Citrus Sinensis ID: 022734

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290---
MGSYNVLEPILKDILGMLNPLREDWETRMKVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDISIELSNGSCISSAGKKVKQSLLGDLLRALRQKGGYRRLQFVAHARVPILKFETIHQNISCDISIDNLCGQIKSKFLFWISQIDGRFRDMVLLVKEWAKAHDINNPKTGTFNSYSLSLLVLFHFQTCVPAILPPLKDIYPGNLVDDLKGVRANAERQIAEICAFNIARFSSDKYRKINRSSLAHLFVSFLEKVFIPVMFFLLIFAGNAKCSLDESRMLLYSLMFL
cccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccccEEEEEccccccccccccccccEEEEcccccccccHHHHHHHHHHHHHHHHHHcccccEEEEcccccccEEEEEEccccEEEEEEEEccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHcccccccccEEEEcccEEEccccccHHHHcccc
cccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEcccccccccccccEEEEEEccccccccHHHHHHHHHHHHHHHHHHHccccEEEEEccccEcEEEEEEcccccEEEEEEEccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHccccccHHHHHHcccccccccccHEEcHccEccccccccccHHHHHHccccccccHHHHHHHHHHHHcccccEEEEEEccccEcHHHHHHHHHHHHHHc
mgsynvlePILKDILGMLNPLREDWETRMKVISDLREVVESVEslrgatvepfgSFVSNLFsrwgdldisielsngscissagKKVKQSLLGDLLRALRQKGGYRRLQFVAHARVPILKFETIHQNISCDISIDNLCGQIKSKFLFWISQIDGRFRDMVLLVKEWAKahdinnpktgtfnsYSLSLLVLFHFQtcvpailpplkdiypgnlvddlkGVRANAERQIAEICAFNiarfssdkyRKINRSSLAHLFVSFLEKVFIPVMFFLLIFAGNAKCSLDESRMLLYSLMFL
MGSYNVLEPILKDILGMLNPLREDWETRMKVISDLREVVESVeslrgatvepfgSFVSNLFSRWGDLDISIELSNGSCISSAGKKVKQSLLGDLLRALRQKGGYRRLQFVAHARVPILKFETIHQNISCDISIDNLCGQIKSKFLFWISQIDGRFRDMVLLVKEWAkahdinnpkTGTFNSYSLSLLVLFHFQTCVPAILPPLKDIYPGNLVDDLKGVRANAERQIAEICAFNIARFSSDKYRKINRSSLAHLFVSFLEKVFIPVMFFLLIFAGNAKCSLDESRMLLYSLMFL
MGSYNVLEPILKDILGMLNPLREDWETRMKVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDISIELSNGSCISSAGKKVKQSLLGDLLRALRQKGGYRRLQFVAHARVPILKFETIHQNISCDISIDNLCGQIKSKFLFWISQIDGRFRDMVLLVKEWAKAHDINNPKTGTFNSYSLSLLVLFHFQTCVPAILPPLKDIYPGNLVDDLKGVRANAERQIAEICAFNIARFSSDKYRKINRSSLAHLFVSFLEKVFIPVMFFLLIFAGNAKCSLDESRMLLYSLMFL
****NVLEPILKDILGMLNPLREDWETRMKVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDISIELSNGSCISSAGKKVKQSLLGDLLRALRQKGGYRRLQFVAHARVPILKFETIHQNISCDISIDNLCGQIKSKFLFWISQIDGRFRDMVLLVKEWAKAHDINNPKTGTFNSYSLSLLVLFHFQTCVPAILPPLKDIYPGNLVDDLKGVRANAERQIAEICAFNIARFSSDKYRKINRSSLAHLFVSFLEKVFIPVMFFLLIFAGNAKCSLDESRMLLYSLM**
***YNVLEPILKDILGMLNPLREDWETRMKVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDISIELSNGSCISSAGKKVKQSLLGDLLRALRQKGGYRRLQFVAHARVPILKFETIHQNISCDISIDNLCGQIKSKFLFWISQIDGRFRDMVLLVKEWAKAHDINNPKTGTFNSYSLSLLVLFHFQTCVPAILPPLKDIYPGNLVDDLKGVRANAERQIAEICAFNIARFSSD*Y**INRSSLAHLFVSFLEKVFIPVMFFLLIFAGNAKCSLDESRMLLYSLMFL
MGSYNVLEPILKDILGMLNPLREDWETRMKVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDISIELSNGSCISSAGKKVKQSLLGDLLRALRQKGGYRRLQFVAHARVPILKFETIHQNISCDISIDNLCGQIKSKFLFWISQIDGRFRDMVLLVKEWAKAHDINNPKTGTFNSYSLSLLVLFHFQTCVPAILPPLKDIYPGNLVDDLKGVRANAERQIAEICAFNIARFSSDKYRKINRSSLAHLFVSFLEKVFIPVMFFLLIFAGNAKCSLDESRMLLYSLMFL
*GSYNVLEPILKDILGMLNPLREDWETRMKVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDISIELSNGSCISSAGKKVKQSLLGDLLRALRQKGGYRRLQFVAHARVPILKFETIHQNISCDISIDNLCGQIKSKFLFWISQIDGRFRDMVLLVKEWAKAHDINNPKTGTFNSYSLSLLVLFHFQTCVPAILPPLKDIYPGNLVDDLKGVRANAERQIAEICAFNIARFSSDKYRKINRSSLAHLFVSFLEKVFIPVMFFLLIFAGNAKCSLDESRMLLYSLMFL
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MGSYNVLEPILKDILGMLNPLREDWETRMKVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDISIELSNGSCISSAGKKVKQSLLGDLLRALRQKGGYRRLQFVAHARVPILKFETIHQNISCDISIDNLCGQIKSKFLFWISQIDGRFRDMVLLVKEWAKAHDINNPKTGTFNSYSLSLLVLFHFQTCVPAILPPLKDIYPGNLVDDLKGVRANAERQIAEICAFNIARFSSDKYRKINRSSLAHLFVSFLEKVFIPVMFFLLIFAGNAKCSLDESRMLLYSLMFL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query293 2.2.26 [Sep-21-2011]
Q9VYS4 1373 Poly(A) RNA polymerase gl yes no 0.324 0.069 0.469 4e-17
Q91YI6484 Poly(A) RNA polymerase GL yes no 0.655 0.396 0.295 3e-16
Q9VD44 1364 Poly(A) RNA polymerase gl no no 0.518 0.111 0.346 4e-16
Q2HJ44484 Poly(A) RNA polymerase GL yes no 0.522 0.316 0.327 8e-16
Q5U315484 Poly(A) RNA polymerase GL yes no 0.655 0.396 0.290 1e-15
Q6PIY7484 Poly(A) RNA polymerase GL yes no 0.522 0.316 0.327 2e-15
O74326 478 Poly(A) RNA polymerase ci yes no 0.658 0.403 0.297 4e-15
P53632 584 Poly(A) RNA polymerase pr yes no 0.610 0.306 0.314 8e-15
Q641A1509 Poly(A) RNA polymerase GL N/A no 0.511 0.294 0.331 2e-13
Q6DFA8509 Poly(A) RNA polymerase GL N/A no 0.498 0.286 0.310 4e-13
>sp|Q9VYS4|GLD2B_DROME Poly(A) RNA polymerase gld-2 homolog B OS=Drosophila melanogaster GN=wisp PE=1 SV=1 Back     alignment and function desciption
 Score = 89.0 bits (219), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 46/98 (46%), Positives = 66/98 (67%), Gaps = 3/98 (3%)

Query: 113  ARVPILKFETIHQNISCDISIDNLCGQIKSKFLFWI-SQIDGRFRDMVLLVKEWAKAHDI 171
            ARVPIL+F+ I   I  D++ +N C  IK+ +L  + +Q+D R R +V++VK WA+ HDI
Sbjct: 1086 ARVPILRFKDISNGIEVDLNFNN-CVGIKNTYLLQLYAQMDWRTRPLVVIVKLWAQYHDI 1144

