--~~d~~i~l~d~~~~~~~~~~~~~~~~~  153 (293)
                      .+++.++.||.|.-.|..+|+.+-.++..  .+.....-  .+.+..++.+  +.||.+..++..+.........+..+.
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~   90 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS   90 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence            46778999999999999999877766554  22222110  1112244444  579999999977653221111110000


Q ss_pred             eeEEecCCCEEEEecCCCCEE-EEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEee
Q 022716          154 EIAWNMTGEMFFLTTGNAGCY-CIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT  209 (293)
Q Consensus       154 ~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~  209 (293)
                            ..+...   ...++. ..--...+..+.+|+.++.+...|+++|+.+-++.
T Consensus        91 ------~SP~~~---~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~  138 (339)
T 2be1_A           91 ------TSPLHL---KTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFG  138 (339)
T ss_dssp             ------TCSEEE---ECC----------CCEEEEECEEEEEEEEEETTTCCEEEEES
T ss_pred             ------cccccc---CCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEe
Confidence                  000000   000000 00000145678889999999999999998887764

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=84.36  E-value=14  Score=29.50  Aligned_cols=93  Identities=16%  Similarity=0.105  Sum_probs=47.8

Q ss_pred             CCCEEEEecCC-------CcEEEEeCCCCEEEEEeeccCCC-eeEEEEccCCCEEEEecC------CCcEEEEEcCCCCE
Q 022716          181 MGRYFAVGSAD-------SLVSLWDISEMLCVRTFTKLEWP-VRTISFSHTGDYIASASE------DLFIDISNVHTGRT  246 (293)
Q Consensus       181 ~~~~l~~gs~d-------~~i~iwd~~~~~~~~~~~~~~~~-v~~l~~sp~~~~l~s~s~------d~~i~iw~~~~~~~  246 (293)
                      ++..++.|+.+       +.+.+||..+.+-.. +.....+ -...+...+++..+.|+.      -..+.++|..+.+-
T Consensus       109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~-~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W  187 (318)
T 2woz_A          109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSE-VKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDW  187 (318)
T ss_dssp             TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEE-ECCCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEE
T ss_pred             CCEEEEEcCccCCCCcccceEEEEeCCCCCEeE-CCCCCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEE
Confidence            56666777653       357888987764332 1111111 111112246777777764      23488999887643


Q ss_pred             EE--EEecCCCcceeEECCCCCeEEEEEcCC
Q 022716          247 VH--QIPCRAAMNSVEWNPKYNLLAYAGDDK  275 (293)
Q Consensus       247 ~~--~~~~~~~i~~~~~sp~~~~la~~~~d~  275 (293)
                      ..  .++....-.++.. -++.+++.||.+.
T Consensus       188 ~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~  217 (318)
T 2woz_A          188 KDLAPMKTPRSMFGVAI-HKGKIVIAGGVTE  217 (318)
T ss_dssp             EEECCCSSCCBSCEEEE-ETTEEEEEEEEET
T ss_pred             EECCCCCCCcccceEEE-ECCEEEEEcCcCC
Confidence            22  1221111112222 2567888888764

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=81.29  E-value=25  Score=30.18  Aligned_cols=204  Identities=14%  Similarity=0.106  Sum_probs=113.4

Q ss_pred             CCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCC-eeeeeeee
Q 022716           29 NCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG-KCSQQAEL  107 (293)
Q Consensus        29 s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~-~~~~~~~~  107 (293)
                      +|..+.||--. ..+++|+|++..  .+.....   ....|....|-..  +.|+ -=.+..|.-|++... .+...+..
T Consensus        74 nP~~~iiALra-g~~lQiFnle~K--~klks~~---~~e~VvfWkWis~--~~l~-lVT~taVyHWsi~~~s~P~kvFdR  144 (494)
T 1bpo_A           74 NPASKVIALKA-GKTLQIFNIEMK--SKMKAHT---MTDDVTFWKWISL--NTVA-LVTDNAVYHWSMEGESQPVKMFDR  144 (494)
T ss_dssp             CSSSSCEEEEE-TTEEEEEETTTT--EEEEEEE---CSSCCCEEEEEET--TEEE-EECSSEEEEEESSSSCCCEEEEEC
T ss_pred             CCCCcEEEEec-CCeEEEEchHHh--hhhccee---cCCCceEEEecCC--CeEE-EEcCCeeEEecccCCCCchhheec
Confidence            56666666544 689999999753  1222111   1346777788543  2332 234678999999643 33333333


Q ss_pred             -----cCceEEEEEcCCCCEEEEEeC-------CCeEEEEEccccceeee---------eccc-----ceeeeeEEec-C
Q 022716          108 -----SGENINITYKPDGTHIAVGNR-------DDELTILDVRKFKPIHR---------RKFG-----YEVNEIAWNM-T  160 (293)
Q Consensus       108 -----~~~~~~~~~~~~~~~l~~~~~-------d~~i~l~d~~~~~~~~~---------~~~~-----~~~~~v~~~~-~  160 (293)
                           ...++....+++.++++..+-       .|.+.+|..+.......         .+.+     ..+.++++.. .
T Consensus       145 ~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~  224 (494)
T 1bpo_A          145 HSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQA  224 (494)
T ss_dssp             CGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTT
T ss_pred             chhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccchheeeeeeeEEEecCCCCCCceEEEEEEecCC
Confidence                 234667788899998876552       34567777655432111         0000     1122222211 1


Q ss_pred             C-CEEEEecC-----------------------CCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCee
Q 022716          161 G-EMFFLTTG-----------------------NAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVR  216 (293)
Q Consensus       161 ~-~~~~~~~~-----------------------~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~  216 (293)
                      + ++..+.-+                       .+-..++-+++....+..-+.-|.|++||++++.++..-+....+|-
T Consensus       225 g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF  304 (494)
T 1bpo_A          225 GGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIF  304 (494)
T ss_dssp             CCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred             CcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCCceE
Confidence            1 11111111                       11244666677777788888999999999999998877665556665


Q ss_pred             EEEEccCCCEEEEecCCCcEEEEEc
Q 022716          217 TISFSHTGDYIASASEDLFIDISNV  241 (293)
Q Consensus       217 ~l~~sp~~~~l~s~s~d~~i~iw~~  241 (293)
                      ..+......=++.....|.|.--.+
T Consensus       305 ~t~~~~~~~Gi~~Vnr~GqVl~v~v  329 (494)
T 1bpo_A          305 VTAPHEATAGIIGVNRKGQVLSVCV  329 (494)
T ss_dssp             EEEEETTTTEEEEEETTCEEEEEEE
T ss_pred             EecccCCCCcEEEEccCceEEEEEE
Confidence            5555444444444445555444433

>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A

Probab=80.96  E-value=3.6  Score=37.49  Aligned_cols=69  Identities=7%  Similarity=0.137  Sum_probs=42.6

Q ss_pred             cCCCEEEEecCCCcEEEEEcCCCCEEEEEecCCCc--ceeEECC---CCCeEEEEEcCCCC--CC-CCcceEEEEeeec
Q 022716          222 HTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAM--NSVEWNP---KYNLLAYAGDDKNK--YQ-ADEGVFRIYGFEN  292 (293)
Q Consensus       222 p~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~i--~~~~~sp---~~~~la~~~~d~~~--~~-~~~~~~~~~~~~~  292 (293)
                      ++..++++-+.|..+|+|++.+++.+.........  ..-...|   .+++|...+  ...  |. .+.|.||+|+++.
T Consensus       229 ~~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL~~~~~~~~s~L~~~~~~~~~Lrl~~--~~lv~y~P~~~G~Fk~~~l~~  305 (729)
T 3f7f_A          229 FHERYLIVLTQNCHLKIWDLTSFTLIQDYDMVSQSDSDPSHFRKVEAVGEYLSLYN--NTLVTLLPLENGLFQMGTLLV  305 (729)
T ss_dssp             ETTTEEEEEETTCEEEEEETTTTEEEEEEETTTTSCCCSSCCCCCCSCCCCEEESS--SEEEEEETTTTCEEEEEEEEC
T ss_pred             cCCcEEEEEEcCCeEEEEEcCCCceEEeeccccCccccccccCcccCcchhHhhee--eEEEEEecCCCCeEEEEEEEE
Confidence            45789999999999999999999988776652111  0001222   334443332  000  11 3568999998853

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	293
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	8e-27
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	8e-15
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-14
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-11
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-04
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	9e-18
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-16
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	4e-14
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	5e-05
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	7e-05
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-17
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	4e-14
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	5e-13
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-12
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-09
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	9e-06
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-14
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	5e-10
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	7e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.004
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	5e-14
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-08
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	5e-05
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-13
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-09
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	4e-09
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-12
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-07
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	9e-07
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-05
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-10
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	3e-10
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	3e-08
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	5e-10
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	8e-09
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-08
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.003
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	9e-10
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	8e-09
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-07
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-06
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-05
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-09
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	8e-07
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	3e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	6e-05
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	1e-09
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	4e-07
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	0.001
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	1e-08
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	6e-07
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	8e-07
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	4e-05
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	1e-04
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-08
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	6e-04
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	0.003
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-08
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	4e-08
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	4e-07
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	4e-06
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	4e-04
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	4e-08
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	5e-07
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	9e-07
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	7e-08
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	7e-05
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	6e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	3e-07
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	8e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.003
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	5e-07
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	4e-06
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	4e-05
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	0.003
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	4e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-04
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-06
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	3e-06
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	5e-06
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	1e-05
d1qnia2	441	b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter	2e-05
d1qnia2	441	b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter	2e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	3e-05

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  104 bits (260), Expect = 8e-27
 Identities = 57/303 (18%), Positives = 107/303 (35%), Gaps = 47/303 (15%)

Query: 17  TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDP 76
           +GH+  V  V ++   + + S S D T +VW  E     +     L+GH DSV  + +D 
Sbjct: 14  SGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERT----LKGHTDSVQDISFDH 69

Query: 77  KH-----------------------------------------ADLIATASGDKTVRLWD 95
                                                       D I +AS DKT+++W+
Sbjct: 70  SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWE 129

Query: 96  ARSGKCSQQ-AELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNE 154
            ++G C +           +    DGT IA  + D  + +  V   +     +    V E
Sbjct: 130 VQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVE 189

Query: 155 IAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWP 214
                    +   +   G         G +   GS D  + +WD+S  +C+ T    +  
Sbjct: 190 CISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNW 249

Query: 215 VRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPC-RAAMNSVEWNPKYNLLAYAGD 273
           VR + F   G +I S ++D  + + +    R +  +      + S++++     +     
Sbjct: 250 VRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSV 309

Query: 274 DKN 276
           D+ 
Sbjct: 310 DQT 312

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 71.3 bits (173), Expect = 8e-15
 Identities = 39/259 (15%), Positives = 80/259 (30%), Gaps = 45/259 (17%)

Query: 62  LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGT 121
           L GH   V ++ + P    ++ +AS D T+++WD  +G   +  +   +++         
Sbjct: 13  LSGHRSPVTRVIFHPVF-SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG 71

Query: 122 HIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG------------ 169
            +      D    L   +     R   G++ N  + ++      + +             
Sbjct: 72  KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ 131

Query: 170 -----------NAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTI 218
                            +  +  G   A  S D  V +W ++   C     +    V  I
Sbjct: 132 TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECI 191

Query: 219 SF--------------------SHTGDYIASASEDLFIDISNVHTGRTVHQIPC-RAAMN 257
           S+                       G ++ S S D  I + +V TG  +  +      + 
Sbjct: 192 SWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVR 251

Query: 258 SVEWNPKYNLLAYAGDDKN 276
            V ++     +    DDK 
Sbjct: 252 GVLFHSGGKFILSCADDKT 270

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 70.5 bits (171), Expect = 1e-14
 Identities = 44/207 (21%), Positives = 68/207 (32%), Gaps = 44/207 (21%)

Query: 12  HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQ 71
             + +TGH++ V  V  N  GT +AS S DQT RVW +           ELR H   V+ 
Sbjct: 135 CVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKA----ELREHRHVVEC 190

Query: 72  LCW-------------------DPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENI 112
           + W                     K    + + S DKT+++WD  +G C          +
Sbjct: 191 ISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWV 250

Query: 113 N-ITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNA 171
             + +   G  I     D  L + D +  + +                      L     
Sbjct: 251 RGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKT--------------------LNAHEH 290

Query: 172 GCYCIAIDPMGRYFAVGSADSLVSLWD 198
               +       Y   GS D  V +W+
Sbjct: 291 FVTSLDFHKTAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.9 bits (146), Expect = 2e-11
 Identities = 25/133 (18%), Positives = 51/133 (38%), Gaps = 6/133 (4%)

Query: 5   SIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG 64
            I +    S           +      G  L SGS D+T ++W +     G      L G
Sbjct: 190 CISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS---TGMCLM-TLVG 245

Query: 65  HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENIN-ITYKPDGTHI 123
           H + V  + +       I + + DKT+R+WD ++ +C +        +  + +     ++
Sbjct: 246 HDNWVRGVLFHSGG-KFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYV 304

Query: 124 AVGNRDDELTILD 136
             G+ D  + + +
Sbjct: 305 VTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.5 bits (93), Expect = 1e-04
 Identities = 26/118 (22%), Positives = 46/118 (38%), Gaps = 1/118 (0%)

Query: 162 EMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFS 221
           E + L+   +    +   P+       S D+ + +WD       RT       V+ ISF 
Sbjct: 9   EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFD 68

Query: 222 HTGDYIASASEDLFIDISNVHTGRTVHQI-PCRAAMNSVEWNPKYNLLAYAGDDKNKY 278
           H+G  +AS S D+ I + +      +  +      ++SV   P  + +  A  DK   
Sbjct: 69  HSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIK 126

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 79.8 bits (195), Expect = 9e-18
 Identities = 29/162 (17%), Positives = 52/162 (32%), Gaps = 19/162 (11%)

Query: 73  CWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENIN-ITYKPDGTHIAVGNRDDE 131
                   L  + + D + +LWD R G C Q       +IN I + P+G   A G+ D  
Sbjct: 190 LSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT 249

Query: 132 LTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSAD 191
             +                   ++  +     +       G   ++    GR    G  D
Sbjct: 250 CRL------------------FDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDD 291

Query: 192 SLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASED 233
              ++WD  +          +  V  +  +  G  +A+ S D
Sbjct: 292 FNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWD 333

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 76.7 bits (187), Expect = 1e-16
 Identities = 44/266 (16%), Positives = 79/266 (29%), Gaps = 24/266 (9%)

Query: 14  REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
           R   GH  K++++ W      L S S D    +W              +   +  V    
Sbjct: 49  RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHA----IPLRSSWVMTCA 104

Query: 74  WDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELT 133
           + P   + +A    D    +++ ++ + + +                             
Sbjct: 105 YAPSG-NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD---------- 153

Query: 134 ILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSL 193
                    I                  +    T        +++ P  R F  G+ D+ 
Sbjct: 154 ------DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDAS 207

Query: 194 VSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDI---SNVHTGRTVHQI 250
             LWD+ E +C +TFT  E  +  I F   G+  A+ S+D    +          T    
Sbjct: 208 AKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHD 267

Query: 251 PCRAAMNSVEWNPKYNLLAYAGDDKN 276
                + SV ++    LL    DD N
Sbjct: 268 NIICGITSVSFSKSGRLLLAGYDDFN 293

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 69.4 bits (168), Expect = 4e-14
 Identities = 37/183 (20%), Positives = 63/183 (34%), Gaps = 28/183 (15%)

Query: 19  HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKH 78
           H   V S++         SG+ D +A++W +      +       GH   ++ +C+ P +
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQT----FTGHESDINAICFFP-N 237

Query: 79  ADLIATASGDKTVRLWDARSGKCSQQAELSGENINIT---YKPDGTHIAVGNRDDELTIL 135
            +  AT S D T RL+D R+ +             IT   +   G  +  G  D    + 
Sbjct: 238 GNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVW 297

Query: 136 DVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVS 195
           D  K                          L   +    C+ +   G   A GS DS + 
Sbjct: 298 DALKADRAGV--------------------LAGHDNRVSCLGVTDDGMAVATGSWDSFLK 337

Query: 196 LWD 198
           +W+
Sbjct: 338 IWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.0 bits (97), Expect = 5e-05
 Identities = 9/35 (25%), Positives = 16/35 (45%)

Query: 14  REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWH 48
               GH  +V  +     G  +A+GS D   ++W+
Sbjct: 306 GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.6 bits (96), Expect = 7e-05
 Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 1/82 (1%)

Query: 201 EMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP-CRAAMNSV 259
           +M   RT       +  + +      + SAS+D  + I + +T   VH IP   + + + 
Sbjct: 44  QMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTC 103

Query: 260 EWNPKYNLLAYAGDDKNKYQAD 281
            + P  N +A  G D      +
Sbjct: 104 AYAPSGNYVACGGLDNICSIYN 125

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 80.2 bits (196), Expect = 1e-17
 Identities = 61/287 (21%), Positives = 106/287 (36%), Gaps = 38/287 (13%)

Query: 9   KNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADS 68
           +NL++         + SV ++  G  LA+G+ D+  R+W IE         + +    + 
Sbjct: 110 ENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKI-----VMILQGHEQ 164

Query: 69  VDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAEL-SGENINITYKPDGTHIAVGN 127
                      D + + SGD+TVR+WD R+G+CS    +  G         DG +IA G+
Sbjct: 165 DIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGS 224

Query: 128 RDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAV 187
            D  + + D      + R             +  E    T      Y +     G+    
Sbjct: 225 LDRAVRVWDSETGFLVER-------------LDSENESGTGHKDSVYSVVFTRDGQSVVS 271

Query: 188 GSADSLVSLWDISE------------MLCVRTFTKLEWPVRTISFSHTGDYIASASEDLF 235
           GS D  V LW++                C  T+   +  V +++ +   +YI S S+D  
Sbjct: 272 GSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRG 331

Query: 236 IDISNVHTGRTVHQIP-------CRAAMNSVEWNPKYNLLAYAGDDK 275
           +   +  +G  +  +          A  N     P+YN+ A    D 
Sbjct: 332 VLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDC 378

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 69.8 bits (169), Expect = 4e-14
 Identities = 33/201 (16%), Positives = 68/201 (33%), Gaps = 33/201 (16%)

Query: 19  HKKKVHSVAWNCTGTKLASGSVDQTARVWHIE---PHGHGKVKDIELRGHADSVDQLCWD 75
                        G  +A+GS+D+  RVW  E          ++    GH DSV  + + 
Sbjct: 204 EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFT 263

Query: 76  PKHADLIATASGDKTVRLWDARSGKCSQQAEL-------------SGENINITYKPDGTH 122
                 + + S D++V+LW+ ++      ++                  +++    +  +
Sbjct: 264 R-DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEY 322

Query: 123 IAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPM 181
           I  G++D  +   D +   P+   +     V  +A                    ++ P 
Sbjct: 323 ILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAV---------------ANGSSLGPE 367

Query: 182 GRYFAVGSADSLVSLWDISEM 202
              FA GS D    +W   ++
Sbjct: 368 YNVFATGSGDCKARIWKYKKI 388

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.4 bits (160), Expect = 5e-13
 Identities = 31/143 (21%), Positives = 60/143 (41%), Gaps = 16/143 (11%)

Query: 12  HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIE--------PHGHGKVKDIELR 63
            +   TGHK  V+SV +   G  + SGS+D++ ++W+++           +    ++   
Sbjct: 246 ENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYI 305

Query: 64  GHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENIN-------ITY 116
           GH D V  +     + + I + S D+ V  WD +SG      +    ++         + 
Sbjct: 306 GHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSL 364

Query: 117 KPDGTHIAVGNRDDELTILDVRK 139
            P+    A G+ D +  I   +K
Sbjct: 365 GPEYNVFATGSGDCKARIWKYKK 387

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.4 bits (155), Expect = 3e-12
 Identities = 45/281 (16%), Positives = 83/281 (29%), Gaps = 31/281 (11%)

Query: 18  GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK 77
            H   V  V ++  G  LA+G  ++T +V+ +            L   + +      DP+
Sbjct: 60  DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVA----RLSDDSAAN----KDPE 110

Query: 78  HADLIATASGDKTVR--LWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTIL 135
           + +  ++ S D  +R   +       +  AE     I          I  G+  D  ++ 
Sbjct: 111 NLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLD 170

Query: 136 DVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVS 195
                  +        V             L+  +           G+Y A GS D  V 
Sbjct: 171 YFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVR 230

Query: 196 LWDISEMLCVRT-------FTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTV- 247
           +WD      V          T  +  V ++ F+  G  + S S D  + + N+       
Sbjct: 231 VWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKS 290

Query: 248 ------------HQIPCRAAMNSVEWNPKYNLLAYAGDDKN 276
                         I  +  + SV        +     D+ 
Sbjct: 291 DSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRG 331

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.0 bits (133), Expect = 1e-09
 Identities = 27/96 (28%), Positives = 38/96 (39%), Gaps = 9/96 (9%)

Query: 7   PFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHA 66
           P        Y GHK  V SVA       + SGS D+    W  +    G      L+GH 
Sbjct: 295 PNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKK---SGNPLL-MLQGHR 350

Query: 67  DSVDQLCWDPKHA-----DLIATASGDKTVRLWDAR 97
           +SV  +      +     ++ AT SGD   R+W  +
Sbjct: 351 NSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.4 bits (103), Expect = 9e-06
 Identities = 34/211 (16%), Positives = 75/211 (35%), Gaps = 9/211 (4%)

Query: 72  LCWDPKHADLIATASGDKTVRLWDARSGKC-----SQQAELSGENINITYKPDGTHIAVG 126
           L  D +          +    L++    +       +  + +     + +  DG ++A G
Sbjct: 21  LDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATG 80

Query: 127 NRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFA 186
             +    +  V     + R       N+   N+        + +     +   P G++ A
Sbjct: 81  C-NKTTQVYRVSDGSLVARLSDDSAANKDPENLN--TSSSPSSDLYIRSVCFSPDGKFLA 137

Query: 187 VGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRT 246
            G+ D L+ +WDI     V      E  + ++ +  +GD + S S D  + I ++ TG+ 
Sbjct: 138 TGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC 197

Query: 247 VHQIPCRAAMNSVEWNPKY-NLLAYAGDDKN 276
              +     + +V  +P     +A    D+ 
Sbjct: 198 SLTLSIEDGVTTVAVSPGDGKYIAAGSLDRA 228

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 71.4 bits (173), Expect = 1e-14
 Identities = 34/268 (12%), Positives = 80/268 (29%), Gaps = 9/268 (3%)

Query: 16  YTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWD 75
           ++   + +   AWN   T++A    +    ++    +   +V   EL+ H   V  + W 
Sbjct: 3   HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVH--ELKEHNGQVTGVDWA 60

Query: 76  PKHADLIATASGDKTVRLWDARSGKCSQQAELS---GENINITYKPDGTHIAVGNRDDEL 132
           P   + I T   D+   +W  +         +         + + P+    AVG+    +
Sbjct: 61  PDS-NRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVI 119

Query: 133 TILDVRKFKP--IHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSA 190
           +I    +     + +       + +          L    +  +   I            
Sbjct: 120 SICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERP 179

Query: 191 DSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNV-HTGRTVHQ 249
                   +     +   +     V  + FS  G  +A  S D  + +++          
Sbjct: 180 APTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATL 239

Query: 250 IPCRAAMNSVEWNPKYNLLAYAGDDKNK 277
                 + +V +  + +L+A   D    
Sbjct: 240 ASETLPLLAVTFITESSLVAAGHDCFPV 267

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 57.2 bits (136), Expect = 5e-10
 Identities = 28/225 (12%), Positives = 63/225 (28%)

Query: 9   KNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADS 68
           K +   E   H  +V  V W     ++ +   D+ A VW ++         I     A  
Sbjct: 40  KWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAAR 99

Query: 69  VDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNR 128
             +   + K   + + +                 +  +    +  ++       + +   
Sbjct: 100 CVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAG 159

Query: 129 DDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVG 188
             +        +      +               MF  ++     + +     G   A  
Sbjct: 160 SCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWV 219

Query: 189 SADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASED 233
           S DS V L D  + + V T      P+  ++F      +A+  + 
Sbjct: 220 SHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDC 264

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.3 bits (87), Expect = 7e-04
 Identities = 14/89 (15%), Positives = 25/89 (28%), Gaps = 8/89 (8%)

Query: 15  EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW 74
            + G        +      +    ++D+ A        G           H +SV Q+  
Sbjct: 279 SFGGRLDVPKQSSQRGLTARERFQNLDKKASSE-----GSAAAGAGLDSLHKNSVSQISV 333

Query: 75  DPKHAD---LIATASGDKTVRLWDARSGK 100
                       T   D  + +WD RS +
Sbjct: 334 LSGGKAKCSQFCTTGMDGGMSIWDVRSLE 362

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 36.0 bits (81), Expect = 0.004
 Identities = 32/192 (16%), Positives = 61/192 (31%), Gaps = 24/192 (12%)

Query: 12  HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQ 71
              E +     VH V ++  G+++A  S D T  +   +                  +  
Sbjct: 193 LMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLAS----ETLPLLA 248

Query: 72  LCWDPKHADLIATASGDKTVRL-WDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDD 130
           + +  +   L+A       V   +D+ +GK S    L          P  +        +
Sbjct: 249 VTFITES-SLVAAGHDCFPVLFTYDSAAGKLSFGGRLD--------VPKQSSQRGLTARE 299

Query: 131 ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSA 190
               LD +K         G  ++ +  N   ++  L+ G A C           F     
Sbjct: 300 RFQNLD-KKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKC---------SQFCTTGM 349

Query: 191 DSLVSLWDISEM 202
           D  +S+WD+  +
Sbjct: 350 DGGMSIWDVRSL 361

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.1 bits (167), Expect = 5e-14
 Identities = 38/284 (13%), Positives = 83/284 (29%), Gaps = 28/284 (9%)

Query: 18  GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGK-VKDIELRGHADSVDQLCWDP 76
            H + V +V  +     + +G      +VW I   G+   V  ++     + +      P
Sbjct: 49  NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP 107

Query: 77  KHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILD 136
                +       T+ +WD  +     +AEL+                V         + 
Sbjct: 108 -DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIA 166

Query: 137 VRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAG------------------------ 172
           V         +      + A  +            G                        
Sbjct: 167 VWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQ 226

Query: 173 CYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASE 232
            + +   P G + AVG   S V +  +++    +     E  V ++ F++ G +  S  +
Sbjct: 227 IFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLH-ESCVLSLKFAYCGKWFVSTGK 285

Query: 233 DLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKN 276
           D  ++      G ++ Q    +++ S + +     +     DK 
Sbjct: 286 DNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKK 329

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.5 bits (124), Expect = 2e-08
 Identities = 22/126 (17%), Positives = 42/126 (33%), Gaps = 6/126 (4%)

Query: 12  HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQ 71
              +      ++ S+ +  TG  LA G       V H+      ++       H   V  
Sbjct: 216 RQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHL-----HESCVLS 270

Query: 72  LCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDE 131
           L +         +   D  +  W    G    Q++ S   ++     D  +I  G+ D +
Sbjct: 271 LKFAYCG-KWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKK 329

Query: 132 LTILDV 137
            T+ +V
Sbjct: 330 ATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (97), Expect = 5e-05
 Identities = 27/188 (14%), Positives = 55/188 (29%), Gaps = 27/188 (14%)

Query: 12  HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQ 71
             R++ GH      +  +  GTKL +G +D T R W +      +            +  
Sbjct: 175 LVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQ-----HDFTSQIFS 229

Query: 72  LCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDE 131
           L + P   + +A       V +         Q        +++ +   G       +D+ 
Sbjct: 230 LGYCP-TGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNL 288

Query: 132 LTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSAD 191
           L                            G   F +  ++      I    +Y   GS D
Sbjct: 289 LNAWRTP---------------------YGASIFQSKESSSVLSCDISVDDKYIVTGSGD 327

Query: 192 SLVSLWDI 199
              +++++
Sbjct: 328 KKATVYEV 335

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 67.6 bits (163), Expect = 2e-13
 Identities = 33/265 (12%), Positives = 69/265 (26%), Gaps = 35/265 (13%)

Query: 18  GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG--------HADSV 69
            H   + SV+     +   S S D   +VW  +   +   KD             H D +
Sbjct: 12  AHDADIFSVSA--CNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVL 69

Query: 70  DQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINIT-------------- 115
             +  D     L+AT S    +  +       +++      ++  +              
Sbjct: 70  QAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGA 129

Query: 116 --YKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGC 173
              +     +   +      I     F                  + G +    T +   
Sbjct: 130 SNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTL--NWSPTLELQGTVESPMTPSQFA 187

Query: 174 YCIAIDPMGRYFAVGSADSLVSL------WDISEMLCVRTFTKLEWPVRTISFSHTGDYI 227
             + I   G   A G  +  V +        +       +       +R++ FS  G  +
Sbjct: 188 TSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLL 246

Query: 228 ASASEDLFIDISNVHTGRTVHQIPC 252
           A A +        ++      +I  
Sbjct: 247 AIAHDSNSFGCITLYETEFGERIGS 271

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.0 bits (133), Expect = 1e-09
 Identities = 31/288 (10%), Positives = 72/288 (25%), Gaps = 32/288 (11%)

Query: 4   SSIPFKNLHSREYTGHKKKVHSVAWNCTG-----TKLASGSVDQTARVW----------- 47
             + F+ L   +    K    ++ W  +       +L +  V  T  +W           
Sbjct: 103 KKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNS 162

Query: 48  ---HIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQ 104
              +  P    +         +     +    +   LIAT   + TV++ +  + +    
Sbjct: 163 LTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPLYN 220

Query: 105 AELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYE---VNEIAWNMTG 161
            E     IN +        +       +                  E      +  + + 
Sbjct: 221 FESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQ 280

Query: 162 EMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT----KLEWPVRT 217
                   ++    ++ +  G        D  +  WD+     + T       +E     
Sbjct: 281 ASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDI 340

Query: 218 ISFSHTGDYIASASEDLFIDISNVHTGRTVHQ----IPCRAAMNSVEW 261
           ++    GD +A         +               + C     S+ W
Sbjct: 341 LAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRW 388

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.9 bits (130), Expect = 4e-09
 Identities = 29/261 (11%), Positives = 67/261 (25%), Gaps = 58/261 (22%)

Query: 62  LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENIN-------- 113
            + H   +  +           + SGD  +++WD +        + S  +          
Sbjct: 10  GKAHDADIFSVSACNSF---TVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHV 66

Query: 114 ------ITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLT 167
                      +   +A  +   +L    + +     +                ++    
Sbjct: 67  DVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKK----------VIFEKLDLLDSD 116

Query: 168 TGNAGCYCIAIDPMG-----RYFAVGSADSLVSLWDISEMLCVRTFTKLEW--------- 213
                 + +                        +W             L W         
Sbjct: 117 MKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGT 176

Query: 214 ---------PVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAM-------N 257
                       ++  S  G  IA+   +  + IS + T R ++    + +M        
Sbjct: 177 VESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIR 235

Query: 258 SVEWNPKYNLLAYAGDDKNKY 278
           SV+++P+ +LLA A D  +  
Sbjct: 236 SVKFSPQGSLLAIAHDSNSFG 256

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.5 bits (155), Expect = 2e-12
 Identities = 35/307 (11%), Positives = 78/307 (25%), Gaps = 50/307 (16%)

Query: 18  GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK 77
             K  +  +    + + L   S D +  V+  +      V  ++   +   +    +   
Sbjct: 9   APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDI-QAKNVDLLQSLRYKHPLLCCNFIDN 67

Query: 78  HADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDV 137
               I   +    +   D       Q    +  N+ I          +     +  I  +
Sbjct: 68  TDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVI 127

Query: 138 RKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAID------------------ 179
                         +N     +  ++F + T ++       +                  
Sbjct: 128 DPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTI 187

Query: 180 ----------------PMGRYFAVGSADSLVSLWDISEMLCVRTFTKLE----------- 212
                                +A  S D  V++    +       +K             
Sbjct: 188 EESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKD 247

Query: 213 ----WPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLL 268
               +PV +I FS    ++ +A  D  I   N+ T + +         + V+     N+L
Sbjct: 248 TNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNIL 307

Query: 269 AYAGDDK 275
             A  D 
Sbjct: 308 CLATSDD 314

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.7 bits (114), Expect = 3e-07
 Identities = 19/133 (14%), Positives = 39/133 (29%), Gaps = 12/133 (9%)

Query: 9   KNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHG-----------HGKV 57
            N    E     +              A  S+D    V   +  G               
Sbjct: 183 DNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHR 242

Query: 58  KDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYK 117
            +++    A  V+ + + P+H   + TA  D  +  W+ ++ K  +      E+  +   
Sbjct: 243 LNLKDTNLAYPVNSIEFSPRH-KFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA 301

Query: 118 PDGTHIAVGNRDD 130
                + +   DD
Sbjct: 302 CSDNILCLATSDD 314

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.2 bits (110), Expect = 9e-07
 Identities = 28/274 (10%), Positives = 61/274 (22%), Gaps = 56/274 (20%)

Query: 57  VKDIELR-GHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQ----AELSGEN 111
           ++ +++     D +  +   P    L+   S D ++ ++       +             
Sbjct: 1   MQIVQIEQAPKDYISDIKIIPSK-SLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPL 59

Query: 112 INITYKPD-GTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFL---- 166
           +   +  +    I VG    E+  +D+                 I          L    
Sbjct: 60  LCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAAS 119

Query: 167 -------------------------TTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISE 201
                                               +D       VG  +S V  + +  
Sbjct: 120 WDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPL 179

Query: 202 MLCVRT----FTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTV---------- 247
                                      +  A +S D  + +                   
Sbjct: 180 CEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFR 239

Query: 248 ------HQIPCRAAMNSVEWNPKYNLLAYAGDDK 275
                         +NS+E++P++  L  AG D 
Sbjct: 240 CHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDG 273

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.3 bits (100), Expect = 2e-05
 Identities = 14/85 (16%), Positives = 33/85 (38%), Gaps = 6/85 (7%)

Query: 12  HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQ 71
            + + T     V+S+ ++     L +   D     W+++     K      + + DSV +
Sbjct: 243 LNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQ---TRKKIKNFAKFNEDSVVK 299

Query: 72  LCWDPKHADLIATASGDKTVRLWDA 96
           +       +++  A+ D T +   A
Sbjct: 300 IACSD---NILCLATSDDTFKTNAA 321

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.1 bits (141), Expect = 1e-10
 Identities = 43/231 (18%), Positives = 73/231 (31%), Gaps = 22/231 (9%)

Query: 62  LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGT 121
           L+GH D V   C      + I + S D T+++W A +GKC +        +  +   D  
Sbjct: 12  LKGHDDHV-ITCLQF-CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNI 69

Query: 122 HIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMF----------------- 164
            I+                           V  +  +    +                  
Sbjct: 70  IISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQC 129

Query: 165 FLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTG 224
                        +   GR    G+ D +V +WD     C+ T       V ++ F   G
Sbjct: 130 LHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD--G 187

Query: 225 DYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDK 275
            ++ S S D  I + +V TG  +H +    ++ S     K N+L     D 
Sbjct: 188 IHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSG-MELKDNILVSGNADS 237

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.9 bits (138), Expect = 3e-10
 Identities = 31/212 (14%), Positives = 68/212 (32%), Gaps = 30/212 (14%)

Query: 73  CWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDEL 132
                    + + + D  V++WD  +  C    +    N   + + DG H+  G+ D  +
Sbjct: 141 RCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQ-GHTNRVYSLQFDGIHVVSGSLDTSI 199

Query: 133 TILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADS 192
            + DV     IH                      T          ++        G+ADS
Sbjct: 200 RVWDVETGNCIH----------------------TLTGHQSLTSGMELKDNILVSGNADS 237

Query: 193 LVSLWDISEMLCVRTFTKLEWPV-RTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP 251
            V +WDI    C++T                  +++ ++S+D  + + ++ TG  +  + 
Sbjct: 238 TVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLV 297

Query: 252 C------RAAMNSVEWNPKYNLLAYAGDDKNK 277
                     +  +  +    + A    +  +
Sbjct: 298 TLESGGSGGVVWRIRASNTKLVCAVGSRNGTE 329

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (123), Expect = 3e-08
 Identities = 26/122 (21%), Positives = 46/122 (37%), Gaps = 12/122 (9%)

Query: 14  REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
              TGH+     +        L SG+ D T ++W I+     +      +G       + 
Sbjct: 211 HTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTL----QGPNKHQSAVT 264

Query: 74  WDPKHADLIATASGDKTVRLWDARSGKCSQQAEL------SGENINITYKPDGTHIAVGN 127
               + + + T+S D TV+LWD ++G+  +           G    I         AVG+
Sbjct: 265 CLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGS 324

Query: 128 RD 129
           R+
Sbjct: 325 RN 326

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 57.1 bits (136), Expect = 5e-10
 Identities = 21/206 (10%), Positives = 51/206 (24%), Gaps = 10/206 (4%)

Query: 80  DLIATASGDKTVRLWDARSGKCSQQAELSGENIN---ITYKPDGTHIAV-GNRDDELTIL 135
           D I   +    + + D       +   ++            P G       N+ + L  +
Sbjct: 2   DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61

Query: 136 DVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVS 195
           D+   + + R              +     L+                        + V+
Sbjct: 62  DLVTGETLGRIDLSTPEE---RVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVA 118

Query: 196 LWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAA 255
           L+D   +   + F         ++++  G  +     DL +   +   G  V   P ++ 
Sbjct: 119 LYDAETLSRRKAFEAPRQI-TMLAWARDGSKLYGLGRDLHVM--DPEAGTLVEDKPIQSW 175

Query: 256 MNSVEWNPKYNLLAYAGDDKNKYQAD 281
                  P    +    +        
Sbjct: 176 EAETYAQPDVLAVWNQHESSGVMATP 201

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 53.3 bits (126), Expect = 8e-09
 Identities = 12/141 (8%), Positives = 34/141 (24%), Gaps = 6/141 (4%)

Query: 5   SIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG 64
                 + ++  +                     +         +E    G++   E+R 
Sbjct: 182 QPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLE---TGEMAMREVRI 238

Query: 65  HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIA 124
                     +P              +  +D       ++  L     ++    DG+ + 
Sbjct: 239 MDVFYFSTAVNPAKTRA---FGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVW 295

Query: 125 VGNRDDELTILDVRKFKPIHR 145
           +G    +L   D    +   +
Sbjct: 296 LGGALGDLAAYDAETLEKKGQ 316

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 51.3 bits (121), Expect = 4e-08
 Identities = 24/212 (11%), Positives = 50/212 (23%), Gaps = 37/212 (17%)

Query: 14  REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
           R+     +++  +AW   G+KL     D              K             D L 
Sbjct: 128 RKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLA 187

Query: 74  WDPKH----------------ADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYK 117
              +H                 D     +    +   D  +G+ + +     +    +  
Sbjct: 188 VWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTA 247

Query: 118 PDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIA 177
            +          + L   D+ K   I R    +                       Y + 
Sbjct: 248 VNPAKTRAFGAYNVLESFDLEKNASIKRVPLPHSY---------------------YSVN 286

Query: 178 IDPMGRYFAVGSADSLVSLWDISEMLCVRTFT 209
           +   G    +G A   ++ +D   +       
Sbjct: 287 VSTDGSTVWLGGALGDLAAYDAETLEKKGQVD 318

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 36.3 bits (82), Expect = 0.003
 Identities = 14/105 (13%), Positives = 28/105 (26%), Gaps = 8/105 (7%)

Query: 6   IPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGH 65
           +    +  RE         S A N   T+            + +E +       I+    
Sbjct: 226 LETGEMAMREVRIMDVFYFSTAVNPAKTRAFG--AYNVLESFDLEKN-----ASIKRVPL 278

Query: 66  ADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGE 110
             S   +         +        +  +DA + +   Q +L G 
Sbjct: 279 PHSYYSVNVSTD-GSTVWLGGALGDLAAYDAETLEKKGQVDLPGN 322

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 56.3 bits (134), Expect = 9e-10
 Identities = 14/127 (11%), Positives = 35/127 (27%), Gaps = 5/127 (3%)

Query: 19  HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKH 78
                    +       A+  +        ++    GK    E     +        PK 
Sbjct: 207 FSMLYTIARFKDDKQDPATADLLYGYLSVDLK---TGKTHTQEFADLTELYFTGLRSPKD 263

Query: 79  ADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVR 138
            + I        +  +D +  K  + A L      + +   G  + +G   ++L + +  
Sbjct: 264 PNQIYGVLN--RLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPD 321

Query: 139 KFKPIHR 145
             + +  
Sbjct: 322 TLEKVKN 328

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 53.6 bits (127), Expect = 8e-09
 Identities = 24/188 (12%), Positives = 47/188 (25%), Gaps = 24/188 (12%)

Query: 24  HSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIA 83
                  TG    +  +    R  +  P           R     +  +          A
Sbjct: 165 IYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPA 224

Query: 84  TASGDKTVRLWDARSGKCSQQAELSGEN--INITYKPDGTHIAVGNRDDELTILDVRKFK 141
           TA         D ++GK   Q               P   +       + L   D+++ K
Sbjct: 225 TADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIY-GVLNRLAKYDLKQRK 283

Query: 142 PIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISE 201
            I      +                       YC+A D  G    +G   + +++++   
Sbjct: 284 LIKAANLDHTY---------------------YCVAFDKKGDKLYLGGTFNDLAVFNPDT 322

Query: 202 MLCVRTFT 209
           +  V+   
Sbjct: 323 LEKVKNIK 330

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 50.1 bits (118), Expect = 1e-07
 Identities = 21/242 (8%), Positives = 45/242 (18%), Gaps = 6/242 (2%)

Query: 26  VAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATA 85
            A       +   +      V  +       V    +             P +       
Sbjct: 2   PALKAGHEYMIVTNYPNNLHVVDVA---SDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLN 58

Query: 86  SGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR 145
           +    +   D  + K +  A LS     +         A+     E+        +    
Sbjct: 59  NHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSM--YSFAISPDGKEVYATVNPTQRLNDH 116

Query: 146 RKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCV 205
                   E+     G              + +       ++  A   +   D+      
Sbjct: 117 YVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYT 176

Query: 206 RTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKY 265
                  W  R    +    Y                  R        A  + +      
Sbjct: 177 VALPLRNWN-RKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSV 235

Query: 266 NL 267
           +L
Sbjct: 236 DL 237

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 45.9 bits (107), Expect = 2e-06
 Identities = 27/253 (10%), Positives = 62/253 (24%), Gaps = 15/253 (5%)

Query: 12  HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQ 71
            S       + ++S A +  G ++ +          H               G      +
Sbjct: 80  LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVR 139

Query: 72  LCWDPKHADLIATASGDKTV------RLWDARSGKCSQQAELSGENINITYKPDGTHIAV 125
               P+   L+  A               D ++GK +    L   N      PD  +   
Sbjct: 140 TFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWP 199

Query: 126 GNRDDELTILDVRKFKPIHRRKFGYEVNEIAW-------NMTGEMFFLTTGNAGCYCIAI 178
                    +     +    ++     + +                         +    
Sbjct: 200 HQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLR 259

Query: 179 DPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDI 238
            P       G  +  ++ +D+ +   ++    L+     ++F   GD +        + +
Sbjct: 260 SPKDPNQIYGVLNR-LAKYDLKQRKLIKAA-NLDHTYYCVAFDKKGDKLYLGGTFNDLAV 317

Query: 239 SNVHTGRTVHQIP 251
            N  T   V  I 
Sbjct: 318 FNPDTLEKVKNIK 330

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 43.6 bits (101), Expect = 2e-05
 Identities = 10/105 (9%), Positives = 35/105 (33%), Gaps = 7/105 (6%)

Query: 11  LHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVD 70
            H++E+    +   +   +        G        + ++     K+       H  +  
Sbjct: 242 THTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLK---QRKLIKAANLDH--TYY 295

Query: 71  QLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINIT 115
            + +D    D +        + +++  + +  +  +L G +++ T
Sbjct: 296 CVAFDK-KGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGGDMSTT 339

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 40.1 bits (92), Expect = 2e-04
 Identities = 13/117 (11%), Positives = 33/117 (28%), Gaps = 4/117 (3%)

