Citrus Sinensis ID: 022758

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290--
MAAKSQIVTGFTMPMTPAPSSSSSSSSSSLCMVKKPLTTSFFNGGVGALKVTRLRIAPSSRSHCYRQGGGALNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVLTMESQADSLNQLTTDDLEGKVAFTSFSFSIFAFKFLPSVEN
cccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccccccHHHHHccccccc
ccccccccccccccccccccccccccccccEEEcccccccHccccccEEEEEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHcccccEEEEEEcccccc
maaksqivtgftmpmtpapsssssssssslcmvkkplttsffnggvgalkvtrlriapssrshcyrqgggalntRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVLTMESQADSLnqlttddlegkvafTSFSFSIFAFKFLPSVEN
maaksqivtgftmpmtpapssssssssssLCMVKKPLTTSFFNGGVGALKVTrlriapssrshcyrqgggalntRMNLFDRLARVVKSYANAilssfedpEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKaqldqqknvVNNLVSNTRLLESKiqearskkdtlKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVLTMESQADSLNQLTTDDLEGKVAFTSFSFSIfafkflpsven
MAAKSQIVTGFTMPMTPAPssssssssssLCMVKKPLTTSFFNGGVGALKVTRLRIAPSSRSHCYRQGGGALNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVLTMESQADSLNQLTTDDLEGKVAftsfsfsifafkfLPSVEN
******************************CMVKKPLTTSFFNGGVGALKVTRLRIAPSSRSHCYRQGGGALNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVK*****************************************************************************************************************************************************DLEGKVAFTSFSFSIFAFKFL*****
******I*TGFT**************************TSFFNGGVGALK*************************MNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATA**LA*****************DWYRKAQLALQKGEEDLAREALKRRKS*************************************S************************************MEEKVLTM*S******************************FL*****
MAAKSQIVTGFTMPM****************MVKKPLTTSFFNGGVGALKVTRLRIAPSSRSHCYRQGGGALNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLAS**************SEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQE******************TKVSEMLGNVNTSSALSAFEKMEEKVLTMESQADSLNQLTTDDLEGKVAFTSFSFSIFAFKFLPSVEN
**********FTMPMTPA**********SLCMVKKPLTTSFFNGGVGALKVTRLRIAPSSRSHCYRQGGGALNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVLTMESQADSLNQLTTDDLEGKVAFTSFSFSIFAFKFLPS***
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MAAKSQIVTGFTMPMTPAPSSSSSSSSSSLCMVKKPLTTSFFNGGVGALKVTRLRIAPSSRSHCYRQGGGALNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASxxxxxxxxxxxxxxxxxxxxxAQLALQKGEEDLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTKVSEMLGNVNTSSALSAxxxxxxxxxxxxxxxxxxxxxTTDDLEGKVAFTSFSFSIFAFKFLPSVEN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query292 2.2.26 [Sep-21-2011]
Q03943323 Membrane-associated 30 kD N/A no 0.883 0.798 0.756 1e-108
Q8S0J7317 Probable membrane-associa yes no 0.849 0.782 0.707 3e-97
O80796330 Membrane-associated prote yes no 0.910 0.806 0.691 4e-95
Q55707267 Uncharacterized protein s N/A no 0.678 0.741 0.479 1e-40
Q9RUB7223 Phage shock protein A hom yes no 0.654 0.856 0.345 7e-24
P0AFM8222 Phage shock protein A OS= yes no 0.630 0.828 0.320 2e-18
P0AFM6222 Phage shock protein A OS= N/A no 0.630 0.828 0.320 2e-18
P0AFM7222 Phage shock protein A OS= N/A no 0.630 0.828 0.320 2e-18
O32201225 Protein LiaH OS=Bacillus yes no 0.565 0.733 0.290 2e-09
P54617227 Phage shock protein A hom no no 0.623 0.801 0.307 3e-09
>sp|Q03943|IM30_PEA Membrane-associated 30 kDa protein, chloroplastic OS=Pisum sativum GN=IM30 PE=2 SV=1 Back     alignment and function desciption
 Score =  392 bits (1006), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 208/275 (75%), Positives = 228/275 (82%), Gaps = 17/275 (6%)

Query: 1   MAAKSQIVTGFTMPMTPAPSSSSSSSSSSLCMVKKPLTTSFFNG-GVGALKVTRLRIAPS 59
           M  K QI +G  +P  P   SSS        ++KKPL T+ F    V  LK   +RIA  
Sbjct: 1   MTTKFQIFSG--LPSAPLQPSSS--------LLKKPLATTLFGTRPVDTLKFRVMRIAKP 50

Query: 60  SRSHCYRQGGGALNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMR 119
            R      GGGA+  RMNLFDR ARVVKSYANA++S+FEDPEKILEQAVLEMNDDL KMR
Sbjct: 51  VR------GGGAIGVRMNLFDRFARVVKSYANALVSTFEDPEKILEQAVLEMNDDLTKMR 104

Query: 120 QATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANAL 179
           QATAQVLASQKRLENK KAA+QASE+WYRKAQLALQKGEEDLAREALKRRKS+ADNA++L
Sbjct: 105 QATAQVLASQKRLENKYKAAQQASEEWYRKAQLALQKGEEDLAREALKRRKSFADNASSL 164

