Citrus Sinensis ID: 022751


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290--
MRLQQFLKLDYAMSFLRSEKLYLLLCCFWILILTDICYMTVMAAELVRVARNESKGEPERLRFSYYTAGTGGAGPTILATSFLLLGEEVVAYNKGEEITLEPYSGMLSVDFGKGIGRKDVFLLNLPEVRSAREVLGVPTVSARFGTAPFFWNWGMVTMQRLFPAEYLRDRSKVQQLVQLFDPVVRAFDGIAGERVSMRVDLECTDGRNTVGIFSHRRLSVSVGTAIAAFVLAVLEGATQPGVWFPEEPEGIAIEAREVLLKRASQGTINFVMNKAPWMVETEPKELGLGIYI
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEEEcccccHHHHHHHHHHHHccEEEEEEccEEEEEccccccEEEEcccccccEEEEEEcccccccccccccccEEEEEcccccHHHHHHHHHHHHHcHHHHHccHHHHHHHHHHHHHHHHHcccccccEEEEEEEEEEccccEEEEEEEccccHHHHHHHHHHHHHHHHcccccccEEccccccccHHHHHHHHHHHHHcccEEEEEEccccccccccEEccccccc
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEEEccccccHHHHHHHHHHccccEEEEEcccEEEEccccccEEEEccccccccEEEEEcccccccHHHHccccEEEEEEcccHHHHHHHHHHHHHHccHHHHHcHHHHHHHHHHcHHHHHHHHHccccEEEEEEEEEcccccEEEEEEEcccHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHcccEEEEEcccccEEEccccEEEEEEEc
MRLQQFLKLDYAMSFLRSEKLYLLLCCFWILILTDICYMTVMAAELVRVArneskgeperlrfsyytagtggagpTILATSFLLLGEEvvaynkgeeitlepysgmlsvdfgkgigrkdvfllnlpevrsarevlgvptvsarfgtapffwnwgmvtmqrlfpaeylrdRSKVQQLVQLFDPVVRAFDGIAGERVSMRVDlectdgrntvgifshrrlSVSVGTAIAAFVLAVLEgatqpgvwfpeepegIAIEAREVLLKRASqgtinfvmnkapwmvetepkelglgiyi
MRLQQFLKLDYAMSFLRSEKLYLLLCCFWILILTDICYMTVMAAELVRVarneskgeperLRFSYYTAGTGGAGPTILATSFLLLGEEVVAYNKGEEITLEPYSGMLSVDFGKGIGRKDVFLLNLPEVrsarevlgvptvsarFGTAPFFWNWGMVTMQRLFPAEYLRDRSKVQQLVQLFDPVVRAFDGIAGERVSMRVDLECTDGRNTVGIFSHRRLSVSVGTAIAAFVLAVLEGATQPGVWFPEEPEGIAIEAREVLLKRASQGTinfvmnkapwmvetepkelglgiyi
MRLQQFLKLDYAMSFLRSEKLYLLLCCFWILILTDICYMTVMAAELVRVARNESKGEPERLRFSyytagtggagPTILATSFLLLGEEVVAYNKGEEITLEPYSGMLSVDFGKGIGRKDVFLLNLPEVRSAREVLGVPTVSARFGTAPFFWNWGMVTMQRLFPAEYLRDRSKVQQLVQLFDPVVRAFDGIAGERVSMRVDLECTDGRNTVGIFSHRRLSVSVGTAIAAFVLAVLEGATQPGVWFPEEPEGIAIEAREVLLKRASQGTINFVMNKAPWMVETEPKELGLGIYI
****QFLKLDYAMSFLRSEKLYLLLCCFWILILTDICYMTVMAAELVRVAR********RLRFSYYTAGTGGAGPTILATSFLLLGEEVVAYNKGEEITLEPYSGMLSVDFGKGIGRKDVFLLNLPEVRSAREVLGVPTVSARFGTAPFFWNWGMVTMQRLFPAEYLRDRSKVQQLVQLFDPVVRAFDGIAGERVSMRVDLECTDGRNTVGIFSHRRLSVSVGTAIAAFVLAVLEGATQPGVWFPEEPEGIAIEAREVLLKRASQGTINFVMNKAPWMVETEP*ELGLG***