Query: 176 IAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT-KLEWPVRTISFSHTGDYI-ASASED 233
            A+     Y  V +  + + + D++     ++     ++   T   +          +  
Sbjct: 2   PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY 61

Query: 234 LFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGF 290
             I   ++ T +        +    V  +      A + D K  Y       R+   
Sbjct: 62  GDIYGIDLDTCKNTFHANLSSVPGEVGRSMYS--FAISPDGKEVYATVNPTQRLNDH 116

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 56.1 bits (133), Expect = 1e-09
 Identities = 31/259 (11%), Positives = 62/259 (23%), Gaps = 35/259 (13%)

Query: 13  SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQL 72
           +  YT H  +      + +G   ASG V    R+W      H     I     +  V  +
Sbjct: 51  TEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTI--PVFSGPVKDI 108

Query: 73  CWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDEL 132
            WD +   + A   G +            S            +     +         + 
Sbjct: 109 SWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDD 168

Query: 133 TIL--------------------------------DVRKFKPIHRRKFGYEVNEIAWNMT 160
             +                                            +            
Sbjct: 169 NTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFE 228

Query: 161 GEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF-TKLEWPVRTIS 219
            +       +   + +   P G   A  SAD  + +W+++ +   +T         + + 
Sbjct: 229 DDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLG 288

Query: 220 FSHTGDYIASASEDLFIDI 238
              T   + S S + FI+ 
Sbjct: 289 IIWTKQALVSISANGFINF 307

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 47.2 bits (110), Expect = 8e-07
 Identities = 12/92 (13%), Positives = 24/92 (26%), Gaps = 1/92 (1%)

Query: 174 YCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASED 233
             +   P G      +  S V    +  +     +T+          S +G Y AS    
Sbjct: 21  VVLGNTPAGDKIQYCNGTS-VYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVH 79

Query: 234 LFIDISNVHTGRTVHQIPCRAAMNSVEWNPKY 265
             + I +      + +         V+     
Sbjct: 80  GNVRIWDTTQTTHILKTTIPVFSGPVKDISWD 111

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 45.3 bits (105), Expect = 3e-06
 Identities = 17/77 (22%), Positives = 32/77 (41%), Gaps = 4/77 (5%)

Query: 19  HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKH 78
           H   V  + W+  GTK+AS S D+T ++W++      KV+   +       DQ       
Sbjct: 237 HSGSVFGLTWSPDGTKIASASADKTIKIWNVA---TLKVEK-TIPVGTRIEDQQLGIIWT 292

Query: 79  ADLIATASGDKTVRLWD 95
              + + S +  +   +
Sbjct: 293 KQALVSISANGFINFVN 309

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.4 bits (95), Expect = 6e-05
 Identities = 9/66 (13%), Positives = 25/66 (37%), Gaps = 2/66 (3%)

Query: 73  CWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENIN--ITYKPDGTHIAVGNRDD 130
                    IA+AS DKT+++W+  + K  +   +     +  +        +   + + 
Sbjct: 244 LTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANG 303

Query: 131 ELTILD 136
            +  ++
Sbjct: 304 FINFVN 309

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 56.0 bits (134), Expect = 1e-09
 Identities = 16/151 (10%), Positives = 35/151 (23%), Gaps = 20/151 (13%)

Query: 81  LIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKF 140
              T      + L D  + +     +             G ++ V  RD ++ ++D+   
Sbjct: 34  FSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMK 93

Query: 141 KP--IHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAV-GSADSLVSLW 197
           +P  +   K G E   I                           +Y            + 
Sbjct: 94  EPTTVAEIKIGSEARSIET-----------------SKMEGWEDKYAIAGAYWPPQYVIM 136

Query: 198 DISEMLCVRTFTKLEWPVRTISFSHTGDYIA 228
           D   +   +  +          +       A
Sbjct: 137 DGETLEPKKIQSTRGMTYDEQEYHPEPRVAA 167

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 48.6 bits (115), Expect = 4e-07
 Identities = 24/232 (10%), Positives = 55/232 (23%), Gaps = 37/232 (15%)

Query: 21  KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIE-LRGHADSVDQLCWDPKHA 79
             VH    + +G  L     D    +  +       V +I+                +  
Sbjct: 62  YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDK 121

Query: 80  DLIATASGDKTVRLWDARSGKCSQQAELSGENIN------------ITYKPDGTHIAVGN 127
             IA A       + D  + +  +     G   +            I          V  
Sbjct: 122 YAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNV 181

Query: 128 RDD-ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFA 186
           ++  ++ ++D      +   +                          +   +D   RYF 
Sbjct: 182 KETGKILLVDYTDLNNLKTTEI----------SAER---------FLHDGGLDGSHRYFI 222

Query: 187 VGSADSLVSLWDISEMLCVRTF----TKLEWPVRTISFSHTGDYIASASEDL 234
             +      +   ++   +        +   P R  +F H       A+  +
Sbjct: 223 TAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHM 274

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 37.5 bits (86), Expect = 0.001
 Identities = 14/111 (12%), Positives = 28/111 (25%), Gaps = 7/111 (6%)

Query: 175 CIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDL 234
               D    +         ++L D S                    S +G Y+     D 
Sbjct: 25  MNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAV-HISRLSASGRYLFVIGRDG 83

Query: 235 FIDISNVHTG--RTVHQIP----CRAAMNSVEWNPKYNLLAYAGDDKNKYQ 279
            +++ ++      TV +I      R+   S     +            +Y 
Sbjct: 84  KVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYV 134

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 52.9 bits (125), Expect = 1e-08
 Identities = 20/231 (8%), Positives = 48/231 (20%), Gaps = 15/231 (6%)

Query: 14  REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
            ++T                    G V Q   V+ +E                   D   
Sbjct: 131 TDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSH------DYAP 184

Query: 74  WDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELT 133
                +  +   S        D      S +         +     G+          +T
Sbjct: 185 AFDADSKNLYYLSYRSLDPSPDRVVLNFSFE---VVSKPFVIPLIPGSPNPTKLVPRSMT 241

Query: 134 ILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSL 193
                    ++          +       +  L +               Y+       +
Sbjct: 242 SEAGEYD--LNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGV 299

Query: 194 VSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTG 244
           +  +D+      R  T+++  +  +  S     +    +D  I    +   
Sbjct: 300 LLKYDVKT----RKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKP 346

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 47.9 bits (112), Expect = 6e-07
 Identities = 19/206 (9%), Positives = 39/206 (18%), Gaps = 34/206 (16%)

Query: 12  HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHI---EPHGHGKVKDIELRGHADS 68
                T      ++ A++     L   S                     K   +     S
Sbjct: 170 KIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGS 229

Query: 69  VDQLCWDPKHADL----IATASGDKTVRLWDARSGKCSQQAELSGENINITYK---PDGT 121
            +     P+               K     +   G       L    +  +         
Sbjct: 230 PNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAA 289

Query: 122 HIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPM 181
           +         L   DV+  K                        +T        + +   
Sbjct: 290 YYQGAPEKGVLLKYDVKTRK------------------------VTEVKNNLTDLRLSAD 325

Query: 182 GRYFAVGSADSLVSLWDISEMLCVRT 207
            +   V   D  +  + + +    RT
Sbjct: 326 RKTVMVRKDDGKIYTFPLEKPEDERT 351

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 47.5 bits (111), Expect = 8e-07
 Identities = 3/95 (3%), Positives = 17/95 (17%), Gaps = 9/95 (9%)

Query: 18  GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK 77
                                        + ++          ++    +++  L     
Sbjct: 274 SSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR--------KVTEVKNNLTDLRLSA- 324

Query: 78  HADLIATASGDKTVRLWDARSGKCSQQAELSGENI 112
               +     D  +  +     +  +  E     +
Sbjct: 325 DRKTVMVRKDDGKIYTFPLEKPEDERTVETDKRPL 359

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 42.2 bits (97), Expect = 4e-05
 Identities = 23/274 (8%), Positives = 51/274 (18%), Gaps = 29/274 (10%)

Query: 17  TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDP 76
                ++  V               +   +   +                    +   + 
Sbjct: 39  VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKA--------------EKFEEN 84

Query: 77  KHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILD 136
                      +    +      +       +G+   I    +         D+   I  
Sbjct: 85  LGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAY 144

Query: 137 VRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSL 196
               K      +  +   +      ++F  TT N+  Y  A D   +     S  SL   
Sbjct: 145 GFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPS 204

Query: 197 WDISEMLC-------VRTFTKLEWPVRTISFSHTGDYIASAS-----EDLFIDISNVHTG 244
            D   +               +                 +               NV  G
Sbjct: 205 PDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPG 264

Query: 245 RTVHQIPCRAAMNSVEW---NPKYNLLAYAGDDK 275
                IP  +++                 A +  
Sbjct: 265 DYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKG 298

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 40.6 bits (93), Expect = 1e-04
 Identities = 6/62 (9%), Positives = 21/62 (33%)

Query: 2   GESSIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIE 61
            +  +   ++ +R+ T  K  +  +  +     +     D     + +E     +  + +
Sbjct: 296 EKGVLLKYDVKTRKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVETD 355

Query: 62  LR 63
            R
Sbjct: 356 KR 357

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 52.7 bits (125), Expect = 2e-08
 Identities = 22/253 (8%), Positives = 43/253 (16%), Gaps = 16/253 (6%)

Query: 32  GTKLASGSVDQTARVWHI---EPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD 88
             + A G       V+      P    ++ D         V  +      A L+    G 
Sbjct: 86  FARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGS 145

Query: 89  KTVRLWDARSGKCSQQAEL--------SGENINITYKPDGTHIAVGNRDDELTILDVRKF 140
                         Q  +              +       +  A            V   
Sbjct: 146 SAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQ 205

Query: 141 KPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDIS 200
               +            N  G + +    +       I   G         +       +
Sbjct: 206 CTGAQNCS---SQAAQANYPGMLVWAVASSI--LQGDIPAAGATMKAAIDGNESGRKADN 260

Query: 201 EMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVE 260
                            I         +  +            G+T   I      +++ 
Sbjct: 261 FRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAII 320

Query: 261 WNPKYNLLAYAGD 273
                    YA  
Sbjct: 321 AAQDGASDNYANS 333

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 38.4 bits (88), Expect = 6e-04
 Identities = 13/122 (10%), Positives = 34/122 (27%), Gaps = 11/122 (9%)

Query: 6   IPFKNLHSREYTGHKKKVHSVAWNCTGTKL-------ASGSVDQTARVWHIEPHGHGKVK 58
           I       +           VA       +       +   +        +         
Sbjct: 249 IDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSG 308

Query: 59  DIELRGHADSVDQLCWDPK-HADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYK 117
            I     +D++          +D  A ++G + + ++DA S +     EL     +++ +
Sbjct: 309 PISNGHDSDAII---AAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGPESLSVQ 365

Query: 118 PD 119
            +
Sbjct: 366 NE 367

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 36.5 bits (83), Expect = 0.003
 Identities = 14/199 (7%), Positives = 45/199 (22%), Gaps = 32/199 (16%)

Query: 22  KVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADL 81
                  +C  +  AS      A    +        ++   +    +   +      + +
Sbjct: 175 AATHYLGSCPASLAASDLAAAPAAAGIVGAQ-CTGAQNCSSQAAQANYPGMLVWAVASSI 233

Query: 82  IATASGDKTVRLWDARSGKCSQQAEL---SGENINITYKPDGTHIAVGNRDD-------- 130
           +          +  A  G  S +      S     +    +   I +   +         
Sbjct: 234 LQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAA 293

Query: 131 -ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGS 189
              + +     +       G++ + I     G                       +A  +
Sbjct: 294 ENTSSVTASVGQTSGPISNGHDSDAIIAAQDGA-------------------SDNYANSA 334

Query: 190 ADSLVSLWDISEMLCVRTF 208
              ++ ++D +      + 
Sbjct: 335 GTEVLDIYDAASDQDQSSV 353

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.8 bits (122), Expect = 2e-08
 Identities = 43/287 (14%), Positives = 85/287 (29%), Gaps = 37/287 (12%)

Query: 17  TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDP 76
           +   K V+ + ++    K+ SG  D T ++W        ++    L GH  SV  L +D 
Sbjct: 12  SETSKGVYCLQYD--DQKIVSGLRDNTIKIWDKNTLECKRI----LTGHTGSVLCLQYDE 65

Query: 77  KHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGN--------- 127
           +     ++ S  +   +              +  ++        T     +         
Sbjct: 66  RVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASP 125

Query: 128 --------RDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAID 179
                          ++V  F   +      +     WN +   F  T          + 
Sbjct: 126 TDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQ 185

Query: 180 PMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDIS 239
              R    GS+D+ + LWDI    C+R     E  VR I F +    I S + D  I + 
Sbjct: 186 YRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN--KRIVSGAYDGKIKVW 243

Query: 240 NVHTGRTVHQIPC----------RAAMNSVEWNPKYNLLAYAGDDKN 276
           ++                        +  ++++     +  +  D  
Sbjct: 244 DLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQ--IVSSSHDDT 288

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.4 bits (121), Expect = 4e-08
 Identities = 31/236 (13%), Positives = 71/236 (30%), Gaps = 29/236 (12%)

Query: 64  GHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHI 123
             +  V  L +D +    I +   D T+++WD  + +C  +  L+G   ++        +
Sbjct: 13  ETSKGVYCLQYDDQK---IVSGLRDNTIKIWDKNTLEC--KRILTGHTGSVLCLQYDERV 67

Query: 124 AVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGC---------- 173
            +    D    +       +      +    +       M    + +             
Sbjct: 68  IITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTD 127

Query: 174 ------------YCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFS 221
                           +D   +Y    S D  + +W+ S    VRT    +  +  + + 
Sbjct: 128 ITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR 187

Query: 222 HTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNK 277
                + S S D  I + ++  G  +  +     +          +++ A D K K
Sbjct: 188 --DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIK 241

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (112), Expect = 4e-07
 Identities = 16/89 (17%), Positives = 31/89 (34%), Gaps = 8/89 (8%)

Query: 12  HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIE-----LRGHA 66
            +        +           ++ SG+ D   +VW +      +          L  H+
Sbjct: 208 GACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHS 267

Query: 67  DSVDQLCWDPKHADLIATASGDKTVRLWD 95
             V +L +D      I ++S D T+ +WD
Sbjct: 268 GRVFRLQFDEFQ---IVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (104), Expect = 4e-06
 Identities = 32/171 (18%), Positives = 57/171 (33%), Gaps = 21/171 (12%)

Query: 28  WNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASG 87
            +     + S S D+T +VW+       +     L GH   +  L +  +    + + S 
Sbjct: 144 VDFDDKYIVSASGDRTIKVWNTSTCEFVRT----LNGHKRGIACLQYRDRL---VVSGSS 196

Query: 88  DKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK 147
           D T+RLWD   G C +  E   E +    + D   I  G  D ++ + D+          
Sbjct: 197 DNTIRLWDIECGACLRVLE-GHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPA 255

Query: 148 FGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWD 198
               +             L   +   + +  D         S D  + +WD
Sbjct: 256 GTLCLRT-----------LVEHSGRVFRLQFD--EFQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (89), Expect = 4e-04
 Identities = 24/129 (18%), Positives = 41/129 (31%), Gaps = 15/129 (11%)

Query: 16  YTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWD 75
            T +  K            + SGS D T R+W IE           LR      + +   
Sbjct: 172 RTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGAC-------LRVLEGHEELVRCI 224

Query: 76  PKHADLIATASGDKTVRLWDARSGKCSQQ-------AELSGENINITY-KPDGTHIAVGN 127
                 I + + D  +++WD  +    +          L   +  +   + D   I   +
Sbjct: 225 RFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSS 284

Query: 128 RDDELTILD 136
            DD + I D
Sbjct: 285 HDDTILIWD 293

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.4 bits (121), Expect = 4e-08
 Identities = 44/254 (17%), Positives = 93/254 (36%), Gaps = 11/254 (4%)

Query: 17  TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDP 76
            GH   V +         + +G+ D+  RV+              L GH   V  L +  
Sbjct: 9   RGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLLQ----LSGHDGGVWALKYAH 63

Query: 77  KHADLIATASGDKTVRLWDARS---GKCSQQAELSGENINITYKPDGTHIAVGNRDDELT 133
               ++ + S D+TVR+WD +        +    +   ++I    +  +I  G+RD+ L 
Sbjct: 64  GG--ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLH 121

Query: 134 ILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCI-AIDPMGRYFAVGSADS 192
           +  + K   +      ++   +        +F+         +  +   G     GS D+
Sbjct: 122 VWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDN 181

Query: 193 LVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPC 252
            + +WD+++M C+   +     + +  + H      SAS D  I I ++  G  ++ +  
Sbjct: 182 TLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQG 241

Query: 253 RAAMNSVEWNPKYN 266
             A+  +       
Sbjct: 242 HTALVGLLRLSDKF 255

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.0 bits (112), Expect = 5e-07
 Identities = 50/306 (16%), Positives = 93/306 (30%), Gaps = 46/306 (15%)

Query: 14  REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
            + +GH   V ++ +   G  L SGS D+T RVW I+      V +              
Sbjct: 47  LQLSGHDGGVWALKY-AHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTV---RCLDI 102

Query: 74  WDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPD-------------- 119
            + K+   I T S D T+ +W               +   + + P+              
Sbjct: 103 VEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMA 162

Query: 120 --------GTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFF------ 165
                   G  +  G+ D+ L + DV + K ++      +                    
Sbjct: 163 SVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMD 222

Query: 166 ------------LTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEW 213
                       L     G   +          + SA +  S+         R F+    
Sbjct: 223 TTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHT 282

Query: 214 PVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPC--RAAMNSVEWNPKYNLLAYA 271
            +  I+  +  D I  +  +   +I N+ +G+ VH         + SV +  K  + A  
Sbjct: 283 NLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAAVE 342

Query: 272 GDDKNK 277
            D ++ 
Sbjct: 343 KDGQSF 348

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.2 bits (110), Expect = 9e-07
 Identities = 27/162 (16%), Positives = 48/162 (29%), Gaps = 22/162 (13%)

Query: 62  LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENIN-ITYKPDG 120
           LRGH  SV   C      + + T + DK +R++D+ + K   Q       +  + Y   G
Sbjct: 8   LRGHMTSV-ITCLQF-EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG 65

Query: 121 THIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDP 180
             ++                           V +I       +F        C  I    
Sbjct: 66  ILVSGSTDRT-------------------VRVWDIKKGCCTHVFEGHNSTVRCLDIVEYK 106

Query: 181 MGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSH 222
             +Y   GS D+ + +W + +   V    +            
Sbjct: 107 NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPE 148

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 51.1 bits (121), Expect = 7e-08
 Identities = 25/190 (13%), Positives = 50/190 (26%), Gaps = 18/190 (9%)

Query: 74  WDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELT 133
            D  +     T      + L D  S K  +  +             G ++ V  RD  + 
Sbjct: 28  LDLPNL-FSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARID 86

Query: 134 ILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGS-ADS 192
           ++D+   +P    +    +   +                          RY   G+    
Sbjct: 87  MIDLWAKEPTKVAEIKIGIEARSV---------------ESSKFKGYEDRYTIAGAYWPP 131

Query: 193 LVSLWDISEMLCVRTFTKLEWPVRTISFSHTGD-YIASASEDLFIDISNVHTGRTVHQIP 251
             ++ D   +   +  +     V T ++          AS +    I NV     V  + 
Sbjct: 132 QFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVN 191

Query: 252 CRAAMNSVEW 261
            +   N    
Sbjct: 192 YKDIDNLTVT 201

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 41.5 bits (96), Expect = 7e-05
 Identities = 15/93 (16%), Positives = 27/93 (29%), Gaps = 3/93 (3%)

Query: 176 IAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLF 235
             +D    +         ++L D      V+              S +G Y+     D  
Sbjct: 26  NDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAV-HISRMSASGRYLLVIGRDAR 84

Query: 236 IDISNVHTGR--TVHQIPCRAAMNSVEWNPKYN 266
           ID+ ++       V +I       SVE +    
Sbjct: 85  IDMIDLWAKEPTKVAEIKIGIEARSVESSKFKG 117

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 38.4 bits (88), Expect = 6e-04
 Identities = 34/217 (15%), Positives = 62/217 (28%), Gaps = 12/217 (5%)

Query: 23  VHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIE-LRGHADSVDQLCWDPKHADL 81
           VH    + +G  L     D    +  +      KV +I+                +    
Sbjct: 64  VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYT 123

Query: 82  IATASGDKTVRLWDARSGKCSQQAELSGENINI-TYKPDGTHIAVGNRDDELTILDVRKF 140
           IA A       + D  + +  Q     G  ++  TY P+    A+    +    +   K 
Sbjct: 124 IAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE 183

Query: 141 KPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDIS 200
                     +++ +     G   FL            D   RYF   + +S       S
Sbjct: 184 TGKVLLVNYKDIDNLTVTSIGAAPFL-------ADGGWDSSHRYFMTAANNSNKVAVIDS 236

Query: 201 E---MLCVRTFTKLEWPVRTISFSHTGDYIASASEDL 234
           +   +  +    K   P R  +F H       ++  L
Sbjct: 237 KDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHL 273

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 48.4 bits (113), Expect = 3e-07
 Identities = 37/292 (12%), Positives = 80/292 (27%), Gaps = 35/292 (11%)

Query: 14  REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
           +   GH K + +++ +  G  L S   +     W I     G    +    HA  +  + 
Sbjct: 6   QVRYGHNKAITALSSSADGKTLFSADAEGHINSWDIS---TGISNRVFPDVHATMITGIK 62

Query: 74  WDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELT 133
              K    + T S D  +++  A          ++ +  +       +            
Sbjct: 63  TTSKGD--LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYK 120

Query: 134 ILDVRKFKPIHRRKFGYEVNEIAW-------------------------NMTGEMFFLTT 168
            + +     +      Y  + +A                              +      
Sbjct: 121 HIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPA 180

Query: 169 GNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIA 228
                                     S+ +  E+    ++T     V  +S+S     +A
Sbjct: 181 EITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLA 240

Query: 229 SASEDLFIDISNVHTGRTVHQI----PCRAAMNSVEWNPKYNLLAYAGDDKN 276
           + S D  + + N++       I       +++NSV W  +   +  AG D N
Sbjct: 241 TGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNE-TTIVSAGQDSN 291

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.1 bits (94), Expect = 8e-05
 Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 3/84 (3%)

Query: 12  HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQ 71
           H+  +T H  KV  V+W+    +LA+GS+D +  VW++          I+      SV+ 
Sbjct: 216 HTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMN-KPSDHPIIIKGAHAMSSVNS 274

Query: 72  LCWDPKHADLIATASGDKTVRLWD 95
           + W  +    I +A  D  ++ W+
Sbjct: 275 VIWLNET--TIVSAGQDSNIKFWN 296

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 36.1 bits (81), Expect = 0.003
 Identities = 18/87 (20%), Positives = 31/87 (35%), Gaps = 2/87 (2%)

Query: 157 WNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVR 216
                     T   A   C++  P     A GS D+ V +W++++        K    + 
Sbjct: 211 NFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMS 270

Query: 217 TIS--FSHTGDYIASASEDLFIDISNV 241
           +++         I SA +D  I   NV
Sbjct: 271 SVNSVIWLNETTIVSAGQDSNIKFWNV 297

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.0 bits (112), Expect = 5e-07
 Identities = 40/267 (14%), Positives = 71/267 (26%), Gaps = 42/267 (15%)

Query: 9   KNLHSREYTGHKKK-VHSVAW--NCTGTKLASGSVDQTARVWHIEPHGHGKV----KDIE 61
           K     ++TGH    V +V +        L SG       VW                 E
Sbjct: 51  KVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSE 110

Query: 62  LRGHADSVDQLCWDPK-HADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDG 120
            +  A  +  + WD +     +     D         SG    +     + IN  +    
Sbjct: 111 FQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQS 170

Query: 121 THIAV-------------------------------GNRDDELTILDVRKFKPIHRRKFG 149
             +                                   RD E +         +   +  
Sbjct: 171 RPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKI 230

Query: 150 YEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT 209
              +  +      +        G          + FA   AD+ + +WD++   CV+ +T
Sbjct: 231 SCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWT 290

Query: 210 --KLEWPVRTISFSHTGD-YIASASED 233
             K +   + +    TG+  I S S D
Sbjct: 291 LDKQQLGNQQVGVVATGNGRIISLSLD 317

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.3 bits (105), Expect = 4e-06
 Identities = 18/130 (13%), Positives = 34/130 (26%), Gaps = 5/130 (3%)

Query: 12  HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQ 71
             R +      V  V ++    +                  G       + +        
Sbjct: 197 SDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIF 256

Query: 72  LCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINIT----YKPDGTHIAVGN 127
                  +   AT   D T+R+WD  + KC Q+  L  + +              I   +
Sbjct: 257 ALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLS 315

Query: 128 RDDELTILDV 137
            D  L   ++
Sbjct: 316 LDGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.2 bits (97), Expect = 4e-05
 Identities = 25/274 (9%), Positives = 63/274 (22%), Gaps = 3/274 (1%)

Query: 4   SSIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELR 63
           SSI  K +   + +  +     ++++ T   +A         V  ++         ++  
Sbjct: 1   SSISLKEIIPPQPSTQRNFTTHLSYDPTTNAIAYPCGKSAF-VRCLDDGDSKVPPVVQFT 59

Query: 64  GH-ADSVDQLCWDPKH-ADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGT 121
           GH +  V  + + P   +  + +      V +W     K S   E++ ++         +
Sbjct: 60  GHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPIS 119

Query: 122 HIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPM 181
            I+       L ++   +        +    +    +   +              ++   
Sbjct: 120 DISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVG 179

Query: 182 GRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNV 241
                V                  +     +      S        +      F   S  
Sbjct: 180 DDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE 239

Query: 242 HTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDK 275
                                      A  G D 
Sbjct: 240 FLKYIEDDQEPVQGGIFALSWLDSQKFATVGADA 273

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.4 bits (82), Expect = 0.003
 Identities = 17/119 (14%), Positives = 35/119 (29%), Gaps = 6/119 (5%)

Query: 167 TTGNAGCYCIAIDPMGRYFAVGSADS-LVSLWDISE--MLCVRTFTK-LEWPVRTISFS- 221
           +T       ++ DP     A     S  V   D  +  +  V  FT      V T+ FS 
Sbjct: 14  STQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSP 73

Query: 222 -HTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQ 279
                Y+ S  E   + +      +  + +               + +++  + +    
Sbjct: 74  IKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCV 132

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.5 bits (108), Expect = 1e-06
 Identities = 12/84 (14%), Positives = 30/84 (35%), Gaps = 5/84 (5%)

Query: 12  HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQ 71
                +    +  +         +A+GS+D    ++ ++           L  H D V+ 
Sbjct: 207 KINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVK---RPMKIIKALNAHKDGVNN 263

Query: 72  LCWDPKHADLIATASGDKTVRLWD 95
           L W+      + ++  D  ++ W+
Sbjct: 264 LLWETPS--TLVSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.9 bits (96), Expect = 4e-05
 Identities = 32/288 (11%), Positives = 71/288 (24%), Gaps = 39/288 (13%)

Query: 14  REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
           +  +GH K + ++  N     L SGS D     W               + H++ +  L 
Sbjct: 7   KTISGHNKGITALTVN----PLISGSYDGRIMEWSSSS---------MHQDHSNLIVSLD 53

Query: 74  WDPKHADLIAT-ASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDEL 132
                     +     K   +     G   + A  + +        D   + + +   ++
Sbjct: 54  NSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDI 113

Query: 133 TILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADS 192
                              V            F  +     + +      +   +  + S
Sbjct: 114 IKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPS 173

Query: 193 LVSLWDISEMLCVRTFTKLEWP----------------------VRTISFSHTGDYIASA 230
              +     M  +  +                                      D +A+ 
Sbjct: 174 ETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATG 233

Query: 231 SEDLFIDISNVHTGRTVHQIPC--RAAMNSVEWNPKYNLLAYAGDDKN 276
           S D  I I +V     + +     +  +N++ W    + L  +G D  
Sbjct: 234 SLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETP-STLVSSGADAC 280

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.3 bits (92), Expect = 1e-04
 Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 6/50 (12%)

Query: 53  GHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCS 102
           GH +V    + GH   +  L  +P     + + S D  +  W + S    
Sbjct: 1   GHDEVLKT-ISGHNKGITALTVNP-----LISGSYDGRIMEWSSSSMHQD 44

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 46.3 bits (108), Expect = 2e-06
 Identities = 24/208 (11%), Positives = 56/208 (26%), Gaps = 9/208 (4%)

Query: 24  HSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELR--GHADSVDQLCWDPKHADL 81
               +            D +         G  ++   E+        ++   +    A  
Sbjct: 150 CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQ-KAGR 208

Query: 82  IATASGDKTVRLWDARSGKCSQQAELSGEN---INITYKPDGTHIAVGNRDDELTILDVR 138
           +   +    +   D  SG       +           ++P G      +R  +   L V 
Sbjct: 209 LVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVD 268

Query: 139 KFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRY--FAVGSADSLVSL 196
           +      +     V  +    TGE             I +    +   +A+ + D  + +
Sbjct: 269 QRDEWRHKTASRFVVVL-DAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYI 327

Query: 197 WDISEMLCVRTFTKLEWPVRTISFSHTG 224
            D      +R+  +L    + I+ +  G
Sbjct: 328 HDAESGEELRSVNQLGHGPQVITTADMG 355

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 45.9 bits (107), Expect = 3e-06
 Identities = 18/121 (14%), Positives = 39/121 (32%), Gaps = 7/121 (5%)

Query: 2   GESSIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIE 61
            E +  ++    ++   H+             +    +  +   V   +       + + 
Sbjct: 240 AERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTG-----ERLA 294

Query: 62  LRGHADSVDQLCWDP-KHADLIATASGDKTVRLWDARSGKCSQQAELSGENIN-ITYKPD 119
                  +D +     +   L A ++GDKT+ + DA SG+  +     G     IT    
Sbjct: 295 KFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADM 354

Query: 120 G 120
           G
Sbjct: 355 G 355

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 44.8 bits (104), Expect = 5e-06
 Identities = 26/212 (12%), Positives = 49/212 (23%), Gaps = 18/212 (8%)

Query: 82  IATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAV----------GNRDDE 131
            A  +      + D  +G+     +  G   N     DG+ IA           G R D 
Sbjct: 21  PAHFAAVTQQFVIDGEAGRVIGMID-GGFLPNPVVADDGSFIAHASTVFSRIARGERTDY 79

Query: 132 LTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSAD 191
           + + D     P    +       +             G    +                 
Sbjct: 80  VEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGK 139

Query: 192 SLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP 251
           +   + D+ +   +        P         G     A      + +   T   V    
Sbjct: 140 AFKRMLDVPDCYHIFPT----APDTFFMHCRDGSLAKVAFGT---EGTPEITHTEVFHPE 192

Query: 252 CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEG 283
               +N   ++ K   L +       +Q D  
Sbjct: 193 DEFLINHPAYSQKAGRLVWPTYTGKIHQIDLS 224

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 44.0 bits (102), Expect = 1e-05
 Identities = 19/148 (12%), Positives = 42/148 (28%), Gaps = 19/148 (12%)

Query: 17  TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDP 76
              +  ++  A++    +L   +         +       +  +E    A+  D      
Sbjct: 191 PEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGG 250

Query: 77  KHA-----------------DLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPD 119
                               D     +  + V + DA++G+   + E+  E  +I    D
Sbjct: 251 WQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQD 310

Query: 120 GTH--IAVGNRDDELTILDVRKFKPIHR 145
                 A+   D  L I D    + +  
Sbjct: 311 EKPLLYALSTGDKTLYIHDAESGEELRS 338

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

 Score = 43.0 bits (101), Expect = 2e-05
 Identities = 23/239 (9%), Positives = 56/239 (23%), Gaps = 11/239 (4%)

Query: 36  ASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWD 95
             G  +++  +          +       H    D   +D K+  L      +  V    
Sbjct: 47  GWGITNESKEILGG---DQQYLNGDCHHPHISMTDGR-YDGKY--LFINDKANTRVARIR 100

Query: 96  ARSGKCSQQAEL--SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVN 153
               K  +   +        +  +       V    + +                 Y + 
Sbjct: 101 LDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGT--DFSLDNSYTMF 158

Query: 154 EIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEW 213
                 T ++ +    +        D  G+Y      +S  ++     M   R +  +  
Sbjct: 159 TAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFN 218

Query: 214 PVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAG 272
             R  +    G++       +   +           IP     + +  +P        G
Sbjct: 219 VERIAAAVKAGNFKTIGDSKV-PVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANG 276

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

 Score = 40.3 bits (94), Expect = 2e-04
 Identities = 27/240 (11%), Positives = 56/240 (23%), Gaps = 53/240 (22%)

Query: 45  RVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL----------- 93
           RV  I      K   I    +  ++  L             + +  +             
Sbjct: 95  RVARIRLD-IMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDN 153

Query: 94  -------WDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDE-LTILD-----VRKF 140
                   DA +   + Q  + G   N      G +      + E    L       R +
Sbjct: 154 SYTMFTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDW 213

Query: 141 KPIHRRKFGYEVNE---------------IAWNMTGEMFFLTTGNAGCYCIAIDPMGRYF 185
             +   +      +                    +    ++       + +   P G+YF
Sbjct: 214 VVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPKNP-HGLNTSPDGKYF 272

Query: 186 AV-GSADSLVSLWDISEML-----------CVRTFTKLEWPVRTISFSHTGDYIASASED 233
              G     VS+  I ++             +    +L       +F   G+   +   D
Sbjct: 273 IANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFID 332

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 42.6 bits (98), Expect = 3e-05
 Identities = 16/83 (19%), Positives = 31/83 (37%), Gaps = 1/83 (1%)

Query: 84  TASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGN-RDDELTILDVRKFKP 142
             S    + + D  S K +    +    +     PDGT + V N   ++++I+D      
Sbjct: 7   ANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV 66

Query: 143 IHRRKFGYEVNEIAWNMTGEMFF 165
           I     G     +A +  G+  +
Sbjct: 67  IATVPAGSSPQGVAVSPDGKQVY 89

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	293
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.97
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.97
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.97
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.96
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.95
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.94
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.93
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.93
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.93
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.92
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.92
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.91
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.91
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.91
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.91
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.89
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.85
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.84
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.83
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.82
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.79
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.74
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.72
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.71
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.64
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.58
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.55
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.49
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.48
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.48
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.44
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.28
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.23
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.22
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.19
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.15
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.1
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.1
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.03
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.79
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.79
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.75
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.72
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.7
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.58
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.43
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.37
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.36
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.34
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.28
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.26
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	97.98
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.73
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.66
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.38
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	96.66
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.34
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	96.31
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	96.16
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	95.96
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	95.94
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	95.8
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.21
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	94.81
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	94.79
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	94.63
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	94.57
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	94.48
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	92.15
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	92.14
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	92.1
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	89.69
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	88.67
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	87.47
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	87.11
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	86.13
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	82.73

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-40  Score=279.21  Aligned_cols=262  Identities=15%  Similarity=0.218  Sum_probs=218.7

Q ss_pred             CccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCC-ceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeC
Q 022716           18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHG-KVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDA   96 (293)
Q Consensus        18 ~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~-~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~   96 (293)
                      +|...|.|++|+|+|++|+||+ ||.|+|||+...... ........+|.+.|.+++|+|++ .+|++|+.|+.|++||+
T Consensus        49 ~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg-~~l~s~~~dg~i~iwd~  126 (337)
T d1gxra_          49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG-CTLIVGGEASTLSIWDL  126 (337)
T ss_dssp             CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTS-SEEEEEESSSEEEEEEC
T ss_pred             CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCC-CEEEEeecccccccccc
Confidence            8999999999999999999987 899999999754322 22334456899999999999974 68999999999999998


Q ss_pred             CCCee--eeeeee-cCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeec-ccceeeeeEEecCCCEEEEecC---
Q 022716           97 RSGKC--SQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTG---  169 (293)
Q Consensus        97 ~~~~~--~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~---  169 (293)
                      .....  ...+.. ...+..++++|++..+++++.|+.+.+||+++.+...... +...+..+.|++.+..+.....   
T Consensus       127 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~  206 (337)
T d1gxra_         127 AAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNT  206 (337)
T ss_dssp             CCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            75543  333333 3445678899999999999999999999999877655543 4566788888887766554432   


Q ss_pred             -----------------CCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecC
Q 022716          170 -----------------NAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASE  232 (293)
Q Consensus       170 -----------------~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~  232 (293)
                                       ...+.+++++|+++++++|+.|+.+++||+++.... ....|..+|.+++|+|++++|++|+.
T Consensus       207 v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~i~~v~~s~~g~~l~s~s~  285 (337)
T d1gxra_         207 VRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGK  285 (337)
T ss_dssp             EEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             ccccccccceeecccccccceEEEEEcccccccceeccccccccccccccccc-cccccccccceEEECCCCCEEEEEeC
Confidence                             345788999999999999999999999999988765 45678899999999999999999999


Q ss_pred             CCcEEEEEcCCCCEEEEEecCCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEee
Q 022716          233 DLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGF  290 (293)
Q Consensus       233 d~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~  290 (293)
                      |+.|++||..+++.+..+.+..+|.+++|+|++++||+|+.|+        .+|||++
T Consensus       286 Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~s~D~--------~I~vWdl  335 (337)
T d1gxra_         286 DNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDK--------KATVYEV  335 (337)
T ss_dssp             TSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTS--------CEEEEEE
T ss_pred             CCeEEEEECCCCCEEEEccCCCCEEEEEEeCCCCEEEEEeCCC--------eEEEEEE
Confidence            9999999999999998888889999999999999999999884        6777775

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=5.3e-39  Score=266.38  Aligned_cols=249  Identities=20%  Similarity=0.268  Sum_probs=204.3

Q ss_pred             cceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeC--CC
Q 022716           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASG--DK   89 (293)
Q Consensus        12 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~--d~   89 (293)
                      ..+.+.+|.+.|++++|+|+|++||+|+.||+|++||+....  ......+.+|..+|.+++|+|++ .+|++++.  +.
T Consensus        50 ~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~--~~~~~~~~~~~~~v~~v~~s~d~-~~l~~~~~~~~~  126 (311)
T d1nr0a1          50 DTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTT--HILKTTIPVFSGPVKDISWDSES-KRIAAVGEGRER  126 (311)
T ss_dssp             CCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTT--CCEEEEEECSSSCEEEEEECTTS-CEEEEEECCSSC
T ss_pred             eeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccc--cccccccccccCccccccccccc-cccccccccccc
Confidence            446688999999999999999999999999999999997643  22334578899999999999974 67777775  56


Q ss_pred             eEEEEeCCCCeeeeeeee-cCceEEEEEcCCCCE-EEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEe
Q 022716           90 TVRLWDARSGKCSQQAEL-SGENINITYKPDGTH-IAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLT  167 (293)
Q Consensus        90 ~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~-l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  167 (293)
                      .+++|+.++++....+.. ...+.+++|+|++++ +++|+.|+.|++||+++.+....                    ..
T Consensus       127 ~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~--------------------~~  186 (311)
T d1nr0a1         127 FGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKST--------------------FG  186 (311)
T ss_dssp             SEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEE--------------------EC
T ss_pred             cccccccccccccccccccccccccccccccceeeecccccccccccccccccccccc--------------------cc
Confidence            699999998877666554 355778999999985 78899999999999987654332                    22


Q ss_pred             cCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEee-------ccCCCeeEEEEccCCCEEEEecCCCcEEEEE
Q 022716          168 TGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT-------KLEWPVRTISFSHTGDYIASASEDLFIDISN  240 (293)
Q Consensus       168 ~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~-------~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~  240 (293)
                      .+...+.+++++|+++++++++.|+.|++||..++.....+.       +|..+|.+++|+|++++|++|+.|+.|+|||
T Consensus       187 ~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd  266 (311)
T d1nr0a1         187 EHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWN  266 (311)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             cccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEE
Confidence            345678899999999999999999999999999887776653       4678899999999999999999999999999


Q ss_pred             cCCCCEEEEEecCCCc--ceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeee
Q 022716          241 VHTGRTVHQIPCRAAM--NSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE  291 (293)
Q Consensus       241 ~~~~~~~~~~~~~~~i--~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~  291 (293)
                      ..+++.++.+.....+  ..+.+.+++++|++++.|        |.+++|+.|
T Consensus       267 ~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~d--------G~i~~wd~d  311 (311)
T d1nr0a1         267 VATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISAN--------GFINFVNPE  311 (311)
T ss_dssp             TTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETT--------CCEEEEETT
T ss_pred             CCCCcEEEEEECCCCccceEEEEEecCCEEEEEECC--------CEEEEEeCC
Confidence            9999988888755432  334555566789999987        578888876

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.2e-38  Score=260.20  Aligned_cols=265  Identities=22%  Similarity=0.410  Sum_probs=221.8

Q ss_pred             cceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (293)
Q Consensus        12 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i   91 (293)
                      ....+.||.++|++++|+|++++|+||+.||+|++||+.+..    ....+.+|...|.++.++|+ ..+++++..++.+
T Consensus         9 ~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~----~~~~~~~h~~~V~~~~~~~~-~~~~~~~~~~~~~   83 (317)
T d1vyhc1           9 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD----FERTLKGHTDSVQDISFDHS-GKLLASCSADMTI   83 (317)
T ss_dssp             CSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCC----CCEEECCCSSCEEEEEECTT-SSEEEEEETTSCC
T ss_pred             ccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC----EEEEEeCCCCcEEEEeeecc-ccccccccccccc
Confidence            345688999999999999999999999999999999997542    22357789999999999987 4688999999999


Q ss_pred             EEEeCCCCeeeeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeec-ccceeeeeEEecCCCEEEEecC
Q 022716           92 RLWDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTG  169 (293)
Q Consensus        92 ~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~  169 (293)
                      .+|+....+...... .......+.++|++..+++++.|+.+++||+++........ +...+..+.|++.+..+.....
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  163 (317)
T d1vyhc1          84 KLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSN  163 (317)
T ss_dssp             CEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred             ccccccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeC
Confidence            999988776555443 34566788999999999999999999999999877665544 4456777888887776554332


Q ss_pred             C---------------------CCEEEEEECCC--------------------CCEEEEecCCCcEEEEeCCCCEEEEEe
Q 022716          170 N---------------------AGCYCIAIDPM--------------------GRYFAVGSADSLVSLWDISEMLCVRTF  208 (293)
Q Consensus       170 ~---------------------~~~~~~~~~~~--------------------~~~l~~gs~d~~i~iwd~~~~~~~~~~  208 (293)
                      +                     ..+.+++++|+                    +.++++|+.|+.|++||+++++++.++
T Consensus       164 d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~  243 (317)
T d1vyhc1         164 DQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL  243 (317)
T ss_dssp             TSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             CCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEE
Confidence            2                     33556666653                    457999999999999999999999999


Q ss_pred             eccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEe-cCCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEE
Q 022716          209 TKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRI  287 (293)
Q Consensus       209 ~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~-~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~  287 (293)
                      .+|..+|.+++|+|++++|++|+.|+.|++||+.+++.+..+. +..+|++++|+|++++||+|+.|+        ++||
T Consensus       244 ~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg--------~i~i  315 (317)
T d1vyhc1         244 VGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQ--------TVKV  315 (317)
T ss_dssp             ECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTS--------EEEE
T ss_pred             eCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCC--------eEEE
Confidence            9999999999999999999999999999999999999888876 467899999999999999999985        5666


Q ss_pred             Ee
Q 022716          288 YG  289 (293)
Q Consensus       288 ~~  289 (293)
                      |+
T Consensus       316 Wd  317 (317)
T d1vyhc1         316 WE  317 (317)
T ss_dssp             EC
T ss_pred             eC
Confidence            64

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.4e-38  Score=267.95  Aligned_cols=266  Identities=21%  Similarity=0.337  Sum_probs=206.8