Query: 180 KAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSA 239
           KAQLDQQK+VV+NLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSA
Sbjct: 165 KAQLDQQKSVVDNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSA 224

Query: 240 LSAFEKMEEKVLTMESQADSLNQLTTDDLEGKVAF 274
           LSAFEKMEEKV+TMESQA++L QLTTDDLEGK A 
Sbjct: 225 LSAFEKMEEKVMTMESQAEALGQLTTDDLEGKFAM 259

Pisum sativum (taxid: 3888)
>sp|Q8S0J7|IM30_ORYSJ Probable membrane-associated 30 kDa protein, chloroplastic OS=Oryza sativa subsp. japonica GN=Os01g0895100 PE=1 SV=1 Back     alignment and function description
>sp|O80796|VIPP1_ARATH Membrane-associated protein VIPP1, chloroplastic OS=Arabidopsis thaliana GN=VIPP1 PE=1 SV=1 Back     alignment and function description
>sp|Q55707|Y617_SYNY3 Uncharacterized protein sll0617 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll0617 PE=3 SV=1 Back     alignment and function description
>sp|Q9RUB7|PSPA_DEIRA Phage shock protein A homolog OS=Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) GN=DR_1473 PE=1 SV=1 Back     alignment and function description
>sp|P0AFM8|PSPA_SHIFL Phage shock protein A OS=Shigella flexneri GN=pspA PE=3 SV=2 Back     alignment and function description
>sp|P0AFM6|PSPA_ECOLI Phage shock protein A OS=Escherichia coli (strain K12) GN=pspA PE=1 SV=2 Back     alignment and function description
>sp|P0AFM7|PSPA_ECO57 Phage shock protein A OS=Escherichia coli O157:H7 GN=pspA PE=3 SV=2 Back     alignment and function description
>sp|O32201|LIAH_BACSU Protein LiaH OS=Bacillus subtilis (strain 168) GN=liaH PE=2 SV=1 Back     alignment and function description
>sp|P54617|PSPA_BACSU Phage shock protein A homolog OS=Bacillus subtilis (strain 168) GN=ydjF PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query292
224138834339 predicted protein [Populus trichocarpa] 0.938 0.808 0.760 1e-116
363806682322 uncharacterized protein LOC100818209 [Gl 0.893 0.810 0.803 1e-114
363807044323 uncharacterized protein LOC100781742 [Gl 0.897 0.811 0.8 1e-113
255578930312 Membrane-associated 30 kDa protein, chlo 0.928 0.868 0.761 1e-112
449468854332 PREDICTED: membrane-associated 30 kDa pr 0.934 0.822 0.767 1e-110
225430912324 PREDICTED: probable membrane-associated 0.904 0.814 0.759 1e-109
729842323 RecName: Full=Membrane-associated 30 kDa 0.883 0.798 0.756 1e-106
388510656326 unknown [Lotus japonicus] 0.907 0.812 0.76 1e-105
359478255314 PREDICTED: membrane-associated 30 kDa pr 0.863 0.802 0.728 1e-105
357473093319 Membrane-associated 30 kDa protein [Medi 0.890 0.815 0.741 1e-101
>gi|224138834|ref|XP_002322913.1| predicted protein [Populus trichocarpa] gi|222867543|gb|EEF04674.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 213/280 (76%), Positives = 246/280 (87%), Gaps = 6/280 (2%)

Query: 1   MAAKSQIVTGFTMPMTPAP-----SSSSSSSSSSLCMVKK-PLTTSFFNGGVGALKVTRL 54
           MA KSQ++TG T+PM   P     S+++ +++++LCMVK+  LTTSFFNGGV ALKV R+
Sbjct: 1   MAIKSQLITGLTLPMPHPPYTSSSSNNNGNNNTTLCMVKRRTLTTSFFNGGVEALKVARI 60

Query: 55  RIAPSSRSHCYRQGGGALNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDD 114
           R + S+RS CYRQGGGAL T MNLFDR  RVVKSYANAI+SSFEDPEKILEQ VLEMNDD
Sbjct: 61  RTSLSTRSQCYRQGGGALGTCMNLFDRFGRVVKSYANAIISSFEDPEKILEQTVLEMNDD 120

Query: 115 LVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYAD 174
           L KMRQATAQVLASQKRLENK KAA+ ASE+WYRKAQLALQKGEEDLAREALKRRK+YAD
Sbjct: 121 LTKMRQATAQVLASQKRLENKYKAAQLASEEWYRKAQLALQKGEEDLAREALKRRKTYAD 180

Query: 175 NANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNV 234
           NAN+ KAQLDQQK VV NLVSNTRLLESK+QEA+SKKDTLKARAQSAKT TK++EMLGNV
Sbjct: 181 NANSFKAQLDQQKGVVENLVSNTRLLESKMQEAKSKKDTLKARAQSAKTTTKMNEMLGNV 240

Query: 235 NTSSALSAFEKMEEKVLTMESQADSLNQLTTDDLEGKVAF 274
           NTS+AL+AFEKMEEKV+ MES+A++L QLTT++L+GK A 
Sbjct: 241 NTSNALAAFEKMEEKVMAMESEAEALGQLTTNELDGKFAL 280