****QFLKLDYAMSFLRSEKLYLLLCCFWILILTDICYMTVMAAELV*********EPERLRFSYYTAGTGGAGPTILATSFLLLGEEVVAYNKGEEITLEPYSGMLSVDFGKGIGRKDVFLLNLPEVRSAREVLGVPTVSARFGTAPFFWNWGMVTMQRLFPAEYLRDRSKVQQLVQLFDPVVRAFDGIAGERVSMRVDLECTDGRNTVGIFSHRRLSVSVGTAIAAFVLAVLEGATQPGVWFPEEPEGIAIEAREVLLKRASQGTINFVMNKAPWMVETEPKELGLGIYI
MRLQQFLKLDYAMSFLRSEKLYLLLCCFWILILTDICYMTVMAAELVRVARNESKGEPERLRFSYYTAGTGGAGPTILATSFLLLGEEVVAYNKGEEITLEPYSGMLSVDFGKGIGRKDVFLLNLPEVRSAREVLGVPTVSARFGTAPFFWNWGMVTMQRLFPAEYLRDRSKVQQLVQLFDPVVRAFDGIAGERVSMRVDLECTDGRNTVGIFSHRRLSVSVGTAIAAFVLAVLEGATQPGVWFPEEPEGIAIEAREVLLKRASQGTINFVMNKAPWMVETEPKELGLGIYI
*RLQQFLKLDYAMSFLRSEKLYLLLCCFWILILTDICYMTVMAAELVRVARNESKGEPERLRFSYYTAGTGGAGPTILATSFLLLGEEVVAYNKGEEITLEPYSGMLSVDFGKGIGRKDVFLLNLPEVRSAREVLGVPTVSARFGTAPFFWNWGMVTMQRLFPAEYLRDRSKVQQLVQLFDPVVRAFDGIAGERVSMRVDLECTDGRNTVGIFSHRRLSVSVGTAIAAFVLAVLEGATQPGVWFPEEPEGIAIEAREVLLKRASQGTINFVMNKAPWMVETEPKELGLGIYI
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MRLQQFLKLDYAMSFLRSEKLYLLLCCFWILILTDICYMTVMAAELVRVARNESKGEPERLRFSYYTAGTGGAGPTILATSFLLLGEEVVAYNKGEEITLEPYSGMLSVDFGKGIGRKDVFLLNLPEVRSAREVLGVPTVSARFGTAPFFWNWGMVTMQRLFPAEYLRDRSKVQQLVQLFDPVVRAFDGIAGERVSMRVDLECTDGRNTVGIFSHRRLSVSVGTAIAAFVLAVLEGATQPGVWFPEEPEGIAIEAREVLLKRASQGTINFVMNKAPWMVETEPKELGLGIYI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query292
359479459 422 PREDICTED: uncharacterized protein LOC10 0.866 0.599 0.841 1e-126
325461580 430 putative astaxanthin synthase [Carica pa 0.866 0.588 0.849 1e-126
449444893 416 PREDICTED: uncharacterized protein LOC10 0.866 0.608 0.845 1e-125
255544942 422 conserved hypothetical protein [Ricinus 0.866 0.599 0.830 1e-124
224106217 431 predicted protein [Populus trichocarpa] 0.866 0.587 0.822 1e-124
164521187 396 unknown, partial [Nuphar advena] 0.866 0.638 0.814 1e-120
357474051 420 Saccharopine dehydrogenase family protei 0.863 0.6 0.803 1e-120
356543827 429 PREDICTED: uncharacterized protein LOC10 0.863 0.587 0.818 1e-119
356538501 429 PREDICTED: uncharacterized protein LOC10 0.863 0.587 0.786 1e-116
18403077 428 Saccharopine dehydrogenase [Arabidopsis 0.828 0.565 0.785 1e-113
>gi|359479459|ref|XP_002274681.2| PREDICTED: uncharacterized protein LOC100251769 [Vitis vinifera] gi|297734956|emb|CBI17190.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  456 bits (1172), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 213/253 (84%), Positives = 238/253 (94%)