Q ss_pred             cCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCc--------------eeEEEeeCCcCCeeEEEEcCCCCCEE
Q 022716           17 TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGK--------------VKDIELRGHADSVDQLCWDPKHADLI   82 (293)
Q Consensus        17 ~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~--------------~~~~~~~~h~~~i~~~~~~~~~~~~l   82 (293)
                      .+|.+.|+|++|+|||++||+|+ |++|++||+.+.....              .......+|...|.+++|+|+ +.+|
T Consensus        59 ~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~-~~~l  136 (388)
T d1erja_          59 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPD-GKFL  136 (388)
T ss_dssp             EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTT-SSEE
T ss_pred             CCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCC-CCcc
Confidence            47999999999999999999986 8999999987532100              001123467888999999997 5789


Q ss_pred             EEEeCCCeEEEEeCCCCeeeeeeee-cCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecC-
Q 022716           83 ATASGDKTVRLWDARSGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMT-  160 (293)
Q Consensus        83 ~s~~~d~~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~-  160 (293)
                      ++|+.|+.|++||...++....... ...+.++.+.+++..+++++.++.+++||+++...............+.+.+. 
T Consensus       137 ~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  216 (388)
T d1erja_         137 ATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGD  216 (388)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTT
T ss_pred             eecccccccccccccccccccccccccccccccccccccccccccccceeeeeeeccccccccccccccccccccccCCC
Confidence            9999999999999999887776653 45677899999999999999999999999988766555444333333444332 


Q ss_pred             CCEEEEe----------------------------cCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEE--------
Q 022716          161 GEMFFLT----------------------------TGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLC--------  204 (293)
Q Consensus       161 ~~~~~~~----------------------------~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~--------  204 (293)
                      +..+...                            .+...+.+++++|++++|++|+.|+.|++||++++..        
T Consensus       217 ~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  296 (388)
T d1erja_         217 GKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPN  296 (388)
T ss_dssp             CCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-------------
T ss_pred             CCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCcccccccccc
Confidence            2222211                            1234688999999999999999999999999875432        


Q ss_pred             ----EEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEe-cCCCcceeE------ECCCCCeEEEEEc
Q 022716          205 ----VRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP-CRAAMNSVE------WNPKYNLLAYAGD  273 (293)
Q Consensus       205 ----~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~-~~~~i~~~~------~sp~~~~la~~~~  273 (293)
                          ......|...|.+++|+|++++|++|+.|+.|++||+.+++.+..+. +..+|.+++      |+|++++||+||.
T Consensus       297 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~  376 (388)
T d1erja_         297 SGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSG  376 (388)
T ss_dssp             --CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEET
T ss_pred             ccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeC
Confidence                33455678899999999999999999999999999999999988876 456787775      5789999999998


Q ss_pred             CCCCCCCCcceEEEEeeec
Q 022716          274 DKNKYQADEGVFRIYGFEN  292 (293)
Q Consensus       274 d~~~~~~~~~~~~~~~~~~  292 (293)
                      |        +.+|||++|+
T Consensus       377 D--------g~I~iW~~~k  387 (388)
T d1erja_         377 D--------CKARIWKYKK  387 (388)
T ss_dssp             T--------SEEEEEEEEE
T ss_pred             C--------CEEEEEeeee
Confidence            7        6899999986

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.1e-37  Score=259.35  Aligned_cols=240  Identities=18%  Similarity=0.265  Sum_probs=197.3

Q ss_pred             cceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (293)
Q Consensus        12 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i   91 (293)
                      ..+++.||.++|++++|+|++++||||+.||+|++||+...    .....+..|...|.+++|+|+ +.++++|+.|+.+
T Consensus        47 ~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~----~~~~~~~~~~~~v~~v~~~~~-~~~l~~~~~d~~i  121 (340)
T d1tbga_          47 TRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTT----NKVHAIPLRSSWVMTCAYAPS-GNYVACGGLDNIC  121 (340)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTT----EEEEEEECSCSCEEEEEECTT-SSEEEEEETTCCE
T ss_pred             eeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccc----eeEEEEecccccEEeeEeecc-ceeeeeeccccee
Confidence            45778999999999999999999999999999999998753    223457789999999999997 4689999999999


Q ss_pred             EEEeCCCCeee----eeeee------------------------------------------cCceEEEEEcCCCCEEEE
Q 022716           92 RLWDARSGKCS----QQAEL------------------------------------------SGENINITYKPDGTHIAV  125 (293)
Q Consensus        92 ~vwd~~~~~~~----~~~~~------------------------------------------~~~~~~~~~~~~~~~l~~  125 (293)
                      ++|+.......    .....                                          ...+....+.+.+..+++
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (340)
T d1tbga_         122 SIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVS  201 (340)
T ss_dssp             EEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             ecccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEE
Confidence            99996543211    00000                                          001223456678889999


Q ss_pred             EeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEE
Q 022716          126 GNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCV  205 (293)
Q Consensus       126 ~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~  205 (293)
                      ++.|+.+++||+++.++...                    +..+...+.+++++|++++|++|+.|+.|++||++....+
T Consensus       202 ~~~d~~v~i~d~~~~~~~~~--------------------~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~  261 (340)
T d1tbga_         202 GACDASAKLWDVREGMCRQT--------------------FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQEL  261 (340)
T ss_dssp             EETTTEEEEEETTTTEEEEE--------------------ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred             eecCceEEEEECCCCcEEEE--------------------EeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccc
Confidence            99999999999987665433                    2345667889999999999999999999999999998877


Q ss_pred             EEee--ccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEe-cCCCcceeEECCCCCeEEEEEcCCC
Q 022716          206 RTFT--KLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKN  276 (293)
Q Consensus       206 ~~~~--~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~-~~~~i~~~~~sp~~~~la~~~~d~~  276 (293)
                      ..+.  .+..+|.+++|+|++++|++|+.|+.|++||..+++.+..+. +..+|++++|+|++++||+||.|+.
T Consensus       262 ~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~  335 (340)
T d1tbga_         262 MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSF  335 (340)
T ss_dssp             EEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSC
T ss_pred             cccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCE
Confidence            6653  455689999999999999999999999999999999998886 4678999999999999999999853

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.5e-37  Score=261.35  Aligned_cols=236  Identities=17%  Similarity=0.215  Sum_probs=193.2

Q ss_pred             cccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCC
Q 022716           20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG   99 (293)
Q Consensus        20 ~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~   99 (293)
                      ..+|+|++|+|+|++||+|+.||.|++||++...  ......+.+|..+|.+++|+|+ +++|+||+.|+.|++||++++
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~--~~~~~~l~gH~~~V~~l~fsp~-~~~l~s~s~D~~i~vWd~~~~   83 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK--WVQVHELKEHNGQVTGVDWAPD-SNRIVTCGTDRNAYVWTLKGR   83 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE--EEEEEEEECCSSCEEEEEEETT-TTEEEEEETTSCEEEEEEETT
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCC--EEEEEEecCCCCCEEEEEECCC-CCEEEEEECCCeEEEEeeccc
Confidence            4789999999999999999999999999986431  2233457899999999999997 478999999999999999877


Q ss_pred             eeeeeee---ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEE
Q 022716          100 KCSQQAE---LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCI  176 (293)
Q Consensus       100 ~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  176 (293)
                      .......   ....+.+++|+|+++.+++++.|+++++|++..........                .....+...+.++
T Consensus        84 ~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~----------------~~~~~~~~~v~~v  147 (371)
T d1k8kc_          84 TWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCK----------------HIKKPIRSTVLSL  147 (371)
T ss_dssp             EEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEE----------------EECTTCCSCEEEE
T ss_pred             ccccccccccccccccccccccccccceeecccCcceeeeeeccccccccc----------------ccccccccccccc
Confidence            6544433   34567889999999999999999999999986543221110                0112345678899


Q ss_pred             EECCCCCEEEEecCCCcEEEEeCCC------------------CEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEE
Q 022716          177 AIDPMGRYFAVGSADSLVSLWDISE------------------MLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDI  238 (293)
Q Consensus       177 ~~~~~~~~l~~gs~d~~i~iwd~~~------------------~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~i  238 (293)
                      +|+|++++|++|+.|++|++||...                  +..+.....|...|.+++|+|+|++|++++.|+.|++
T Consensus       148 ~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~i  227 (371)
T d1k8kc_         148 DWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCL  227 (371)
T ss_dssp             EECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEE
T ss_pred             cccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceE
Confidence            9999999999999999999999743                  2345566778889999999999999999999999999


Q ss_pred             EEcCCCCEEEEEec-CCCcceeEECCCCCeEEEEEcC
Q 022716          239 SNVHTGRTVHQIPC-RAAMNSVEWNPKYNLLAYAGDD  274 (293)
Q Consensus       239 w~~~~~~~~~~~~~-~~~i~~~~~sp~~~~la~~~~d  274 (293)
                      ||..+++.+..+.. ..+|.+++|+|++++||+|+++
T Consensus       228 wd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g~d~  264 (371)
T d1k8kc_         228 ADADKKMAVATLASETLPLLAVTFITESSLVAAGHDC  264 (371)
T ss_dssp             EEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEETTS
T ss_pred             EeeecccceeeeecccccceeeeecCCCCEEEEEcCC
Confidence            99999998877754 5589999999999888876543

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.1e-36  Score=248.40  Aligned_cols=263  Identities=17%  Similarity=0.213  Sum_probs=184.2

Q ss_pred             ccceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCe
Q 022716           11 LHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKT   90 (293)
Q Consensus        11 ~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~   90 (293)
                      ...+.+.||.++|++++|+|+|++|+||+.||+|++||+...   ........+|...|.+++|+|++ . +++++.|+.
T Consensus         3 ~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~---~~~~~~~~~h~~~v~~v~~~~~g-~-~~~~~~d~~   77 (299)
T d1nr0a2           3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTG---ISNRVFPDVHATMITGIKTTSKG-D-LFTVSWDDH   77 (299)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC---CEEECSSCSCSSCEEEEEECTTS-C-EEEEETTTE
T ss_pred             ccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCC---cEEEEEcCCCCCcEEEEEeeccc-e-eecccceee
Confidence            345778999999999999999999999999999999999753   22222234789999999999974 3 567889999


Q ss_pred             EEEEeCCCCeee----eeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEE-
Q 022716           91 VRLWDARSGKCS----QQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFF-  165 (293)
Q Consensus        91 i~vwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-  165 (293)
                      +++|+.......    ........+..++++|+++.+++++ ++.+.+|+........   .......+.|++.+..+. 
T Consensus        78 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~~~~~~~---~~~~~~~~~~s~~~~~l~~  153 (299)
T d1nr0a2          78 LKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGKLTEVP---ISYNSSCVALSNDKQFVAV  153 (299)
T ss_dssp             EEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETTEEEEEE---CSSCEEEEEECTTSCEEEE
T ss_pred             EEEeccCCccccccccccccccccccccccccccccccccc-cccccccccccccccc---ccccccccccccccccccc
Confidence            999997543211    1112234445566666665544443 4456666543322111   111222233333322221 


Q ss_pred             ---------------------EecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEE---EeeccCCCeeEEEEc
Q 022716          166 ---------------------LTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVR---TFTKLEWPVRTISFS  221 (293)
Q Consensus       166 ---------------------~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~---~~~~~~~~v~~l~~s  221 (293)
                                           ...+...+.+++++|+++++++++.|+.|++||+.++....   .+..|..+|.+++|+
T Consensus       154 g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s  233 (299)
T d1nr0a2         154 GGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWS  233 (299)
T ss_dssp             EETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEEC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                                 22345678899999999999999999999999987765443   455688899999999


Q ss_pred             cCCCEEEEecCCCcEEEEEcCCCCEEEEE---ec-CCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeee
Q 022716          222 HTGDYIASASEDLFIDISNVHTGRTVHQI---PC-RAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE  291 (293)
Q Consensus       222 p~~~~l~s~s~d~~i~iw~~~~~~~~~~~---~~-~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~  291 (293)
                      |++++|++|+.|+.|++||+.++......   .+ ...+.++.| |++.+|++||.|        +++|||++.
T Consensus       234 ~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D--------~~i~iWdl~  298 (299)
T d1nr0a2         234 PDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQD--------SNIKFWNVP  298 (299)
T ss_dssp             TTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEETT--------SCEEEEECC
T ss_pred             ccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEeCC--------CEEEEEecc
Confidence            99999999999999999999887543222   12 234666655 557899999987        578888874

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.1e-35  Score=244.60  Aligned_cols=237  Identities=15%  Similarity=0.166  Sum_probs=196.1

Q ss_pred             ccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCC
Q 022716           19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS   98 (293)
Q Consensus        19 h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~   98 (293)
                      +.+.+..++++|+|+.|+.++ ++.|.+|+++....    ...+.+|...|++++|+|+ +++|++|+.|+.|++||+.+
T Consensus        16 ~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~----~~~~~~H~~~v~~~~~sp~-g~~latg~~dg~i~iwd~~~   89 (311)
T d1nr0a1          16 ARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTD----TEIYTEHSHQTTVAKTSPS-GYYCASGDVHGNVRIWDTTQ   89 (311)
T ss_dssp             CTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSC----CEEECCCSSCEEEEEECTT-SSEEEEEETTSEEEEEESSS
T ss_pred             CCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCce----eEEEcCCCCCEEEEEEeCC-CCeEeccccCceEeeeeeec
Confidence            445677899999999999885 67799999975321    1246799999999999997 57999999999999999988


Q ss_pred             Ceeee--eee-ecCceEEEEEcCCCCEEEEEeC--CCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCE
Q 022716           99 GKCSQ--QAE-LSGENINITYKPDGTHIAVGNR--DDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGC  173 (293)
Q Consensus        99 ~~~~~--~~~-~~~~~~~~~~~~~~~~l~~~~~--d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  173 (293)
                      +....  .+. +.+.+.+++|+|+++++++++.  +..+++|++++.++....                    ..+...+
T Consensus        90 ~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l--------------------~~h~~~v  149 (311)
T d1nr0a1          90 TTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNL--------------------TGQARAM  149 (311)
T ss_dssp             TTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCC--------------------CCCSSCE
T ss_pred             cccccccccccccCccccccccccccccccccccccccccccccccccccccc--------------------ccccccc
Confidence            76443  233 3456788999999999999986  456899999876554332                    2345567


Q ss_pred             EEEEECCCCCE-EEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEe-
Q 022716          174 YCIAIDPMGRY-FAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP-  251 (293)
Q Consensus       174 ~~~~~~~~~~~-l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~-  251 (293)
                      .+++|+|++++ +++|+.|+.|++||+++++....+..|..+|.++.|+|+++++++++.|+.|++||..++..+..+. 
T Consensus       150 ~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~  229 (311)
T d1nr0a1         150 NSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFED  229 (311)
T ss_dssp             EEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBC
T ss_pred             ccccccccceeeecccccccccccccccccccccccccccccccccccCccccccccccccccccccccccccccccccc
Confidence            88999999875 8889999999999999999999999999999999999999999999999999999999988877664 


Q ss_pred             -------cCCCcceeEECCCCCeEEEEEcCCCCCCCC
Q 022716          252 -------CRAAMNSVEWNPKYNLLAYAGDDKNKYQAD  281 (293)
Q Consensus       252 -------~~~~i~~~~~sp~~~~la~~~~d~~~~~~~  281 (293)
                             +..+|++++|+|++++|++|+.|+.+++|+
T Consensus       230 ~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd  266 (311)
T d1nr0a1         230 DSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWN  266 (311)
T ss_dssp             TTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             cccccccccccccccccCCCCCEEEEEeCCCeEEEEE
Confidence                   345789999999999999999997555544

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4.7e-35  Score=248.10  Aligned_cols=265  Identities=16%  Similarity=0.225  Sum_probs=196.6

Q ss_pred             cceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (293)
Q Consensus        12 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i   91 (293)
                      ..+.+.+|.++|.+++|+|++++|++|+.|++|++||+....  ......+.+|...|.++.|+|++ ..|++++.|+.+
T Consensus        43 ~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~--~~~~~~~~~~~~~v~~i~~~p~~-~~l~~~s~d~~i  119 (371)
T d1k8kc_          43 QVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRT--WKPTLVILRINRAARCVRWAPNE-KKFAVGSGSRVI  119 (371)
T ss_dssp             EEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTE--EEEEEECCCCSSCEEEEEECTTS-SEEEEEETTSSE
T ss_pred             EEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccc--ccccccccccccccccccccccc-ccceeecccCcc
Confidence            345678999999999999999999999999999999997432  22334567899999999999974 689999999999


Q ss_pred             EEEeCCCCeeeeee-----eecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCE-EE
Q 022716           92 RLWDARSGKCSQQA-----ELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEM-FF  165 (293)
Q Consensus        92 ~vwd~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~  165 (293)
                      ++|++.........     .+...+.+++|+|++++|++|+.|+++++||+............  .... ..+.+.. ..
T Consensus       120 ~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~  196 (371)
T d1k8kc_         120 SICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPT--PWGS-KMPFGELMFE  196 (371)
T ss_dssp             EEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCB--TTBS-CCCTTCEEEE
T ss_pred             eeeeeecccccccccccccccccccccccccccccceeccccCcEEEEEeeccCccccccccc--cccc-cccceeeeee
Confidence            99988665432221     13456788999999999999999999999998754322111100  0000 0011222 22


Q ss_pred             EecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCC--
Q 022716          166 LTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHT--  243 (293)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~--  243 (293)
                      ...+...+.+++|+|++++|++++.|+.|++||+.++..+..+..|..+|.+++|+|++++|++|+ |+.+.+|....  
T Consensus       197 ~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g~-d~~~~~~~~~~~~  275 (371)
T d1k8kc_         197 SSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAA  275 (371)
T ss_dssp             CCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEET-TSSCEEEEEETTT
T ss_pred             ccCccCcEEEEEeecccccccccccCCcceEEeeecccceeeeecccccceeeeecCCCCEEEEEc-CCceEEEEeeCCC
Confidence            334566789999999999999999999999999999999999999999999999999999998776 56555554322  


Q ss_pred             CCEEEE-------------E---------------------------ecCCCcceeEECCCC----CeEEEEEcCCCCCC
Q 022716          244 GRTVHQ-------------I---------------------------PCRAAMNSVEWNPKY----NLLAYAGDDKNKYQ  279 (293)
Q Consensus       244 ~~~~~~-------------~---------------------------~~~~~i~~~~~sp~~----~~la~~~~d~~~~~  279 (293)
                      +.....             .                           .|+..|+++++.|.+    ..|+++|.|     
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~D-----  350 (371)
T d1k8kc_         276 GKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMD-----  350 (371)
T ss_dssp             TEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETT-----
T ss_pred             ceEEEeeeecCccccccccccceeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCC-----
Confidence            211100             0                           034568888987644    358999988     


Q ss_pred             CCcceEEEEeee
Q 022716          280 ADEGVFRIYGFE  291 (293)
Q Consensus       280 ~~~~~~~~~~~~  291 (293)
                         |.+|||+++
T Consensus       351 ---g~v~iW~~~  359 (371)
T d1k8kc_         351 ---GGMSIWDVR  359 (371)
T ss_dssp             ---SEEEEEEHH
T ss_pred             ---CeEEEEeCC
Confidence               578888875

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-33  Score=234.65  Aligned_cols=222  Identities=18%  Similarity=0.280  Sum_probs=192.9

Q ss_pred             ecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEe
Q 022716           16 YTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWD   95 (293)
Q Consensus        16 ~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd   95 (293)
                      ..+|.+.|.+++|+|+|++|++|+.||+|++||+....  ......+..|...+..+.|+|+ ..++++++.|+.+++|+
T Consensus        93 ~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~d~~i~~~~  169 (337)
T d1gxra_          93 CLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPT--PRIKAELTSSAPACYALAISPD-SKVCFSCCSDGNIAVWD  169 (337)
T ss_dssp             CSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC----EEEEEEECSSSCEEEEEECTT-SSEEEEEETTSCEEEEE
T ss_pred             ecCCCCcEEEEEEcCCCCEEEEeecccccccccccccc--cccccccccccccccccccccc-ccccccccccccccccc
Confidence            45899999999999999999999999999999987432  2233457789999999999986 46889999999999999


Q ss_pred             CCCCeeeeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecC-----
Q 022716           96 ARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG-----  169 (293)
Q Consensus        96 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----  169 (293)
                      +.++++..... ....+.+++|++++..+++++.|+.+++||+++.+.+....+...+..+.|++.+..+.....     
T Consensus       170 ~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~  249 (337)
T d1gxra_         170 LHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVE  249 (337)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccceeecccccccceEEEEEcccccccceeccccccc
Confidence            99988766554 355677899999999999999999999999999988888888888999999998877665432     


Q ss_pred             ---------------CCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCC
Q 022716          170 ---------------NAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDL  234 (293)
Q Consensus       170 ---------------~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~  234 (293)
                                     ...+.+++|+|++++|++|+.||.|++||+.+++.+..+ .|..+|.+++|+|++++|++|+.|+
T Consensus       250 i~d~~~~~~~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~s~d~~~l~t~s~D~  328 (337)
T d1gxra_         250 VLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDK  328 (337)
T ss_dssp             EEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTS
T ss_pred             cccccccccccccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEc-cCCCCEEEEEEeCCCCEEEEEeCCC
Confidence                           346789999999999999999999999999999888765 5778999999999999999999999


Q ss_pred             cEEEEEc
Q 022716          235 FIDISNV  241 (293)
Q Consensus       235 ~i~iw~~  241 (293)
                      .|+|||+
T Consensus       329 ~I~vWdl  335 (337)
T d1gxra_         329 KATVYEV  335 (337)
T ss_dssp             CEEEEEE
T ss_pred             eEEEEEE
Confidence            9999986

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.4e-33  Score=233.34  Aligned_cols=262  Identities=14%  Similarity=0.079  Sum_probs=189.8

Q ss_pred             ceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEE
Q 022716           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (293)
Q Consensus        13 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~   92 (293)
                      ++...+|+..|++|+|+|++++||+||.||+|+|||++.... ........+|..+|.+++|+|.++.+|++|+.|+.|+
T Consensus         4 v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~-~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~   82 (342)
T d1yfqa_           4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAK-NVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEIL   82 (342)
T ss_dssp             EECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTT-EEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred             EEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCc-ceEEEEecCCCCCEEEEEEeCCCCCEEEEccccccee
Confidence            455779999999999999999999999999999999975432 2222334479999999999987677899999999999


Q ss_pred             EEeCCCCeeeeeeeec--CceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeec-------ccceeeeeEEecCCCE
Q 022716           93 LWDARSGKCSQQAELS--GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-------FGYEVNEIAWNMTGEM  163 (293)
Q Consensus        93 vwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~-------~~~~~~~v~~~~~~~~  163 (293)
                      +|+.............  .......+.+++..+++++.++++++||++.........       .........+.+.+..
T Consensus        83 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (342)
T d1yfqa_          83 KVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR  162 (342)
T ss_dssp             EECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE
T ss_pred             eeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCc
Confidence            9999877655443322  223345566788899999999999999987543221111       0111111222222222


Q ss_pred             EEEec------------------------CCCCEEEEEE-CCCCCEEEEecCCCcEEEEeCCCCE---------EEEE--
Q 022716          164 FFLTT------------------------GNAGCYCIAI-DPMGRYFAVGSADSLVSLWDISEML---------CVRT--  207 (293)
Q Consensus       164 ~~~~~------------------------~~~~~~~~~~-~~~~~~l~~gs~d~~i~iwd~~~~~---------~~~~--  207 (293)
                      +...+                        ......+... ..++..+++++.||.+.+|+.....         ....  
T Consensus       163 ~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~  242 (342)
T d1yfqa_         163 LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHR  242 (342)
T ss_dssp             EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCC
T ss_pred             eeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeee
Confidence            22211                        1122334444 4457889999999999999875321         1111  


Q ss_pred             ----eeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEecCCCcceeEECCCCCeEEEEEcCC
Q 022716          208 ----FTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDK  275 (293)
Q Consensus       208 ----~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~d~  275 (293)
                          ...|..++++++|+|++++||||+.||.|++||+.+++.+.++....+...++|+|+++++|+|+.|.
T Consensus       243 ~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~~~~~~~~s~~~~~l~~a~sdd  314 (342)
T d1yfqa_         243 LNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDD  314 (342)
T ss_dssp             CCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEEEECT
T ss_pred             eccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCCCCCEEEEEEeCCCEEEEEEcCC
Confidence                12456689999999999999999999999999999999998887666777899999999999988775

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8.5e-33  Score=230.09  Aligned_cols=252  Identities=16%  Similarity=0.157  Sum_probs=192.1

Q ss_pred             ceeecCcc-ccEEEEEECC--CCCeEEEEeCCCcEEEeecCCCCCCcee----EEEeeCCcCCeeEEEEcCCCCCEEEEE
Q 022716           13 SREYTGHK-KKVHSVAWNC--TGTKLASGSVDQTARVWHIEPHGHGKVK----DIELRGHADSVDQLCWDPKHADLIATA   85 (293)
Q Consensus        13 ~~~~~~h~-~~v~~l~~s~--~~~~l~s~~~dg~v~iw~~~~~~~~~~~----~~~~~~h~~~i~~~~~~~~~~~~l~s~   85 (293)
                      ...+.+|. ..|++++|+|  +|.+|++|+.||+|++||+.........    ...+..|..+|.+++|++++ ..++++
T Consensus        55 ~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~-~~l~~~  133 (325)
T d1pgua1          55 VVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEG-RRLCVV  133 (325)
T ss_dssp             EEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTS-SEEEEE
T ss_pred             eEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCC-Ccccee
Confidence            45677885 6899999998  5679999999999999998643211111    12355788999999999975 455555


Q ss_pred             e--CCCeEEEEeCCCCeeeeeeee-cCceEEEEEcCCCCE-EEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCC
Q 022716           86 S--GDKTVRLWDARSGKCSQQAEL-SGENINITYKPDGTH-IAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTG  161 (293)
Q Consensus        86 ~--~d~~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~-l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~  161 (293)
                      +  .++.+++|+.+++++...+.. ...+.+++|+|++.. +++++.|+.+++||++..+.......             
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~-------------  200 (325)
T d1pgua1         134 GEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRT-------------  200 (325)
T ss_dssp             ECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECS-------------
T ss_pred             eccccceEEEEeecccccceeeeecccccccccccccccceEEEeecccccccccccccccceeccc-------------
Confidence            4  377899999999887776653 456778999999875 67889999999999876553332111             


Q ss_pred             CEEEEecCCCCEEEEEECCC-CCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEc---cCCCEEEEecCCCcEE
Q 022716          162 EMFFLTTGNAGCYCIAIDPM-GRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFS---HTGDYIASASEDLFID  237 (293)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~-~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s---p~~~~l~s~s~d~~i~  237 (293)
                          ...+...+.+++|+|+ +.++++++.|+.|++||+++++.+.++.+|..++..+.|+   |+|++|++++.|+.|+
T Consensus       201 ----~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~  276 (325)
T d1pgua1         201 ----HHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIR  276 (325)
T ss_dssp             ----SSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEE
T ss_pred             ----ccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEE
Confidence                0123456789999997 6899999999999999999999999999998888777766   7899999999999999


Q ss_pred             EEEcCCCCEEEEEecCC---CcceeEECCC-CCeEEEEEcCCCCCCCCcceEEEEee
Q 022716          238 ISNVHTGRTVHQIPCRA---AMNSVEWNPK-YNLLAYAGDDKNKYQADEGVFRIYGF  290 (293)
Q Consensus       238 iw~~~~~~~~~~~~~~~---~i~~~~~sp~-~~~la~~~~d~~~~~~~~~~~~~~~~  290 (293)
                      |||+.+++.++.+..+.   .+..+++.+. ..+|+++|.|        +.+|||++
T Consensus       277 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d--------g~i~vwdl  325 (325)
T d1pgua1         277 VWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLD--------GTLNFYEL  325 (325)
T ss_dssp             EEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETT--------SCEEEEET
T ss_pred             EEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECC--------CEEEEEEC
Confidence            99999999888765332   2344454433 3478899987        46677764

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.9e-32  Score=225.12  Aligned_cols=259  Identities=20%  Similarity=0.306  Sum_probs=190.1

Q ss_pred             ceeecCccccE-EEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716           13 SREYTGHKKKV-HSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (293)
Q Consensus        13 ~~~~~~h~~~v-~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i   91 (293)
                      ..++.||...| +|++|  ++++|+||+.||+|++||+...    .....+.+|.+.|.+++|+|+  .+|+||+.|+.|
T Consensus         5 ~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~----~~~~~l~~H~~~V~~l~~s~~--~~l~s~s~D~~i   76 (355)
T d1nexb2           5 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINK----KFLLQLSGHDGGVWALKYAHG--GILVSGSTDRTV   76 (355)
T ss_dssp             EEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTT----EEEEEEECCSSCEEEEEEETT--TEEEEEETTCCE
T ss_pred             cEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCC----cEEEEEECCCCCEEEEEEcCC--CEEEEEeccccc
Confidence            34578998775 67665  6789999999999999998742    234567899999999999874  589999999999


Q ss_pred             EEEeCCCCeeeeeeeecCc---eEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecc--------------------
Q 022716           92 RLWDARSGKCSQQAELSGE---NINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF--------------------  148 (293)
Q Consensus        92 ~vwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~--------------------  148 (293)
                      ++|+.....+.........   .....+.+++..+++++.|+.+++||++..........                    
T Consensus        77 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (355)
T d1nexb2          77 RVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGV  156 (355)
T ss_dssp             EEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEE
T ss_pred             ccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeee
Confidence            9999998877655443332   23456778999999999999999999876543221100                    


Q ss_pred             ----cceee-----------------eeEEecCCCE--EEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEE
Q 022716          149 ----GYEVN-----------------EIAWNMTGEM--FFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCV  205 (293)
Q Consensus       149 ----~~~~~-----------------~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~  205 (293)
                          ...+.                 ...|+.....  .........+.++.++|++..+++++.|+.|++||.+++..+
T Consensus       157 ~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~  236 (355)
T d1nexb2         157 LRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELM  236 (355)
T ss_dssp             EECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEE
T ss_pred             eeeccccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeeccccccc
Confidence                00000                 0112221111  112223456778899999999999999999999999999999


Q ss_pred             EEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEecCCCccee-EECCCCCeEEEEEcCCCCCCCCcce
Q 022716          206 RTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSV-EWNPKYNLLAYAGDDKNKYQADEGV  284 (293)
Q Consensus       206 ~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~i~~~-~~sp~~~~la~~~~d~~~~~~~~~~  284 (293)
                      ..+.+|..+|.+++++  +++|++|+.|+.|++||+.++........ ..+.++ .|+|++.++++|+ |        +.
T Consensus       237 ~~~~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~g~-d--------~~  304 (355)
T d1nexb2         237 YTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHH-TNLSAITTFYVSDNILVSGS-E--------NQ  304 (355)
T ss_dssp             EEECCCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCEEEEEEC-TTCCCCCEEEECSSEEEEEE-T--------TE
T ss_pred             cccccccccccccccc--cceeeeeecccccccccccccceeccccc-CCceEEEEEcCCCCEEEEEe-C--------CE
Confidence            9999999999999986  46999999999999999998876655543 445554 5677777777665 4        35


Q ss_pred             EEEEeee
Q 022716          285 FRIYGFE  291 (293)
Q Consensus       285 ~~~~~~~  291 (293)
                      +|||+++
T Consensus       305 i~vwd~~  311 (355)
T d1nexb2         305 FNIYNLR  311 (355)
T ss_dssp             EEEEETT
T ss_pred             EEEEECC
Confidence            7777765

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.3e-32  Score=222.85  Aligned_cols=247  Identities=19%  Similarity=0.251  Sum_probs=184.8

Q ss_pred             ccceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCe
Q 022716           11 LHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKT   90 (293)
Q Consensus        11 ~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~   90 (293)
                      .+.+.+.||.++|++++|+|    |+||+.||+|++||+..         ...+|...|.++.+.+.  ..+++++.|++
T Consensus         4 ~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~---------~~~~h~~~V~~~~~~~~--~~~~s~s~D~~   68 (287)
T d1pgua2           4 EVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSS---------MHQDHSNLIVSLDNSKA--QEYSSISWDDT   68 (287)
T ss_dssp             EEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTE---------EECCCCSCEEEEECCST--TCCEEEETTTE
T ss_pred             ceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCC---------CCCCCCCCEEEEEecCC--CeEEEEeeccc
Confidence            45678999999999999987    99999999999999752         24689999999998764  45789999999


Q ss_pred             EEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEe---
Q 022716           91 VRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLT---  167 (293)
Q Consensus        91 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---  167 (293)
                      +++|++...      .....+..+.+.+++..++++ .++.+.+|+..+............+..+  .+.+..+.+.   
T Consensus        69 v~~w~~~~~------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~  139 (287)
T d1pgua2          69 LKVNGITKH------EFGSQPKVASANNDGFTAVLT-NDDDLLILQSFTGDIIKSVRLNSPGSAV--SLSQNYVAVGLEE  139 (287)
T ss_dssp             EEETTEEEE------ECSSCEEEEEECSSSEEEEEE-TTSEEEEEETTTCCEEEEEECSSCEEEE--EECSSEEEEEETT
T ss_pred             ccccccccc------ccccceeeeeeccCCceEEEe-ecccceeeeccceeeeeeccccceeeee--eccCcceeeeccc
Confidence            999987432      233445566667766555543 4566777777666555544433322221  1222111111   


Q ss_pred             --------------------cCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEE-eeccCCCeeEEEEccC---
Q 022716          168 --------------------TGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRT-FTKLEWPVRTISFSHT---  223 (293)
Q Consensus       168 --------------------~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~-~~~~~~~v~~l~~sp~---  223 (293)
                                          .+...+.+++|+|++.+|++|+.||.|++||+.++..... +..|..+|.+++|+|.   
T Consensus       140 ~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~  219 (287)
T d1pgua2         140 GNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKG  219 (287)
T ss_dssp             TSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC--
T ss_pred             cceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeecccccccccccccccccceeeecccccc
Confidence                                1235688999999999999999999999999998876553 5678899999999875   


Q ss_pred             -------CCEEEEecCCCcEEEEEcCCC-CEEEEE-ecCCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEee
Q 022716          224 -------GDYIASASEDLFIDISNVHTG-RTVHQI-PCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGF  290 (293)
Q Consensus       224 -------~~~l~s~s~d~~i~iw~~~~~-~~~~~~-~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~  290 (293)
                             +.+|++|+.|+.|++||+.++ +.+..+ .+...|++++|+|++ .|+++|.|        +.+|||++
T Consensus       220 ~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D--------~~v~iW~i  286 (287)
T d1pgua2         220 ANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGAD--------ACIKRWNV  286 (287)
T ss_dssp             ----CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETT--------SCEEEEEE
T ss_pred             cccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECC--------CeEEEEEE
Confidence                   468999999999999999774 445544 356789999999976 68889877        57888875

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-31  Score=220.21  Aligned_cols=267  Identities=18%  Similarity=0.284  Sum_probs=192.4

Q ss_pred             ccceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCe
Q 022716           11 LHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKT   90 (293)
Q Consensus        11 ~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~   90 (293)
                      .+.+.+.||.+.|.+ +++++|++|||||.||+|+|||+.+..    ....+.+|...|.+++|+|   ++|++|+.|+.
T Consensus         7 ~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~----~~~~~~~h~~~V~~v~~~~---~~l~s~s~D~~   78 (342)
T d2ovrb2           7 KSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGK----CLRTLVGHTGGVWSSQMRD---NIIISGSTDRT   78 (342)
T ss_dssp             CCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCC----EEEECCCCSSCEEEEEEET---TEEEEEETTSC
T ss_pred             CcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCC----EEEEEeCCCCCEEEEEeCC---Cccccceeccc
Confidence            355678999998865 356689999999999999999997532    2345789999999999986   48999999999


Q ss_pred             EEEEeCCCCeeeeeeeecCce---------------------------------------EEEEEcCCCCEEEEEeCCCe
Q 022716           91 VRLWDARSGKCSQQAELSGEN---------------------------------------INITYKPDGTHIAVGNRDDE  131 (293)
Q Consensus        91 i~vwd~~~~~~~~~~~~~~~~---------------------------------------~~~~~~~~~~~l~~~~~d~~  131 (293)
                      +++|+................                                       ......+....+++++.|+.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  158 (342)
T d2ovrb2          79 LKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFM  158 (342)
T ss_dssp             EEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSC
T ss_pred             ccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCe
Confidence            999998766533221111100                                       01223345556778888888


Q ss_pred             EEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCC-------------------EEEEEECCCCCEEEEecCCC
Q 022716          132 LTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAG-------------------CYCIAIDPMGRYFAVGSADS  192 (293)
Q Consensus       132 i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~l~~gs~d~  192 (293)
                      +++||++.......... .......+.+.+..+...+.+..                   ....++.+++++|++|+.|+
T Consensus       159 i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~s~d~  237 (342)
T d2ovrb2         159 VKVWDPETETCLHTLQG-HTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADS  237 (342)
T ss_dssp             EEEEEGGGTEEEEEECC-CSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETTEEEEEETTS
T ss_pred             EEEeecccceeeEEEcC-cccccccccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecCCCEEEEEcCCC
Confidence            88888877665544321 12222333444444444333322                   22356778899999999999


Q ss_pred             cEEEEeCCCCEEEEEeecc---CCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEe------cCCCcceeEECC
Q 022716          193 LVSLWDISEMLCVRTFTKL---EWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP------CRAAMNSVEWNP  263 (293)
Q Consensus       193 ~i~iwd~~~~~~~~~~~~~---~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~------~~~~i~~~~~sp  263 (293)
                      .|++||+...+....+..+   ...+.++++  +++++++|+.||.|++||+++++.++.+.      +...|++++|+|
T Consensus       238 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~  315 (342)
T d2ovrb2         238 TVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASN  315 (342)
T ss_dssp             CEEEEETTTCCEEEEECSTTSCSSCEEEEEE--CSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECS
T ss_pred             EEEEEecccccccccccccceeeeceeeccc--CCCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECC
Confidence            9999999888777766553   445666655  56799999999999999999999888764      345699999999


Q ss_pred             CCCeEEEEEcCCCCCCCCcceEEEEeeec
Q 022716          264 KYNLLAYAGDDKNKYQADEGVFRIYGFEN  292 (293)
Q Consensus       264 ~~~~la~~~~d~~~~~~~~~~~~~~~~~~  292 (293)
                      ++.++|+|+.|+.+-    ..+++|+|+.
T Consensus       316 ~~~~la~g~~dGt~~----~~l~~~Df~~  340 (342)
T d2ovrb2         316 TKLVCAVGSRNGTEE----TKLLVLDFDV  340 (342)
T ss_dssp             SEEEEEEECSSSSSC----CEEEEEECCC
T ss_pred             CCCEEEEEeCCCCCe----eEEEEEeCCC
Confidence            999999999887433    4689999874

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8.3e-31  Score=222.04  Aligned_cols=222  Identities=24%  Similarity=0.350  Sum_probs=186.4

Q ss_pred             ecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEe
Q 022716           16 YTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWD   95 (293)
Q Consensus        16 ~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd   95 (293)
                      ..+|...|.+++|+|+|++|++|+.||.|++|+....    .......+|...|.++.+++. ...+++++.++.+++||
T Consensus       117 ~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~----~~~~~~~~h~~~v~~~~~~~~-~~~~~~~~~~~~i~~~d  191 (388)
T d1erja_         117 SPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENR----KIVMILQGHEQDIYSLDYFPS-GDKLVSGSGDRTVRIWD  191 (388)
T ss_dssp             --CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTT----EEEEEECCCSSCEEEEEECTT-SSEEEEEETTSEEEEEE
T ss_pred             ccCCCCCEEEEEECCCCCcceeccccccccccccccc----ccccccccccccccccccccc-cccccccccceeeeeee
Confidence            4478889999999999999999999999999998642    233456789999999999986 46788999999999999


Q ss_pred             CCCCeeeeeeeecCceEEEEEcC-CCCEEEEEeCCCeEEEEEccccceeeeec--------ccceeeeeEEecCCCEEEE
Q 022716           96 ARSGKCSQQAELSGENINITYKP-DGTHIAVGNRDDELTILDVRKFKPIHRRK--------FGYEVNEIAWNMTGEMFFL  166 (293)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~l~d~~~~~~~~~~~--------~~~~~~~v~~~~~~~~~~~  166 (293)
                      .++...............+.+.+ +++++++++.|+.+++||+++........        +...+..+.|++.+..+..
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s  271 (388)
T d1erja_         192 LRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVS  271 (388)
T ss_dssp             TTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEE
T ss_pred             ccccccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEE
Confidence            99988777777777777777655 78899999999999999998776554432        2346888999988876654


Q ss_pred             ecC---------------------------------CCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCC
Q 022716          167 TTG---------------------------------NAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEW  213 (293)
Q Consensus       167 ~~~---------------------------------~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~  213 (293)
                      .+.                                 ...+.+++++|++++|++|+.||.|++||+++++++.++.+|..
T Consensus       272 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~  351 (388)
T d1erja_         272 GSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN  351 (388)
T ss_dssp             EETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred             EECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCC
Confidence            332                                 23467899999999999999999999999999999999999999


Q ss_pred             CeeEEEE------ccCCCEEEEecCCCcEEEEEcC
Q 022716          214 PVRTISF------SHTGDYIASASEDLFIDISNVH  242 (293)
Q Consensus       214 ~v~~l~~------sp~~~~l~s~s~d~~i~iw~~~  242 (293)
                      +|.++++      +|++++||||+.|+.|+||+++
T Consensus       352 ~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         352 SVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             CEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             CEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence            9999875      6789999999999999999974

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.8e-32  Score=231.83  Aligned_cols=261  Identities=16%  Similarity=0.140  Sum_probs=176.5

Q ss_pred             eeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCC--ceeEEEeeCCcCCeeEE------EEcCCCCCEEEEE
Q 022716           14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHG--KVKDIELRGHADSVDQL------CWDPKHADLIATA   85 (293)
Q Consensus        14 ~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~--~~~~~~~~~h~~~i~~~------~~~~~~~~~l~s~   85 (293)
                      ....+|.+.|.++++++  ++|+|||.|++|++||.......  .........|...+..+      ........+++++
T Consensus         8 ~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~   85 (393)
T d1sq9a_           8 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATT   85 (393)
T ss_dssp             EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred             ecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEE
Confidence            34579999999999864  69999999999999997533211  11222333454443222      2222223467899


Q ss_pred             eCCCeEEEEeCCCCeeeeee---e--------ecCceEEEEEcCC-----CCEEEEEeCCCeEEEEEccccceeeeec-c
Q 022716           86 SGDKTVRLWDARSGKCSQQA---E--------LSGENINITYKPD-----GTHIAVGNRDDELTILDVRKFKPIHRRK-F  148 (293)
Q Consensus        86 ~~d~~i~vwd~~~~~~~~~~---~--------~~~~~~~~~~~~~-----~~~l~~~~~d~~i~l~d~~~~~~~~~~~-~  148 (293)
                      +.|+.|++|++.........   .        .......+++.++     +.++++++.|+++.+||+.......... .
T Consensus        86 ~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~  165 (393)
T d1sq9a_          86 SFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTL  165 (393)
T ss_dssp             ETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTT
T ss_pred             eCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeee
Confidence            99999999987544221111   0        1122345666554     4678999999999999986432211100 0


Q ss_pred             c-ceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEe------eccCCCeeEEEEc
Q 022716          149 G-YEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF------TKLEWPVRTISFS  221 (293)
Q Consensus       149 ~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~------~~~~~~v~~l~~s  221 (293)
                      . .....+.-.    ..........+.+++++|++ +||+|+.|++|++||+++++++..+      .+|..+|.+++|+
T Consensus       166 ~~~~~~~~~~~----~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~s  240 (393)
T d1sq9a_         166 NWSPTLELQGT----VESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFS  240 (393)
T ss_dssp             CCCCEEEEEEE----ECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEEC
T ss_pred             eeccceecccc----eecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccc
Confidence            0 000000000    00001123346789999987 8899999999999999998877654      4578899999999