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|363806682|ref|NP_001242008.1| uncharacterized protein LOC100818209 [Glycine max] gi|255639265|gb|ACU19931.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|363807044|ref|NP_001242581.1| uncharacterized protein LOC100781742 [Glycine max] gi|255641682|gb|ACU21113.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|255578930|ref|XP_002530318.1| Membrane-associated 30 kDa protein, chloroplast precursor, putative [Ricinus communis] gi|223530174|gb|EEF32085.1| Membrane-associated 30 kDa protein, chloroplast precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449468854|ref|XP_004152136.1| PREDICTED: membrane-associated 30 kDa protein, chloroplastic-like [Cucumis sativus] gi|449484741|ref|XP_004156967.1| PREDICTED: membrane-associated 30 kDa protein, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225430912|ref|XP_002276816.1| PREDICTED: probable membrane-associated 30 kDa protein, chloroplastic [Vitis vinifera] gi|297735245|emb|CBI17607.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|729842|sp|Q03943.1|IM30_PEA RecName: Full=Membrane-associated 30 kDa protein, chloroplastic; Short=M30; Flags: Precursor gi|169107|gb|AAA53545.1| IM30 [Pisum sativum] Back     alignment and taxonomy information
>gi|388510656|gb|AFK43394.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|359478255|ref|XP_002273068.2| PREDICTED: membrane-associated 30 kDa protein, chloroplastic-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|357473093|ref|XP_003606831.1| Membrane-associated 30 kDa protein [Medicago truncatula] gi|355507886|gb|AES89028.1| Membrane-associated 30 kDa protein [Medicago truncatula] gi|388508128|gb|AFK42130.1| unknown [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query292
TAIR|locus:2206290330 PTAC4 "plastid transcriptional 0.910 0.806 0.669 2.9e-87
TIGR_CMR|CPS_3772221 CPS_3772 "phage shock protein 0.674 0.891 0.328 1.1e-25
TIGR_CMR|SO_1807227 SO_1807 "phage shock protein A 0.630 0.810 0.331 2.2e-25
TIGR_CMR|CPS_4751220 CPS_4751 "phage shock protein 0.678 0.9 0.303 2.9e-25
UNIPROTKB|Q9KRG4222 VC1678 "Phage shock protein A" 0.626 0.824 0.360 3.6e-25
TIGR_CMR|VC_1678222 VC_1678 "phage shock protein A 0.626 0.824 0.360 3.6e-25
UNIPROTKB|P0AFM6222 pspA [Escherichia coli K-12 (t 0.630 0.828 0.320 3.3e-24
UNIPROTKB|Q9F4H4221 pspA "Phage shock protein A" [ 0.678 0.895 0.303 1.8e-23
UNIPROTKB|Q81KD9221 BAS4700 "Uncharacterized prote 0.643 0.850 0.260 4e-19
TIGR_CMR|BA_5061221 BA_5061 "conserved hypothetica 0.643 0.850 0.260 4e-19
TAIR|locus:2206290 PTAC4 "plastid transcriptionally active 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 872 (312.0 bits), Expect = 2.9e-87, P = 2.9e-87
 Identities = 182/272 (66%), Positives = 214/272 (78%)

Query:     1 MAAKSQIVTGFTMPMTPAPXXXXXXXXXXLCMVK-KPLTTSFFNGGVGALKVTRLRIAPS 59
             MA K+  VTG   P+ P             C ++  PL TSFF    GAL+V  LR+A  
Sbjct:     1 MALKASPVTGLFPPLRPTASSSPSTSSNRPCSLRILPLRTSFFGNSSGALRVNVLRLACD 60

Query:    60 SRSHCYRQGGGALNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMR 119
             +R  C   G GA    MNLF+R +RVVKSYANA++SSFEDPEKILEQ V+EMN DL KMR
Sbjct:    61 NRLRC--NGHGAT---MNLFERFSRVVKSYANALISSFEDPEKILEQTVIEMNSDLTKMR 115

Query:   120 QATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANAL 179
             QATAQVLASQK+L+NK KAA+Q+S+DWY++AQLAL KG+EDLAREALKRRKS+ADNA AL
Sbjct:   116 QATAQVLASQKQLQNKYKAAQQSSDDWYKRAQLALAKGDEDLAREALKRRKSFADNATAL 175

Query:   180 KAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSA 239
             K QLDQQK VV+NLVSNTRLLESKIQEA++KKDTL ARA++AKTATKV EM+G VNTS A
Sbjct:   176 KTQLDQQKGVVDNLVSNTRLLESKIQEAKAKKDTLLARARTAKTATKVQEMIGTVNTSGA 235