Query: 40  TVMAAELVRVARNESKGEPERLRFSYYTAGTGGAGPTILATSFLLLGEEVVAYNKGEEIT 99
            VMAAELVRVAR+ES+G+PERLRF YYTAGTGGAGPTILATSFLLLGEEVVAYNKGE+I 
Sbjct: 170 NVMAAELVRVARSESQGKPERLRFYYYTAGTGGAGPTILATSFLLLGEEVVAYNKGEKIK 229

Query: 100 LEPYSGMLSVDFGKGIGRKDVFLLNLPEVRSAREVLGVPTVSARFGTAPFFWNWGMVTMQ 159
           L+PYSGML++DFGKGIG++DV+LL+LPEVRSA E+LGVPTVSARFGTAPFFWNWGM  M 
Sbjct: 230 LKPYSGMLNIDFGKGIGKRDVYLLHLPEVRSAHEILGVPTVSARFGTAPFFWNWGMEAMT 289

Query: 160 RLFPAEYLRDRSKVQQLVQLFDPVVRAFDGIAGERVSMRVDLECTDGRNTVGIFSHRRLS 219
            L P E+LRDRSKVQ+LVQLFDP+VRA DGIAGERVSMRVDLEC+DGRNTVG+FSHRRLS
Sbjct: 290 NLLPVEFLRDRSKVQELVQLFDPIVRAMDGIAGERVSMRVDLECSDGRNTVGLFSHRRLS 349

Query: 220 VSVGTAIAAFVLAVLEGATQPGVWFPEEPEGIAIEAREVLLKRASQGTINFVMNKAPWMV 279
           VSVG A AAF LAVLEG+TQPGVWFPEEPEGIAI+AR++LLKRA+QGTINF+MNK PWMV
Sbjct: 350 VSVGFATAAFALAVLEGSTQPGVWFPEEPEGIAIDARDILLKRAAQGTINFIMNKPPWMV 409

Query: 280 ETEPKELGLGIYI 292
           ET+PKELGLGIY+
Sbjct: 410 ETDPKELGLGIYV 422




Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|325461580|gb|ADZ14892.1| putative astaxanthin synthase [Carica papaya] Back     alignment and taxonomy information
>gi|449444893|ref|XP_004140208.1| PREDICTED: uncharacterized protein LOC101209190 [Cucumis sativus] gi|449482525|ref|XP_004156312.1| PREDICTED: uncharacterized LOC101209190 [Cucumis sativus] Back     alignment and taxonomy information
>gi|255544942|ref|XP_002513532.1| conserved hypothetical protein [Ricinus communis] gi|223547440|gb|EEF48935.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|224106217|ref|XP_002314088.1| predicted protein [Populus trichocarpa] gi|222850496|gb|EEE88043.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|164521187|gb|ABY60455.1| unknown, partial [Nuphar advena] Back     alignment and taxonomy information
>gi|357474051|ref|XP_003607310.1| Saccharopine dehydrogenase family protein expressed [Medicago truncatula] gi|355508365|gb|AES89507.1| Saccharopine dehydrogenase family protein expressed [Medicago truncatula] Back     alignment and taxonomy information
>gi|356543827|ref|XP_003540361.1| PREDICTED: uncharacterized protein LOC100781532 [Glycine max] Back     alignment and taxonomy information
>gi|356538501|ref|XP_003537742.1| PREDICTED: uncharacterized protein LOC100811957 [Glycine max] Back     alignment and taxonomy information
>gi|18403077|ref|NP_564570.1| Saccharopine dehydrogenase [Arabidopsis thaliana] gi|14517416|gb|AAK62598.1| At1g50450/F11F12_20 [Arabidopsis thaliana] gi|20453277|gb|AAM19877.1| At1g50450/F11F12_20 [Arabidopsis thaliana] gi|332194431|gb|AEE32552.1| Saccharopine dehydrogenase [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query292
TAIR|locus:2008041428 AT1G50450 [Arabidopsis thalian 0.863 0.588 0.742 7.9e-101
TAIR|locus:2008041 AT1G50450 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1000 (357.1 bits), Expect = 7.9e-101, P = 7.9e-101
 Identities = 187/252 (74%), Positives = 217/252 (86%)