Query: 172  NNPKTGTFNSYSLSLLVLFHFQ-TCVPAILPPLKDIYP 208
            N+ K  T +SYSL L+VL + Q  CVP +LP L  +YP
Sbjct: 1145 NDAKRMTISSYSLVLMVLHYLQHACVPHVLPCLHSLYP 1182
Cytoplasmic poly(A) RNA polymerase that adds successive AMP monomers to the 3'-end of specific maternal RNAs (bcd, Tl, and tor), forming a poly(A) tail, during late oogenesis and early embryogenesis. In contrast to the canonical nuclear poly(A) RNA polymerase, it only adds poly(A) to selected cytoplasmic mRNAs. Required for localization of mRNAs to both poles of the egg, to recruit or maintain known centrosomal proteins with two types of microtubule organizing centers (MTOCs): the central MTOC that forms between the meiosis II tandem spindles and the centrosomes of the mitotic spindle. Required at the final stage of oogenesis for meiosis I metaphase arrest and for progression beyond this stage.
Drosophila melanogaster (taxid: 7227)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 1EC: 9
>sp|Q91YI6|GLD2_MOUSE Poly(A) RNA polymerase GLD2 OS=Mus musculus GN=Papd4 PE=1 SV=1 Back     alignment and function description
>sp|Q9VD44|GLD2A_DROME Poly(A) RNA polymerase gld-2 homolog A OS=Drosophila melanogaster GN=Gld2 PE=1 SV=3 Back     alignment and function description
>sp|Q2HJ44|GLD2_BOVIN Poly(A) RNA polymerase GLD2 OS=Bos taurus GN=PAPD4 PE=2 SV=1 Back     alignment and function description
>sp|Q5U315|GLD2_RAT Poly(A) RNA polymerase GLD2 OS=Rattus norvegicus GN=Papd4 PE=2 SV=1 Back     alignment and function description
>sp|Q6PIY7|GLD2_HUMAN Poly(A) RNA polymerase GLD2 OS=Homo sapiens GN=PAPD4 PE=1 SV=1 Back     alignment and function description
>sp|O74326|CID11_SCHPO Poly(A) RNA polymerase cid11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cid11 PE=3 SV=1 Back     alignment and function description
>sp|P53632|PAP2_YEAST Poly(A) RNA polymerase protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PAP2 PE=1 SV=1 Back     alignment and function description
>sp|Q641A1|GLD2A_XENLA Poly(A) RNA polymerase GLD2-A OS=Xenopus laevis GN=papd4-a PE=1 SV=1 Back     alignment and function description
>sp|Q6DFA8|GLD2B_XENLA Poly(A) RNA polymerase GLD2-B OS=Xenopus laevis GN=papd4-b PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query293
255566462 493 zinc finger protein, putative [Ricinus c 0.887 0.527 0.730 1e-111
359486610 453 PREDICTED: poly(A) RNA polymerase GLD2-l 0.887 0.573 0.707 1e-105
356569346 415 PREDICTED: poly(A) RNA polymerase cid11- 0.887 0.626 0.688 1e-102
356537950328 PREDICTED: poly(A) RNA polymerase GLD2-l 0.887 0.792 0.680 1e-101
224112707300 predicted protein [Populus trichocarpa] 0.873 0.853 0.724 1e-101
449465848 464 PREDICTED: poly(A) RNA polymerase GLD2-l 0.860 0.543 0.690 1e-100
2642156 474 hypothetical protein [Arabidopsis thalia 0.880 0.544 0.678 2e-96
79571331 511 Nucleotidyltransferase family protein [A 0.866 0.497 0.681 1e-95
110735731 511 hypothetical protein [Arabidopsis thalia 0.866 0.497 0.681 5e-95
297823863 500 hypothetical protein ARALYDRAFT_321659 [ 0.866 0.508 0.657 5e-88
>gi|255566462|ref|XP_002524216.1| zinc finger protein, putative [Ricinus communis] gi|223536493|gb|EEF38140.1| zinc finger protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  406 bits (1044), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 190/260 (73%), Positives = 224/260 (86%)

Query: 1   MGSYNVLEPILKDILGMLNPLREDWETRMKVISDLREVVESVESLRGATVEPFGSFVSNL 60
           M +++VLEPIL+D L ++ PLREDW  R K+I +L++V+ S+ESLRGATVEPFGSFVSNL
Sbjct: 1   MNAHSVLEPILRDTLEVIKPLREDWAVRSKIIEELKDVIASIESLRGATVEPFGSFVSNL 60

Query: 61  FSRWGDLDISIELSNGSCISSAGKKVKQSLLGDLLRALRQKGGYRRLQFVAHARVPILKF 120
           F+RWGDLDISI L+NGS ISSA KK KQ++L +  +ALRQKGG+RRLQFV +ARVP+LKF
Sbjct: 61  FTRWGDLDISIMLANGSYISSAAKKRKQNVLREFHKALRQKGGWRRLQFVPNARVPLLKF 120

Query: 121 ETIHQNISCDISIDNLCGQIKSKFLFWISQIDGRFRDMVLLVKEWAKAHDINNPKTGTFN 180
           E+  QNISCD+SIDNL GQIKS FLFW++QIDGRFRDMVLLVKEWAKAH+INNPKTGT N
Sbjct: 121 ESGRQNISCDVSIDNLQGQIKSNFLFWLNQIDGRFRDMVLLVKEWAKAHNINNPKTGTLN 180

Query: 181 SYSLSLLVLFHFQTCVPAILPPLKDIYPGNLVDDLKGVRANAERQIAEICAFNIARFSSD 240
           SYSLSLLV+FHFQTCVPAILPPLK+IYP N+VDDL GVR  AE +I E C  NIAR+ SD
Sbjct: 181 SYSLSLLVIFHFQTCVPAILPPLKEIYPRNVVDDLTGVRTVAEERIKETCNANIARYMSD 240

Query: 241 KYRKINRSSLAHLFVSFLEK 260
           KYR +NRSSL+ LF+SF  K
Sbjct: 241 KYRAVNRSSLSELFISFFAK 260

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359486610|ref|XP_002277771.2| PREDICTED: poly(A) RNA polymerase GLD2-like [Vitis vinifera] gi|296086183|emb|CBI31624.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356569346|ref|XP_003552863.1| PREDICTED: poly(A) RNA polymerase cid11-like [Glycine max] Back     alignment and taxonomy information
>gi|356537950|ref|XP_003537469.1| PREDICTED: poly(A) RNA polymerase GLD2-like [Glycine max] Back     alignment and taxonomy information
>gi|224112707|ref|XP_002316267.1| predicted protein [Populus trichocarpa] gi|222865307|gb|EEF02438.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449465848|ref|XP_004150639.1| PREDICTED: poly(A) RNA polymerase GLD2-like [Cucumis sativus] gi|449516431|ref|XP_004165250.1| PREDICTED: poly(A) RNA polymerase GLD2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|2642156|gb|AAB87123.1| hypothetical protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|79571331|ref|NP_181504.2| Nucleotidyltransferase family protein [Arabidopsis thaliana] gi|53850481|gb|AAU95417.1| At2g39740 [Arabidopsis thaliana] gi|55733735|gb|AAV59264.1| At2g39740 [Arabidopsis thaliana] gi|330254623|gb|AEC09717.1| Nucleotidyltransferase family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|110735731|dbj|BAE99845.1| hypothetical protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297823863|ref|XP_002879814.1| hypothetical protein ARALYDRAFT_321659 [Arabidopsis lyrata subsp. lyrata] gi|297325653|gb|EFH56073.1| hypothetical protein ARALYDRAFT_321659 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query293
TAIR|locus:2063937 511 HESO1 "HEN1 suppressor 1" [Ara 0.866 0.497 0.681 1.2e-88
TAIR|locus:2102709 682 AT3G45750 "AT3G45750" [Arabido 0.699 0.300 0.369 2.2e-30
TAIR|locus:2102714 474 AT3G45760 [Arabidopsis thalian 0.686 0.424 0.351 1.1e-28
UNIPROTKB|Q2HJ44484 PAPD4 "Poly(A) RNA polymerase 0.522 0.316 0.327 5.5e-17
MGI|MGI:2140950484 Papd4 "PAP associated domain c 0.655 0.396 0.295 5.5e-17
DICTYBASE|DDB_G02784251090 DDB_G0278425 [Dictyostelium di 0.604 0.162 0.308 1.4e-16
UNIPROTKB|Q6PIY7484 PAPD4 "Poly(A) RNA polymerase 0.522 0.316 0.327 7.4e-16
RGD|1306438484 Papd4 "PAP associated domain c 0.655 0.396 0.290 7.4e-16
FB|FBgn0260780 1373 wisp "wispy" [Drosophila melan 0.324 0.069 0.469 1e-15
UNIPROTKB|F1RF43484 PAPD4 "Uncharacterized protein 0.655 0.396 0.280 1.1e-15
TAIR|locus:2063937 HESO1 "HEN1 suppressor 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 885 (316.6 bits), Expect = 1.2e-88, P = 1.2e-88
 Identities = 173/254 (68%), Positives = 208/254 (81%)