Query:   240 LSAFEKMEEKVLTMESQADSLNQLTTDDLEGK 271
             LSAFEKMEEKV+ MES+AD+L Q+ TD+LEGK
Sbjct:   236 LSAFEKMEEKVMAMESEADALTQIGTDELEGK 267
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0016020 "membrane" evidence=ISS
GO:0010027 "thylakoid membrane organization" evidence=RCA;IMP
GO:0016050 "vesicle organization" evidence=IMP
GO:0009534 "chloroplast thylakoid" evidence=IDA
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0009535 "chloroplast thylakoid membrane" evidence=IDA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0009295 "nucleoid" evidence=IDA
GO:0009508 "plastid chromosome" evidence=IDA
TIGR_CMR|CPS_3772 CPS_3772 "phage shock protein A" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
TIGR_CMR|SO_1807 SO_1807 "phage shock protein A" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_4751 CPS_4751 "phage shock protein A" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KRG4 VC1678 "Phage shock protein A" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_1678 VC_1678 "phage shock protein A" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
UNIPROTKB|P0AFM6 pspA [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
UNIPROTKB|Q9F4H4 pspA "Phage shock protein A" [Yersinia enterocolitica (taxid:630)] Back     alignment and assigned GO terms
UNIPROTKB|Q81KD9 BAS4700 "Uncharacterized protein" [Bacillus anthracis (taxid:1392)] Back     alignment and assigned GO terms
TIGR_CMR|BA_5061 BA_5061 "conserved hypothetical protein" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q03943IM30_PEANo assigned EC number0.75630.88350.7987N/Ano
O80796VIPP1_ARATHNo assigned EC number0.69110.91090.8060yesno
Q8S0J7IM30_ORYSJNo assigned EC number0.70720.84930.7823yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_Genewise1_v1.C_LG_XVI3149
hypothetical protein (339 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query292
COG1842225 COG1842, PspA, Phage shock protein A (IM30), suppr 2e-50
pfam04012220 pfam04012, PspA_IM30, PspA/IM30 family 9e-46
TIGR02977219 TIGR02977, phageshock_pspA, phage shock protein A 1e-40
PRK10698222 PRK10698, PRK10698, phage shock protein PspA; Prov 5e-27
TIGR00998334 TIGR00998, 8a0101, efflux pump membrane protein (m 0.002
TIGR01069771 TIGR01069, mutS2, MutS2 family protein 0.004
>gnl|CDD|224755 COG1842, PspA, Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms] Back     alignment and domain information 
 Score =  165 bits (420), Expect = 2e-50
 Identities = 93/201 (46%), Positives = 131/201 (65%), Gaps = 3/201 (1%)

Query: 76  MNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENK 135
           M +F RL  +VK+  N +L   EDPEK+LEQA+ +M  +L K RQA AQ +A QK+LE K
Sbjct: 1   MGIFSRLKDLVKANINELLDKAEDPEKMLEQAIRDMESELAKARQALAQAIARQKQLERK 60

Query: 136 CKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVS 195
            + A+  +E    KA+LALQ G EDLAREAL+ ++S  D A AL+A+L Q +  V  L  
Sbjct: 61  LEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKALEAELQQAEEQVEKLKK 120

Query: 196 NTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVLTMES 255
               LE KI E R+KK+ LKAR  +AK   KV+  LG  ++SSA++AFE+MEEK+   E+
Sbjct: 121 QLAALEQKIAELRAKKEALKARKAAAKAQEKVNRSLGGGSSSSAMAAFERMEEKIEEREA 180