Query:    41 VMAAELVRVARNESKGEPERLRFSXXXXXXXXXXPTILATSFLLLGEEVVAYNKGEEITL 100
             VMAAE+V  AR+E KG+PE+LRFS          PTILATSFLLLGEEV AY +GE++ L
Sbjct:   177 VMAAEMVAAARSEDKGKPEKLRFSYYTAGTGGAGPTILATSFLLLGEEVTAYKQGEKVKL 236

Query:   101 EPYSGMLSVDFGKGIGRKDVFLLNLPEVRSAREVLGVPTVSARFGTAPFFWNWGMVTMQR 160
              PYSGM++VDFGKGI ++DV+LLNLPEVRS  EVLGVPTV ARFGTAPFFWNWGM  M +
Sbjct:   237 RPYSGMITVDFGKGIRKRDVYLLNLPEVRSTHEVLGVPTVVARFGTAPFFWNWGMEIMTK 296

Query:   161 LFPAEYLRDRSKVQQLVQLFDPVVRAFDGIAGERVSMRVDLECTDGRNTVGIFSHRRLSV 220
             L P+E LRDR+KVQQ+V+LFDPVVRA DG AGERVSMRVDLEC+DGR TVG+FSH++LSV
Sbjct:   297 LLPSEVLRDRTKVQQMVELFDPVVRAMDGFAGERVSMRVDLECSDGRTTVGLFSHKKLSV 356

Query:   221 SVGTAIAAFVLAVLEGATQPGVWFPEEPEGIAIEAREVLLKRASQGTINFVMNKAPWMVE 280
             SVG + AAFV A+LEG+TQPGVWFPEEP+GIA+EAREVLLKRASQGT NF++NK PWMVE
Sbjct:   357 SVGVSTAAFVAAMLEGSTQPGVWFPEEPQGIAVEAREVLLKRASQGTFNFILNKPPWMVE 416

Query:   281 TEPKELGLGIYI 292
             TEPKE+ LGIY+
Sbjct:   417 TEPKEVVLGIYV 428


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.140   0.418    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      292       282   0.00083  115 3  11 22  0.44    33
                                                     33  0.42    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  601 (64 KB)
  Total size of DFA:  183 KB (2105 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.67u 0.10s 20.77t   Elapsed:  00:00:03
  Total cpu time:  20.67u 0.10s 20.77t   Elapsed:  00:00:03
  Start:  Mon May 20 16:21:23 2013   End:  Mon May 20 16:21:26 2013


GO:0000166 "nucleotide binding" evidence=IEA
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0009507 "chloroplast" evidence=IDA
GO:0009534 "chloroplast thylakoid" evidence=IDA

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer2.5.1.44LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
gw1.IX.3638.1
hypothetical protein (399 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.V.3086.1
hypothetical protein (287 aa)
      0.459
gw1.XIII.1190.1
SubName- Full=Putative uncharacterized protein; (300 aa)
      0.421

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query292
pfam03435380 pfam03435, Saccharop_dh, Saccharopine dehydrogenas 3e-05
>gnl|CDD|217556 pfam03435, Saccharop_dh, Saccharopine dehydrogenase Back     alignment and domain information
 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 29/175 (16%), Positives = 51/175 (29%), Gaps = 24/175 (13%)

Query: 95  GEEITLEPYSGMLSVDFGKGIGRKDVFLLNLPEVRSAREVLGVPTVSARFG-TAPFFWNW 153
           G+ + +   S   ++ F  GIG    + + L    +   V      +            +
Sbjct: 189 GKWVEVGWGSHERTIPFPYGIGPGYAYEIYLNRPGTLTRVRSWLPEADGVLFGTIRIPGY 248

Query: 154 GMVTMQRLFPAEYLRD------RSKVQQLVQLFDPVVRAFDGIAGERVSMRVDLE--CTD 205
             V ++ L     LR          +  L  L +            +V + V++E     
Sbjct: 249 LTV-IKLLGDLGLLRPTVHYAYIPPLDALKSLLESPASLGPEEQD-KVRIGVEVEGIDKL 306