Query:     7 LEPILKDILGMLNPLREDWETRMKVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGD 66
             L+P L++IL ++ P R D +TR+ VI  LR+V++SVE LRGATV+PFGSFVSNLF+RWGD
Sbjct:     7 LDPTLQEILQVIKPTRADRDTRITVIDQLRDVLQSVECLRGATVQPFGSFVSNLFTRWGD 66

Query:    67 LDISIELSNGSCISSAGKKVKQSLLGDLLRALRQKGGYRRLQFVAHARVPILKFETIHQN 126
             LDIS++L +GS I   GKK KQ+LLG LLRALR  G + +LQFV HARVPILK  + HQ 
Sbjct:    67 LDISVDLFSGSSILFTGKKQKQTLLGHLLRALRASGLWYKLQFVIHARVPILKVVSGHQR 126

Query:   127 ISCDISIDNLCGQIKSKFLFWISQIDGRFRDMVLLVKEWAKAHDINNPKTGTFNSYSLSL 186
             ISCDISIDNL G +KS+FLFWIS+IDGRFRD+VLLVKEWAKAH+IN+ KTGTFNSYSLSL
Sbjct:   127 ISCDISIDNLDGLLKSRFLFWISEIDGRFRDLVLLVKEWAKAHNINDSKTGTFNSYSLSL 186

Query:   187 LVLFHFQTCVPAILPPLKDIYPGNLVDDLKGVRANAERQIAEICAFNIARFSSDKYRKIN 246
             LV+FHFQTCVPAILPPL+ IYP + VDDL GVR  AE  IA++ A NIARF S++ + +N
Sbjct:   187 LVIFHFQTCVPAILPPLRVIYPKSAVDDLTGVRKTAEESIAQVTAANIARFKSERAKSVN 246

Query:   247 RSSLAHLFVSFLEK 260
             RSSL+ L VSF  K
Sbjct:   247 RSSLSELLVSFFAK 260
GO:0005737 "cytoplasm" evidence=ISM;IDA
GO:0005634 "nucleus" evidence=IDA
GO:0016779 "nucleotidyltransferase activity" evidence=IDA
GO:0071076 "RNA 3' uridylation" evidence=IMP
TAIR|locus:2102709 AT3G45750 "AT3G45750" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2102714 AT3G45760 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q2HJ44 PAPD4 "Poly(A) RNA polymerase GLD2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:2140950 Papd4 "PAP associated domain containing 4" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0278425 DDB_G0278425 [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|Q6PIY7 PAPD4 "Poly(A) RNA polymerase GLD2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1306438 Papd4 "PAP associated domain containing 4" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
FB|FBgn0260780 wisp "wispy" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|F1RF43 PAPD4 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.7.7LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query293
cd05402114 cd05402, NT_PAP_TUTase, Nucleotidyltransferase (NT 4e-24
COG5260 482 COG5260, TRF4, DNA polymerase sigma [DNA replicati 3e-21
>gnl|CDD|143392 cd05402, NT_PAP_TUTase, Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases Back     alignment and domain information 
 Score = 93.8 bits (234), Expect = 4e-24
 Identities = 35/122 (28%), Positives = 60/122 (49%), Gaps = 9/122 (7%)

Query: 28  RMKVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDISIELSNGSCISSAGKKVK 87
           R +V+  L+E+++      GA + PFGS+V+ L     D+D+ +   N        +  +
Sbjct: 2   REEVLDRLQELIKEWFP--GAKLYPFGSYVTGLGLPGSDIDLCLLGPNH-------RVDR 52

Query: 88  QSLLGDLLRALRQKGGYRRLQFVAHARVPILKFETIHQNISCDISIDNLCGQIKSKFLFW 147
           +  L  L + L++ G    ++ + +ARVPI+KF      I  DIS +NL G   +K L  
Sbjct: 53  EDFLRKLAKLLKKSGEVVEVEPIINARVPIIKFVDKPTGIEVDISFNNLNGIRNTKLLRA 112

Query: 148 IS 149
             
Sbjct: 113 YV 114

Poly(A) polymerases (PAPs) catalyze mRNA poly(A) tail synthesis, and terminal uridylyl transferases (TUTases) uridylate RNA. PAPs in this subgroup include human PAP alpha, mouse testis-specific cytoplasmic PAP beta, human nuclear PAP gamma, Saccharomyces cerevisiae PAP1, TRF4 and-5, Schizosaccharomyces pombe caffeine-induced death proteins -1, and -14, Caenorhabditis elegans Germ Line Development-2, and Chlamydomonas reinhardtii MUT68. This family also includes human U6 snRNA-specific TUTase1, and Trypanosoma brucei 3'-TUTase-1,-2, and 4. This family belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more distal carboxylate, coordinate two divalent metal cations involved in a two-metal ion mechanism of nucleotide addition. For the majority of proteins in this family, these carboxylate residues are conserved. Length = 114
>gnl|CDD|227585 COG5260, TRF4, DNA polymerase sigma [DNA replication, recombination, and repair] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 293
COG5260 482 TRF4 DNA polymerase sigma [DNA replication, recomb 100.0
KOG1906 514 consensus DNA polymerase sigma [Replication, recom 100.0
KOG2277 596 consensus S-M checkpoint control protein CID1 and 99.97
PTZ00418 593 Poly(A) polymerase; Provisional 99.94
cd05402114 NT_PAP_TUTase Nucleotidyltransferase (NT) domain o 99.94
KOG2245 562 consensus Poly(A) polymerase and related nucleotid 99.88
COG5186 552 PAP1 Poly(A) polymerase [RNA processing and modifi 99.71
TIGR03671 408 cca_archaeal CCA-adding enzyme. 99.62
PRK13300 447 tRNA CCA-pyrophosphorylase; Provisional 99.61
COG1746 443 CCA1 tRNA nucleotidyltransferase (CCA-adding enzym 99.41
PF04928254 PAP_central: Poly(A) polymerase central domain; In 99.32
cd05400143 NT_2-5OAS_ClassI-CCAase Nucleotidyltransferase (NT 98.28
cd0539749 NT_Pol-beta-like Nucleotidyltransferase (NT) domai 98.23
PF0382860 PAP_assoc: Cid1 family poly A polymerase; InterPro 98.18
PF0190993 NTP_transf_2: Nucleotidyltransferase domain A subs 98.15
cd0540393 NT_KNTase_like Nucleotidyltransferase (NT) domain 97.79
COG166997 Predicted nucleotidyltransferases [General functio 97.29
smart00572246 DZF domain in DSRM or ZnF_C2H2 domain containing p 97.21
PF03813 972 Nrap: Nrap protein; InterPro: IPR005554 Members of 97.17
COG1708128 Predicted nucleotidyltransferases [General functio 96.92
PRK13746262 aminoglycoside resistance protein; Provisional 96.74
PF10421190 OAS1_C: 2'-5'-oligoadenylate synthetase 1, domain 96.59
PF14091152 DUF4269: Domain of unknown function (DUF4269) 96.17
PF09249114 tRNA_NucTransf2: tRNA nucleotidyltransferase, seco 95.43
PF07528248 DZF: DZF domain; InterPro: IPR006561 This domain i 94.65
PRK02098221 phosphoribosyl-dephospho-CoA transferase; Provisio 94.64
TIGR03135202 malonate_mdcG holo-ACP synthase, malonate decarbox 94.46
PF14792112 DNA_pol_B_palm: DNA polymerase beta palm ; PDB: 1R 94.05
KOG3793362 consensus Transcription factor NFAT, subunit NF45 93.19
cd00141307 NT_POLXc Nucleotidyltransferase (NT) domain of fam 93.17
PF03813 972 Nrap: Nrap protein; InterPro: IPR005554 Members of 90.37
COG2413228 Predicted nucleotidyltransferase [General function 87.74
PF10620213 MdcG: Phosphoribosyl-dephospho-CoA transferase Mdc 87.28
KOG2054 1121 consensus Nucleolar RNA-associated protein (NRAP) 86.44
PF10127247 Nuc-transf: Predicted nucleotidyltransferase; Inte 86.4
PRK01293207 phosphoribosyl-dephospho-CoA transferase; Provisio 85.32
KOG2054 1121 consensus Nucleolar RNA-associated protein (NRAP) 85.31
cd05401172 NT_GlnE_GlnD_like Nucleotidyltransferase (NT) doma 84.13
KOG2534353 consensus DNA polymerase IV (family X) [Replicatio 83.36
>COG5260 TRF4 DNA polymerase sigma [DNA replication, recombination, and repair] Back     alignment and domain information 
Probab=100.00  E-value=5.4e-44  Score=333.16  Aligned_cols=233  Identities=25%  Similarity=0.346  Sum_probs=199.0