Q ss_pred             cCCCEEEEecCCCc---EEEEEcCCCCEEEEEe--------------cCCCcceeEECCCCCeEEEEEcCCCCCCCC
Q 022716          222 HTGDYIASASEDLF---IDISNVHTGRTVHQIP--------------CRAAMNSVEWNPKYNLLAYAGDDKNKYQAD  281 (293)
Q Consensus       222 p~~~~l~s~s~d~~---i~iw~~~~~~~~~~~~--------------~~~~i~~~~~sp~~~~la~~~~d~~~~~~~  281 (293)
                      |+|++|++|+.|+.   |++||+++++.+..+.              |...|++|+|+|++++||+||.|+.+++||
T Consensus       241 pdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd  317 (393)
T d1sq9a_         241 PQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWD  317 (393)
T ss_dssp             SSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred             cccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEE
Confidence            99999999999874   8999999998877663              556799999999999999999995444443

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.6e-30  Score=213.05  Aligned_cols=218  Identities=16%  Similarity=0.218  Sum_probs=172.6

Q ss_pred             EEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeee--ecCceEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 022716           60 IELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAE--LSGENINITYKPDGTHIAVGNRDDELTILDV  137 (293)
Q Consensus        60 ~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~  137 (293)
                      ..+.||.+.|++++|+|+ +++|+||+.|+.|++||+.++++...+.  +...+.+++|+|+++ +++++.|+.+++|+.
T Consensus         6 ~~~~GH~~~V~~l~~s~d-g~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~~~~~~d~~v~~~~~   83 (299)
T d1nr0a2           6 QVRYGHNKAITALSSSAD-GKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD-LFTVSWDDHLKVVPA   83 (299)
T ss_dssp             EEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC-EEEEETTTEEEEECS
T ss_pred             eEcCCCCCCcEEEEECCC-CCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccce-eecccceeeEEEecc
Confidence            357899999999999997 4789999999999999999988776653  345677899999986 556678999999998


Q ss_pred             ccccee----eeecccceeeeeEEecCCCEEEEecC----------------CCCEEEEEECCCCCEEEEecCCCcEEEE
Q 022716          138 RKFKPI----HRRKFGYEVNEIAWNMTGEMFFLTTG----------------NAGCYCIAIDPMGRYFAVGSADSLVSLW  197 (293)
Q Consensus       138 ~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~l~~gs~d~~i~iw  197 (293)
                      ......    ........+..+.|++.+..+.....                .....+++++|+++++++|+.|+.|++|
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~  163 (299)
T d1nr0a2          84 GGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVY  163 (299)
T ss_dssp             SSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEE
T ss_pred             CCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            654321    11223455667778877765443322                2356789999999999999999999999


Q ss_pred             eCCCCEEEE-EeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEE----ecCCCcceeEECCCCCeEEEEE
Q 022716          198 DISEMLCVR-TFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQI----PCRAAMNSVEWNPKYNLLAYAG  272 (293)
Q Consensus       198 d~~~~~~~~-~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~----~~~~~i~~~~~sp~~~~la~~~  272 (293)
                      |+++..... ....|..+|.+++|+|++++|++++.|+.|++||..++..+...    .+..+|++++|+|++++||+|+
T Consensus       164 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs  243 (299)
T d1nr0a2         164 KLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGS  243 (299)
T ss_dssp             EEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceEEEc
Confidence            998776543 34568889999999999999999999999999999887665332    2456899999999999999999


Q ss_pred             cCCCCCC
Q 022716          273 DDKNKYQ  279 (293)
Q Consensus       273 ~d~~~~~  279 (293)
                      .|+.+++
T Consensus       244 ~dg~i~i  250 (299)
T d1nr0a2         244 LDNSVIV  250 (299)
T ss_dssp             TTSCEEE
T ss_pred             CCCEEEE
Confidence            8864443

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=7.1e-30  Score=211.70  Aligned_cols=209  Identities=21%  Similarity=0.343  Sum_probs=171.5

Q ss_pred             ceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeE---------------------------------
Q 022716           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKD---------------------------------   59 (293)
Q Consensus        13 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~---------------------------------   59 (293)
                      .+.+.+|..+|.+++|+|+++++++|+.|+.+++|+...........                                 
T Consensus        90 ~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (340)
T d1tbga_          90 VHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALW  169 (340)
T ss_dssp             EEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEE
T ss_pred             EEEEecccccEEeeEeeccceeeeeecccceeecccccccccccccceeccccccccccccccccccccccccccccccc
Confidence            45678999999999999999999999999999999875432111000                                 


Q ss_pred             --------EEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeeee-cCceEEEEEcCCCCEEEEEeCCC
Q 022716           60 --------IELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAEL-SGENINITYKPDGTHIAVGNRDD  130 (293)
Q Consensus        60 --------~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~  130 (293)
                              .....+...+....+.+. ..++++++.|+.|++||++++++...+.. ...+.+++|+|++++|++++.|+
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~  248 (340)
T d1tbga_         170 DIETGQQTTTFTGHTGDVMSLSLAPD-TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDA  248 (340)
T ss_dssp             ETTTTEEEEEEECCSSCEEEEEECTT-SSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             ccccccccccccccceeEeeeccccc-cceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCC
Confidence                    011223445666666664 56889999999999999999988877654 45677899999999999999999


Q ss_pred             eEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeec
Q 022716          131 ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK  210 (293)
Q Consensus       131 ~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~  210 (293)
                      .+++||++..........                  ..+...+.+++++|++++|++|+.||.|++||+.+++++.++.+
T Consensus       249 ~i~~~~~~~~~~~~~~~~------------------~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~  310 (340)
T d1tbga_         249 TCRLFDLRADQELMTYSH------------------DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAG  310 (340)
T ss_dssp             CEEEEETTTTEEEEEECC------------------TTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred             eEEEEeeccccccccccc------------------ccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcC
Confidence            999999987665443221                  12344578899999999999999999999999999999999999


Q ss_pred             cCCCeeEEEEccCCCEEEEecCCCcEEEEE
Q 022716          211 LEWPVRTISFSHTGDYIASASEDLFIDISN  240 (293)
Q Consensus       211 ~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~  240 (293)
                      |..+|.+++|+|++++|+||+.|+.|+|||
T Consensus       311 H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         311 HDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             CSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            999999999999999999999999999997

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=3.8e-29  Score=204.52  Aligned_cols=224  Identities=23%  Similarity=0.377  Sum_probs=184.5

Q ss_pred             cceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (293)
Q Consensus        12 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i   91 (293)
                      ..+.+.+|...|.+++|+|++..+++++.++.+.+|+....    .....+.+|...+.++.++|++ ..+++++.|+.+
T Consensus        51 ~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~  125 (317)
T d1vyhc1          51 FERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGF----ECIRTMHGHDHNVSSVSIMPNG-DHIVSASRDKTI  125 (317)
T ss_dssp             CCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSS----CEEECCCCCSSCEEEEEECSSS-SEEEEEETTSEE
T ss_pred             EEEEEeCCCCcEEEEeeeccccccccccccccccccccccc----ccccccccccccceeeeccCCC-ceEEeeccCcce
Confidence            45678899999999999999999999999999999987642    2334567889999999999874 678999999999


Q ss_pred             EEEeCCCCeeeeeeee-cCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeec-ccceeeeeEEecC---------
Q 022716           92 RLWDARSGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMT---------  160 (293)
Q Consensus        92 ~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~-~~~~~~~v~~~~~---------  160 (293)
                      ++||+++++....+.. .....+++++|+++.+++++.|+.+++|++++........ ....+..+.|.+.         
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  205 (317)
T d1vyhc1         126 KMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEA  205 (317)
T ss_dssp             EEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGC
T ss_pred             eEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeecc
Confidence            9999999887776654 4456788999999999999999999999998776554432 2223333333322         


Q ss_pred             ------------------------------CCE--EEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEe
Q 022716          161 ------------------------------GEM--FFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF  208 (293)
Q Consensus       161 ------------------------------~~~--~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~  208 (293)
                                                    ...  ..+..+...+.+++++|++++|++|+.||.|++||+++++++.++
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  285 (317)
T d1vyhc1         206 TGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL  285 (317)
T ss_dssp             CSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEE
T ss_pred             ccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEE
Confidence                                          111  112345567889999999999999999999999999999999999


Q ss_pred             eccCCCeeEEEEccCCCEEEEecCCCcEEEEE
Q 022716          209 TKLEWPVRTISFSHTGDYIASASEDLFIDISN  240 (293)
Q Consensus       209 ~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~  240 (293)
                      .+|..+|++++|+|++++|++|+.|+.|+|||
T Consensus       286 ~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         286 NAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             ECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             cCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            99999999999999999999999999999996

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=4.4e-29  Score=207.41  Aligned_cols=238  Identities=14%  Similarity=0.143  Sum_probs=180.4

Q ss_pred             cEEEEEECCCCCeEEEEeCCC-cEEEeecCCCCCCceeEEEeeCCc-CCeeEEEEcCC-CCCEEEEEeCCCeEEEEeCCC
Q 022716           22 KVHSVAWNCTGTKLASGSVDQ-TARVWHIEPHGHGKVKDIELRGHA-DSVDQLCWDPK-HADLIATASGDKTVRLWDARS   98 (293)
Q Consensus        22 ~v~~l~~s~~~~~l~s~~~dg-~v~iw~~~~~~~~~~~~~~~~~h~-~~i~~~~~~~~-~~~~l~s~~~d~~i~vwd~~~   98 (293)
                      .+++++|+|+|+.|+.++.+. .|+.|+.....  ......+.+|. ..|++++|+|. ++.+|+||+.||+|++||+..
T Consensus        19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~--~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~   96 (325)
T d1pgua1          19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSK--VPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTF   96 (325)
T ss_dssp             CCCCCEEETTTTEEEEEETTEEEEEECCSSCCS--SCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEE
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCC--ccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecC
Confidence            567999999999999887554 46677654322  22234566774 67999999985 356899999999999999865


Q ss_pred             Ceeeee--------ee-ecCceEEEEEcCCCCEEEEEeC--CCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEe
Q 022716           99 GKCSQQ--------AE-LSGENINITYKPDGTHIAVGNR--DDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLT  167 (293)
Q Consensus        99 ~~~~~~--------~~-~~~~~~~~~~~~~~~~l~~~~~--d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  167 (293)
                      ++....        +. ..+.+.+++|+|+++++++++.  ++.+.+|+..+.+.+...                    .
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~  156 (325)
T d1pgua1          97 DKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEV--------------------S  156 (325)
T ss_dssp             EGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEEC--------------------C
T ss_pred             CcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceee--------------------e
Confidence            542221        11 3456778999999999988764  667899998765544332                    2


Q ss_pred             cCCCCEEEEEECCCCCE-EEEecCCCcEEEEeCCCCEEEEEee---ccCCCeeEEEEccC-CCEEEEecCCCcEEEEEcC
Q 022716          168 TGNAGCYCIAIDPMGRY-FAVGSADSLVSLWDISEMLCVRTFT---KLEWPVRTISFSHT-GDYIASASEDLFIDISNVH  242 (293)
Q Consensus       168 ~~~~~~~~~~~~~~~~~-l~~gs~d~~i~iwd~~~~~~~~~~~---~~~~~v~~l~~sp~-~~~l~s~s~d~~i~iw~~~  242 (293)
                      .+...+.+++|+|++.+ +++++.|+.+++||.+.++....+.   .|...|.+++|+|+ +.+|++++.|+.|++||..
T Consensus       157 ~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~  236 (325)
T d1pgua1         157 GHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGK  236 (325)
T ss_dssp             SCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETT
T ss_pred             ecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeec
Confidence            34566788999998865 7789999999999998877665543   45678999999997 6899999999999999999


Q ss_pred             CCCEEEEEec-CCCcceeEEC---CCCCeEEEEEcCCCCCCCC
Q 022716          243 TGRTVHQIPC-RAAMNSVEWN---PKYNLLAYAGDDKNKYQAD  281 (293)
Q Consensus       243 ~~~~~~~~~~-~~~i~~~~~s---p~~~~la~~~~d~~~~~~~  281 (293)
                      +++.+..+.. ..++..+.|+   |++++|++++.|+.+++|+
T Consensus       237 ~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd  279 (325)
T d1pgua1         237 SGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWD  279 (325)
T ss_dssp             TCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEE
T ss_pred             cccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEE
Confidence            9998887753 4456666666   7899999999996555543

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.4e-28  Score=197.71  Aligned_cols=253  Identities=22%  Similarity=0.320  Sum_probs=181.9

Q ss_pred             ceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEE
Q 022716           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (293)
Q Consensus        13 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~   92 (293)
                      ++...+|...|+|++|  +|++||||+.||+|+|||+....    ....+.+|.+.|.+++|+   +++|+||+.|+.|+
T Consensus         8 i~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~----~~~~l~~H~~~V~~v~~~---~~~l~s~s~D~~i~   78 (293)
T d1p22a2           8 IHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLE----CKRILTGHTGSVLCLQYD---ERVIITGSSDSTVR   78 (293)
T ss_dssp             EECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCC----EEEEECCCSSCEEEEECC---SSEEEEEETTSCEE
T ss_pred             EeccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCc----EEEEEecCCCCEeeeecc---cceeeccccccccc
Confidence            3445688899999875  78999999999999999997532    234678999999999874   36899999999999


Q ss_pred             EEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeee----cccceeeeeE------------
Q 022716           93 LWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRR----KFGYEVNEIA------------  156 (293)
Q Consensus        93 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~----~~~~~~~~v~------------  156 (293)
                      +|++..+........... ....+.+....++++..++.+.+||++........    .....+....            
T Consensus        79 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~d  157 (293)
T d1p22a2          79 VWDVNTGEMLNTLIHHCE-AVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGD  157 (293)
T ss_dssp             EEESSSCCEEEEECCCCS-CEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETT
T ss_pred             cccccccccccccccccc-ccccccccccceeecccccceeEeeccccccccccccccccccccccceecccccccccCC
Confidence            999998876554433332 33445566678999999999999998765432211    1111222222            


Q ss_pred             -----EecCCC-E-EEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEE
Q 022716          157 -----WNMTGE-M-FFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIAS  229 (293)
Q Consensus       157 -----~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s  229 (293)
                           |+.... . ..+..+...+..+.  +++..+++++.|++|++||+++...+..+.++...+..  +++++.+|++
T Consensus       158 ~~i~~~d~~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~~~~~~l~s  233 (293)
T d1p22a2         158 RTIKVWNTSTCEFVRTLNGHKRGIACLQ--YRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC--IRFDNKRIVS  233 (293)
T ss_dssp             SEEEEEETTTCCEEEEEECCSSCEEEEE--EETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE--EECCSSEEEE
T ss_pred             CceeeecCCCCcEEEEEccccccccccc--CCCCeEEEecCCCEEEEEecccceeeeeecccceeeee--ccccceEEEE
Confidence                 222211 1 11222233344444  45678999999999999999999988888888877765  5678899999


Q ss_pred             ecCCCcEEEEEcCC---------CCEEEEEe-cCCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEe
Q 022716          230 ASEDLFIDISNVHT---------GRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYG  289 (293)
Q Consensus       230 ~s~d~~i~iw~~~~---------~~~~~~~~-~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~  289 (293)
                      |+.|+.|++||+..         ...+..+. +..+|.+++|+  +++|++||.|+        ++|||+
T Consensus       234 g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~~~l~s~s~Dg--------~i~iWD  293 (293)
T d1p22a2         234 GAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDD--------TILIWD  293 (293)
T ss_dssp             EETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--SSCEEECCSSS--------EEEEEC
T ss_pred             EcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEc--CCEEEEEecCC--------EEEEeC
Confidence            99999999999743         23455553 56689999995  56899999884        667764

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=9.5e-29  Score=205.50  Aligned_cols=256  Identities=19%  Similarity=0.247  Sum_probs=176.8

Q ss_pred             cceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (293)
Q Consensus        12 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i   91 (293)
                      ..+.+.+|.++|.+++|+|+ +.|++|+.||+|++|++....  .........+........+.+. ...+++++.|+.|
T Consensus        45 ~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~i  120 (355)
T d1nexb2          45 FLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGC--CTHVFEGHNSTVRCLDIVEYKN-IKYIVTGSRDNTL  120 (355)
T ss_dssp             EEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTE--EEEEECCCSSCEEEEEEEEETT-EEEEEEEETTSEE
T ss_pred             EEEEEECCCCCEEEEEEcCC-CEEEEEecccccccccccccc--cccccccccccccccccccccc-cceeeeecCCCcE
Confidence            45678899999999999985 589999999999999987531  1111112222333444555554 4678999999999


Q ss_pred             EEEeCCCCeeeeeeeec----------------------CceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeec-c
Q 022716           92 RLWDARSGKCSQQAELS----------------------GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-F  148 (293)
Q Consensus        92 ~vwd~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~-~  148 (293)
                      ++||+............                      .......+.++++.++++..|+.+++||+++.+...... .
T Consensus       121 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~  200 (355)
T d1nexb2         121 HVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGH  200 (355)
T ss_dssp             EEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred             EEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceeeeecccceeeeeecccccceeeeecc
Confidence            99999776533211100                      001123456788999999999999999998877655443 3


Q ss_pred             cceeeeeEEecCCCEEEEec---------------------CCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEE
Q 022716          149 GYEVNEIAWNMTGEMFFLTT---------------------GNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRT  207 (293)
Q Consensus       149 ~~~~~~v~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~  207 (293)
                      ...+..+.+++.+..+....                     +...+.+++++  +++|++|+.||+|++||+++..+.  
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~--  276 (355)
T d1nexb2         201 TDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRK--  276 (355)
T ss_dssp             SSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCEE--
T ss_pred             ccccccccccccceeeecccccceEEeeeccccccccccccccccccccccc--cceeeeeeccccccccccccccee--
Confidence            34455666666665544333                     23455667765  579999999999999999987644  


Q ss_pred             eeccCCCeeEE-EEccCCCEEEEecCCCcEEEEEcCCCCEEEEE--ecCCCcceeEECCCCCeEEEEEcCCCC
Q 022716          208 FTKLEWPVRTI-SFSHTGDYIASASEDLFIDISNVHTGRTVHQI--PCRAAMNSVEWNPKYNLLAYAGDDKNK  277 (293)
Q Consensus       208 ~~~~~~~v~~l-~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~--~~~~~i~~~~~sp~~~~la~~~~d~~~  277 (293)
                      +..|...+.++ .++|+++++++|+ |+.|++||+++++.++..  .+..+|.+++|+|+ .++++++.|+..
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~l~~g~-d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~  347 (355)
T d1nexb2         277 FSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQS  347 (355)
T ss_dssp             EEEECTTCCCCCEEEECSSEEEEEE-TTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETT-EEEEEEESSSCE
T ss_pred             cccccCCceEEEEEcCCCCEEEEEe-CCEEEEEECCCCCEEEEEecCCCCCEEEEEEcCC-eEEEEEECCCcE
Confidence            44555566655 4667777777665 889999999999887542  34568999999997 478888888543

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=3.9e-27  Score=200.55  Aligned_cols=225  Identities=15%  Similarity=0.177  Sum_probs=163.8

Q ss_pred             CeEEEEeCCCcEEEeecCCCCCCcee-EEEe-----eCCcCCeeEEEEcCCC----CCEEEEEeCCCeEEEEeCCCCee-
Q 022716           33 TKLASGSVDQTARVWHIEPHGHGKVK-DIEL-----RGHADSVDQLCWDPKH----ADLIATASGDKTVRLWDARSGKC-  101 (293)
Q Consensus        33 ~~l~s~~~dg~v~iw~~~~~~~~~~~-~~~~-----~~h~~~i~~~~~~~~~----~~~l~s~~~d~~i~vwd~~~~~~-  101 (293)
                      ..+++++.||.|++|++......... ....     ..+...+..+++.+..    ...+++++.|+.+++|++..... 
T Consensus        80 ~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~  159 (393)
T d1sq9a_          80 CLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADE  159 (393)
T ss_dssp             EEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSH
T ss_pred             cEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcc
Confidence            46789999999999997543322111 1111     1244556777776643    35788999999999999743210 


Q ss_pred             -----------e---eee----eecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCE
Q 022716          102 -----------S---QQA----ELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEM  163 (293)
Q Consensus       102 -----------~---~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~  163 (293)
                                 .   ...    .....+.+++|+|++ ++++|+.|++|++||+++.+++.......             
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~-------------  225 (393)
T d1sq9a_         160 SNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQH-------------  225 (393)
T ss_dssp             HHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC-------------
T ss_pred             cceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeeccccccccccccc-------------
Confidence                       0   000    011235679999997 88999999999999998877654432111             


Q ss_pred             EEEecCCCCEEEEEECCCCCEEEEecCCCc---EEEEeCCCCEEEEEee-------------ccCCCeeEEEEccCCCEE
Q 022716          164 FFLTTGNAGCYCIAIDPMGRYFAVGSADSL---VSLWDISEMLCVRTFT-------------KLEWPVRTISFSHTGDYI  227 (293)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~---i~iwd~~~~~~~~~~~-------------~~~~~v~~l~~sp~~~~l  227 (293)
                       .+..+...+.+++|+|++++|++|+.|++   |++||++++.++..+.             +|...|++|+|+|++++|
T Consensus       226 -~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l  304 (393)
T d1sq9a_         226 -SMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETL  304 (393)
T ss_dssp             ----CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEE
T ss_pred             -ccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCee
Confidence             12346678999999999999999999875   8999999887777663             688999999999999999


Q ss_pred             EEecCCCcEEEEEcCCCCEEEEEecC-CCcc----eeEECCCCCeEEEEE
Q 022716          228 ASASEDLFIDISNVHTGRTVHQIPCR-AAMN----SVEWNPKYNLLAYAG  272 (293)
Q Consensus       228 ~s~s~d~~i~iw~~~~~~~~~~~~~~-~~i~----~~~~sp~~~~la~~~  272 (293)
                      +|||.|++|++||+.+++.+..+..+ ..|.    .++|+|++..+++++
T Consensus       305 ~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~  354 (393)
T d1sq9a_         305 CSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG  354 (393)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCC
T ss_pred             EEECCCCEEEEEECCCCCEEEEECCcCCcccCCccEEEECCCCCEEEEcc
Confidence            99999999999999999998887643 3343    467777776665544

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.95  E-value=1.1e-25  Score=187.88  Aligned_cols=248  Identities=15%  Similarity=0.107  Sum_probs=179.9

Q ss_pred             EEECC-CCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeC-C-CeEEEEeCCCCeee
Q 022716           26 VAWNC-TGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASG-D-KTVRLWDARSGKCS  102 (293)
Q Consensus        26 l~~s~-~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~-d-~~i~vwd~~~~~~~  102 (293)
                      -.||| ||+++|+++ +|.|.+||+...   ..  .. .+|...|.+++|+|++ +.|++++. + ..|++||..+++..
T Consensus         8 ~~fSP~dG~~~a~~~-~g~v~v~d~~~~---~~--~~-~~~~~~v~~~~~spDg-~~l~~~~~~~g~~v~v~d~~~~~~~   79 (360)
T d1k32a3           8 EDFSPLDGDLIAFVS-RGQAFIQDVSGT---YV--LK-VPEPLRIRYVRRGGDT-KVAFIHGTREGDFLGIYDYRTGKAE   79 (360)
T ss_dssp             EEEEECGGGCEEEEE-TTEEEEECTTSS---BE--EE-CSCCSCEEEEEECSSS-EEEEEEEETTEEEEEEEETTTCCEE
T ss_pred             ccccCCCCCEEEEEE-CCeEEEEECCCC---cE--EE-ccCCCCEEEEEECCCC-CEEEEEEcCCCCEEEEEECCCCcEE
Confidence            45999 999999886 589999998642   22  22 3799999999999986 45555544 4 37899999998877


Q ss_pred             eeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeec-ccceeeeeEEecCCCEEEEec-------------
Q 022716          103 QQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTT-------------  168 (293)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~-------------  168 (293)
                      ........+..++|+|+|++|++++.++.+.+|++.+........ ....+..+.|+|+++.+....             
T Consensus        80 ~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~  159 (360)
T d1k32a3          80 KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQ  159 (360)
T ss_dssp             ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEE
T ss_pred             EeeCCCceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeecccc
Confidence            766677788899999999999999999999999998877665544 345667888998887765322             


Q ss_pred             -----------------CCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCE-------EEEEeecc-------------
Q 022716          169 -----------------GNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEML-------CVRTFTKL-------------  211 (293)
Q Consensus       169 -----------------~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~-------~~~~~~~~-------------  211 (293)
                                       +......++++|+|+.|++++.++.+.+||.....       .+..+..+             
T Consensus       160 ~~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  239 (360)
T d1k32a3         160 AIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRS  239 (360)
T ss_dssp             EEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGG
T ss_pred             ceeeeccccCceeeecccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCc
Confidence                             11235678999999999999999999999865432       11111111             


Q ss_pred             -----------------------CCCeeEEEEccCC-------------CEEEEecCCCcEEEEEcCCCCEEEEEecCCC
Q 022716          212 -----------------------EWPVRTISFSHTG-------------DYIASASEDLFIDISNVHTGRTVHQIPCRAA  255 (293)
Q Consensus       212 -----------------------~~~v~~l~~sp~~-------------~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~  255 (293)
                                             ......+...+++             .++++++.++.+++||+.+++....   ...
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~---~~~  316 (360)
T d1k32a3         240 MTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEV---KNN  316 (360)
T ss_dssp             GSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEE---EEE
T ss_pred             CcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEEEe---cCC
Confidence                                   0011223333322             2456667789999999988765332   235


Q ss_pred             cceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeeec
Q 022716          256 MNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN  292 (293)
Q Consensus       256 i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~~  292 (293)
                      |.+++|||||++|++++.|+        .+|+|++++
T Consensus       317 v~~~~~SpDG~~l~~~~~Dg--------~i~v~d~~~  345 (360)
T d1k32a3         317 LTDLRLSADRKTVMVRKDDG--------KIYTFPLEK  345 (360)
T ss_dssp             EEEEEECTTSCEEEEEETTS--------CEEEEESSC
T ss_pred             cCEEEECCCCCEEEEEECCC--------eEEEEECCC
Confidence            88999999999999999885        556666543

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.94  E-value=2.5e-24  Score=185.03  Aligned_cols=276  Identities=11%  Similarity=0.042  Sum_probs=186.8

Q ss_pred             ceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEE-eeCCcCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIE-LRGHADSVDQLCWDPKHADLIATASGDKTV   91 (293)
Q Consensus        13 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~-~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i   91 (293)
                      .+.+..| ..+..++|||||++|++++.||+|++||+..........+. ..+|...+.++.|+|++..+++++..++.+
T Consensus        55 ~~~l~~g-~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v  133 (426)
T d1hzua2          55 VKVIDTG-YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQF  133 (426)
T ss_dssp             EEEEECC-SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEE
T ss_pred             EEEEeCC-CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeE
Confidence            3556555 46999999999999999999999999999754322222211 224666667778888876566777789999


Q ss_pred             EEEeCCCCeeeeeeee------------cCceEEEEEcCCCCEEEEEeC-CCeEEEEEcccccee--eeecccceeeeeE
Q 022716           92 RLWDARSGKCSQQAEL------------SGENINITYKPDGTHIAVGNR-DDELTILDVRKFKPI--HRRKFGYEVNEIA  156 (293)
Q Consensus        92 ~vwd~~~~~~~~~~~~------------~~~~~~~~~~~~~~~l~~~~~-d~~i~l~d~~~~~~~--~~~~~~~~~~~v~  156 (293)
                      ++||..++.+......            .+....+..+++++.++.... .+.+.+++.......  .....+..+..+.
T Consensus       134 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (426)
T d1hzua2         134 AIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGG  213 (426)
T ss_dssp             EEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEE
T ss_pred             EEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeee
Confidence            9999998876654332            222345677788877776654 356666666554432  2334556677888


Q ss_pred             EecCCCEEEEecCCCCEEEEEE------------------------C-CCCC--EEEEecCCCcEEEEeCCC-------C
Q 022716          157 WNMTGEMFFLTTGNAGCYCIAI------------------------D-PMGR--YFAVGSADSLVSLWDISE-------M  202 (293)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~------------------------~-~~~~--~l~~gs~d~~i~iwd~~~-------~  202 (293)
                      +++.++.++..........+..                        . +...  ..+..+.|+.+.+|+...       +
T Consensus       214 ~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~  293 (426)
T d1hzua2         214 WDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAW  293 (426)
T ss_dssp             ECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBT
T ss_pred             ECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccc
Confidence            9998887776654433221111                        1 1111  223445678888887643       3


Q ss_pred             EEEEEeeccCCCeeEEEEccCCCEEE-------EecCCCcEEEEEcCCCCEEEEE----------ecCCCcceeEECCCC
Q 022716          203 LCVRTFTKLEWPVRTISFSHTGDYIA-------SASEDLFIDISNVHTGRTVHQI----------PCRAAMNSVEWNPKY  265 (293)
Q Consensus       203 ~~~~~~~~~~~~v~~l~~sp~~~~l~-------s~s~d~~i~iw~~~~~~~~~~~----------~~~~~i~~~~~sp~~  265 (293)
                      +....+.+|...+..++|+|++++|+       +++.|++|+|||+++++...++          .+...+..++|||||
T Consensus       294 ~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDG  373 (426)
T d1hzua2         294 KKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRG  373 (426)
T ss_dssp             SEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSS
T ss_pred             eEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCC
Confidence            66788899999999999999999999       4567899999999998765443          123457788999999


Q ss_pred             CeEEEEE-----cCCCCCCCCcceEEEEe
Q 022716          266 NLLAYAG-----DDKNKYQADEGVFRIYG  289 (293)
Q Consensus       266 ~~la~~~-----~d~~~~~~~~~~~~~~~  289 (293)
                      +++..+.     .++.+.+||..++|++.
T Consensus       374 k~i~vs~~~~~~~~~~i~v~D~~T~k~~~  402 (426)
T d1hzua2         374 DEVWFSVWNGKNDSSALVVVDDKTLKLKA  402 (426)
T ss_dssp             SEEEEEECCCTTSCCEEEEEETTTTEEEE
T ss_pred             CEEEEEEecCCCCCCeEEEEECCCCeEEE
Confidence            9774432     34446666666655554

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=6.9e-25  Score=178.10  Aligned_cols=221  Identities=18%  Similarity=0.182  Sum_probs=153.3

Q ss_pred             cCcccccccceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCc-eeE-----------------------
Q 022716            4 SSIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGK-VKD-----------------------   59 (293)
Q Consensus         4 ~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~-~~~-----------------------   59 (293)
                      ..|..|+... ...+|...|.+++|+++ ..+++++.|+++++|++....... ...                       
T Consensus        31 g~v~~Wd~~~-~~~~h~~~V~~~~~~~~-~~~~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (287)
T d1pgua2          31 GRIMEWSSSS-MHQDHSNLIVSLDNSKA-QEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQS  108 (287)
T ss_dssp             SCEEETTTTE-EECCCCSCEEEEECCST-TCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEET
T ss_pred             CeEEEEECCC-CCCCCCCCEEEEEecCC-CeEEEEeeccccccccccccccccceeeeeeccCCceEEEeecccceeeec
Confidence            3455565543 35689999999999875 468999999999999874321000 000                       


Q ss_pred             -----EEeeCCcCCeeEEEEcCCCCCEEEEEeCC-CeEEEEeCCCCeeeeeee--ecCceEEEEEcCCCCEEEEEeCCCe
Q 022716           60 -----IELRGHADSVDQLCWDPKHADLIATASGD-KTVRLWDARSGKCSQQAE--LSGENINITYKPDGTHIAVGNRDDE  131 (293)
Q Consensus        60 -----~~~~~h~~~i~~~~~~~~~~~~l~s~~~d-~~i~vwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~d~~  131 (293)
                           .....+...+.  ++++.+ ..++.++.+ +.+++|++..........  ..+.+.+++|+|++++|++|+.|+.
T Consensus       109 ~~~~~~~~~~~~~~~~--~~~~~~-~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~  185 (287)
T d1pgua2         109 FTGDIIKSVRLNSPGS--AVSLSQ-NYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGK  185 (287)
T ss_dssp             TTCCEEEEEECSSCEE--EEEECS-SEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             cceeeeeeccccceee--eeeccC-cceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCcccccccccccc
Confidence                 00001122233  334444 345555554 579999987655444332  3456788999999999999999999


Q ss_pred             EEEEEccccceeeee--cccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCC-CEEEEEe
Q 022716          132 LTILDVRKFKPIHRR--KFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISE-MLCVRTF  208 (293)
Q Consensus       132 i~l~d~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~-~~~~~~~  208 (293)
                      +++||+.+.......  .+...+..+.|+|.+..           .....+++.++++|+.|++|++||+++ .+.+..+
T Consensus       186 i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~-----------~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~  254 (287)
T d1pgua2         186 ILLYDLQSREVKTSRWAFRTSKINAISWKPAEKG-----------ANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKAL  254 (287)
T ss_dssp             EEEEETTTTEEEECCSCCCSSCEEEEEECCCC-----------------CCSCCEEEEEETTSCEEEEESSCTTCCEEET
T ss_pred             ccceeecccccccccccccccccceeeecccccc-----------cccccCCCCeeEeecCCCeEEEEECCCCCeEEEEe
Confidence            999999876654322  23445666666655432           223346778999999999999999866 5567777


Q ss_pred             eccCCCeeEEEEccCCCEEEEecCCCcEEEEEc
Q 022716          209 TKLEWPVRTISFSHTGDYIASASEDLFIDISNV  241 (293)
Q Consensus       209 ~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~  241 (293)
                      .+|...|++++|+|++ .|++++.|+.|++|++
T Consensus       255 ~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         255 NAHKDGVNNLLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             TSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred             CCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence            8899999999999986 5889999999999986

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=7.3e-24  Score=174.71  Aligned_cols=229  Identities=21%  Similarity=0.277  Sum_probs=127.7

Q ss_pred             cCcccccc----cceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCC--------ceeE------------
Q 022716            4 SSIPFKNL----HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHG--------KVKD------------   59 (293)
Q Consensus         4 ~~~~~~~~----~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~--------~~~~------------   59 (293)
                      ..|.+|+.    ..+.+.+|.+.|.+++|+|+  +|++|+.|+.+++|+.......        ....            
T Consensus        37 g~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (342)
T d2ovrb2          37 NTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGS  114 (342)
T ss_dssp             SCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEE
T ss_pred             CeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceecccccccccccccceecccccceeEeeeecccccccccc
Confidence            34555543    45678899999999999874  8999999999999987532100        0000            


Q ss_pred             ----------------EEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeeeecCc-eEEEEEcCCCCE
Q 022716           60 ----------------IELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGE-NINITYKPDGTH  122 (293)
Q Consensus        60 ----------------~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~  122 (293)
                                      ..+..+.....  ...+. ...+++++.|+.+++||.....+...+..+.. ...+  .+++..
T Consensus       115 ~d~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~  189 (342)
T d2ovrb2         115 RDATLRVWDIETGQCLHVLMGHVAAVR--CVQYD-GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSL--QFDGIH  189 (342)
T ss_dssp             TTSEEEEEESSSCCEEEEEECCSSCEE--EEEEC-SSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEE--EECSSE
T ss_pred             cceeEEEeecccccceeeeecccccce--eeccc-cceeeeecCCCeEEEeecccceeeEEEcCcccccccc--cCCCCE
Confidence                            00000000000  00011 12333444444444444444444433332222 2112  123344


Q ss_pred             EEEEeCCCeEEEEEccccceeeeecc-cceeeeeEEecCCCEEEEe------------------------cCCCCEEEEE
Q 022716          123 IAVGNRDDELTILDVRKFKPIHRRKF-GYEVNEIAWNMTGEMFFLT------------------------TGNAGCYCIA  177 (293)
Q Consensus       123 l~~~~~d~~i~l~d~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~------------------------~~~~~~~~~~  177 (293)
                      +++++.|+.+++||++..+++..... ...+..+.+++  ..++..                        .+...+.+++
T Consensus       190 l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  267 (342)
T d2ovrb2         190 VVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQ  267 (342)
T ss_dssp             EEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET--TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEE
T ss_pred             EEEEeCCCeEEEeecccceeeeEecccccceeEEecCC--CEEEEEcCCCEEEEEecccccccccccccceeeeceeecc
Confidence            44444444444444444443333221 11222222211  111111                        1122344555


Q ss_pred             ECCCCCEEEEecCCCcEEEEeCCCCEEEEEee-----ccCCCeeEEEEccCCCEEEEecCCCc----EEEEEcCC
Q 022716          178 IDPMGRYFAVGSADSLVSLWDISEMLCVRTFT-----KLEWPVRTISFSHTGDYIASASEDLF----IDISNVHT  243 (293)
Q Consensus       178 ~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~-----~~~~~v~~l~~sp~~~~l~s~s~d~~----i~iw~~~~  243 (293)
                      +  +++++++|+.||+|++||+++++.++++.     +|..+|.+++|+|++.+||+|+.||+    |++||+..
T Consensus       268 ~--~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         268 F--NKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             E--CSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             c--CCCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence            4  56799999999999999999998887764     46678999999999999999999985    89999853

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.93  E-value=4.3e-24  Score=178.16  Aligned_cols=223  Identities=9%  Similarity=0.055  Sum_probs=168.2

Q ss_pred             CccccEEEEEECCCCCeEEEEeCCC--cEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEe
Q 022716           18 GHKKKVHSVAWNCTGTKLASGSVDQ--TARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWD   95 (293)
Q Consensus        18 ~h~~~v~~l~~s~~~~~l~s~~~dg--~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd   95 (293)
                      +|...|.+++|+|||++|++++.|.  .|++||++..   .  ...+..|...|.+++|+|++ ..|++++.++.+++|+
T Consensus        40 ~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~---~--~~~~~~~~~~v~~~~~spdg-~~l~~~~~~~~~~~~~  113 (360)
T d1k32a3          40 PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTG---K--AEKFEENLGNVFAMGVDRNG-KFAVVANDRFEIMTVD  113 (360)
T ss_dssp             SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTC---C--EEECCCCCCSEEEEEECTTS-SEEEEEETTSEEEEEE
T ss_pred             cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCC---c--EEEeeCCCceEEeeeecccc-cccceecccccccccc
Confidence            7999999999999999998877654  7999998753   2  23467899999999999974 6899999999999999


Q ss_pred             CCCCeeeeeeeec-CceEEEEEcCCCCEEEEEe----------CCCeEEEEEccccceeeeecccceeeeeEEecCCCEE
Q 022716           96 ARSGKCSQQAELS-GENINITYKPDGTHIAVGN----------RDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMF  164 (293)
Q Consensus        96 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~----------~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~  164 (293)
                      ..+++.......+ ....+++|+|+|++|+.+.          .++.+.+||+++.+.............+.|+++++.+
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l  193 (360)
T d1k32a3         114 LETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNL  193 (360)
T ss_dssp             TTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEE
T ss_pred             ccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeecccccccccccccCCCCEE
Confidence            9998877665543 4556799999999998654          3456899999887766665566666777888877765


Q ss_pred             EEecCCC----------------------------------------------------------------CEEEEEECC
Q 022716          165 FLTTGNA----------------------------------------------------------------GCYCIAIDP  180 (293)
Q Consensus       165 ~~~~~~~----------------------------------------------------------------~~~~~~~~~  180 (293)
                      ...+...                                                                ....+...+
T Consensus       194 ~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (360)
T d1k32a3         194 YYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLE  273 (360)
T ss_dssp             EEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECS
T ss_pred             EEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecC
Confidence            5432210                                                                011222222


Q ss_pred             CC-------------CEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEE
Q 022716          181 MG-------------RYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTV  247 (293)
Q Consensus       181 ~~-------------~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~  247 (293)
                      ++             .++++++.++.|++||+.+++..    .+...|.+++|||||++|++++.||.|++||+.++...
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~----~~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~  349 (360)
T d1k32a3         274 SSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT----EVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDE  349 (360)
T ss_dssp             SEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEE----EEEEEEEEEEECTTSCEEEEEETTSCEEEEESSCTTSC
T ss_pred             CCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEE----EecCCcCEEEECCCCCEEEEEECCCeEEEEECCCCCcc
Confidence            21             23455667889999999887532    33456899999999999999999999999999998766


Q ss_pred             EEE
Q 022716          248 HQI  250 (293)
Q Consensus       248 ~~~  250 (293)
                      ..+
T Consensus       350 ~~~  352 (360)
T d1k32a3         350 RTV  352 (360)
T ss_dssp             EEC
T ss_pred             eEE
Confidence            554

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.92  E-value=1.2e-21  Score=159.25  Aligned_cols=241  Identities=14%  Similarity=0.145  Sum_probs=182.1

Q ss_pred             EEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeeeecCceEEE
Q 022716           35 LASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI  114 (293)
Q Consensus        35 l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~  114 (293)
                      .++++.|++|.+||+++..  ....  +.. ......++++|++..++++++.++.|++||+.+++.+..+.....+..+
T Consensus         5 yV~~~~~~~v~v~D~~t~~--~~~~--i~~-g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~~~~   79 (301)
T d1l0qa2           5 YIANSESDNISVIDVTSNK--VTAT--IPV-GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGV   79 (301)
T ss_dssp             EEEETTTTEEEEEETTTTE--EEEE--EEC-SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEE
T ss_pred             EEEECCCCEEEEEECCCCe--EEEE--EEC-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccccccc
Confidence            3677889999999997541  2222  222 2346789999986556678888999999999999988888877788899


Q ss_pred             EEcCCCCEEEEEe-CCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCC---------------------CC
Q 022716          115 TYKPDGTHIAVGN-RDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGN---------------------AG  172 (293)
Q Consensus       115 ~~~~~~~~l~~~~-~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---------------------~~  172 (293)
                      ++++++..+++.. .++.+.+|+..+.+.............+.+++++..++.....                     ..
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (301)
T d1l0qa2          80 AVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRS  159 (301)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSS
T ss_pred             ccccccccccccccccceeeecccccceeeeeccccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCCC
Confidence            9999998766554 5778999999888777776666667778888887766544322                     23


Q ss_pred             EEEEEECCCCCEEEEecCC-CcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEec---CCCcEEEEEcCCCCEEE
Q 022716          173 CYCIAIDPMGRYFAVGSAD-SLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASAS---EDLFIDISNVHTGRTVH  248 (293)
Q Consensus       173 ~~~~~~~~~~~~l~~gs~d-~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s---~d~~i~iw~~~~~~~~~  248 (293)
                      +..++++|+++.+++++.+ +.+.+|+........... ....+..++|++++..++.++   .++.|++||..+++.+.
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~  238 (301)
T d1l0qa2         160 PKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITA  238 (301)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEE
T ss_pred             ceEEEeeccccceeeecccccccccccccceeeeeccc-ccCCcceeeccccccccccccccceeeeeeeeecCCCeEEE
Confidence            5678899999887777655 667788887777665554 345678899999999876553   45789999999999888


Q ss_pred             EEecCCCcceeEECCCCCeE-EEEEcCCCCCCCC
Q 022716          249 QIPCRAAMNSVEWNPKYNLL-AYAGDDKNKYQAD  281 (293)
Q Consensus       249 ~~~~~~~i~~~~~sp~~~~l-a~~~~d~~~~~~~  281 (293)
                      .++....+..++|+|+|++| ++++.|+.+.+||
T Consensus       239 ~~~~~~~~~~va~spdg~~l~va~~~~~~i~v~D  272 (301)
T d1l0qa2         239 RIPVGPDPAGIAVTPDGKKVYVALSFCNTVSVID  272 (301)
T ss_dssp             EEECCSSEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             EEcCCCCEEEEEEeCCCCEEEEEECCCCeEEEEE
Confidence            88877788999999999986 5555555444443

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.92  E-value=1.6e-21  Score=158.43  Aligned_cols=226  Identities=15%  Similarity=0.154  Sum_probs=179.2

Q ss_pred             ccEEEEEECCCCCeE-EEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCC
Q 022716           21 KKVHSVAWNCTGTKL-ASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG   99 (293)
Q Consensus        21 ~~v~~l~~s~~~~~l-~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~   99 (293)
                      ..+..++|+|||++| ++++.++.|++||+...   . ....+..|. .+..+.+++++..+++++..++.+.+|+..++
T Consensus        32 ~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~---~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (301)
T d1l0qa2          32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATN---N-VIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSN  106 (301)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTT---E-EEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred             CCceEEEEeCCCCEEEEEECCCCEEEEEECCCC---c-eeeeeeccc-cccccccccccccccccccccceeeecccccc
Confidence            567899999999987 56778999999999753   1 222344554 45788899887667777888999999999999