Query: 206 GRNTVGIFSH-----------RRL-SVSVGTAIAAFVLAVLEGA-TQPGVWFPEE 247
           G    G   +           R     + GT        +  G   +PGV  PEE
Sbjct: 307 GVLLTGHIYNAYGSGLSIEEGRSAMPYTTGTPAQVAAALLAGGEWAKPGVVEPEE 361


This family comprised of three structural domains that can not be separated in the linear sequence. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase. The saccharopine dehydrogenase can also function as a saccharopine reductase. Length = 380

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 292
COG1748389 LYS9 Saccharopine dehydrogenase and related protei 99.95
PF03435386 Saccharop_dh: Saccharopine dehydrogenase ; InterPr 99.85
COG3268382 Uncharacterized conserved protein [Function unknow 99.33
PLN028191042 lysine-ketoglutarate reductase/saccharopine dehydr 98.69
KOG2733423 consensus Uncharacterized membrane protein [Functi 93.08
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] Back     alignment and domain information
Probab=99.95  E-value=7.8e-28  Score=228.42  Aligned_cols=227  Identities=18%  Similarity=0.159  Sum_probs=182.9

Q ss_pred             hhhhhhhHHHHHHHHHHHhhhcchhhhhHHHHHHHHhhcCCCCCceeEEEEEecCCCCCC------ch--hhhhhhhhcc
Q 022751           15 FLRSEKLYLLLCCFWILILTDICYMTVMAAELVRVARNESKGEPERLRFSYYTAGTGGAG------PT--ILATSFLLLG   86 (292)
Q Consensus        15 ~~~~~~~~~~~~~g~~~~g~~PGlSn~lA~~aa~~l~~~~~~~ve~Idi~~~~~g~g~~G------~~--~~~~~l~~l~   86 (292)
                      |.+++.+...++++...+|++||+||++|++++++++    |++++|||++  .+.++++      ..  ++|++|.++.
T Consensus       106 ~~~~~~a~~Agit~v~~~G~dPGi~nv~a~~a~~~~~----~~i~si~iy~--g~~g~~~~~~l~ya~tws~e~~l~e~~  179 (389)
T COG1748         106 WKLDEEAKKAGITAVLGCGFDPGITNVLAAYAAKELF----DEIESIDIYV--GGLGEHGDNPLGYATTWSPEINLREYT  179 (389)
T ss_pred             hhhhHHHHHcCeEEEcccCcCcchHHHHHHHHHHHhh----ccccEEEEEE--ecCCCCCCCCccceeeecHHHhHHHhc
Confidence            7777777777777777788899999999999996554    6999999998  4555555      33  7899999999


Q ss_pred             ceeeeeccCceEEeecCCceeeeecCCCCCcceeEeecCccccccccccc-cceeeeeccCC-ccchhhhHHHhhhcCch
Q 022751           87 EEVVAYNKGEEITLEPYSGMLSVDFGKGIGRKDVFLLNLPEVRSAREVLG-VPTVSARFGTA-PFFWNWGMVTMQRLFPA  164 (292)
Q Consensus        87 ~p~~v~~dGr~~~v~~~s~~r~vdFp~~~G~r~~~~~~~pD~~Tlp~~~g-i~~V~~~~g~~-~~~~~~ll~~l~~lg~~  164 (292)
                      .|+.+|+||+|++++|+++.+.++||. +|...+|.++|+|+.||.++++ +.++++|++|. +.++++ +++|+.+|  
T Consensus       180 ~p~~~~~~Gk~~~v~~~~~~~~~~~~~-~G~~~~y~~~~~el~sL~~~i~~~~~~~~~~t~r~~g~~~~-i~~L~~lG--  255 (389)
T COG1748         180 RPARYWENGKWVEVDPLEEREVFEFPV-IGYGDVYAFYHDELRSLVKTIPGVVRTRFEMTFRYPGHLEV-IKALRDLG--  255 (389)
T ss_pred             CceEEEeCCEEEEecCcccccccccCC-CCceeEEecCCccHHHHHHhCcccceeeEEeecCcccHHHH-HHHHHHcC--
Confidence            999999999999999999999999996 7999999999999999999997 78899999999 888887 57888886  