Q ss_pred             ccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCEEEeecCcccCCCCCCCCcceeeecCCCCcccccc
Q 022734            4 YNVLEPILKDILGMLNPLREDWETRMKVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDISIELSNGSCISSAG   83 (293)
Q Consensus         4 ~~~L~~~l~~~~~~~~pt~~e~~~R~~~~~~l~~~l~~~~~~~~~~v~~fGS~~tgl~~~~SDiDl~l~~~~~~~~~s~~   83 (293)
                      .+.|+.+|.+|++++.|+.+|.++|..+++.|+.++++.  ||++.+.+|||+.+|+++|.||+|+||..++...     
T Consensus        54 ~~~lt~el~~~y~~I~ps~eEl~~R~~~leklr~~lk~~--~pda~l~vFGS~~t~L~l~~SDiDl~I~s~~~~~-----  126 (482)
T COG5260          54 SDELTSELLEFYDYIAPSDEELKRRKALLEKLRTLLKKE--FPDADLKVFGSTETGLALPKSDIDLCIISDPRGY-----  126 (482)
T ss_pred             HHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHh--CCccceeEecccccccccCcccccEEEecCCccc-----
Confidence            458999999999999999999999999999999999997  7999999999999999999999999999865322     


Q ss_pred             hhhHHHHHHHHHHHHHhcCCcceEEEeccCcceEEEEEEcCCceEEEEeecCchhhhhhHHHHHHhccCchhHHHHHHHH
Q 022734           84 KKVKQSLLGDLLRALRQKGGYRRLQFVAHARVPILKFETIHQNISCDISIDNLCGQIKSKFLFWISQIDGRFRDMVLLVK  163 (293)
Q Consensus        84 k~~~~~~l~~l~~~L~~~~~~~~v~~I~~ArVPIIk~~~~~~gi~vDIs~~n~~g~~~t~ll~~~~~~~~~~r~L~~~iK  163 (293)
                      +..+. .+ .++..+.....+.++.++.+|||||||++++.+|+.|||++||..|+.+|++++.|...+|++|||+++||
T Consensus       127 ~et~~-~~-~l~~~l~~~~~~~~~~~v~tarVPIIKl~d~~s~l~~Disfn~~~~~~~akl~~~~~~~~P~lrpLvliIK  204 (482)
T COG5260         127 KETRN-AG-SLASHLFKKNLAKEVVVVSTARVPIIKLVDPQSGLHCDISFNNTNGIVNAKLIRSYLKEDPRLRPLVLIIK  204 (482)
T ss_pred             ccccc-HH-HHHHHHHHhccCeeeEEEEecccceEEEecCccceEEEeecCchhHHHHHHHHHHHHhcCcccchHHHHHH
Confidence            12222 23 45555656678889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCchhhhcCCCCCCccccccchhhHHHHHHhhhhcccccCCccC
Q 022734          164 EWAKAHDINNPKTGTFNSYSLSLLVLFHFQTCVPAILPPLKDIYPGNLVDDLKGVRANAERQIAEICAFNIARFSSDKYR  243 (293)
Q Consensus       164 ~wak~~~l~~~~~G~lsSy~l~lmvi~fLQ~~~p~ilP~l~~l~~~~~~~d~~~~~~~~e~~~~~~~~~~~~~~~~~~~~  243 (293)
                      ||+++|.|++++.|||+||++++||+.|||.++|  .|-+++.                              +.+....
T Consensus       205 hwl~~R~ln~~~~GtL~sy~i~cmV~sfLq~~~~--~~~~~~~------------------------------~~~~l~~  252 (482)
T COG5260         205 HWLKRRALNDVATGTLSSYTISCMVLSFLQMHPP--FLFFDNG------------------------------LLSPLKY  252 (482)
T ss_pred             HHHHHHhhcccccCcchhhhhHHHHHHHHHhCCc--ccccccc------------------------------ccchhhc
Confidence            9999999999999999999999999999999944  1111110                              0011234


Q ss_pred             CCCcchHHHHHHHHHHHhccCcchhhhhhcccccccccc
Q 022734          244 KINRSSLAHLFVSFLEKVFIPVMFFLLIFAGNAKCSLDE  282 (293)
Q Consensus       244 ~~n~~sl~~Ll~~Ff~yY~~~~~~~~f~~~~~~~c~~~~  282 (293)
                      ..|..++|-||.+||+||+..     |+|..-++-+..|
T Consensus       253 ~~~~~~lgvLf~dFf~~yG~~-----f~Y~~~~~si~~g  286 (482)
T COG5260         253 NKNIDNLGVLFDDFFELYGKS-----FNYSLVVLSINSG  286 (482)
T ss_pred             cccccccchHHHHHHHHhccc-----cChhheEEEecCC
Confidence            567789999999999999997     8898886666555