Query: 256 QADS---LNQLTTDDLEGKVA 273
           +A++   L + + DDL+ + A
Sbjct: 181 RAEAAAELAEGSGDDLDKEFA 201

Length = 225
>gnl|CDD|217843 pfam04012, PspA_IM30, PspA/IM30 family Back     alignment and domain information
>gnl|CDD|213755 TIGR02977, phageshock_pspA, phage shock protein A Back     alignment and domain information
>gnl|CDD|182657 PRK10698, PRK10698, phage shock protein PspA; Provisional Back     alignment and domain information
>gnl|CDD|233228 TIGR00998, 8a0101, efflux pump membrane protein (multidrug resistance protein A) Back     alignment and domain information
>gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 292
PRK10698222 phage shock protein PspA; Provisional 100.0
TIGR02977219 phageshock_pspA phage shock protein A. Members of 100.0
COG1842225 PspA Phage shock protein A (IM30), suppresses sigm 100.0
PF04012221 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T 100.0
PTZ00446191 vacuolar sorting protein SNF7-like; Provisional 98.56
PF03357171 Snf7: Snf7; InterPro: IPR005024 This is a family o 98.28
KOG1656221 consensus Protein involved in glucose derepression 98.17
PTZ00464211 SNF-7-like protein; Provisional 97.85
KOG2911439 consensus Uncharacterized conserved protein [Funct 97.77
PRK10698222 phage shock protein PspA; Provisional 97.21
TIGR02977219 phageshock_pspA phage shock protein A. Members of 96.94
KOG2910209 consensus Uncharacterized conserved protein predic 96.86
PF04012221 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T 96.78
COG1842225 PspA Phage shock protein A (IM30), suppresses sigm 96.46
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 96.43
KOG0996 1293 consensus Structural maintenance of chromosome pro 96.32
PRK09039343 hypothetical protein; Validated 95.98
PRK04863 1486 mukB cell division protein MukB; Provisional 95.92
KOG0971 1243 consensus Microtubule-associated protein dynactin 95.84
PRK09039343 hypothetical protein; Validated 95.73
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 95.55
KOG0971 1243 consensus Microtubule-associated protein dynactin 95.36
TIGR00606 1311 rad50 rad50. This family is based on the phylogeno 95.23
KOG3230224 consensus Vacuolar assembly/sorting protein DID4 [ 95.04
PF12128 1201 DUF3584: Protein of unknown function (DUF3584); In 94.94
COG1196 1163 Smc Chromosome segregation ATPases [Cell division 94.91
COG4372 499 Uncharacterized protein conserved in bacteria with 94.86
KOG09941758 consensus Extracellular matrix glycoprotein Lamini 94.6
PF00261237 Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop 94.58
COG1196 1163 Smc Chromosome segregation ATPases [Cell division 94.52
PF12718143 Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 94.45
PRK02224 880 chromosome segregation protein; Provisional 94.41
PF10168717 Nup88: Nuclear pore component; InterPro: IPR019321 94.25
PRK11637 428 AmiB activator; Provisional 94.1
TIGR02169 1164 SMC_prok_A chromosome segregation protein SMC, pri 93.98
KOG1655218 consensus Protein involved in vacuolar protein sor 93.64
PF00261237 Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop 93.6
smart00787312 Spc7 Spc7 kinetochore protein. This domain is foun 93.51
PRK02224 880 chromosome segregation protein; Provisional 93.4
PF15619194 Lebercilin: Ciliary protein causing Leber congenit 93.34
KOG09941758 consensus Extracellular matrix glycoprotein Lamini 93.31
KOG0804493 consensus Cytoplasmic Zn-finger protein BRAP2 (BRC 93.01
PRK10884206 SH3 domain-containing protein; Provisional 92.91
KOG0977 546 consensus Nuclear envelope protein lamin, intermed 92.88
PF10174 775 Cast: RIM-binding protein of the cytomatrix active 92.81
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 92.81
PF00038312 Filament: Intermediate filament protein; InterPro: 92.77
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 92.64
PRK04863 1486 mukB cell division protein MukB; Provisional 92.6
TIGR03319 514 YmdA_YtgF conserved hypothetical protein YmdA/YtgF 92.31
KOG0250 1074 consensus DNA repair protein RAD18 (SMC family pro 92.24
TIGR02231 525 conserved hypothetical protein. This family consis 92.24
smart00787312 Spc7 Spc7 kinetochore protein. This domain is foun 91.98
KOG0250 1074 consensus DNA repair protein RAD18 (SMC family pro 91.87
KOG0804493 consensus Cytoplasmic Zn-finger protein BRAP2 (BRC 91.86
KOG0963 629 consensus Transcription factor/CCAAT displacement 91.58
PRK04778569 septation ring formation regulator EzrA; Provision 91.49
PRK12704 520 phosphodiesterase; Provisional 90.85
KOG0979 1072 consensus Structural maintenance of chromosome pro 90.76
KOG0980 980 consensus Actin-binding protein SLA2/Huntingtin-in 90.45
PRK11637 428 AmiB activator; Provisional 90.44
TIGR01843 423 type_I_hlyD type I secretion membrane fusion prote 90.19
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 90.16
PF06785 401 UPF0242: Uncharacterised protein family (UPF0242); 89.71
PF12325120 TMF_TATA_bd: TATA element modulatory factor 1 TATA 89.65
TIGR03007 498 pepcterm_ChnLen polysaccharide chain length determ 89.64
PF13166 712 AAA_13: AAA domain 89.53
TIGR01005 754 eps_transp_fam exopolysaccharide transport protein 89.49
TIGR00606 1311 rad50 rad50. This family is based on the phylogeno 89.44
PF10168717 Nup88: Nuclear pore component; InterPro: IPR019321 89.43
PRK03918 880 chromosome segregation protein; Provisional 88.98
TIGR03752 472 conj_TIGR03752 integrating conjugative element pro 88.37
PF12128 1201 DUF3584: Protein of unknown function (DUF3584); In 88.36
PHA02562 562 46 endonuclease subunit; Provisional 88.04
PF05667594 DUF812: Protein of unknown function (DUF812); Inte 87.89
KOG1029 1118 consensus Endocytic adaptor protein intersectin [S 87.88
PF05384159 DegS: Sensor protein DegS; InterPro: IPR008595 Thi 87.61
PF1004699 BLOC1_2: Biogenesis of lysosome-related organelles 87.45
PF03148384 Tektin: Tektin family; InterPro: IPR000435 Tektin 87.14
KOG0982502 consensus Centrosomal protein Nuf [Cell cycle cont 87.08
COG1579239 Zn-ribbon protein, possibly nucleic acid-binding [ 86.97
PF00769246 ERM: Ezrin/radixin/moesin family; InterPro: IPR011 86.71
PF06160 560 EzrA: Septation ring formation regulator, EzrA ; I 86.57
TIGR03017444 EpsF chain length determinant protein EpsF. Sequen 86.45
TIGR01010362 BexC_CtrB_KpsE polysaccharide export inner-membran 85.96
KOG2685421 consensus Cystoskeletal protein Tektin [Cytoskelet 85.83
PF12718143 Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 85.42
TIGR01843 423 type_I_hlyD type I secretion membrane fusion prote 85.04
KOG0976 1265 consensus Rho/Rac1-interacting serine/threonine ki 84.8
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 84.51
PRK13729 475 conjugal transfer pilus assembly protein TraB; Pro 84.47
COG1382119 GimC Prefoldin, chaperonin cofactor [Posttranslati 84.47
PF03194254 LUC7: LUC7 N_terminus; InterPro: IPR004882 This fa 84.25
PRK07720146 fliJ flagellar biosynthesis chaperone; Validated 84.09
PF05816333 TelA: Toxic anion resistance protein (TelA); Inter 84.05
COG1566352 EmrA Multidrug resistance efflux pump [Defense mec 84.0
PF13851201 GAS: Growth-arrest specific micro-tubule binding 83.77
KOG0996 1293 consensus Structural maintenance of chromosome pro 83.65
COG4942420 Membrane-bound metallopeptidase [Cell division and 83.45
PRK09343121 prefoldin subunit beta; Provisional 83.45
PF1004699 BLOC1_2: Biogenesis of lysosome-related organelles 83.11
CHL00118156 atpG ATP synthase CF0 B' subunit; Validated 83.01
TIGR03007498 pepcterm_ChnLen polysaccharide chain length determ 82.98
KOG3232203 consensus Vacuolar assembly/sorting protein DID2 [ 82.92
PF08614194 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR 82.88
PF05701522 WEMBL: Weak chloroplast movement under blue light; 82.86
PRK0084677 hypothetical protein; Provisional 82.84
PRK11281 1113 hypothetical protein; Provisional 82.77
PRK08476141 F0F1 ATP synthase subunit B'; Validated 82.59
PF0410269 SlyX: SlyX; InterPro: IPR007236 The SlyX protein h 82.53
PF06637442 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 Th 82.52
COG3883265 Uncharacterized protein conserved in bacteria [Fun 82.45
PRK00409782 recombination and DNA strand exchange inhibitor pr 82.21
KOG0995 581 consensus Centromere-associated protein HEC1 [Cell 82.21
KOG0249 916 consensus LAR-interacting protein and related prot 82.19
KOG0946970 consensus ER-Golgi vesicle-tethering protein p115 82.08
TIGR02680 1353 conserved hypothetical protein TIGR02680. Members 81.7
PF06810155 Phage_GP20: Phage minor structural protein GP20; I 81.69
PF05266190 DUF724: Protein of unknown function (DUF724); Inte 81.19
PF06120301 Phage_HK97_TLTM: Tail length tape measure protein; 81.19
TIGR03185650 DNA_S_dndD DNA sulfur modification protein DndD. T 81.1
KOG1003205 consensus Actin filament-coating protein tropomyos 80.84
PRK1542279 septal ring assembly protein ZapB; Provisional 80.78
PF11180192 DUF2968: Protein of unknown function (DUF2968); In 80.5
PRK09174204 F0F1 ATP synthase subunit B'; Validated 80.41
PF03357171 Snf7: Snf7; InterPro: IPR005024 This is a family o 80.36
PRK0440675 hypothetical protein; Provisional 80.2
PRK0073668 hypothetical protein; Provisional 80.05
>PRK10698 phage shock protein PspA; Provisional Back     alignment and domain information 
Probab=100.00  E-value=2.3e-45  Score=331.23  Aligned_cols=207  Identities=30%  Similarity=0.455  Sum_probs=202.4