Q ss_pred             hhccchh--------hHHHHHHhhhhhhhhhcccccceeeeeeeeee-cCCCceeee---ee---------eeeeeEeeh
Q 022751          165 EYLRDRS--------KVQQLVQLFDPVVRAFDGIAGERVSMRVDLEC-TDGRNTVGI---FS---------HRRLSVSVG  223 (292)
Q Consensus       165 ~LL~~~~--------~~~~la~l~~~l~~~~~~~~g~~~~m~v~v~g-~~G~~~~~~---~~---------~~~~~~~Tg  223 (292)
                       +++.++        +.++++++........+.+ .+-+.|.+.|+| |||+....+   ++         +..++++||
T Consensus       256 -ll~~~~v~~~~~i~p~eflk~vl~~~~s~~~~~-~d~t~i~v~v~G~kdG~~~~~~y~~~~~~~~~~~~~~~ais~ttg  333 (389)
T COG1748         256 -LLSREPVKVQQEIVPLEFLKAVLPDPLSLAPDY-KDVTVIGVEVKGTKDGRDKTVFYNVKDHAEAYSEVGSSAISYTTG  333 (389)
T ss_pred             -CCcccccccccccchHHHHHHhcccccccCCCc-CceEEEEEEEEEEEcCeeeEEEecchhhHHHhhccccceeehhcc
Confidence             665542        2455655443332222222 444579999995 588877332   22         335789999


Q ss_pred             hHHHHHHHHHHhCC-CCCcccccCCCCccch
Q 022751          224 TAIAAFVLAVLEGA-TQPGVWFPEEPEGIAI  253 (292)
Q Consensus       224 ~~aa~~A~~ll~G~-~~~Gv~~PE~~~g~~~  253 (292)
                      .+|++.|+.|+.|+ ..+||++||++...+-
T Consensus       334 ~pa~~~a~ll~~g~~~~~Gv~~~E~l~~~~~  364 (389)
T COG1748         334 VPAAIGAELLAEGEWETPGVVNPEELGPDPF  364 (389)
T ss_pred             ccHHHHHHHHHcCCCCcCcEecHHHhCCChh
Confidence            99999999999999 8999999999996663



>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase Back     alignment and domain information
>COG3268 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase Back     alignment and domain information
>KOG2733 consensus Uncharacterized membrane protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query292
2z2v_A365 Hypothetical protein PH1688; L-lysine dehydrogenas 1e-04

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query292
4ina_A405 Saccharopine dehydrogenase; structural genomics, P 99.95
2z2v_A365 Hypothetical protein PH1688; L-lysine dehydrogenas 99.88
3abi_A365 Putative uncharacterized protein PH1688; L-lysine 99.8
2axq_A467 Saccharopine dehydrogenase; rossmann fold variant, 99.29
1ff9_A450 Saccharopine reductase; lysine biosynthesis, alpha 99.2
2ph5_A480 Homospermidine synthase; alpha-beta protein, struc 98.85
>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} Back     alignment and structure
Probab=99.95  E-value=4.4e-28  Score=232.35  Aligned_cols=208  Identities=18%  Similarity=0.183  Sum_probs=165.8

Q ss_pred             HHHhhhcchhhhhHHHHHHHHhhcCCCCCceeEEEEEecCCCCCCc-----hhhhhhhhhccceeeeeccCceEEeecCC
Q 022751           30 ILILTDICYMTVMAAELVRVARNESKGEPERLRFSYYTAGTGGAGP-----TILATSFLLLGEEVVAYNKGEEITLEPYS  104 (292)
Q Consensus        30 ~~~g~~PGlSn~lA~~aa~~l~~~~~~~ve~Idi~~~~~g~g~~G~-----~~~~~~l~~l~~p~~v~~dGr~~~v~~~s  104 (292)
                      .++|++||++|++++++++    +.++++++|+|+.+.++  +.|.     -++++++++++.|+.+|+||+|+++|+++
T Consensus       138 ~g~G~~PG~~~l~a~~~~~----~~~~~i~~i~i~~~~gg--~~g~~~~~~~sp~~~~~~~~~~~~~~~~G~~~~~~~~~  211 (405)
T 4ina_A          138 LGSGFDPGVTNVFCAYAQK----HYFDEIHEIDILDCNAG--DHGYPFATNFNPEINLREVSSKGRYWENGEWIETEPME  211 (405)
T ss_dssp             ECCBTTTBHHHHHHHHHHH----HTCSEEEEEEEEEEECC--BCSSSSCCSSCHHHHHHHTTSCEEEEETTEEEEESTTC
T ss_pred             EcCCCCccHHHHHHHHHHH----hccCcccEEEEEEecCC--CCCccceeeeCHHHHHHHhcCCcEEEECCEEEEecCCc
Confidence            3455799999999999994    35679999999874433  3332     24678889999999999999999999999