>KOG1906 consensus DNA polymerase sigma [Replication, recombination and repair] Back     alignment and domain information
>KOG2277 consensus S-M checkpoint control protein CID1 and related nucleotidyltransferases [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PTZ00418 Poly(A) polymerase; Provisional Back     alignment and domain information
>cd05402 NT_PAP_TUTase Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases Back     alignment and domain information
>KOG2245 consensus Poly(A) polymerase and related nucleotidyltransferases [RNA processing and modification] Back     alignment and domain information
>COG5186 PAP1 Poly(A) polymerase [RNA processing and modification] Back     alignment and domain information
>TIGR03671 cca_archaeal CCA-adding enzyme Back     alignment and domain information
>PRK13300 tRNA CCA-pyrophosphorylase; Provisional Back     alignment and domain information
>COG1746 CCA1 tRNA nucleotidyltransferase (CCA-adding enzyme) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF04928 PAP_central: Poly(A) polymerase central domain; InterPro: IPR007012 In eukaryotes, polyadenylation of pre-mRNA plays an essential role in the initiation step of protein synthesis, as well as in the export and stability of mRNAs Back     alignment and domain information
>cd05400 NT_2-5OAS_ClassI-CCAase Nucleotidyltransferase (NT) domain of 2'5'-oligoadenylate (2-5A)synthetase (2-5OAS) and class I CCA-adding enzyme Back     alignment and domain information
>cd05397 NT_Pol-beta-like Nucleotidyltransferase (NT) domain of DNA polymerase beta and similar proteins Back     alignment and domain information
>PF03828 PAP_assoc: Cid1 family poly A polymerase; InterPro: IPR002058 These PAP/25A associated domains are found in uncharacterised eukaryotic proteins, a number of which are described as 'topoisomerase 1-related' though they appear to have little or no homology to topoisomerase 1 Back     alignment and domain information
>PF01909 NTP_transf_2: Nucleotidyltransferase domain A subset of this Pfam family; InterPro: IPR002934 A small region that overlaps with a nuclear localization signal and binds to the RNA primer contains three aspartates that are essential for catalysis Back     alignment and domain information
>cd05403 NT_KNTase_like Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins Back     alignment and domain information
>COG1669 Predicted nucleotidyltransferases [General function prediction only] Back     alignment and domain information
>smart00572 DZF domain in DSRM or ZnF_C2H2 domain containing proteins Back     alignment and domain information
>PF03813 Nrap: Nrap protein; InterPro: IPR005554 Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human Back     alignment and domain information
>COG1708 Predicted nucleotidyltransferases [General function prediction only] Back     alignment and domain information
>PRK13746 aminoglycoside resistance protein; Provisional Back     alignment and domain information
>PF10421 OAS1_C: 2'-5'-oligoadenylate synthetase 1, domain 2, C-terminus ; InterPro: IPR018952 This is the largely alpha-helical, C-terminal half of 2'-5'-oligoadenylate synthetase 1, being described as domain 2 of the enzyme and homologous to a tandem ubiquitin repeat Back     alignment and domain information
>PF14091 DUF4269: Domain of unknown function (DUF4269) Back     alignment and domain information
>PF09249 tRNA_NucTransf2: tRNA nucleotidyltransferase, second domain; InterPro: IPR015329 This domain adopts a structure consisting of a five helical bundle core Back     alignment and domain information
>PF07528 DZF: DZF domain; InterPro: IPR006561 This domain is found in proteins containing the double-stranded RNA-binding motif, DSRM (IPR001159 from INTERPRO), or the zinc finger domain C2H2 (IPR007087 from INTERPRO) Back     alignment and domain information
>PRK02098 phosphoribosyl-dephospho-CoA transferase; Provisional Back     alignment and domain information
>TIGR03135 malonate_mdcG holo-ACP synthase, malonate decarboxylase-specific Back     alignment and domain information
>PF14792 DNA_pol_B_palm: DNA polymerase beta palm ; PDB: 1RZT_A 3PML_A 2PFN_A 3HX0_K 3HWT_A 2GWS_E 2BCQ_A 3UPQ_A 2BCS_A 3UQ2_A Back     alignment and domain information
>KOG3793 consensus Transcription factor NFAT, subunit NF45 [Transcription] Back     alignment and domain information
>cd00141 NT_POLXc Nucleotidyltransferase (NT) domain of family X DNA Polymerases Back     alignment and domain information
>PF03813 Nrap: Nrap protein; InterPro: IPR005554 Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human Back     alignment and domain information
>COG2413 Predicted nucleotidyltransferase [General function prediction only] Back     alignment and domain information
>PF10620 MdcG: Phosphoribosyl-dephospho-CoA transferase MdcG; InterPro: IPR017557 Malonate decarboxylase, like citrate lyase, has a unique acyl carrier protein subunit with a prosthetic group derived from, and distinct from, coenzyme A Back     alignment and domain information
>KOG2054 consensus Nucleolar RNA-associated protein (NRAP) [Function unknown] Back     alignment and domain information
>PF10127 Nuc-transf: Predicted nucleotidyltransferase; InterPro: IPR018775 Proteins in this entry are predicted to catalyse the transfer of nucleotide residues from nucleoside diphosphates or triphosphates into dimer or polymer forms Back     alignment and domain information
>PRK01293 phosphoribosyl-dephospho-CoA transferase; Provisional Back     alignment and domain information
>KOG2054 consensus Nucleolar RNA-associated protein (NRAP) [Function unknown] Back     alignment and domain information
>cd05401 NT_GlnE_GlnD_like Nucleotidyltransferase (NT) domain of Escherichia coli adenylyltransferase (GlnE), Escherichia coli uridylyl transferase (GlnD), and similar proteins Back     alignment and domain information
>KOG2534 consensus DNA polymerase IV (family X) [Replication, recombination and repair] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query293
3nyb_A323 Structure And Function Of The Polymerase Core Of Tr 2e-15
4ep7_A340 Functional Implications From The Cid1 Poly(U) Polym 1e-12
4fhx_A349 Crystal Structures Of The Cid1 Poly (U) Polymerase 2e-12
4fh3_A349 Crystal Structures Of The Cid1 Poly (U) Polymerase 2e-12
4e7x_A405 Structural Basis For The Activity Of A Cytoplasmic 2e-12
3hj1_A387 Minor Editosome-Associated Tutase 1 With Bound Utp 5e-12
3hiy_B384 Minor Editosome-Associated Tutase 1 With Bound Utp 3e-11
3pq1_A464 Crystal Structure Of Human Mitochondrial Poly(A) Po 1e-08
>pdb|3NYB|A Chain A, Structure And Function Of The Polymerase Core Of Tramp, A Rna Surveillance Complex Length = 323 Back     alignment and structure 
Iteration: 1

 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/191 (30%), Positives = 96/191 (50%), Gaps = 12/191 (6%)
Query: 11  LKDILGMLNPLREDWETRMKVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDIS 70
           +KD +  ++P RE+ E R + IS +RE V+ +     A +  FGS+ ++L+    D+D  
Sbjct: 25  IKDFVAYISPSREEIEIRNQTISTIREAVKQL--WPDADLHVFGSYSTDLYLPGSDIDCV 82
Query: 71  IELSNGSCISSAGKKVKQSLLGDLLRALRQKGGYRRLQFVAHARVPILKFETIHQNISCD 130
           +        S  G K  ++ L  L   L++K     ++ VA ARVPI+KF   H  I   
Sbjct: 83  V-------TSELGGKESRNNLYSLASHLKKKNLATEVEVVAKARVPIIKFVEPHSGIHIA 135
Query: 131 ISIDNLCGQIKSKFLF-WISQIDGRFRDMVLLVKEWAKAHDINNPKTGTFNSYSLSLLVL 189
           +S +   G   +K +  W+    G  R++VL+VK++  A  +NN  TG    +S+  LV 
Sbjct: 136 VSFERTNGIEAAKLIREWLDDTPG-LRELVLIVKQFLHARRLNNVHTGGLGGFSIICLV- 193
Query: 190 FHFQTCVPAIL 200
           F F    P I+
Sbjct: 194 FSFLHMHPRII 204
>pdb|4EP7|A Chain A, Functional Implications From The Cid1 Poly(U) Polymerase Crystal Structure Length = 340 Back     alignment and structure
>pdb|4FHX|A Chain A, Crystal Structures Of The Cid1 Poly (U) Polymerase Reveal The Mechanism For Utp Selectivity - H336n Mutant Bound To Mgatp Length = 349 Back     alignment and structure
>pdb|4FH3|A Chain A, Crystal Structures Of The Cid1 Poly (U) Polymerase Reveal The Mechanism For Utp Selectivity Length = 349 Back     alignment and structure
>pdb|4E7X|A Chain A, Structural Basis For The Activity Of A Cytoplasmic Rna Terminal U- Transferase Length = 405 Back     alignment and structure
>pdb|3HJ1|A Chain A, Minor Editosome-Associated Tutase 1 With Bound Utp Length = 387 Back     alignment and structure
>pdb|3HIY|B Chain B, Minor Editosome-Associated Tutase 1 With Bound Utp And Mg Length = 384 Back     alignment and structure
>pdb|3PQ1|A Chain A, Crystal Structure Of Human Mitochondrial Poly(A) Polymerase (Papd1) Length = 464 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query293
3pq1_A464 Poly(A) RNA polymerase; nucleotidyl transferase, R 1e-49
3hj4_A384 Minor editosome-associated tutase; nucleotidyltran 3e-44
4e8f_A405 Poly(A) RNA polymerase protein CID1; beta polymera 3e-39
4ep7_A340 Poly(A) RNA polymerase protein CID1; poly(U) polym 4e-37
3nyb_A323 Poly(A) RNA polymerase protein 2; polya RNA polyme 4e-36
2ikf_A353 RNA uridylyl transferase; tutase, nucleotidyltrans 1e-34
2b4v_A468 RNA editing complex protein MP57; tbret2, TBMP57, 8e-34
2hhp_A 530 Poly(A) polymerase; template-independent RNA polym 3e-19
1q79_A 514 Poly(A) polymerase alpha; mRNA processing, nucleot 7e-16
1r89_A 437 TRNA nucleotidyltransferase; CCA adding enzyme, in 8e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens} Length = 464 Back     alignment and structure
 Score =  170 bits (430), Expect = 1e-49
 Identities = 59/268 (22%), Positives = 103/268 (38%), Gaps = 30/268 (11%)

Query: 11  LKDILGMLNPLREDWETRMKVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDIS 70
           L  +L       E+ + R    S + ++  +        V PFGS V+       DLD+ 
Sbjct: 138 LNTLLKEFQLTEENTKLRYLTCSLIEDMAAAY--FPDCIVRPFGSSVNTFGKLGCDLDMF 195

Query: 71  IELSNGSCISSAG-----------------KKVKQSLLGDLLRALRQKG-GYRRLQFVAH 112
           ++L     +S+                   +   Q +L  L   L   G G   +Q + +
Sbjct: 196 LDLDETRNLSAHKISGNFLMEFQVKNVPSERIATQKILSVLGECLDHFGPGCVGVQKILN 255