Q ss_pred             eeeeeeeecCceEEEEEcCCCCEEEEEe-CCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCC--------
Q 022716          100 KCSQQAELSGENINITYKPDGTHIAVGN-RDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGN--------  170 (293)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--------  170 (293)
                      +....+.....+..+.++|++..++... .++.+.+|+..+...............+.+++.+..++.....        
T Consensus       107 ~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (301)
T d1l0qa2         107 TVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVID  186 (301)
T ss_dssp             EEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             eeeeeccccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCCCceEEEeeccccceeeeccccccccccc
Confidence            8888888888888999999999876554 5788999999988877777666667788888887766655432        


Q ss_pred             -------------CCEEEEEECCCCCEEEEec---CCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEE-EEecCC
Q 022716          171 -------------AGCYCIAIDPMGRYFAVGS---ADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYI-ASASED  233 (293)
Q Consensus       171 -------------~~~~~~~~~~~~~~l~~gs---~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l-~s~s~d  233 (293)
                                   ..+..++++++++.++++.   .++.|.+||+.+++.+..+..+ ..+..++|+|||++| ++++.|
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~-~~~~~va~spdg~~l~va~~~~  265 (301)
T d1l0qa2         187 TVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG-PDPAGIAVTPDGKKVYVALSFC  265 (301)
T ss_dssp             TTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTT
T ss_pred             ccceeeeecccccCCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcCC-CCEEEEEEeCCCCEEEEEECCC
Confidence                         2245678999998876553   3468999999999888777544 467999999999987 688899


Q ss_pred             CcEEEEEcCCCCEEEEEec
Q 022716          234 LFIDISNVHTGRTVHQIPC  252 (293)
Q Consensus       234 ~~i~iw~~~~~~~~~~~~~  252 (293)
                      +.|++||+.+++.+..++.
T Consensus       266 ~~i~v~D~~t~~~~~~~~v  284 (301)
T d1l0qa2         266 NTVSVIDTATNTITATMAV  284 (301)
T ss_dssp             TEEEEEETTTTEEEEEEEC
T ss_pred             CeEEEEECCCCeEEEEEeC
Confidence            9999999999998887764

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.91  E-value=6.3e-24  Score=182.77  Aligned_cols=271  Identities=9%  Similarity=-0.002  Sum_probs=169.2

Q ss_pred             ceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEE-eeCCcCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIE-LRGHADSVDQLCWDPKHADLIATASGDKTV   91 (293)
Q Consensus        13 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~-~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i   91 (293)
                      .+.+..| ..++.++|||||++|++++.||+|++||+..........+. ..+|...+.+..|+|++..++++++.++.+
T Consensus        55 ~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v  133 (432)
T d1qksa2          55 KTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQY  133 (432)
T ss_dssp             EEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEE
T ss_pred             EEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeE
Confidence            4455555 36999999999999999999999999999764322222222 224555566667788765567889999999


Q ss_pred             EEEeCCCCeeeeeeee------------cCceEEEEEcCCCCEEEE-EeCCCeEEEEEccccceee--eecccceeeeeE
Q 022716           92 RLWDARSGKCSQQAEL------------SGENINITYKPDGTHIAV-GNRDDELTILDVRKFKPIH--RRKFGYEVNEIA  156 (293)
Q Consensus        92 ~vwd~~~~~~~~~~~~------------~~~~~~~~~~~~~~~l~~-~~~d~~i~l~d~~~~~~~~--~~~~~~~~~~v~  156 (293)
                      ++||..+++.......            .+....+.++|+|+.+++ ...++++.+||..+.+...  ....+.....+.
T Consensus       134 ~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~  213 (432)
T d1qksa2         134 VIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGG  213 (432)
T ss_dssp             EEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEE
T ss_pred             EEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccce
Confidence            9999999887654432            233456889999987654 4567899999988765433  334455567788


Q ss_pred             EecCCCEEEEecCCCCE---------------------------EEEEECCCCCEEEEec-CCCcEEEEeCCCCEEEEEe
Q 022716          157 WNMTGEMFFLTTGNAGC---------------------------YCIAIDPMGRYFAVGS-ADSLVSLWDISEMLCVRTF  208 (293)
Q Consensus       157 ~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~l~~gs-~d~~i~iwd~~~~~~~~~~  208 (293)
                      ++|++..++..+.....                           ........+...++.. .++.|.+|+.....    .
T Consensus       214 ~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~----~  289 (432)
T d1qksa2         214 LDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEG----H  289 (432)
T ss_dssp             ECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTT----C
T ss_pred             ECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEeccccccc----c
Confidence            88888766655432211                           1111222223333332 35667777654321    1


Q ss_pred             eccCCCeeEEEEc-----------------------------------cCCCEEEEecCCCcEEEEEcCCCCEEEEEecC
Q 022716          209 TKLEWPVRTISFS-----------------------------------HTGDYIASASEDLFIDISNVHTGRTVHQIPCR  253 (293)
Q Consensus       209 ~~~~~~v~~l~~s-----------------------------------p~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~  253 (293)
                      ..+.+.+....++                                   ||++.|++++.|+.+++|+..++..+.  .+.
T Consensus       290 ~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~vpDg~~la~~s~d~~~k~w~~~~~~~l~--~~~  367 (432)
T d1qksa2         290 PDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGIT--EGQ  367 (432)
T ss_dssp             TTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCC--SSC
T ss_pred             cccccEEEEEEEcCCCCeEEEEecCCccceeecccCCCCCCeeeEEEEEechhhcccccCCceEecccccccccC--CCC
Confidence            1122222222222                                   666666666667777777654332111  234


Q ss_pred             CCcceeEECCCCCeEEEEEc-----CCCCCCCCcceEEEEee
Q 022716          254 AAMNSVEWNPKYNLLAYAGD-----DKNKYQADEGVFRIYGF  290 (293)
Q Consensus       254 ~~i~~~~~sp~~~~la~~~~-----d~~~~~~~~~~~~~~~~  290 (293)
                      ..+..++|||||++++++..     ++.+.++|.-++|+|..
T Consensus       368 ~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~~~  409 (432)
T d1qksa2         368 PRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHV  409 (432)
T ss_dssp             CEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEE
T ss_pred             CcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECCCceEEeE
Confidence            45778999999998866642     34466667767776654

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=8.4e-22  Score=158.67  Aligned_cols=209  Identities=17%  Similarity=0.258  Sum_probs=150.6

Q ss_pred             eeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeeee-cCceEEEEEcCCCCEEEEEeCCCeEEEEEcccc
Q 022716           62 LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKF  140 (293)
Q Consensus        62 ~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~  140 (293)
                      ...|...|+++++  + +++|+||+.|++|++||+.++++...+.. .+.+.+++|  ++++|++|+.|+.+++|+++..
T Consensus        11 ~~~~~~~V~c~~~--d-~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~   85 (293)
T d1p22a2          11 RSETSKGVYCLQY--D-DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTG   85 (293)
T ss_dssp             CCSSCCCEEEEEC--C-SSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSC
T ss_pred             cCCCCCCEEEEEE--c-CCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeecccccccccccccccc
Confidence            4567888998876  3 46899999999999999999998887764 445656654  6789999999999999999876


Q ss_pred             ceeeeecccceeee------------------eEEecCCC-----EEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEE
Q 022716          141 KPIHRRKFGYEVNE------------------IAWNMTGE-----MFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLW  197 (293)
Q Consensus       141 ~~~~~~~~~~~~~~------------------v~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iw  197 (293)
                      ..............                  ..|+....     ......+...+.++.+  ....+++++.|+.|++|
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~s~d~~i~~~  163 (293)
T d1p22a2          86 EMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVW  163 (293)
T ss_dssp             CEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEE
T ss_pred             cccccccccccccccccccccceeecccccceeEeecccccccccccccccccccccccee--cccccccccCCCceeee
Confidence            55443322111100                  11221110     1111222334444443  45678899999999999


Q ss_pred             eCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEecCCCcceeEECCCCCeEEEEEcCCCC
Q 022716          198 DISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNK  277 (293)
Q Consensus       198 d~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~d~~~  277 (293)
                      |+++++.+..+.++...+..+.++  +.++++++.|+.|++||..+.+.+......... ...+++++++|++++.|+.+
T Consensus       164 d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-v~~~~~~~~~l~sg~~dg~i  240 (293)
T d1p22a2         164 NTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEEL-VRCIRFDNKRIVSGAYDGKI  240 (293)
T ss_dssp             ETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSC-EEEEECCSSEEEEEETTSCE
T ss_pred             cCCCCcEEEEEcccccccccccCC--CCeEEEecCCCEEEEEecccceeeeeeccccee-eeeccccceEEEEEcCCCEE
Confidence            999999999999888888887765  568999999999999999999888777544332 23467788999999998654


Q ss_pred             CCC
Q 022716          278 YQA  280 (293)
Q Consensus       278 ~~~  280 (293)
                      ++|
T Consensus       241 ~iw  243 (293)
T d1p22a2         241 KVW  243 (293)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.91  E-value=5.7e-22  Score=163.48  Aligned_cols=245  Identities=11%  Similarity=0.054  Sum_probs=175.5

Q ss_pred             CeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeeeecCc--
Q 022716           33 TKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGE--  110 (293)
Q Consensus        33 ~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~--  110 (293)
                      ++|++++.|++|++||+.+.  .....+....+...+..++++|++..++++++.++.|.+||+.+++.+........  
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~--~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~   79 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKM--AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEE   79 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTT--EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTE
T ss_pred             eEEEEEcCCCEEEEEECCCC--eEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcc
Confidence            47999999999999999753  22333344444456788999998654557778899999999999988776654332  


Q ss_pred             ----eEEEEEcCCCCEEEEEe------------CCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEE
Q 022716          111 ----NINITYKPDGTHIAVGN------------RDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCY  174 (293)
Q Consensus       111 ----~~~~~~~~~~~~l~~~~------------~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  174 (293)
                          +..++++|++++++++.            .+..+.+||..+............+..+.+++++..++.......+.
T Consensus        80 ~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~  159 (337)
T d1pbyb_          80 RVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVM  159 (337)
T ss_dssp             EEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESSSEEEE
T ss_pred             cccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEcCCccee
Confidence                23589999999998776            45678889998887777766666677788888887766554331111


Q ss_pred             ---------EE---------EECCCCC------------------------EEEEecCCCcEEEEeCCCCEEEE-Eeecc
Q 022716          175 ---------CI---------AIDPMGR------------------------YFAVGSADSLVSLWDISEMLCVR-TFTKL  211 (293)
Q Consensus       175 ---------~~---------~~~~~~~------------------------~l~~gs~d~~i~iwd~~~~~~~~-~~~~~  211 (293)
                               .+         .+.|++.                        ....++.++.+.+||..++.... .+..+
T Consensus       160 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (337)
T d1pbyb_         160 DPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIM  239 (337)
T ss_dssp             ETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEEC
T ss_pred             eeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCC
Confidence                     00         0111111                        11112334457888887765443 34456


Q ss_pred             CCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEecCCCcceeEECCCCCeEEEEEcCCCCCCCC
Q 022716          212 EWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQAD  281 (293)
Q Consensus       212 ~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~  281 (293)
                      ...+..++++|++.+++.+  ++.|++||..+++.+..+.....+.+++|+|+|++|++++.|+++.+||
T Consensus       240 ~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D  307 (337)
T d1pbyb_         240 DVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYD  307 (337)
T ss_dssp             SSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEE
T ss_pred             CcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence            6678889999999998776  5889999999999999888888899999999999999998875444443

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=4.2e-23  Score=169.75  Aligned_cols=220  Identities=13%  Similarity=0.142  Sum_probs=149.5

Q ss_pred             ecCccccEEEEEECCCC-CeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCC-eeEEEEcCCCCCEEEEEeCCCeEEE
Q 022716           16 YTGHKKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADS-VDQLCWDPKHADLIATASGDKTVRL   93 (293)
Q Consensus        16 ~~~h~~~v~~l~~s~~~-~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~-i~~~~~~~~~~~~l~s~~~d~~i~v   93 (293)
                      ..+|.++|.+++|+|++ ..|++|+.||.|++|++.....   . .....+... .....+.+ +...+++++.|+.+++
T Consensus        52 ~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~---~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  126 (342)
T d1yfqa_          52 SLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPS---F-QALTNNEANLGICRICKY-GDDKLIAASWDGLIEV  126 (342)
T ss_dssp             EEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSS---E-EECBSCCCCSCEEEEEEE-TTTEEEEEETTSEEEE
T ss_pred             ecCCCCCEEEEEEeCCCCCEEEEcccccceeeeecccccc---c-cccccccccccccccccc-ccccccccccccccce
Confidence            34799999999999875 5789999999999999875321   1 122233333 33333333 4568899999999999


Q ss_pred             EeCCCCeeeeeee--e-----cCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeec----ccceeeeeEEec---
Q 022716           94 WDARSGKCSQQAE--L-----SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK----FGYEVNEIAWNM---  159 (293)
Q Consensus        94 wd~~~~~~~~~~~--~-----~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~----~~~~~~~v~~~~---  159 (293)
                      ||++.+.......  .     ........+.+.+..+++++.|+.+++||++.........    .........+.+   
T Consensus       127 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (342)
T d1yfqa_         127 IDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQ  206 (342)
T ss_dssp             ECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGG
T ss_pred             eeccccccceeeecccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCC
Confidence            9986543222111  1     1122345677888899999999999999987654322211    111111112111   


Q ss_pred             --------CCCEEEE--------------------------ecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEE
Q 022716          160 --------TGEMFFL--------------------------TTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCV  205 (293)
Q Consensus       160 --------~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~  205 (293)
                              ++.....                          ..+...+.+++|+|++++||+|+.||.|++||+++++++
T Consensus       207 ~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l  286 (342)
T d1yfqa_         207 EGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKI  286 (342)
T ss_dssp             CEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEE
T ss_pred             CEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEE
Confidence                    1111110                          011234679999999999999999999999999999998


Q ss_pred             EEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEc
Q 022716          206 RTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNV  241 (293)
Q Consensus       206 ~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~  241 (293)
                      .++..+. ++..++|+|++++|++|+.|..+++|..
T Consensus       287 ~~~~~~~-~~~~~~~s~~~~~l~~a~sdd~~~~~~~  321 (342)
T d1yfqa_         287 KNFAKFN-EDSVVKIACSDNILCLATSDDTFKTNAA  321 (342)
T ss_dssp             EECCCCS-SSEEEEEEECSSEEEEEEECTHHHHCSS
T ss_pred             EEecCCC-CCEEEEEEeCCCEEEEEEcCCcEEEeee
Confidence            8876543 5667889999999999999988877764

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.89  E-value=9.3e-22  Score=162.74  Aligned_cols=253  Identities=10%  Similarity=-0.043  Sum_probs=169.5

Q ss_pred             EEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeee
Q 022716           26 VAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQA  105 (293)
Q Consensus        26 l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~  105 (293)
                      ++|++++++|++++.|++|.+||+...  .....+.+ .|...+..++|+|++..+++++..++.|.+||+.+++.....
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~--~~~~t~~~-~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~   78 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASD--TVYKSCVM-PDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHA   78 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTT--EEEEEEEC-SSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCC--CEEEEEEc-CCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeee
Confidence            578999999999999999999999753  12222222 345567899999987656677888999999999999877655


Q ss_pred             eecC-------ceEEEEEcCCCCEEEEEe------------CCCeEEEEEccccceeeeec---ccceeeeeEEecCCCE
Q 022716          106 ELSG-------ENINITYKPDGTHIAVGN------------RDDELTILDVRKFKPIHRRK---FGYEVNEIAWNMTGEM  163 (293)
Q Consensus       106 ~~~~-------~~~~~~~~~~~~~l~~~~------------~d~~i~l~d~~~~~~~~~~~---~~~~~~~v~~~~~~~~  163 (293)
                      ....       .+..++++|||++++++.            .+..+.+||..+........   .+.....+.+.+.+..
T Consensus        79 ~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (346)
T d1jmxb_          79 NLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSL  158 (346)
T ss_dssp             ESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCE
T ss_pred             cccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEE
Confidence            4332       244689999999988765            46778889887654332211   1112222222222222


Q ss_pred             EEEe-----------------cCCCCEEEEEEC--------------------------CCCCEEEEecCCCcEEEEeCC
Q 022716          164 FFLT-----------------TGNAGCYCIAID--------------------------PMGRYFAVGSADSLVSLWDIS  200 (293)
Q Consensus       164 ~~~~-----------------~~~~~~~~~~~~--------------------------~~~~~l~~gs~d~~i~iwd~~  200 (293)
                      +...                 ........+.++                          +....++++..+..+.+||..
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (346)
T d1jmxb_         159 YVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLK  238 (346)
T ss_dssp             EEESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETT
T ss_pred             EEeCCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECC
Confidence            1110                 000000011122                          223334455556678889988


Q ss_pred             CCEEEE-EeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEecCCCcceeEECCCCCeEEEEEcCCCCCC
Q 022716          201 EMLCVR-TFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQ  279 (293)
Q Consensus       201 ~~~~~~-~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~d~~~~~  279 (293)
                      .+.... ....+...+..+.++|++.+++.++. +.|.+||..+++.+..+.....+.+++|||||+++++++.|+.+.+
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~~~~~~~~~~va~s~DG~~l~v~~~d~~v~v  317 (346)
T d1jmxb_         239 TGKTHTQEFADLTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAV  317 (346)
T ss_dssp             TCCEEEEEEEECSSCEEEEEECSSCTTEEEEEE-SEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBSSEEEE
T ss_pred             CCceEEEEeecccceeEEEEEeCCCCEEEEecC-CeEEEEECCCCcEEEEEcCCCCEEEEEEcCCCCEEEEEeCCCcEEE
Confidence            765443 34567778899999999998887765 4699999999999888887778999999999999999998865544


Q ss_pred             CCc
Q 022716          280 ADE  282 (293)
Q Consensus       280 ~~~  282 (293)
                      ||-
T Consensus       318 ~D~  320 (346)
T d1jmxb_         318 FNP  320 (346)
T ss_dssp             EET
T ss_pred             EEC
Confidence            444

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.85  E-value=2.1e-19  Score=147.85  Aligned_cols=223  Identities=12%  Similarity=0.079  Sum_probs=160.2

Q ss_pred             ccccEEEEEECCCCCeE-EEEeCCCcEEEeecCCCCCCceeEEEeeCC-----cCCeeEEEEcCCCCCEEEEEe------
Q 022716           19 HKKKVHSVAWNCTGTKL-ASGSVDQTARVWHIEPHGHGKVKDIELRGH-----ADSVDQLCWDPKHADLIATAS------   86 (293)
Q Consensus        19 h~~~v~~l~~s~~~~~l-~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h-----~~~i~~~~~~~~~~~~l~s~~------   86 (293)
                      +...+.+++|+|||+++ ++++.|+.|.+||+....  ...  .+..+     ...+..++++|++ ..++.+.      
T Consensus        32 ~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~--~~~--~~~~~~~~~~~~~~~~v~~s~dg-~~l~~~~~~~~~~  106 (337)
T d1pbyb_          32 AGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGE--TLG--RIDLSTPEERVKSLFGAALSPDG-KTLAIYESPVRLE  106 (337)
T ss_dssp             CTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCC--EEE--EEECCBTTEEEECTTCEEECTTS-SEEEEEEEEEEEC
T ss_pred             CCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCc--EEE--EEecCCCcccccceeeEEEcCCC-cEEEEeecCCcce
Confidence            34568899999999987 567789999999997532  111  22222     2335578899875 4555554      


Q ss_pred             ------CCCeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceee-------
Q 022716           87 ------GDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVN-------  153 (293)
Q Consensus        87 ------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~-------  153 (293)
                            .+..+.+||..+++....+.....+..++++|+|+++++++.+  +.+||..+.........+....       
T Consensus       107 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~--~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  184 (337)
T d1pbyb_         107 LTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRD--LHVMDPEAGTLVEDKPIQSWEAETYAQPD  184 (337)
T ss_dssp             SSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESSS--EEEEETTTTEEEEEECSTTTTTTTBCCCB
T ss_pred             eeeccccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEcCC--cceeeeecCcEEEEeecCCccccceecCC
Confidence                  4678899999999888887777778889999999999998654  6678887665443332111000       


Q ss_pred             ------------------------------------eeEEecC-CCE--EEEecCCCCEEEEEECCCCCEEEEecCCCcE
Q 022716          154 ------------------------------------EIAWNMT-GEM--FFLTTGNAGCYCIAIDPMGRYFAVGSADSLV  194 (293)
Q Consensus       154 ------------------------------------~v~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i  194 (293)
                                                          ...|+.. +..  ............++++|++.+++++  ++.|
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i  262 (337)
T d1pbyb_         185 VLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVL  262 (337)
T ss_dssp             CCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEE
T ss_pred             cceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc--cccE
Confidence                                                0011111 111  1122233456678899999988766  4789


Q ss_pred             EEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEe
Q 022716          195 SLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP  251 (293)
Q Consensus       195 ~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~  251 (293)
                      ++||+++++.+..+ .+...+.+++|+|||++|++++.|+.|.+||..+++.+.+++
T Consensus       263 ~v~d~~~~~~~~~~-~~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~  318 (337)
T d1pbyb_         263 ESFDLEKNASIKRV-PLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVD  318 (337)
T ss_dssp             EEEETTTTEEEEEE-ECSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEE
T ss_pred             EEEECCCCcEEEEE-cCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEEE
Confidence            99999999988776 456678999999999999999999999999999999988775

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.84  E-value=7e-19  Score=150.93  Aligned_cols=178  Identities=14%  Similarity=0.056  Sum_probs=140.7

Q ss_pred             EEEEEeCCCeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeee--ecccceeeeeEEe
Q 022716           81 LIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR--RKFGYEVNEIAWN  158 (293)
Q Consensus        81 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~--~~~~~~~~~v~~~  158 (293)
                      ++++.+.|+.|.+||..+++++..+..+..+..++|+|||+++++++.|+.+.+||+.+.++...  ...+.....+.  
T Consensus        34 ~~v~~~d~g~v~v~D~~t~~v~~~~~~g~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~--  111 (432)
T d1qksa2          34 FSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIE--  111 (432)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEE--
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeE--
Confidence            35899999999999999999999988877788999999999999999999999999987654322  22222222222  


Q ss_pred             cCCCEEEEecCCCCEEEEEECCCCCEE-EEecCCCcEEEEeCCCCEEEEEeecc-----------CCCeeEEEEccCCCE
Q 022716          159 MTGEMFFLTTGNAGCYCIAIDPMGRYF-AVGSADSLVSLWDISEMLCVRTFTKL-----------EWPVRTISFSHTGDY  226 (293)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~gs~d~~i~iwd~~~~~~~~~~~~~-----------~~~v~~l~~sp~~~~  226 (293)
                                     .+.+|+|||++| ++++.++.|++||.++++.+..+..+           .....++.++|+|+.
T Consensus       112 ---------------~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~  176 (432)
T d1qksa2         112 ---------------TSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPE  176 (432)
T ss_dssp             ---------------ECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSE
T ss_pred             ---------------EecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCE
Confidence                           234678999975 77888999999999999887766543           345677899999987


Q ss_pred             E-EEecCCCcEEEEEcCCCCEE--EEEecCCCcceeEECCCCCeEEEEEcCC
Q 022716          227 I-ASASEDLFIDISNVHTGRTV--HQIPCRAAMNSVEWNPKYNLLAYAGDDK  275 (293)
Q Consensus       227 l-~s~s~d~~i~iw~~~~~~~~--~~~~~~~~i~~~~~sp~~~~la~~~~d~  275 (293)
                      + ++...++.|.+|+..+++..  ..++.......++|+|+|.++++++.++
T Consensus       177 ~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~  228 (432)
T d1qksa2         177 FIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANAR  228 (432)
T ss_dssp             EEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGG
T ss_pred             EEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEecccc
Confidence            5 66778899999999887754  4556666788999999999988888664

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=1.6e-17  Score=136.50  Aligned_cols=249  Identities=14%  Similarity=0.207  Sum_probs=163.5

Q ss_pred             eEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeee----eeeeecC
Q 022716           34 KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCS----QQAELSG  109 (293)
Q Consensus        34 ~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~----~~~~~~~  109 (293)
                      .+++++.|++|++|+++...  ....+....|...+..++|+|++..+++++..|+.|++|++......    .......
T Consensus         6 v~v~~~~~~~I~v~~~~~~~--~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~   83 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEG--ALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG   83 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTS--CEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS
T ss_pred             EEEECCCCCcEEEEEEcCCC--CeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCC
Confidence            35788899999999997542  33334445678889999999986545566666999999998765322    2233445


Q ss_pred             ceEEEEEcCCCCEEEEEeC-CCeEEEEEccccceeeee---cccceeeeeEEecCCCEEEEecC----------------
Q 022716          110 ENINITYKPDGTHIAVGNR-DDELTILDVRKFKPIHRR---KFGYEVNEIAWNMTGEMFFLTTG----------------  169 (293)
Q Consensus       110 ~~~~~~~~~~~~~l~~~~~-d~~i~l~d~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~----------------  169 (293)
                      .+..++++|||++|++++. ++.+.+|+..........   .....+..+.+++.+........                
T Consensus        84 ~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~  163 (333)
T d1ri6a_          84 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHL  163 (333)
T ss_dssp             CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCE
T ss_pred             CceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcc
Confidence            5678999999999999885 678888887655433222   12233455666666554332221                


Q ss_pred             ------------CCCEEEEEECCCCCEEEEe-cCCCcEEEEeCCC----CEEEEEeec------cCCCeeEEEEccCCCE
Q 022716          170 ------------NAGCYCIAIDPMGRYFAVG-SADSLVSLWDISE----MLCVRTFTK------LEWPVRTISFSHTGDY  226 (293)
Q Consensus       170 ------------~~~~~~~~~~~~~~~l~~g-s~d~~i~iwd~~~----~~~~~~~~~------~~~~v~~l~~sp~~~~  226 (293)
                                  ......+++++++.++... ...+...+++...    .........      .......++++|++++
T Consensus       164 ~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~  243 (333)
T d1ri6a_         164 VAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRH  243 (333)
T ss_dssp             EEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSE
T ss_pred             eeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCc
Confidence                        1234578899998876554 4566777887542    122222211      2235677899999987


Q ss_pred             EEE-ecCCCcEEEEEcCCCCEE----EEEecCCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeee
Q 022716          227 IAS-ASEDLFIDISNVHTGRTV----HQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE  291 (293)
Q Consensus       227 l~s-~s~d~~i~iw~~~~~~~~----~~~~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~  291 (293)
                      ++. +..++.+.+|++......    ........++.++|+|+|++|++++.+.       +.++||.++
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~-------~~v~v~~id  306 (333)
T d1ri6a_         244 LYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKS-------HHISVYEIV  306 (333)
T ss_dssp             EEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTT-------CEEEEEEEE
T ss_pred             eeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCC-------CeEEEEEEE
Confidence            654 557788999988754322    2223445678999999999988887543       456666554

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.82  E-value=1.3e-17  Score=142.74  Aligned_cols=237  Identities=13%  Similarity=0.042  Sum_probs=155.2

Q ss_pred             ECCCCC--eEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeee
Q 022716           28 WNCTGT--KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQA  105 (293)
Q Consensus        28 ~s~~~~--~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~  105 (293)
                      ++.|.+  ++++++.||+|++||+.+..  ..  ..+..|. .+..++|+|++ +++++++.|+.+++||+.+++.....
T Consensus        26 ~~~d~~~~~~V~~~~dg~v~vwD~~t~~--~~--~~l~~g~-~~~~vafSPDG-k~l~~~~~d~~v~vwd~~t~~~~~~~   99 (426)
T d1hzua2          26 NDLDLPNLFSVTLRDAGQIALVDGDSKK--IV--KVIDTGY-AVHISRMSASG-RYLLVIGRDARIDMIDLWAKEPTKVA   99 (426)
T ss_dssp             SCCCGGGEEEEEETTTTEEEEEETTTCS--EE--EEEECCS-SEEEEEECTTS-CEEEEEETTSEEEEEETTSSSCEEEE
T ss_pred             ccCCCCeEEEEEEcCCCEEEEEECCCCc--EE--EEEeCCC-CeeEEEECCCC-CEEEEEeCCCCEEEEEccCCceeEEE
Confidence            444433  56889999999999997532  22  2455554 58899999975 68889999999999999988754433


Q ss_pred             e--ecCce----EEEEEcCCCCEEEEE-eCCCeEEEEEccccceeeeecc------------cceeeeeEEecCCCEEEE
Q 022716          106 E--LSGEN----INITYKPDGTHIAVG-NRDDELTILDVRKFKPIHRRKF------------GYEVNEIAWNMTGEMFFL  166 (293)
Q Consensus       106 ~--~~~~~----~~~~~~~~~~~l~~~-~~d~~i~l~d~~~~~~~~~~~~------------~~~~~~v~~~~~~~~~~~  166 (293)
                      +  ....+    .+++|+|||++++++ ..++.+.+||.....+......            +.....+..++.+..+..
T Consensus       100 ~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~  179 (426)
T d1hzua2         100 EIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIV  179 (426)
T ss_dssp             EEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEE
T ss_pred             EEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEE
Confidence            2  22222    345567899987555 4789999999988765543321            111223333333332222


Q ss_pred             e-----------------------cCCCCEEEEEECCCCCEEEEec-CCCcEEEEeCCCCEEEEEeeccC--CCeeEEEE
Q 022716          167 T-----------------------TGNAGCYCIAIDPMGRYFAVGS-ADSLVSLWDISEMLCVRTFTKLE--WPVRTISF  220 (293)
Q Consensus       167 ~-----------------------~~~~~~~~~~~~~~~~~l~~gs-~d~~i~iwd~~~~~~~~~~~~~~--~~v~~l~~  220 (293)
                      .                       .....+..++++|+++++.++. .++.+.+++..++..+.......  .+...+.+
T Consensus       180 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (426)
T d1hzua2         180 NVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF  259 (426)
T ss_dssp             EETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEE
T ss_pred             ecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeee
Confidence            1                       1223456789999999876665 56679999999998776654322  23334444


Q ss_pred             ccCCC---EEEEecCCCcEEEEEcCCC-------CEEEEEec-CCCcceeEECCCCCeEEE
Q 022716          221 SHTGD---YIASASEDLFIDISNVHTG-------RTVHQIPC-RAAMNSVEWNPKYNLLAY  270 (293)
Q Consensus       221 sp~~~---~l~s~s~d~~i~iw~~~~~-------~~~~~~~~-~~~i~~~~~sp~~~~la~  270 (293)
                      .+.+.   ..++.+.|+.+.+|+....       +....+.. ...+..++|||++.+|++
T Consensus       260 ~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v  320 (426)
T d1hzua2         260 VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYV  320 (426)
T ss_dssp             EETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEE
T ss_pred             ecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEE
Confidence            43332   2234556888888876543       55566654 456899999999999995

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=3.7e-16  Score=128.15  Aligned_cols=244  Identities=14%  Similarity=0.111  Sum_probs=155.9

Q ss_pred             ecCccccEEEEEECCCCCeEE-EEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEe-CCCeEEE
Q 022716           16 YTGHKKKVHSVAWNCTGTKLA-SGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATAS-GDKTVRL   93 (293)
Q Consensus        16 ~~~h~~~v~~l~~s~~~~~l~-s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~-~d~~i~v   93 (293)
                      ...|.+.+..|+|||||++|+ ++..|+.|++|+++...... .......+...+..++|+|++. .|++++ .++.+.+
T Consensus        32 ~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~-~~~~~~~~~~~p~~l~~spDg~-~l~v~~~~~~~v~~  109 (333)
T d1ri6a_          32 VVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGAL-TFAAESALPGSLTHISTDHQGQ-FVFVGSYNAGNVSV  109 (333)
T ss_dssp             EEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCE-EEEEEEECSSCCSEEEECTTSS-EEEEEETTTTEEEE
T ss_pred             EEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcE-EEeeecccCCCceEEEEcCCCC-EEeecccCCCceee
Confidence            347889999999999999985 45558999999997543222 2222223344567899999864 555555 5788999


Q ss_pred             EeCCCCeeeeeee---ecCceEEEEEcCCCCEEEEEeC-CCeEEEEEccccceeee-------ecccceeeeeEEecCCC
Q 022716           94 WDARSGKCSQQAE---LSGENINITYKPDGTHIAVGNR-DDELTILDVRKFKPIHR-------RKFGYEVNEIAWNMTGE  162 (293)
Q Consensus        94 wd~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~-d~~i~l~d~~~~~~~~~-------~~~~~~~~~v~~~~~~~  162 (293)
                      |+...........   ....+.++.++|++++++++.. +..+.+|+.........       ...+.....+.+++.+.
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~  189 (333)
T d1ri6a_         110 TRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQ  189 (333)
T ss_dssp             EEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSS
T ss_pred             eccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccce
Confidence            9887665433322   3345667899999999888875 56788898765432211       11233445666766665


Q ss_pred             EEEEecCC--------------------------------CCEEEEEECCCCCEEE-EecCCCcEEEEeCCCCE---EEE
Q 022716          163 MFFLTTGN--------------------------------AGCYCIAIDPMGRYFA-VGSADSLVSLWDISEML---CVR  206 (293)
Q Consensus       163 ~~~~~~~~--------------------------------~~~~~~~~~~~~~~l~-~gs~d~~i~iwd~~~~~---~~~  206 (293)
                      ........                                .....++++++++++. ++..++.+.+|++....   .+.
T Consensus       190 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (333)
T d1ri6a_         190 YAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKE  269 (333)
T ss_dssp             EEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEE
T ss_pred             eEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEE
Confidence            44432211                                1234577899998654 45667889999876432   222


Q ss_pred             EeeccCCCeeEEEEccCCCEEEEe-cCCCcEEEEE--cCCCCE--EEEEecCCCcceeEE
Q 022716          207 TFTKLEWPVRTISFSHTGDYIASA-SEDLFIDISN--VHTGRT--VHQIPCRAAMNSVEW  261 (293)
Q Consensus       207 ~~~~~~~~v~~l~~sp~~~~l~s~-s~d~~i~iw~--~~~~~~--~~~~~~~~~i~~~~~  261 (293)
                      ........+..++|+|||++|+++ +.++.|.+|+  .++|+.  +..++....-.+|.+
T Consensus       270 ~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~l~~~~~~~~g~~p~~v~~  329 (333)
T d1ri6a_         270 GFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVGQGPMWVVV  329 (333)
T ss_dssp             EEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEECSSSCCEEEE
T ss_pred             EEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECCCCcEEEEEeccCCCCCcEEEE
Confidence            233344567889999999987665 4668899984  556653  334444333334433

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.74  E-value=8.1e-17  Score=133.53  Aligned_cols=253  Identities=12%  Similarity=0.041  Sum_probs=167.9

Q ss_pred             EEEEECCCCCeEEEE-----eCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEE---------eCCC
Q 022716           24 HSVAWNCTGTKLASG-----SVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATA---------SGDK   89 (293)
Q Consensus        24 ~~l~~s~~~~~l~s~-----~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~---------~~d~   89 (293)
                      .-.+.+|||++++..     ..+++|.+||....   ... ..+..+.  ...++|+|++..++++.         ..|+
T Consensus         5 ~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg---~~~-~~~~~g~--~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~   78 (355)
T d2bbkh_           5 ILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAG---RVI-GMIDGGF--LPNPVVADDGSFIAHASTVFSRIARGERTD   78 (355)
T ss_dssp             BCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTT---EEE-EEEEECS--SCEEEECTTSSCEEEEEEEEEETTEEEEEE
T ss_pred             EeEeeCCCCCEEEEEecccCCCcCeEEEEECCCC---cEE-EEEECCC--CCceEEcCCCCEEEEEeCCCccccccCCCC
Confidence            334568999998765     34567999998753   221 2333333  34689999876554432         3478


Q ss_pred             eEEEEeCCCCeeeeeeeecC--------ceEEEEEcCCCCEEEEEe--CCCeEEEEEccccceeeeecccc--------e
Q 022716           90 TVRLWDARSGKCSQQAELSG--------ENINITYKPDGTHIAVGN--RDDELTILDVRKFKPIHRRKFGY--------E  151 (293)
Q Consensus        90 ~i~vwd~~~~~~~~~~~~~~--------~~~~~~~~~~~~~l~~~~--~d~~i~l~d~~~~~~~~~~~~~~--------~  151 (293)
                      .|++||..+++.........        .+..++|+|+++.+++..  .+..+.+||..+.........+.        .
T Consensus        79 ~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (355)
T d2bbkh_          79 YVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAP  158 (355)
T ss_dssp             EEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEET
T ss_pred             EEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCC
Confidence            99999999998776554322        234588999999988775  45788999998877665543321        1


Q ss_pred             eeeeEEecCCCEEEEecCCC-----------------CEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEE--EEeecc-
Q 022716          152 VNEIAWNMTGEMFFLTTGNA-----------------GCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCV--RTFTKL-  211 (293)
Q Consensus       152 ~~~v~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~--~~~~~~-  211 (293)
                      ...+.+.+++..+.+.....                 .+...++.+++..++.++.++.+++|+...+...  .....+ 
T Consensus       159 ~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  238 (355)
T d2bbkh_         159 DTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALT  238 (355)
T ss_dssp             TEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSC
T ss_pred             cceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcc
Confidence            22345566665554433221                 1223456678888899999999999998766432  111111 


Q ss_pred             ---------CCCeeEEEEccCCCEEEEecCC----------CcEEEEEcCCCCEEEEEecCCCcceeEECCCCCe--EEE
Q 022716          212 ---------EWPVRTISFSHTGDYIASASED----------LFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNL--LAY  270 (293)
Q Consensus       212 ---------~~~v~~l~~sp~~~~l~s~s~d----------~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~--la~  270 (293)
                               ......++++|++..++..+.+          ..|.+||..+++.+..+.....+.+++|+|+|+.  +++
T Consensus       239 ~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~v~  318 (355)
T d2bbkh_         239 EAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYAL  318 (355)
T ss_dssp             HHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEE
T ss_pred             cceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCCCCEEEEEEcCCCCeEEEEE
Confidence                     1233558899999887665433          4689999999999888877777899999999973  455


Q ss_pred             EEcCCCCCCCCc
Q 022716          271 AGDDKNKYQADE  282 (293)
Q Consensus       271 ~~~d~~~~~~~~  282 (293)
                      ++.|+.+++||-
T Consensus       319 ~~~d~~i~v~D~  330 (355)
T d2bbkh_         319 STGDKTLYIHDA  330 (355)
T ss_dssp             ETTTTEEEEEET
T ss_pred             ECCCCEEEEEEC
Confidence            555665555543

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.72  E-value=1.7e-14  Score=120.28  Aligned_cols=257  Identities=12%  Similarity=0.002  Sum_probs=161.5

Q ss_pred             cCccccEEEEEECCCCCeEEEE-----eCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEe-----
Q 022716           17 TGHKKKVHSVAWNCTGTKLASG-----SVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATAS-----   86 (293)
Q Consensus        17 ~~h~~~v~~l~~s~~~~~l~s~-----~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~-----   86 (293)
                      .++..++.+++++|||++++..     +.++.|.+||.+..   +.. ..+..+..+  .+.|+|++. .|+.++     
T Consensus        17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg---~~~-~~~~~~~~~--~~a~SpDG~-~l~va~~~~~~   89 (373)
T d2madh_          17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSG---SIL-GHVNGGFLP--NPVAAHSGS-EFALASTSFSR   89 (373)
T ss_pred             ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCC---CEE-EEEeCCCCc--cEEEcCCCC-EEEEEeecCCc
Confidence            3678899999999999998654     23456888887643   222 234455433  688999864 555543     


Q ss_pred             -----CCCeEEEEeCCCCeeeeeeeecCc--------eEEEEEcCCCCEEEEEe--CCCeEEEEEccccceeeeecccce
Q 022716           87 -----GDKTVRLWDARSGKCSQQAELSGE--------NINITYKPDGTHIAVGN--RDDELTILDVRKFKPIHRRKFGYE  151 (293)
Q Consensus        87 -----~d~~i~vwd~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~~~~--~d~~i~l~d~~~~~~~~~~~~~~~  151 (293)
                           .++.|.+||..+++.......+..        ...+.|+++++.+++..  .++.+.+|+....+......   .
T Consensus        90 ~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~---~  166 (373)
T d2madh_          90 IAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLS---S  166 (373)
T ss_pred             ccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEec---c
Confidence                 467899999999987665543322        24578999999776654  45678889887655443322   1


Q ss_pred             eeeeEEecCCCEEEEecC-CCC---------------------------EEEEEECCCCCEEEEecCCCcEEEEeCCCCE
Q 022716          152 VNEIAWNMTGEMFFLTTG-NAG---------------------------CYCIAIDPMGRYFAVGSADSLVSLWDISEML  203 (293)
Q Consensus       152 ~~~v~~~~~~~~~~~~~~-~~~---------------------------~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~  203 (293)
                      ...+.+++.+...++... +..                           ...+.+++++. ++..+.++.+.+|+.....
T Consensus       167 ~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~  245 (373)
T d2madh_         167 PTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGR-IVWPVYSGKILQADISAAG  245 (373)
T ss_pred             ceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCce-EEEecCCceEEEEEcCCCe
Confidence            233444454443332211 110                           11233444444 4556678889999987654


Q ss_pred             EEE--Eeecc----------CCCeeEEEEccCCCEE----------EEecCCCcEEEEEcCCCCEEEEEecCCCcceeEE
Q 022716          204 CVR--TFTKL----------EWPVRTISFSHTGDYI----------ASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEW  261 (293)
Q Consensus       204 ~~~--~~~~~----------~~~v~~l~~sp~~~~l----------~s~s~d~~i~iw~~~~~~~~~~~~~~~~i~~~~~  261 (293)
                      ...  .....          ......++++|++..+          ++...++.+.+||..+++.+..+.....+..++|
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~a~  325 (373)
T d2madh_         246 ATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISV  325 (373)
T ss_pred             EEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEecCCCCeeEEEE
Confidence            321  11111          1223445666666554          3455667889999999999998888888999999


Q ss_pred             CCCCCe--EEEEEcCCCCCCCCcce
Q 022716          262 NPKYNL--LAYAGDDKNKYQADEGV  284 (293)
Q Consensus       262 sp~~~~--la~~~~d~~~~~~~~~~  284 (293)
                      +|||+.  +++++.|+.+++||-.+
T Consensus       326 spDG~~~l~vt~~~d~~v~v~D~~t  350 (373)
T d2madh_         326 AQDGGPDLYALSAGTEVLHIYDAGA  350 (373)
T ss_pred             CCCCCEEEEEEeCCCCeEEEEECCC
Confidence            999984  46677776555555433

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.71  E-value=3.8e-14  Score=118.05  Aligned_cols=244  Identities=10%  Similarity=-0.016  Sum_probs=152.1

Q ss_pred             eecCccccEEEEEECCCCCeEEEEe----------CCCcEEEeecCCCCCCce-----------------eE--------
Q 022716           15 EYTGHKKKVHSVAWNCTGTKLASGS----------VDQTARVWHIEPHGHGKV-----------------KD--------   59 (293)
Q Consensus        15 ~~~~h~~~v~~l~~s~~~~~l~s~~----------~dg~v~iw~~~~~~~~~~-----------------~~--------   59 (293)
                      .+.++..+  .++|+|||++|++++          .++.|++||.........                 ..        
T Consensus        62 ~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~  139 (373)
T d2madh_          62 HVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADL  139 (373)
T ss_pred             EEeCCCCc--cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcE
Confidence            34444433  799999999998875          467899999874321000                 00        


Q ss_pred             --EE----------------eeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeeeecC-----c--eEEE
Q 022716           60 --IE----------------LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSG-----E--NINI  114 (293)
Q Consensus        60 --~~----------------~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~-----~--~~~~  114 (293)
                        ..                ...+......+.++|++...+++.+.|+.+.+|+...+..........     .  ....
T Consensus       140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (373)
T d2madh_         140 LFFQFAAGPAVGLVVQGGSSDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPA  219 (373)
T ss_pred             EEEEEcCCCceEEeeccCCeEEEEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeE
Confidence              00                011222334566778777778889999999999998876654432211     1  1234