Q ss_pred             ceeeeecCCCCCcceeEeecCccccccccccc-cceeeeeccCCccchhhhHHHhhhcCchhhccchh---------hHH
Q 022751          105 GMLSVDFGKGIGRKDVFLLNLPEVRSAREVLG-VPTVSARFGTAPFFWNWGMVTMQRLFPAEYLRDRS---------KVQ  174 (292)
Q Consensus       105 ~~r~vdFp~~~G~r~~~~~~~pD~~Tlp~~~g-i~~V~~~~g~~~~~~~~ll~~l~~lg~~~LL~~~~---------~~~  174 (292)
                      +.+.++||. +|++.+|+++|||+.|++++++ +++|+||++|.+.+.+. +++|+++|   |++..+         +.+
T Consensus       212 ~~~~~~fp~-~G~~~~y~~~~~e~~tl~~~~~~~~~v~~~~~~~~~~~~~-~~~L~~lG---l~~~~~v~~~g~~v~p~~  286 (405)
T 4ina_A          212 IMQVWDYPE-VGPKDSYLLYHEELESLVRNIKGLKRIRFFMTFGQSYLTH-MRCLENVG---MLRIDEIEVNGCKVVPIQ  286 (405)
T ss_dssp             CEEEEEETT-TEEEEEEEECCTHHHHHHHHSTTCCEEEEEEECCHHHHHH-HHHHHHHT---TTCCSCEEETTEEECHHH
T ss_pred             eeEEEECCC-CceeeEEEeCCCcHHHHHhhCCCcceEEeecccCHHHHHH-HHHHHHcC---CCCCCceeeCCceecHHH
Confidence            999999996 9999999999999999999996 79999999999999987 46778886   555332         345


Q ss_pred             HHHHhhhhhhhhhcccccceeeeeeeeee-cCCCce----eeeeeeee---------eeEeehhHHHHHHHHHHhCC-CC
Q 022751          175 QLVQLFDPVVRAFDGIAGERVSMRVDLEC-TDGRNT----VGIFSHRR---------LSVSVGTAIAAFVLAVLEGA-TQ  239 (292)
Q Consensus       175 ~la~l~~~l~~~~~~~~g~~~~m~v~v~g-~~G~~~----~~~~~~~~---------~~~~Tg~~aa~~A~~ll~G~-~~  239 (292)
                      +|+.+......+.+. ..+...|++.++| +||++.    +.+++|.+         ++++||.|++++|+++++|+ ..
T Consensus       287 ~l~~~l~~~~~~~~~-~~d~~~i~~~v~g~~~G~~~~~~~~~~~~~~~~~~~~~~~a~~~ttg~p~~i~a~li~~G~~~~  365 (405)
T 4ina_A          287 VLKALLPDPASLASR-TKGKTNIGCYIKGIKEGKARTIYIYNVCDHESCYREVNAQAISYTTGVPAMIGAKLMLEGKWSG  365 (405)
T ss_dssp             HHHHHSCCHHHHTTT-CBSEEEEEEEEEEEETTEEEEEEEEEEEEHHHHHHHHSSCHHHHHHHHHHHHHHHHHHTTSSCC
T ss_pred             HHHHhcchhhccCCC-CCCeEEEEEEEEEEECCeEEEEEEEEEeccccccccccceEEEeccChhHHHHHHHHhCCccCC
Confidence            666544333233333 3455679999995 689866    34566543         68999999999999999999 89