Query: 113 ARVPILKFETIHQNISCDISIDNLCGQIKSKFLFWISQIDGRFRDMVLLVKEWAKAHDIN 172
           AR P+++F        C ++ +N      S+ L+    +D R R +V  V+ WA+AH + 
Sbjct: 256 ARCPLVRFSHQASGFQCALTTNNRIALTSSELLYIYGALDSRVRALVFSVRCWARAHSLT 315

Query: 173 NPKTGT-FNSYSLSLLVLFHFQTCVPAILPPLKDIYPGNLVDDLKGVRANAERQIAEICA 231
           +   G    ++SL+++V+F  Q   P ILP L  +           +    ++ + E   
Sbjct: 316 SSIPGAWITNFSLTMMVIFFLQRRSPPILPTLDSLKT---------LADAEDKCVIEGNN 366

Query: 232 FNIARFSSDKYRKINRSSLAHLFVSFLE 259
               R  S      N  +L  L   F E
Sbjct: 367 CTFVRDLSRIKPSQNTETLELLLKEFFE 394
>4e8f_A Poly(A) RNA polymerase protein CID1; beta polymerase-like nucleotidyl transferase, terminal uridi transferase, UTP, cytoplasmic; 2.60A {Schizosaccharomyces pombe 972h-} PDB: 4e7x_A* 4e80_A Length = 405 Back     alignment and structure
>4ep7_A Poly(A) RNA polymerase protein CID1; poly(U) polymerase, UTP binding, transferase; HET: UTP; 2.28A {Schizosaccharomyces pombe} Length = 340 Back     alignment and structure
>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae} Length = 323 Back     alignment and structure
>2ikf_A RNA uridylyl transferase; tutase, nucleotidyltransferase, UTP-binding, RNA editing; HET: UTP; 2.00A {Trypanosoma brucei} PDB: 2nom_A* 2q0c_A* 2q0d_A* 2q0e_A* 2q0f_A* 2q0g_A* Length = 353 Back     alignment and structure
>2b4v_A RNA editing complex protein MP57; tbret2, TBMP57, terminal uridylyl transferase, editosome, transferase/RNA binding protein complex; 1.80A {Trypanosoma brucei} SCOP: a.160.1.4 d.218.1.10 PDB: 2b51_A* 2b56_A* Length = 468 Back     alignment and structure
>2hhp_A Poly(A) polymerase; template-independent RNA polymerase, transferase; HET: FLC; 1.80A {Saccharomyces cerevisiae} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1fa0_A* 3c66_A* 2o1p_A 2q66_A* Length = 530 Back     alignment and structure
>1r89_A TRNA nucleotidyltransferase; CCA adding enzyme, incoming nucleotide, nucleotidyltransfera superfamily; HET: CTP; 1.80A {Archaeoglobus fulgidus} SCOP: a.160.1.3 d.218.1.7 d.58.16.2 PDB: 1r8a_A 1r8b_A* 1r8c_A* 1sz1_A* 1tfw_A* 1tfy_A* 1uet_A 1ueu_A* 1uev_A* 2dr5_A 2dr7_A 2dr8_A* 2dr9_A 2dra_A* 2drb_A 2dvi_A* 2zh1_A 2zh2_A 2zh3_A 2zh4_A ... Length = 437 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query293
3pq1_A464 Poly(A) RNA polymerase; nucleotidyl transferase, R 100.0
4e8f_A405 Poly(A) RNA polymerase protein CID1; beta polymera 100.0
3hj4_A 384 Minor editosome-associated tutase; nucleotidyltran 100.0
3nyb_A323 Poly(A) RNA polymerase protein 2; polya RNA polyme 100.0
4fh3_A349 Poly(A) RNA polymerase protein CID1; nucleotidyltr 100.0
2ikf_A353 RNA uridylyl transferase; tutase, nucleotidyltrans 100.0
2b4v_A468 RNA editing complex protein MP57; tbret2, TBMP57, 100.0
1q79_A 514 Poly(A) polymerase alpha; mRNA processing, nucleot 100.0
2hhp_A 530 Poly(A) polymerase; template-independent RNA polym 100.0
1r89_A 437 TRNA nucleotidyltransferase; CCA adding enzyme, in 99.44
1px5_A349 2'-5'-oligoadenylate synthetase 1; 5-stranded anti 99.2
4at7_A364 Interleukin enhancer-binding factor 2; transcripti 98.44
1no5_A114 Hypothetical protein HI0073; structural genomics, 98.06
1ylq_A96 Putative nucleotidyltransferase, hypothetical Pro 97.78
1wot_A98 Putative minimal nucleotidyltransferase; alpha and 97.65
2rff_A111 Putative nucleotidyltransferase; NP_343093.1, nucl 97.59
4ebj_A272 Aminoglycoside nucleotidyltransferase; structural 96.62
4at7_B383 NF90, interleukin enhancer-binding factor 3; trans 96.41
1kny_A253 Kntase, kanamycin nucleotidyltransferase; antibiot 96.23
2fmp_A335 DNA polymerase beta; nucleotidyl transferase, tran 93.62
2bcq_A335 DNA polymerase lambda; misalignment, extrahelical, 93.0
3jz0_A287 Lincosamide nucleotidyltransferase; alpha-beta str 91.72
2ihm_A360 POL MU, DNA polymerase MU; helix-turn-helix, trans 86.58
3b0x_A 575 DNA polymerase beta family (X family); structural 83.32
1jaj_A174 DNA polymerase beta-like protein; CIS peptide, vir 82.29
2pbe_A294 AAD6, aminoglycoside 6-adenylyltransferase; NYSGXR 80.72
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=8.6e-58  Score=434.40  Aligned_cols=260  Identities=22%  Similarity=0.340  Sum_probs=203.8

Q ss_pred             CccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCEEEeecCcccCCCCCCCCcceeeecCCCCcccc-
Q 022734            3 SYNVLEPILKDILGMLNPLREDWETRMKVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDISIELSNGSCISS-   81 (293)
Q Consensus         3 ~~~~L~~~l~~~~~~~~pt~~e~~~R~~~~~~l~~~l~~~~~~~~~~v~~fGS~~tgl~~~~SDiDl~l~~~~~~~~~s-   81 (293)
                      ....|+.||.+|+++++||++|.+.|..++++|++++++.  ||+++|.+|||++||+++|+||||+|+..++....+. 
T Consensus       130 ~a~sl~~EI~~f~~~i~PT~eE~~~R~~vv~~le~ii~~~--fP~a~V~~FGS~~tGL~lp~SDIDlvl~~~~~~~~~~~  207 (464)
T 3pq1_A          130 YAESIDDQLNTLLKEFQLTEENTKLRYLTCSLIEDMAAAY--FPDCIVRPFGSSVNTFGKLGCDLDMFLDLDETRNLSAH  207 (464)
T ss_dssp             TSSSHHHHHHHHHHHHBCCHHHHHHHHHHHHHHHHHHTTT--STTCEEEEEGGGTSSCCBTTCCEEEEEECC-----CCS
T ss_pred             ccchHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH--CCCCEEEEeCCCccCCCCCCCCeEEEEecCCccccccc
Confidence            3467999999999999999999999999999999999987  7999999999999999999999999998764321100 


Q ss_pred             ----------------cchhhHHHHHHHHHHHHHhc-CCcceEEEeccCcceEEEEEEcCCceEEEEeecCchhhhhhHH
Q 022734           82 ----------------AGKKVKQSLLGDLLRALRQK-GGYRRLQFVAHARVPILKFETIHQNISCDISIDNLCGQIKSKF  144 (293)
Q Consensus        82 ----------------~~k~~~~~~l~~l~~~L~~~-~~~~~v~~I~~ArVPIIk~~~~~~gi~vDIs~~n~~g~~~t~l  144 (293)
                                      .++...+++|+.+++.|++. +++.+++.|.+||||||||.++.+|++||||+||..|+.||++
T Consensus       208 ~~~g~~~le~~~k~l~seR~~~~~iL~~la~~L~~~~~~~~~v~~I~~ARVPIIKf~~~~tgi~~DIS~nn~~gi~ns~l  287 (464)
T 3pq1_A          208 KISGNFLMEFQVKNVPSERIATQKILSVLGECLDHFGPGCVGVQKILNARCPLVRFSHQASGFQCALTTNNRIALTSSEL  287 (464)
T ss_dssp             CEECC---EECCCCCSCHHHHHHHHHHHHHHHHHHSSTTEEEEEEECSSSSCEEEEEETTTCCEEEEECSCTTHHHHHHH
T ss_pred             ccccchhhhhhhccchhhHHHHHHHHHHHHHHHHhcCCCCceeEEecCCCCCEEEEEEcCCCeEEEEecCCCcHHHHHHH
Confidence                            01223457899999999874 4788999999999999999999999999999999999999999