Q ss_pred             CchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758           76 MNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQ  155 (292)
Q Consensus        76 M~if~Rl~~lira~~n~~ld~~EDPe~mLeQ~Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~  155 (292)
                      ||||+||+++|+|++|+++|++|||++||+|+|+||++++.++++++|++++.++++++++.+++..+.+|+.+|++||.
T Consensus         1 M~if~Rl~~ii~a~in~~ldkaEDP~k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~   80 (222)
T PRK10698          1 MGIFSRFADIVNANINALLEKAEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALR   80 (222)
T ss_pred             CCHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 022758          156 KGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVN  235 (292)
Q Consensus       156 ~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~AkAq~~i~~~~~~~~  235 (292)
                      +|+||||++||.+|..++..+..|+.+++.+...+++|+.++.+|+.+|.+++.++.+|++|+++|+++.++++.+++++
T Consensus        81 ~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~~~~  160 (222)
T PRK10698         81 KEKEDLARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLDSGK  160 (222)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHhHHHHHHHhhccCCCcHHHHHhcccCCCccc
Q 022758          236 TSSALSAFEKMEEKVLTMESQADSLNQLTTDDLEGKVAFTSFSFSIF  282 (292)
Q Consensus       236 ~~~a~~~feR~eeki~~~EA~AeA~~eL~~~~Le~~fa~Le~~~~i~  282 (292)
                      +++++..|+|||+||+++|++++|+..+.+++|+++|++|+.+++|+
T Consensus       161 ~~~a~~~f~rmE~ki~~~Ea~aea~~~~~~~~l~~e~~~le~~~~ve  207 (222)
T PRK10698        161 LDEAMARFESFERRIDQMEAEAESHGFGKQKSLDQQFAELKADDEIS  207 (222)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHhHhhccCCCCHHHHHHHhhccchHH
Confidence            99999999999999999999999997766678999999999877665