Q ss_pred             CcccccCCCC
Q 022751          240 PGVWFPEEPE  249 (292)
Q Consensus       240 ~Gv~~PE~~~  249 (292)
                      +||+.||+++
T Consensus       366 ~Gv~~~e~~~  375 (405)
T 4ina_A          366 KGVFNMEELD  375 (405)
T ss_dssp             SEEEEGGGSC
T ss_pred             CceecccccC
Confidence            9999999975



>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} Back     alignment and structure
>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A Back     alignment and structure
>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query292
d1e5qa2267 Saccharopine reductase {Rice blast fungus (Magnapo 96.37
>d1e5qa2 d.81.1.2 (A:125-391) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: Homoserine dehydrogenase-like
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=96.37  E-value=0.0022  Score=55.50  Aligned_cols=121  Identities=8%  Similarity=-0.049  Sum_probs=76.2

Q ss_pred             hcchhhhhHHHHHHHHhhcCCCCCceeEEEEEecCCCCC-Cc---------hhhhhhhhhccceeeeeccCceEEeecC-
Q 022751           35 DICYMTVMAAELVRVARNESKGEPERLRFSYYTAGTGGA-GP---------TILATSFLLLGEEVVAYNKGEEITLEPY-  103 (292)
Q Consensus        35 ~PGlSn~lA~~aa~~l~~~~~~~ve~Idi~~~~~g~g~~-G~---------~~~~~~l~~l~~p~~v~~dGr~~~v~~~-  103 (292)
                      |||+.+++|..+.+++. +.-..|+++..+.  +|.-.. .+         =+++-++.....|+.+.+||+.++|++. 
T Consensus         2 dPGidhm~A~~~i~~~~-~~~g~i~~f~s~c--GGLp~p~~~~np~~YkfsWsp~gvi~~~~~~A~~~~~G~~~~v~~~~   78 (267)
T d1e5qa2           2 DPGIDHLYAIKTIEEVH-AAGGKIKTFLSYC--GGLPAPESSDNPLGYKFSWSSRGVLLALRNAASFYKDGKVTNVAGPE   78 (267)
T ss_dssp             TTBHHHHHHHHHHHHHH-HTTCEEEEEEEEE--EEEECGGGCCSTTSCCBSSCHHHHHHHTTCCEEEEETTEEEEECGGG
T ss_pred             CCcHHHHHHHHHHHHHH-hcCCcEEEEEEEe--cCccCCCCCCCCccceEEeccchhHHHhcCcceeeeCCeEEEECCHH
Confidence            89999999999999886 4434677777764  554211 11         1567778888899999999999999994 


Q ss_pred             --CceeeeecCCCCCcceeEeecCccccccccccc---cceeeeeccCCccchhhhHHHhhhcC
Q 022751          104 --SGMLSVDFGKGIGRKDVFLLNLPEVRSAREVLG---VPTVSARFGTAPFFWNWGMVTMQRLF  162 (292)
Q Consensus       104 --s~~r~vdFp~~~G~r~~~~~~~pD~~Tlp~~~g---i~~V~~~~g~~~~~~~~ll~~l~~lg  162 (292)
                        ...+.++|.+ .+.-.+|.  ..|-...-..++   |+++.-+.--.+.+... +..++.+|
T Consensus        79 ~~~~~~~~~~~~-~~~~E~~p--nrdsl~y~~~y~~~~i~t~~rgTLRy~G~~~~-~~~l~~lG  138 (267)
T d1e5qa2          79 LMATAKPYFIYP-GFAFVAYP--NRDSTPYKERYQIPEADNIVRGTLRYQGFPQF-IKVLVDIG  138 (267)
T ss_dssp             SGGGCEECCSST-TBCEEEEE--CSBCTTHHHHTTCTTCSEEEEEEEEETTHHHH-HHHHHHTT
T ss_pred             hhhhceeeeccC-CcceEEEe--cCCCcchhhhhcCcchhhhhhhhhcccchHHH-HHHHHHHH
Confidence              4455677764 45555543  335443333334   44433232234555544 34555664