Q ss_pred             HHHHhccCchhHHHHHHHHHHHHHCCCCCCCCCC-CChHHHHHHHHHHHhcCCCCCCCchhhhcCCCCCCccccccchhh
Q 022734          145 LFWISQIDGRFRDMVLLVKEWAKAHDINNPKTGT-FNSYSLSLLVLFHFQTCVPAILPPLKDIYPGNLVDDLKGVRANAE  223 (293)
Q Consensus       145 l~~~~~~~~~~r~L~~~iK~wak~~~l~~~~~G~-lsSy~l~lmvi~fLQ~~~p~ilP~l~~l~~~~~~~d~~~~~~~~e  223 (293)
                      ++.|.+.||++|+|++++|+||+++||++++.|| ||||+|++|||+|||++.||+||+||++++....         .+
T Consensus       288 l~~y~~~dprlr~Lvl~vK~Wak~r~Ln~~~~Gg~LsSYsL~lMVI~fLQ~~~ppvLP~Lq~l~~~~~~---------~~  358 (464)
T 3pq1_A          288 LYIYGALDSRVRALVFSVRCWARAHSLTSSIPGAWITNFSLTMMVIFFLQRRSPPILPTLDSLKTLADA---------ED  358 (464)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHTTSSCC--CCSCCHHHHHHHHHHHHHSCC-------CCSHHHHTT---------C-
T ss_pred             HHHHHHhCccHHHHHHHHHHHHHHhCCCccccCCCcCcHHHHHHHHHHHHccCCCcCCChHHhccccCc---------cc
Confidence            9999999999999999999999999999999999 9999999999999999999999999998642110         01


Q ss_pred             HHHHHHhhhhcccccCCccCCCCcchHHHHHHHHHHHhccCcchhhhhhccccccc
Q 022734          224 RQIAEICAFNIARFSSDKYRKINRSSLAHLFVSFLEKVFIPVMFFLLIFAGNAKCS  279 (293)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~n~~sl~~Ll~~Ff~yY~~~~~~~~f~~~~~~~c~  279 (293)
                      ..+.+.|++++..-....+...|++++|+||++||+||++      |||+.++||.
T Consensus       359 ~~~vdg~~~~F~~dl~~l~~~~N~~slgeLL~gFF~yYa~------FDf~~~vIsI  408 (464)
T 3pq1_A          359 KCVIEGNNCTFVRDLSRIKPSQNTETLELLLKEFFEYFGN------FAXXXXXXXX  408 (464)
T ss_dssp             --------------------CCCCCCHHHHHHHHHHHGGG------CCCCCCCCCC
T ss_pred             ceeeccccccccccHhhcCCCCCcCCHHHHHHHHHHHHHh------CCCccccccc
Confidence            1233444443322111224688999999999999999996      9999999988
>4e8f_A Poly(A) RNA polymerase protein CID1; beta polymerase-like nucleotidyl transferase, terminal uridi transferase, UTP, cytoplasmic; 2.60A {Schizosaccharomyces pombe 972h-} PDB: 4e7x_A* 4e80_A Back     alignment and structure
>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae} Back     alignment and structure
>4fh3_A Poly(A) RNA polymerase protein CID1; nucleotidyltransferase, poly(U) polymerase, transferase; 2.00A {Schizosaccharomyces pombe} PDB: 4fh5_A* 4fhp_A* 4fhv_A* 4fhw_A* 4fhy_A* 4fhx_A* 4ep7_A* Back     alignment and structure
>2ikf_A RNA uridylyl transferase; tutase, nucleotidyltransferase, UTP-binding, RNA editing; HET: UTP; 2.00A {Trypanosoma brucei} PDB: 2nom_A* 2q0c_A* 2q0d_A* 2q0e_A* 2q0f_A* 2q0g_A* Back     alignment and structure
>2b4v_A RNA editing complex protein MP57; tbret2, TBMP57, terminal uridylyl transferase, editosome, transferase/RNA binding protein complex; 1.80A {Trypanosoma brucei} SCOP: a.160.1.4 d.218.1.10 PDB: 2b51_A* 2b56_A* Back     alignment and structure
>2hhp_A Poly(A) polymerase; template-independent RNA polymerase, transferase; HET: FLC; 1.80A {Saccharomyces cerevisiae} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1fa0_A* 3c66_A* 2o1p_A 2q66_A* Back     alignment and structure
>1r89_A TRNA nucleotidyltransferase; CCA adding enzyme, incoming nucleotide, nucleotidyltransfera superfamily; HET: CTP; 1.80A {Archaeoglobus fulgidus} SCOP: a.160.1.3 d.218.1.7 d.58.16.2 PDB: 1r8a_A 1r8b_A* 1r8c_A* 1sz1_A* 1tfw_A* 1tfy_A* 1uet_A 1ueu_A* 1uev_A* 2dr5_A 2dr7_A 2dr8_A* 2dr9_A 2dra_A* 2drb_A 2dvi_A* 2zh1_A 2zh2_A 2zh3_A 2zh4_A ... Back     alignment and structure
>1px5_A 2'-5'-oligoadenylate synthetase 1; 5-stranded antiparalel beta sheet, four helix bundle, transferase; HET: YCM; 1.74A {Sus scrofa} SCOP: a.160.1.2 d.218.1.6 Back     alignment and structure
>4at7_A Interleukin enhancer-binding factor 2; transcription, DRPB76, NFAR, ILF3, ILF2, template-free nucleotidyltransferase fold; HET: 1PE; 1.902A {Mus musculus} PDB: 4at8_A* 4at9_A* 4atb_A* Back     alignment and structure
>1no5_A Hypothetical protein HI0073; structural genomics, nucleotidyl transferase structure 2 function project, S2F, unknown function; 1.80A {Haemophilus influenzae} SCOP: d.218.1.5 Back     alignment and structure
>1ylq_A Putative nucleotidyltransferase, hypothetical Pro AF0614; structural genomics, PSI, protein ST initiative; 2.02A {Archaeoglobus fulgidus} SCOP: d.218.1.5 Back     alignment and structure
>1wot_A Putative minimal nucleotidyltransferase; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.218.1.5 Back     alignment and structure
>2rff_A Putative nucleotidyltransferase; NP_343093.1, nucleotidyltransferase domain, structural genomics; HET: MSE; 1.40A {Sulfolobus solfataricus P2} Back     alignment and structure
>4ebj_A Aminoglycoside nucleotidyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 1.60A {Pseudomonas aeruginosa} PDB: 4ebk_A* Back     alignment and structure
>1kny_A Kntase, kanamycin nucleotidyltransferase; antibiotic resistance, plasmid; HET: APC KAN; 2.50A {Staphylococcus aureus} SCOP: a.24.16.1 d.218.1.1 PDB: 1kan_A Back     alignment and structure
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ... Back     alignment and structure
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ... Back     alignment and structure
>3jz0_A Lincosamide nucleotidyltransferase; alpha-beta structure, transferase-antibiotic CO; HET: APC CLY; 2.00A {Enterococcus faecium} PDB: 3jyy_A* Back     alignment and structure
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus} Back     alignment and structure
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A* Back     alignment and structure
>1jaj_A DNA polymerase beta-like protein; CIS peptide, viral protein; HET: DNA; NMR {African swine fever virus} SCOP: d.218.1.2 PDB: 1jqr_A* Back     alignment and structure
>2pbe_A AAD6, aminoglycoside 6-adenylyltransferase; NYSGXRC, aminoglycoside 6-adenyltransferase, PSI-2, structural genomics; 2.65A {Bacillus subtilis} SCOP: a.160.1.5 d.218.1.13 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 293
d2b4va1183 a.160.1.4 (A:289-471) RNA editing terminal uridyl 2e-16
d1q79a2196 d.218.1.3 (A:19-214) Poly(A) polymerase, PAP, N-te 4e-12
d2q66a2197 d.218.1.3 (A:5-201) Poly(A) polymerase, PAP, N-ter 5e-12
>d2b4va1 a.160.1.4 (A:289-471) RNA editing terminal uridyl transferase 2, TUTase 2, RET2 {Trypanosoma brucei [TaxId: 5691]} Length = 183 Back     information, alignment and structure

class: All alpha proteins
fold: PAP/OAS1 substrate-binding domain
superfamily: PAP/OAS1 substrate-binding domain
family: RNA editing terminal uridyl transferase 2, RET2, domain 2
domain: RNA editing terminal uridyl transferase 2, TUTase 2, RET2
species: Trypanosoma brucei [TaxId: 5691]