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEEccccceeeeeccc---ceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCC
Q 022716          115 TYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFG---YEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSAD  191 (293)
Q Consensus       115 ~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d  191 (293)
                      .+.+++. ++..+.++.+.+|+.............   .......|.+.............. .....+.+..+++...+
T Consensus       220 ~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~~~~~~~~  297 (373)
T d2madh_         220 QANKSGR-IVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDG-IYLLTSEQSAWKLHAAA  297 (373)
T ss_pred             EECCCce-EEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCe-EEEecCCCceEEeecCC
Confidence            4555554 455567888999988765533222211   111222233322222211111111 22234455667778888


Q ss_pred             CcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCE--EEEecCCCcEEEEEcCCCCEEEEEe-cCCCcceeEECC
Q 022716          192 SLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDY--IASASEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNP  263 (293)
Q Consensus       192 ~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~--l~s~s~d~~i~iw~~~~~~~~~~~~-~~~~i~~~~~sp  263 (293)
                      +.+.+||..+++.+..+ .+...+..++|+|||+.  +++++.|+.|++||..+++.++.+. .......|+.-+
T Consensus       298 ~~v~~~d~~t~~~~~~~-~~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~  371 (373)
T d2madh_         298 KEVTSVTGLVGQTSSQI-SLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMN  371 (373)
T ss_pred             CeEEEEECCCCcEEEEe-cCCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEec
Confidence            99999999999888766 45667899999999984  4788999999999999999999886 344556666544

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.64  E-value=2.3e-13  Score=112.29  Aligned_cols=237  Identities=12%  Similarity=0.080  Sum_probs=142.8

Q ss_pred             EEEEECCCCCeEEEE----------eCCCcEEEeecCCCCCCceeEEEee-CC----cCCeeEEEEcCCCCCEEEEE--e
Q 022716           24 HSVAWNCTGTKLASG----------SVDQTARVWHIEPHGHGKVKDIELR-GH----ADSVDQLCWDPKHADLIATA--S   86 (293)
Q Consensus        24 ~~l~~s~~~~~l~s~----------~~dg~v~iw~~~~~~~~~~~~~~~~-~h----~~~i~~~~~~~~~~~~l~s~--~   86 (293)
                      ..++|||||++|+.+          +.|+.|++||.....  ....+... .+    ......+.|+|++. .++.+  +
T Consensus        50 ~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~--~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~~~v~~~~  126 (355)
T d2bbkh_          50 PNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLL--PTADIELPDAPRFLVGTYPWMTSLTPDGK-TLLFYQFS  126 (355)
T ss_dssp             CEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC--EEEEEEETTCCCCCBSCCGGGEEECTTSS-EEEEEECS
T ss_pred             CceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCC--EEEEEecCCcceeecCCCCceEEEecCCC-eeEEecCC
Confidence            368999999988764          348899999987532  11222111 11    12234578898764 44444  4


Q ss_pred             CCCeEEEEeCCCCeeeeeeeecCc--------eEEEEEcCCCCEEEEEeC-CCeEEEEEccccceeeeecc-----ccee
Q 022716           87 GDKTVRLWDARSGKCSQQAELSGE--------NINITYKPDGTHIAVGNR-DDELTILDVRKFKPIHRRKF-----GYEV  152 (293)
Q Consensus        87 ~d~~i~vwd~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~~~~~-d~~i~l~d~~~~~~~~~~~~-----~~~~  152 (293)
                      .+..+.+|+..+++....+.....        ...+.++++++.++.... ++.+.+.+............     ...-
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (355)
T d2bbkh_         127 PAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKA  206 (355)
T ss_dssp             SSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTT
T ss_pred             CCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCC
Confidence            467899999999887665544332        224567777777665543 44555655543322211110     0011


Q ss_pred             eeeEEecCCCEEEEec-CCC-----------------------CEEEEEECCCCCEEEEecCC----------CcEEEEe
Q 022716          153 NEIAWNMTGEMFFLTT-GNA-----------------------GCYCIAIDPMGRYFAVGSAD----------SLVSLWD  198 (293)
Q Consensus       153 ~~v~~~~~~~~~~~~~-~~~-----------------------~~~~~~~~~~~~~l~~gs~d----------~~i~iwd  198 (293)
                      ..+.|...+..+.+.. ...                       ....+++++++..++....+          +.|.+||
T Consensus       207 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d  286 (355)
T d2bbkh_         207 GRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLD  286 (355)
T ss_dssp             TEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEE
T ss_pred             CeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEe
Confidence            1122222222211111 110                       11246788888877665433          4699999


Q ss_pred             CCCCEEEEEeeccCCCeeEEEEccCCC--EEEEecCCCcEEEEEcCCCCEEEEEecCCC-cceeEECCC
Q 022716          199 ISEMLCVRTFTKLEWPVRTISFSHTGD--YIASASEDLFIDISNVHTGRTVHQIPCRAA-MNSVEWNPK  264 (293)
Q Consensus       199 ~~~~~~~~~~~~~~~~v~~l~~sp~~~--~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~-i~~~~~sp~  264 (293)
                      ..+++.+..+.. ...+.+++|+|||+  ++++++.|+.|.+||.++++.++.+...+. -..|.+.++
T Consensus       287 ~~t~~~~~~~~~-~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~p~~i~~~d~  354 (355)
T d2bbkh_         287 AKTGERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADM  354 (355)
T ss_dssp             TTTCCEEEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEECCCC
T ss_pred             CCCCcEEEEecC-CCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCcCCCccEEEeCCC
Confidence            999988777653 34688999999998  457788899999999999999988864333 334444443

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.58  E-value=2.4e-14  Score=117.43  Aligned_cols=182  Identities=13%  Similarity=0.125  Sum_probs=128.3

Q ss_pred             EEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeeee--cCceEEEEEcCCCCEEEE-EeCCCeEEEEEccccceeeeeccc
Q 022716           73 CWDPKHADLIATASGDKTVRLWDARSGKCSQQAEL--SGENINITYKPDGTHIAV-GNRDDELTILDVRKFKPIHRRKFG  149 (293)
Q Consensus        73 ~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~-~~~d~~i~l~d~~~~~~~~~~~~~  149 (293)
                      ++++. +++|++++.|+.|.+||+.+++.+..+..  ...+..++|+|||+++++ +..++.|.+||+.+.+........
T Consensus         3 a~~~~-~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~   81 (346)
T d1jmxb_           3 ALKAG-HEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS   81 (346)
T ss_dssp             CCCTT-CEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred             cCCCC-CcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccc
Confidence            45554 57999999999999999999998887765  345679999999998754 557899999999988766554332


Q ss_pred             ceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEec------------CCCcEEEEeCCCCEEEEEeec--cCCCe
Q 022716          150 YEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGS------------ADSLVSLWDISEMLCVRTFTK--LEWPV  215 (293)
Q Consensus       150 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs------------~d~~i~iwd~~~~~~~~~~~~--~~~~v  215 (293)
                      ........              .+..++++|+|+++.+++            .++.+.+||..++.....+..  ....+
T Consensus        82 ~~~~~~~~--------------~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  147 (346)
T d1jmxb_          82 SVPGEVGR--------------SMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQV  147 (346)
T ss_dssp             CSTTEEEE--------------CSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSC
T ss_pred             ccccccCC--------------ceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCce
Confidence            21111111              122467788888776654            467788888776543332222  22346


Q ss_pred             eEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEecCCCcceeEECCCCCeEEEEE
Q 022716          216 RTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAG  272 (293)
Q Consensus       216 ~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~  272 (293)
                      ..+.+++++..++++   ..+.+|+..+++.+..+........+.++|++..+..++
T Consensus       148 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (346)
T d1jmxb_         148 YLMRAADDGSLYVAG---PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQ  201 (346)
T ss_dssp             CCEEECTTSCEEEES---SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCC
T ss_pred             EEEEecCCCEEEEeC---CcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEe
Confidence            667777888776654   458899999999988888777788888999887654443

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.55  E-value=4.1e-13  Score=111.94  Aligned_cols=232  Identities=13%  Similarity=0.011  Sum_probs=136.0

Q ss_pred             EEEECCCCCeEEEEe----------CCCcEEEeecCCCCCCceeEEEeeCCc-----CCeeEEEEcCCCCCEEEEEeCCC
Q 022716           25 SVAWNCTGTKLASGS----------VDQTARVWHIEPHGHGKVKDIELRGHA-----DSVDQLCWDPKHADLIATASGDK   89 (293)
Q Consensus        25 ~l~~s~~~~~l~s~~----------~dg~v~iw~~~~~~~~~~~~~~~~~h~-----~~i~~~~~~~~~~~~l~s~~~d~   89 (293)
                      .++|+|||+.|++++          .|+.|++||.....  ....+.++.+.     .....+.|+|++..++++...++
T Consensus        69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~--~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~  146 (368)
T d1mdah_          69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFL--PIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSS  146 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCC--EEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSS
T ss_pred             cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCc--EeeeecCCccceecccCCccceEECCCCCEEEEEeCCCC
Confidence            588999999998754          47889999987532  22222222111     11235789998766665555689


Q ss_pred             eEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeee-------cccceeeeeEEecCC-
Q 022716           90 TVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRR-------KFGYEVNEIAWNMTG-  161 (293)
Q Consensus        90 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~-------~~~~~~~~v~~~~~~-  161 (293)
                      .+.+||+.+++.............  +......++..+.|+++.++++.........       ..........+.+.+ 
T Consensus       147 ~v~~~d~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  224 (368)
T d1mdah_         147 AAAGLSVPGASDDQLTKSASCFHI--HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGM  224 (368)
T ss_dssp             CEEEEEETTTEEEEEEECSSCCCC--EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTE
T ss_pred             eEEEEECCCCcEeEEeeccCcceE--ccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcE
Confidence            999999999887776554432211  1111233444455555555554322211000       000001111111111 


Q ss_pred             -------CEEEEecCC-----------------------CCEEEEEECCCCCEEEEecCC---------CcEEEEeCCCC
Q 022716          162 -------EMFFLTTGN-----------------------AGCYCIAIDPMGRYFAVGSAD---------SLVSLWDISEM  202 (293)
Q Consensus       162 -------~~~~~~~~~-----------------------~~~~~~~~~~~~~~l~~gs~d---------~~i~iwd~~~~  202 (293)
                             .........                       .....++++|++..+.+...+         ..|.+||..++
T Consensus       225 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~  304 (368)
T d1mdah_         225 LVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVG  304 (368)
T ss_dssp             EEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSC
T ss_pred             EEEecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCC
Confidence                   111111000                       011246778887766554322         35899999999


Q ss_pred             EEEEEeeccCCCeeEEEEccCCCE--EEEecCCCcEEEEEcCCCCEEEEEecCCCcceeEE
Q 022716          203 LCVRTFTKLEWPVRTISFSHTGDY--IASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEW  261 (293)
Q Consensus       203 ~~~~~~~~~~~~v~~l~~sp~~~~--l~s~s~d~~i~iw~~~~~~~~~~~~~~~~i~~~~~  261 (293)
                      +.+..+. +...+.+++|+|||+.  +++++.|+.|++||..+++.+..++....-+.|+.
T Consensus       305 ~~~~~~~-~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g~~P~~l~~  364 (368)
T d1mdah_         305 QTSGPIS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGPESLSV  364 (368)
T ss_dssp             CEEECCE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCCCEEEC
T ss_pred             cEeEEec-CCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEECCCCCCEEEE
Confidence            8877664 3457889999999973  46778899999999999999988875544445543

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.49  E-value=5.3e-12  Score=108.52  Aligned_cols=109  Identities=9%  Similarity=0.128  Sum_probs=79.1

Q ss_pred             eecCccccEEEEEECCCCCeEEEEeC---------CCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEE
Q 022716           15 EYTGHKKKVHSVAWNCTGTKLASGSV---------DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATA   85 (293)
Q Consensus        15 ~~~~h~~~v~~l~~s~~~~~l~s~~~---------dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~   85 (293)
                      .+.+|...|.+++|||||++|+.++.         ++.+.+||+...   .  ...+..|...+..+.|+|++. .++. 
T Consensus        56 ~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~---~--~~~l~~~~~~~~~~~~SPDG~-~ia~-  128 (470)
T d2bgra1          56 TFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKR---Q--LITEERIPNNTQWVTWSPVGH-KLAY-  128 (470)
T ss_dssp             TTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTT---E--ECCSSCCCTTEEEEEECSSTT-CEEE-
T ss_pred             hhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCC---c--ccccccCCccccccccccCcc-eeeE-
Confidence            45567788999999999999998753         577889999753   1  224667888899999999865 4444 


Q ss_pred             eCCCeEEEEeCCCCeeeeeeeec-------------------CceEEEEEcCCCCEEEEEeCCC
Q 022716           86 SGDKTVRLWDARSGKCSQQAELS-------------------GENINITYKPDGTHIAVGNRDD  130 (293)
Q Consensus        86 ~~d~~i~vwd~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~l~~~~~d~  130 (293)
                      ..+..+.+|+..+++........                   +....+.|+|||++++....|.
T Consensus       129 ~~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~  192 (470)
T d2bgra1         129 VWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFND  192 (470)
T ss_dssp             EETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEEC
T ss_pred             eecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecC
Confidence            35678999999887654432111                   1123477999999999876543

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.48  E-value=4.6e-12  Score=106.58  Aligned_cols=258  Identities=12%  Similarity=0.021  Sum_probs=158.5

Q ss_pred             ccccEEEEEECCCCCeEEE-EeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeE------
Q 022716           19 HKKKVHSVAWNCTGTKLAS-GSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV------   91 (293)
Q Consensus        19 h~~~v~~l~~s~~~~~l~s-~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i------   91 (293)
                      |...+....++|||++|.. ...++.|.++|++...   ...+....+...+..++++|++...++.+..+..+      
T Consensus        70 hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k---~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg  146 (441)
T d1qnia2          70 HHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMK---TDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDG  146 (441)
T ss_dssp             CCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTE---EEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSS
T ss_pred             cCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCc---EeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcc
Confidence            5556677777899999854 4568999999997542   12221223456688899998765544444433333      


Q ss_pred             ------------EEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCC-eEEEEEccccceeeeec-----------
Q 022716           92 ------------RLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDD-ELTILDVRKFKPIHRRK-----------  147 (293)
Q Consensus        92 ------------~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~-~i~l~d~~~~~~~~~~~-----------  147 (293)
                                  ..+|..+.+........+.+..++++|+|+++++.+.+. .+..++..+........           
T Consensus       147 ~~~~~~~~~~~~~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~  226 (441)
T d1qnia2         147 TDFSLDNSYTMFTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAV  226 (441)
T ss_dssp             SCCCGGGEEEEEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHH
T ss_pred             cccccccccceEEeecCccceeeEEEecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEe
Confidence                        447777777666667777788899999999998887543 22222222211111000           


Q ss_pred             --------ccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEE-EEecCCCcEEEEeCCCCEE-----------EEE
Q 022716          148 --------FGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYF-AVGSADSLVSLWDISEMLC-----------VRT  207 (293)
Q Consensus       148 --------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~gs~d~~i~iwd~~~~~~-----------~~~  207 (293)
                              .+..+..+...................-++++|+|+++ +++..+++|.+||+++...           +..
T Consensus       227 ~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~  306 (441)
T d1qnia2         227 KAGNFKTIGDSKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVA  306 (441)
T ss_dssp             HTTCCBCCTTCCCCEEECSSSCSSEEEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEE
T ss_pred             cCCCEEEeCCCCcEEEEcccCCceEEEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEe
Confidence                    00111111111111222222222234568999999976 5678899999999865321           111


Q ss_pred             eeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCC---------CC-EEEEE------ecCCCcceeEECCCCCeEEEE
Q 022716          208 FTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHT---------GR-TVHQI------PCRAAMNSVEWNPKYNLLAYA  271 (293)
Q Consensus       208 ~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~---------~~-~~~~~------~~~~~i~~~~~sp~~~~la~~  271 (293)
                      .....-.....+|.++|....+...|..|..|++..         .. .+..+      .|...+.+..++|+|++|+++
T Consensus       307 ~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~  386 (441)
T d1qnia2         307 EPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVL  386 (441)
T ss_dssp             CCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEE
T ss_pred             ecccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEec
Confidence            111222356678999999999999999999999741         12 23332      344457788999999999999


Q ss_pred             ---EcCCCCCC
Q 022716          272 ---GDDKNKYQ  279 (293)
Q Consensus       272 ---~~d~~~~~  279 (293)
                         +.|+.+-.
T Consensus       387 ~k~s~dr~~~~  397 (441)
T d1qnia2         387 SKFSKDRFLPV  397 (441)
T ss_dssp             ESCCGGGSCCC
T ss_pred             CccccccCcCC
Confidence               56665544

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.48  E-value=4.2e-13  Score=111.84  Aligned_cols=257  Identities=10%  Similarity=-0.075  Sum_probs=151.9

Q ss_pred             ccccEEEEEECCCCCeE---EEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEE---------e
Q 022716           19 HKKKVHSVAWNCTGTKL---ASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATA---------S   86 (293)
Q Consensus        19 h~~~v~~l~~s~~~~~l---~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~---------~   86 (293)
                      +.++...++..++++..   +++..+|..++|-++... ..... ...++...  .+.|+|++..+.++.         +
T Consensus        18 ~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~-~~~~~-~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~   93 (368)
T d1mdah_          18 SDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGC-GVTLG-HSLGAFLS--LAVAGHSGSDFALASTSFARSAKGK   93 (368)
T ss_dssp             CCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTT-TEEEE-EEEECTTC--EEEECTTSSCEEEEEEEETTTTSSS
T ss_pred             cCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCC-CcEEE-EEeCCCCC--cceECCCCCEEEEEcccCccccccc
Confidence            34444555667888753   334566776666443221 22222 23333333  578899865444332         3


Q ss_pred             CCCeEEEEeCCCCeeeeeeeecC--------ceEEEEEcCCCCEEEEEe-CCCeEEEEEccccceeeeecccce------
Q 022716           87 GDKTVRLWDARSGKCSQQAELSG--------ENINITYKPDGTHIAVGN-RDDELTILDVRKFKPIHRRKFGYE------  151 (293)
Q Consensus        87 ~d~~i~vwd~~~~~~~~~~~~~~--------~~~~~~~~~~~~~l~~~~-~d~~i~l~d~~~~~~~~~~~~~~~------  151 (293)
                      .|+.|.+||..+++.......+.        .+..++|+|||++++++. .++.+.+||+.+.+.......+..      
T Consensus        94 ~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~  173 (368)
T d1mdah_          94 RTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPG  173 (368)
T ss_dssp             EEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEE
T ss_pred             cCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEccC
Confidence            47789999999998777655432        233689999999998876 579999999998877665543221      


Q ss_pred             --eeeeEEecCCCEEEEecCC-----------------CCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEE--Eeec
Q 022716          152 --VNEIAWNMTGEMFFLTTGN-----------------AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVR--TFTK  210 (293)
Q Consensus       152 --~~~v~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~--~~~~  210 (293)
                        ...+.+++++....+....                 .........+++..+.+.  .+.+.+++........  ....
T Consensus       174 ~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~v~~~~~~~~~~~~~~~~~~  251 (368)
T d1mdah_         174 AAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV--ASSILQGDIPAAGATMKAAIDG  251 (368)
T ss_dssp             ETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB--SSCCEEEECCSSCCEEECCCCS
T ss_pred             CCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEec--CCCEEEEeecCCceEEEeeccc
Confidence              1223334444444333211                 112245566666655544  3445666654432221  1111


Q ss_pred             c----------CCCeeEEEEccCCCEEEEecC---------CCcEEEEEcCCCCEEEEEecCCCcceeEECCCCCe--EE
Q 022716          211 L----------EWPVRTISFSHTGDYIASASE---------DLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNL--LA  269 (293)
Q Consensus       211 ~----------~~~v~~l~~sp~~~~l~s~s~---------d~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~--la  269 (293)
                      .          ......++++|++..++....         ...|.+||..+++.+..+.....+..++|+|||+.  ++
T Consensus       252 ~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~a~spDG~~~ly~  331 (368)
T d1mdah_         252 NESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYA  331 (368)
T ss_dssp             SCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEE
T ss_pred             ccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecCCCceeEEEECCCCCEEEEE
Confidence            1          112345788999887655422         13588999999998888777677899999999974  45


Q ss_pred             EEEcCCCCCCCC
Q 022716          270 YAGDDKNKYQAD  281 (293)
Q Consensus       270 ~~~~d~~~~~~~  281 (293)
                      ++..|+.+++||
T Consensus       332 s~~~~~~v~v~D  343 (368)
T d1mdah_         332 NSAGTEVLDIYD  343 (368)
T ss_dssp             EETTTTEEEEEE
T ss_pred             EeCCCCeEEEEE
Confidence            555555444444

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.44  E-value=1.1e-12  Score=110.35  Aligned_cols=245  Identities=11%  Similarity=0.023  Sum_probs=158.5

Q ss_pred             EEEEeCCCcEEEeecCCCCCCceeEEE----------------------------eeCCcCCeeEEEEcCCCCCEEEEEe
Q 022716           35 LASGSVDQTARVWHIEPHGHGKVKDIE----------------------------LRGHADSVDQLCWDPKHADLIATAS   86 (293)
Q Consensus        35 l~s~~~dg~v~iw~~~~~~~~~~~~~~----------------------------~~~h~~~i~~~~~~~~~~~~l~s~~   86 (293)
                      ++||+.+|+|++|++.+..  ....+.                            .-.|..........|++..++++..
T Consensus        14 f~Sgg~sG~V~V~dlpS~r--~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~   91 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMR--ELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDK   91 (441)
T ss_dssp             EEECBTTCCEEEEEETTTE--EEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEET
T ss_pred             EEeCCCCCcEEEEeCCCCc--EEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcC
Confidence            6789999999999986431  111110                            0113333444444566655566667


Q ss_pred             CCCeEEEEeCCCCeeeeeeee--cCceEEEEEcCCCC--EEEEEeCCC-----------------eEEEEEccccceeee
Q 022716           87 GDKTVRLWDARSGKCSQQAEL--SGENINITYKPDGT--HIAVGNRDD-----------------ELTILDVRKFKPIHR  145 (293)
Q Consensus        87 ~d~~i~vwd~~~~~~~~~~~~--~~~~~~~~~~~~~~--~l~~~~~d~-----------------~i~l~d~~~~~~~~~  145 (293)
                      .+..|.++|+++.++....+.  ...+..++|+|+|+  +++..+++.                 .+..+|..+.+...+
T Consensus        92 ~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~q  171 (441)
T d1qnia2          92 ANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQ  171 (441)
T ss_dssp             TTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEE
T ss_pred             CCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEE
Confidence            799999999999988776654  44567899999998  444444332                 234578777777777


Q ss_pred             ecccceeeeeEEecCCCEEEEecCCCC---------------EE------EEEECCCCCEEEEecCCCcEEEEeCCCCEE
Q 022716          146 RKFGYEVNEIAWNMTGEMFFLTTGNAG---------------CY------CIAIDPMGRYFAVGSADSLVSLWDISEMLC  204 (293)
Q Consensus       146 ~~~~~~~~~v~~~~~~~~~~~~~~~~~---------------~~------~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~  204 (293)
                      ...+.....+.+++++...++++.+..               +.      .+++.|+|+++..++ ++.+.+++......
T Consensus       172 I~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~-~~v~vvd~~~~~~v  250 (441)
T d1qnia2         172 VIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGD-SKVPVVDGRGESEF  250 (441)
T ss_dssp             EEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTT-CCCCEEECSSSCSS
T ss_pred             EecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCC-CCcEEEEcccCCce
Confidence            667777888999999998887764421               10      123457888776544 56777777666555


Q ss_pred             EEEeeccCCCeeEEEEccCCCEE-EEecCCCcEEEEEcCCCCE-----------EE-EEecCCCcceeEECCCCCeEEEE
Q 022716          205 VRTFTKLEWPVRTISFSHTGDYI-ASASEDLFIDISNVHTGRT-----------VH-QIPCRAAMNSVEWNPKYNLLAYA  271 (293)
Q Consensus       205 ~~~~~~~~~~v~~l~~sp~~~~l-~s~s~d~~i~iw~~~~~~~-----------~~-~~~~~~~i~~~~~sp~~~~la~~  271 (293)
                      +..+.... ....+.++|||+++ +++..+++|.+||+.+.+.           +. .....-...-.+|.++|+.+.+.
T Consensus       251 ~~~IPvgk-sPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~  329 (441)
T d1qnia2         251 TRYIPVPK-NPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTL  329 (441)
T ss_dssp             EEEECCBS-SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEE
T ss_pred             EEEEeCCC-CccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceEEEcc
Confidence            66665544 46889999999987 5677899999999865221           00 00000011234788988777777


Q ss_pred             EcCCCCCCCCcceEEEEeee
Q 022716          272 GDDKNKYQADEGVFRIYGFE  291 (293)
Q Consensus       272 ~~d~~~~~~~~~~~~~~~~~  291 (293)
                      ..|+        .+.-|++|
T Consensus       330 ~~ds--------~v~kw~~~  341 (441)
T d1qnia2         330 FIDS--------QVCKWNIA  341 (441)
T ss_dssp             TTTT--------EEEEEEHH
T ss_pred             cccc--------eEEEeccc
Confidence            6664        45556654

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.28  E-value=9.8e-09  Score=80.77  Aligned_cols=230  Identities=13%  Similarity=0.159  Sum_probs=131.2

Q ss_pred             ccccceeecCccccEEEEEECCCCCeEEEEeC-CCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeC
Q 022716            9 KNLHSREYTGHKKKVHSVAWNCTGTKLASGSV-DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASG   87 (293)
Q Consensus         9 ~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~-dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~   87 (293)
                      .+...+.++.+...+...+|||||+.||.... ++...+|....... .  ...+..+........|+|++..+++....
T Consensus        27 dG~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~spdg~~i~~~~~~  103 (269)
T d2hqsa1          27 DGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANG-A--VRQVASFPRHNGAPAFSPDGSKLAFALSK  103 (269)
T ss_dssp             TSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC-C--EEEEECCSSCEEEEEECTTSSEEEEEECT
T ss_pred             CCCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccC-c--eeEEeeeecccccceecCCCCeeeEeeec
Confidence            33445556667788899999999999986544 33333443322211 1  12344566778888999987655554444


Q ss_pred             CCeEEEE--eCCCCeeeeeeeecCceEEEEEcCCCCEEEEEe-CCC--eEEEEEccccceeeeecccceeeeeEEecCCC
Q 022716           88 DKTVRLW--DARSGKCSQQAELSGENINITYKPDGTHIAVGN-RDD--ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGE  162 (293)
Q Consensus        88 d~~i~vw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~--~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~  162 (293)
                      ++...++  .....................+++++..+...+ .++  .+.+.++.........                
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~----------------  167 (269)
T d2hqsa1         104 TGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRIT----------------  167 (269)
T ss_dssp             TSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECC----------------
T ss_pred             CCccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeecccccceeee----------------
Confidence            4443333  333333222223333444556777776555444 344  3444454433221111                


Q ss_pred             EEEEecCCCCEEEEEECCCCCEEEEecCCC---cEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecC---CCcE
Q 022716          163 MFFLTTGNAGCYCIAIDPMGRYFAVGSADS---LVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASE---DLFI  236 (293)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~---~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~---d~~i  236 (293)
                           ..........++|+++.++..+.++   .+.+.+...+..  .............|||||++|+-.+.   ...|
T Consensus       168 -----~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l  240 (269)
T d2hqsa1         168 -----WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV--QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVL  240 (269)
T ss_dssp             -----CSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE--EECCCSSSCEEEEECTTSSEEEEEEEETTEEEE
T ss_pred             -----cccccccccccccccceeEEEeecCCceeeeEeecccccc--eEeecCccccceEECCCCCEEEEEEcCCCCcEE
Confidence                 1122234556788888777665543   344456555543  23344556677899999999875543   3568


Q ss_pred             EEEEcCCCCEEEEEecCCCcceeEECCC
Q 022716          237 DISNVHTGRTVHQIPCRAAMNSVEWNPK  264 (293)
Q Consensus       237 ~iw~~~~~~~~~~~~~~~~i~~~~~sp~  264 (293)
                      +++++..+...........+...+|||-
T Consensus       241 ~~~~~dg~~~~~lt~~~g~~~~p~WSP~  268 (269)
T d2hqsa1         241 NLVSTDGRFKARLPATDGQVKFPAWSPY  268 (269)
T ss_dssp             EEEETTSCCEEECCCSSSEEEEEEECCC
T ss_pred             EEEECCCCCEEEEeCCCCcEEeEEeCCC
Confidence            8999977665443344556778899993

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.23  E-value=4.8e-09  Score=82.62  Aligned_cols=225  Identities=10%  Similarity=0.013  Sum_probs=139.5

Q ss_pred             ccEEEEEECCCCCeEEEE-eCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCC
Q 022716           21 KKVHSVAWNCTGTKLASG-SVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG   99 (293)
Q Consensus        21 ~~v~~l~~s~~~~~l~s~-~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~   99 (293)
                      -..+.++++++|+..++. +..+.+..++....   ........+. .....+++.+++ .++++....+.+++++..+.
T Consensus        14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~---~~~~~~~~~~-~~p~gvav~~~g-~i~v~d~~~~~i~~~~~~~~   88 (260)
T d1rwia_          14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGST---GTTVLPFNGL-YQPQGLAVDGAG-TVYVTDFNNRVVTLAAGSNN   88 (260)
T ss_dssp             CCEEEEEECTTCCEEEEECSSSCEEEEEC-------CEEECCCCSC-CSCCCEEECTTC-CEEEEETTTEEEEECTTCSC
T ss_pred             CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCc---eEEEeccCCc-cCceEEEEcCCC-CEEEeeeeeceeeeeeeccc
Confidence            456899999999966654 55677777765432   1111112221 223567787764 67777666667776665554


Q ss_pred             eeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEEC
Q 022716          100 KCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAID  179 (293)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  179 (293)
                      ...........+..+++.++++.+++-.....+..++.........                    ..........++++
T Consensus        89 ~~~~~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~p~~i~~~  148 (260)
T d1rwia_          89 QTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVL--------------------PFTGLNDPDGVAVD  148 (260)
T ss_dssp             CEECCCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEEC--------------------CCCSCCSCCEEEEC
T ss_pred             eeeeeeeeeeecccccccccceeEeeccccccccccccccceeeee--------------------eecccCCcceeeec
Confidence            4433333335567899999988777766666676666544221110                    00111233568889


Q ss_pred             CCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEec--CCCcc
Q 022716          180 PMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPC--RAAMN  257 (293)
Q Consensus       180 ~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~--~~~i~  257 (293)
                      |+++.+++...++.|..+|.+...........-.....|++.++|.++++....+.|..++...... ..+..  -....
T Consensus       149 ~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~-~~~~~~~~~~P~  227 (260)
T d1rwia_         149 NSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS-TVLPFTGLNTPL  227 (260)
T ss_dssp             TTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCC-EECCCCSCCCEE
T ss_pred             CCCCEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeE-EEEccCCCCCeE
Confidence            9999988888889999999876543322223334578899999999988888888888887654332 22211  12346


Q ss_pred             eeEECCCCCeEEEE
Q 022716          258 SVEWNPKYNLLAYA  271 (293)
Q Consensus       258 ~~~~sp~~~~la~~  271 (293)
                      .|+++++++++++-
T Consensus       228 ~i~~d~~g~l~vad  241 (260)
T d1rwia_         228 AVAVDSDRTVYVAD  241 (260)
T ss_dssp             EEEECTTCCEEEEE
T ss_pred             EEEEeCCCCEEEEE
Confidence            79999988876653

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.22  E-value=4.2e-09  Score=87.19  Aligned_cols=248  Identities=13%  Similarity=0.126  Sum_probs=134.2

Q ss_pred             ccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeC--CCeEEEEeC
Q 022716           19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASG--DKTVRLWDA   96 (293)
Q Consensus        19 h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~--d~~i~vwd~   96 (293)
                      ....+.-|+|+|+++.|.++.. +.+..|.++... ......... .......+.+++++...+++...  .+.+..+.+
T Consensus        38 ~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~-~~~~~~~~~-~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~  114 (365)
T d1jofa_          38 QDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPT-EIVHEASHP-IGGHPRANDADTNTRAIFLLAAKQPPYAVYANPF  114 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETT-EEEEEEEEE-CCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEE
T ss_pred             CCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCC-CeEEEeeec-CCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEc
Confidence            3445677999999999987754 678888776432 111111111 11122334455554322222221  334443332


Q ss_pred             ------------CCC-eeee---e--eeecCceEEEEEcCCCCEEEEEeC-CCeEEEEEccccceeeeecccceeeeeEE
Q 022716           97 ------------RSG-KCSQ---Q--AELSGENINITYKPDGTHIAVGNR-DDELTILDVRKFKPIHRRKFGYEVNEIAW  157 (293)
Q Consensus        97 ------------~~~-~~~~---~--~~~~~~~~~~~~~~~~~~l~~~~~-d~~i~l~d~~~~~~~~~~~~~~~~~~v~~  157 (293)
                                  ... ....   .  .+...++.++.|+|||+++++... ..+|.+++......+...      ..   
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~------~~---  185 (365)
T d1jofa_         115 YKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELV------GS---  185 (365)
T ss_dssp             SSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEE------EE---
T ss_pred             cCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeec------cc---
Confidence                        111 1100   0  112234568999999998888764 457888775432211100      00   


Q ss_pred             ecCCCEEEEecCCCCEEEEEECCCCCEE-EEecCCCcEEEEeCCCCE--EEEEeec-----------------cCCCeeE
Q 022716          158 NMTGEMFFLTTGNAGCYCIAIDPMGRYF-AVGSADSLVSLWDISEML--CVRTFTK-----------------LEWPVRT  217 (293)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~gs~d~~i~iwd~~~~~--~~~~~~~-----------------~~~~v~~  217 (293)
                            ............++|+|+++++ ++.-.+++|.+|++....  .+.....                 .......
T Consensus       186 ------~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (365)
T d1jofa_         186 ------VDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADV  259 (365)
T ss_dssp             ------EECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEE
T ss_pred             ------eeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccc
Confidence                  0111123456678999999876 555668899999986432  2221111                 1113567


Q ss_pred             EEEccCCCEEEEecC-C-----CcEEEEEcCCC-CEEEE--Ee----cCCCcceeEECC-CCCeEEEEEcCCCCCCCCcc
Q 022716          218 ISFSHTGDYIASASE-D-----LFIDISNVHTG-RTVHQ--IP----CRAAMNSVEWNP-KYNLLAYAGDDKNKYQADEG  283 (293)
Q Consensus       218 l~~sp~~~~l~s~s~-d-----~~i~iw~~~~~-~~~~~--~~----~~~~i~~~~~sp-~~~~la~~~~d~~~~~~~~~  283 (293)
                      +.++|+|++|+++.. +     ..|..+++... .....  +.    ....-+.++++| +|++|++++.+       .+
T Consensus       260 i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~-------s~  332 (365)
T d1jofa_         260 CALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQ-------EG  332 (365)
T ss_dssp             EEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSS-------SC
T ss_pred             eEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCC-------CC
Confidence            899999999877632 2     23666666543 22211  11    123467899998 78988888754       35


Q ss_pred             eEEEEeee
Q 022716          284 VFRIYGFE  291 (293)
Q Consensus       284 ~~~~~~~~  291 (293)
                      .+.||.++
T Consensus       333 ~v~v~~~~  340 (365)
T d1jofa_         333 WLEIYRWK  340 (365)
T ss_dssp             EEEEEEEE
T ss_pred             eEEEEEEe
Confidence            56666543

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.19  E-value=9.1e-11  Score=100.65  Aligned_cols=146  Identities=12%  Similarity=0.127  Sum_probs=106.1

Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecC
Q 022716          111 NINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSA  190 (293)
Q Consensus       111 ~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~  190 (293)
                      ...+.|.+++.++.  ..++.+.+||+.+.+........ .              +..+...+.++.|+||+++|+.++.
T Consensus        19 ~~~~~W~~d~~~~~--~~~~~~~~~~~~t~~~~~~~~~~-~--------------~~~~~~~i~~~~~SpDg~~i~~~~~   81 (470)
T d2bgra1          19 LYSLRWISDHEYLY--KQENNILVFNAEYGNSSVFLENS-T--------------FDEFGHSINDYSISPDGQFILLEYN   81 (470)
T ss_dssp             CCCCEECSSSEEEE--ESSSCEEEEETTTCCEEEEECTT-T--------------TTTSSSCCCEEEECTTSSEEEEEEE
T ss_pred             ccCCEeCCCCEEEE--EcCCcEEEEECCCCCEEEEEchh-h--------------hhhccCccceeEECCCCCEEEEEEC
Confidence            34678889887665  35788999999887653321100 0              0112234678889999999988753


Q ss_pred             ---------CCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEec---------
Q 022716          191 ---------DSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPC---------  252 (293)
Q Consensus       191 ---------d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~---------  252 (293)
                               ++.+.+||+++++ +..+..+...+....|||||+++|.. .++.+++|+..+++.......         
T Consensus        82 ~~~~~r~s~~~~~~l~d~~~~~-~~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g  159 (470)
T d2bgra1          82 YVKQWRHSYTASYDIYDLNKRQ-LITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNG  159 (470)
T ss_dssp             EEECSSSCEEEEEEEEETTTTE-ECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEES
T ss_pred             CcceeeeccCceEEEEECCCCc-ccccccCCccccccccccCcceeeEe-ecccceEEECCCCceeeeeeccCCCccccc
Confidence                     5678999999986 45677888899999999999999985 567899999988876543211         


Q ss_pred             ----------CCCcceeEECCCCCeEEEEEcCC
Q 022716          253 ----------RAAMNSVEWNPKYNLLAYAGDDK  275 (293)
Q Consensus       253 ----------~~~i~~~~~sp~~~~la~~~~d~  275 (293)
                                ......+.|||||++||+...|.
T Consensus       160 ~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~  192 (470)
T d2bgra1         160 ITDWVYEEEVFSAYSALWWSPNGTFLAYAQFND  192 (470)
T ss_dssp             BCCHHHHHHTSSSSBCEEECTTSSEEEEEEEEC
T ss_pred             ccceeeeeeecCCccccEECCCCCccceeEecC
Confidence                      12245688999999999998764

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.15  E-value=7.8e-08  Score=77.18  Aligned_cols=234  Identities=8%  Similarity=-0.047  Sum_probs=144.0

Q ss_pred             cEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCe-
Q 022716           22 KVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGK-  100 (293)
Q Consensus        22 ~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~-  100 (293)
                      .+..++++|||+.+++...+++|..|+.+.    ...  .+......+..+++.+++ +++++...++.+..++..... 
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g----~~~--~~~~~~~~~~gla~~~dG-~l~v~~~~~~~~~~~~~~~~~~  101 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDG----NQQ--IHATVEGKVSGLAFTSNG-DLVATGWNADSIPVVSLVKSDG  101 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTC----CEE--EEEECSSEEEEEEECTTS-CEEEEEECTTSCEEEEEECTTS
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCC----CEE--EEEcCCCCcceEEEcCCC-CeEEEecCCceEEEEEeccccc
Confidence            688999999999999999999887776542    211  233445678899999875 688888888888877764332 


Q ss_pred             -eeeeee--ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEE
Q 022716          101 -CSQQAE--LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIA  177 (293)
Q Consensus       101 -~~~~~~--~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  177 (293)
                       ......  .......+++.++++.+++.+.++.+..+|...........          ++................++
T Consensus       102 ~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~ngi~  171 (302)
T d2p4oa1         102 TVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLE----------HPMLARSNSESVFPAANGLK  171 (302)
T ss_dssp             CEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEE----------CGGGSCSSTTCCSCSEEEEE
T ss_pred             ceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEec----------CCccceeeccCccccccccc
Confidence             211111  12335578899999888888888888888876543211000          00000000000111223344


Q ss_pred             ECCCCCEEEEecCCCcEEEEeCCCCEEEE--EeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEecC--
Q 022716          178 IDPMGRYFAVGSADSLVSLWDISEMLCVR--TFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCR--  253 (293)
Q Consensus       178 ~~~~~~~l~~gs~d~~i~iwd~~~~~~~~--~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~--  253 (293)
                      ++. +..+++.+..+.|..++........  ...........++|.++|++.++...++.|..++.. ++........  
T Consensus       172 ~~~-~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~-G~~~~~~~~~~~  249 (302)
T d2p4oa1         172 RFG-NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQG  249 (302)
T ss_dssp             EET-TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGT
T ss_pred             ccC-CceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCC-CCEEEEEecCCC
Confidence            433 4456667778888888875432111  111122346779999999988888888999888764 4433333222  


Q ss_pred             -CCcceeEE---CCCCCeEEEEEcC
Q 022716          254 -AAMNSVEW---NPKYNLLAYAGDD  274 (293)
Q Consensus       254 -~~i~~~~~---sp~~~~la~~~~d  274 (293)
                       ...++++|   +||++.|..++..
T Consensus       250 ~~~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         250 VIGSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             CTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             CCCceEEEEcCCCCCCCEEEEECCC
Confidence             24678999   6788776555443

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.10  E-value=1.9e-07  Score=75.36  Aligned_cols=242  Identities=10%  Similarity=0.059  Sum_probs=134.4

Q ss_pred             cEEEEEECCCCCeEEEEeC-------CCcEEEeecCCCCCCceeEEEee---CCcCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716           22 KVHSVAWNCTGTKLASGSV-------DQTARVWHIEPHGHGKVKDIELR---GHADSVDQLCWDPKHADLIATASGDKTV   91 (293)
Q Consensus        22 ~v~~l~~s~~~~~l~s~~~-------dg~v~iw~~~~~~~~~~~~~~~~---~h~~~i~~~~~~~~~~~~l~s~~~d~~i   91 (293)
                      ....++|.++|+..++...       +|.|..||.....   .......   .....-..+.+.+++ +.++.+.....+
T Consensus        19 g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~---~~~~~~~~~~~~~g~P~Gl~~~~dg-~~l~vad~~~~i   94 (314)
T d1pjxa_          19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGK---KTVICKPEVNGYGGIPAGCQCDRDA-NQLFVADMRLGL   94 (314)
T ss_dssp             TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCC---EEEEECCEETTEECCEEEEEECSSS-SEEEEEETTTEE
T ss_pred             CCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCc---EEEEECCccccCCCcceeEEEeCCC-CEEEEEECCCeE
Confidence            4567899999997765432       4667777765421   1111110   111224568888865 456666666778


Q ss_pred             EEEeCCCCeeeeee-eecC----ceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEE
Q 022716           92 RLWDARSGKCSQQA-ELSG----ENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFL  166 (293)
Q Consensus        92 ~vwd~~~~~~~~~~-~~~~----~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  166 (293)
                      ...+.+........ ...+    .+..+++.++|...++-.. +....++.....      ....-.-..++++++...+
T Consensus        95 ~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~-~~~~~~~~~~~~------~~~~G~v~~~~~dg~~~~~  167 (314)
T d1pjxa_          95 LVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPA-GEVAPADYTRSM------QEKFGSIYCFTTDGQMIQV  167 (314)
T ss_dssp             EEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECB-CBCTTSCCCBTT------SSSCEEEEEECTTSCEEEE
T ss_pred             EEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCc-cCccccccccee------ccCCceEEEEeecCceeEe
Confidence            88887665432211 1112    1345788888876665432 111000000000      0000011223444443333


Q ss_pred             ecCCCCEEEEEECCCCC-----EEEEecCCCcEEEEeCCC-CEEE-----EEeecc-CCCeeEEEEccCCCEEEEecCCC
Q 022716          167 TTGNAGCYCIAIDPMGR-----YFAVGSADSLVSLWDISE-MLCV-----RTFTKL-EWPVRTISFSHTGDYIASASEDL  234 (293)
Q Consensus       167 ~~~~~~~~~~~~~~~~~-----~l~~gs~d~~i~iwd~~~-~~~~-----~~~~~~-~~~v~~l~~sp~~~~l~s~s~d~  234 (293)
                      ...-....-++++|++.     ++++-+..+.|..||+.. +...     ..+... ......+++.++|+..++....+
T Consensus       168 ~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g  247 (314)
T d1pjxa_         168 DTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSS  247 (314)
T ss_dssp             EEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTT
T ss_pred             eCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCC
Confidence            33223334577777653     556667788899988653 2221     111111 22356799999999888887889


Q ss_pred             cEEEEEcCCCCEEEEEec-CCCcceeEECCCCCeE-EEEEcC
Q 022716          235 FIDISNVHTGRTVHQIPC-RAAMNSVEWNPKYNLL-AYAGDD  274 (293)
Q Consensus       235 ~i~iw~~~~~~~~~~~~~-~~~i~~~~~sp~~~~l-a~~~~d  274 (293)
                      .|.++|...++.+..+.. ....++++|.|+++.| ++.+.+
T Consensus       248 ~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~  289 (314)
T d1pjxa_         248 HIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHEN  289 (314)
T ss_dssp             EEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTT
T ss_pred             EEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCC
Confidence            999999988776555543 3457889999999754 444433

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.10  E-value=3.2e-07  Score=71.76  Aligned_cols=183  Identities=13%  Similarity=0.084  Sum_probs=117.8

Q ss_pred             eEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCC---eEEEEEccccceeeeecccceeeeeEEecCCCEEEE
Q 022716           90 TVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDD---ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFL  166 (293)
Q Consensus        90 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~---~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  166 (293)
                      .|.+.|.+.............+.+.+|+|||+.|+......   .+.+.+....................|++++..+..
T Consensus        20 ~l~i~d~dG~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~i~~   99 (269)
T d2hqsa1          20 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAF   99 (269)
T ss_dssp             EEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             EEEEEcCCCCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeeeecccccceecCCCCeeeE
Confidence            46677776666555556677778899999999998776433   466677777666555556666777889999887765


Q ss_pred             ecCCC-----------------------CEEEEEECCCCCEEEE-ecCCCc--EEEEeCCCCEEEEEeeccCCCeeEEEE
Q 022716          167 TTGNA-----------------------GCYCIAIDPMGRYFAV-GSADSL--VSLWDISEMLCVRTFTKLEWPVRTISF  220 (293)
Q Consensus       167 ~~~~~-----------------------~~~~~~~~~~~~~l~~-gs~d~~--i~iwd~~~~~~~~~~~~~~~~v~~l~~  220 (293)
                      .....                       ......+++++..+.. ...++.  |.+.++..... ..+...........+
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~  178 (269)
T d2hqsa1         100 ALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADV  178 (269)
T ss_dssp             EECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEE
T ss_pred             eeecCCccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeecccccc-eeeeccccccccccc
Confidence            44321                       1223345566654443 334443  55556555532 233445556777889


Q ss_pred             ccCCCEEEEecCC-CcE--EEEEcCCCCEEEEEecCCCcceeEECCCCCeEEEEEcC
Q 022716          221 SHTGDYIASASED-LFI--DISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDD  274 (293)
Q Consensus       221 sp~~~~l~s~s~d-~~i--~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~d  274 (293)
                      +|+++.++..+.+ +..  .+.+...+.. .............|||||+.||..+..
T Consensus       179 spdg~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~p~~SPDG~~i~f~s~~  234 (269)
T d2hqsa1         179 SSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTFLDETPSLAPNGTMVIYSSSQ  234 (269)
T ss_dssp             CTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSSSCEEEEECTTSSEEEEEEEE
T ss_pred             ccccceeEEEeecCCceeeeEeecccccc-eEeecCccccceEECCCCCEEEEEEcC
Confidence            9999998777654 444  4445444443 333444456678999999999988764

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.03  E-value=1.5e-06  Score=68.70  Aligned_cols=236  Identities=12%  Similarity=0.151  Sum_probs=147.5

Q ss_pred             cEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeC----CcCCeeEEEEcCCCCCEEEE-EeCCCeEEEEeC
Q 022716           22 KVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG----HADSVDQLCWDPKHADLIAT-ASGDKTVRLWDA   96 (293)
Q Consensus        22 ~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~----h~~~i~~~~~~~~~~~~l~s-~~~d~~i~vwd~   96 (293)
                      ....++++++|+.+++-..++.|++||.+..   ........+    ....-..+.+.+.....++. .+.+..|.+++.
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~G~---~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~  100 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKEGR---FKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ  100 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTTSC---EEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCCCC---EEEEecccCCCcccccccccccccccccccceeccCCccccccccc
Confidence            4789999999998888778899999986521   111111111    11122344444443334433 344567777775


Q ss_pred             CCCeeeeeeee--cCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEE
Q 022716           97 RSGKCSQQAEL--SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCY  174 (293)
Q Consensus        97 ~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  174 (293)
                      . +.....+..  ...+..+++.++|..+++....+.+.+++... +.+....                  ...+.....
T Consensus       101 ~-g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g-~~~~~~g------------------~~~~~~~~~  160 (279)
T d1q7fa_         101 Y-GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-NVLHKFG------------------CSKHLEFPN  160 (279)
T ss_dssp             T-SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-CEEEEEE------------------CTTTCSSEE
T ss_pred             c-ccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCC-ceeeccc------------------ccccccccc
Confidence            4 343333321  23456788888888888777777777776543 2111110                  011233456


Q ss_pred             EEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEee--ccCCCeeEEEEccCCCEEEEecC-CCcEEEEEcCCCCEEEEEe
Q 022716          175 CIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT--KLEWPVRTISFSHTGDYIASASE-DLFIDISNVHTGRTVHQIP  251 (293)
Q Consensus       175 ~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~--~~~~~v~~l~~sp~~~~l~s~s~-d~~i~iw~~~~~~~~~~~~  251 (293)
                      .++++++++.+++....+.|++||.. ++.+.++.  +.......|++.|+|+.+++-.. +..|.+++. +|+.+..+.
T Consensus       161 ~i~~d~~g~i~v~d~~~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~  238 (279)
T d1q7fa_         161 GVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALE  238 (279)
T ss_dssp             EEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEE
T ss_pred             eeeeccceeEEeeeccccceeeeecC-CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEe
Confidence            78889999999999989999999964 44555553  23345789999999998877654 456888884 677766654


Q ss_pred             cC---CCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeee
Q 022716          252 CR---AAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE  291 (293)
Q Consensus       252 ~~---~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~  291 (293)
                      ..   .....|+..|+|++++ ++.+        ..+++|.+.
T Consensus       239 ~~~~~~~p~~vav~~dG~l~V-~~~n--------~~v~~fr~~  272 (279)
T d1q7fa_         239 SKVKHAQCFDVALMDDGSVVL-ASKD--------YRLYIYRYV  272 (279)
T ss_dssp             ESSCCSCEEEEEEETTTEEEE-EETT--------TEEEEEECS
T ss_pred             CCCCCCCEeEEEEeCCCcEEE-EeCC--------CeEEEEEee
Confidence            32   2356899999997655 4433        357777653

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.79  E-value=1.7e-06  Score=69.56  Aligned_cols=201  Identities=10%  Similarity=0.047  Sum_probs=120.6

Q ss_pred             EEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCc----CCeeEEEEcCCCCCEEEEEeC-----------
Q 022716           23 VHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHA----DSVDQLCWDPKHADLIATASG-----------   87 (293)
Q Consensus        23 v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~----~~i~~~~~~~~~~~~l~s~~~-----------   87 (293)
                      -..++|+++|+.|+++...+.+...+.+..    ...+......    ...+.+.+.+++ .+.+|-..           
T Consensus        73 P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~----~~~~~~~~~~g~~~~~pndl~~d~~G-~lyvtd~~~~~~~~~~~~~  147 (314)
T d1pjxa_          73 PAGCQCDRDANQLFVADMRLGLLVVQTDGT----FEEIAKKDSEGRRMQGCNDCAFDYEG-NLWITAPAGEVAPADYTRS  147 (314)
T ss_dssp             EEEEEECSSSSEEEEEETTTEEEEEETTSC----EEECCSBCTTSCBCBCCCEEEECTTS-CEEEEECBCBCTTSCCCBT
T ss_pred             ceeEEEeCCCCEEEEEECCCeEEEEeCCCc----EEEEEeccccccccCCCcEEEECCCC-CEEEecCccCcccccccce
Confidence            567999999998888887777777776532    1111111111    125678888864 56665321           


Q ss_pred             ----CCeEEEEeCCCCeeeeeeeecCceEEEEEcCCCC-----EEEEEeCCCeEEEEEccccceeeeecccceeeeeEEe
Q 022716           88 ----DKTVRLWDARSGKCSQQAELSGENINITYKPDGT-----HIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWN  158 (293)
Q Consensus        88 ----d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~  158 (293)
                          ++.|..++.+ ++.......-..+..++|+|+++     .+++-+..++|..+|+.....+....       +...
T Consensus       148 ~~~~~G~v~~~~~d-g~~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~-------~~~~  219 (314)
T d1pjxa_         148 MQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKK-------VWGH  219 (314)
T ss_dssp             TSSSCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEE-------EEEE
T ss_pred             eccCCceEEEEeec-CceeEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceee-------EEEE
Confidence                2234444432 23222222223345788888764     34444567888888865432221110       0000


Q ss_pred             cCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCE-EEEecCCCcEE
Q 022716          159 MTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDY-IASASEDLFID  237 (293)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~-l~s~s~d~~i~  237 (293)
                      ..      .......--++++++|+++++....+.|..||.+.+.....+......+.+++|.|+++. .++.+..+.|.
T Consensus       220 ~~------~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~  293 (314)
T d1pjxa_         220 IP------GTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVW  293 (314)
T ss_dssp             CC------CCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEE
T ss_pred             cc------ccccccceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEE
Confidence            00      001112345888999999888888899999998876555555555567899999999974 57777888888


Q ss_pred             EEEcC
Q 022716          238 ISNVH  242 (293)
Q Consensus       238 iw~~~  242 (293)
                      ..+..
T Consensus       294 ~~~~~  298 (314)
T d1pjxa_         294 KFEWQ  298 (314)
T ss_dssp             EEECS
T ss_pred             EEECC
Confidence            77764

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.79  E-value=9.8e-06  Score=64.52  Aligned_cols=203  Identities=10%  Similarity=0.050  Sum_probs=132.0

Q ss_pred             CeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeec
Q 022716           68 SVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK  147 (293)
Q Consensus        68 ~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~  147 (293)
                      .+..+++.|++ .++++...+++|..|+... .........+.+..+++.|+|+.+++...++.+..++.........  
T Consensus        29 ~~e~iAv~pdG-~l~vt~~~~~~I~~i~p~g-~~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~--  104 (302)
T d2p4oa1          29 FLENLASAPDG-TIFVTNHEVGEIVSITPDG-NQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVE--  104 (302)
T ss_dssp             CEEEEEECTTS-CEEEEETTTTEEEEECTTC-CEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEE--
T ss_pred             CcCCEEECCCC-CEEEEeCCCCEEEEEeCCC-CEEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEeccccccee--
Confidence            46788999975 6888988899999988654 4444455677788999999999988888888888877544221110  


Q ss_pred             ccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeec--------c--CCCeeE
Q 022716          148 FGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK--------L--EWPVRT  217 (293)
Q Consensus       148 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~--------~--~~~v~~  217 (293)
                                     .+...........+++.++++++++-+.++.+..+|...+........        .  ......
T Consensus       105 ---------------~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ng  169 (302)
T d2p4oa1         105 ---------------TLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANG  169 (302)
T ss_dssp             ---------------EEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEE
T ss_pred             ---------------eccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccccccc
Confidence                           001112233456788999999999988899999999887643321111        1  123455


Q ss_pred             EEEccCCCEEEEecCCCcEEEEEcCCCCEE---EEEecCCCcceeEECCCCCeEEEEEcCCCCCCCC-c-ceEEEEee
Q 022716          218 ISFSHTGDYIASASEDLFIDISNVHTGRTV---HQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQAD-E-GVFRIYGF  290 (293)
Q Consensus       218 l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~---~~~~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~-~-~~~~~~~~  290 (293)
                      +.+.. +...++.+..+.|+.++.......   ...........+++.++|+++++...++.++..+ . ...++..+
T Consensus       170 i~~~~-~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~~~~~~~  246 (302)
T d2p4oa1         170 LKRFG-NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQA  246 (302)
T ss_dssp             EEEET-TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEECG
T ss_pred             ccccC-CceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCCEEEEEec
Confidence            65543 334566677888888887654322   2222344567899999999887776665555432 2 33345443

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.75  E-value=2.5e-05  Score=62.68  Aligned_cols=239  Identities=9%  Similarity=0.022  Sum_probs=140.6

Q ss_pred             ccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeC----CCeEEEEeC
Q 022716           21 KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASG----DKTVRLWDA   96 (293)
Q Consensus        21 ~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~----d~~i~vwd~   96 (293)
                      ..+..++|+++|+..++-..++.|..|+.+..   ... ............+++.+++ .++++...    .+.+...+.
T Consensus        40 ~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~---~~~-~~~~~~~~~p~gla~~~dG-~l~va~~~~~~~~~~i~~~~~  114 (319)
T d2dg1a1          40 LQLEGLNFDRQGQLFLLDVFEGNIFKINPETK---EIK-RPFVSHKANPAAIKIHKDG-RLFVCYLGDFKSTGGIFAATE  114 (319)
T ss_dssp             CCEEEEEECTTSCEEEEETTTCEEEEECTTTC---CEE-EEEECSSSSEEEEEECTTS-CEEEEECTTSSSCCEEEEECT
T ss_pred             cCcEeCEECCCCCEEEEECCCCEEEEEECCCC---eEE-EEEeCCCCCeeEEEECCCC-CEEEEecCCCccceeEEEEcC
Confidence            34678999999997777777888888876532   111 1222344456788998874 56665433    233444454


Q ss_pred             CCCeeeeeeee---cCceEEEEEcCCCCEEEEEeCC------CeEEEEEccccceeeeecccceeeeeEEecCCCE-EEE
Q 022716           97 RSGKCSQQAEL---SGENINITYKPDGTHIAVGNRD------DELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEM-FFL  166 (293)
Q Consensus        97 ~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~d------~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~  166 (293)
                      ...........   ...+..+++.++|+..++....      +.+..++                      +.+.. ..+
T Consensus       115 ~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~----------------------~dg~~~~~~  172 (319)
T d2dg1a1         115 NGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVS----------------------PDFRTVTPI  172 (319)
T ss_dssp             TSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEEC----------------------TTSCCEEEE
T ss_pred             CCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEe----------------------cccceeEEE
Confidence            44433222221   1224457888888765553221      1122222                      22211 111


Q ss_pred             ecCCCCEEEEEECCCCCEE-EEecCCCcEEEEeCCCC----EEEEE----eeccCCCeeEEEEccCCCEEEEecCCCcEE
Q 022716          167 TTGNAGCYCIAIDPMGRYF-AVGSADSLVSLWDISEM----LCVRT----FTKLEWPVRTISFSHTGDYIASASEDLFID  237 (293)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~l-~~gs~d~~i~iwd~~~~----~~~~~----~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~  237 (293)
                      ...-....-++++|+++.| ++-+..+.|..|++...    .....    ..........+++.++|++.++....+.|.
T Consensus       173 ~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~  252 (319)
T d2dg1a1         173 IQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVL  252 (319)
T ss_dssp             EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEE
T ss_pred             eeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEE
Confidence            1112234568899999754 66677889999987531    11111    111112367899999999888888999999


Q ss_pred             EEEcCCCCEEEEEecC-------CCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeee
Q 022716          238 ISNVHTGRTVHQIPCR-------AAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE  291 (293)
Q Consensus       238 iw~~~~~~~~~~~~~~-------~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~  291 (293)
                      +++. .|+.+..+..-       ..+.+++|.|..+.+.+...+.    ...+...||.++
T Consensus       253 ~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~~~----~~~~~g~l~~~~  308 (319)
T d2dg1a1         253 VFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI----EMGGGSMLYTVN  308 (319)
T ss_dssp             EECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG----GGTCCEEEEEEE
T ss_pred             EECC-CCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcCCC----CcCCceeEEEEe
Confidence            9996 68888766432       2467999999888776666542    122344555554

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.72  E-value=2.3e-06  Score=70.26  Aligned_cols=168  Identities=11%  Similarity=0.141  Sum_probs=98.6

Q ss_pred             ccEEEEEECCCCCeEEEEeC-CCcEEEeecCCCCCCcee-EEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCC
Q 022716           21 KKVHSVAWNCTGTKLASGSV-DQTARVWHIEPHGHGKVK-DIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS   98 (293)
Q Consensus        21 ~~v~~l~~s~~~~~l~s~~~-dg~v~iw~~~~~~~~~~~-~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~   98 (293)
                      ..++++.|+|||+++++++. ...|.+|+.......... .............+.|+|++..++++...+++|.+|+...
T Consensus       145 ~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~  224 (365)
T d1jofa_         145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDP  224 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             CcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecC
Confidence            45899999999998877754 467888876543211111 1111122345678999998765556666689999999866


Q ss_pred             Ceeeee-----eee---------------cCceEEEEEcCCCCEEEEEeC-C-----CeEEEEEccccceeeeeccccee
Q 022716           99 GKCSQQ-----AEL---------------SGENINITYKPDGTHIAVGNR-D-----DELTILDVRKFKPIHRRKFGYEV  152 (293)
Q Consensus        99 ~~~~~~-----~~~---------------~~~~~~~~~~~~~~~l~~~~~-d-----~~i~l~d~~~~~~~~~~~~~~~~  152 (293)
                      +.....     ...               ......+.++|||++|+++.. +     ..+..+++.....+.....    
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~----  300 (365)
T d1jofa_         225 ATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLF----  300 (365)
T ss_dssp             TTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEE----
T ss_pred             CCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeE----
Confidence            532211     110               011345789999999888743 1     2355565543222211100    


Q ss_pred             eeeEEecCCCEEEEecCCCCEEEEEECC-CCCEEEEe-cCCCcEEEEeCCCC
Q 022716          153 NEIAWNMTGEMFFLTTGNAGCYCIAIDP-MGRYFAVG-SADSLVSLWDISEM  202 (293)
Q Consensus       153 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~g-s~d~~i~iwd~~~~  202 (293)
                        +.        ...........++++| +|++|+++ ..++.|.+|+....
T Consensus       301 --~~--------~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         301 --LS--------PTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             --EE--------ECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             --ee--------EEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence              00        0001122344678888 78876555 57899999987554

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.70  E-value=3.2e-06  Score=65.92  Aligned_cols=193  Identities=9%  Similarity=0.023  Sum_probs=122.0

Q ss_pred             cEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCee
Q 022716           22 KVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKC  101 (293)
Q Consensus        22 ~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~  101 (293)
                      ....++++++|+.+++....+.+++++-...   . . ............+++.+++ +++++-..+..+..++......
T Consensus        58 ~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~---~-~-~~~~~~~~~p~~iavd~~g-~i~v~d~~~~~~~~~~~~~~~~  131 (260)
T d1rwia_          58 QPQGLAVDGAGTVYVTDFNNRVVTLAAGSNN---Q-T-VLPFDGLNYPEGLAVDTQG-AVYVADRGNNRVVKLAAGSKTQ  131 (260)
T ss_dssp             SCCCEEECTTCCEEEEETTTEEEEECTTCSC---C-E-ECCCCSCCSEEEEEECTTC-CEEEEEGGGTEEEEECTTCSSC
T ss_pred             CceEEEEcCCCCEEEeeeeeceeeeeeeccc---e-e-eeeeeeeeecccccccccc-eeEeecccccccccccccccee
Confidence            4578899999988877777777776643321   1 1 1111222446788888764 5666655666677776544332


Q ss_pred             ee-eeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECC
Q 022716          102 SQ-QAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDP  180 (293)
Q Consensus       102 ~~-~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  180 (293)
                      .. .......+..+++.|+++.+++...++.+..+|..........                    ...-.....+++++
T Consensus       132 ~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~--------------------~~~~~~p~gi~~d~  191 (260)
T d1rwia_         132 TVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLP--------------------FTDITAPWGIAVDE  191 (260)
T ss_dssp             EECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECC--------------------CSSCCSEEEEEECT
T ss_pred             eeeeecccCCcceeeecCCCCEeeeccccccccccccccceeeeee--------------------ccccCCCccceeee
Confidence            11 1112234567899999998888888888888887653321100                    01123356789999


Q ss_pred             CCCEEEEecCCCcEEEEeCCCCEEEEEee-ccCCCeeEEEEccCCCEEEEecCCCcEEEEEc
Q 022716          181 MGRYFAVGSADSLVSLWDISEMLCVRTFT-KLEWPVRTISFSHTGDYIASASEDLFIDISNV  241 (293)
Q Consensus       181 ~~~~l~~gs~d~~i~iwd~~~~~~~~~~~-~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~  241 (293)
                      +++++++-...+.|..++...... ..+. ..-.....|+++++|..+++-..++.|...+.
T Consensus       192 ~g~l~vsd~~~~~i~~~~~~~~~~-~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~  252 (260)
T d1rwia_         192 AGTVYVTEHNTNQVVKLLAGSTTS-TVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTS  252 (260)
T ss_dssp             TCCEEEEETTTTEEEEECTTCSCC-EECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred             eeeeeeeecCCCEEEEEeCCCCeE-EEEccCCCCCeEEEEEeCCCCEEEEECCCCEEEEEeC
Confidence            999999888888898888755432 2222 12245789999999988777666666665543

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.58  E-value=7.6e-05  Score=59.74  Aligned_cols=199  Identities=14%  Similarity=0.059  Sum_probs=113.3

Q ss_pred             ccccEEEEEECCCCCeEEEEeCC--CcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeC------CCe
Q 022716           19 HKKKVHSVAWNCTGTKLASGSVD--QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASG------DKT   90 (293)
Q Consensus        19 h~~~v~~l~~s~~~~~l~s~~~d--g~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~------d~~   90 (293)
                      .......+++++||+.+++...+  ....++.++...........-..-....+.+.+.+++ .++++-..      .+.
T Consensus        80 ~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G-~l~vtd~~~~~~~~~g~  158 (319)
T d2dg1a1          80 HKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKG-GFYFTDFRGYSTNPLGG  158 (319)
T ss_dssp             SSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTS-CEEEEECCCBTTBCCEE
T ss_pred             CCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeEEecc-ceeecccccccccCcce
Confidence            34567889999999887765432  3444554443221111111111112346778888875 56665332      123


Q ss_pred             EEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEE-eCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecC
Q 022716           91 VRLWDARSGKCSQQAELSGENINITYKPDGTHIAVG-NRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG  169 (293)
Q Consensus        91 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  169 (293)
                      +..++...+........-..+..++|+|+++.|.++ +..++|..+|+...........    ..+        ......
T Consensus       159 v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~----~~~--------~~~~~~  226 (319)
T d2dg1a1         159 VYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFG----ATI--------PYYFTG  226 (319)
T ss_dssp             EEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEE----EEE--------EEECCS
T ss_pred             eEEEecccceeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceecccc----cee--------eeccCC
Confidence            444454443332222223345679999999876544 5678999998754321110000    000        001111


Q ss_pred             CCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeec------cCCCeeEEEEccCCCEEEEec
Q 022716          170 NAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK------LEWPVRTISFSHTGDYIASAS  231 (293)
Q Consensus       170 ~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~------~~~~v~~l~~sp~~~~l~s~s  231 (293)
                      ....--++++++|++.++....+.|..||. .++.+..+.-      +...+.+++|.|++..+++.+
T Consensus       227 ~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~  293 (319)
T d2dg1a1         227 HEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICS  293 (319)
T ss_dssp             SSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEE
T ss_pred             ccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEc
Confidence            122345889999999998888999999995 6776666542      233578999999887665544

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.43  E-value=5.6e-05  Score=58.64  Aligned_cols=208  Identities=10%  Similarity=0.006  Sum_probs=109.5

Q ss_pred             EECCC--CCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCC-----eEEEEeCCCC
Q 022716           27 AWNCT--GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDK-----TVRLWDARSG   99 (293)
Q Consensus        27 ~~s~~--~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~-----~i~vwd~~~~   99 (293)
                      ..|||  |+++|..+ +|.|.+.|++..   ..  ..+..+...+....|+|++..+.++...++     .|.+++...+
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g---~~--~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g   78 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSG---ST--RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENG   78 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTC---CE--EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTT
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCC---CE--EEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCC
Confidence            35788  99988665 456777777642   22  235556677888999998765555543332     3667777777


Q ss_pred             eeeeeeeec-------CceEEEEEcCCCCEEEEEeCC------CeEEEEEccccceeeeecccceeeeeEEecCCCEEEE
Q 022716          100 KCSQQAELS-------GENINITYKPDGTHIAVGNRD------DELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFL  166 (293)
Q Consensus       100 ~~~~~~~~~-------~~~~~~~~~~~~~~l~~~~~d------~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  166 (293)
                      +........       .......|+|+|+.++.....      ..+...+..........  ... ..-.|.+.+.....
T Consensus        79 ~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~  155 (281)
T d1k32a2          79 EIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLN--LGP-ATHILFADGRRVIG  155 (281)
T ss_dssp             EEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECC--SCS-CSEEEEETTEEEEE
T ss_pred             ceEEeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEec--CCc-cceeeecCCCeEEE
Confidence            654432211       123457899999988875432      23444554443322111  001 11122222222211


Q ss_pred             e--------------------------------cCCCCEEEEEECCCCCEEEEecC--CCcEEEEeCCCCEEEEEeeccC
Q 022716          167 T--------------------------------TGNAGCYCIAIDPMGRYFAVGSA--DSLVSLWDISEMLCVRTFTKLE  212 (293)
Q Consensus       167 ~--------------------------------~~~~~~~~~~~~~~~~~l~~gs~--d~~i~iwd~~~~~~~~~~~~~~  212 (293)
                      .                                ..........+.++. .+.....  ...|.++|+...... .+....
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~d~~g~~~~-~lt~~~  233 (281)
T d1k32a2         156 RNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHR-IYFITDIDGFGQIYSTDLDGKDLR-KHTSFT  233 (281)
T ss_dssp             ESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETTE-EEEEECTTSSCEEEEEETTSCSCE-ECCCCC
T ss_pred             eeccccceeeeeccCCcceeeeeccccceeeccCCccccceeeeeccc-cceecccccccceEEEeCCCCceE-EeecCC
Confidence            1                                111111222333332 2222222  234677777665432 333322


Q ss_pred             CCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEE
Q 022716          213 WPVRTISFSHTGDYIASASEDLFIDISNVHTGRTV  247 (293)
Q Consensus       213 ~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~  247 (293)
                       ......|+|||+.|+.. .++.|+++|+.+++..
T Consensus       234 -~~~~~~~SpDG~~I~f~-~~~~l~~~d~~~g~~~  266 (281)
T d1k32a2         234 -DYYPRHLNTDGRRILFS-KGGSIYIFNPDTEKIE  266 (281)
T ss_dssp             -SSCEEEEEESSSCEEEE-ETTEEEEECTTTCCEE
T ss_pred             -CcccccCcCCCCEEEEE-eCCEEEEEECCCCCEE
Confidence             22234689999988764 4578999999887643

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.37  E-value=0.00028  Score=55.61  Aligned_cols=197  Identities=12%  Similarity=0.054  Sum_probs=130.6

Q ss_pred             EEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeec----
Q 022716           72 LCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK----  147 (293)
Q Consensus        72 ~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~----  147 (293)
                      ..|.+.++.++.+=-..+.|..||.++++. ..+.....+.++++.++|..+++ +. ..+..+|..+.+......    
T Consensus        23 p~wd~~~~~l~wvDi~~~~I~r~d~~~g~~-~~~~~~~~~~~i~~~~dg~l~va-~~-~gl~~~d~~tg~~~~l~~~~~~   99 (295)
T d2ghsa1          23 PTFDPASGTAWWFNILERELHELHLASGRK-TVHALPFMGSALAKISDSKQLIA-SD-DGLFLRDTATGVLTLHAELESD   99 (295)
T ss_dssp             EEEETTTTEEEEEEGGGTEEEEEETTTTEE-EEEECSSCEEEEEEEETTEEEEE-ET-TEEEEEETTTCCEEEEECSSTT
T ss_pred             CeEECCCCEEEEEECCCCEEEEEECCCCeE-EEEECCCCcEEEEEecCCCEEEE-Ee-CccEEeecccceeeEEeeeecC
Confidence            356666556666655678899999988764 34556677778888888876655 44 468889988765432221    


Q ss_pred             -ccceeeeeEEecCCCEEEEecCC------------------------CCEEEEEECCCCCEE-EEecCCCcEEEEeCCC
Q 022716          148 -FGYEVNEIAWNMTGEMFFLTTGN------------------------AGCYCIAIDPMGRYF-AVGSADSLVSLWDISE  201 (293)
Q Consensus       148 -~~~~~~~v~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~l-~~gs~d~~i~iwd~~~  201 (293)
                       .....+++..++.|..++.....                        .....++++++++.+ ++-+..+.|..|++..
T Consensus       100 ~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~  179 (295)
T d2ghsa1         100 LPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDA  179 (295)
T ss_dssp             CTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCT
T ss_pred             CCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeeccCCcceeeecCCCceEEEeecccceeeEeeecc
Confidence             12356777777777765543211                        112457889998754 5556788899888642


Q ss_pred             --C------EEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEecC-CCcceeEEC-CCCCeEEEE
Q 022716          202 --M------LCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCR-AAMNSVEWN-PKYNLLAYA  271 (293)
Q Consensus       202 --~------~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~-~~i~~~~~s-p~~~~la~~  271 (293)
                        +      .....+.+.......+++..+|++.++.-..+.|..+|. +|+.+..+..- ..+++++|- |+.+.|..+
T Consensus       180 ~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~FGG~d~~~LyvT  258 (295)
T d2ghsa1         180 RTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVT  258 (295)
T ss_dssp             TTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEE
T ss_pred             cccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCCCCceEEEEEeCCCCCEEEEE
Confidence              1      111222334456788999999998887777788999995 68888777653 358899995 677655444


Q ss_pred             E
Q 022716          272 G  272 (293)
Q Consensus       272 ~  272 (293)
                      +
T Consensus       259 t  259 (295)
T d2ghsa1         259 S  259 (295)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=1.7e-05  Score=67.24  Aligned_cols=238  Identities=10%  Similarity=0.098  Sum_probs=130.0

Q ss_pred             EEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeC---CcCCeeEEEEcCCCCCEEEEE--------eCCCeEEEE
Q 022716           26 VAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG---HADSVDQLCWDPKHADLIATA--------SGDKTVRLW   94 (293)
Q Consensus        26 l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~---h~~~i~~~~~~~~~~~~l~s~--------~~d~~i~vw   94 (293)
                      ..|.+++.++. -..||.+.+|++..+.. .   .-+..   ..-.+....++|++..+|+..        +..+.+.++
T Consensus        22 ~~W~~~~~~~~-~~~~g~i~~~~~~~~~~-~---~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~   96 (465)
T d1xfda1          22 AKWISDTEFIY-REQKGTVRLWNVETNTS-T---VLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS   96 (465)
T ss_dssp             CCBSSSSCBCC-CCSSSCEEEBCGGGCCC-E---EEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred             CEEeCCCcEEE-EeCCCcEEEEECCCCCE-E---EEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEE
Confidence            46888887654 45678999999875422 1   11112   123466778899865444432        234678899


Q ss_pred             eCCCCeeeeeeee---cCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccce-------------------e
Q 022716           95 DARSGKCSQQAEL---SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYE-------------------V  152 (293)
Q Consensus        95 d~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~-------------------~  152 (293)
                      |+.++........   ........|+|||+.++-.. ++.+.+.+.......+....+.+                   -
T Consensus        97 d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~  175 (465)
T d1xfda1          97 KIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTH  175 (465)
T ss_dssp             ESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSS
T ss_pred             EccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhcccc
Confidence            9988765433221   12223478999999998875 67888888766554443321110                   1


Q ss_pred             eeeEEecCCCEEEEecC-CCCE--EEEEECCCC-----C---EEEEecCC--CcEEEEeCCCCEEEEEee------ccCC
Q 022716          153 NEIAWNMTGEMFFLTTG-NAGC--YCIAIDPMG-----R---YFAVGSAD--SLVSLWDISEMLCVRTFT------KLEW  213 (293)
Q Consensus       153 ~~v~~~~~~~~~~~~~~-~~~~--~~~~~~~~~-----~---~l~~gs~d--~~i~iwd~~~~~~~~~~~------~~~~  213 (293)
                      ..+-|+|+|..+.+..- +..+  ..+......     .   +-..|...  ..+.++|+..+.......      ..+.
T Consensus       176 ~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~  255 (465)
T d1xfda1         176 IAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREY  255 (465)
T ss_dssp             EEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSE
T ss_pred             ceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccc
Confidence            23457777776655331 1111  111100000     0   00111111  246677776543211111      1122


Q ss_pred             CeeEEEEccCCCEEEEec-CC---CcEEEEEcCCCCEEEEEe--cCCCc----ceeEECCCCCeEE
Q 022716          214 PVRTISFSHTGDYIASAS-ED---LFIDISNVHTGRTVHQIP--CRAAM----NSVEWNPKYNLLA  269 (293)
Q Consensus       214 ~v~~l~~sp~~~~l~s~s-~d---~~i~iw~~~~~~~~~~~~--~~~~i----~~~~~sp~~~~la  269 (293)
                      -+..+.|+|++++++... .+   ..+.++|..+++......  ....|    ....|+|+|..++
T Consensus       256 y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~  321 (465)
T d1xfda1         256 YITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFF  321 (465)
T ss_dssp             EEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEE
T ss_pred             eeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeE
Confidence            367789999998766542 22   347889999987654432  22222    3468999998644

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.34  E-value=3.2e-05  Score=60.09  Aligned_cols=92  Identities=17%  Similarity=0.204  Sum_probs=57.8

Q ss_pred             cCC--CCCEEEEEeCCCeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeC-CC-----eEEEEEccccceeeee
Q 022716           75 DPK--HADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNR-DD-----ELTILDVRKFKPIHRR  146 (293)
Q Consensus        75 ~~~--~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~-----~i~l~d~~~~~~~~~~  146 (293)
                      +|+  +..++++.  ++.|.+.|+..++..+.....+.....+|+|||+.|+.... ++     .+.+++..+....+..
T Consensus         7 sPdi~G~~v~f~~--~~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt   84 (281)
T d1k32a2           7 NPDIHGDRIIFVC--CDDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRIT   84 (281)
T ss_dssp             EEEEETTEEEEEE--TTEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECC
T ss_pred             CCCCCCCEEEEEe--CCcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEee
Confidence            455  54444443  35577889998876655455566778899999999886542 21     3666676665544332


Q ss_pred             cc-------cceeeeeEEecCCCEEEEec
Q 022716          147 KF-------GYEVNEIAWNMTGEMFFLTT  168 (293)
Q Consensus       147 ~~-------~~~~~~v~~~~~~~~~~~~~  168 (293)
                      ..       ........|++++..+.+..
T Consensus        85 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~  113 (281)
T d1k32a2          85 YFSGKSTGRRMFTDVAGFDPDGNLIISTD  113 (281)
T ss_dssp             CCCEEEETTEECSEEEEECTTCCEEEEEC
T ss_pred             ecCCCccCccccccccccCCCCCEEEEEE
Confidence            21       12345667888888776643

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.28  E-value=0.0003  Score=55.42  Aligned_cols=191  Identities=13%  Similarity=0.090  Sum_probs=114.2

Q ss_pred             cccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEE-eeCC--cCCeeEEEEcCCCCCEEEEEeC----CCeEE
Q 022716           20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIE-LRGH--ADSVDQLCWDPKHADLIATASG----DKTVR   92 (293)
Q Consensus        20 ~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~-~~~h--~~~i~~~~~~~~~~~~l~s~~~----d~~i~   92 (293)
                      ...+.++++.++|.++++ +.+ -+.++|....   ....+. ....  ...++++.+.|++ .+.++...    .+.-.
T Consensus        58 ~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg---~~~~l~~~~~~~~~~~~nd~~vd~~G-~iw~~~~~~~~~~~~g~  131 (295)
T d2ghsa1          58 PFMGSALAKISDSKQLIA-SDD-GLFLRDTATG---VLTLHAELESDLPGNRSNDGRMHPSG-ALWIGTMGRKAETGAGS  131 (295)
T ss_dssp             SSCEEEEEEEETTEEEEE-ETT-EEEEEETTTC---CEEEEECSSTTCTTEEEEEEEECTTS-CEEEEEEETTCCTTCEE
T ss_pred             CCCcEEEEEecCCCEEEE-EeC-ccEEeecccc---eeeEEeeeecCCCcccceeeEECCCC-CEEEEecccccccccee
Confidence            457888999888876664 444 4777787643   222121 1111  1246788888875 45554432    22345


Q ss_pred             EEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEE-eCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEE--ecC
Q 022716           93 LWDARSGKCSQQAELSGENINITYKPDGTHIAVG-NRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFL--TTG  169 (293)
Q Consensus        93 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~  169 (293)
                      +|.+..++.......-.....++++++++.+... +..+.|..+++........              .....+.  ...
T Consensus       132 l~~~~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~--------------~~~~~~~~~~~~  197 (295)
T d2ghsa1         132 IYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPT--------------GKAEVFIDSTGI  197 (295)
T ss_dssp             EEEEETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBS--------------SCCEEEEECTTS
T ss_pred             EeeecCCcEEEEeeccCCcceeeecCCCceEEEeecccceeeEeeecccccccc--------------cceEEEeccCcc
Confidence            6666566544433333445678999999876555 4567888887643211100              0000111  112


Q ss_pred             CCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEc-cCCCEE-EEec
Q 022716          170 NAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFS-HTGDYI-ASAS  231 (293)
Q Consensus       170 ~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s-p~~~~l-~s~s  231 (293)
                      ......++++.+|++.++.-..+.|..||. .++.+..+.-....+++++|- |+.+.| +|.+
T Consensus       198 ~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~FGG~d~~~LyvTta  260 (295)
T d2ghsa1         198 KGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSA  260 (295)
T ss_dssp             SSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred             cccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCCCCceEEEEEeCCCCCEEEEEEC
Confidence            234567888999998888777889999995 577777776555678999996 666544 4433

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=0.00025  Score=59.79  Aligned_cols=101  Identities=12%  Similarity=0.106  Sum_probs=62.5

Q ss_pred             cEEEEEECCCCCeEEEEe---------CCCcEEEeecCCCCCCceeEEE-eeCCcCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716           22 KVHSVAWNCTGTKLASGS---------VDQTARVWHIEPHGHGKVKDIE-LRGHADSVDQLCWDPKHADLIATASGDKTV   91 (293)
Q Consensus        22 ~v~~l~~s~~~~~l~s~~---------~dg~v~iw~~~~~~~~~~~~~~-~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i   91 (293)
                      .+....||||+++++.+.         ..+...++|+.....   ..+. .......+....|+|++..+.+..  ++.+
T Consensus        62 ~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~---~~l~~~~~~~~~l~~~~wSPDG~~iafv~--~~nl  136 (465)
T d1xfda1          62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP---QSLDPPEVSNAKLQYAGWGPKGQQLIFIF--ENNI  136 (465)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC---EECCCTTCCSCCCSBCCBCSSTTCEEEEE--TTEE
T ss_pred             ccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCce---eeccCccCCccccceeeeccCCceEEEEe--cceE
Confidence            567788999999987763         356778888875321   1111 112233455678999876654433  5667


Q ss_pred             EEEeCCCCeeeeeeeec-------------------CceEEEEEcCCCCEEEEEe
Q 022716           92 RLWDARSGKCSQQAELS-------------------GENINITYKPDGTHIAVGN  127 (293)
Q Consensus        92 ~vwd~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~l~~~~  127 (293)
                      .+.+...+...+.....                   +....+-|+|||++|+...
T Consensus       137 ~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~  191 (465)
T d1xfda1         137 YYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAA  191 (465)
T ss_dssp             EEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEE
T ss_pred             EEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEE
Confidence            78777665443322111                   1123577999999999865

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.98  E-value=0.0019  Score=50.07  Aligned_cols=156  Identities=9%  Similarity=0.046  Sum_probs=101.0

Q ss_pred             cCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeeee---cCceEEEEEcCCCCEEEEEeCCCeEEEEEccccce
Q 022716           66 ADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAEL---SGENINITYKPDGTHIAVGNRDDELTILDVRKFKP  142 (293)
Q Consensus        66 ~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~  142 (293)
                      ......++..+.+ .++++....+.+.+++.. ++.+..+..   ...+..+++.+++..+++....+.|.++|.... .
T Consensus       113 ~~~p~~~avd~~G-~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G~-~  189 (279)
T d1q7fa_         113 LQHPRGVTVDNKG-RIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQ-Y  189 (279)
T ss_dssp             CSCEEEEEECTTS-CEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCC-E
T ss_pred             ccccceeccccCC-cEEEEeeccceeeEeccC-CceeecccccccccccceeeeccceeEEeeeccccceeeeecCCc-e
Confidence            3445677777654 566666667778888754 344443322   234557888888888888777888888886432 1


Q ss_pred             eeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecC-CCcEEEEeCCCCEEEEEeeccC--CCeeEEE
Q 022716          143 IHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSA-DSLVSLWDISEMLCVRTFTKLE--WPVRTIS  219 (293)
Q Consensus       143 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~-d~~i~iwd~~~~~~~~~~~~~~--~~v~~l~  219 (293)
                      +....           ..       ........++++++|+++++-.. +..|.+|+. +++.+.++....  .....|+
T Consensus       190 ~~~~g-----------~~-------g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~va  250 (279)
T d1q7fa_         190 LRQIG-----------GE-------GITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVA  250 (279)
T ss_dssp             EEEES-----------CT-------TTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEE
T ss_pred             eeeec-----------cc-------ccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCCCCCCCEeEEE
Confidence            11110           00       01223567899999998877544 457999984 566666654322  3578899


Q ss_pred             EccCCCEEEEecCCCcEEEEEcCCC
Q 022716          220 FSHTGDYIASASEDLFIDISNVHTG  244 (293)
Q Consensus       220 ~sp~~~~l~s~s~d~~i~iw~~~~~  244 (293)
                      +.|+|+++++ +.+..|++|.....
T Consensus       251 v~~dG~l~V~-~~n~~v~~fr~~~~  274 (279)
T d1q7fa_         251 LMDDGSVVLA-SKDYRLYIYRYVQL  274 (279)
T ss_dssp             EETTTEEEEE-ETTTEEEEEECSCC
T ss_pred             EeCCCcEEEE-eCCCeEEEEEeeee
Confidence            9999986655 56888999987654

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.73  E-value=0.0076  Score=49.08  Aligned_cols=153  Identities=10%  Similarity=0.107  Sum_probs=92.8

Q ss_pred             EEEEc---CCCCEEEEEe-CCCeEEEEEccccceeeeecc--cceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEE
Q 022716          113 NITYK---PDGTHIAVGN-RDDELTILDVRKFKPIHRRKF--GYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFA  186 (293)
Q Consensus       113 ~~~~~---~~~~~l~~~~-~d~~i~l~d~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  186 (293)
                      .+.+.   +||+++++.. .+++|...|++.++..+....  ......+.-.+                   .|.-.+++
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~-------------------~p~T~YV~  149 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQK-------------------WPRSNYVF  149 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECC-------------------SSBCSEEE
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeeccc-------------------CCCeEEEE
Confidence            45554   4899988877 478999999998876553322  12222222111                   12223333


Q ss_pred             EecCC------------------CcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCC--------------
Q 022716          187 VGSAD------------------SLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDL--------------  234 (293)
Q Consensus       187 ~gs~d------------------~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~--------------  234 (293)
                      .++.+                  +.+..+|..+++...++.- ......++++|+|+++++.+.+.              
T Consensus       150 ~~~e~~vP~pndg~~l~d~~~y~~~~t~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~  228 (459)
T d1fwxa2         150 CNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEM  228 (459)
T ss_dssp             EEECSCEESSCSSSSTTCGG-EEEEEEEEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSE
T ss_pred             ccCccccccCCCCccccchhhcceEEEEEecCCceEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccc
Confidence            33321                  2356789888877665542 34567899999999987765331              


Q ss_pred             ------------------------cEEEEEcCCC---CEEEEEecCCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEE
Q 022716          235 ------------------------FIDISNVHTG---RTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRI  287 (293)
Q Consensus       235 ------------------------~i~iw~~~~~---~~~~~~~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~  287 (293)
                                              -+.+-|..+.   ..++.++...+...+..+|||+++..++.-       ..++-|
T Consensus       229 D~i~V~n~~rie~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKL-------s~tVSV  301 (459)
T d1fwxa2         229 DHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKL-------SPTVTV  301 (459)
T ss_dssp             EEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTT-------SSBEEE
T ss_pred             eEEEEechHHhHHhhhcCCcEEeCCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCc-------CCcEEE
Confidence                                    1234443321   123344444556789999999999998854       256778


Q ss_pred             Eeeec
Q 022716          288 YGFEN  292 (293)
Q Consensus       288 ~~~~~  292 (293)
                      ++++|
T Consensus       302 iD~~K  306 (459)
T d1fwxa2         302 LDVTR  306 (459)
T ss_dssp             EEGGG
T ss_pred             EEehh
Confidence            88765

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.66  E-value=0.0097  Score=48.45  Aligned_cols=241  Identities=11%  Similarity=0.048  Sum_probs=129.6

Q ss_pred             CCCCeEEEEe-CCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCC-CCEEEEEeCCC------------------
Q 022716           30 CTGTKLASGS-VDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKH-ADLIATASGDK------------------   89 (293)
Q Consensus        30 ~~~~~l~s~~-~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~-~~~l~s~~~d~------------------   89 (293)
                      +||++|.... .+..|-+-|++.....+  .+..+ ....+..+...+.. ..+++.++.+.                  
T Consensus        97 yDGrylFVNDkan~RVAvIdl~~fkt~k--Ii~iP-n~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~  173 (459)
T d1fwxa2          97 YDGRFLFMNDKANTRVARVRCDVMKCDA--ILEIP-NAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVN  173 (459)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEE--EEECS-SCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEE
T ss_pred             cceeEEEEEcCCCceEEEEECcceeeeE--EEecC-CCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcce
Confidence            4888887655 57888888887543211  12222 22334444443322 34565555532                  


Q ss_pred             eEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCC--e-------------EEEEEccccceeeeecccceeee
Q 022716           90 TVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDD--E-------------LTILDVRKFKPIHRRKFGYEVNE  154 (293)
Q Consensus        90 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~--~-------------i~l~d~~~~~~~~~~~~~~~~~~  154 (293)
                      .+.+.|..+.+........+....+.++|+|+++++.+.+.  .             +.+++...........-...++.
T Consensus       174 ~~t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eing  253 (459)
T d1fwxa2         174 VFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNG  253 (459)
T ss_dssp             EEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETT
T ss_pred             EEEEEecCCceEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCC
Confidence            35677888877776667777777899999999999877432  1             22233211100000000001111


Q ss_pred             e-EEecC----CCEEEEecCCCCEEEEEECCCCCEEEEe-cCCCcEEEEeCCCCEE-----------EEEeeccCCCeeE
Q 022716          155 I-AWNMT----GEMFFLTTGNAGCYCIAIDPMGRYFAVG-SADSLVSLWDISEMLC-----------VRTFTKLEWPVRT  217 (293)
Q Consensus       155 v-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~g-s~d~~i~iwd~~~~~~-----------~~~~~~~~~~v~~  217 (293)
                      + +.+..    ........-.....-+.++|||++++++ -.+.++-++|+++...           +..-....-....
T Consensus       254 V~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLh  333 (459)
T d1fwxa2         254 VKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLH  333 (459)
T ss_dssp             EEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEE
T ss_pred             ceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCccc
Confidence            1 11111    0111111111122347889999987665 4589999999864211           1111123334667


Q ss_pred             EEEccCCCEEEEecCCCcEEEEEcCCC----------CEEEEEecCCCc------ceeEECCCCCeEEEEEc
Q 022716          218 ISFSHTGDYIASASEDLFIDISNVHTG----------RTVHQIPCRAAM------NSVEWNPKYNLLAYAGD  273 (293)
Q Consensus       218 l~~sp~~~~l~s~s~d~~i~iw~~~~~----------~~~~~~~~~~~i------~~~~~sp~~~~la~~~~  273 (293)
                      .+|...|..-.|---|..|--|++...          ..+.+++-+-.+      ..-.-.|+|++|++...
T Consensus       334 t~fd~~g~aytslfids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~~gh~~~~~g~t~~~dgk~l~~~nk  405 (459)
T d1fwxa2         334 TAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK  405 (459)
T ss_dssp             EEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred             cccCCCceEEEEeeccceEEEEecchhhhhhccccCCcceeccccccCCCCCccCcCCcCCCCCCEEEEecc
Confidence            789888865566678999999998422          233333321111      11134689999988863

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.38  E-value=0.015  Score=46.71  Aligned_cols=252  Identities=8%  Similarity=0.004  Sum_probs=120.3

Q ss_pred             EEEEEECCCCCeEEEEeCC-CcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCC------CeEEEEe
Q 022716           23 VHSVAWNCTGTKLASGSVD-QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD------KTVRLWD   95 (293)
Q Consensus        23 v~~l~~s~~~~~l~s~~~d-g~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d------~~i~vwd   95 (293)
                      ....++.++|+.++.|+.+ ..+.+||..........  ....... -...+..++ +.+++.++.+      ..+.+||
T Consensus        78 ~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~--~~~~~r~-~~~~~~~~d-G~v~v~GG~~~~~~~~~~v~~yd  153 (387)
T d1k3ia3          78 CPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGP--DMQVARG-YQSSATMSD-GRVFTIGGSWSGGVFEKNGEVYS  153 (387)
T ss_dssp             SCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECC--CCSSCCS-SCEEEECTT-SCEEEECCCCCSSSCCCCEEEEE
T ss_pred             eeEEEEecCCcEEEeecCCCcceeEecCccCcccccc--ccccccc-ccceeeecC-Cceeeeccccccccccceeeeec
Confidence            3456788999999988765 68999998643211100  0111111 123344444 4577666642      3588999


Q ss_pred             CCCCeeeeeeeecC---------------ceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecC
Q 022716           96 ARSGKCSQQAELSG---------------ENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMT  160 (293)
Q Consensus        96 ~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~  160 (293)
                      ..+.+....-....               ....+...++|+.++.+..++.+..+|..+......          .+.+.
T Consensus       154 ~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~----------~~~~~  223 (387)
T d1k3ia3         154 PSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSA----------GKRQS  223 (387)
T ss_dssp             TTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEE----------EECEE
T ss_pred             CCCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeec----------ccccc
Confidence            88775432111000               011122345666666666666666666554332111          11111


Q ss_pred             CCEEEEecCCCCEEEEEECCCCCEEEEecCCC--------cEEEEeCC---CC-EEEEEeecc--CCCeeEEEEccCCCE
Q 022716          161 GEMFFLTTGNAGCYCIAIDPMGRYFAVGSADS--------LVSLWDIS---EM-LCVRTFTKL--EWPVRTISFSHTGDY  226 (293)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~--------~i~iwd~~---~~-~~~~~~~~~--~~~v~~l~~sp~~~~  226 (293)
                      ..... .........+....+++.++.|+...        ...+.+..   .. .........  ...-.+....|+|+.
T Consensus       224 ~~~~~-~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i  302 (387)
T d1k3ia3         224 NRGVA-PDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGST  302 (387)
T ss_dssp             TTEEC-CCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCE
T ss_pred             CcccC-cccccccEEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeeccccccccccceeeeccCCeE
Confidence            11100 00001111122234566666665321        23333322   11 111111111  111234455689999


Q ss_pred             EEEecCC-----------CcEEEEEcCCCCEEE--EEecCCCcce-eEECCCCCeEEEEEcCCCCCCCCcceEEEEe
Q 022716          227 IASASED-----------LFIDISNVHTGRTVH--QIPCRAAMNS-VEWNPKYNLLAYAGDDKNKYQADEGVFRIYG  289 (293)
Q Consensus       227 l~s~s~d-----------~~i~iw~~~~~~~~~--~~~~~~~i~~-~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~  289 (293)
                      ++.|+.+           ..+.+||.++.+-..  .++....-.+ ....|||+.|+.||...+-....+..+.||+
T Consensus       303 ~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~~~~~~~R~~Hs~a~l~~dG~v~v~GG~~~~~~~~~~~~~e~y~  379 (387)
T d1k3ia3         303 FITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCGDCTTNHFDAQIFT  379 (387)
T ss_dssp             EEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECCCCTTCSCCCCEEEEEE
T ss_pred             EEECCcccCccCCCCcEeceEEEEECCCCeEEECCCCCCcccceEEEEECCCCEEEEEeCCCcCCCCcccceEEEEc
Confidence            9998843           146789987764221  1221111123 4468999999999964333333344566664

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.66  E-value=0.083  Score=40.11  Aligned_cols=207  Identities=7%  Similarity=-0.005  Sum_probs=122.1

Q ss_pred             CccccEEEEEECCCCCeEEEE-eCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeC
Q 022716           18 GHKKKVHSVAWNCTGTKLASG-SVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDA   96 (293)
Q Consensus        18 ~h~~~v~~l~~s~~~~~l~s~-~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~   96 (293)
                      .+...+..++|.+..++|.-+ ..++.|+..+++...  . .. .+..-...+..+++...+..+.++-...+.|.+.++
T Consensus        33 ~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~--~-~~-v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~  108 (263)
T d1npea_          33 IPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE--P-TT-IIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKM  108 (263)
T ss_dssp             EEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCC--C-EE-EECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             cCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCC--c-EE-EEEeccccccEEEEeccCCeEEEeccCCCEEEEEec
Confidence            344568889999888777654 456778877776322  1 11 122223456777776555555566666789999998


Q ss_pred             CCCeeeeeeee-cCceEEEEEcCCCCEEEEEeCC-C--eEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCC
Q 022716           97 RSGKCSQQAEL-SGENINITYKPDGTHIAVGNRD-D--ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAG  172 (293)
Q Consensus        97 ~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d-~--~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  172 (293)
                      ....+...... -..+..++..|...++...... +  .|.-.++.....                    .......-..
T Consensus       109 dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~--------------------~~i~~~~~~~  168 (263)
T d1npea_         109 DGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR--------------------RILAQDNLGL  168 (263)
T ss_dssp             TSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC--------------------EEEECTTCSC
T ss_pred             CCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCc--------------------eeeeeecccc
Confidence            76544322222 2456788888876666544322 2  233333332211                    1122222344


Q ss_pred             EEEEEECCCCCEE-EEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEE
Q 022716          173 CYCIAIDPMGRYF-AVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQI  250 (293)
Q Consensus       173 ~~~~~~~~~~~~l-~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~  250 (293)
                      ...+++++.++.| .+-...+.|...++........+.+.. ...+|++. ++....+-...+.|...|..+++.++.+
T Consensus       169 P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~-~P~~lav~-~~~lYwtd~~~~~I~~~~~~~g~~~~~~  245 (263)
T d1npea_         169 PNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQ-YPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTF  245 (263)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCC-SEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             cceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCC-CcEEEEEE-CCEEEEEECCCCEEEEEECCCCccceEE
Confidence            5678888776655 444567889999987654443344433 34577764 3444455557788888898888877655

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.34  E-value=0.17  Score=40.14  Aligned_cols=262  Identities=10%  Similarity=0.021  Sum_probs=131.0

Q ss_pred             cEEEEEECCCCCeEEEEeCCC-----------cEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCC-C
Q 022716           22 KVHSVAWNCTGTKLASGSVDQ-----------TARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD-K   89 (293)
Q Consensus        22 ~v~~l~~s~~~~~l~s~~~dg-----------~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d-~   89 (293)
                      ++.......+|+.++.|+.+.           .+.+||...+........ ...|........+.++ +.+++.|+.+ .
T Consensus        21 ~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~-~~~~~~~~~~~~~~~~-g~i~v~Gg~~~~   98 (387)
T d1k3ia3          21 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVT-VTKHDMFCPGISMDGN-GQIVVTGGNDAK   98 (387)
T ss_dssp             CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEE-ECSCCCSSCEEEECTT-SCEEEECSSSTT
T ss_pred             ccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCC-CCCcccceeEEEEecC-CcEEEeecCCCc
Confidence            334445567888888888532           367899876544332222 2233333445566665 4677776654 5


Q ss_pred             eEEEEeCCCCeeeeeeeec--CceEEEEEcCCCCEEEEEeCC------CeEEEEEccccceeeeecccceeeeeEEecCC
Q 022716           90 TVRLWDARSGKCSQQAELS--GENINITYKPDGTHIAVGNRD------DELTILDVRKFKPIHRRKFGYEVNEIAWNMTG  161 (293)
Q Consensus        90 ~i~vwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~d------~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~  161 (293)
                      .+.+||..+......-...  .....++..+||+.++.|+.+      ..+.+||+.+.+-........... ...  ..
T Consensus        99 ~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~-~~~--~~  175 (387)
T d1k3ia3          99 KTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPM-LTA--DK  175 (387)
T ss_dssp             CEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGG-CCC--CT
T ss_pred             ceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCccccc-ccc--cc
Confidence            7999998877654322211  112356777899999988753      357788877654221110000000 000  00


Q ss_pred             CEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEe--ecc----C--CCeeEEEE-ccCCCEEEEecC
Q 022716          162 EMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF--TKL----E--WPVRTISF-SHTGDYIASASE  232 (293)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~--~~~----~--~~v~~l~~-sp~~~~l~s~s~  232 (293)
                      ..  ....... ..+...++++.++.+..++.+.+++..+.......  ...    .  ..-.++.+ ..+++.++.|+.
T Consensus       176 ~~--~~~~~~~-~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~  252 (387)
T d1k3ia3         176 QG--LYRSDNH-AWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGS  252 (387)
T ss_dssp             TG--GGTTTCS-CCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCB
T ss_pred             cc--eeeccce-eEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEEEeeccCCceEEEEec
Confidence            00  0000000 11233467788888888888888888776433211  111    0  01122333 245677777763


Q ss_pred             CC--------cEEEEEcCCC---CEEEEE----ecCCCcceeEECCCCCeEEEEEcCCCCCCCCc---ceEEEEeee
Q 022716          233 DL--------FIDISNVHTG---RTVHQI----PCRAAMNSVEWNPKYNLLAYAGDDKNKYQADE---GVFRIYGFE  291 (293)
Q Consensus       233 d~--------~i~iw~~~~~---~~~~~~----~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~---~~~~~~~~~  291 (293)
                      ..        ...+.+....   ......    +....-.+....|++.+++.||.+......+.   ..+.+|+.+
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~  329 (387)
T d1k3ia3         253 PDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPE  329 (387)
T ss_dssp             SSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGG
T ss_pred             cCCCCCcccceeecccccccccCCCceeeccccccccccceeeeccCCeEEEECCcccCccCCCCcEeceEEEEECC
Confidence            21        2233333221   111111    11111234556689999999997643322221   234566654

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.31  E-value=0.15  Score=39.18  Aligned_cols=113  Identities=12%  Similarity=0.158  Sum_probs=72.7

Q ss_pred             EEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCC-CEEEEEecCC
Q 022716          176 IAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTG-RTVHQIPCRA  254 (293)
Q Consensus       176 ~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~-~~~~~~~~~~  254 (293)
                      .-++|..+.+|.-+ ..++.+||+++..+++.+.- ..+|.-=.|-.+. .|+... +..|+=|++... ...+.+.-+.
T Consensus        68 AIMhP~~~IiALra-g~~LQiFnletK~klks~~~-~e~VvfWkWis~~-~L~lVT-~taVYHW~~~g~s~P~k~fdR~~  143 (327)
T d1utca2          68 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHS  143 (327)
T ss_dssp             EEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC-SSCCCEEEESSSS-EEEEEC-SSEEEEEESSSSCCCEEEEECCG
T ss_pred             hhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEc-CCCcEEEEecCCC-EEEEEc-CCceEEEcccCCCCchhhhhhcc
Confidence            45678888887776 55899999999988887643 3477666775444 333332 345899998543 2344343222


Q ss_pred             -----CcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeeecC
Q 022716          255 -----AMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFENA  293 (293)
Q Consensus       255 -----~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~~~  293 (293)
                           .|..-.-+++++.++..|-...- ..-.|.|++|++|+.
T Consensus       144 ~L~~~QIInY~~d~~~kW~~l~GI~~~~-~~i~G~mQLYS~er~  186 (327)
T d1utca2         144 SLAGCQIINYRTDAKQKWLLLTGISAQQ-NRVVGAMQLYSVDRK  186 (327)
T ss_dssp             GGTTCEEEEEEECTTSCEEEEEEEEEET-TEEEEEEEEEETTTT
T ss_pred             cccCceEEEEEECCCCCEEEEEeEecCC-CceeEEEEEEEeccC
Confidence                 24455668888888777743211 123499999999973

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.16  E-value=0.17  Score=38.30  Aligned_cols=190  Identities=11%  Similarity=-0.005  Sum_probs=103.2

Q ss_pred             eEEEEeCCCcEEEeecCCCCCCce-eEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeeee-cCce
Q 022716           34 KLASGSVDQTARVWHIEPHGHGKV-KDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAEL-SGEN  111 (293)
Q Consensus        34 ~l~s~~~dg~v~iw~~~~~~~~~~-~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~-~~~~  111 (293)
                      +|+-+.. +.|+-.+++....... ....+..+...+..++|.+....++.+-..++.|...++..+........ -..+
T Consensus         3 fLl~s~~-~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p   81 (263)
T d1npea_           3 HLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSP   81 (263)
T ss_dssp             EEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCE
T ss_pred             EEEEeCC-CeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccc
Confidence            4443332 4666666654322211 11123333445778888876555666556678888888876543333222 2456


Q ss_pred             EEEEEcCCCCEEE-EEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecC
Q 022716          112 INITYKPDGTHIA-VGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSA  190 (293)
Q Consensus       112 ~~~~~~~~~~~l~-~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~  190 (293)
                      ..+++..-+..|. +-...+.|...++.......                    .+......+..++++|...++.....
T Consensus        82 ~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~--------------------l~~~~l~~p~~l~vdp~~g~ly~t~~  141 (263)
T d1npea_          82 EGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV--------------------LFDTGLVNPRGIVTDPVRGNLYWTDW  141 (263)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE--------------------EECSSCSSEEEEEEETTTTEEEEEEC
T ss_pred             cEEEEeccCCeEEEeccCCCEEEEEecCCceEEE--------------------EecccccCCcEEEEecccCcEEEeec
Confidence            7888876555554 44456788887775432111                    11122234567778877665543322


Q ss_pred             -CCc--EEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEE-EEecCCCcEEEEEcCCC
Q 022716          191 -DSL--VSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYI-ASASEDLFIDISNVHTG  244 (293)
Q Consensus       191 -d~~--i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l-~s~s~d~~i~iw~~~~~  244 (293)
                       .+.  |.-.++............-.....|++.+.++.| .+-...+.|...+....
T Consensus       142 ~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~  199 (263)
T d1npea_         142 NRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP  199 (263)
T ss_dssp             CSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE
T ss_pred             CCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCC
Confidence             223  4334554332222222222456889998887766 44456778888888543

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=95.96  E-value=0.36  Score=40.91  Aligned_cols=80  Identities=9%  Similarity=0.074  Sum_probs=52.9

Q ss_pred             CcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEecCCCcce--eEECCCCC-eE
Q 022716          192 SLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNS--VEWNPKYN-LL  268 (293)
Q Consensus       192 ~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~i~~--~~~sp~~~-~l  268 (293)
                      |.|.-+|+++++.+=+... ..+..+=..+..+.+++.|+.|+.++-+|.++|+.+-.+.....+.+  +.|..+|+ |+
T Consensus       444 G~l~AiD~~TG~~~W~~~~-~~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqYi  522 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWE-KFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYI  522 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             ccEEEeccCCCceeeEcCC-CCCCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEEEE
Confidence            4677788887765533321 11111111223566788899999999999999999988876665554  78877885 55


Q ss_pred             EEEE
Q 022716          269 AYAG  272 (293)
Q Consensus       269 a~~~  272 (293)
                      |+..
T Consensus       523 ~v~~  526 (571)
T d2ad6a1         523 GSMY  526 (571)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            5543

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=95.94  E-value=0.4  Score=40.68  Aligned_cols=58  Identities=19%  Similarity=0.036  Sum_probs=35.5

Q ss_pred             CcEEEEEcCCCCEEEEEecCCCcceeEECCCCCeEEEEEcCCCCCCCCcceE-EEEeee
Q 022716          234 LFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVF-RIYGFE  291 (293)
Q Consensus       234 ~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~-~~~~~~  291 (293)
                      |.|.-+|..+|+.+-+.....+..+=..+..+.++.+|+.|+.++-.|..+- .||+++
T Consensus       444 G~l~AiD~~TG~~~W~~~~~~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~  502 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFK  502 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             ccEEEeccCCCceeeEcCCCCCCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEE
Confidence            4566778888887766654444333223334667777888877666555554 566654

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.80  E-value=0.25  Score=37.31  Aligned_cols=212  Identities=12%  Similarity=0.001  Sum_probs=116.0

Q ss_pred             ccccEEEEEECCCCCeEEEEe-CCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCC
Q 022716           19 HKKKVHSVAWNCTGTKLASGS-VDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDAR   97 (293)
Q Consensus        19 h~~~v~~l~~s~~~~~l~s~~-~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~   97 (293)
                      ....+..++|++..+.|.-+. .++.|+.-+++..................+..+++.+.+..+.++-...+.|.+.++.
T Consensus        28 ~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~  107 (266)
T d1ijqa1          28 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  107 (266)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecC
Confidence            445678899998887776544 4566666555432111111111222234456677766656677776778899999987


Q ss_pred             CCeeeeeeee-cCceEEEEEcCCCCEEEEEeC--CCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEE
Q 022716           98 SGKCSQQAEL-SGENINITYKPDGTHIAVGNR--DDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCY  174 (293)
Q Consensus        98 ~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~--d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  174 (293)
                      .......... ...+..++..|...++.....  .+.|.-.++......                    .++...-..+.
T Consensus       108 g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~--------------------~l~~~~~~~p~  167 (266)
T d1ijqa1         108 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY--------------------SLVTENIQWPN  167 (266)
T ss_dssp             SSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE--------------------EEECSSCSCEE
T ss_pred             CceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCcee--------------------cccccccceee
Confidence            6654333332 345778888886555544332  234444444332211                    11112223456


Q ss_pred             EEEECCCCCE-EEEecCCCcEEEEeCCCCEEEEEeecc--CCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEe
Q 022716          175 CIAIDPMGRY-FAVGSADSLVSLWDISEMLCVRTFTKL--EWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP  251 (293)
Q Consensus       175 ~~~~~~~~~~-l~~gs~d~~i~iwd~~~~~~~~~~~~~--~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~  251 (293)
                      .+++++.++. ..+-...+.|...++....+.......  .....+|++. .+....+-..++.|+..+..++.....+.
T Consensus       168 gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~-~~~ly~td~~~~~I~~~~~~~g~~~~~~~  246 (266)
T d1ijqa1         168 GITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA  246 (266)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred             EEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE-CCEEEEEECCCCeEEEEECCCCcceEEEE
Confidence            7788876654 444466778888888654322222222  2345567765 34444555577888888877776554443

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=95.21  E-value=0.73  Score=38.83  Aligned_cols=80  Identities=9%  Similarity=0.116  Sum_probs=55.4

Q ss_pred             CcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEecCCCcce--eEECCCCC-eE
Q 022716          192 SLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNS--VEWNPKYN-LL  268 (293)
Q Consensus       192 ~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~i~~--~~~sp~~~-~l  268 (293)
                      |.|.-+|+.+++.+=+... ..+..+-..+-.+.+++.|+.|+.++-+|..+|+++-.+.....+..  +.+.-+|+ |+
T Consensus       438 G~l~A~D~~tGk~~W~~~~-~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqyv  516 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPY-PTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYV  516 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             cceEEEeCCCCeEeeeccC-CCCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEE
Confidence            5688889998876644322 22322222344577888899999999999999999988876655543  67777885 55


Q ss_pred             EEEE
Q 022716          269 AYAG  272 (293)
Q Consensus       269 a~~~  272 (293)
                      ++.+
T Consensus       517 ~v~a  520 (560)
T d1kv9a2         517 AIMA  520 (560)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            5544

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=94.81  E-value=0.29  Score=40.14  Aligned_cols=33  Identities=6%  Similarity=0.074  Sum_probs=26.4

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCeEEEEEccccc
Q 022716          109 GENINITYKPDGTHIAVGNRDDELTILDVRKFK  141 (293)
Q Consensus       109 ~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~  141 (293)
                      ..+..|+|.|||+.+++--.+|+|++++..+..
T Consensus        27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~   59 (450)
T d1crua_          27 NKPHALLWGPDNQIWLTERATGKILRVNPESGS   59 (450)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCC
T ss_pred             CCceEEEEeCCCeEEEEEecCCEEEEEECCCCc
Confidence            467799999999988776567999999876654

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=94.79  E-value=0.68  Score=36.29  Aligned_cols=85  Identities=12%  Similarity=0.022  Sum_probs=50.2

Q ss_pred             CCCcEEEEeCCC--CE--EEEEeecc-CCCeeEEEEccCCCEEEEecC---------------CCcEEEEEcCCCCEEEE
Q 022716          190 ADSLVSLWDISE--ML--CVRTFTKL-EWPVRTISFSHTGDYIASASE---------------DLFIDISNVHTGRTVHQ  249 (293)
Q Consensus       190 ~d~~i~iwd~~~--~~--~~~~~~~~-~~~v~~l~~sp~~~~l~s~s~---------------d~~i~iw~~~~~~~~~~  249 (293)
                      ...+|.+|++..  .+  .+.++... ....+.|.+..++.+.+|-..               -....+|....+.....
T Consensus       122 ~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~~~  201 (340)
T d1v04a_         122 SSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVV  201 (340)
T ss_dssp             TCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEEEE
T ss_pred             CCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceEEE
Confidence            456788888642  22  22233222 245789999999999998421               12334444444433222


Q ss_pred             EecCCCcceeEECCCCCeEEEEEcC
Q 022716          250 IPCRAAMNSVEWNPKYNLLAYAGDD  274 (293)
Q Consensus       250 ~~~~~~i~~~~~sp~~~~la~~~~d  274 (293)
                      ...-..-|.|+++|++++|..+...
T Consensus       202 ~~~l~~pNGI~~s~d~~~lyVa~t~  226 (340)
T d1v04a_         202 AEGFDFANGINISPDGKYVYIAELL  226 (340)
T ss_dssp             EEEESSEEEEEECTTSSEEEEEEGG
T ss_pred             cCCCCccceeEECCCCCEEEEEeCC
Confidence            2223346889999999988777653

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=94.63  E-value=1.1  Score=37.86  Aligned_cols=81  Identities=11%  Similarity=0.146  Sum_probs=54.9

Q ss_pred             CcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEecCCCcce--eEECCCCC-eE
Q 022716          192 SLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNS--VEWNPKYN-LL  268 (293)
Q Consensus       192 ~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~i~~--~~~sp~~~-~l  268 (293)
                      |.+.-||+.+++.+=+.... .+...=..+..|.+++.|+.|+.++.+|..+|+++-.+.....+..  +.|.-+|+ |+
T Consensus       457 G~l~AiD~~tGk~~W~~~~~-~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQYv  535 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHV-SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYV  535 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             ccEEEeCCCCCceEeeecCC-CCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEE
Confidence            45777888888765443322 1222112334677888899999999999999999988877665544  67777885 45


Q ss_pred             EEEEc
Q 022716          269 AYAGD  273 (293)
Q Consensus       269 a~~~~  273 (293)
                      +..+.
T Consensus       536 ~v~~G  540 (573)
T d1kb0a2         536 SVAVG  540 (573)
T ss_dssp             EEEEC
T ss_pred             EEEeC
Confidence            55443

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.57  E-value=0.3  Score=41.57  Aligned_cols=81  Identities=11%  Similarity=0.200  Sum_probs=57.5

Q ss_pred             CCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEecCCCcce--eEECCCCC-e
Q 022716          191 DSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNS--VEWNPKYN-L  267 (293)
Q Consensus       191 d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~i~~--~~~sp~~~-~  267 (293)
                      .|.|.-+|+.+++.+=+.... .++.+-..+..|..++.|+.|+.++-+|.++|+++-.+.....+..  +.|..+|+ |
T Consensus       465 ~G~l~AiD~~TG~i~W~~~~~-~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qY  543 (582)
T d1flga_         465 VGSLRAMDPVSGKVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQY  543 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             CCeEEEEcCCCCcEEeecCCC-CCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEE
Confidence            467888899888766554332 2333222345677888899999999999999999988876655543  78888885 5


Q ss_pred             EEEEE
Q 022716          268 LAYAG  272 (293)
Q Consensus       268 la~~~  272 (293)
                      +|...
T Consensus       544 v~i~a  548 (582)
T d1flga_         544 LGVTV  548 (582)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            55543

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=94.48  E-value=0.58  Score=39.86  Aligned_cols=80  Identities=10%  Similarity=0.081  Sum_probs=54.7

Q ss_pred             CcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEecCCCcce--eEECCCCC-eE
Q 022716          192 SLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNS--VEWNPKYN-LL  268 (293)
Q Consensus       192 ~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~i~~--~~~sp~~~-~l  268 (293)
                      |.|.-||+.+++.+=+.. +..+..+=..+..|.+++.|+.|+.++-+|..+|+++-.+.....+.+  +.|.-+|+ |+
T Consensus       453 G~l~A~D~~TG~~~W~~~-~~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGkQYv  531 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKM-ERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYV  531 (596)
T ss_dssp             EEEEEECTTTCCEEEEEE-ESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             ceEEEEeCCCCceecccC-CCCCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCCeEEEECCEEEE
Confidence            568888888886553322 222222222334677888899999999999999999988877665543  77777885 45


Q ss_pred             EEEE
Q 022716          269 AYAG  272 (293)
Q Consensus       269 a~~~  272 (293)
                      |...
T Consensus       532 av~~  535 (596)
T d1w6sa_         532 AIYY  535 (596)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            5543

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=92.15  E-value=2.8  Score=35.06  Aligned_cols=58  Identities=10%  Similarity=0.014  Sum_probs=37.4

Q ss_pred             CcEEEEEcCCCCEEEEEecCCCcceeEECCCCCeEEEEEcCCCCCCCCcceE-EEEeee
Q 022716          234 LFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVF-RIYGFE  291 (293)
Q Consensus       234 ~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~-~~~~~~  291 (293)
                      +.+.-+|..+++.+-+.+...+...-.....+.++.+|+.|+.++-.|..+- .||+++
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~  496 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFE  496 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             cceEEEeCCCCeEeeeccCCCCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEE
Confidence            4577789999988877776655554444555667777777766555555444 445544

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=92.14  E-value=2  Score=33.41  Aligned_cols=59  Identities=15%  Similarity=0.158  Sum_probs=39.2

Q ss_pred             CCeeEEEEccCCCEEEE-ecCCCcEEEEEcCCCCEE---EEEecCCCcceeEECCC-CCeEEEE
Q 022716          213 WPVRTISFSHTGDYIAS-ASEDLFIDISNVHTGRTV---HQIPCRAAMNSVEWNPK-YNLLAYA  271 (293)
Q Consensus       213 ~~v~~l~~sp~~~~l~s-~s~d~~i~iw~~~~~~~~---~~~~~~~~i~~~~~sp~-~~~la~~  271 (293)
                      ...+.|+++|++++|+. -+..+.|.+|+......+   .........-.+.+.++ +.+.+.+
T Consensus       206 ~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~  269 (340)
T d1v04a_         206 DFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGC  269 (340)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred             CccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEE
Confidence            45799999999987754 456788999988654322   23344455667888764 4444444

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.10  E-value=2.2  Score=33.77  Aligned_cols=97  Identities=12%  Similarity=0.032  Sum_probs=64.5

Q ss_pred             CEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEE---
Q 022716          172 GCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVH---  248 (293)
Q Consensus       172 ~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~---  248 (293)
                      .+..++++.+  .++.. .++.+..++...............++.++..+|.  .++....++.+.++++..++...   
T Consensus        88 ~v~~vafs~d--~l~v~-~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~  162 (381)
T d1xipa_          88 DVIFVCFHGD--QVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQ  162 (381)
T ss_dssp             TEEEEEEETT--EEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             CeEEEEeeCC--EEEEE-eCCCEEEEEeeccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccC
Confidence            3566777533  45444 3456777877654334444445667888887775  45666678889999998876432   


Q ss_pred             ---EEecCCCcceeEECCCCCeEEEEEc
Q 022716          249 ---QIPCRAAMNSVEWNPKYNLLAYAGD  273 (293)
Q Consensus       249 ---~~~~~~~i~~~~~sp~~~~la~~~~  273 (293)
                         .........++.|++.+.+++++..
T Consensus       163 ~v~~~~~~~~~~~v~ws~kgkq~v~~~g  190 (381)
T d1xipa_         163 NVTSFDVTNSQLAVLLKDRSFQSFAWRN  190 (381)
T ss_dssp             SEEEEEECSSEEEEEETTSCEEEEEEET
T ss_pred             CcceEEecCCceEEEEeCCcEEEEEeCC
Confidence               2234567888999999998887753

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=89.69  E-value=5.1  Score=33.72  Aligned_cols=58  Identities=19%  Similarity=0.043  Sum_probs=36.6

Q ss_pred             CcEEEEEcCCCCEEEEEecCCCcceeEECCCCCeEEEEEcCCCCCCCCcceE-EEEeee
Q 022716          234 LFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVF-RIYGFE  291 (293)
Q Consensus       234 ~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~-~~~~~~  291 (293)
                      |.+.=||..+++.+-+.....+...=..+..+.++..|+.|+.++-.|..+- .||+++
T Consensus       453 G~l~A~D~~TG~~~W~~~~~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~  511 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFK  511 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             ceEEEEeCCCCceecccCCCCCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEE
Confidence            4577778888887766655555544444455677777888876665555444 455553

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=88.67  E-value=4.8  Score=32.11  Aligned_cols=116  Identities=16%  Similarity=0.149  Sum_probs=63.3

Q ss_pred             CccccEEEEEECCCCCeEEEE-eCC----CcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeC-----
Q 022716           18 GHKKKVHSVAWNCTGTKLASG-SVD----QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASG-----   87 (293)
Q Consensus        18 ~h~~~v~~l~~s~~~~~l~s~-~~d----g~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~-----   87 (293)
                      ++.-.+...++||+++++|-+ +.+    -.++++|+++.   ......+..  .....+.|.+++..++++.-.     
T Consensus       122 ~~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg---~~~~~~i~~--~~~~~~~W~~D~~~~~Y~~~~~~~~~  196 (430)
T d1qfma1         122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGA---KELPDVLER--VKFSCMAWTHDGKGMFYNAYPQQDGK  196 (430)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTT---EEEEEEEEE--ECSCCEEECTTSSEEEEEECCCCSSC
T ss_pred             cccceecceEecCCCCEEEEEeccccCchheeEEeccCcc---eeccccccc--ccccceEEcCCCCEEEEEEeccccCc
Confidence            344445677889999998743 333    37889999753   222112221  112457888876555555421     


Q ss_pred             ----------CCeEEEEeCCCCeeee--eeeec---CceEEEEEcCCCCEEEEEeC---CC--eEEEEEcc
Q 022716           88 ----------DKTVRLWDARSGKCSQ--QAELS---GENINITYKPDGTHIAVGNR---DD--ELTILDVR  138 (293)
Q Consensus        88 ----------d~~i~vwd~~~~~~~~--~~~~~---~~~~~~~~~~~~~~l~~~~~---d~--~i~l~d~~  138 (293)
                                ...|..+.+.+.....  .++..   .....+..++++++++....   +.  .+.+.|+.
T Consensus       197 ~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~  267 (430)
T d1qfma1         197 SDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQ  267 (430)
T ss_dssp             CSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGG
T ss_pred             ccccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCC
Confidence                      1257777776653221  22211   12345667899998875432   22  34555654

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.47  E-value=4.2  Score=30.09  Aligned_cols=186  Identities=9%  Similarity=-0.020  Sum_probs=99.5

Q ss_pred             eEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeee---eeee--ec
Q 022716           34 KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCS---QQAE--LS  108 (293)
Q Consensus        34 ~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~---~~~~--~~  108 (293)
                      +|+.+.. ..|+..+++....   .  .+......+.++.|++....++.+=...+.|...+++.....   ....  .-
T Consensus         3 fLl~s~~-~~I~~~~l~~~~~---~--~~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~   76 (266)
T d1ijqa1           3 YLFFTNR-HEVRKMTLDRSEY---T--SLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI   76 (266)
T ss_dssp             EEEEECB-SSEEEEETTSCCC---E--EEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSC
T ss_pred             EEEEECC-CeEEEEECCCCcc---e--eeeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCC
Confidence            3443333 3577778764321   1  122334456788888765555555455677776666432211   1111  12


Q ss_pred             CceEEEEEcCCCCEEEEE-eCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEE
Q 022716          109 GENINITYKPDGTHIAVG-NRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAV  187 (293)
Q Consensus       109 ~~~~~~~~~~~~~~l~~~-~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  187 (293)
                      ..+..+++.+.+..|... ...++|.+.++.......                    .+.........++++|...++..
T Consensus        77 ~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~--------------------~~~~~~~~P~~l~vd~~~g~ly~  136 (266)
T d1ijqa1          77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKT--------------------LFRENGSKPRAIVVDPVHGFMYW  136 (266)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEE--------------------EEECTTCCEEEEEEETTTTEEEE
T ss_pred             CCcceEEEeeccceEEEEecCCCEEEeEecCCceEEE--------------------EEcCCCCCcceEEEEcccCeEEE
Confidence            345578887766555544 345678888776533211                    12222334567778776555443


Q ss_pred             ec--CCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEe-cCCCcEEEEEcCCCC
Q 022716          188 GS--ADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASA-SEDLFIDISNVHTGR  245 (293)
Q Consensus       188 gs--~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~-s~d~~i~iw~~~~~~  245 (293)
                      ..  ..+.|.-.++............-...+.+++.+.++.|.-+ +..+.|...+.....
T Consensus       137 ~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~  197 (266)
T d1ijqa1         137 TDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN  197 (266)
T ss_dssp             EECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             eccCCCcceeEeccCCCceecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCC
Confidence            32  33456666665433322222233457899999887766544 567788888875543

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=87.11  E-value=5  Score=30.54  Aligned_cols=199  Identities=14%  Similarity=0.127  Sum_probs=110.8

Q ss_pred             CCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCe-eeeeeee
Q 022716           29 NCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGK-CSQQAEL  107 (293)
Q Consensus        29 s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~-~~~~~~~  107 (293)
                      +|..+.||--+ ..+++++|++..  .+.....   ....|....|-..  +.|+ -=.+..|.-|++.... +...+..
T Consensus        71 hP~~~IiALra-g~~LQiFnletK--~klks~~---~~e~VvfWkWis~--~~L~-lVT~taVYHW~~~g~s~P~k~fdR  141 (327)
T d1utca2          71 NPASKVIALKA-GKTLQIFNIEMK--SKMKAHT---MTDDVTFWKWISL--NTVA-LVTDNAVYHWSMEGESQPVKMFDR  141 (327)
T ss_dssp             CSSSSEEEEEE-TTEEEEEETTTT--EEEEEEE---CSSCCCEEEESSS--SEEE-EECSSEEEEEESSSSCCCEEEEEC
T ss_pred             CCCCcEEEEec-CCeEEEEehhHh--hhhceEE---cCCCcEEEEecCC--CEEE-EEcCCceEEEcccCCCCchhhhhh
Confidence            56677776555 568999999853  1222221   2456777788643  3333 2346789999995432 3333332


Q ss_pred             c-----CceEEEEEcCCCCEEEEEe---CC----CeEEEEEccccceeee---------ecc-----cceeeeeEEec-C
Q 022716          108 S-----GENINITYKPDGTHIAVGN---RD----DELTILDVRKFKPIHR---------RKF-----GYEVNEIAWNM-T  160 (293)
Q Consensus       108 ~-----~~~~~~~~~~~~~~l~~~~---~d----~~i~l~d~~~~~~~~~---------~~~-----~~~~~~v~~~~-~  160 (293)
                      +     ..++....+++.++++..+   .+    |.+.||..+.......         .+.     +..+.++.+.. .
T Consensus       142 ~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~  221 (327)
T d1utca2         142 HSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQA  221 (327)
T ss_dssp             CGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETT
T ss_pred             cccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcCccccceeeeeEEEEcCCCCCCceEEEEEECCCC
Confidence            2     3466778889999887654   23    4566777655432111         000     11122222211 1


Q ss_pred             -CCEEEEecC-----------------------CCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCee
Q 022716          161 -GEMFFLTTG-----------------------NAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVR  216 (293)
Q Consensus       161 -~~~~~~~~~-----------------------~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~  216 (293)
                       +++-.+.-+                       ++-..++-+++....+-.-+.-|.|++||++++.++..-+....+|-
T Consensus       222 ~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF  301 (327)
T d1utca2         222 GGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIF  301 (327)
T ss_dssp             EEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred             CcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEeecCCCceE
Confidence             111111110                       11244666677777788888999999999999998877666566665


Q ss_pred             EEEEccCCCEEEEecCCCcE
Q 022716          217 TISFSHTGDYIASASEDLFI  236 (293)
Q Consensus       217 ~l~~sp~~~~l~s~s~d~~i  236 (293)
                      .-+-..+..-+++...+|.|
T Consensus       302 ~~a~~~~~~Gi~~VNr~GqV  321 (327)
T d1utca2         302 VTAPHEATAGIIGVNRKGQV  321 (327)
T ss_dssp             EEEEETTTTEEEEEETTSEE
T ss_pred             EeccCCCCceEEEECCCCeE
Confidence            44444443334444455554

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=86.13  E-value=7.2  Score=31.40  Aligned_cols=109  Identities=11%  Similarity=0.073  Sum_probs=63.0

Q ss_pred             ecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEE--EEeec------cCCCeeEEEEccC---CCEEEEe-c---
Q 022716          167 TTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCV--RTFTK------LEWPVRTISFSHT---GDYIASA-S---  231 (293)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~--~~~~~------~~~~v~~l~~sp~---~~~l~s~-s---  231 (293)
                      ..+-....+++|.|+++.+++--..|.|++++..++...  ..+..      -+.....|+|+|+   ..++... +   
T Consensus        23 a~~L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~  102 (450)
T d1crua_          23 LSNLNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKN  102 (450)
T ss_dssp             ECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEEC
T ss_pred             ECCCCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCC
Confidence            344456779999999999887766799999987776432  22211      1235678999986   3344321 1   


Q ss_pred             ---CC----C--cEEEEEcCCCC-E-------EEEEecC--CCcceeEECCCCCeEEEEEcCC
Q 022716          232 ---ED----L--FIDISNVHTGR-T-------VHQIPCR--AAMNSVEWNPKYNLLAYAGDDK  275 (293)
Q Consensus       232 ---~d----~--~i~iw~~~~~~-~-------~~~~~~~--~~i~~~~~sp~~~~la~~~~d~  275 (293)
                         .+    .  .+..+...... .       +..++..  -.-..|.|.|++.++++.|+.+
T Consensus       103 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~Gd~~  165 (450)
T d1crua_         103 PKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGDQG  165 (450)
T ss_dssp             TTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECCTT
T ss_pred             CCCcccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEecCCC
Confidence               11    1  12233332221 1       1111111  1245799999999888887644

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=82.73  E-value=2.9  Score=35.06  Aligned_cols=61  Identities=16%  Similarity=0.164  Sum_probs=43.5

Q ss_pred             CeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeeccc
Q 022716           89 KTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFG  149 (293)
Q Consensus        89 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~  149 (293)
                      |.+.-||+.+++.+-..........-..+-.+..+++|+.|+.++.+|.++.+.+-+...+
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~  517 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTG  517 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             ccEEEeCCCCCceEeeecCCCCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECC
Confidence            4678889999987766655544332222335678888999999999999998877665543