>TIGR02977 phageshock_pspA phage shock protein A Back     alignment and domain information
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms] Back     alignment and domain information
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription Back     alignment and domain information
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional Back     alignment and domain information
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7 Back     alignment and domain information
>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PTZ00464 SNF-7-like protein; Provisional Back     alignment and domain information
>KOG2911 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK10698 phage shock protein PspA; Provisional Back     alignment and domain information
>TIGR02977 phageshock_pspA phage shock protein A Back     alignment and domain information
>KOG2910 consensus Uncharacterized conserved protein predicted to be involved in protein sorting [General function prediction only] Back     alignment and domain information
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription Back     alignment and domain information
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms] Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>KOG3230 consensus Vacuolar assembly/sorting protein DID4 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] Back     alignment and domain information
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] Back     alignment and domain information
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>smart00787 Spc7 Spc7 kinetochore protein Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease Back     alignment and domain information
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] Back     alignment and domain information
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only] Back     alignment and domain information
>PRK10884 SH3 domain-containing protein; Provisional Back     alignment and domain information
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>TIGR02231 conserved hypothetical protein Back     alignment and domain information
>smart00787 Spc7 Spc7 kinetochore protein Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only] Back     alignment and domain information
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription] Back     alignment and domain information
>PRK04778 septation ring formation regulator EzrA; Provisional Back     alignment and domain information
>PRK12704 phosphodiesterase; Provisional Back     alignment and domain information
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton] Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function Back     alignment and domain information
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes [] Back     alignment and domain information
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily Back     alignment and domain information
>PF13166 AAA_13: AAA domain Back     alignment and domain information
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins Back     alignment and domain information
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [] Back     alignment and domain information
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules [] Back     alignment and domain information
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin [] Back     alignment and domain information
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site Back     alignment and domain information
>TIGR03017 EpsF chain length determinant protein EpsF Back     alignment and domain information
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family Back     alignment and domain information
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton] Back     alignment and domain information
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family Back     alignment and domain information
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms] Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional Back     alignment and domain information
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF03194 LUC7: LUC7 N_terminus; InterPro: IPR004882 This family consists of several LUC7 protein homologues that are restricted to eukaryotes Back     alignment and domain information
>PRK07720 fliJ flagellar biosynthesis chaperone; Validated Back     alignment and domain information
>PF05816 TelA: Toxic anion resistance protein (TelA); InterPro: IPR008863 This family consists of several prokaryotic TelA like proteins Back     alignment and domain information
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms] Back     alignment and domain information
>PF13851 GAS: Growth-arrest specific micro-tubule binding Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information
>PRK09343 prefoldin subunit beta; Provisional Back     alignment and domain information
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [] Back     alignment and domain information
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated Back     alignment and domain information
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily Back     alignment and domain information
>KOG3232 consensus Vacuolar assembly/sorting protein DID2 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information
>PRK00846 hypothetical protein; Provisional Back     alignment and domain information
>PRK11281 hypothetical protein; Provisional Back     alignment and domain information
>PRK08476 F0F1 ATP synthase subunit B'; Validated Back     alignment and domain information
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function Back     alignment and domain information
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals Back     alignment and domain information
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed Back     alignment and domain information
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only] Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>TIGR02680 conserved hypothetical protein TIGR02680 Back     alignment and domain information
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length Back     alignment and domain information
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana Back     alignment and domain information
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12) Back     alignment and domain information
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD Back     alignment and domain information
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton] Back     alignment and domain information
>PRK15422 septal ring assembly protein ZapB; Provisional Back     alignment and domain information
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function Back     alignment and domain information
>PRK09174 F0F1 ATP synthase subunit B'; Validated Back     alignment and domain information
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7 Back     alignment and domain information
>PRK04406 hypothetical protein; Provisional Back     alignment and domain information
>PRK00736 hypothetical protein; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query292
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-04
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 3e-05
1i84_S 1184 Smooth muscle myosin heavy chain; muscle protein, 2e-04
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 2e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 49.1 bits (116), Expect = 1e-06
 Identities = 45/282 (15%), Positives = 89/282 (31%), Gaps = 60/282 (21%)

Query: 54  LRIAPSSR--SHCYRQGGGALNTRMNLFDRL----ARVVKSYANAILSSFEDPEKILEQA 107
            +   S     H          T   LF  L      +V+ +   +L    + + ++   
Sbjct: 42  PKSILSKEEIDHIIMSKDAVSGTLR-LFWTLLSKQEEMVQKFVEEVLR--INYKFLMSPI 98

Query: 108 VLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQAS---EDWYRKAQLALQK-------- 156
             E     +  R    Q      RL N  +   + +      Y K + AL +        
Sbjct: 99  KTEQRQPSMMTRMYIEQR----DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL 154

Query: 157 -------GEEDLAREALK--RRKSYAD---------NANALKAQLDQQKNVVNNLVSNTR 198
                  G+  +A +     + +   D         N N+ +  L+  + ++  +  N  
Sbjct: 155 IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT 214

Query: 199 LLESKIQEARSKKDTLKAR------AQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVL- 251
                    + +  +++A       ++  +    V   L NV  + A +AF  +  K+L 
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV---LLNVQNAKAWNAFN-LSCKILL 270

Query: 252 -TMESQ-ADSLNQLTTDDL---EGKVAFTSF-SFSIFAFKFL 287
            T   Q  D L+  TT  +      +  T     S+   K+L
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL-KYL 311
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query292
4abm_A79 Charged multivesicular BODY protein 4B; cell cycle 97.24
3mq9_A471 Bone marrow stromal antigen 2 fused to maltose-BI 97.1
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 96.34
2gd5_A179 Charged multivesicular BODY protein 3; CHMP3, ESCR 96.3
2fxo_A129 Myosin heavy chain, cardiac muscle beta isoform; c 95.93
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 95.23
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 95.0
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 94.42
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 94.37
3frt_A218 Charged multivesicular BODY protein 3; ESCRT, ESCR 93.63
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 93.62
1i84_S 1184 Smooth muscle myosin heavy chain; muscle protein, 92.79
1i84_S 1184 Smooth muscle myosin heavy chain; muscle protein, 91.87
2v71_A189 Nuclear distribution protein NUDE-like 1; developm 91.61
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 90.9
3bas_A89 Myosin heavy chain, striated muscle/general contro 90.49
3ajw_A150 Flagellar FLIJ protein; flagellum, type III secret 89.88
1deq_A390 Fibrinogen (alpha chain); coiled-coil, blood clott 89.44
1m1j_B 464 Fibrinogen beta chain; coiled coils, disulfide rin 88.14
3o0z_A168 RHO-associated protein kinase 1; coiled-coil, tran 87.3
3mq9_A471 Bone marrow stromal antigen 2 fused to maltose-BI 86.63
3iox_A 497 AGI/II, PA; alpha helix, PPII helix, supersandwich 86.57
3ghg_A 562 Fibrinogen alpha chain; triple-stranded coiled coi 86.34
2efr_A155 General control protein GCN4 and tropomyosin 1 Al; 85.85
4fm3_A98 Uncharacterized hypothetical protein; PF14346 fami 85.69
3oja_A487 Leucine-rich immune molecule 1; coiled-coil, helix 85.04
3u59_A101 Tropomyosin beta chain; muscle contraction, actin, 84.65
3u1c_A101 Tropomyosin alpha-1 chain; anti-parallel coiled co 84.26
3s4r_A93 Vimentin; alpha-helix, cytoskeleton, intermediate 84.26
3ol1_A119 Vimentin; structural genomics, PSI-2, protein stru 84.25
1l8d_A112 DNA double-strand break repair RAD50 ATPase; zinc 83.62
1jcd_A52 Major outer membrane lipoprotein; protein folding, 83.41
3ghg_A 562 Fibrinogen alpha chain; triple-stranded coiled coi 82.91
3mq7_A121 Bone marrow stromal antigen 2; HIV, antiviral prot 81.44
2v4h_A110 NF-kappa-B essential modulator; transcription, met 81.38
1m1j_C 409 Fibrinogen gamma chain; coiled coils, disulfide ri 81.37
2jee_A81 YIIU; FTSZ, septum, coiled-coil, cell division, ce 80.1
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens} Back     alignment and structure
Probab=97.24  E-value=0.0055  Score=45.92  Aligned_cols=74  Identities=20%  Similarity=0.206  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758          119 RQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNL  193 (292)
Q Consensus       119 r~alA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~L  193 (292)
                      ..++..+......|+.+...++..++.-...|+..+ .++-.-|..||.+|+.||.++..+.+++.+++.++..+
T Consensus         5 ~~AI~~Lr~~~d~L~kkq~~L~~~i~~e~~~Ak~~~-~knK~~Al~aLkrKK~~E~qL~q~~~ql~~LE~q~~~i   78 (79)
T 4abm_A            5 QEAIQRLRDTEEMLSKKQEFLEKKIEQELTAAKKHG-TKNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREAL   78 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhc
Confidence            455666666677788888888888889999999999 56677999999999999999999999999998888765
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli} Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A Back     alignment and structure
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens} Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Back     alignment and structure
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Back     alignment and structure
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A Back     alignment and structure
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium} Back     alignment and structure
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B* Back     alignment and structure
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} Back     alignment and structure
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli} Back     alignment and structure
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A Back     alignment and structure
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G* Back     alignment and structure
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A Back     alignment and structure
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa} Back     alignment and structure
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus} Back     alignment and structure
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A Back     alignment and structure
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A Back     alignment and structure
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1 Back     alignment and structure
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A Back     alignment and structure
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G* Back     alignment and structure
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A Back     alignment and structure
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus} Back     alignment and structure
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C Back     alignment and structure
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query292
d1fxka_107 Prefoldin beta subunit {Archaeon Methanobacterium 80.13
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin beta subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=80.13  E-value=6.6  Score=28.23  Aligned_cols=40  Identities=13%  Similarity=0.203  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022758          108 VLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWY  147 (292)
Q Consensus       108 Iremee~l~kar~alA~v~A~~k~le~kl~~~~~~~~~~e  147 (292)
                      +++.-..+..++..+..+......++.++.+...-..+++
T Consensus         3 lqe~~~~~q~lq~el~~~~~q~~~le~q~~E~~~vl~eL~   42 (107)
T d1fxka_           3 VQHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELS   42 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455566667777777777777777777776665555544