 Score = 73.4 bits (179), Expect = 2e-16
 Identities = 11/106 (10%), Positives = 27/106 (25%), Gaps = 21/106 (19%)

Query: 154 RFRDMVLLVKEWAKAHDINNPKTGTFNSYSLSLLVLFHFQTCVPAILPPLKDIYPGNLVD 213
             R   + VK W KA ++         SY+++++ +++       +      +     + 
Sbjct: 3   AARHTAMAVKAWGKATNVGAGSGAMLTSYAVTVMFIYYLLVTRQVLWVDPWSLPHPAHLP 62

Query: 214 DLKGVRANAERQIAEICAFNIARFSSDKYRKINRSSLAHLFVSFLE 259
                                           + + L  L   F  
Sbjct: 63  RYPDF---------------------SPLYDCDPTELGRLLHGFFI 87
>d1q79a2 d.218.1.3 (A:19-214) Poly(A) polymerase, PAP, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]} Length = 196 Back     information, alignment and structure
>d2q66a2 d.218.1.3 (A:5-201) Poly(A) polymerase, PAP, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 197 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query293
d2b4va1183 RNA editing terminal uridyl transferase 2, TUTase 99.89
d2q66a2197 Poly(A) polymerase, PAP, N-terminal domain {Baker' 99.87
d1q79a2196 Poly(A) polymerase, PAP, N-terminal domain {Cow (B 99.85
d2b4va2259 RNA editing terminal uridyl transferase 2, TUTase 98.95
d1r89a2142 tRNA nucleotidyltransferase, N-terminal domain {Ar 98.85
d1no5a_100 Hypothetical protein HI0073 {Haemophilus influenza 98.79
d2q66a1150 Poly(A) polymerase, PAP, middle domain {Baker's ye 98.66
d1q79a1150 Poly(A) polymerase, PAP, middle domain {Cow (Bos t 98.65
d1ylqa190 Putative nucleotidyltransferase AF0614 {Archaeon A 98.28
d1px5a2200 2'-5'-oligoadenylate synthetase 1, OAS1, N-termina 97.79
d1wota_98 Unnamed putative nucleotidyltransferase {Thermus t 97.71
d1knya2125 Kanamycin nucleotidyltransferase (KNTase), N-termi 97.34
d1jmsa4208 Terminal deoxynucleotidyl transferase {Mouse (Mus 96.0
d2bcqa3190 DNA polymerase lambda {Human (Homo sapiens) [TaxId 95.98
d2fmpa3187 DNA polymerase beta, catalytic (31 kD) fragment {H 95.59
d1r89a1115 tRNA nucleotidyltransferase, second domain {Archae 94.99
d1px5a1146 2'-5'-oligoadenylate synthetase 1, OAS1, second do 94.3
d2pbea2135 Aminoglycoside 6-adenylyltransferase AadK {Bacillu 92.97
>d2b4va1 a.160.1.4 (A:289-471) RNA editing terminal uridyl transferase 2, TUTase 2, RET2 {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
class: All alpha proteins
fold: PAP/OAS1 substrate-binding domain
superfamily: PAP/OAS1 substrate-binding domain
family: RNA editing terminal uridyl transferase 2, RET2, domain 2
domain: RNA editing terminal uridyl transferase 2, TUTase 2, RET2
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.89  E-value=5.6e-24  Score=177.94  Aligned_cols=108  Identities=11%  Similarity=0.133  Sum_probs=83.7

Q ss_pred             CchhHHHHHHHHHHHHHCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCchhhhcCCCCCCccccccchhhHHHHHHhh
Q 022734          152 DGRFRDMVLLVKEWAKAHDINNPKTGTFNSYSLSLLVLFHFQTCVPAILPPLKDIYPGNLVDDLKGVRANAERQIAEICA  231 (293)
Q Consensus       152 ~~~~r~L~~~iK~wak~~~l~~~~~G~lsSy~l~lmvi~fLQ~~~p~ilP~l~~l~~~~~~~d~~~~~~~~e~~~~~~~~  231 (293)
                      .|++|+|+++||+|||.+||++++.||||||+|++|||||||++.++++|+.+++........                 
T Consensus         1 ~P~~R~l~~~vK~Wak~~~i~~~~~G~lsSYal~lmvi~fLQ~~~~~~~~~~~~~~~~~~~~~-----------------   63 (183)
T d2b4va1           1 PVAARHTAMAVKAWGKATNVGAGSGAMLTSYAVTVMFIYYLLVTRQVLWVDPWSLPHPAHLPR-----------------   63 (183)
T ss_dssp             CTTHHHHHHHHHHHHHTCC-----CCSSCHHHHHHHHHHHHHHTTSSCCCCGGGSCCGGGSCS-----------------
T ss_pred             CcceeeHHHHHHHHHHHcCCCCccCCCchHHHHHHHHHHHHHhcCCCCCCCHHHhcccccccc-----------------
Confidence            389999999999999999999999999999999999999999998888888877643211000                 


Q ss_pred             hhcccccCCccCCCCcchHHHHHHHHHHHhccCcchhhhhhccccccccccchh
Q 022734          232 FNIARFSSDKYRKINRSSLAHLFVSFLEKVFIPVMFFLLIFAGNAKCSLDESRM  285 (293)
Q Consensus       232 ~~~~~~~~~~~~~~n~~sl~~Ll~~Ff~yY~~~~~~~~f~~~~~~~c~~~~~~~  285 (293)
                          ........+.|.+++|+||.+||+||+.+     |||+.++||+..|+..
T Consensus        64 ----~~~~~~~~~~~~~sl~~Ll~~FF~~Y~~~-----fd~~~~~Isi~~g~~~  108 (183)
T d2b4va1          64 ----YPDFSPLYDCDPTELGRLLHGFFIFYAHH-----FDYEREVVSLNRNRRS  108 (183)
T ss_dssp             ----SCCCCCCCCCCHHHHHHHHHHHHHHHHHS-----SCTTTEEBCSSSSSCE
T ss_pred             ----ccccccccCCCCCCHHHHHHHHHHHhccc-----cCHHHceeeeccCCcc
Confidence                00112346788999999999999999976     9999999998777654
>d2q66a2 d.218.1.3 (A:5-201) Poly(A) polymerase, PAP, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q79a2 d.218.1.3 (A:19-214) Poly(A) polymerase, PAP, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2b4va2 d.218.1.10 (A:30-288) RNA editing terminal uridyl transferase 2, TUTase 2, RET2 {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d1r89a2 d.218.1.7 (A:1-142) tRNA nucleotidyltransferase, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1no5a_ d.218.1.5 (A:) Hypothetical protein HI0073 {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d2q66a1 a.160.1.1 (A:202-351) Poly(A) polymerase, PAP, middle domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q79a1 a.160.1.1 (A:215-364) Poly(A) polymerase, PAP, middle domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1ylqa1 d.218.1.5 (A:1-90) Putative nucleotidyltransferase AF0614 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1px5a2 d.218.1.6 (A:1-200) 2'-5'-oligoadenylate synthetase 1, OAS1, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1wota_ d.218.1.5 (A:) Unnamed putative nucleotidyltransferase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1knya2 d.218.1.1 (A:1-125) Kanamycin nucleotidyltransferase (KNTase), N-terminal domain {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1jmsa4 d.218.1.2 (A:303-510) Terminal deoxynucleotidyl transferase {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2bcqa3 d.218.1.2 (A:386-575) DNA polymerase lambda {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fmpa3 d.218.1.2 (A:149-335) DNA polymerase beta, catalytic (31 kD) fragment {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1r89a1 a.160.1.3 (A:143-257) tRNA nucleotidyltransferase, second domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1px5a1 a.160.1.2 (A:201-346) 2'-5'-oligoadenylate synthetase 1, OAS1, second domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2pbea2 d.218.1.13 (A:1-135) Aminoglycoside 6-adenylyltransferase AadK {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure